Query psy17089
Match_columns 419
No_of_seqs 345 out of 3490
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 21:34:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 100.0 2E-75 6.8E-80 575.0 31.4 410 1-419 2-414 (436)
2 4dcu_A GTP-binding protein ENG 100.0 2E-72 6.7E-77 556.8 32.1 409 2-419 23-434 (456)
3 1mky_A Probable GTP-binding pr 100.0 1.8E-71 6E-76 547.4 38.6 410 2-419 1-416 (439)
4 3iev_A GTP-binding protein ERA 99.9 1.2E-25 4.1E-30 210.4 21.3 177 180-359 8-187 (308)
5 2gj8_A MNME, tRNA modification 99.9 3.8E-26 1.3E-30 195.8 14.0 161 181-354 3-166 (172)
6 1wf3_A GTP-binding protein; GT 99.9 8.3E-26 2.8E-30 210.4 17.4 167 181-355 6-174 (301)
7 4djt_A GTP-binding nuclear pro 99.9 1.1E-27 3.9E-32 213.3 4.5 201 180-399 9-217 (218)
8 2dyk_A GTP-binding protein; GT 99.9 2E-25 7E-30 188.5 18.0 160 2-163 1-161 (161)
9 1svi_A GTP-binding protein YSX 99.9 8.1E-25 2.8E-29 191.1 21.6 170 180-353 21-194 (195)
10 4dhe_A Probable GTP-binding pr 99.9 1.4E-25 4.8E-30 200.4 16.4 175 180-355 27-212 (223)
11 3pqc_A Probable GTP-binding pr 99.9 2.4E-24 8.3E-29 187.9 21.8 171 180-354 21-194 (195)
12 1wf3_A GTP-binding protein; GT 99.9 8E-25 2.7E-29 203.7 17.0 163 3-166 8-175 (301)
13 2dyk_A GTP-binding protein; GT 99.9 1.4E-24 4.9E-29 183.3 13.7 159 183-352 2-160 (161)
14 1mky_A Probable GTP-binding pr 99.9 3.2E-24 1.1E-28 210.7 17.7 165 183-355 2-167 (439)
15 3iev_A GTP-binding protein ERA 99.9 1.8E-23 6.3E-28 195.6 21.0 165 3-167 11-185 (308)
16 2wji_A Ferrous iron transport 99.9 3.8E-24 1.3E-28 182.0 14.5 159 182-352 3-163 (165)
17 2qu8_A Putative nucleolar GTP- 99.9 9.5E-24 3.3E-28 189.3 17.6 173 180-355 27-206 (228)
18 1xzp_A Probable tRNA modificat 99.9 1.6E-24 5.6E-29 213.2 13.3 162 181-353 242-404 (482)
19 3gee_A MNME, tRNA modification 99.9 1E-24 3.5E-29 214.6 11.8 162 181-353 232-397 (476)
20 2gj8_A MNME, tRNA modification 99.9 8.7E-24 3E-28 181.1 16.0 160 3-165 5-167 (172)
21 3i8s_A Ferrous iron transport 99.9 2.3E-24 7.9E-29 198.4 12.6 185 181-373 2-190 (274)
22 3a1s_A Iron(II) transport prot 99.9 1.9E-23 6.7E-28 190.3 18.5 162 181-354 4-167 (258)
23 1zj6_A ADP-ribosylation factor 99.9 2.2E-23 7.4E-28 180.9 18.0 161 181-356 15-180 (187)
24 4dkx_A RAS-related protein RAB 99.9 1.4E-24 4.9E-29 192.3 10.6 159 181-355 12-177 (216)
25 3iby_A Ferrous iron transport 99.9 2.4E-24 8.1E-29 196.1 12.3 159 183-351 2-164 (256)
26 1fzq_A ADP-ribosylation factor 99.9 1.6E-23 5.4E-28 181.0 16.4 159 181-354 15-178 (181)
27 4bas_A ADP-ribosylation factor 99.9 9.9E-24 3.4E-28 184.8 14.8 164 180-356 15-191 (199)
28 2lkc_A Translation initiation 99.9 2.4E-24 8.3E-29 185.1 10.4 165 180-357 6-174 (178)
29 1r8s_A ADP-ribosylation factor 99.9 1.7E-23 5.9E-28 177.3 15.0 156 183-353 1-161 (164)
30 2g6b_A RAS-related protein RAB 99.9 2.1E-23 7.3E-28 179.5 15.4 164 180-358 8-178 (180)
31 1ksh_A ARF-like protein 2; sma 99.9 2.8E-23 9.7E-28 179.9 16.0 160 181-355 17-181 (186)
32 1upt_A ARL1, ADP-ribosylation 99.9 3.1E-23 1.1E-27 176.9 16.0 160 180-354 5-169 (171)
33 1zd9_A ADP-ribosylation factor 99.9 2.9E-23 9.9E-28 180.4 15.9 161 180-354 20-185 (188)
34 3qq5_A Small GTP-binding prote 99.9 7E-25 2.4E-29 212.2 6.2 216 180-407 32-274 (423)
35 2b6h_A ADP-ribosylation factor 99.9 4.2E-23 1.4E-27 180.0 16.4 159 180-353 27-190 (192)
36 3q72_A GTP-binding protein RAD 99.9 7.6E-24 2.6E-28 179.9 11.3 156 182-355 2-165 (166)
37 3ec1_A YQEH GTPase; atnos1, at 99.9 2.1E-25 7.1E-30 213.5 1.7 241 71-342 60-319 (369)
38 3geh_A MNME, tRNA modification 99.9 7.6E-24 2.6E-28 207.6 12.7 164 181-356 223-386 (462)
39 2nzj_A GTP-binding protein REM 99.9 1E-23 3.4E-28 180.6 11.6 160 181-355 3-170 (175)
40 2h17_A ADP-ribosylation factor 99.9 2E-23 6.7E-28 180.3 13.4 156 180-350 19-179 (181)
41 3iby_A Ferrous iron transport 99.9 3.5E-23 1.2E-27 188.3 15.3 155 2-161 1-164 (256)
42 4dsu_A GTPase KRAS, isoform 2B 99.9 8.8E-23 3E-27 177.0 17.0 158 181-355 3-167 (189)
43 4dhe_A Probable GTP-binding pr 99.9 2.8E-23 9.6E-28 185.5 14.2 164 2-165 29-212 (223)
44 3ihw_A Centg3; RAS, centaurin, 99.9 2.6E-23 9E-28 180.1 13.6 158 180-356 18-182 (184)
45 3b1v_A Ferrous iron uptake tra 99.9 8.1E-24 2.8E-28 193.9 10.8 160 182-354 3-164 (272)
46 2wji_A Ferrous iron transport 99.9 1.1E-22 3.9E-27 172.8 17.1 153 3-162 4-163 (165)
47 2h57_A ADP-ribosylation factor 99.9 3.1E-23 1.1E-27 180.5 13.9 162 180-355 19-188 (190)
48 2x77_A ADP-ribosylation factor 99.9 3.7E-23 1.3E-27 179.7 14.2 160 181-355 21-185 (189)
49 1moz_A ARL1, ADP-ribosylation 99.9 4E-23 1.4E-27 178.4 13.8 159 181-354 17-180 (183)
50 3reg_A RHO-like small GTPase; 99.9 1.1E-23 3.8E-28 183.9 10.2 161 180-356 21-190 (194)
51 3k53_A Ferrous iron transport 99.9 1.2E-22 4.2E-27 186.9 17.7 163 182-356 3-168 (271)
52 1ega_A Protein (GTP-binding pr 99.9 3.8E-23 1.3E-27 192.8 14.1 169 181-356 7-177 (301)
53 3cbq_A GTP-binding protein REM 99.9 5.7E-23 1.9E-27 179.7 14.1 162 180-356 21-190 (195)
54 2hjg_A GTP-binding protein ENG 99.9 9.9E-24 3.4E-28 207.1 10.4 162 183-354 4-165 (436)
55 3h2y_A GTPase family protein; 99.9 3E-25 1E-29 212.2 -0.5 237 71-337 58-313 (368)
56 2il1_A RAB12; G-protein, GDP, 99.9 5.6E-23 1.9E-27 179.2 13.7 162 179-354 23-190 (192)
57 3tkl_A RAS-related protein RAB 99.9 5.1E-23 1.7E-27 179.8 13.4 161 180-356 14-181 (196)
58 2wjg_A FEOB, ferrous iron tran 99.9 1.1E-22 3.8E-27 176.4 15.2 164 181-356 6-171 (188)
59 1kao_A RAP2A; GTP-binding prot 99.9 1.6E-22 5.6E-27 171.4 15.9 157 181-354 2-166 (167)
60 2fn4_A P23, RAS-related protei 99.9 5.5E-23 1.9E-27 176.9 13.0 161 180-357 7-175 (181)
61 1c1y_A RAS-related protein RAP 99.9 7.7E-23 2.6E-27 173.6 13.5 157 181-353 2-166 (167)
62 2iwr_A Centaurin gamma 1; ANK 99.9 3.4E-23 1.1E-27 178.1 11.4 151 181-354 6-169 (178)
63 1g16_A RAS-related protein SEC 99.9 6.5E-23 2.2E-27 174.6 13.0 159 181-355 2-166 (170)
64 2j1l_A RHO-related GTP-binding 99.9 1.4E-22 4.8E-27 179.9 15.6 164 180-356 32-211 (214)
65 1f6b_A SAR1; gtpases, N-termin 99.9 5.4E-23 1.9E-27 180.3 12.5 156 181-351 24-196 (198)
66 2ce2_X GTPase HRAS; signaling 99.9 8.1E-22 2.8E-26 166.8 19.3 156 182-354 3-165 (166)
67 3tw8_B RAS-related protein RAB 99.9 2.4E-23 8.3E-28 179.2 9.9 160 180-355 7-172 (181)
68 3q85_A GTP-binding protein REM 99.9 6.9E-23 2.4E-27 174.4 12.6 158 182-354 2-167 (169)
69 2fh5_B SR-beta, signal recogni 99.9 1.7E-22 5.9E-27 179.2 15.6 157 181-351 6-213 (214)
70 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.3E-22 4.4E-27 174.1 14.2 160 180-354 5-174 (177)
71 3pqc_A Probable GTP-binding pr 99.9 7.1E-22 2.4E-26 172.1 19.2 160 2-164 23-194 (195)
72 1m2o_B GTP-binding protein SAR 99.9 4.6E-23 1.6E-27 179.5 11.5 155 181-350 22-188 (190)
73 2g3y_A GTP-binding protein GEM 99.9 4.5E-23 1.5E-27 182.2 11.6 161 180-354 35-203 (211)
74 2hxs_A RAB-26, RAS-related pro 99.9 1.3E-22 4.5E-27 174.2 14.2 161 180-356 4-175 (178)
75 1u8z_A RAS-related protein RAL 99.9 4.4E-22 1.5E-26 168.9 17.2 156 181-354 3-167 (168)
76 3i8s_A Ferrous iron transport 99.9 9.8E-23 3.4E-27 187.5 13.4 159 2-165 3-170 (274)
77 4gzl_A RAS-related C3 botulinu 99.9 4.1E-23 1.4E-27 181.9 10.5 159 180-351 28-202 (204)
78 1ek0_A Protein (GTP-binding pr 99.9 1.9E-23 6.5E-28 177.8 8.0 156 181-352 2-167 (170)
79 2hup_A RAS-related protein RAB 99.9 1.5E-22 5.1E-27 177.9 13.7 160 180-355 27-194 (201)
80 4dkx_A RAS-related protein RAB 99.9 9.8E-23 3.4E-27 180.5 12.3 152 3-165 14-177 (216)
81 3t1o_A Gliding protein MGLA; G 99.9 9.8E-23 3.4E-27 178.0 11.9 161 180-355 12-193 (198)
82 3con_A GTPase NRAS; structural 99.9 5.1E-22 1.8E-26 172.6 16.3 160 180-356 19-185 (190)
83 1svi_A GTP-binding protein YSX 99.9 6.8E-22 2.3E-26 172.5 17.1 158 3-163 24-194 (195)
84 3kkq_A RAS-related protein M-R 99.9 7.6E-22 2.6E-26 170.4 17.1 158 180-354 16-182 (183)
85 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.5E-22 5.2E-27 175.0 12.7 162 181-355 4-181 (186)
86 2fg5_A RAB-22B, RAS-related pr 99.9 5.1E-23 1.7E-27 179.5 9.7 161 180-354 21-186 (192)
87 2q3h_A RAS homolog gene family 99.9 5.4E-23 1.8E-27 180.5 9.9 160 180-355 18-196 (201)
88 2atx_A Small GTP binding prote 99.9 8.8E-23 3E-27 178.1 11.2 157 181-353 17-192 (194)
89 3cph_A RAS-related protein SEC 99.9 2.1E-22 7.2E-27 178.3 13.7 159 180-354 18-182 (213)
90 1z0j_A RAB-22, RAS-related pro 99.9 1.4E-22 4.7E-27 172.6 11.9 157 180-353 4-168 (170)
91 3clv_A RAB5 protein, putative; 99.9 5.7E-22 2E-26 174.1 16.3 157 181-354 6-204 (208)
92 1z08_A RAS-related protein RAB 99.9 8.4E-23 2.9E-27 174.0 10.6 159 180-354 4-169 (170)
93 2ew1_A RAS-related protein RAB 99.9 3.3E-22 1.1E-26 175.6 14.5 160 180-355 24-190 (201)
94 3llu_A RAS-related GTP-binding 99.9 4E-22 1.4E-26 174.4 15.0 162 180-352 18-195 (196)
95 2bov_A RAla, RAS-related prote 99.9 1.4E-21 4.6E-26 172.1 18.4 157 180-354 12-177 (206)
96 2qu8_A Putative nucleolar GTP- 99.9 1E-21 3.4E-26 176.1 17.8 162 3-165 30-206 (228)
97 3t5g_A GTP-binding protein RHE 99.9 7.3E-23 2.5E-27 176.5 9.9 159 181-356 5-171 (181)
98 3a1s_A Iron(II) transport prot 99.9 6.9E-22 2.4E-26 180.1 16.8 156 3-163 6-166 (258)
99 2j0v_A RAC-like GTP-binding pr 99.9 3E-22 1E-26 177.4 13.9 160 181-356 8-182 (212)
100 2fu5_C RAS-related protein RAB 99.9 8.2E-23 2.8E-27 176.5 9.9 159 180-354 6-171 (183)
101 1z2a_A RAS-related protein RAB 99.9 3.1E-22 1.1E-26 170.0 13.3 157 181-353 4-166 (168)
102 2a9k_A RAS-related protein RAL 99.9 4.6E-22 1.6E-26 172.1 14.6 157 180-354 16-181 (187)
103 1ega_A Protein (GTP-binding pr 99.9 1.1E-22 3.9E-27 189.5 11.4 163 3-166 9-177 (301)
104 3o47_A ADP-ribosylation factor 99.9 4.9E-22 1.7E-26 187.6 15.9 159 181-354 164-327 (329)
105 1z0f_A RAB14, member RAS oncog 99.9 2.1E-22 7.2E-27 172.9 12.3 157 180-353 13-177 (179)
106 2p5s_A RAS and EF-hand domain 99.9 4.2E-22 1.4E-26 174.7 14.3 158 180-353 26-196 (199)
107 2efe_B Small GTP-binding prote 99.9 1.9E-22 6.4E-27 173.8 11.8 158 180-354 10-175 (181)
108 1z06_A RAS-related protein RAB 99.9 1.8E-22 6.1E-27 175.5 11.7 159 180-353 18-187 (189)
109 2a5j_A RAS-related protein RAB 99.9 4.8E-22 1.6E-26 173.1 14.4 159 180-354 19-184 (191)
110 1x3s_A RAS-related protein RAB 99.9 4.4E-22 1.5E-26 173.5 14.2 161 180-356 13-180 (195)
111 1ky3_A GTP-binding protein YPT 99.9 1.2E-22 4.1E-27 174.9 10.5 161 180-355 6-179 (182)
112 2bcg_Y Protein YP2, GTP-bindin 99.9 1.9E-22 6.6E-27 177.7 12.0 161 180-356 6-173 (206)
113 2xtp_A GTPase IMAP family memb 99.9 9.6E-22 3.3E-26 179.9 16.9 174 180-356 20-210 (260)
114 2erx_A GTP-binding protein DI- 99.9 2.3E-22 7.8E-27 171.5 11.8 158 181-355 2-168 (172)
115 2y8e_A RAB-protein 6, GH09086P 99.9 3.7E-22 1.3E-26 171.4 13.2 156 181-353 13-176 (179)
116 1x3s_A RAS-related protein RAB 99.9 3.7E-22 1.3E-26 174.1 13.3 153 3-166 16-180 (195)
117 1r2q_A RAS-related protein RAB 99.9 1.2E-22 4E-27 172.9 9.7 156 181-353 5-168 (170)
118 2gf9_A RAS-related protein RAB 99.9 3.4E-22 1.2E-26 173.6 12.6 159 180-354 20-185 (189)
119 2cjw_A GTP-binding protein GEM 99.9 1.3E-22 4.6E-27 176.9 10.0 161 181-355 5-173 (192)
120 2bme_A RAB4A, RAS-related prot 99.9 1.7E-22 5.9E-27 174.8 10.6 158 180-354 8-173 (186)
121 3r7w_A Gtpase1, GTP-binding pr 99.9 1.4E-21 4.9E-26 182.8 17.6 164 181-351 2-178 (307)
122 3bc1_A RAS-related protein RAB 99.9 1E-21 3.4E-26 171.0 15.5 160 180-355 9-186 (195)
123 2oil_A CATX-8, RAS-related pro 99.9 2.2E-22 7.6E-27 175.4 11.2 159 180-354 23-188 (193)
124 1wb1_A Translation elongation 99.9 1E-21 3.5E-26 194.3 17.2 163 180-353 17-188 (482)
125 2o52_A RAS-related protein RAB 99.9 2E-22 6.8E-27 176.9 10.7 158 180-354 23-188 (200)
126 2gf0_A GTP-binding protein DI- 99.9 1E-21 3.5E-26 171.9 15.2 163 180-359 6-176 (199)
127 3gee_A MNME, tRNA modification 99.9 1.1E-22 3.6E-27 200.2 9.9 158 3-163 234-397 (476)
128 2gco_A H9, RHO-related GTP-bin 99.9 5.9E-22 2E-26 174.0 13.7 161 180-353 23-199 (201)
129 3bwd_D RAC-like GTP-binding pr 99.9 8.5E-23 2.9E-27 176.1 8.1 157 181-353 7-180 (182)
130 1xzp_A Probable tRNA modificat 99.9 3.2E-22 1.1E-26 196.9 13.1 157 3-163 244-404 (482)
131 2lkc_A Translation initiation 99.9 1.5E-22 5E-27 174.0 9.3 153 2-164 8-171 (178)
132 3c5c_A RAS-like protein 12; GD 99.9 1.4E-21 4.7E-26 169.7 15.5 156 180-353 19-185 (187)
133 3dz8_A RAS-related protein RAB 99.9 1.9E-22 6.5E-27 175.6 10.1 159 180-355 21-187 (191)
134 1zbd_A Rabphilin-3A; G protein 99.9 2E-21 6.7E-26 170.8 16.6 158 181-354 7-171 (203)
135 3lvq_E ARF-GAP with SH3 domain 99.9 3E-22 1E-26 200.2 12.6 168 180-362 320-492 (497)
136 2cxx_A Probable GTP-binding pr 99.9 1.7E-21 5.7E-26 169.1 15.7 163 183-356 2-186 (190)
137 4dcu_A GTP-binding protein ENG 99.9 9.2E-22 3.1E-26 194.2 15.7 162 3-164 196-369 (456)
138 3t5g_A GTP-binding protein RHE 99.9 1.2E-22 4.1E-27 175.1 8.2 150 3-164 7-169 (181)
139 2zej_A Dardarin, leucine-rich 99.9 1.3E-21 4.5E-26 169.3 14.7 163 182-355 2-179 (184)
140 2fv8_A H6, RHO-related GTP-bin 99.9 6.2E-22 2.1E-26 174.7 12.8 163 180-355 23-201 (207)
141 3j2k_7 ERF3, eukaryotic polype 99.9 2.2E-21 7.6E-26 190.0 17.6 156 180-346 15-217 (439)
142 3q3j_B RHO-related GTP-binding 99.9 3.6E-22 1.2E-26 177.2 11.0 161 180-356 25-205 (214)
143 2g6b_A RAS-related protein RAB 99.9 1.8E-21 6.1E-26 167.4 15.0 152 3-164 11-174 (180)
144 1vg8_A RAS-related protein RAB 99.9 6.4E-22 2.2E-26 174.3 12.3 160 180-354 6-175 (207)
145 3b1v_A Ferrous iron uptake tra 99.9 5.2E-22 1.8E-26 181.9 12.1 154 2-163 3-163 (272)
146 3oes_A GTPase rhebl1; small GT 99.9 9E-23 3.1E-27 179.2 6.8 161 180-357 22-190 (201)
147 2atv_A RERG, RAS-like estrogen 99.9 4.2E-21 1.5E-25 167.8 17.1 156 181-354 27-191 (196)
148 2wjg_A FEOB, ferrous iron tran 99.9 3.8E-21 1.3E-25 166.7 16.3 157 3-166 8-171 (188)
149 2f7s_A C25KG, RAS-related prot 99.9 8.5E-22 2.9E-26 175.1 12.4 159 180-354 23-199 (217)
150 3cpj_B GTP-binding protein YPT 99.9 2.8E-22 9.4E-27 179.1 9.3 161 180-356 11-178 (223)
151 1r8s_A ADP-ribosylation factor 99.9 1.5E-21 5.3E-26 165.2 13.1 149 3-164 1-162 (164)
152 3lxw_A GTPase IMAP family memb 99.9 3.8E-21 1.3E-25 174.2 16.3 182 180-365 19-219 (247)
153 1puj_A YLQF, conserved hypothe 99.9 1.1E-21 3.7E-26 180.6 12.4 172 55-244 4-179 (282)
154 3tkl_A RAS-related protein RAB 99.9 3.3E-21 1.1E-25 168.2 14.8 151 3-164 17-179 (196)
155 1zd9_A ADP-ribosylation factor 99.9 4.8E-21 1.6E-25 166.3 15.6 150 3-164 23-185 (188)
156 2yc2_C IFT27, small RAB-relate 99.9 6.7E-22 2.3E-26 174.2 10.3 160 180-354 18-192 (208)
157 1wms_A RAB-9, RAB9, RAS-relate 99.9 4.3E-21 1.5E-25 164.6 15.0 152 3-164 8-174 (177)
158 2aka_B Dynamin-1; fusion prote 99.9 2.9E-22 9.9E-27 187.2 8.1 214 151-375 4-283 (299)
159 2il1_A RAB12; G-protein, GDP, 99.9 3.9E-21 1.3E-25 167.5 14.8 150 3-162 27-188 (192)
160 3q72_A GTP-binding protein RAD 99.9 2.2E-21 7.5E-26 164.6 12.6 148 2-162 2-162 (166)
161 3gj0_A GTP-binding nuclear pro 99.9 3.4E-22 1.2E-26 178.2 7.9 160 180-355 13-176 (221)
162 1fzq_A ADP-ribosylation factor 99.9 5.8E-21 2E-25 164.8 15.4 149 3-164 17-178 (181)
163 2e87_A Hypothetical protein PH 99.9 7.7E-21 2.6E-25 181.7 17.8 181 180-369 165-351 (357)
164 1kao_A RAP2A; GTP-binding prot 99.9 3.2E-21 1.1E-25 163.3 13.4 148 3-162 4-164 (167)
165 2nzj_A GTP-binding protein REM 99.9 2.1E-21 7.1E-26 166.1 12.4 152 3-164 5-169 (175)
166 2hxs_A RAB-26, RAS-related pro 99.9 1.7E-21 5.7E-26 167.3 11.7 152 3-165 7-174 (178)
167 3t5d_A Septin-7; GTP-binding p 99.9 4.2E-21 1.4E-25 176.8 15.0 171 181-353 7-203 (274)
168 2hup_A RAS-related protein RAB 99.9 4.9E-21 1.7E-25 168.1 14.2 152 3-164 30-193 (201)
169 2efe_B Small GTP-binding prote 99.9 7.6E-21 2.6E-25 163.6 15.0 152 3-165 13-176 (181)
170 1zj6_A ADP-ribosylation factor 99.9 5.9E-21 2E-25 165.5 14.4 150 3-166 17-180 (187)
171 3tw8_B RAS-related protein RAB 99.9 1.4E-21 4.9E-26 168.0 10.4 152 3-165 10-172 (181)
172 1m7b_A RND3/RHOE small GTP-bin 99.9 4.4E-22 1.5E-26 172.2 7.2 161 180-353 5-182 (184)
173 1upt_A ARL1, ADP-ribosylation 99.9 2.2E-21 7.5E-26 165.3 11.4 148 3-164 8-169 (171)
174 3geh_A MNME, tRNA modification 99.9 7.4E-22 2.5E-26 193.5 9.4 160 3-165 225-385 (462)
175 3sjy_A Translation initiation 99.9 1.1E-20 3.8E-25 183.5 17.6 165 180-355 6-193 (403)
176 1u8z_A RAS-related protein RAL 99.9 7.3E-21 2.5E-25 161.3 14.4 149 3-163 5-166 (168)
177 1c1y_A RAS-related protein RAP 99.9 5.4E-21 1.9E-25 162.1 13.6 150 3-163 4-166 (167)
178 3cbq_A GTP-binding protein REM 99.9 9E-21 3.1E-25 165.6 15.2 152 3-164 24-188 (195)
179 1ksh_A ARF-like protein 2; sma 99.9 4.9E-21 1.7E-25 165.8 13.4 149 3-164 19-180 (186)
180 2h57_A ADP-ribosylation factor 99.9 2.5E-21 8.4E-26 168.4 11.5 151 3-164 22-187 (190)
181 3k53_A Ferrous iron transport 99.9 6.9E-21 2.4E-25 175.1 15.0 156 3-163 4-165 (271)
182 2g3y_A GTP-binding protein GEM 99.9 7.3E-21 2.5E-25 167.9 14.5 152 3-163 38-202 (211)
183 1z0f_A RAB14, member RAS oncog 99.9 9.8E-21 3.4E-25 162.4 14.9 149 3-163 16-177 (179)
184 2elf_A Protein translation elo 99.9 1.6E-20 5.3E-25 179.5 17.8 149 184-354 23-180 (370)
185 2y8e_A RAB-protein 6, GH09086P 99.9 4.3E-21 1.5E-25 164.7 12.5 151 3-164 15-177 (179)
186 1ek0_A Protein (GTP-binding pr 99.8 6.8E-21 2.3E-25 161.9 13.6 151 3-164 4-169 (170)
187 4dsu_A GTPase KRAS, isoform 2B 99.8 1.3E-20 4.3E-25 163.3 15.5 151 3-165 5-167 (189)
188 3lxx_A GTPase IMAP family memb 99.8 2.6E-20 9.1E-25 168.1 18.2 179 180-362 27-222 (239)
189 3q85_A GTP-binding protein REM 99.8 1.1E-20 3.6E-25 160.8 14.6 150 2-162 2-165 (169)
190 4bas_A ADP-ribosylation factor 99.8 4.4E-21 1.5E-25 167.8 12.6 150 3-164 18-189 (199)
191 2b6h_A ADP-ribosylation factor 99.8 8E-21 2.7E-25 165.5 14.1 149 3-164 30-191 (192)
192 2fu5_C RAS-related protein RAB 99.8 1E-21 3.5E-26 169.5 8.2 152 3-165 9-172 (183)
193 3kkq_A RAS-related protein M-R 99.8 1.3E-20 4.3E-25 162.6 15.1 148 3-162 19-180 (183)
194 1r2q_A RAS-related protein RAB 99.8 7.9E-21 2.7E-25 161.5 13.6 151 3-164 7-169 (170)
195 2ew1_A RAS-related protein RAB 99.8 4.9E-21 1.7E-25 168.1 12.5 151 3-164 27-189 (201)
196 1kk1_A EIF2gamma; initiation o 99.8 4E-20 1.4E-24 180.0 20.1 164 180-354 8-200 (410)
197 1z08_A RAS-related protein RAB 99.8 3.6E-21 1.2E-25 163.8 11.1 150 3-163 7-168 (170)
198 1f6b_A SAR1; gtpases, N-termin 99.8 3.7E-21 1.3E-25 168.5 11.5 147 3-162 26-197 (198)
199 2fg5_A RAB-22B, RAS-related pr 99.8 2.9E-21 1E-25 168.2 10.7 152 3-165 24-187 (192)
200 1z06_A RAS-related protein RAB 99.8 1.1E-20 3.7E-25 164.1 14.3 150 3-163 21-187 (189)
201 2fn4_A P23, RAS-related protei 99.8 1.2E-20 4.2E-25 162.1 14.4 150 3-164 10-172 (181)
202 3reg_A RHO-like small GTPase; 99.8 3.9E-21 1.3E-25 167.7 11.4 152 3-165 24-189 (194)
203 2ce2_X GTPase HRAS; signaling 99.8 2.5E-20 8.6E-25 157.5 16.1 151 1-163 1-164 (166)
204 1z0j_A RAB-22, RAS-related pro 99.8 1.3E-20 4.4E-25 160.3 14.3 151 3-164 7-169 (170)
205 2bov_A RAla, RAS-related prote 99.8 2E-20 6.7E-25 164.6 15.6 150 3-164 15-177 (206)
206 3th5_A RAS-related C3 botulinu 99.8 7.3E-23 2.5E-27 180.2 0.0 159 180-351 28-202 (204)
207 2a9k_A RAS-related protein RAL 99.8 2E-20 6.7E-25 161.7 15.2 149 3-163 19-180 (187)
208 2bme_A RAB4A, RAS-related prot 99.8 8.2E-21 2.8E-25 164.2 12.8 151 3-164 11-173 (186)
209 3cph_A RAS-related protein SEC 99.8 7.6E-21 2.6E-25 168.2 12.8 152 3-165 21-183 (213)
210 3clv_A RAB5 protein, putative; 99.8 1.1E-20 3.9E-25 165.7 13.8 150 3-163 8-203 (208)
211 1zbd_A Rabphilin-3A; G protein 99.8 2.1E-20 7E-25 164.2 15.4 151 3-164 9-171 (203)
212 1gwn_A RHO-related GTP-binding 99.8 1.1E-21 3.6E-26 173.0 7.1 161 180-353 26-203 (205)
213 3tr5_A RF-3, peptide chain rel 99.8 7.3E-21 2.5E-25 189.5 13.9 117 181-308 12-149 (528)
214 3bc1_A RAS-related protein RAB 99.8 1.4E-20 4.8E-25 163.7 14.1 151 3-164 12-185 (195)
215 1z2a_A RAS-related protein RAB 99.8 5.7E-21 1.9E-25 162.2 11.2 150 3-163 6-166 (168)
216 2p5s_A RAS and EF-hand domain 99.8 1.7E-20 5.8E-25 164.4 14.6 151 3-164 29-197 (199)
217 1g16_A RAS-related protein SEC 99.8 4E-21 1.4E-25 163.4 10.2 151 3-164 4-165 (170)
218 2h17_A ADP-ribosylation factor 99.8 5.7E-21 1.9E-25 164.8 11.2 145 3-161 22-180 (181)
219 2a5j_A RAS-related protein RAB 99.8 6.8E-21 2.3E-25 165.7 11.7 151 3-164 22-184 (191)
220 2erx_A GTP-binding protein DI- 99.8 3.2E-20 1.1E-24 158.1 15.4 150 3-164 4-167 (172)
221 3qq5_A Small GTP-binding prote 99.8 1.6E-21 5.5E-26 188.6 8.2 159 2-165 34-197 (423)
222 2xtp_A GTPase IMAP family memb 99.8 1.3E-20 4.4E-25 172.4 13.7 161 3-165 23-209 (260)
223 3l0i_B RAS-related protein RAB 99.8 2.5E-23 8.5E-28 182.5 -4.2 159 180-354 31-196 (199)
224 1lnz_A SPO0B-associated GTP-bi 99.8 7.3E-21 2.5E-25 179.4 12.3 165 183-357 159-333 (342)
225 1m2o_B GTP-binding protein SAR 99.8 2E-20 6.9E-25 162.7 13.7 146 3-161 24-189 (190)
226 1ky3_A GTP-binding protein YPT 99.8 1.4E-20 4.8E-25 161.9 12.5 151 3-163 9-177 (182)
227 2bcg_Y Protein YP2, GTP-bindin 99.8 1.1E-20 3.7E-25 166.5 12.0 152 3-165 9-172 (206)
228 2o52_A RAS-related protein RAB 99.8 8.5E-21 2.9E-25 166.5 11.3 151 3-164 26-188 (200)
229 4gzl_A RAS-related C3 botulinu 99.8 2.9E-21 9.8E-26 170.1 8.2 149 3-162 31-203 (204)
230 1mh1_A RAC1; GTP-binding, GTPa 99.8 9E-21 3.1E-25 163.8 11.2 152 3-165 6-181 (186)
231 2c78_A Elongation factor TU-A; 99.8 7.4E-21 2.5E-25 184.9 11.8 151 180-341 9-181 (405)
232 3con_A GTPase NRAS; structural 99.8 4.6E-20 1.6E-24 160.2 15.6 150 3-164 22-183 (190)
233 1f60_A Elongation factor EEF1A 99.8 3.9E-22 1.3E-26 196.4 2.5 154 181-345 6-203 (458)
234 2atx_A Small GTP binding prote 99.8 9.9E-21 3.4E-25 165.1 11.1 149 3-162 19-191 (194)
235 3dz8_A RAS-related protein RAB 99.8 3.7E-21 1.3E-25 167.4 8.2 150 3-163 24-185 (191)
236 2gf9_A RAS-related protein RAB 99.8 1E-20 3.4E-25 164.3 10.8 151 3-164 23-185 (189)
237 1d2e_A Elongation factor TU (E 99.8 1.7E-20 5.7E-25 181.8 13.3 162 181-353 2-194 (397)
238 3p26_A Elongation factor 1 alp 99.8 1.9E-20 6.7E-25 185.8 13.9 156 180-346 31-230 (483)
239 2q3h_A RAS homolog gene family 99.8 1.4E-20 4.9E-25 165.0 11.3 151 3-164 21-195 (201)
240 2oil_A CATX-8, RAS-related pro 99.8 3.2E-20 1.1E-24 161.7 13.3 151 3-164 26-188 (193)
241 1s0u_A EIF-2-gamma, translatio 99.8 7.7E-20 2.6E-24 177.8 17.4 163 181-354 7-198 (408)
242 2iwr_A Centaurin gamma 1; ANK 99.8 6.1E-20 2.1E-24 157.6 14.8 145 3-164 8-169 (178)
243 2cjw_A GTP-binding protein GEM 99.8 1.9E-20 6.4E-25 163.2 11.7 152 3-163 7-171 (192)
244 2j1l_A RHO-related GTP-binding 99.8 3.8E-20 1.3E-24 164.1 13.8 151 3-164 35-209 (214)
245 1vg8_A RAS-related protein RAB 99.8 1.3E-20 4.6E-25 165.9 10.8 153 3-165 9-176 (207)
246 2f7s_A C25KG, RAS-related prot 99.8 3.9E-20 1.3E-24 164.3 13.9 149 3-164 26-199 (217)
247 1zun_B Sulfate adenylate trans 99.8 4.9E-20 1.7E-24 180.6 15.8 155 181-346 23-216 (434)
248 3cpj_B GTP-binding protein YPT 99.8 8.7E-21 3E-25 169.4 9.5 152 3-165 14-177 (223)
249 2wkq_A NPH1-1, RAS-related C3 99.8 1.9E-20 6.3E-25 177.4 12.1 161 180-353 153-329 (332)
250 3t1o_A Gliding protein MGLA; G 99.8 1E-20 3.4E-25 165.1 9.1 153 3-164 15-192 (198)
251 2fh5_B SR-beta, signal recogni 99.8 6.5E-20 2.2E-24 162.5 14.4 146 2-161 7-213 (214)
252 2gf0_A GTP-binding protein DI- 99.8 1.1E-19 3.8E-24 158.9 15.6 151 3-165 9-172 (199)
253 3ihw_A Centg3; RAS, centaurin, 99.8 1.8E-19 6.3E-24 155.8 16.5 144 3-163 21-179 (184)
254 3cb4_D GTP-binding protein LEP 99.8 9.5E-20 3.2E-24 183.4 16.7 162 181-355 3-183 (599)
255 2qtf_A Protein HFLX, GTP-bindi 99.8 2.4E-19 8.3E-24 170.7 18.7 168 184-356 181-356 (364)
256 2gco_A H9, RHO-related GTP-bin 99.8 2.9E-20 9.9E-25 163.2 11.5 148 3-162 26-198 (201)
257 3o47_A ADP-ribosylation factor 99.8 2.9E-20 1E-24 175.4 12.1 149 3-164 166-327 (329)
258 3lxw_A GTPase IMAP family memb 99.8 8.4E-20 2.9E-24 165.4 14.6 161 3-165 22-209 (247)
259 1moz_A ARL1, ADP-ribosylation 99.8 2.9E-20 9.8E-25 160.4 10.9 148 3-163 19-179 (183)
260 2atv_A RERG, RAS-like estrogen 99.8 1.3E-19 4.5E-24 158.2 15.1 148 3-163 29-190 (196)
261 3cb4_D GTP-binding protein LEP 99.8 3.3E-20 1.1E-24 186.7 12.8 185 2-205 4-216 (599)
262 3gj0_A GTP-binding nuclear pro 99.8 3.9E-21 1.3E-25 171.4 5.3 154 3-166 16-177 (221)
263 3q3j_B RHO-related GTP-binding 99.8 1.7E-20 5.7E-25 166.4 9.3 152 3-165 28-204 (214)
264 2ywe_A GTP-binding protein LEP 99.8 8.7E-20 3E-24 183.3 15.6 162 181-355 5-185 (600)
265 2x77_A ADP-ribosylation factor 99.8 1.2E-20 4E-25 163.9 8.1 148 3-164 23-184 (189)
266 3c5c_A RAS-like protein 12; GD 99.8 4.4E-20 1.5E-24 160.1 11.6 147 3-162 22-184 (187)
267 2yc2_C IFT27, small RAB-relate 99.8 1E-20 3.6E-25 166.6 7.6 152 3-164 21-192 (208)
268 2fv8_A H6, RHO-related GTP-bin 99.8 2.8E-20 9.4E-25 164.1 10.3 151 3-164 26-200 (207)
269 3bwd_D RAC-like GTP-binding pr 99.8 5.1E-21 1.8E-25 164.8 5.2 150 3-163 9-180 (182)
270 3llu_A RAS-related GTP-binding 99.8 4.7E-20 1.6E-24 161.2 11.1 148 2-162 20-195 (196)
271 3j2k_7 ERF3, eukaryotic polype 99.8 2.8E-19 9.7E-24 175.0 17.8 145 3-156 18-217 (439)
272 2j0v_A RAC-like GTP-binding pr 99.8 1.3E-20 4.5E-25 166.7 7.5 152 3-165 10-181 (212)
273 2cxx_A Probable GTP-binding pr 99.8 2.1E-19 7.2E-24 155.8 14.9 159 2-165 1-185 (190)
274 4djt_A GTP-binding nuclear pro 99.8 2.2E-20 7.7E-25 166.0 8.9 154 3-166 12-177 (218)
275 3izy_P Translation initiation 99.8 1.2E-21 4.2E-26 194.2 0.5 161 181-354 3-168 (537)
276 3r7w_A Gtpase1, GTP-binding pr 99.8 1.4E-19 4.8E-24 169.2 14.4 157 3-165 4-182 (307)
277 1lnz_A SPO0B-associated GTP-bi 99.8 2.7E-20 9.3E-25 175.5 9.6 162 2-166 158-332 (342)
278 1pui_A ENGB, probable GTP-bind 99.8 5.6E-19 1.9E-23 155.9 17.2 172 180-354 24-199 (210)
279 1jwy_B Dynamin A GTPase domain 99.8 2.3E-19 7.9E-24 168.7 15.1 191 181-373 23-287 (315)
280 3mca_A HBS1, elongation factor 99.8 4E-21 1.4E-25 194.3 3.0 153 180-343 175-372 (592)
281 3oes_A GTPase rhebl1; small GT 99.8 1.5E-20 5.2E-25 164.9 6.2 151 3-165 25-188 (201)
282 3izq_1 HBS1P, elongation facto 99.8 2.8E-20 9.6E-25 188.6 9.1 155 180-345 165-363 (611)
283 3t5d_A Septin-7; GTP-binding p 99.8 1.6E-19 5.3E-24 166.3 13.1 159 3-163 9-203 (274)
284 3r7w_B Gtpase2, GTP-binding pr 99.8 2.8E-19 9.6E-24 165.5 14.2 158 184-352 1-172 (331)
285 3l0i_B RAS-related protein RAB 99.8 1.6E-21 5.5E-26 170.9 -1.0 151 3-164 34-196 (199)
286 2e87_A Hypothetical protein PH 99.8 5.7E-19 1.9E-23 168.7 16.5 160 3-164 168-336 (357)
287 1wb1_A Translation elongation 99.8 1.6E-19 5.3E-24 178.7 12.4 152 3-163 20-188 (482)
288 3tr5_A RF-3, peptide chain rel 99.8 1.3E-19 4.5E-24 180.4 11.4 117 2-127 13-150 (528)
289 2aka_B Dynamin-1; fusion prote 99.8 3.1E-19 1E-23 166.6 12.9 159 2-160 26-249 (299)
290 1jny_A EF-1-alpha, elongation 99.8 1.4E-19 4.8E-24 177.3 10.7 155 181-346 5-205 (435)
291 3izy_P Translation initiation 99.8 6.1E-21 2.1E-25 189.2 1.0 188 2-199 4-211 (537)
292 3lvq_E ARF-GAP with SH3 domain 99.8 2.1E-19 7.3E-24 179.6 11.9 151 3-166 323-486 (497)
293 1m7b_A RND3/RHOE small GTP-bin 99.8 1.2E-19 4.1E-24 156.9 8.6 149 3-162 8-181 (184)
294 3avx_A Elongation factor TS, e 99.8 3.5E-19 1.2E-23 186.8 13.3 163 180-353 294-485 (1289)
295 3lxx_A GTPase IMAP family memb 99.8 1.2E-18 4.2E-23 157.1 15.0 159 3-164 30-214 (239)
296 2qtf_A Protein HFLX, GTP-bindi 99.8 1.3E-18 4.4E-23 165.7 15.7 160 3-164 180-354 (364)
297 3th5_A RAS-related C3 botulinu 99.7 6.9E-21 2.4E-25 167.5 0.0 148 3-161 31-202 (204)
298 2x2e_A Dynamin-1; nitration, h 99.8 1.2E-19 4.2E-24 173.0 8.7 211 150-372 8-285 (353)
299 3c5h_A Glucocorticoid receptor 99.8 9.8E-20 3.3E-24 165.8 7.5 169 180-353 17-254 (255)
300 2zej_A Dardarin, leucine-rich 99.8 2.2E-19 7.6E-24 155.2 9.4 155 2-165 2-179 (184)
301 1zo1_I IF2, translation initia 99.8 1.1E-20 3.9E-25 185.7 1.0 157 181-350 3-163 (501)
302 1g7s_A Translation initiation 99.8 3.9E-19 1.3E-23 179.1 11.9 162 181-355 4-219 (594)
303 1gwn_A RHO-related GTP-binding 99.8 1.9E-19 6.5E-24 158.5 8.3 149 3-162 29-202 (205)
304 3cnl_A YLQF, putative uncharac 99.8 5.1E-20 1.7E-24 167.6 4.2 142 74-244 13-158 (262)
305 1r5b_A Eukaryotic peptide chai 99.8 1.1E-19 3.7E-24 179.4 6.6 156 180-346 41-244 (467)
306 2j69_A Bacterial dynamin-like 99.8 4.9E-19 1.7E-23 182.4 11.8 168 180-355 67-326 (695)
307 2ywe_A GTP-binding protein LEP 99.8 9.9E-19 3.4E-23 175.6 13.2 154 3-165 7-185 (600)
308 2h5e_A Peptide chain release f 99.8 3.2E-18 1.1E-22 170.6 16.8 118 181-309 12-150 (529)
309 2f9l_A RAB11B, member RAS onco 99.8 9.9E-19 3.4E-23 153.1 11.4 158 181-354 4-168 (199)
310 3dpu_A RAB family protein; roc 99.8 1E-18 3.6E-23 175.8 12.1 186 148-356 13-210 (535)
311 1wxq_A GTP-binding protein; st 99.8 9.4E-20 3.2E-24 175.5 4.1 90 183-277 1-114 (397)
312 3sjy_A Translation initiation 99.8 1.9E-18 6.6E-23 167.7 13.1 154 3-165 9-193 (403)
313 2wkq_A NPH1-1, RAS-related C3 99.8 7E-19 2.4E-23 166.5 9.7 150 3-163 156-329 (332)
314 1s0u_A EIF-2-gamma, translatio 99.8 1.3E-17 4.3E-22 162.2 18.8 154 3-165 9-199 (408)
315 1kk1_A EIF2gamma; initiation o 99.8 5.9E-18 2E-22 164.7 16.1 154 3-165 11-201 (410)
316 2c78_A Elongation factor TU-A; 99.8 1.4E-18 4.7E-23 168.9 11.4 154 3-165 12-213 (405)
317 1jwy_B Dynamin A GTPase domain 99.8 4.6E-18 1.6E-22 159.8 14.6 165 2-166 24-264 (315)
318 2elf_A Protein translation elo 99.8 9.4E-19 3.2E-23 167.2 9.8 141 4-164 23-180 (370)
319 1oix_A RAS-related protein RAB 99.8 3.2E-18 1.1E-22 148.9 11.8 157 180-352 27-190 (191)
320 1dar_A EF-G, elongation factor 99.8 1.2E-17 4.1E-22 172.0 17.1 118 180-308 10-144 (691)
321 3p26_A Elongation factor 1 alp 99.8 2.6E-18 9E-23 170.5 11.6 142 3-153 34-227 (483)
322 2xex_A Elongation factor G; GT 99.8 1.7E-17 5.9E-22 170.9 18.1 118 180-308 8-142 (693)
323 1zun_B Sulfate adenylate trans 99.8 6.1E-18 2.1E-22 165.7 14.0 143 3-154 25-214 (434)
324 3def_A T7I23.11 protein; chlor 99.7 1.4E-17 4.7E-22 152.2 15.1 123 181-307 35-165 (262)
325 1d2e_A Elongation factor TU (E 99.7 3.7E-18 1.3E-22 165.3 11.8 153 3-164 4-195 (397)
326 3vqt_A RF-3, peptide chain rel 99.7 2E-17 6.7E-22 165.7 16.7 118 180-308 29-167 (548)
327 1h65_A Chloroplast outer envel 99.7 3.2E-17 1.1E-21 150.6 16.4 127 181-309 38-170 (270)
328 3zvr_A Dynamin-1; hydrolase, D 99.7 5.2E-18 1.8E-22 173.4 11.8 218 142-372 17-305 (772)
329 2rdo_7 EF-G, elongation factor 99.7 4.2E-17 1.4E-21 168.1 18.7 117 181-308 9-149 (704)
330 2dy1_A Elongation factor G; tr 99.7 2.9E-17 9.8E-22 168.6 17.3 116 180-306 7-139 (665)
331 1zo1_I IF2, translation initia 99.7 1.4E-19 4.6E-24 178.1 0.0 150 2-161 4-164 (501)
332 3izq_1 HBS1P, elongation facto 99.7 2.4E-18 8.1E-23 174.5 8.9 143 3-154 168-362 (611)
333 3r7w_B Gtpase2, GTP-binding pr 99.7 3.7E-18 1.3E-22 158.0 9.0 153 4-165 1-175 (331)
334 3mca_A HBS1, elongation factor 99.7 2.1E-19 7.1E-24 181.7 -0.3 153 3-164 178-397 (592)
335 2f9l_A RAB11B, member RAS onco 99.7 2.2E-17 7.6E-22 144.4 12.2 151 3-164 6-168 (199)
336 1nrj_B SR-beta, signal recogni 99.7 3.8E-18 1.3E-22 151.5 7.0 143 180-340 10-170 (218)
337 2qag_A Septin-2, protein NEDD5 99.7 5.2E-17 1.8E-21 154.9 15.2 166 181-353 36-232 (361)
338 1wxq_A GTP-binding protein; st 99.7 9.4E-19 3.2E-23 168.5 2.9 160 4-167 2-274 (397)
339 1f60_A Elongation factor EEF1A 99.7 8.2E-18 2.8E-22 165.5 9.2 142 3-153 8-201 (458)
340 4a9a_A Ribosome-interacting GT 99.7 1.6E-16 5.6E-21 150.6 17.1 118 181-305 71-194 (376)
341 1g7s_A Translation initiation 99.7 5.3E-18 1.8E-22 170.9 6.6 151 2-163 5-217 (594)
342 3def_A T7I23.11 protein; chlor 99.7 7.1E-17 2.4E-21 147.5 13.6 123 3-127 37-167 (262)
343 2qm8_A GTPase/ATPase; G protei 99.7 1.3E-18 4.5E-23 164.3 2.1 203 181-401 54-319 (337)
344 2x2e_A Dynamin-1; nitration, h 99.7 2.9E-17 1E-21 156.6 11.3 159 2-160 31-254 (353)
345 2h5e_A Peptide chain release f 99.7 7.9E-17 2.7E-21 160.6 14.5 116 3-127 14-150 (529)
346 1u0l_A Probable GTPase ENGC; p 99.7 1E-17 3.5E-22 155.9 7.2 189 17-244 32-235 (301)
347 3dpu_A RAB family protein; roc 99.7 1.5E-17 5.2E-22 167.3 8.7 151 3-166 42-210 (535)
348 1jny_A EF-1-alpha, elongation 99.7 1.1E-17 3.7E-22 163.9 7.3 142 3-153 7-202 (435)
349 1h65_A Chloroplast outer envel 99.7 9.6E-17 3.3E-21 147.3 13.2 124 3-128 40-171 (270)
350 1oix_A RAS-related protein RAB 99.7 7.1E-17 2.4E-21 140.3 11.4 149 3-162 30-190 (191)
351 2www_A Methylmalonic aciduria 99.7 4.5E-17 1.5E-21 154.6 10.8 156 181-354 73-279 (349)
352 4a9a_A Ribosome-interacting GT 99.7 1.4E-16 4.7E-21 151.1 14.0 117 3-123 73-194 (376)
353 3avx_A Elongation factor TS, e 99.7 6.6E-17 2.3E-21 169.8 12.4 153 3-164 297-486 (1289)
354 1dar_A EF-G, elongation factor 99.7 2.3E-16 7.8E-21 162.5 15.8 116 3-127 13-145 (691)
355 1udx_A The GTP-binding protein 99.7 8.2E-16 2.8E-20 148.2 18.4 163 183-356 158-327 (416)
356 1pui_A ENGB, probable GTP-bind 99.7 2.6E-16 9E-21 138.6 13.4 160 3-165 27-200 (210)
357 2ged_A SR-beta, signal recogni 99.7 9.1E-17 3.1E-21 139.6 10.2 152 146-320 21-183 (193)
358 2j69_A Bacterial dynamin-like 99.7 1.1E-16 3.8E-21 164.9 12.2 156 3-164 70-325 (695)
359 3p32_A Probable GTPase RV1496/ 99.7 1.9E-17 6.4E-22 157.9 5.8 155 181-354 78-284 (355)
360 2xex_A Elongation factor G; GT 99.7 2.3E-16 7.9E-21 162.5 14.2 116 3-127 11-143 (693)
361 1nrj_B SR-beta, signal recogni 99.7 3.7E-17 1.3E-21 145.1 6.9 132 2-150 12-170 (218)
362 2rdo_7 EF-G, elongation factor 99.7 9.9E-16 3.4E-20 157.9 18.3 116 2-126 10-149 (704)
363 1r5b_A Eukaryotic peptide chai 99.7 2.4E-17 8.1E-22 162.7 6.0 144 3-155 44-243 (467)
364 3zvr_A Dynamin-1; hydrolase, D 99.7 3.3E-16 1.1E-20 160.2 14.3 158 2-160 51-274 (772)
365 2dy1_A Elongation factor G; tr 99.7 7.2E-16 2.5E-20 158.2 15.5 113 3-124 10-139 (665)
366 3c5h_A Glucocorticoid receptor 99.7 1.5E-17 5.3E-22 151.2 2.7 80 82-162 162-253 (255)
367 3t34_A Dynamin-related protein 99.7 3.5E-16 1.2E-20 149.6 12.1 163 181-347 33-254 (360)
368 1n0u_A EF-2, elongation factor 99.7 4E-16 1.4E-20 163.9 13.0 115 181-306 18-163 (842)
369 3vqt_A RF-3, peptide chain rel 99.7 6.7E-16 2.3E-20 154.6 13.9 117 2-127 31-168 (548)
370 3j25_A Tetracycline resistance 99.7 5.9E-17 2E-21 165.5 6.2 161 183-355 3-240 (638)
371 2p67_A LAO/AO transport system 99.6 3.8E-16 1.3E-20 147.9 9.1 156 180-353 54-260 (341)
372 3t34_A Dynamin-related protein 99.6 1.6E-15 5.5E-20 145.0 13.2 154 2-157 34-254 (360)
373 2qnr_A Septin-2, protein NEDD5 99.6 2.9E-15 9.8E-20 139.3 14.0 167 181-354 17-214 (301)
374 2qag_C Septin-7; cell cycle, c 99.6 1.8E-15 6E-20 146.0 12.6 169 181-352 30-225 (418)
375 1jal_A YCHF protein; nucleotid 99.6 2.9E-15 1E-19 141.2 13.1 89 183-276 3-108 (363)
376 1jal_A YCHF protein; nucleotid 99.6 3.1E-15 1.1E-19 141.0 12.9 91 1-94 1-108 (363)
377 4fn5_A EF-G 1, elongation fact 99.6 1.2E-14 4.3E-19 150.3 18.4 117 180-307 11-151 (709)
378 2qag_A Septin-2, protein NEDD5 99.6 1.1E-15 3.9E-20 145.6 9.6 155 3-160 38-229 (361)
379 2qpt_A EH domain-containing pr 99.6 3E-15 1E-19 150.0 12.8 136 180-318 63-243 (550)
380 1udx_A The GTP-binding protein 99.6 2.5E-15 8.5E-20 144.9 11.6 158 3-165 158-326 (416)
381 2wsm_A Hydrogenase expression/ 99.6 1.3E-15 4.4E-20 135.4 8.9 155 181-356 29-216 (221)
382 1yrb_A ATP(GTP)binding protein 99.6 7E-15 2.4E-19 134.2 12.2 170 180-355 12-258 (262)
383 2yv5_A YJEQ protein; hydrolase 99.6 4.4E-15 1.5E-19 138.1 10.4 140 78-244 75-230 (302)
384 2ged_A SR-beta, signal recogni 99.6 1.6E-15 5.6E-20 131.6 6.7 115 3-129 49-174 (193)
385 3j25_A Tetracycline resistance 99.6 1.3E-15 4.5E-20 155.6 6.6 156 2-166 2-241 (638)
386 2dby_A GTP-binding protein; GD 99.6 1.7E-14 5.9E-19 136.9 13.3 184 183-374 2-281 (368)
387 2qpt_A EH domain-containing pr 99.5 1.3E-14 4.4E-19 145.5 11.2 128 2-129 65-236 (550)
388 2www_A Methylmalonic aciduria 99.5 9.2E-15 3.2E-19 138.7 5.3 144 3-162 75-277 (349)
389 3p32_A Probable GTPase RV1496/ 99.5 9.1E-15 3.1E-19 139.3 5.2 146 3-164 80-284 (355)
390 1t9h_A YLOQ, probable GTPase E 99.5 1.1E-14 3.9E-19 134.4 5.1 138 79-244 83-238 (307)
391 2qag_C Septin-7; cell cycle, c 99.5 9.3E-14 3.2E-18 134.0 11.2 158 3-163 32-226 (418)
392 4fn5_A EF-G 1, elongation fact 99.5 2E-13 6.7E-18 141.4 14.0 115 3-126 14-152 (709)
393 2dby_A GTP-binding protein; GD 99.5 1.1E-13 3.7E-18 131.4 10.6 89 3-94 2-111 (368)
394 1n0u_A EF-2, elongation factor 99.5 4.6E-14 1.6E-18 148.3 8.2 114 3-125 20-164 (842)
395 1cip_A Protein (guanine nucleo 99.5 9.3E-14 3.2E-18 131.3 8.2 123 222-355 185-345 (353)
396 2qnr_A Septin-2, protein NEDD5 99.4 2.6E-13 9E-18 126.0 10.8 159 3-164 19-214 (301)
397 2p67_A LAO/AO transport system 99.4 1E-13 3.5E-18 131.2 6.7 144 3-162 57-259 (341)
398 1yrb_A ATP(GTP)binding protein 99.4 6.5E-14 2.2E-18 127.7 4.9 159 3-165 15-258 (262)
399 3ohm_A Guanine nucleotide-bind 99.4 6.4E-13 2.2E-17 123.7 10.7 126 220-356 157-320 (327)
400 4fid_A G protein alpha subunit 99.4 1E-12 3.5E-17 122.8 11.9 124 220-354 151-328 (340)
401 2hf9_A Probable hydrogenase ni 99.4 1.6E-12 5.6E-17 115.6 11.1 154 181-355 37-225 (226)
402 2wsm_A Hydrogenase expression/ 99.4 1.7E-13 5.7E-18 121.6 4.2 148 2-165 30-215 (221)
403 2ohf_A Protein OLA1, GTP-bindi 99.4 3.9E-13 1.4E-17 127.9 6.5 157 181-355 21-196 (396)
404 2rcn_A Probable GTPase ENGC; Y 99.3 2.4E-12 8.3E-17 121.1 9.2 103 80-207 128-240 (358)
405 2qag_B Septin-6, protein NEDD5 99.3 1.6E-11 5.5E-16 117.9 14.0 150 183-334 43-216 (427)
406 3sop_A Neuronal-specific septi 99.3 9E-11 3.1E-15 107.0 15.0 141 182-323 2-170 (270)
407 2ohf_A Protein OLA1, GTP-bindi 99.3 4.6E-12 1.6E-16 120.6 6.6 90 2-94 22-128 (396)
408 3ec1_A YQEH GTPase; atnos1, at 99.3 1.4E-13 4.8E-18 131.5 -4.0 122 3-129 163-292 (369)
409 2j37_W Signal recognition part 99.2 2.1E-11 7.3E-16 120.0 10.8 185 181-373 100-338 (504)
410 2qm8_A GTPase/ATPase; G protei 99.2 5E-12 1.7E-16 119.1 5.8 145 3-163 56-260 (337)
411 1cip_A Protein (guanine nucleo 99.2 1.1E-11 3.8E-16 117.1 6.5 115 40-163 183-343 (353)
412 3ohm_A Guanine nucleotide-bind 99.2 3.3E-11 1.1E-15 112.2 8.6 115 40-164 157-318 (327)
413 3h2y_A GTPase family protein; 99.2 2.1E-13 7.3E-18 130.1 -6.5 123 3-129 161-291 (368)
414 1u0l_A Probable GTPase ENGC; p 99.2 6.6E-11 2.3E-15 109.9 10.4 136 197-350 32-169 (301)
415 1tq4_A IIGP1, interferon-induc 99.2 3.4E-10 1.2E-14 108.8 14.7 166 181-356 68-255 (413)
416 4fid_A G protein alpha subunit 99.1 3.6E-11 1.2E-15 112.3 5.6 117 39-164 150-328 (340)
417 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 6.1E-11 2.1E-15 113.2 7.2 90 3-94 21-127 (392)
418 2hf9_A Probable hydrogenase ni 99.1 2.9E-11 9.8E-16 107.5 4.6 52 111-162 164-222 (226)
419 1zcb_A G alpha I/13; GTP-bindi 99.1 1.1E-10 3.9E-15 110.6 8.3 124 220-354 191-353 (362)
420 2qag_B Septin-6, protein NEDD5 99.1 1.9E-10 6.5E-15 110.4 9.7 126 3-129 43-194 (427)
421 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 9.6E-11 3.3E-15 111.8 7.4 93 180-276 18-127 (392)
422 1azs_C GS-alpha; complex (lyas 99.1 5.8E-11 2E-15 113.5 5.5 122 222-354 209-385 (402)
423 2j37_W Signal recognition part 99.1 2.7E-10 9.1E-15 112.2 10.2 153 3-161 102-310 (504)
424 2xtz_A Guanine nucleotide-bind 99.0 6.4E-11 2.2E-15 111.9 3.2 115 229-354 182-345 (354)
425 1f5n_A Interferon-induced guan 99.0 5E-10 1.7E-14 112.0 8.9 101 181-290 37-146 (592)
426 1tq4_A IIGP1, interferon-induc 99.0 2.9E-09 1E-13 102.3 12.2 156 4-167 71-256 (413)
427 3sop_A Neuronal-specific septi 99.0 2.3E-09 8E-14 97.6 10.2 126 3-129 3-158 (270)
428 1f5n_A Interferon-induced guan 98.9 1.6E-09 5.3E-14 108.5 9.1 100 3-109 39-147 (592)
429 3dm5_A SRP54, signal recogniti 98.9 5.8E-08 2E-12 93.6 17.6 145 181-341 99-278 (443)
430 1zcb_A G alpha I/13; GTP-bindi 98.9 7.6E-10 2.6E-14 104.9 3.9 115 40-163 191-352 (362)
431 2v3c_C SRP54, signal recogniti 98.9 2.3E-10 7.7E-15 111.0 -0.1 163 181-354 98-311 (432)
432 1puj_A YLQF, conserved hypothe 98.7 3.3E-08 1.1E-12 90.5 10.2 91 256-353 15-105 (282)
433 2yv5_A YJEQ protein; hydrolase 98.7 3.1E-08 1.1E-12 91.7 8.8 89 260-350 75-165 (302)
434 2v3c_C SRP54, signal recogniti 98.7 7.8E-09 2.7E-13 100.2 4.4 118 4-127 101-254 (432)
435 3dm5_A SRP54, signal recogniti 98.7 1.2E-07 4.1E-12 91.4 12.5 143 3-153 101-280 (443)
436 1azs_C GS-alpha; complex (lyas 98.6 6.1E-09 2.1E-13 99.5 2.0 115 41-164 208-385 (402)
437 3kl4_A SRP54, signal recogniti 98.6 4E-07 1.4E-11 87.8 14.3 147 181-341 96-277 (433)
438 2xtz_A Guanine nucleotide-bind 98.5 1.5E-08 5.2E-13 95.6 1.7 106 49-163 182-344 (354)
439 3l82_B F-box only protein 4; T 98.5 4.5E-07 1.6E-11 77.6 8.5 95 260-355 121-224 (227)
440 3kl4_A SRP54, signal recogniti 98.5 3.2E-07 1.1E-11 88.5 8.5 141 4-152 99-278 (433)
441 3szr_A Interferon-induced GTP- 98.4 1.5E-06 5.3E-11 88.1 12.7 79 50-128 147-231 (608)
442 3cnl_A YLQF, putative uncharac 98.4 1.8E-07 6.3E-12 84.6 5.1 86 256-351 13-98 (262)
443 1j8m_F SRP54, signal recogniti 98.4 2.5E-06 8.5E-11 78.5 11.7 148 182-344 98-281 (297)
444 3l2o_B F-box only protein 4; s 98.3 2.5E-06 8.7E-11 76.6 9.0 95 260-355 206-309 (312)
445 3szr_A Interferon-induced GTP- 98.2 2.9E-06 1E-10 86.1 9.8 77 231-308 148-229 (608)
446 3l82_B F-box only protein 4; T 98.2 4.8E-06 1.6E-10 71.3 8.3 94 71-164 114-223 (227)
447 1j8m_F SRP54, signal recogniti 98.2 1.2E-05 4.2E-10 73.9 11.5 141 4-153 100-280 (297)
448 3q5d_A Atlastin-1; G protein, 98.2 1.1E-05 3.7E-10 78.1 11.4 101 4-109 69-195 (447)
449 3q5d_A Atlastin-1; G protein, 98.1 5.2E-06 1.8E-10 80.3 8.5 103 181-290 66-194 (447)
450 2xxa_A Signal recognition part 98.0 2.7E-05 9.3E-10 75.4 11.8 120 181-308 99-255 (433)
451 3e70_C DPA, signal recognition 98.0 2.1E-05 7.3E-10 73.2 8.9 148 181-344 128-310 (328)
452 3l2o_B F-box only protein 4; s 97.9 2.2E-05 7.4E-10 70.6 8.2 94 71-164 199-308 (312)
453 2xxa_A Signal recognition part 97.9 2.2E-05 7.7E-10 75.9 8.4 117 3-125 101-254 (433)
454 1t9h_A YLOQ, probable GTPase E 97.9 4.9E-06 1.7E-10 76.6 3.1 85 261-347 83-170 (307)
455 3e70_C DPA, signal recognition 97.8 2.5E-05 8.7E-10 72.7 6.6 97 49-153 211-309 (328)
456 1rj9_A FTSY, signal recognitio 97.7 0.00015 5.1E-09 66.8 10.2 124 181-307 101-261 (304)
457 1rj9_A FTSY, signal recognitio 97.7 0.00044 1.5E-08 63.7 12.9 73 50-126 185-262 (304)
458 2yhs_A FTSY, cell division pro 97.7 0.00036 1.2E-08 68.0 12.2 142 4-153 295-479 (503)
459 2yhs_A FTSY, cell division pro 97.6 0.00099 3.4E-08 64.9 14.2 120 181-306 292-451 (503)
460 1vma_A Cell division protein F 97.6 5.1E-05 1.7E-09 70.0 4.6 98 49-153 186-290 (306)
461 3ney_A 55 kDa erythrocyte memb 97.6 1.9E-05 6.6E-10 67.7 1.6 55 4-60 21-76 (197)
462 2rcn_A Probable GTPase ENGC; Y 97.5 0.00062 2.1E-08 63.8 11.3 84 262-348 128-213 (358)
463 2ffh_A Protein (FFH); SRP54, s 97.4 0.00048 1.7E-08 66.2 9.3 73 228-307 179-251 (425)
464 1zu4_A FTSY; GTPase, signal re 97.3 0.00039 1.3E-08 64.5 7.2 74 49-126 191-269 (320)
465 4dzz_A Plasmid partitioning pr 97.3 0.00051 1.8E-08 59.1 7.5 64 49-124 75-143 (206)
466 1zu4_A FTSY; GTPase, signal re 97.3 0.0018 6.1E-08 60.0 11.5 73 229-307 191-268 (320)
467 1vma_A Cell division protein F 97.3 0.00028 9.7E-09 64.9 5.8 148 181-343 103-290 (306)
468 2px0_A Flagellar biosynthesis 97.2 0.0014 4.9E-08 60.0 9.5 117 181-307 104-253 (296)
469 4dzz_A Plasmid partitioning pr 97.2 0.0019 6.6E-08 55.4 9.9 64 229-306 75-143 (206)
470 2ffh_A Protein (FFH); SRP54, s 97.1 0.00068 2.3E-08 65.2 7.1 73 48-125 179-251 (425)
471 3cf2_A TER ATPase, transitiona 97.1 0.0022 7.4E-08 66.5 10.8 25 181-205 510-534 (806)
472 1ls1_A Signal recognition part 97.1 0.0023 7.8E-08 58.6 9.8 72 229-307 180-251 (295)
473 2og2_A Putative signal recogni 97.1 0.0045 1.5E-07 58.1 11.9 122 181-307 156-317 (359)
474 2og2_A Putative signal recogni 97.1 0.0078 2.7E-07 56.5 13.3 21 4-24 159-179 (359)
475 3ney_A 55 kDa erythrocyte memb 97.0 0.00014 4.7E-09 62.3 1.1 57 181-239 18-75 (197)
476 3b9q_A Chloroplast SRP recepto 97.0 0.0037 1.3E-07 57.3 10.6 120 181-307 99-260 (302)
477 1bif_A 6-phosphofructo-2-kinas 97.0 0.00015 5.1E-09 71.3 0.7 115 181-304 38-160 (469)
478 1bif_A 6-phosphofructo-2-kinas 96.9 8E-05 2.7E-09 73.2 -1.6 118 3-122 40-160 (469)
479 2ph1_A Nucleotide-binding prot 96.9 0.012 4.1E-07 52.7 12.7 66 49-123 128-194 (262)
480 2px0_A Flagellar biosynthesis 96.9 0.00075 2.6E-08 61.9 4.5 115 4-127 107-255 (296)
481 1ex7_A Guanylate kinase; subst 96.8 0.0002 6.8E-09 60.8 -0.1 38 5-42 4-42 (186)
482 3cwq_A Para family chromosome 96.7 0.0048 1.6E-07 53.3 7.9 66 229-307 67-134 (209)
483 3c8u_A Fructokinase; YP_612366 96.7 0.0019 6.5E-08 55.8 5.3 42 151-205 4-45 (208)
484 1ls1_A Signal recognition part 96.7 0.0029 1E-07 57.9 6.8 73 49-126 180-252 (295)
485 2f1r_A Molybdopterin-guanine d 96.6 0.00046 1.6E-08 57.7 0.9 25 1-25 1-25 (171)
486 1np6_A Molybdopterin-guanine d 96.6 0.0011 3.9E-08 55.5 3.2 25 1-25 5-29 (174)
487 1kgd_A CASK, peripheral plasma 96.6 0.0012 4E-08 55.7 3.4 23 3-25 6-28 (180)
488 4ido_A Atlastin-1; GTPase, GTP 96.5 0.029 1E-06 53.9 12.9 104 181-290 66-194 (457)
489 3cwq_A Para family chromosome 96.5 0.0046 1.6E-07 53.5 6.5 66 49-125 67-134 (209)
490 1ye8_A Protein THEP1, hypothet 96.3 0.0017 5.8E-08 54.7 2.9 22 4-25 2-23 (178)
491 1ex7_A Guanylate kinase; subst 96.3 0.00076 2.6E-08 57.2 0.6 49 185-235 4-53 (186)
492 1kag_A SKI, shikimate kinase I 96.3 0.0018 6.1E-08 54.0 2.8 25 1-25 3-27 (173)
493 1ly1_A Polynucleotide kinase; 96.3 0.0023 7.8E-08 53.6 3.4 24 1-24 1-24 (181)
494 4ido_A Atlastin-1; GTPase, GTP 96.3 0.033 1.1E-06 53.5 11.8 98 4-108 69-194 (457)
495 3end_A Light-independent proto 96.3 0.0066 2.3E-07 55.8 6.8 65 49-123 156-225 (307)
496 1lvg_A Guanylate kinase, GMP k 96.3 0.0017 5.8E-08 55.7 2.6 23 3-25 5-27 (198)
497 1ko7_A HPR kinase/phosphatase; 96.3 0.0027 9.2E-08 58.2 4.0 89 111-206 80-168 (314)
498 1ye8_A Protein THEP1, hypothet 96.3 0.0018 6E-08 54.6 2.5 23 184-206 2-24 (178)
499 1jjv_A Dephospho-COA kinase; P 96.2 0.0027 9.1E-08 54.7 3.5 24 1-24 1-24 (206)
500 3kjh_A CO dehydrogenase/acetyl 96.2 0.0075 2.6E-07 53.3 6.5 63 229-304 131-194 (254)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=2e-75 Score=575.01 Aligned_cols=410 Identities=35% Similarity=0.640 Sum_probs=337.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 1 ~~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
++++|+|+|++|||||||+|+|++...+.+.+.+++|+|..+..+.+++..+.+|||||++... +.+.+.+..++..++
T Consensus 2 ~~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 2 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD-EPFLAQIRQQAEIAM 80 (436)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc-hhHHHHHHHHHHHHH
Confidence 1589999999999999999999998777788999999999999999999999999999997443 236667888889999
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-hhHHhcCCCCeEEEeeccCCCHHHHHHHHH
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENIL 159 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~ 159 (419)
.+||+++||+|++++.+..+.++.+++++.++|+++|+||+|+...... .+++.+++.+++++||++|.|+++|++.+.
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~ 160 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVA 160 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHH
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHH
Confidence 9999999999999999999999999999899999999999999865443 566777887899999999999999999999
Q ss_pred HhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCC
Q psy17089 160 TIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239 (419)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG 239 (419)
+.+++.+. ....+..++|+++|++|||||||+|+|++.+...+++++|+|.+.....+.+++..+.+|||||
T Consensus 161 ~~l~~~~~--------~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G 232 (436)
T 2hjg_A 161 EHFKNIPE--------TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAG 232 (436)
T ss_dssp HTGGGCCS--------SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHH
T ss_pred HhcCcccc--------ccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCC
Confidence 88864321 0112466899999999999999999999998777899999999999889999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhh--HHHHHHH
Q psy17089 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ--RKIIKNN 317 (419)
Q Consensus 240 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~--~~~~~~~ 317 (419)
+.+.....+.+|+|+..++..+++.||++++|+|++++.++++.+++..+.+.++|+++|+||||+.+... ..+..+.
T Consensus 233 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~ 312 (436)
T 2hjg_A 233 MRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEEN 312 (436)
T ss_dssp HTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHH
T ss_pred cCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHH
Confidence 98776555566888877788899999999999999999999999999999889999999999999986433 3445666
Q ss_pred HHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCCCCCCCceeEEEEecCCCCC
Q psy17089 318 IKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNP 397 (419)
Q Consensus 318 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 397 (419)
+.+.+....+++++++||++|.|++++|+.+.+.+..+..+++++.+++++++++..+++|...+++++++|++|...+|
T Consensus 313 ~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~~i~y~~q~~~~p 392 (436)
T 2hjg_A 313 IRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKP 392 (436)
T ss_dssp HHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTT
T ss_pred HHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCcceeEEeEecCCCCC
Confidence 77777777778999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred CEEEEEecCCCCCChhhhcccC
Q psy17089 398 PIIVIHGNRLKYIGNDYKRYLE 419 (419)
Q Consensus 398 p~~~~~~~~~~~~~~~y~~~~~ 419 (419)
|+|++|+|+|+.++++|+|||+
T Consensus 393 p~~~~~~n~~~~~~~~y~r~l~ 414 (436)
T 2hjg_A 393 PSFVVFVNDPELMHFSYERFLE 414 (436)
T ss_dssp TEEEEEESCGGGCCHHHHHHHH
T ss_pred CEEEEEeCCcccCCHHHHHHHH
Confidence 9999999999999999999985
No 2
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=2e-72 Score=556.78 Aligned_cols=409 Identities=35% Similarity=0.642 Sum_probs=341.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
.|+|+|+|++|||||||+|+|++...+.+.+.+++|++.....+.+.+..+.+|||||+.... +.+.+++..++..++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD-EPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcc-hHHHHHHHHHHHhhHh
Confidence 589999999999999999999998766788899999999999999999999999999987332 4556788888999999
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-hhHHhcCCCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
++|+++||+|+..+++..+.++.+++++.++|+++|+||+|+...... .+++.++++.++++||++|.|++++++.+.+
T Consensus 102 ~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp HCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred hCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHh
Confidence 999999999999999999999999999999999999999999865544 6677888888999999999999999999998
Q ss_pred hcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCC
Q psy17089 161 IELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240 (419)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 240 (419)
.++.... .......++|+++|.+|+|||||+|+|++.+...+++++|+|.+.....+..++..+.+|||||+
T Consensus 182 ~l~~~~~--------~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~ 253 (456)
T 4dcu_A 182 HFKNIPE--------TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 253 (456)
T ss_dssp TGGGSCS--------SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGT
T ss_pred hcccccc--------cccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCC
Confidence 7654321 11124678999999999999999999999887889999999999998899999999999999998
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCCh--hhHHHHHHHH
Q psy17089 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH--NQRKIIKNNI 318 (419)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~--~~~~~~~~~~ 318 (419)
.+.....+..|+|...+++.+++.||++++|+|++++.+.++.+++..+.+.++|+++|+||||+.+. ...++..+.+
T Consensus 254 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~ 333 (456)
T 4dcu_A 254 RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENI 333 (456)
T ss_dssp TTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHH
T ss_pred CcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHH
Confidence 77655545568888888888999999999999999999999999999999999999999999999754 2345566777
Q ss_pred HHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCCCCCCCceeEEEEecCCCCCC
Q psy17089 319 KKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPP 398 (419)
Q Consensus 319 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~~p 398 (419)
.+.+....+++++++||++|.|++++|+.+.+.+..+..+++++.+++++++++..+++|...+++++++|++|...+||
T Consensus 334 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~ki~y~~q~~~~pp 413 (456)
T 4dcu_A 334 RDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPP 413 (456)
T ss_dssp HHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTT
T ss_pred HHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCCCCCceeeEEEEecCCCCCC
Confidence 77777777889999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred EEEEEecCCCCCChhhhcccC
Q psy17089 399 IIVIHGNRLKYIGNDYKRYLE 419 (419)
Q Consensus 399 ~~~~~~~~~~~~~~~y~~~~~ 419 (419)
+|++|+|+|+.++++|+|||+
T Consensus 414 ~~~~~~n~~~~~~~~y~r~l~ 434 (456)
T 4dcu_A 414 SFVVFVNDPELMHFSYERFLE 434 (456)
T ss_dssp EEEEEESCGGGSCHHHHHHHH
T ss_pred EEEEEecCcccCCHHHHHHHH
Confidence 999999999999999999985
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=1.8e-71 Score=547.36 Aligned_cols=410 Identities=34% Similarity=0.524 Sum_probs=329.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
+|+|+|+|++|||||||+|+|++.+.+++++.+++|+|.....+.++|..+.+|||||++....+.+.+.+..++..+++
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 47999999999999999999999887788999999999999999999999999999999865434455678888899999
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCC-C-cc-hhHHhcCCCCeEEEeeccCCCHHHHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS-S-IS-LDFYELGIGNPHIISALYGNGIKNFLENI 158 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~-~-~~-~~~~~~~~~~~~~vSa~~~~~v~~l~~~i 158 (419)
+||++++|+|++.+.+..+.++.+++++.++|+++|+||+|+... . .. .+++.+++.+++++||++|.|++++++.+
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i 160 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETI 160 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHH
Confidence 999999999999999999999999999889999999999998643 1 22 45667787789999999999999999999
Q ss_pred HHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCC
Q psy17089 159 LTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238 (419)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtp 238 (419)
.+.+++... ...........++|+++|++|||||||+|+|++.....+++++|+|++.....+.++|..+.+||||
T Consensus 161 ~~~l~~~~~----~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~ 236 (439)
T 1mky_A 161 IKKLEEKGL----DLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 236 (439)
T ss_dssp HHHHHHTTC----CSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCS
T ss_pred HHhcccccc----cchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECC
Confidence 988764321 0000001235689999999999999999999999877899999999999999999999999999999
Q ss_pred CCCCCCcch-HHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhh--HHHHH
Q psy17089 239 GIRRRNKTF-EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ--RKIIK 315 (419)
Q Consensus 239 G~~~~~~~~-~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~--~~~~~ 315 (419)
|+.+..... +..+.|...+...+++.+|++++|+|++.+.+.++..+...+...++|+++|+||||+.+... ..+..
T Consensus 237 G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~ 316 (439)
T 1mky_A 237 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFT 316 (439)
T ss_dssp CC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHH
T ss_pred CCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHH
Confidence 996554332 333445445556788999999999999999999888888888889999999999999976433 34455
Q ss_pred HHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCCCCCCCceeEEEEecCCC
Q psy17089 316 NNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGK 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~ 395 (419)
+.+...+....+.+++++||++|.|+++||+.+.+.+..+..+++++.+|+++.+++..+++| ++.+++|++|...
T Consensus 317 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~~----~~~ki~y~~q~~~ 392 (439)
T 1mky_A 317 KLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLP----RGLKIFFGVQVDI 392 (439)
T ss_dssp HHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCS----TTCCEEEEEEEET
T ss_pred HHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCC----CCcEEEEEEecCC
Confidence 566666776677899999999999999999999999999999999999999999999988877 7899999999999
Q ss_pred CCCEEEEEecCCCCCChhhhcccC
Q psy17089 396 NPPIIVIHGNRLKYIGNDYKRYLE 419 (419)
Q Consensus 396 ~~p~~~~~~~~~~~~~~~y~~~~~ 419 (419)
+||+|++|+|+++.++++|+|||+
T Consensus 393 ~p~~~~~~~n~~~~~~~~y~r~l~ 416 (439)
T 1mky_A 393 KPPTFLFFVNSIEKVKNPQKIFLR 416 (439)
T ss_dssp TTTEEEEEESCSTTCCHHHHHHHH
T ss_pred CCCEEEEEEcCcccCCHHHHHHHH
Confidence 999999999999999999999985
No 4
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.2e-25 Score=210.45 Aligned_cols=177 Identities=32% Similarity=0.412 Sum_probs=146.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe-CeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
.+.-.|+++|.+|||||||+|+|++.....+++.+++|+.......... +.++.+|||||+.+... +..+.+......
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chhHHHHHHHHH
Confidence 3667999999999999999999999987778899999999988888887 89999999999977541 223344444566
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHHH-HHHHHHcCCcEEEEEEcccCC-ChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDINI-ANFIYESGRSLIVCVNKWDSI-IHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~iiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
..+++.+|++++|+|++++.+..+... +..+...+.|+++|+||+|+. +........+.+.+.+. ...+++++||+
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~--~~~~i~~vSA~ 164 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP--ELTEIVPISAL 164 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT--TCCCEEECBTT
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc--CCCeEEEEeCC
Confidence 688999999999999999999988877 778888899999999999998 55554555555555543 34689999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCC
Q psy17089 337 KLNNINSFMESINHVYDSSIIHL 359 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~~~~~~ 359 (419)
+|.|+++|++.+.+.+.+....+
T Consensus 165 ~g~gv~~L~~~l~~~l~~~~~~~ 187 (308)
T 3iev_A 165 KGANLDELVKTILKYLPEGEPLF 187 (308)
T ss_dssp TTBSHHHHHHHHHHHSCBCCCSS
T ss_pred CCCCHHHHHHHHHHhCccCCCCC
Confidence 99999999999999987665444
No 5
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=3.8e-26 Score=195.80 Aligned_cols=161 Identities=24% Similarity=0.333 Sum_probs=125.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+..+|+++|.+|||||||+|+|.+.....+++++++|.+.....+.+++..+.+|||||+.+.. ...+.+.......
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS---DEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS---SHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch---hHHHHHHHHHHHH
Confidence 4579999999999999999999988655677889999998888888888899999999997653 1233333344456
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHc---CCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYES---GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 337 (419)
+++.+|++++|+|++++.++.+..++..+.+. ++|+++|+||+|+.+... .+......+++++||++
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 78999999999999998877776777666653 689999999999843210 01112346899999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy17089 338 LNNINSFMESINHVYDS 354 (419)
Q Consensus 338 g~gv~~l~~~i~~~~~~ 354 (419)
|.|++++|+.+.+.+..
T Consensus 150 g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999887643
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=8.3e-26 Score=210.38 Aligned_cols=167 Identities=23% Similarity=0.343 Sum_probs=135.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+..+|+++|+||||||||+|+|++...+.+++.+++|++.....+..++.++.+|||||+.+.. ..++++....+..
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---SHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh---hHHHHHHHHHHHH
Confidence 4468999999999999999999999877788889999988777777778899999999998754 2344444566678
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHc--CCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYES--GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 338 (419)
+++.+|++++|+|++++.+..+..+++.+.+. +.|+++|+||+|+...... ..+.+.. + ..+.+++++||++|
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~-~--~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHE-L--LPEAEPRMLSALDE 157 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHH-T--STTSEEEECCTTCH
T ss_pred HHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHH-h--cCcCcEEEEeCCCC
Confidence 89999999999999999888887777888776 8999999999999765431 2222222 2 34568999999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q psy17089 339 NNINSFMESINHVYDSS 355 (419)
Q Consensus 339 ~gv~~l~~~i~~~~~~~ 355 (419)
.|++++++.+.+.++..
T Consensus 158 ~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 158 RQVAELKADLLALMPEG 174 (301)
T ss_dssp HHHHHHHHHHHTTCCBC
T ss_pred CCHHHHHHHHHHhcccC
Confidence 99999999999876543
No 7
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=1.1e-27 Score=213.34 Aligned_cols=201 Identities=19% Similarity=0.163 Sum_probs=125.8
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceee-ecCCCCccceeeeEeeEEe-C--eeEEEEeCCCCCCCCcchHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVI-TYDTPGTTRDSIKSLFEYN-N--KKYILIDTAGIRRRNKTFEVIEKFSV 255 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~e~~~~ 255 (419)
...+||+++|.+|||||||+|+|++..... .....+. .......... + ..+.+|||||+.+....+
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------- 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA--VNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK-------- 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTE--EEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC--------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccce--eeEEEEEEeCCCcEEEEEEEecCCchhhchHH--------
Confidence 467999999999999999999999764221 1222222 2222222222 2 468899999986554221
Q ss_pred HHHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEE
Q psy17089 256 IKTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 256 ~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (419)
..+++.+|++++|+|++++.+.++. .++..+.. .+.|+++|+||+|+.+.... ..+.. ..+....+.+++
T Consensus 79 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~-~~~~~~~~~~~~ 152 (218)
T 4djt_A 79 ---DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI--SKKLV-MEVLKGKNYEYF 152 (218)
T ss_dssp ---HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----C--CHHHH-HHHTTTCCCEEE
T ss_pred ---HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHH-HHHHHHcCCcEE
Confidence 2467889999999999998666554 34444443 46899999999999754221 11122 233334457999
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCCCCCCCceeEEEEecCCCCCCE
Q psy17089 332 FISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPI 399 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~~p~ 399 (419)
++||++|.|++++|+.+.+.+........++.++.++.+++...++|...+ +++|++|...+|||
T Consensus 153 ~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~q~~~~pp~ 217 (218)
T 4djt_A 153 EISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEESK---YIDYMEQASKMAPE 217 (218)
T ss_dssp EEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCCCCBCCCCCCCCCC---------------------
T ss_pred EEecCCCCCHHHHHHHHHHHHhcccccccccccCcCCCccccCccCchhhh---hHHHHHHHhccCCC
Confidence 999999999999999999999988888877777777776666666565433 58899999999997
No 8
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=2e-25 Score=188.53 Aligned_cols=160 Identities=34% Similarity=0.606 Sum_probs=126.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
+++|+++|++|||||||+|+|++.........+++|.+.....+..++..+.+|||||+.... .....+......++.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD--KWEKKIQEKVDRALE 78 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSS--SCCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCcc--chHHHHHHHHHHHHH
Confidence 479999999999999999999987655567778899999988999999999999999998532 122345566677889
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-hhHHhcCCCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
.+|++++|+|+.++......++.++++..+.|+++|+||+|+...... .++...+..+++++||++|.|++++++.+.+
T Consensus 79 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWE 158 (161)
T ss_dssp TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHH
Confidence 999999999999888888888889998889999999999999876544 4555666668999999999999999999998
Q ss_pred hcC
Q psy17089 161 IEL 163 (419)
Q Consensus 161 ~~~ 163 (419)
.+|
T Consensus 159 ~l~ 161 (161)
T 2dyk_A 159 RLP 161 (161)
T ss_dssp HCC
T ss_pred hCc
Confidence 764
No 9
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=8.1e-25 Score=191.14 Aligned_cols=170 Identities=21% Similarity=0.259 Sum_probs=125.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCc-eeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
...++|+++|.+|||||||+|+|++.. .....+.+++|........ +.++.+|||||+..........+.+... .
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~ 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRM-I 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHH-H
Confidence 357899999999999999999999875 3445677777776543322 4589999999976654433334555422 2
Q ss_pred HHHHhhc---CEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 259 LKSILEA---NVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 259 ~~~~~~a---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
..+++.+ |++++|+|++++.+..+..+++++.+.+.|+++|+||+|+.+........+.+.+.++.....+++++||
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSS 176 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCT
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEc
Confidence 3455666 9999999999999999988888888899999999999999887666555566666666556689999999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q psy17089 336 IKLNNINSFMESINHVYD 353 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (419)
++|.|++++++.+.+.+.
T Consensus 177 ~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 177 ETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTCTTHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 999999999999988754
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.4e-25 Score=200.45 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=133.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCc-eeeecCCCCccceeeeEeeE-EeCeeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFE-YNNKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~-~~~~~~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|+|||||+|+|++.. ...++..+++|.+....... .++..+.||||||+..........+.|.. .
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ-L 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH-H
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH-H
Confidence 356899999999999999999999986 45778888998887655554 45679999999998665332222344321 1
Q ss_pred HHHHHhh---cCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCC------CCCC
Q psy17089 258 TLKSILE---ANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF------LSFA 328 (419)
Q Consensus 258 ~~~~~~~---ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~------~~~~ 328 (419)
...+++. +|++++|+|++++.+..+..++.++...++|+++|+||+|+.+........+.+.+.+.. ....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKL 185 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCE
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCC
Confidence 2234444 889999999999988888889999988999999999999998766544444444443332 2557
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 329 MFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 329 ~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
+++++||++|.|++++++.|.+.+...
T Consensus 186 ~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 186 TVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred eEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 899999999999999999999887654
No 11
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=2.4e-24 Score=187.87 Aligned_cols=171 Identities=20% Similarity=0.248 Sum_probs=133.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
...++|+++|.+|||||||+|+|++.......+.+++|...... ..+.++.+|||||+..........+.+... ..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY---LVNSKYYFVDLPGYGYAKVSKKERMLWKRL-VE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEE---EETTTEEEEECCCBSSSCCCHHHHHHHHHH-HH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEE---EECCcEEEEECCCCccccCChhhHHHHHHH-HH
Confidence 35689999999999999999999998766667777777764432 235689999999975543332333444322 12
Q ss_pred HHHhh---cCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 260 KSILE---ANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 260 ~~~~~---ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
.+++. +|++++|+|++.+.+..+..+++++...+.|+++|+||+|+.+........+.+.+.+...+..+++++||+
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSV 176 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTT
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecC
Confidence 34444 499999999999888888888899998999999999999998777666666667766666566899999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy17089 337 KLNNINSFMESINHVYDS 354 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~ 354 (419)
+|.|++++|+++.+.+.+
T Consensus 177 ~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 177 TGEGISELLDLISTLLKE 194 (195)
T ss_dssp TCTTHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999999987653
No 12
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=8e-25 Score=203.73 Aligned_cols=163 Identities=27% Similarity=0.422 Sum_probs=137.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+|+|++|||||||+|+|++...+.+++.+++|++........++.++.+|||||+.+.. +.+.+.+......+++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~-~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM-DALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC-SHHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh-hHHHHHHHHHHHHHHhc
Confidence 47999999999999999999998877778888999998888888889999999999998543 34455677788889999
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhc--CCCEEEEEeccCCCCCCc-chhHH-h-cCCCCeEEEeeccCCCHHHHHHH
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKS--GQPIVLVINKSENINSSI-SLDFY-E-LGIGNPHIISALYGNGIKNFLEN 157 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~-~~~~~-~-~~~~~~~~vSa~~~~~v~~l~~~ 157 (419)
+|++++|+|++++.+..+.++.+.++.. +.|+++|+||+|+..... ..+.. . .++.+++++||++|.|++++++.
T Consensus 87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~ 166 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKAD 166 (301)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHH
Confidence 9999999999988888888888888877 899999999999987655 31111 1 34456899999999999999999
Q ss_pred HHHhcCCcc
Q psy17089 158 ILTIELPYK 166 (419)
Q Consensus 158 i~~~~~~~~ 166 (419)
+.+.+++.+
T Consensus 167 l~~~l~~~~ 175 (301)
T 1wf3_A 167 LLALMPEGP 175 (301)
T ss_dssp HHTTCCBCC
T ss_pred HHHhcccCC
Confidence 999887654
No 13
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=1.4e-24 Score=183.31 Aligned_cols=159 Identities=28% Similarity=0.440 Sum_probs=117.1
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
.+|+++|.+|+|||||+|+|.+.........++++.+.....+..++..+.+|||||+....... ..+ ......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---~~~-~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE---KKI-QEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCC---HHH-HHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH---HHH-HHHHHHHH
Confidence 58999999999999999999987655567788889888888888888999999999997643211 111 13334678
Q ss_pred hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHH
Q psy17089 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 342 (419)
+.+|++++|+|++++.+..+..+.+++...+.|+++|+||+|+.+... ...+.. ..+..+++++||++|.|++
T Consensus 78 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL------YLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp TTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG------GCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred HhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH------hHHHHH-hCCCCCeEEEecccCCChH
Confidence 899999999999998888887888888888999999999999965421 111222 2233379999999999999
Q ss_pred HHHHHHHHHH
Q psy17089 343 SFMESINHVY 352 (419)
Q Consensus 343 ~l~~~i~~~~ 352 (419)
++|+.+.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998754
No 14
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=3.2e-24 Score=210.71 Aligned_cols=165 Identities=30% Similarity=0.458 Sum_probs=119.7
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
.+|+++|+||||||||+|+|++...+.+++++|+|++.....+.+++..+.+|||||+..... +.++......+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ--DIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGG--GCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCcccccc--chHHHHHHHHHHHHH
Confidence 479999999999999999999987777899999999999999999999999999999965321 111122234556789
Q ss_pred hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHH-HHHcCCCCCCcEEEEeccCCCCH
Q psy17089 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNI-KKKLNFLSFAMFNFISAIKLNNI 341 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~SA~~g~gv 341 (419)
+.||++++|+|++++.+..+..+.+++...++|+++|+||+|+.... . ... .+.+ ..+..+++++||++|.|+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~--~---~~~~~~~~-~lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF--E---REVKPELY-SLGFGEPIPVSAEHNINL 153 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH--H---HHTHHHHG-GGSSCSCEECBTTTTBSH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc--H---HHHHHHHH-hcCCCCEEEEeccCCCCH
Confidence 99999999999999999988888888888899999999999984221 1 111 1222 223336899999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy17089 342 NSFMESINHVYDSS 355 (419)
Q Consensus 342 ~~l~~~i~~~~~~~ 355 (419)
++|++.+.+.+.+.
T Consensus 154 ~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 154 DTMLETIIKKLEEK 167 (439)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccc
Confidence 99999999988743
No 15
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=1.8e-23 Score=195.63 Aligned_cols=165 Identities=30% Similarity=0.460 Sum_probs=138.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-CeEEEEEEcCCCCCcc-hhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEV-KKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~ 80 (419)
..|+++|++|||||||+|+|++...+.++..+++|++........+ +.++.+|||||+.+.. ...+.+.+......++
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 3799999999999999999999887778889999999999999998 9999999999997532 1345567778888999
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHH-HHHHHhcCCCEEEEEeccCCC-CCCcc----hhHH-hc-CCCCeEEEeeccCCCHH
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLI-TNFLRKSGQPIVLVINKSENI-NSSIS----LDFY-EL-GIGNPHIISALYGNGIK 152 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~-~~~l~~~~~p~ilv~NK~Dl~-~~~~~----~~~~-~~-~~~~~~~vSa~~~~~v~ 152 (419)
..+|++++|+|+.++.+..+..+ ++.++..+.|+++|+||+|+. ..... .++. .. ...+++++||++|.|++
T Consensus 91 ~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~ 170 (308)
T 3iev_A 91 EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLD 170 (308)
T ss_dssp HHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHH
T ss_pred hcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHH
Confidence 99999999999998888888776 888888899999999999998 44333 1222 23 34589999999999999
Q ss_pred HHHHHHHHhcCCcch
Q psy17089 153 NFLENILTIELPYKK 167 (419)
Q Consensus 153 ~l~~~i~~~~~~~~~ 167 (419)
++++.+.+.+++.+.
T Consensus 171 ~L~~~l~~~l~~~~~ 185 (308)
T 3iev_A 171 ELVKTILKYLPEGEP 185 (308)
T ss_dssp HHHHHHHHHSCBCCC
T ss_pred HHHHHHHHhCccCCC
Confidence 999999999987643
No 16
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.91 E-value=3.8e-24 Score=181.99 Aligned_cols=159 Identities=28% Similarity=0.405 Sum_probs=112.4
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
.++|+++|++|||||||+|+|.+.. ..++.++++|.+.....+.+++..+.+|||||+.+....+ .++. ....+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~---~~~~~ 76 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS--IDEI---IARDY 76 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS--HHHH---HHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc--hhHH---HHHHH
Confidence 4799999999999999999999864 3566788888887777788888899999999997764221 1111 11123
Q ss_pred H--hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 262 I--LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 262 ~--~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
+ ..+|++++|+|+++. .....++..+.+.+.|+++|+||+|+..........+.+.+.+. ++++++||++|.
T Consensus 77 ~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~SA~~~~ 150 (165)
T 2wji_A 77 IINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG----VKVVPLSAAKKM 150 (165)
T ss_dssp HHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----SCEEECBGGGTB
T ss_pred HhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhC----CCEEEEEcCCCC
Confidence 3 379999999999874 33345666677789999999999998532111001122333332 689999999999
Q ss_pred CHHHHHHHHHHHH
Q psy17089 340 NINSFMESINHVY 352 (419)
Q Consensus 340 gv~~l~~~i~~~~ 352 (419)
|++++|+.+.+.+
T Consensus 151 ~v~~l~~~l~~~~ 163 (165)
T 2wji_A 151 GIEELKKAISIAV 163 (165)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 17
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.91 E-value=9.5e-24 Score=189.33 Aligned_cols=173 Identities=20% Similarity=0.202 Sum_probs=118.2
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
...++|+++|.+|||||||+|+|++... .+.+.+++|.+.....+...+..+.+|||||+.+..........+. ...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~--~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT--TIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH--HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH--HHH
Confidence 4678999999999999999999998864 3667888888887777777788999999999965431110001121 112
Q ss_pred HHHhhcCEEEEEecCCCCCCHH---HHHHHHHHHHc--CCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCC-CCCcEEE
Q psy17089 260 KSILEANVVILLLDAQQNISAQ---DINIANFIYES--GRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFL-SFAMFNF 332 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~---~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 332 (419)
.++..+|++++|+|++++.++. ...++..+... +.|+++|+||+|+.+..... .....+....... ..+++++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 3467889999999999876643 34556666654 89999999999997643221 1111222221111 1268999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhc
Q psy17089 333 ISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
+||++|.|++++|+.|.+.+...
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 18
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=1.6e-24 Score=213.22 Aligned_cols=162 Identities=36% Similarity=0.543 Sum_probs=131.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCC-CCCcchHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIR-RRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~e~~~~~~~~ 259 (419)
..++|+++|.||||||||+|+|++.+...+++++++|.+.....+.+++.++.+|||||+. +.. +..|.+....+.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~---~~ve~~gi~~~~ 318 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN---DLVERLGIERTL 318 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC---TTCCCCCHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccch---hhHHHHHHHHHH
Confidence 4589999999999999999999998777889999999999999999999999999999997 543 223433334556
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
.+++.||++|+|+|++++.+.++.++++.+ .++|+++|+||+|+.+....++ +.+.+. ...+++++||++|.
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~~----~~~~~~--~~~~~i~iSAktg~ 390 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEE----IKNKLG--TDRHMVKISALKGE 390 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHH----HHHHHT--CSTTEEEEEGGGTC
T ss_pred HHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHHH----HHHHhc--CCCcEEEEECCCCC
Confidence 789999999999999999888887777665 4899999999999975422222 222222 23689999999999
Q ss_pred CHHHHHHHHHHHHh
Q psy17089 340 NINSFMESINHVYD 353 (419)
Q Consensus 340 gv~~l~~~i~~~~~ 353 (419)
|+++|++.|.+.+.
T Consensus 391 Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 391 GLEKLEESIYRETQ 404 (482)
T ss_dssp CHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998644
No 19
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=1e-24 Score=214.56 Aligned_cols=162 Identities=30% Similarity=0.408 Sum_probs=103.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
..++|+++|.+|||||||+|+|++.+.+.+++++|+|++.....+.+++.++.+|||||+.+.. +.++.+....+..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~---~~ve~~gi~~~~~ 308 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG---EEIEHEGIRRSRM 308 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-----------------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch---hHHHHHHHHHHHh
Confidence 5689999999999999999999998777889999999999999999999999999999997644 3445555566667
Q ss_pred HHhhcCEEEEEecCCCCCCH----HHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEecc
Q psy17089 261 SILEANVVILLLDAQQNISA----QDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~----~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 336 (419)
+++.+|++++|+|++++.+. ....++..+. ++|+++|+||+|+.+...... +.+.+. ...+++++||+
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSAk 380 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISAL 380 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBTT
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEEC
Confidence 88999999999999998877 4444544443 799999999999986654321 223322 12689999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q psy17089 337 KLNNINSFMESINHVYD 353 (419)
Q Consensus 337 ~g~gv~~l~~~i~~~~~ 353 (419)
+|.|+++|++.|.+.+.
T Consensus 381 tg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTBSHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999999887
No 20
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.91 E-value=8.7e-24 Score=181.05 Aligned_cols=160 Identities=26% Similarity=0.288 Sum_probs=120.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+|+|++|||||||+|+|++.....+..++++|++.....+.+++..+.+|||||+.... +............++++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS-DEVERIGIERAWQEIEQ 83 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS-SHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch-hHHHHHHHHHHHHHHHh
Confidence 48999999999999999999987655577888999999889999999999999999997532 11111112233456899
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcchhHHhcCCCCeEEEeeccCCCHHHHHHHHH
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRK---SGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENIL 159 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~ 159 (419)
+|++++|+|+++..+.....+...+.. .++|+++|+||+|+...... +......+++++||++|.|++++++.|.
T Consensus 84 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 161 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG--MSEVNGHALIRLSARTGEGVDVLRNHLK 161 (172)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--EEEETTEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh--hhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 999999999987666555555555544 26899999999998643221 1111223689999999999999999999
Q ss_pred HhcCCc
Q psy17089 160 TIELPY 165 (419)
Q Consensus 160 ~~~~~~ 165 (419)
+.+...
T Consensus 162 ~~~~~~ 167 (172)
T 2gj8_A 162 QSMGFD 167 (172)
T ss_dssp HHC---
T ss_pred HHhhhc
Confidence 876543
No 21
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=2.3e-24 Score=198.40 Aligned_cols=185 Identities=17% Similarity=0.221 Sum_probs=134.8
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcch--HHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF--EVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~e~~~~~~~ 258 (419)
+.++|+++|.+|||||||+|+|++.. ..+++++|+|.+.....+...+..+.+|||||+.+..... ..+++. ..+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~-i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ-IACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHH-HHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHH-HHHH
Confidence 35899999999999999999999986 5788999999999999998888999999999998765221 011221 1222
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCC
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 338 (419)
....+.+|++++|+|+++. .....+..++.+.++|+++|+||+|+.+........+.+.+.+. ++++++||++|
T Consensus 80 ~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg----~~~i~~SA~~g 153 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLG----CPVIPLVSTRG 153 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHT----SCEEECCCGGG
T ss_pred HHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcC----CCEEEEEcCCC
Confidence 2344789999999999984 55667778888889999999999998543221111223333333 69999999999
Q ss_pred CCHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHH
Q psy17089 339 NNINSFMESINHVYDSSII--HLSTSRITRALISAIK 373 (419)
Q Consensus 339 ~gv~~l~~~i~~~~~~~~~--~~~~~~l~~~l~~~~~ 373 (419)
.|+++|++.+.+.+..... ....+.+.+.+..+..
T Consensus 154 ~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~ 190 (274)
T 3i8s_A 154 RGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAK 190 (274)
T ss_dssp HHHHHHHHHHHTCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcccCCCHHHHHHHHHHHH
Confidence 9999999999887664321 1123445444444433
No 22
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.91 E-value=1.9e-23 Score=190.33 Aligned_cols=162 Identities=25% Similarity=0.357 Sum_probs=125.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|.+|||||||+|+|++... .++.++|+|.+.....+...+..+.+|||||+......+ .++.... .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~e~v~~---~ 77 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS--IDEKIAR---D 77 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS--HHHHHHH---H
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC--HHHHHHH---H
Confidence 568999999999999999999999864 578899999999888888888999999999997765432 1111111 2
Q ss_pred HH--hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCC
Q psy17089 261 SI--LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (419)
Q Consensus 261 ~~--~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 338 (419)
++ ..+|++++|+|+++. .....++..+.+.+.|+++|+||+|+............+.+.+. ++++++||++|
T Consensus 78 ~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg----~~vi~~SA~~g 151 (258)
T 3a1s_A 78 YLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLG----IPVVFTSSVTG 151 (258)
T ss_dssp HHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC----SCEEECCTTTC
T ss_pred HHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcC----CCEEEEEeeCC
Confidence 33 579999999999985 45566777888889999999999998543221111223333333 69999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q psy17089 339 NNINSFMESINHVYDS 354 (419)
Q Consensus 339 ~gv~~l~~~i~~~~~~ 354 (419)
.|++++++.+.+.+..
T Consensus 152 ~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 152 EGLEELKEKIVEYAQK 167 (258)
T ss_dssp TTHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhhc
Confidence 9999999999998763
No 23
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.2e-23 Score=180.95 Aligned_cols=161 Identities=18% Similarity=0.103 Sum_probs=113.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|.+|||||||+|+|++.......+..+ .....+.+++..+.+|||||+.+.... ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~ 79 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSS-----------WNT 79 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC----SSCEEEEETTEEEEEEECCC----CGG-----------GHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc----cceEEEEECCEEEEEEECCCCHhHHHH-----------HHH
Confidence 56899999999999999999999765443333323 233456667889999999999554321 125
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+....++..+.+........+.+++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 77899999999999998776664 34444443 57999999999999764333334333332211223468999999
Q ss_pred cCCCCHHHHHHHHHHHHhhcC
Q psy17089 336 IKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~~ 356 (419)
++|.|+++++++|.+.+....
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC--
T ss_pred CCCcCHHHHHHHHHHHHHHHh
Confidence 999999999999999876554
No 24
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.91 E-value=1.4e-24 Score=192.26 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=108.8
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+.+||+++|.+|||||||+++|+... +.....|++..+........++. .+.||||||+.++.. . .
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~----------l-~ 79 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS----------L-I 79 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSSCEEEEEEECCSCTTTCGG----------G-H
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh----------H-H
Confidence 55899999999999999999999654 23333445555666666666654 566899999965542 2 2
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
..+++.++++++|+|+++..++... .|+..+.. .+.|+++|+||+|+.+.... .+....+.+.+ +++++++
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~----~~~~~e~ 155 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKEL----NVMFIET 155 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEEEE
T ss_pred HHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHh----CCeeEEE
Confidence 3688999999999999998777765 35555543 57899999999999643221 11112222332 3689999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc
Q psy17089 334 SAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
||++|.||+++|+.|++.+...
T Consensus 156 SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC---
T ss_pred eCCCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999887543
No 25
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.91 E-value=2.4e-24 Score=196.07 Aligned_cols=159 Identities=23% Similarity=0.300 Sum_probs=124.0
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchH--HHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFE--VIEKFSVIKTLK 260 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~e~~~~~~~~~ 260 (419)
.+|+++|.+|||||||+|+|++.. ..++++||+|.+.....+.+++..+.+|||||+........ ..++.. ...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i---~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQI---AAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHH---HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHH---HHH
Confidence 489999999999999999999985 57889999999999999999999999999999977753100 112211 113
Q ss_pred HH--hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCC
Q psy17089 261 SI--LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (419)
Q Consensus 261 ~~--~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 338 (419)
++ +.+|++++|+|+++. ..+..+..++.+.+.|+++|+||+|+..........+.+.+.+ +++++++||++|
T Consensus 78 ~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l----g~~vi~~SA~~g 151 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL----GCSVIPIQAHKN 151 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH----CSCEEECBGGGT
T ss_pred HHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc----CCCEEEEECCCC
Confidence 34 789999999999984 5566777888888999999999999864332211222344444 379999999999
Q ss_pred CCHHHHHHHHHHH
Q psy17089 339 NNINSFMESINHV 351 (419)
Q Consensus 339 ~gv~~l~~~i~~~ 351 (419)
.|++++++.+.+.
T Consensus 152 ~gi~el~~~i~~~ 164 (256)
T 3iby_A 152 IGIPALQQSLLHC 164 (256)
T ss_dssp BSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999887
No 26
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.91 E-value=1.6e-23 Score=180.97 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=113.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
..++|+++|.+|||||||+++|.+.......+..|. ....+.+++..+.+|||||+.. +. .....
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~i~Dt~G~~~----------~~-~~~~~ 79 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGF----NIKSVQSQGFKLNVWDIGGQRK----------IR-PYWRS 79 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTE----EEEEEEETTEEEEEEECSSCGG----------GH-HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCe----EEEEEEECCEEEEEEECCCCHH----------HH-HHHHH
Confidence 568999999999999999999998764444444442 2345566788999999999933 32 22336
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.....+..+.+..........+++++||
T Consensus 80 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 159 (181)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccC
Confidence 78999999999999988666654 33443322 57999999999999765443333333222112223468999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q psy17089 336 IKLNNINSFMESINHVYDS 354 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (419)
++|.|++++|+++.+.+..
T Consensus 160 ~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 160 LTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp TTCTTHHHHHHHHHHTC--
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999886643
No 27
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.91 E-value=9.9e-24 Score=184.77 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=117.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
....+|+++|.+|||||||+++|++.....+...+ |.......+...+..+.+|||||+.+.... ..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~ 81 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRGL-----------WE 81 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGGG-----------GG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHHH-----------HH
Confidence 47789999999999999999999987643322222 222344455677889999999999544321 12
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHHc-----------CCcEEEEEEcccCCChhhHHHHHHHHHHH-cCCCC
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYES-----------GRSLIVCVNKWDSIIHNQRKIIKNNIKKK-LNFLS 326 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~~-----------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~ 326 (419)
.+++.+|++|+|+|++++.++... .++..+... +.|+++|+||+|+.......++.+.+... +....
T Consensus 82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDH 161 (199)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTS
T ss_pred HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCC
Confidence 567899999999999998776665 455555443 89999999999998764444343333221 11224
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 327 FAMFNFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
.++++++||++|.|++++|+.|.+.+....
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 162 PFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred eeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 568999999999999999999999877654
No 28
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=2.4e-24 Score=185.12 Aligned_cols=165 Identities=21% Similarity=0.238 Sum_probs=126.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+.++|+++|.+|||||||+++|++.. ......++++.+.....+.+++..+.+|||||+.+....+ .
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----------~ 73 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR-----------A 73 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC-----------C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH-----------H
Confidence 467899999999999999999999875 3445567777777777778888999999999997665322 1
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHH--cCCCC--CCcEEEEec
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK--LNFLS--FAMFNFISA 335 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~SA 335 (419)
.++..+|++++|+|++++...+....+..+...+.|+++|+||+|+..... ......+... +.... .++++++||
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 456789999999999998888888888877778999999999999976421 2222222111 11111 258999999
Q ss_pred cCCCCHHHHHHHHHHHHhhcCC
Q psy17089 336 IKLNNINSFMESINHVYDSSII 357 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~~~ 357 (419)
++|.|++++|+.|.+.+.....
T Consensus 153 ~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHhhhhhcc
Confidence 9999999999999998876543
No 29
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.90 E-value=1.7e-23 Score=177.26 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=111.1
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
+||+++|.+|||||||+|+|++... ....| |.......+..++..+.+|||||+.+ +. .....++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~-~~~~~~~ 65 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IR-PLWRHYF 65 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS--SCCCC--CSSCCEEEEECSSCEEEEEECCCCGG----------GH-HHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCc--CcccC--cCceeEEEEEECCEEEEEEEcCCChh----------hH-HHHHHHh
Confidence 5899999999999999999987542 22233 33334455666778999999999933 32 2223578
Q ss_pred hhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccC
Q psy17089 263 LEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 337 (419)
+.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.....++.+.+..........+++++||++
T Consensus 66 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 145 (164)
T 1r8s_A 66 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATS 145 (164)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCC
Confidence 999999999999988666554 34444433 3799999999999976543333433333222222346799999999
Q ss_pred CCCHHHHHHHHHHHHh
Q psy17089 338 LNNINSFMESINHVYD 353 (419)
Q Consensus 338 g~gv~~l~~~i~~~~~ 353 (419)
|.|++++|+.+.+.+.
T Consensus 146 ~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 146 GDGLYEGLDWLSNQLR 161 (164)
T ss_dssp TBTHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999988764
No 30
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.1e-23 Score=179.53 Aligned_cols=164 Identities=21% Similarity=0.151 Sum_probs=113.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+|+|++.........++++.+.....+..++. .+.+|||||+.+.. ..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~ 76 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-----------SV 76 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-----------HH
Confidence 467999999999999999999999876433344556666665555566664 78889999984332 22
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
...+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.... .+....+.+.. ++++++
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 152 (180)
T 2g6b_A 77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY----GLPFME 152 (180)
T ss_dssp --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH----TCCEEE
T ss_pred HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc----CCeEEE
Confidence 33578899999999999987555543 34455544 57999999999999753211 11112222222 358999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcCCC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSIIH 358 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~~~ 358 (419)
+||++|.|++++|+++.+.+.+...+
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~~~~~~~ 178 (180)
T 2g6b_A 153 TSAKTGLNVDLAFTAIAKELKRRSMK 178 (180)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC----
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988765433
No 31
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.90 E-value=2.8e-23 Score=179.94 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=115.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|.+|||||||+|+|++.. .....+ |.......+.+++..+.+|||||+ +++. .....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~----------~~~~-~~~~~ 81 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISP--TLGFNIKTLEHRGFKLNIWDVGGQ----------KSLR-SYWRN 81 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC--CSSEEEEEEEETTEEEEEEEECCS----------HHHH-TTGGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccc--cCccceEEEEECCEEEEEEECCCC----------HhHH-HHHHH
Confidence 56899999999999999999999875 222222 233444556677889999999999 3332 12235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.....+..+.+..........+++++||
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1ksh_A 82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA 161 (186)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeC
Confidence 77899999999999998766654 34444433 47999999999999765443333333322112233468999999
Q ss_pred cCCCCHHHHHHHHHHHHhhc
Q psy17089 336 IKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~ 355 (419)
++|.|++++++.+.+.+.+.
T Consensus 162 ~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 162 VTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999887654
No 32
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.90 E-value=3.1e-23 Score=176.86 Aligned_cols=160 Identities=19% Similarity=0.098 Sum_probs=116.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+.++|+++|.+|||||||+|+|.+.... ...+ |.......+.+++..+.+|||||+.+... ...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-----------~~~ 69 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSIRP-----------YWR 69 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEEETTEEEEEEEECCCGGGGG-----------GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--CcCC--cCccceEEEEECCEEEEEEECCCChhhhH-----------HHH
Confidence 35689999999999999999999876532 2222 33344456677788999999999954431 112
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.....++.+.+..........+++++|
T Consensus 70 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (171)
T 1upt_A 70 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS 149 (171)
T ss_dssp GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECc
Confidence 567889999999999998776654 34444432 5899999999999976544444444443332333446899999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q psy17089 335 AIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (419)
|++|.|++++|+.+.+.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 150 ATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999987754
No 33
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.90 E-value=2.9e-23 Score=180.38 Aligned_cols=161 Identities=17% Similarity=0.112 Sum_probs=113.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+.++|+++|.+|||||||+|+|++.... ....+ |.......+...+..+.+|||||+ +++.. ...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~-~~~ 85 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIP--TVGFNMRKITKGNVTIKLWDIGGQ----------PRFRS-MWE 85 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCC--CCSEEEEEEEETTEEEEEEEECCS----------HHHHT-THH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC-CccCC--CCceeEEEEEeCCEEEEEEECCCC----------HhHHH-HHH
Confidence 46799999999999999999999976432 11222 222223345667889999999998 33332 233
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.......++.+.+..........+++++|
T Consensus 86 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSIS 165 (188)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEE
Confidence 578999999999999987666654 34444432 5799999999999976533333333333222223456899999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q psy17089 335 AIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (419)
|++|.|++++|++|.+.+..
T Consensus 166 A~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 166 CKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTTCTTHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 34
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=7e-25 Score=212.16 Aligned_cols=216 Identities=22% Similarity=0.257 Sum_probs=151.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe-eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
...++|+++|.+|+|||||+|+|++.....+++.+|+|.+.....+.+.+. .+.+|||||+.++.... ......+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~----~~~~~~~ 107 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG----RLRVEKA 107 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTC----CCCHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchh----HHHHHHH
Confidence 356899999999999999999999987667788999999999888888776 89999999998765322 1112345
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCC
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 338 (419)
..+++.+|++++|+|+ +....+..++..+.+.++|+++|+||+|+...... +..+.+....+++++++||++|
T Consensus 108 ~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-----~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 108 RRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-----ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-----HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-----HHHHHHHHHcCCCEEEEECCCC
Confidence 5788999999999999 55678888999999999999999999999765442 2223344444579999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCC--------------------------CHHHHHHHHHHHHHcCCCCCCCCCceeEEEEec
Q psy17089 339 NNINSFMESINHVYDSSIIHL--------------------------STSRITRALISAIKNHPPCRKKLIRPKLRYAHQ 392 (419)
Q Consensus 339 ~gv~~l~~~i~~~~~~~~~~~--------------------------~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q 392 (419)
.|++++|+.|.+.+....... ..-....++++.++........ +..++..++.
T Consensus 181 ~gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkgr~ilp~~~~ird~l~~~~~~~~~-~~~~l~~~l~ 259 (423)
T 3qq5_A 181 KGFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAIREALDREAIALVV-KERELRYVME 259 (423)
T ss_dssp TSTTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTTCCCHHHHHHHHHHHHTTCEEEEC-CSTTHHHHHH
T ss_pred CCHHHHHHHHHHhhhhhccCcchhhccccCceEEEEeeccccCcCCccccchHHHHHHHHHhhhHHHHh-hHHHHHHHHH
Confidence 999999999999984331111 1122456788887766533222 2223445556
Q ss_pred CCCCCCEEEEEecCC
Q psy17089 393 GGKNPPIIVIHGNRL 407 (419)
Q Consensus 393 ~~~~~p~~~~~~~~~ 407 (419)
....+|.+++.+++.
T Consensus 260 ~l~~~~~lv~tdsq~ 274 (423)
T 3qq5_A 260 NIGMKPKLVITDSQV 274 (423)
T ss_dssp HCSSCCSCCCBCTTH
T ss_pred hcCCCccEEEeccHH
Confidence 667889999988874
No 35
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.90 E-value=4.2e-23 Score=180.04 Aligned_cols=159 Identities=15% Similarity=0.130 Sum_probs=111.8
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+.++|+++|.+|||||||+++|.+..... ..| |.......+..++..+.+|||||+.+... ...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~ 91 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNICFTVWDVGGQDKIRP-----------LWR 91 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC-----CT-----------THH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc--cCC--cCceeEEEEEECCEEEEEEECCCCHhHHH-----------HHH
Confidence 467999999999999999999998765332 222 33344455667788999999999954431 122
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.....++.+.+..........+++++|
T Consensus 92 ~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 171 (192)
T 2b6h_A 92 HYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATC 171 (192)
T ss_dssp HHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECc
Confidence 577899999999999988666654 34444433 3799999999999976543333433333222223346899999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q psy17089 335 AIKLNNINSFMESINHVYD 353 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (419)
|++|.|++++|+.+.+.+.
T Consensus 172 A~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 172 ATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTTTBTHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHHh
Confidence 9999999999999988754
No 36
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.90 E-value=7.6e-24 Score=179.86 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=97.3
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+||+++|.+|||||||+|+|.+.......+.++++.. .....++ ..+.+|||||+.... ....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~~ 67 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGR-----------WLPG 67 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccch-----------hhhh
Confidence 47999999999999999999998765555566666553 3334444 467789999984432 1222
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
.+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.... ......+... .+++++++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~ 143 (166)
T 3q72_A 68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV----FDCKFIET 143 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHH----TTCEEEEC
T ss_pred hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHH----hCCcEEEe
Confidence 577899999999999987655554 34455544 47999999999999754321 1111222222 23699999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc
Q psy17089 334 SAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
||++|.|++++|+.+.+.+...
T Consensus 144 Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 144 SAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp BGGGTBSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999887653
No 37
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.90 E-value=2.1e-25 Score=213.53 Aligned_cols=241 Identities=24% Similarity=0.257 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhH-----HhcCC--CC
Q psy17089 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDF-----YELGI--GN 139 (419)
Q Consensus 71 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~-----~~~~~--~~ 139 (419)
.|..........++++++|+|+++........+.+++. ++|+++|+||+|+...... .++ ...|. ..
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~ 137 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVD 137 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSE
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCccc
Confidence 56666666778999999999998755444344444443 7899999999999876431 222 23454 36
Q ss_pred eEEEeeccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCC-----ceeeecCCC
Q psy17089 140 PHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGE-----NRVITYDTP 214 (419)
Q Consensus 140 ~~~vSa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~-----~~~~~~~~~ 214 (419)
++.+||++|.|++++++.+.+... ..+|+++|.+|+|||||+|+|++. ....+++.+
T Consensus 138 v~~iSA~~g~gi~~L~~~I~~~~~------------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~ 199 (369)
T 3ec1_A 138 VCLVSAAKGIGMAKVMEAINRYRE------------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP 199 (369)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHT------------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc------------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC
Confidence 899999999999999999986532 247999999999999999999986 456788999
Q ss_pred CccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH---hhcCEEEEEecCCCCCCHHHHHHHHHHHH
Q psy17089 215 GTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI---LEANVVILLLDAQQNISAQDINIANFIYE 291 (419)
Q Consensus 215 ~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~---~~ad~~i~v~d~~~~~~~~~~~~~~~~~~ 291 (419)
|+|.+.....+ +..+.++||||+.......+.+. ...+.++ +..+.++++++..+.....++..++.+..
T Consensus 200 gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~----~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~ 272 (369)
T 3ec1_A 200 GTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVD----ARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKG 272 (369)
T ss_dssp TSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSC----TTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES
T ss_pred CeEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHh----HHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccC
Confidence 99998655432 34589999999976653322221 1122344 67899999999954321122222444445
Q ss_pred cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHH
Q psy17089 292 SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (419)
Q Consensus 292 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 342 (419)
.+.|+++++||+|.......+...+.+++.+. ..+.+.++....++.
T Consensus 273 ~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g----~~l~p~~~~~~~~~~ 319 (369)
T 3ec1_A 273 GRRSFVCYMANELTVHRTKLEKADSLYANQLG----ELLSPPSKRYAAEFP 319 (369)
T ss_dssp SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT----TTBCSSCGGGTTTCC
T ss_pred CCceEEEEecCCcccccccHHHHHHHHHHhcC----CccCCCCchhhhhcc
Confidence 67899999999999866555555556666665 345556666655543
No 38
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=7.6e-24 Score=207.61 Aligned_cols=164 Identities=30% Similarity=0.404 Sum_probs=122.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
..++|+++|.+|||||||+|+|++.+...+++.+|+|.+.....+.+++.++.+|||||+.+.. +.++.+...++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~---~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS---DQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch---hHHHHHHHHHHhh
Confidence 5689999999999999999999998777788999999999888889999999999999996643 3445555556667
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 340 (419)
+++.+|++++|+|++++.+..+..+++.+. ..|+++|+||+|+.+..... .........+++++||++|.|
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~-------~~~~~~~~~~~i~iSAktg~G 370 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT-------SLEYPENITQIVHTAAAQKQG 370 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST-------TCCCCTTCCCEEEEBTTTTBS
T ss_pred hhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH-------HHHHhccCCcEEEEECCCCCC
Confidence 888999999999999998888877777765 37999999999997654321 011111356899999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q psy17089 341 INSFMESINHVYDSSI 356 (419)
Q Consensus 341 v~~l~~~i~~~~~~~~ 356 (419)
+++|++.|.+.+....
T Consensus 371 i~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 371 IDSLETAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999876543
No 39
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=180.64 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=105.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|||||||+|+|.+.......+.+|++. ....+.+++. .+.+|||||+.... +. ...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~-~~~ 71 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLTVDGEDTTLVVVDTWEAEKLD--------KS-WSQ 71 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEEETTEEEEEEEECCC---------------C-HHH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEEECCEEEEEEEEecCCCCccc--------hh-hhH
Confidence 56899999999999999999999886544444445443 3344555554 67889999995421 11 112
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.... .+....+.... ++++++
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 147 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF----DCKFIE 147 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH----TSEEEE
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHc----CCeEEE
Confidence 2567889999999999987665554 34555554 37999999999999754221 11111222222 368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhc
Q psy17089 333 ISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
+||++|.|++++|++|.+.+...
T Consensus 148 ~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 148 TSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999877543
No 40
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.90 E-value=2e-23 Score=180.29 Aligned_cols=156 Identities=18% Similarity=0.109 Sum_probs=113.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+.++|+++|.+|||||||+|+|++.......+..+.+. ..+.+++..+.+|||||+.+.... ..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~ 83 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRSS-----------WN 83 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC----EEEEETTEEEEEEEESSSGGGTCG-----------GG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee----EEEEECCEEEEEEECCCCHhHHHH-----------HH
Confidence 467999999999999999999999876544444444332 445667889999999999554321 12
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......++.+.+.........++++++|
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 567899999999999998777664 34444443 6799999999999976433333333332222222345899999
Q ss_pred ccCCCCHHHHHHHHHH
Q psy17089 335 AIKLNNINSFMESINH 350 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~ 350 (419)
|++|.|++++|++|.+
T Consensus 164 a~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMS 179 (181)
T ss_dssp TTTTBTHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHh
Confidence 9999999999998875
No 41
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.90 E-value=3.5e-23 Score=188.30 Aligned_cols=155 Identities=29% Similarity=0.393 Sum_probs=122.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchh----hHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK----GIMHEMTKQTK 77 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~----~~~~~~~~~~~ 77 (419)
+|+|+++|++|||||||+|+|+|.. ..++..+++|.+...+.+.+++..+.+|||||+...... ...+.+...+.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4799999999999999999999874 568889999999999999999999999999999765421 22222222221
Q ss_pred HHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHH
Q psy17089 78 QAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIK 152 (419)
Q Consensus 78 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~ 152 (419)
. ..++|++++|+|+++ ......+..++...+.|+++|+||+|+...... ..+. .++. +++++||++|.|++
T Consensus 80 ~-~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~-~vi~~SA~~g~gi~ 155 (256)
T 3iby_A 80 I-DLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGC-SVIPIQAHKNIGIP 155 (256)
T ss_dssp H-HSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCS-CEEECBGGGTBSHH
T ss_pred h-hCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCC-CEEEEECCCCCCHH
Confidence 1 278999999999986 455566777787889999999999998765543 2222 4565 89999999999999
Q ss_pred HHHHHHHHh
Q psy17089 153 NFLENILTI 161 (419)
Q Consensus 153 ~l~~~i~~~ 161 (419)
++++.+.+.
T Consensus 156 el~~~i~~~ 164 (256)
T 3iby_A 156 ALQQSLLHC 164 (256)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999999975
No 42
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.90 E-value=8.8e-23 Score=177.01 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=115.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCee--EEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+.++|+++|.+|||||||+|+|++.. ....+++++.+.....+..++.. +.+|||||+.+.... .
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 69 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-----------R 69 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTT-----------H
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHH-----------H
Confidence 56899999999999999999999765 34556667766666666776665 667999998554421 2
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
..+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.....+....+...+. .+++++
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 145 (189)
T 4dsu_A 70 DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG----IPFIET 145 (189)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT----CCEEEC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC----CeEEEE
Confidence 2567889999999999987655554 34444443 47999999999999754322223333333332 689999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc
Q psy17089 334 SAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
||++|.|++++|+++.+.+...
T Consensus 146 Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 146 SAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987654
No 43
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.90 E-value=2.8e-23 Score=185.45 Aligned_cols=164 Identities=22% Similarity=0.289 Sum_probs=127.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC-CceecCCCCCCccceEEEEE-ECCeEEEEEEcCCCCCcc-hhhHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGY-IGKKSFIIIDTGGFEPEV-KKGIMHEMTKQTKQ 78 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~ 78 (419)
.++|+|+|.+|||||||+|+|++.. .+.+...+++|.+....... ..+..+.+|||||+.+.. .....+.+......
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 3689999999999999999999876 35677888899887766655 457899999999986432 11223344444555
Q ss_pred HHHh---CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-------hhHH-hc------CCCCeE
Q psy17089 79 AIIE---SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFY-EL------GIGNPH 141 (419)
Q Consensus 79 ~~~~---~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-------~~~~-~~------~~~~~~ 141 (419)
++.. +|++++|+|+.+++...+..+.++++..++|+++|+||+|+...... .+.+ .. ...+++
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 188 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQ 188 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEE
Confidence 5555 78899999999988888899999999889999999999999876543 1111 21 334789
Q ss_pred EEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 142 IISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 142 ~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
++||++|.|++++++.|.+.++..
T Consensus 189 ~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 189 LFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHC--
T ss_pred EeecCCCcCHHHHHHHHHHhcCcc
Confidence 999999999999999999988765
No 44
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.90 E-value=2.6e-23 Score=180.06 Aligned_cols=158 Identities=17% Similarity=0.140 Sum_probs=111.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
.+.+||+++|.+|||||||+++|++.... ..+..+ .......+.+++. .+.+|||||+. .+.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~--- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV--QEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPP----------ELQ--- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC--CCCCTT-CEEEEEEEEETTEEEEEEEEECSSSC----------CHH---
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCC-cceEEEEEEECCEEEEEEEEECCCCh----------hhh---
Confidence 47799999999999999999999976432 222223 3344456667665 55669999993 332
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHH-HHHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQD-INIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
+++.+|++++|+|++++.++++ ..|+..+.. .+.|+++|+||+|+..........++..+.....+.+++++
T Consensus 82 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e 158 (184)
T 3ihw_A 82 ---FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYE 158 (184)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEE
T ss_pred ---eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEE
Confidence 6788999999999999877766 346666654 46899999999998422111001111122222233478999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+||++|.|++++|+++.+.+....
T Consensus 159 ~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999998876543
No 45
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.90 E-value=8.1e-24 Score=193.95 Aligned_cols=160 Identities=23% Similarity=0.312 Sum_probs=120.4
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
.++|+++|.+|||||||+|+|++.. ..++++||+|.+.....+.. +..+.+|||||+....... .++. ....+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~--~~e~---v~~~~ 75 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS--PEAK---VARDY 75 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS--HHHH---HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC--hHHH---HHHHH
Confidence 4799999999999999999999875 46789999999887777766 7899999999997764322 1111 11234
Q ss_pred Hh--hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 262 IL--EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 262 ~~--~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
+. .+|++++|+|+++. .....+...+.+.+.|+++|+||+|+............+.+.+ +++++++||++|.
T Consensus 76 ~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l----g~~vi~~SA~~g~ 149 (272)
T 3b1v_A 76 LLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL----GVPVVATSALKQT 149 (272)
T ss_dssp HHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH----TSCEEECBTTTTB
T ss_pred HhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc----CCCEEEEEccCCC
Confidence 44 69999999999975 4455677777788999999999999853321111112333333 3689999999999
Q ss_pred CHHHHHHHHHHHHhh
Q psy17089 340 NINSFMESINHVYDS 354 (419)
Q Consensus 340 gv~~l~~~i~~~~~~ 354 (419)
|++++|+.+.+.+..
T Consensus 150 gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 150 GVDQVVKKAAHTTTS 164 (272)
T ss_dssp SHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987643
No 46
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.90 E-value=1.1e-22 Score=172.81 Aligned_cols=153 Identities=28% Similarity=0.376 Sum_probs=110.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH--
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI-- 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-- 80 (419)
++|+++|++|||||||+|+|++.. ...+..+++|++.....+.+++..+.+|||||++........+.+ ...++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---~~~~~~~ 79 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEII---ARDYIIN 79 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHH---HHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHH---HHHHHhc
Confidence 689999999999999999999864 345667888998888888889999999999999854322111122 22233
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHHHHH
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFL 155 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~~l~ 155 (419)
.++|++++|+|+.+. .....+...+.+.++|+++|+||+|+...+.. .++. ..+. +++++||++|.|+++++
T Consensus 80 ~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~SA~~~~~v~~l~ 156 (165)
T 2wji_A 80 EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELK 156 (165)
T ss_dssp HCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTS-CEEECBGGGTBSHHHHH
T ss_pred CCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCC-CEEEEEcCCCCCHHHHH
Confidence 489999999998752 22233445555578999999999998643322 2232 3454 78999999999999999
Q ss_pred HHHHHhc
Q psy17089 156 ENILTIE 162 (419)
Q Consensus 156 ~~i~~~~ 162 (419)
+.+.+.+
T Consensus 157 ~~l~~~~ 163 (165)
T 2wji_A 157 KAISIAV 163 (165)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998765
No 47
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.1e-23 Score=180.46 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=114.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+.++|+++|.+|||||||+|+|++...+... + ..|.......+.+++..+.+|||||+.+.... ..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~~ 85 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-I-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNL-----------WE 85 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-C-CCCSSEEEEEEECSSCEEEEEEECCSTTTGGG-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-c-CCccceeEEEEEECCEEEEEEECCCCHHHHHH-----------HH
Confidence 46799999999999999999999987532222 2 23444555667777889999999998655421 12
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH------cCCcEEEEEEcccCCChhhHHHHHHHHH-HHcCCCCCCcEE
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE------SGRSLIVCVNKWDSIIHNQRKIIKNNIK-KKLNFLSFAMFN 331 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~ 331 (419)
.+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+....++..+.+. ..+. ..+.+++
T Consensus 86 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~ 164 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIK-DKPWHIC 164 (190)
T ss_dssp GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCC-SSCEEEE
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhcc-CCceEEE
Confidence 567899999999999987555543 34444433 4789999999999976544333333332 1111 1246899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 332 FISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
++||++|.|++++|+.|.+.+...
T Consensus 165 ~~Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 165 ASDAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC---
T ss_pred EccCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999999999999876543
No 48
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.90 E-value=3.7e-23 Score=179.75 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=116.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|.+|||||||+|+|.+...... .| |.......+..++..+.+|||||+.+....+ ..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-----------~~ 85 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTT--VP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYW-----------RC 85 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEE--CS--STTCCEEEEEETTEEEEEEEECCSSSSCCCC-----------SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCc--CC--CCceEEEEEEECCEEEEEEECCCCHhHHHHH-----------HH
Confidence 568999999999999999999987654332 22 2223345566678899999999997654321 14
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.....++.+.+..........+++++||
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 165 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSS 165 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccC
Confidence 67789999999999998776654 34444433 47999999999999765443334333332222233458999999
Q ss_pred cCCCCHHHHHHHHHHHHhhc
Q psy17089 336 IKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~ 355 (419)
++|.|++++++.+.+.+.+.
T Consensus 166 ~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 166 KTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp TTCTTHHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHHHhc
Confidence 99999999999999887654
No 49
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=4e-23 Score=178.39 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=111.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|.+|||||||+|+|++.......+..+ .....+.+++..+.+|||||+.+.... ...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~ 81 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPY-----------WRC 81 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT----CCEEEEEETTEEEEEEEEC----CCTT-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc----cceEEEEECCEEEEEEECCCCHhHHHH-----------HHH
Confidence 56899999999999999999999776534433333 233456667889999999999655421 124
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.....++.+.+..........+++++||
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 161 (183)
T 1moz_A 82 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 161 (183)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccC
Confidence 67889999999999988776664 34444432 57999999999999765333333332221111123357999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q psy17089 336 IKLNNINSFMESINHVYDS 354 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (419)
++|.|++++++++.+.+.+
T Consensus 162 ~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 162 IKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp GGTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999999987754
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.89 E-value=1.1e-23 Score=183.93 Aligned_cols=161 Identities=20% Similarity=0.210 Sum_probs=114.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCee--EEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++.. ....+.+++.......+..++.. +.+|||||+.+... .
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 87 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGE--IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR-----------L 87 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSC--CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-----------T
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCC--CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH-----------H
Confidence 467999999999999999999999875 23344455555555555666654 58899999854431 1
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhH---HHHHHHHHHHcCCCCCCcE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQR---KIIKNNIKKKLNFLSFAMF 330 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~ 330 (419)
...+++.+|++++|+|++++.+..+. .|+..+.. .+.|+++|+||+|+.+.... .+....+.+.+. ..++
T Consensus 88 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~ 164 (194)
T 3reg_A 88 RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG---CVAY 164 (194)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT---CSCE
T ss_pred hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC---CCEE
Confidence 22577889999999999998666663 35555554 37999999999999753211 112222222222 2349
Q ss_pred EEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 331 NFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 331 ~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+++||++|.|++++|+.+.+.+....
T Consensus 165 ~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 165 IEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred EEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999876654
No 51
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.89 E-value=1.2e-22 Score=186.86 Aligned_cols=163 Identities=24% Similarity=0.390 Sum_probs=127.2
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
.++|+++|++|||||||+|+|++... .++.++|+|.+.....+.+++..+.+|||||+.+..... .+... ...+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~---~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS--IDELI---ARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC--HHHHH---HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC--HHHHH---HHHh
Confidence 47999999999999999999999864 788999999999999999999999999999997765321 12111 1123
Q ss_pred H--hhcCEEEEEecCCCCCCHHHHHHHHHHHHcC-CcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCC
Q psy17089 262 I--LEANVVILLLDAQQNISAQDINIANFIYESG-RSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (419)
Q Consensus 262 ~--~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 338 (419)
+ ..+|++++|+|+++. .....++..+.+.+ .|+++|+||+|+.+..........+.+.+. ++++++||++|
T Consensus 77 ~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----~~~~~~Sa~~g 150 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG----VPVIPTNAKKG 150 (271)
T ss_dssp HHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----SCEEECBGGGT
T ss_pred hhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcC----CcEEEEEeCCC
Confidence 3 679999999999986 55666777777777 999999999998543221111233444443 78999999999
Q ss_pred CCHHHHHHHHHHHHhhcC
Q psy17089 339 NNINSFMESINHVYDSSI 356 (419)
Q Consensus 339 ~gv~~l~~~i~~~~~~~~ 356 (419)
.|++++++.+.+.+....
T Consensus 151 ~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 151 EGVEELKRMIALMAEGKV 168 (271)
T ss_dssp BTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999999887553
No 52
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=3.8e-23 Score=192.76 Aligned_cols=169 Identities=26% Similarity=0.339 Sum_probs=129.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCC-CCCcchHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIR-RRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~e~~~~~~~~ 259 (419)
+..+|+++|++|||||||+|+|++...+.+++.+++|++.....+..++.++.+|||||+. ... ..+.+.....+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~---~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK---RAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH---HHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch---hhHHHHHHHHHH
Confidence 4468999999999999999999999877788889999887777777778899999999995 211 112222122233
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC-hhhHHHHHHHHHHHcCCCCCCcEEEEeccCC
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII-HNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 338 (419)
.+++.+|++++|+|+++ .+..+..+++.+...+.|+++|+||+|+.. ... ..+.+.+.....+..+++++||++|
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~---~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKAD---LLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHH---HHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHH---HHHHHHHHHHhcCcCceEEEECCCC
Confidence 56788999999999988 888888888888777899999999999976 332 2233333333334457999999999
Q ss_pred CCHHHHHHHHHHHHhhcC
Q psy17089 339 NNINSFMESINHVYDSSI 356 (419)
Q Consensus 339 ~gv~~l~~~i~~~~~~~~ 356 (419)
.|++++++.+.+.++...
T Consensus 160 ~~v~~l~~~i~~~l~~~~ 177 (301)
T 1ega_A 160 LNVDTIAAIVRKHLPEAT 177 (301)
T ss_dssp TTHHHHHHHHHTTCCBCC
T ss_pred CCHHHHHHHHHHhCCcCC
Confidence 999999999998766543
No 53
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.89 E-value=5.7e-23 Score=179.67 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=115.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+++|.+... .....++++.+.....+.+++. .+.+|||||+.... .+ .
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~---~ 89 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG-------GW---L 89 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG-------HH---H
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch-------hh---h
Confidence 4679999999999999999999986532 2345566777777777777665 56779999995432 11 1
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (419)
...+++.+|++++|+|+++..++... .++..+.. .+.|+++|+||+|+.+.... .+....+...+ +++++
T Consensus 90 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~----~~~~~ 165 (195)
T 3cbq_A 90 RDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL----SCKHI 165 (195)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT----TCEEE
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHh----CCEEE
Confidence 22567889999999999987655543 35555543 37999999999999753221 11112222222 36899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 332 FISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
++||++|.|++++|+.+.+.+....
T Consensus 166 e~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 166 ETSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999876543
No 54
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=9.9e-24 Score=207.07 Aligned_cols=162 Identities=31% Similarity=0.452 Sum_probs=113.4
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (419)
++|+++|+||||||||+|+|++...+.+.+.+|+|++.......+.+..+.+|||||+..... .+++.....+..++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~---~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE---PFLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------------CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch---hHHHHHHHHHHHHH
Confidence 689999999999999999999987777889999999999888888899999999999953321 12222234556789
Q ss_pred hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHH
Q psy17089 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (419)
Q Consensus 263 ~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 342 (419)
+.||++++|+|++++.+..+..+.+.+...++|+++|+||+|+..... ...+.+ ..+..+++++||++|.|++
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~------~~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh------hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence 999999999999999999998888888888999999999999864321 111111 1222378999999999999
Q ss_pred HHHHHHHHHHhh
Q psy17089 343 SFMESINHVYDS 354 (419)
Q Consensus 343 ~l~~~i~~~~~~ 354 (419)
+|++.+.+.+.+
T Consensus 154 ~L~~~i~~~l~~ 165 (436)
T 2hjg_A 154 DLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHHHhcCc
Confidence 999999998864
No 55
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.89 E-value=3e-25 Score=212.20 Aligned_cols=237 Identities=22% Similarity=0.244 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHh--cCCCEEEEEeccCCCCCCcc----hhH----H-hcCC--
Q psy17089 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK--SGQPIVLVINKSENINSSIS----LDF----Y-ELGI-- 137 (419)
Q Consensus 71 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~----~~~----~-~~~~-- 137 (419)
+|........+.++++++|+|+++.. ..+...+.+ .++|+++|+||+|+...... .++ + ..|.
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~ 133 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKP 133 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCc
Confidence 56666667777888999999998632 222222332 37899999999999865531 222 2 3454
Q ss_pred CCeEEEeeccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCc------eeeec
Q psy17089 138 GNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN------RVITY 211 (419)
Q Consensus 138 ~~~~~vSa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~------~~~~~ 211 (419)
.+++.+||++|.|++++++.+.+... ..+|+++|.+|+|||||+|+|++.. ...++
T Consensus 134 ~~v~~iSA~~g~gi~~L~~~l~~~~~------------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~ 195 (368)
T 3h2y_A 134 EDVFLISAAKGQGIAELADAIEYYRG------------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTS 195 (368)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHT------------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEE
T ss_pred ccEEEEeCCCCcCHHHHHhhhhhhcc------------------cceEEEecCCCCChhHHHHHHHhhhccccccceecC
Confidence 26899999999999999999986432 2479999999999999999999752 44578
Q ss_pred CCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHH
Q psy17089 212 DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE 291 (419)
Q Consensus 212 ~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~ 291 (419)
+.+|+|.+.....+ +..+.++||||+.+.....+.+..-. ..........+.+++++|........++..++.+..
T Consensus 196 ~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~~~-l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~ 271 (368)
T 3h2y_A 196 HFPGTTLDLIDIPL---DEESSLYDTPGIINHHQMAHYVGKQS-LKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG 271 (368)
T ss_dssp CCC----CEEEEES---SSSCEEEECCCBCCTTSGGGGSCHHH-HHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES
T ss_pred CCCCeecceEEEEe---cCCeEEEeCCCcCcHHHHHHHhhHHH-HHHhccccccCceEEEEcCCCEEEEcceEEEEEecC
Confidence 99999987665443 23489999999977653322221110 111111356788999999854322222222444445
Q ss_pred cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccC
Q psy17089 292 SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (419)
Q Consensus 292 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 337 (419)
.+.|+++|+||+|.......+...+.+++.+.. .+.+.++.+
T Consensus 272 ~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~----~l~p~~~~~ 313 (368)
T 3h2y_A 272 GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD----LLSPPTPEE 313 (368)
T ss_dssp SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT----TBCSSCHHH
T ss_pred CCceEEEEecCccccccccHHHHHHHHHHHhCC----ccCCCchhh
Confidence 678999999999998776666666667776663 344445443
No 56
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.89 E-value=5.6e-23 Score=179.24 Aligned_cols=162 Identities=19% Similarity=0.144 Sum_probs=112.1
Q ss_pred ccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHH
Q psy17089 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVI 256 (419)
Q Consensus 179 ~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~ 256 (419)
....++|+++|.+|||||||+|+|++... .....++.+.+.....+.+++ ..+.+|||||+.+. . .
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------~-~ 90 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTF-CEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF----------N-S 90 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG----------H-H
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCC-CcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH----------H-H
Confidence 35679999999999999999999998753 223345555566666666665 36888999998332 2 2
Q ss_pred HHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 257 KTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 257 ~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
....+++.+|++++|+|++++.+.++. .++..+.. .+.|+++|+||+|+.+..... .++.........+.++++
T Consensus 91 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~~ 168 (192)
T 2il1_A 91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT--RQQGEKFAQQITGMRFCE 168 (192)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHTSTTCEEEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHhcCCCeEEE
Confidence 234678899999999999987666554 34444443 479999999999996432211 111122222333578999
Q ss_pred EeccCCCCHHHHHHHHHHHHhh
Q psy17089 333 ISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+||++|.|++++|+.|.+.+.+
T Consensus 169 ~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 169 ASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 57
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=5.1e-23 Score=179.78 Aligned_cols=161 Identities=18% Similarity=0.134 Sum_probs=118.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++... .....++++.+.....+..++ ..+.+|||||+..... .
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 81 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-----------I 81 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT-----------T
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh-----------h
Confidence 3678999999999999999999997643 344556777777777777776 4688899999854431 1
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 332 (419)
...+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+..... .....+...+ ++++++
T Consensus 82 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (196)
T 3tkl_A 82 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL----GIPFLE 157 (196)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT----TCCEEE
T ss_pred HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHc----CCcEEE
Confidence 23578899999999999987554443 34444444 378999999999997543221 1222222222 368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+||++|.|++++|+++.+.+....
T Consensus 158 ~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 158 TSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp ECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 58
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=1.1e-22 Score=176.44 Aligned_cols=164 Identities=27% Similarity=0.405 Sum_probs=121.9
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|++|||||||+|+|++.. ..++.++++|.+.....+..++..+.+|||||+....... .++.. ...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~---~~~ 79 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS--IDEII---ARD 79 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS--HHHHH---HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc--HHHHH---HHH
Confidence 56899999999999999999999875 4667888999988888888888999999999997664211 01111 112
Q ss_pred HHh--hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCC
Q psy17089 261 SIL--EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (419)
Q Consensus 261 ~~~--~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 338 (419)
+++ .+|++++|+|+++. .....++..+.+.+.|+++|+||+|+..........+.+.+.+. ++++++||++|
T Consensus 80 ~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~ 153 (188)
T 2wjg_A 80 YIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG----VKVVPLSAAKK 153 (188)
T ss_dssp HHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----SCEEECBGGGT
T ss_pred HHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhC----CCeEEEEecCC
Confidence 333 59999999999863 33445667777789999999999998533211111222333332 68999999999
Q ss_pred CCHHHHHHHHHHHHhhcC
Q psy17089 339 NNINSFMESINHVYDSSI 356 (419)
Q Consensus 339 ~gv~~l~~~i~~~~~~~~ 356 (419)
.|++++|+.+.+.+....
T Consensus 154 ~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 154 MGIEELKKAISIAVKDKK 171 (188)
T ss_dssp BSHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999887655
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.89 E-value=1.6e-22 Score=171.37 Aligned_cols=157 Identities=20% Similarity=0.144 Sum_probs=110.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+.++|+++|.+|||||||+|+|++... ...+.+++.+.....+..++. .+.+|||||+.+.. ...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-----------~~~ 68 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-----------SMR 68 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-----------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCC--cccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH-----------HHH
Confidence 458999999999999999999997642 233444444444555666654 48889999985443 122
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++++|+|++++.+..+. .++..+.+ .+.|+++|+||+|+.+.... ......+...+ +.++++
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (167)
T 1kao_A 69 DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW----GCPFME 144 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----TSCEEE
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHh----CCCEEE
Confidence 3577889999999999987555443 33433333 47999999999998643221 11112222222 358999
Q ss_pred EeccCCCCHHHHHHHHHHHHhh
Q psy17089 333 ISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+||++|.|++++++.+.+.+.+
T Consensus 145 ~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 145 TSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999987754
No 60
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.89 E-value=5.5e-23 Score=176.94 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=115.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++.. ....+.+++.......+..++. .+.+|||||+.+....+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~---------- 74 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR---------- 74 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHH----------
Confidence 366899999999999999999999874 3445666666655566666664 67789999996654221
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHH----HcCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIY----ESGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (419)
..+++.+|++++|+|+++..+.... .++..+. ..+.|+++|+||+|+.+.... ......+... .+++++
T Consensus 75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----~~~~~~ 149 (181)
T 2fn4_A 75 -EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS----HHVAYF 149 (181)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH----TTCEEE
T ss_pred -HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH----cCCeEE
Confidence 2467889999999999987555543 3333332 257899999999999653221 1111222222 246899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhcCC
Q psy17089 332 FISAIKLNNINSFMESINHVYDSSII 357 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~~~ 357 (419)
++||++|.|++++|+.|.+.+.+...
T Consensus 150 ~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 150 EASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998876543
No 61
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.89 E-value=7.7e-23 Score=173.61 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=109.0
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+.++|+++|.+|||||||+|+|++... ...+.+++.......+..++ ..+.+|||||+.+... ..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~~ 68 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-----------MR 68 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-----------HH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-----------HH
Confidence 458999999999999999999997642 23344444444444444443 4678899999966542 12
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.... .+....+.+. ....++++
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~ 145 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ---WCNCAFLE 145 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH---TTSCEEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH---ccCCcEEE
Confidence 2567889999999999987554443 34444443 47999999999999653221 1111222222 23578999
Q ss_pred EeccCCCCHHHHHHHHHHHHh
Q psy17089 333 ISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~ 353 (419)
+||++|.|++++++++.+.+.
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHHT
T ss_pred ecCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987653
No 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.89 E-value=3.4e-23 Score=178.10 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=107.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+.+||+++|.+|||||||+++|.+..... +.++..+.....+..++. .+.+|||||+.+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------------- 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------------- 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch----------------
Confidence 56899999999999999999999765322 233333444555566554 577899999843
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH------cCCcEEEEEEcccCCChh----hHHHHHHHHHHHcCCCCC
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE------SGRSLIVCVNKWDSIIHN----QRKIIKNNIKKKLNFLSF 327 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~------~~~~~iiv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~ 327 (419)
..+++.+|++++|+|++++.+..+.. +++++.. .+.|+++|+||+|+.... ..++. ..+.... .+
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-~~~~~~~---~~ 142 (178)
T 2iwr_A 67 AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA-RALXADM---KR 142 (178)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH-HHHHHHH---SS
T ss_pred hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH-HHHHHhh---cC
Confidence 14678899999999999987666653 3334433 378999999999994211 11111 1222222 24
Q ss_pred CcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 328 AMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 328 ~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
.+++++||++|.|++++|+.+.+.+..
T Consensus 143 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 143 CSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp EEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999987654
No 63
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.89 E-value=6.5e-23 Score=174.61 Aligned_cols=159 Identities=21% Similarity=0.169 Sum_probs=110.0
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|+|||||+|+|++... .....++++.+.....+..++ ..+.+|||||+.+.... .
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------~ 69 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI-----------T 69 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC-----------C
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh-----------H
Confidence 458999999999999999999997653 333445556555555566655 36788999998554421 2
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......+....+.+.+ +++++++|
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~S 145 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL----GIPFIESS 145 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH----TCCEEECB
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHc----CCeEEEEE
Confidence 2577899999999999987554443 34444444 3789999999999953222111222233332 25899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhc
Q psy17089 335 AIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~~ 355 (419)
|++|.|++++|+.+.+.+.+.
T Consensus 146 a~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 146 AKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 64
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=179.88 Aligned_cols=164 Identities=18% Similarity=0.096 Sum_probs=103.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
.+.++|+++|.+|||||||+++|++... ...+.+++.+.....+..++. .+.+|||||+.+.. ..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-----------~~ 98 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD-----------RL 98 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh-----------HH
Confidence 3579999999999999999999997642 233444555544555566554 67889999984332 11
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhHHHHH----------HHHHHHcC
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIK----------NNIKKKLN 323 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~ 323 (419)
...+++.+|++++|+|++++.++... .|+..+.. .+.|+++|+||+|+.......+.. ++......
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 178 (214)
T 2j1l_A 99 RPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR 178 (214)
T ss_dssp ------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHH
Confidence 22578899999999999987666654 35555554 379999999999997654321111 11122222
Q ss_pred CCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 324 FLSFAMFNFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
..+..+++++||++|.|++++|+.+.+.+.+.+
T Consensus 179 ~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 179 SVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 223348999999999999999999999877654
No 65
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.89 E-value=5.4e-23 Score=180.26 Aligned_cols=156 Identities=13% Similarity=0.093 Sum_probs=105.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+..+|+++|++|||||||+++|.+.......+..+. ....+.+++..+.+|||||+...... ...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~----~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------~~~ 88 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP----TSEELTIAGMTFTTFDLGGHIQARRV-----------WKN 88 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCC----SCEEEEETTEEEEEEEECC----CCG-----------GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCc----eeEEEEECCEEEEEEECCCcHhhHHH-----------HHH
Confidence 457999999999999999999998754332222222 23566777889999999999554421 124
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHH----------cC--
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKK----------LN-- 323 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~----------~~-- 323 (419)
+++.+|++++|+|++++.+..+. .++..+.+ .+.|+++|+||+|+......++..+.+... +.
T Consensus 89 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKEL 168 (198)
T ss_dssp GGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccc
Confidence 67899999999999988766654 34444432 579999999999997533333332222211 00
Q ss_pred CCCCCcEEEEeccCCCCHHHHHHHHHHH
Q psy17089 324 FLSFAMFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
.....+++++||++|.|++++|+++.+.
T Consensus 169 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 169 NARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 1234689999999999999999998754
No 66
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.89 E-value=8.1e-22 Score=166.79 Aligned_cols=156 Identities=16% Similarity=0.143 Sum_probs=110.6
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.++|+++|.+|+|||||+|+|++... ...+.+++.+.....+..++. .+.+|||||+.+.. ....
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~~ 69 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-----------AMRD 69 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-----------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-----------HHHH
Confidence 57999999999999999999997642 334445555544555555554 56789999996654 1122
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.+|++++|+|+++..+..+. .++..+.. .+.|+++|+||+|+.+..........+.+.+ +.+++++|
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~S 145 (166)
T 2ce2_X 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSY----GIPYIETS 145 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH----TCCEEEEC
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHc----CCeEEEec
Confidence 567889999999999987554443 34444443 2799999999999976322222222333333 25899999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q psy17089 335 AIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (419)
|++|.|++++++.+.+.+.+
T Consensus 146 a~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 146 AKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987653
No 67
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=179.18 Aligned_cols=160 Identities=19% Similarity=0.098 Sum_probs=116.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||+......+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------- 75 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT---------- 75 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC-CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH----------
Confidence 4668999999999999999999998754 345566777777777777777 578889999985554221
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH--cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE--SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 333 (419)
..+++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+..... .....+.... +++++++
T Consensus 76 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~ 150 (181)
T 3tw8_B 76 -STYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM----GIQLFET 150 (181)
T ss_dssp -GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCCEEEC
T ss_pred -HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc----CCeEEEE
Confidence 24678899999999999876555543 4454444 358999999999986532211 1112222222 3689999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc
Q psy17089 334 SAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
||++|.|++++|+.+.+.+...
T Consensus 151 Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 151 SAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 68
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.89 E-value=6.9e-23 Score=174.42 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=104.0
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
.+||+++|.+|||||||+++|++...... ..++.+.+.....+..++. .+.+|||||+.+.. .....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~ 70 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG----------GWLQD 70 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC------------------C
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccc----------hhhhh
Confidence 47999999999999999999997643333 3344556666666666664 56689999995432 11122
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
.+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.... .+....+.+.. +++++++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~ 146 (169)
T 3q85_A 71 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL----SCKHIET 146 (169)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----TCEEEEC
T ss_pred hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc----CCcEEEe
Confidence 467789999999999987555544 34444443 27999999999999643221 11122222222 3689999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q psy17089 334 SAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (419)
||++|.|++++|+.+.+.+..
T Consensus 147 Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 147 SAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred cCccCCCHHHHHHHHHHHHHh
Confidence 999999999999999987754
No 69
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.89 E-value=1.7e-22 Score=179.18 Aligned_cols=157 Identities=22% Similarity=0.235 Sum_probs=105.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe---CeeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN---NKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+.++|+++|.+|||||||+++|++.. ....+++++.+... +.++ +..+.+|||||+ +.+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~----------~~~~~~~ 71 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGH----------ESLRFQL 71 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCC----------HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEE--EEecCCCccEEEEEECCCC----------hhHHHHH
Confidence 56899999999999999999999765 33445555544433 4454 568999999999 4444323
Q ss_pred HHHHHhhcCEEEEEecCCCCCC-H-HHHHHHH-HHH-----HcCCcEEEEEEcccCCChhhHHHHHHHHHHHcC------
Q psy17089 258 TLKSILEANVVILLLDAQQNIS-A-QDINIAN-FIY-----ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN------ 323 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~-~-~~~~~~~-~~~-----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~------ 323 (419)
...+++.+|++++|+|+++... . ....++. .+. ..+.|+++|+||+|+..........+.+.+.+.
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 151 (214)
T 2fh5_B 72 LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTR 151 (214)
T ss_dssp HHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccc
Confidence 3457899999999999987311 1 1112222 222 236899999999999765444434444333222
Q ss_pred ---------------CCC-------------CCcEEEEeccCC------CCHHHHHHHHHHH
Q psy17089 324 ---------------FLS-------------FAMFNFISAIKL------NNINSFMESINHV 351 (419)
Q Consensus 324 ---------------~~~-------------~~~~~~~SA~~g------~gv~~l~~~i~~~ 351 (419)
... .++++++||++| .|++++|++|.+.
T Consensus 152 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 152 SAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp C------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 567999999999 9999999999864
No 70
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.89 E-value=1.3e-22 Score=174.13 Aligned_cols=160 Identities=18% Similarity=0.098 Sum_probs=111.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++... .....++++.+.....+.+++. .+.+|||||+.+ +. ..
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~-~~ 72 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER----------FR-SL 72 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG----------GH-HH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh----------hh-hh
Confidence 3568999999999999999999997642 2334455555555666666664 788899999833 22 22
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH-------cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCc
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE-------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAM 329 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 329 (419)
...+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......+....+.. .....+
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~---~~~~~~ 149 (177)
T 1wms_A 73 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR---DNGDYP 149 (177)
T ss_dssp HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH---HTTCCC
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH---hcCCce
Confidence 23578899999999999987655543 24444432 57899999999999632211111122221 133578
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 330 FNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 330 ~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
++++||++|.|++++|+.+.+.+..
T Consensus 150 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 150 YFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987754
No 71
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.89 E-value=7.1e-22 Score=172.15 Aligned_cols=160 Identities=24% Similarity=0.375 Sum_probs=119.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchh-hHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK-GIMHEMTKQTKQAI 80 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~ 80 (419)
.++|+|+|.+|||||||+|+|++.......+.+++|.+..... . +..+.+|||||+.....+ .....+......++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL--V-NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE--E-TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE--E-CCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 4799999999999999999999987555566677777655332 2 457889999997543211 11223444444455
Q ss_pred HhC---CEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-------hhHHh-cCCCCeEEEeeccCC
Q psy17089 81 IES---DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFYE-LGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~---d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~-~~~~~~~~vSa~~~~ 149 (419)
..+ +++++|+|+..+.......+.+++...+.|+++|+||+|+...... .++.. .+..+++++||++|.
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGE 179 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCT
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 554 9999999999888888888899999889999999999999865543 12222 243489999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|+++++++|.+.+++
T Consensus 180 gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 180 GISELLDLISTLLKE 194 (195)
T ss_dssp THHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999987764
No 72
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.89 E-value=4.6e-23 Score=179.49 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=109.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|.+|||||||+++|.+....... .|.......+.+++..+.+|||||+.+.... ...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~ 86 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRL-----------WKD 86 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEETTEEEEEEECCCSGGGTTS-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEECCEEEEEEECCCCHHHHHH-----------HHH
Confidence 5579999999999999999999976543222 2333345667778899999999999554321 124
Q ss_pred HHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHH-------cCCCCCC
Q psy17089 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKK-------LNFLSFA 328 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~ 328 (419)
+++.+|++++|+|++++.+.++. .++..+.. .+.|+++|+||+|+.+....++..+.+... +.....+
T Consensus 87 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPV 166 (190)
T ss_dssp GCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCE
T ss_pred HHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceE
Confidence 67889999999999998776654 34444432 579999999999997633322222221110 0112346
Q ss_pred cEEEEeccCCCCHHHHHHHHHH
Q psy17089 329 MFNFISAIKLNNINSFMESINH 350 (419)
Q Consensus 329 ~~~~~SA~~g~gv~~l~~~i~~ 350 (419)
+++++||++|.|++++|+++.+
T Consensus 167 ~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 167 EVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp EEEECBTTTTBSHHHHHHHHHT
T ss_pred EEEEeECCcCCCHHHHHHHHHh
Confidence 8999999999999999999875
No 73
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=4.5e-23 Score=182.16 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=112.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCee--EEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...+||+++|.+|||||||+|+|.+........+++++.+.....+.+++.. +.+|||+|+.. .+.+ .
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~-------~~~~--l- 104 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG-------ENEW--L- 104 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH-------HHHH--H-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc-------hhhh--H-
Confidence 3568999999999999999999997654445555666667666667777764 56799999832 1111 1
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 331 (419)
...+++.+|++++|+|+++..++.... ++..+.+ .++|+++|+||+|+.+..... +....+...+ +++++
T Consensus 105 ~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~----~~~~~ 180 (211)
T 2g3y_A 105 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF----DCKFI 180 (211)
T ss_dssp HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEE
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHc----CCEEE
Confidence 224677899999999999876666543 4444543 379999999999996432111 1111222222 36899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhh
Q psy17089 332 FISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
++||++|.|++++|+.+.+.+..
T Consensus 181 e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 181 ETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987754
No 74
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=1.3e-22 Score=174.23 Aligned_cols=161 Identities=14% Similarity=0.068 Sum_probs=113.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC---eeEEEEeCCCCCCCCcchHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN---KKYILIDTAGIRRRNKTFEVIEKFSVI 256 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~e~~~~~ 256 (419)
...++|+++|.+|||||||+++|++... .....++++.+.....+.+++ ..+.+|||||+......
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~---------- 72 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM---------- 72 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT----------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch----------
Confidence 3679999999999999999999997642 222233444566666677765 68899999999665421
Q ss_pred HHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH-----cCCc-EEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCC
Q psy17089 257 KTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE-----SGRS-LIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFA 328 (419)
Q Consensus 257 ~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~-----~~~~-~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 328 (419)
...+++.+|++++|+|++++.+.++. .++..+.. .+.| +++|+||+|+.+.... .+....+.+.. ++
T Consensus 73 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~ 147 (178)
T 2hxs_A 73 -LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN----GF 147 (178)
T ss_dssp -HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH----TC
T ss_pred -hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc----CC
Confidence 22578899999999999987655544 34444443 2556 8999999999643211 11112222222 36
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 329 MFNFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 329 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+++++||++|.|++++|+++.+.+.+..
T Consensus 148 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 148 SSHFVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 8999999999999999999998876543
No 75
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.89 E-value=4.4e-22 Score=168.88 Aligned_cols=156 Identities=18% Similarity=0.136 Sum_probs=109.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+.++|+++|.+|+|||||+|+|++.. ....+.+++.......+..++. .+.+|||||+.+.. ...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-----------~~~ 69 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-----------AIR 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-----------HHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc--cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-----------HHH
Confidence 46899999999999999999999765 2344555555555555566554 68889999984432 222
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhh--HHHHHHHHHHHcCCCCCCcEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQ--RKIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 331 (419)
..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+... ..+... +.... +++++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~ 144 (168)
T 1u8z_A 70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RADQW----NVNYV 144 (168)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-HHHHH----TCEEE
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH-HHHHc----CCeEE
Confidence 3578899999999999987555543 34444443 3799999999999965322 121211 22222 35899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhh
Q psy17089 332 FISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
++||++|.|++++|+++.+.+.+
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 145 ETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 76
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=9.8e-23 Score=187.52 Aligned_cols=159 Identities=25% Similarity=0.318 Sum_probs=124.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcch----hhHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK----KGIMHEMTKQTK 77 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~ 77 (419)
+++|+++|++|||||||+|+|+|.. ..++..+++|.+.....+.+.+..+.+|||||+.+... ....+.+... .
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~-~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH-Y 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH-H
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH-H
Confidence 4699999999999999999999985 67888999999999999999999999999999975431 1122222211 2
Q ss_pred HHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHH
Q psy17089 78 QAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIK 152 (419)
Q Consensus 78 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~ 152 (419)
.....+|++++|+|+.+ ......+..++.+.++|+++|+||+|+...... ..+. .++. +++++||++|.|++
T Consensus 81 ~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~-~~i~~SA~~g~gi~ 157 (274)
T 3i8s_A 81 ILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGC-PVIPLVSTRGRGIE 157 (274)
T ss_dssp HHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTS-CEEECCCGGGHHHH
T ss_pred HhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCC-CEEEEEcCCCCCHH
Confidence 23479999999999886 344566667777789999999999998765543 2222 4555 89999999999999
Q ss_pred HHHHHHHHhcCCc
Q psy17089 153 NFLENILTIELPY 165 (419)
Q Consensus 153 ~l~~~i~~~~~~~ 165 (419)
++++.+.+.++..
T Consensus 158 el~~~i~~~~~~~ 170 (274)
T 3i8s_A 158 ALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999877653
No 77
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.89 E-value=4.1e-23 Score=181.90 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=112.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEE--EEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYI--LIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
.+.++|+++|.+|||||||+++|++.. ....+.+++.+.....+..++..+. +|||||+.+... .
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~ 94 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-----------L 94 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSC--CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT-----------T
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCC--CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH-----------H
Confidence 366999999999999999999999654 3445556666666666666666554 899999954431 1
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEEcccCCChhhHHHHH----------HHHHHHcC
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRKIIK----------NNIKKKLN 323 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~ 323 (419)
...+++.+|++++|+|++++.+..+. .++..+... +.|+++|+||+|+.+.....+.. ++......
T Consensus 95 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 4gzl_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 174 (204)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHH
Confidence 12477899999999999998776665 355666654 89999999999997543321111 11112222
Q ss_pred CCCCCcEEEEeccCCCCHHHHHHHHHHH
Q psy17089 324 FLSFAMFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
..+..+++++||++|.|++++|+.+.+.
T Consensus 175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 175 EIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred hcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 2334579999999999999999998864
No 78
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=1.9e-23 Score=177.84 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=108.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+.++|+++|.+|||||||+|+|++... .....++.+.+.....+.+++. .+.+|||||+.+.. ...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~ 69 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDF-AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-----------SLA 69 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-----------hhh
Confidence 358999999999999999999997642 2223344444444455555543 78889999984432 122
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChh---hH-HHHHHHHHHHcCCCCCCcE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHN---QR-KIIKNNIKKKLNFLSFAMF 330 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~---~~-~~~~~~~~~~~~~~~~~~~ 330 (419)
..+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.. .. ......+.... ++++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~----~~~~ 145 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK----GLLF 145 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH----TCEE
T ss_pred hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc----CCEE
Confidence 3578899999999999987655554 34444443 478999999999996431 11 11222222222 3689
Q ss_pred EEEeccCCCCHHHHHHHHHHHH
Q psy17089 331 NFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 331 ~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
+++||++|.|++++|+++.+.+
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 146 FETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999988654
No 79
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=177.87 Aligned_cols=160 Identities=18% Similarity=0.101 Sum_probs=109.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+++|++... .....++++.+.....+.+++ ..+.+|||||+.+ +. ..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~-~~ 94 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF-SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER----------FR-TI 94 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGG----------GH-HH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh----------HH-HH
Confidence 4679999999999999999999997642 222334444555556666666 4788999999833 32 22
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhh--HHHHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQ--RKIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 331 (419)
...+++.+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... .++. ..+.+. .+..+++
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~-~~~~~~---~~~~~~~ 170 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEA-QSLAEH---YDILCAI 170 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHH-HHHHHH---TTCSEEE
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHH-HHHHHH---cCCCEEE
Confidence 34678999999999999987555443 35555554 5689999999999964321 1112 122222 2223899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 332 FISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
++||++|.|++++|++|.+.+...
T Consensus 171 ~~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 171 ETSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 80
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.88 E-value=9.8e-23 Score=180.46 Aligned_cols=152 Identities=21% Similarity=0.175 Sum_probs=107.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+||+|+|++|||||||+++|+... +.....|++..+........++. .+.||||+|++ ++......++
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe---------~~~~l~~~~~ 83 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE---------RFRSLIPSYI 83 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSSCEEEEEEECCSCTT---------TCGGGHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecceEEEEEEEECCCch---------hhhhHHHHHh
Confidence 699999999999999999999653 22333455666777777777764 56699999998 4445566789
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
++++++++|+|..+..+... .|+...... .+.|++||+||+|+...+.+ .++. ..+. .++++||++|.|
T Consensus 84 ~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~SAktg~n 162 (216)
T 4dkx_A 84 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNV-MFIETSAKAGYN 162 (216)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEEBTTTTBS
T ss_pred ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCC-eeEEEeCCCCcC
Confidence 99999999999886433322 333333222 46799999999999876654 2333 4555 789999999999
Q ss_pred HHHHHHHHHHhcCCc
Q psy17089 151 IKNFLENILTIELPY 165 (419)
Q Consensus 151 v~~l~~~i~~~~~~~ 165 (419)
++++|+.|++.+...
T Consensus 163 V~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 163 VKQLFRRVAAALPGM 177 (216)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999888754
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.88 E-value=9.8e-23 Score=177.99 Aligned_cols=161 Identities=12% Similarity=0.032 Sum_probs=107.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCC-------CCccc--eeeeEee-EEe--CeeEEEEeCCCCCCCCcch
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDT-------PGTTR--DSIKSLF-EYN--NKKYILIDTAGIRRRNKTF 247 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~-------~~~t~--~~~~~~~-~~~--~~~~~liDtpG~~~~~~~~ 247 (419)
...+||+++|.+|||||||++.+.+.......+. ...|. +.....+ ..+ ...+.+|||||+.+..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--- 88 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--- 88 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence 4679999999999999999988876532211110 01111 1111111 222 3468899999996654
Q ss_pred HHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHH----HHHHH-----cCCcEEEEEEcccCCChhhHHHHHHHH
Q psy17089 248 EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIA----NFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNI 318 (419)
Q Consensus 248 ~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~----~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~ 318 (419)
.....+++.+|++++|+|++++.+.++...+ .++.+ .+.|+++|+||+|+.+....+ ++
T Consensus 89 --------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~----~~ 156 (198)
T 3t1o_A 89 --------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVE----MV 156 (198)
T ss_dssp --------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHH----HH
T ss_pred --------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHH----HH
Confidence 1222578999999999999976544444333 33433 579999999999997653322 23
Q ss_pred HHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 319 KKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 319 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
.+.+...+..+++++||++|.|++++|+++.+.+...
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 3334444433999999999999999999999877654
No 82
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.88 E-value=5.1e-22 Score=172.59 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=109.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
.+.++|+++|.+|||||||+|+|++.. ....+.+++.......+..++. .+.+|||||+.+.. ..
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 85 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-----------AM 85 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCC--CccccCCccceEEEEEEEECCEEEEEEEEECCChHHHH-----------HH
Confidence 467899999999999999999999764 2334555555555555666654 58889999984332 12
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
...+++.+|++++|+|+++..+..+.. ++..+.. .+.|+++|+||+|+.+.....+....+.+.+ ++++++
T Consensus 86 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~ 161 (190)
T 3con_A 86 RDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY----GIPFIE 161 (190)
T ss_dssp ----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH----TCCEEE
T ss_pred HHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHc----CCeEEE
Confidence 235788999999999999876555543 4444433 3799999999999875321111222222222 258999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+||++|.|+++++++|.+.+....
T Consensus 162 ~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 162 TSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999877543
No 83
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.88 E-value=6.8e-22 Score=172.52 Aligned_cols=158 Identities=22% Similarity=0.302 Sum_probs=112.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC-CceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcc-hhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV-KKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~ 80 (419)
++|+|+|.+|||||||+|+|++.. .......+++|.+.... ..+ ..+.+|||||+.+.. .......+......++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence 689999999999999999999875 33345566777765543 333 479999999976432 1122334555556666
Q ss_pred HhC---CEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhH---Hhc-CCCCeEEEeeccCC
Q psy17089 81 IES---DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDF---YEL-GIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~---d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~---~~~-~~~~~~~vSa~~~~ 149 (419)
..+ |++++|+|+.++.+..+.++.+++...+.|+++|+||+|+...+.. .++ +.. ...+++++||++|.
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 180 (195)
T 1svi_A 101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKK 180 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCT
T ss_pred hhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCC
Confidence 666 9999999999888888888888998889999999999999876544 111 211 22478999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|++++++.|.+.+.
T Consensus 181 gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 181 GKDEAWGAIKKMIN 194 (195)
T ss_dssp THHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987654
No 84
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.88 E-value=7.6e-22 Score=170.36 Aligned_cols=158 Identities=19% Similarity=0.206 Sum_probs=111.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCee--EEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
.+.++|+++|.+|||||||+|+|++.. ....+.+++..........++.. +.+|||||+.+....
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 82 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKI--FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM----------- 82 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHH-----------
Confidence 467999999999999999999999763 23344445444445566666665 445999998554321
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (419)
...+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.... .+....+.+.+. ++++
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~----~~~~ 158 (183)
T 3kkq_A 83 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN----IPYI 158 (183)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT----CCEE
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC----CeEE
Confidence 12567889999999999987555543 34444432 57899999999999653221 111222223322 6899
Q ss_pred EEecc-CCCCHHHHHHHHHHHHhh
Q psy17089 332 FISAI-KLNNINSFMESINHVYDS 354 (419)
Q Consensus 332 ~~SA~-~g~gv~~l~~~i~~~~~~ 354 (419)
++||+ +|.|++++|+.+.+.+.+
T Consensus 159 ~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 159 ETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp EEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred EeccCCCCCCHHHHHHHHHHHHhh
Confidence 99999 999999999999987653
No 85
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.88 E-value=1.5e-22 Score=175.03 Aligned_cols=162 Identities=15% Similarity=0.085 Sum_probs=112.9
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|||||||+++|++... ...+.+++.+.....+..++. .+.+|||||+.+... ..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~ 70 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-----------LR 70 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-----------TG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH-----------HH
Confidence 568999999999999999999996542 334445555555555556555 556899999954431 11
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH--HHHHHHHc--CCcEEEEEEcccCCChhhHHHHH----------HHHHHHcCC
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN--IANFIYES--GRSLIVCVNKWDSIIHNQRKIIK----------NNIKKKLNF 324 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~----------~~~~~~~~~ 324 (419)
..+++.+|++++|+|++++.+..+.. ++..+... +.|+++|+||+|+.+.....+.. ++.......
T Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (186)
T 1mh1_A 71 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 150 (186)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh
Confidence 24678899999999999876666653 55666554 89999999999996543211110 111111112
Q ss_pred CCCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 325 LSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 325 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
.+..+++++||++|.|++++|+.+.+.+...
T Consensus 151 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 151 IGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred cCCcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 2224899999999999999999999887643
No 86
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=5.1e-23 Score=179.47 Aligned_cols=161 Identities=18% Similarity=0.146 Sum_probs=109.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCcee-eecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV-ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
...++|+++|.+|||||||+|+|++.... ...+..+++.......+...+..+.+|||||+.+.. ...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~ 89 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH-----------SLA 89 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG-----------GGT
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH-----------hhh
Confidence 46799999999999999999999976522 223333443333222222234578899999985433 112
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+..... .++..+.... .+++++++|
T Consensus 90 ~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~~~~~~~-~~~~~~~~S 166 (192)
T 2fg5_A 90 PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP--LKDAKEYAES-IGAIVVETS 166 (192)
T ss_dssp HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHT-TTCEEEECB
T ss_pred HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHH-cCCEEEEEe
Confidence 3578899999999999987655554 34555544 379999999999996422110 1112222222 237899999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q psy17089 335 AIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (419)
|++|.|++++++.|.+.+.+
T Consensus 167 a~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC-
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999886643
No 87
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.88 E-value=5.4e-23 Score=180.54 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=111.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+++|++.. ....+.+++.+.....+..++. .+.+|||||+.+....+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------- 85 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLR---------- 85 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSG----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHh----------
Confidence 467999999999999999999999875 3445566666666666667665 56689999996654321
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhH-------------HHHHHHHHH
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQR-------------KIIKNNIKK 320 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~-------------~~~~~~~~~ 320 (419)
..+++.+|++++|+|++++.+..+. .|+..+.. .+.|+++|+||+|+...... .+....+..
T Consensus 86 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 164 (201)
T 2q3h_A 86 -PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE 164 (201)
T ss_dssp -GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred -HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH
Confidence 1467889999999999987666664 35555555 38999999999999643210 111122222
Q ss_pred HcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 321 KLNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 321 ~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
.+ +..+++++||++|.|++++|+.+.+.+...
T Consensus 165 ~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 165 EI---KAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HH---TCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred hc---CCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 22 224899999999999999999999887654
No 88
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=8.8e-23 Score=178.12 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=113.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|||||||+++|++.. ....+.+++.+.....+..++ ..+.+|||||+.+.... .
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 83 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL-----------R 83 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT-----------G
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH-----------H
Confidence 56899999999999999999999764 233445555555555556655 46788999999765421 1
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEEcccCCChhhH-------------HHHHHHHHHH
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQR-------------KIIKNNIKKK 321 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~-------------~~~~~~~~~~ 321 (419)
..+++.+|++++|+|++++.+.... .++..+.+. +.|+++|+||+|+.+.... .+....+...
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (194)
T 2atx_A 84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE 163 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHH
Confidence 2467889999999999987666554 356666654 8999999999999764211 0111112222
Q ss_pred cCCCCCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 322 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
+ +..+++++||++|.|++++|+.+.+.+.
T Consensus 164 ~---~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 164 I---GACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp H---TCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred c---CCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 2 2248999999999999999999988654
No 89
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=2.1e-22 Score=178.29 Aligned_cols=159 Identities=21% Similarity=0.165 Sum_probs=114.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||+......
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI----------- 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH-----------
Confidence 3568999999999999999999997643 344556667777667777776 47889999998544321
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
...+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+............+...+ +++++++
T Consensus 86 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~ 161 (213)
T 3cph_A 86 TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL----GIPFIES 161 (213)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH----TCCEEEC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHc----CCEEEEE
Confidence 23577899999999999987554443 34444444 3789999999999953321111222233332 2589999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q psy17089 334 SAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (419)
||++|.|++++|+.|.+.+.+
T Consensus 162 Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 162 SAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp BTTTTBSSHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 90
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.88 E-value=1.4e-22 Score=172.59 Aligned_cols=157 Identities=20% Similarity=0.249 Sum_probs=108.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCcee-eecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV-ITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVI 256 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~ 256 (419)
.+.++|+++|.+|||||||+|+|++.... ...+..+++ .....+...+ ..+.+|||||+.+.. .
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~ 70 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS--FMTKTVQYQNELHKFLIWDTAGLERFR-----------A 70 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSGGGG-----------G
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEE--EEEEEEEECCeEEEEEEEcCCCchhhh-----------c
Confidence 35689999999999999999999977521 112233333 2333344443 578899999994432 1
Q ss_pred HHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEE
Q psy17089 257 KTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 257 ~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (419)
....+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.... .+....+.... +.+++
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~ 146 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI----HAIFV 146 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT----TCEEE
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc----CCEEE
Confidence 123578899999999999987665554 45555554 46889999999999653221 11222222222 36899
Q ss_pred EEeccCCCCHHHHHHHHHHHHh
Q psy17089 332 FISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
++||++|.|++++++.+.+.+.
T Consensus 147 ~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 147 ETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEeCCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999987653
No 91
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.88 E-value=5.7e-22 Score=174.08 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=110.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC-------------------------------
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN------------------------------- 229 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------------------- 229 (419)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF-HENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 568999999999999999999998753 222333444444444444443
Q ss_pred --------eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH-cCCcEEEE
Q psy17089 230 --------KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE-SGRSLIVC 299 (419)
Q Consensus 230 --------~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~-~~~~~iiv 299 (419)
..+.+|||||+..... ....+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv 153 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILV 153 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred cccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 6788999999855431 223678899999999999988666554 34555544 56999999
Q ss_pred EEcccCCCh-hhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 300 VNKWDSIIH-NQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 300 ~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+||+|+... ...++..+... . .+++++++||++|.|++++|++|.+.+.+
T Consensus 154 ~NK~D~~~~~~~~~~~~~~~~-~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 154 ANKIDKNKFQVDILEVQKYAQ-D----NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp EECTTCC-CCSCHHHHHHHHH-H----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EECCCcccccCCHHHHHHHHH-H----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999994221 11222222222 2 23699999999999999999999887654
No 92
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.88 E-value=8.4e-23 Score=174.00 Aligned_cols=159 Identities=18% Similarity=0.107 Sum_probs=109.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+|+|++... .....++++.+.....+..++. .+.+|||||+.+.. ..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~ 71 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH-----------AL 71 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh-----------hh
Confidence 3568999999999999999999997642 2334455555555555555554 67789999984332 11
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
...+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.... .+....+.+.. +.++++
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 147 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV----GAKHYH 147 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT----TCEEEE
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHc----CCeEEE
Confidence 22467889999999999987655554 34444443 57999999999999653211 11112222222 368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhh
Q psy17089 333 ISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+||++|.|++++|+++.+.+.+
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 148 TSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp EBTTTTBSHHHHHHHHHHHHHC
T ss_pred ecCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999987653
No 93
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.3e-22 Score=175.65 Aligned_cols=160 Identities=19% Similarity=0.129 Sum_probs=114.2
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+++|++... .....++++.+.....+.+++. .+.+|||||+. +|. ..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~-~~ 91 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE----------RFR-SI 91 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGH-HH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------HHH-HH
Confidence 4679999999999999999999997642 3334455566666666777664 67889999983 332 22
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
...+++.+|++++|+|++++.++... .++..+.. .+.|+++|+||+|+.+.... .+....+.... ++++++
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 167 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ----DMYYLE 167 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH----TCCEEE
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc----CCEEEE
Confidence 33678899999999999987555443 34444443 47899999999999643221 11112222222 368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhc
Q psy17089 333 ISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
+||++|.|++++|+.+.+.+...
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 168 TSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999877653
No 94
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.88 E-value=4e-22 Score=174.40 Aligned_cols=162 Identities=12% Similarity=0.088 Sum_probs=105.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE---eCeeEEEEeCCCCCCCCcchHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY---NNKKYILIDTAGIRRRNKTFEVIEKFSVI 256 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~e~~~~~ 256 (419)
...+||+++|.+|||||||++++.+..... +..+...........+ ....+.+|||||+.++.... +
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----~--- 87 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT-----F--- 87 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT-----C---
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh-----h---
Confidence 467999999999999999999998853221 2222222111122222 23689999999996643211 0
Q ss_pred HHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHH-----cCCcEEEEEEcccCCChhhH----HHHHHHHHHHcCC---
Q psy17089 257 KTLKSILEANVVILLLDAQQNISAQDINIANFIYE-----SGRSLIVCVNKWDSIIHNQR----KIIKNNIKKKLNF--- 324 (419)
Q Consensus 257 ~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~----~~~~~~~~~~~~~--- 324 (419)
....+++.+|++|+|+|++++.......+..++.+ .+.|+++|+||+|+.+.... ..+.......+..
T Consensus 88 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 88 DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp CHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 00257889999999999998732333344444443 48999999999999874322 1122222222222
Q ss_pred -CCCCcEEEEeccCCCCHHHHHHHHHHHH
Q psy17089 325 -LSFAMFNFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 325 -~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
..+++++++||++ .|++++|..+.+.+
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 3457899999999 99999999998753
No 95
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=172.06 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=114.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
.+.++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.+++. .+.+|||||+.+.. ..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 78 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-----------AI 78 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-----------HH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-----------HH
Confidence 467899999999999999999999765 3445566666655566666664 68889999985543 12
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhh--HHHHHHHHHHHcCCCCCCcE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQ--RKIIKNNIKKKLNFLSFAMF 330 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~ 330 (419)
...+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.+... ..+... +.... +.++
T Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~ 153 (206)
T 2bov_A 79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RAEQW----NVNY 153 (206)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHHH----TCEE
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH-HHHHh----CCeE
Confidence 23577889999999999987555554 34444443 3799999999999965322 122211 22222 2589
Q ss_pred EEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 331 NFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 331 ~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+++||++|.|++++|++|.+.+..
T Consensus 154 ~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 154 VETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 96
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.88 E-value=1e-21 Score=176.10 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=113.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+|+|++|||||||+|+|++... .....+++|++.........+..+.+|||||+.+...++...........+...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHI 108 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCE-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhcc
Confidence 6899999999999999999998753 356677889988888888889999999999996432111100111222334678
Q ss_pred CCEEEEEEeCCCCCCHh---HHHHHHHHHhc--CCCEEEEEeccCCCCCCcc--------hhHHh-cC-CCCeEEEeecc
Q psy17089 83 SDIIIFIVDGRQGLVEQ---DKLITNFLRKS--GQPIVLVINKSENINSSIS--------LDFYE-LG-IGNPHIISALY 147 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~---~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~--------~~~~~-~~-~~~~~~vSa~~ 147 (419)
+|++++|+|+++..+.. ...+...+... +.|+++|+||+|+...+.. .++.. .+ ..+++++||++
T Consensus 109 ~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 188 (228)
T 2qu8_A 109 NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLT 188 (228)
T ss_dssp SEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTT
T ss_pred ccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 89999999998765432 23455555554 8899999999999876544 12222 22 13789999999
Q ss_pred CCCHHHHHHHHHHhcCCc
Q psy17089 148 GNGIKNFLENILTIELPY 165 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~~ 165 (419)
|.|++++++.|.+.+...
T Consensus 189 g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 189 GVGVEQAKITACELLKND 206 (228)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999877543
No 97
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.88 E-value=7.3e-23 Score=176.47 Aligned_cols=159 Identities=19% Similarity=0.128 Sum_probs=112.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+.++|+++|.+|||||||+|+|++.. ....+.+++.......+..++. .+.+|||||+.+....+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 71 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP----------- 71 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHH-----------
Confidence 56899999999999999999999654 3445555655555566666664 56789999997654221
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHH----HcCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIY----ESGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~----~~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++++|+|+++..+..... ++..+. ..+.|+++|+||+|+...... .+....+.+.+ ++++++
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 147 (181)
T 3t5g_A 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW----NAAFLE 147 (181)
T ss_dssp GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT----TCEEEE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHh----CCcEEE
Confidence 14677899999999999876555542 333333 247999999999999643221 11122222222 368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+||++|.|++++|+.+.+.+....
T Consensus 148 ~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 148 SSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred EecCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999887654
No 98
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.88 E-value=6.9e-22 Score=180.07 Aligned_cols=156 Identities=24% Similarity=0.354 Sum_probs=119.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+++|++|||||||+|+|++.. ..++.++++|.+.....+...+..+.+|||||+.........+.+...+.. ...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~ 83 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-KGD 83 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-HSC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-hcC
Confidence 589999999999999999999875 447788999999999999998999999999999765422222222222221 158
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHHHHHHH
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLEN 157 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~~l~~~ 157 (419)
+|++++|+|+++. .....+...+.+.+.|+++|+||+|+...+.. ..+. .++. +++++||++|.|++++++.
T Consensus 84 ~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~ 160 (258)
T 3a1s_A 84 ADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGI-PVVFTSSVTGEGLEELKEK 160 (258)
T ss_dssp CSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCS-CEEECCTTTCTTHHHHHHH
T ss_pred CCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCC-CEEEEEeeCCcCHHHHHHH
Confidence 9999999999862 33444556666679999999999998654433 2222 4565 8999999999999999999
Q ss_pred HHHhcC
Q psy17089 158 ILTIEL 163 (419)
Q Consensus 158 i~~~~~ 163 (419)
+.+...
T Consensus 161 i~~~~~ 166 (258)
T 3a1s_A 161 IVEYAQ 166 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987653
No 99
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.88 E-value=3e-22 Score=177.35 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=115.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|||||||+++|++... ...+.+++.+.....+..++. .+.+|||||+.+.... .
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 74 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL-----------R 74 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH-----------H
Confidence 568999999999999999999997642 334455555555555555554 7888999999665421 1
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEEcccCCChhhH---------HHHHHHHHHHcCCC
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQR---------KIIKNNIKKKLNFL 325 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~ 325 (419)
..+++.+|++++|+|++++.+..+. .|+..+... +.|+++|+||+|+.+.... ......+...+
T Consensus 75 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~--- 151 (212)
T 2j0v_A 75 PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI--- 151 (212)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH---
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc---
Confidence 2467899999999999987666654 355666553 8999999999998654321 11112222222
Q ss_pred CCCcEEEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 326 SFAMFNFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 326 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+..+++++||++|.|++++|+.+.+.+....
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred CCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 2258999999999999999999999887654
No 100
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.88 E-value=8.2e-23 Score=176.49 Aligned_cols=159 Identities=19% Similarity=0.105 Sum_probs=91.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+++|++.. +.....++++.+.....+.+++ ..+.+|||||+.+.. ..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 73 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-----------TI 73 (183)
T ss_dssp SEEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh-----------hh
Confidence 356899999999999999999999764 2333344555666666666666 578889999984332 11
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
...+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.... .+....+.+.. ++++++
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 149 (183)
T 2fu5_C 74 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY----GIKFME 149 (183)
T ss_dssp CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH----TCEEEE
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHc----CCeEEE
Confidence 22577899999999999987655554 35555554 37899999999999753211 11112222222 268999
Q ss_pred EeccCCCCHHHHHHHHHHHHhh
Q psy17089 333 ISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+||++|.|++++|+.+.+.+..
T Consensus 150 ~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 150 TSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp CCC---CCHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 101
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.88 E-value=3.1e-22 Score=170.00 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=111.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|||||||+|+|++... .....++++.+.....+..++. .+.+|||||+.+.... .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~ 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI-----------T 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC-----------C
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH-----------H
Confidence 568999999999999999999997642 2333444555555566666553 7888999998554321 2
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
..+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.... .+....+.+.. +.+++++|
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S 147 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL----KLRFYRTS 147 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH----TCEEEECB
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHc----CCeEEEEe
Confidence 2577899999999999987544443 34444443 48999999999999653221 11112222222 35899999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q psy17089 335 AIKLNNINSFMESINHVYD 353 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (419)
|++|.|++++++.+.+.+.
T Consensus 148 a~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 148 VKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp TTTTBSSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 102
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.88 E-value=4.6e-22 Score=172.09 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=112.8
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++.. ....+.+++.......+..++. .+.+|||||+.+.. ..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 82 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-----------AI 82 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSC--CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-----------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-----------HH
Confidence 467999999999999999999999765 3345556666555555666664 67889999985543 12
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhh--HHHHHHHHHHHcCCCCCCcE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQ--RKIIKNNIKKKLNFLSFAMF 330 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~ 330 (419)
...+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.+... ..+..+ +.+. .++++
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~ 157 (187)
T 2a9k_A 83 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RAEQ----WNVNY 157 (187)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHH-HHHH----TTCEE
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-HHHH----cCCeE
Confidence 23578899999999999987554443 34444433 3799999999999965322 121211 2222 23689
Q ss_pred EEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 331 NFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 331 ~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+++||++|.|++++|++|.+.+..
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 158 VETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 103
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=1.1e-22 Score=189.51 Aligned_cols=163 Identities=28% Similarity=0.386 Sum_probs=130.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+|+|++|||||||+|+|++...+.+++.+++|++...+.+..++.++.+|||||+.......+.+.+......++..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 47999999999999999999998766677888899988888888899999999999986111122223344444567789
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCC-Ccc----hhHHh-cCCCCeEEEeeccCCCHHHHHH
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS-SIS----LDFYE-LGIGNPHIISALYGNGIKNFLE 156 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~-~~~----~~~~~-~~~~~~~~vSa~~~~~v~~l~~ 156 (419)
+|++++|+|+.+ ++..+.++++.+...+.|+++|+||+|+... ... .++.. .+...++++||+++.|++++++
T Consensus 89 ~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~ 167 (301)
T 1ega_A 89 VELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAA 167 (301)
T ss_dssp EEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHH
T ss_pred CCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHH
Confidence 999999999987 8888888888888778999999999999872 222 22222 3445689999999999999999
Q ss_pred HHHHhcCCcc
Q psy17089 157 NILTIELPYK 166 (419)
Q Consensus 157 ~i~~~~~~~~ 166 (419)
.+.+.+++.+
T Consensus 168 ~i~~~l~~~~ 177 (301)
T 1ega_A 168 IVRKHLPEAT 177 (301)
T ss_dssp HHHTTCCBCC
T ss_pred HHHHhCCcCC
Confidence 9999887654
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=187.60 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=115.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|.+|||||||+++|++... ....| |.......+...+..+.||||||+..+... ...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~--~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------~~~ 228 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH 228 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC--EEEEE--ETTEEEEEEEETTEEEEEEECC-----CCS-----------HHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC--CCccc--ccceEEEEEecCcEEEEEEECCCCHhHHHH-----------HHH
Confidence 567999999999999999999998763 22333 444555667777889999999998554421 235
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHH-HHHHHH-H---cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 261 SILEANVVILLLDAQQNISAQDIN-IANFIY-E---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~-~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+++.+|++|+|+|+++..++.... ++..+. . .++|+++|+||+|+.+.....++...+..........+++++||
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSA 308 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA 308 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBT
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEEC
Confidence 788999999999999887776643 333332 2 38999999999999866554445444443333334568999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q psy17089 336 IKLNNINSFMESINHVYDS 354 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (419)
++|.|++++|+.|.+.+..
T Consensus 309 k~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 309 TSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTTBTHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999999987754
No 105
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.88 E-value=2.1e-22 Score=172.93 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=109.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+|+|++... .....++++.+.....+..++ ..+.+|||||+.+.. ..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 80 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-----------AV 80 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-----------HH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-----------hh
Confidence 4679999999999999999999997653 221222333333344445544 478889999985443 22
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhh--HHHHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQ--RKIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 331 (419)
...+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+... .++. ..+.+. .+++++
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~----~~~~~~ 155 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEA-KQFAEE----NGLLFL 155 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHH-HHHHHH----TTCEEE
T ss_pred HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH-HHHHHH----cCCEEE
Confidence 33678899999999999987555544 34444443 5789999999999964322 1112 122222 236899
Q ss_pred EEeccCCCCHHHHHHHHHHHHh
Q psy17089 332 FISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
++||++|.|++++|+++.+.+.
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 156 EASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 106
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=4.2e-22 Score=174.67 Aligned_cols=158 Identities=20% Similarity=0.123 Sum_probs=103.8
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||+.+.. ..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~ 93 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR-ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR-----------SI 93 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTCH-----------HH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh-----------hh
Confidence 46799999999999999999999976421 11122223333334445544 468889999985442 22
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhh-------HHHHHHHHHHHcCCCC
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQ-------RKIIKNNIKKKLNFLS 326 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~ 326 (419)
...+++.+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+... .......+....
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~---- 169 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY---- 169 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH----
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc----
Confidence 33678899999999999987655553 34444443 4799999999999953210 011112222222
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 327 FAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
+++++++||++|.|++++|..+.+.+.
T Consensus 170 ~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 170 GALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999988764
No 107
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.88 E-value=1.9e-22 Score=173.77 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=111.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|+|||||+|+|++... .....++.+.+.....+.+++ ..+.+|||||+.+.. ..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~ 77 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQF-VEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-----------SL 77 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCC-TTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-----------GG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC-CCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-----------hh
Confidence 3568999999999999999999997643 222334444444445555544 478899999984433 11
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhh--HHHHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQ--RKIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 331 (419)
...+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+... .++. ..+... .+++++
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~-~~~~~~----~~~~~~ 152 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDA-QTYAQE----NGLFFM 152 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHH-HHHHHH----TTCEEE
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHH-HHHHHH----cCCEEE
Confidence 23578899999999999987654443 45555554 3789999999999965422 1212 222222 236899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhh
Q psy17089 332 FISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
++||++|.|++++|+.|.+.+..
T Consensus 153 ~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 153 ETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp ECCSSSCTTHHHHHHHHHHTCC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 108
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.88 E-value=1.8e-22 Score=175.47 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=109.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
.+.++|+++|.+|||||||+|+|++... .....++.+.+.....+..++ ..+.+|||||+ +++....
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 86 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRF-PDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ----------ERFRKSM 86 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC-CSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS----------HHHHTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhh
Confidence 4679999999999999999999997643 222344555555556666665 47889999998 4443122
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (419)
...+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.... .+....+... .+++++
T Consensus 87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----~~~~~~ 162 (189)
T 1z06_A 87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADT----HSMPLF 162 (189)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTCCEE
T ss_pred hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHH----cCCEEE
Confidence 34678899999999999987555443 34444443 47999999999999643221 1122222222 236899
Q ss_pred EEeccCC---CCHHHHHHHHHHHHh
Q psy17089 332 FISAIKL---NNINSFMESINHVYD 353 (419)
Q Consensus 332 ~~SA~~g---~gv~~l~~~i~~~~~ 353 (419)
++||++| .|++++|+.|.+.+.
T Consensus 163 ~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 163 ETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp ECCSSSGGGGSCHHHHHHHHC----
T ss_pred EEeCCcCCcccCHHHHHHHHHHHHh
Confidence 9999999 999999999987654
No 109
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.88 E-value=4.8e-22 Score=173.06 Aligned_cols=159 Identities=16% Similarity=0.074 Sum_probs=111.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++.... ....++++.+.....+..++ ..+.+|||||+.+....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 86 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI----------- 86 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCC-C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh-----------
Confidence 46799999999999999999999976532 22334445555555566655 47888999998554421
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
...+++.+|++++|+|++++.+.++. .++..+.. .+.|+++|+||+|+.+.... .+....+.... ++++++
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 162 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH----GLIFME 162 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc----CCEEEE
Confidence 22577899999999999987555543 35555544 37999999999999643221 11112222222 368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhh
Q psy17089 333 ISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+||++|.|++++|+.|.+.+.+
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 163 TSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp ECTTTCTTHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 110
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=4.4e-22 Score=173.55 Aligned_cols=161 Identities=19% Similarity=0.135 Sum_probs=112.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
.+.++|+++|.+|||||||+|+|++... .....++.+.+.....+.+++ ..+.+|||||+.+... .
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 80 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTF-DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-----------L 80 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-----------S
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCC-CccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-----------h
Confidence 3568999999999999999999997642 222333344444444455544 5788899999854432 1
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
...+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+............+... .++++++
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~ 156 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK----HSMLFIE 156 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH----TTCEEEE
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH----cCCEEEE
Confidence 23577899999999999987555443 34444443 468999999999995432111111222222 2368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+||++|.|++++|++|.+.+....
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 157 ASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred ecCCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999887654
No 111
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.88 E-value=1.2e-22 Score=174.93 Aligned_cols=161 Identities=18% Similarity=0.170 Sum_probs=106.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe---CeeEEEEeCCCCCCCCcchHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN---NKKYILIDTAGIRRRNKTFEVIEKFSVI 256 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~e~~~~~ 256 (419)
...++|+++|.+|+|||||+|+|++... .....++++.+.....+.++ ...+.+|||||+.... .
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 73 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKY-SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-----------S 73 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCC-CTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcC-CcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-----------h
Confidence 3678999999999999999999997642 22233444455555555554 2478899999984332 1
Q ss_pred HHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH-------cCCcEEEEEEcccCCChhhH--HHHHHHHHHHcCCCC
Q psy17089 257 KTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE-------SGRSLIVCVNKWDSIIHNQR--KIIKNNIKKKLNFLS 326 (419)
Q Consensus 257 ~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~ 326 (419)
....+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+...... ......+... ..
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~---~~ 150 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS---LG 150 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH---TT
T ss_pred hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh---cC
Confidence 223577899999999999987555443 34444432 57899999999999643211 1111222221 33
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 327 FAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
..+++++||++|.|++++|+.+.+.+.+.
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 151 DIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp SCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999876543
No 112
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.88 E-value=1.9e-22 Score=177.75 Aligned_cols=161 Identities=19% Similarity=0.127 Sum_probs=116.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++. .+.+|||||+.+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 73 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI----------- 73 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH-----------
Confidence 3568999999999999999999997653 3334456666666666666664 7888999998665422
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
...+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.... .+....+... .+.++++
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~ 149 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA----NKMPFLE 149 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH----TTCCEEE
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH----cCCeEEE
Confidence 12467889999999999987665554 34444443 46899999999999753221 1111222222 2368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+||++|.|++++|+.+.+.+....
T Consensus 150 ~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 150 TSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999887643
No 113
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=9.6e-22 Score=179.85 Aligned_cols=174 Identities=19% Similarity=0.128 Sum_probs=124.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCC-ccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG-TTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
...++|+++|.+|||||||+|+|++...+..+..++ +|.+.....+.+++..+.||||||+.+.....+..-+......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999887555555555 7888887888888999999999999776533222111112333
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHc-----CCcEEEEEE-cccCCChhhHHHH--------HHHHHHHcCC
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDINIANFIYES-----GRSLIVCVN-KWDSIIHNQRKII--------KNNIKKKLNF 324 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~N-K~Dl~~~~~~~~~--------~~~~~~~~~~ 324 (419)
..+++.+|++++|+|++. .+..+..+++++.+. +.|.++|+| |+|+.... .... ...+...+..
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTT
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCC
Confidence 457889999999999995 667777777777764 678877787 99997532 2211 1112222222
Q ss_pred CC--CCcEEEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 325 LS--FAMFNFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 325 ~~--~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
.. +.+ +++||++|.|++++|+.|.+.+....
T Consensus 178 ~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 178 RICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp CEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEecC-cccccccHHHHHHHHHHHHHHHHhCC
Confidence 11 122 78999999999999999999988755
No 114
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.3e-22 Score=171.46 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=106.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+.++|+++|.+|||||||+|+|++... .....+ +...........++ ..+.+|||||+.+.. ...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~ 68 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTF-RESYIP-TVEDTYRQVISCDKSICTLQITDTTGSHQFP-----------AMQ 68 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCC-CSSCCC-CSCEEEEEEEEETTEEEEEEEEECCSCSSCH-----------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCC-CccccEEEEEEECCEEEEEEEEECCCchhhH-----------HHH
Confidence 458999999999999999999998642 111222 22222223333333 468899999985543 122
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH-----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE-----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (419)
..+++.+|++++|+|++++.+..+. .++..+.+ .+.|+++|+||+|+.+.... ......+.... +++++
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~ 144 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW----KCAFM 144 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----TCEEE
T ss_pred HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh----CCeEE
Confidence 3577889999999999986554443 34544544 37999999999998654221 11112222222 36899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 332 FISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
++||++|.|++++++++.+.+..+
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 145 ETSAKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp ECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred EecCCCCcCHHHHHHHHHHHHhhh
Confidence 999999999999999999876543
No 115
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.88 E-value=3.7e-22 Score=171.43 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=111.8
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
+.++|+++|.+|||||||+|+|++... .....++++.+.....+.+++. .+.+|||||+.+... ..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-----------~~ 80 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LI 80 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-----------GS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH-----------HH
Confidence 558999999999999999999997643 3334556666666666777664 788899999854431 12
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhh--HHHHHHHHHHHcCCCCCCcEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQ--RKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+... ..+.. .+.... ++++++
T Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~~----~~~~~~ 155 (179)
T 2y8e_A 81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE-RKAKEL----NVMFIE 155 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHH-HHHHHH----TCEEEE
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHH-HHHHHc----CCeEEE
Confidence 2567899999999999986544443 34444433 4799999999999964322 11111 122222 368999
Q ss_pred EeccCCCCHHHHHHHHHHHHh
Q psy17089 333 ISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~ 353 (419)
+||++|.|++++++.|.+.+.
T Consensus 156 ~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 156 TSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp EBTTTTBSHHHHHHHHHHTCC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987654
No 116
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.7e-22 Score=174.07 Aligned_cols=153 Identities=20% Similarity=0.142 Sum_probs=109.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++... .....++.+.+.....+.+++ ..+.+|||||+.. +......++
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~ 85 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTF-DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER---------FRTLTPSYY 85 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG---------GCCSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh---------hhhhhHHHh
Confidence 5899999999999999999997642 123334455555556666665 4688999999873 223455678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...... .++. ..+. .++++||+++.|
T Consensus 86 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 164 (195)
T 1x3s_A 86 RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSM-LFIEASAKTCDG 164 (195)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCC-EEEEecCCCCCC
Confidence 89999999999886433222 223333333 36799999999999654332 2222 3444 789999999999
Q ss_pred HHHHHHHHHHhcCCcc
Q psy17089 151 IKNFLENILTIELPYK 166 (419)
Q Consensus 151 v~~l~~~i~~~~~~~~ 166 (419)
++++++.|.+.+.+..
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 165 VQCAFEELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998877653
No 117
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.87 E-value=1.2e-22 Score=172.92 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=106.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe--CeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|||||||+|+|++..... ...+..+.+.....+..+ +..+.+|||||+.+.. ...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~ 72 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE-FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-----------SLA 72 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh-----------hhh
Confidence 56899999999999999999999764321 122233333333344444 4578899999985432 112
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhh--HHHHHHHHHHHcCCCCCCcEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQ--RKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+... .++. ..+... .+.++++
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~-~~~~~~----~~~~~~~ 147 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEA-QSYADD----NSLLFME 147 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHH----TTCEEEE
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHH-HHHHHH----cCCeEEE
Confidence 3578899999999999987555443 34444443 3789999999999864321 1111 112222 2468999
Q ss_pred EeccCCCCHHHHHHHHHHHHh
Q psy17089 333 ISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~ 353 (419)
+||++|.|++++++.|.+.+.
T Consensus 148 ~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 148 TSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CCTTTCTTHHHHHHHHHHTSC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987653
No 118
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.87 E-value=3.4e-22 Score=173.65 Aligned_cols=159 Identities=18% Similarity=0.091 Sum_probs=111.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+|+|++.... ....++.+.+.....+..++ ..+.+|||||+.+....+
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 88 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT---------- 88 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG----------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH----------
Confidence 46799999999999999999999976532 22233333333334444443 478899999987655321
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+...... .+....+.+.+ ++++++
T Consensus 89 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 163 (189)
T 2gf9_A 89 -TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDL----GFEFFE 163 (189)
T ss_dssp -GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEEE
T ss_pred -HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHc----CCeEEE
Confidence 2567889999999999987555443 35555555 37999999999999653221 11222233333 258999
Q ss_pred EeccCCCCHHHHHHHHHHHHhh
Q psy17089 333 ISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+||++|.|++++|+.|.+.+.+
T Consensus 164 ~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 164 ASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987754
No 119
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.87 E-value=1.3e-22 Score=176.85 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=110.0
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCee--EEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..+||+++|.+|||||||+|+|.+........+++++.+.....+.+++.. +.+|||+|+... +++. .
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-------~~~~---~ 74 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE-------NEWL---H 74 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----------CTT---G
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch-------hhhH---H
Confidence 468999999999999999999997544344555566666666667777764 567999998431 1111 1
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++++|+|+++..++.... ++..+.+ .+.|+++|+||+|+....... .....+... .++++++
T Consensus 75 ~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~----~~~~~~e 150 (192)
T 2cjw_A 75 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVV----FDXKFIE 150 (192)
T ss_dssp GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTCEEEE
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHH----hCCceEE
Confidence 24677899999999999876666543 4444443 378999999999986432111 111111111 2368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhc
Q psy17089 333 ISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
+||++|.|++++|+.+.+.+...
T Consensus 151 ~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 151 TSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred eccccCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999887543
No 120
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.87 E-value=1.7e-22 Score=174.85 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=112.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+|+|++... .....++++.+.....+..++ ..+.+|||||+.+ +. ..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~-~~ 75 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER----------FR-SV 75 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG----------GH-HH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH----------HH-HH
Confidence 4579999999999999999999997643 233445555555556666666 4788999999833 22 22
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH--HHHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR--KIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~ 331 (419)
...+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+...... .+. ..+... .+++++
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~----~~~~~~ 150 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEA-SRFAQE----NELMFL 150 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHH----TTCEEE
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH-HHHHHH----cCCEEE
Confidence 34678899999999999987555543 34444333 57899999999999643221 111 112222 236899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhh
Q psy17089 332 FISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
++||++|.|++++|+.+.+.+..
T Consensus 151 ~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 151 ETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 121
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.87 E-value=1.4e-21 Score=182.78 Aligned_cols=164 Identities=17% Similarity=0.195 Sum_probs=121.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE-eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
..+||+++|.+|||||||+|+|++......++.+++|.+.....+.+ ++..+.+|||||+.+. .+.+......
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~ 75 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKD 75 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHH
Confidence 45899999999999999999999875556667888999887777765 4568999999999322 1212112334
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEEcccCCChhhHH----HHHHHHHHHcCCCC--C
Q psy17089 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE-----SGRSLIVCVNKWDSIIHNQRK----IIKNNIKKKLNFLS--F 327 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~--~ 327 (419)
.+++.+|++++|+|++++.++.+.. +..++.+ .+.|+++|+||+|+....... ...++..+.....+ .
T Consensus 76 ~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 76 HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 6788999999999999988877764 3333433 389999999999998744433 23344444444444 3
Q ss_pred CcEEEEeccCCCCHHHHHHHHHHH
Q psy17089 328 AMFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 328 ~~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
++++++||++ .|+.++|..+.+.
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHT
T ss_pred eEEEEeeecC-ChHHHHHHHHHHH
Confidence 7999999999 8898888887764
No 122
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.87 E-value=1e-21 Score=171.02 Aligned_cols=160 Identities=21% Similarity=0.152 Sum_probs=111.2
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceee-eEeeEEeC-----------eeEEEEeCCCCCCCCcch
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSI-KSLFEYNN-----------KKYILIDTAGIRRRNKTF 247 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~liDtpG~~~~~~~~ 247 (419)
+..++|+++|.+|||||||+|+|++... .....++.+.+.. ...+..++ ..+.+|||||+..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER----- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-----
Confidence 4679999999999999999999997642 2223333334333 33344443 4788999999933
Q ss_pred HHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHH
Q psy17089 248 EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKK 321 (419)
Q Consensus 248 ~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~ 321 (419)
+. .....+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.... .+....+...
T Consensus 83 -----~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (195)
T 3bc1_A 83 -----FR-SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK 156 (195)
T ss_dssp -----GH-HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred -----HH-HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 22 2234678899999999999987655553 45555544 57999999999999653211 1111222222
Q ss_pred cCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 322 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
+ +++++++||++|.|++++|+.|.+.+.+.
T Consensus 157 ~----~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 157 Y----GIPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp H----TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred c----CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2 25899999999999999999999887653
No 123
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=175.40 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=109.8
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe--CeeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++...... ..++.+.+.....+... +..+.+|||||+.+... .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 90 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-----------I 90 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT-----------T
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh-----------h
Confidence 4679999999999999999999998653222 22333333333344443 35788999999966542 1
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
...+++.+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+...... ......+... .++++++
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~ 166 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN----NGLLFLE 166 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH----TTCEEEE
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHH----cCCEEEE
Confidence 22577899999999999987554443 34445543 37899999999999653211 1111122222 2368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhh
Q psy17089 333 ISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+||++|.|++++|+.|.+.+.+
T Consensus 167 ~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 167 TSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp ECTTTCTTHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 124
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.87 E-value=1e-21 Score=194.33 Aligned_cols=163 Identities=20% Similarity=0.173 Sum_probs=125.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCce------eeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENR------VITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKF 253 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~ 253 (419)
.+.++|+++|++|+|||||+++|++... ......+|+|.+.....+.+++..+.+|||||+ +.|
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh----------~~~ 86 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH----------ADL 86 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH----------HHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh----------HHH
Confidence 4678999999999999999999998651 233456688888877778888899999999998 444
Q ss_pred HHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCC---CCCCcE
Q psy17089 254 SVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF---LSFAMF 330 (419)
Q Consensus 254 ~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~ 330 (419)
. .....++..+|++++|+|++++...+..+.+..+...++|+++|+||+|+.+....+...+++.+.+.. ....++
T Consensus 87 ~-~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 87 I-RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp H-HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred H-HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 3 445578899999999999999988888888888888999999999999998765555555555554432 224789
Q ss_pred EEEeccCCCCHHHHHHHHHHHHh
Q psy17089 331 NFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 331 ~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
+++||++|.|+++|++.|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999999765
No 125
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=176.93 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=107.2
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+|+|++... .....++++.+.....+..++ ..+.+|||||+. .+. ..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~-~~ 90 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKF-KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE----------RFR-SV 90 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH----------HHS-CC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC-CccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH----------hHH-HH
Confidence 4679999999999999999999997653 233445555555556666666 578899999983 222 11
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH--HHHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR--KIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~ 331 (419)
...+++.+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+...... .+. ..+... .+++++
T Consensus 91 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~----~~~~~~ 165 (200)
T 2o52_A 91 TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SRFAQE----NELMFL 165 (200)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHH----TTCEEE
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHH-HHHHHH----cCCEEE
Confidence 23578899999999999987555543 34444443 47999999999999643221 111 112222 236899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhh
Q psy17089 332 FISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
++||++|.|++++|+.+.+.+..
T Consensus 166 ~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 166 ETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp EECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 126
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1e-21 Score=171.90 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=109.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++... .. .+..+...........++ ..+.+|||||+.+.. ..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 72 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTF-RD-TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-----------AM 72 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCC-CC-TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-----------HH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCC-CC-cccCccccceeEEEEECCEEEEEEEEeCCChHHhH-----------HH
Confidence 3568999999999999999999997642 11 222222222223333443 378889999985442 12
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH-----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (419)
...+++.+|++++|+|++++.+..+. .++..+.+ .+.|+++|+||+|+.+..........+...+ +.+++
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~ 148 (199)
T 2gf0_A 73 QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW----KCAFM 148 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH----TCEEE
T ss_pred HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh----CCeEE
Confidence 23577889999999999986554443 24444443 3789999999999975322111222222222 25899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhcCCCC
Q psy17089 332 FISAIKLNNINSFMESINHVYDSSIIHL 359 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~~~~~ 359 (419)
++||++|.|++++|+++.+.+..+....
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (199)
T 2gf0_A 149 ETSAKMNYNVKELFQELLTLETRRNMSL 176 (199)
T ss_dssp ECBTTTTBSHHHHHHHHHHHCSSSCEEC
T ss_pred EEecCCCCCHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999877655433
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.87 E-value=1.1e-22 Score=200.21 Aligned_cols=158 Identities=25% Similarity=0.322 Sum_probs=99.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+|+|++|||||||+|+|++...+++++.+++|++.....+.++|..+.+|||||+.+.. +............++.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~-~~ve~~gi~~~~~~~~~ 312 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG-EEIEHEGIRRSRMKMAE 312 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC---------------------CCCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch-hHHHHHHHHHHHhhccc
Confidence 47999999999999999999998777788999999999999999999999999999997432 11111222345567889
Q ss_pred CCEEEEEEeCCCCCCH----hHHHHHHHHHhcCCCEEEEEeccCCCCCCcc--hhHHhcCCCCeEEEeeccCCCHHHHHH
Q psy17089 83 SDIIIFIVDGRQGLVE----QDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFYELGIGNPHIISALYGNGIKNFLE 156 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~----~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~~~~~vSa~~~~~v~~l~~ 156 (419)
+|++++|+|+.++.+. ....+++.+. ++|+++|+||+|+...... .++...+..+++++||++|.|++++++
T Consensus 313 aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp CSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHH
Confidence 9999999999987776 3344444443 7899999999999876654 223333335889999999999999999
Q ss_pred HHHHhcC
Q psy17089 157 NILTIEL 163 (419)
Q Consensus 157 ~i~~~~~ 163 (419)
+|.+.+.
T Consensus 391 ~i~~~~~ 397 (476)
T 3gee_A 391 HMGDLVK 397 (476)
T ss_dssp HHTHHHH
T ss_pred HHHHHHh
Confidence 9998775
No 128
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.87 E-value=5.9e-22 Score=174.01 Aligned_cols=161 Identities=17% Similarity=0.120 Sum_probs=110.2
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+++|.+... .....++++.. ....+..++. .+.+|||||+.+....
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 89 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFEN-YIADIEVDGKQVELALWDTAGQEDYDRL----------- 89 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCC-CEEEEEETTEEEEEEEECCCCSGGGTTT-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccce-EEEEEEECCEEEEEEEEECCCchhHHHH-----------
Confidence 4678999999999999999999997653 22222333333 2334555554 7788999998544311
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEEcccCCChhhHHHH----------HHHHHHHcC
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRKII----------KNNIKKKLN 323 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~----------~~~~~~~~~ 323 (419)
...+++.+|++++|+|++++.+..+. .++..+... +.|+++|+||+|+.+.....+. .++......
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 169 (201)
T 2gco_A 90 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMAN 169 (201)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHH
Confidence 12467889999999999987655554 355555554 8999999999999765322111 011111222
Q ss_pred CCCCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 324 FLSFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
..+..+++++||++|.|++++|+.|.+.+.
T Consensus 170 ~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 170 RISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 223348999999999999999999988653
No 129
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.87 E-value=8.5e-23 Score=176.09 Aligned_cols=157 Identities=22% Similarity=0.210 Sum_probs=102.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|||||||+++|.+.. ....+.+++.+.....+..++. .+.+|||||+.+.... .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL-----------R 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC--CC----------CBCCCC-------CEEECCCC-CTTTTT-----------G
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh-----------H
Confidence 56899999999999999999999764 2233444444333333444444 4569999999665421 1
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHHH--HHHHHHH--cCCcEEEEEEcccCCChhhH-----------HHHHHHHHHHcC
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDIN--IANFIYE--SGRSLIVCVNKWDSIIHNQR-----------KIIKNNIKKKLN 323 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~~iiv~NK~Dl~~~~~~-----------~~~~~~~~~~~~ 323 (419)
..+++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+.... ......+...+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 152 (182)
T 3bwd_D 74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI- 152 (182)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH-
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc-
Confidence 24678899999999999876666643 5555555 37999999999998654321 11112222222
Q ss_pred CCCCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 324 FLSFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
+..+++++||++|.|++++|+.+.+.+.
T Consensus 153 --~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 153 --GAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp --TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred --CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 2248999999999999999999988653
No 130
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=3.2e-22 Score=196.86 Aligned_cols=157 Identities=33% Similarity=0.424 Sum_probs=124.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCC-CcchhhHHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE-PEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~~~~~~~ 81 (419)
.+|+|+|++|||||||+|+|++...+++++++++|+|.....+.++|..+.+|||||+. +.. +............++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~-~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN-DLVERLGIERTLQEIE 322 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC-TTCCCCCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccch-hhHHHHHHHHHHHHhh
Confidence 58999999999999999999998767788999999999999999999999999999987 432 1111111234456789
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHHhcCCCCeEEEeeccCCCHHHHHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYELGIGNPHIISALYGNGIKNFLENI 158 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~vSa~~~~~v~~l~~~i 158 (419)
.+|++++|+|+.++.+..+..+++.+ .++|+++|+||+|+...... .++...+ .+++++||++|.|++++++.|
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~~~~~~~~~~-~~~i~iSAktg~Gi~eL~~~l 399 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEIKNKLGTD-RHMVKISALKGEGLEKLEESI 399 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHHHHHHTCS-TTEEEEEGGGTCCHHHHHHHH
T ss_pred cccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHHHHHHHhcCC-CcEEEEECCCCCCHHHHHHHH
Confidence 99999999999888777777776666 37899999999999764222 2222211 378999999999999999999
Q ss_pred HHhcC
Q psy17089 159 LTIEL 163 (419)
Q Consensus 159 ~~~~~ 163 (419)
.+.+.
T Consensus 400 ~~~~~ 404 (482)
T 1xzp_A 400 YRETQ 404 (482)
T ss_dssp HHHTH
T ss_pred HHHHh
Confidence 97644
No 131
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.87 E-value=1.5e-22 Score=173.95 Aligned_cols=153 Identities=23% Similarity=0.326 Sum_probs=118.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
.++|+++|.+|||||||+|+|++.. ......+++|.+.....+.+++..+.+|||||++... .....++.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~ 77 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFT---------TMRARGAQ 77 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSS---------CSCCSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHH---------HHHHHHHh
Confidence 3689999999999999999999864 3344566778888777888999999999999987433 12234567
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc--hhHH-hcC-----C---CCeEEEeeccCCC
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFY-ELG-----I---GNPHIISALYGNG 150 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~--~~~~-~~~-----~---~~~~~vSa~~~~~ 150 (419)
.+|++++|+|+.++........+..+...+.|+++|+||+|+...... .+.. ..+ . .+++++||++|.|
T Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 78 VTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred hCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 899999999998877777777777777778999999999999875322 1111 111 1 2689999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.+..
T Consensus 158 v~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 158 LDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999876543
No 132
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=169.66 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=108.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...+||+++|.+|||||||+++|++.. ....+.+++.+........++ ..+.+|||||+.+... .
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~- 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKR--FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----------C- 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----------T-
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----------H-
Confidence 467999999999999999999999765 234455555544444455554 3677899999955431 1
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH------cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCc
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE------SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAM 329 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~ 329 (419)
..+++.+|++++|+|++++.+..+. .|+..+.. .+.|+++|+||+|+...... .+....+...+ +++
T Consensus 86 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~ 160 (187)
T 3c5c_A 86 -ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF----GCL 160 (187)
T ss_dssp -HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH----TCE
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc----CCc
Confidence 2477889999999999987666654 34454443 48999999999999543211 11112222222 368
Q ss_pred EEEEec-cCCCCHHHHHHHHHHHHh
Q psy17089 330 FNFISA-IKLNNINSFMESINHVYD 353 (419)
Q Consensus 330 ~~~~SA-~~g~gv~~l~~~i~~~~~ 353 (419)
++++|| ++|.|++++|+.+.+.+.
T Consensus 161 ~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 161 FFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp EEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred EEEEeecCccccHHHHHHHHHHHHh
Confidence 999999 899999999999988764
No 133
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.9e-22 Score=175.64 Aligned_cols=159 Identities=19% Similarity=0.115 Sum_probs=110.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceee-ecCCCCccceeeeEeeEE--eCeeEEEEeCCCCCCCCcchHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVI-TYDTPGTTRDSIKSLFEY--NNKKYILIDTAGIRRRNKTFEVIEKFSVI 256 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~-~~~~~~~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~e~~~~~ 256 (419)
+..+||+++|.+|||||||+|+|++..... ..+..+++. ....+.. .+..+.+|||||+ +.+. .
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~Dt~G~----------~~~~-~ 87 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF--KVKTVYRHEKRVKLQIWDTAGQ----------ERYR-T 87 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTE--EEEEEEETTTTEEEEEECHHHH----------HHCH-H
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEE--EEEEEEECCEEEEEEEEeCCCh----------HHHH-H
Confidence 467999999999999999999999754211 112223333 3333333 3457899999997 3333 2
Q ss_pred HHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEE
Q psy17089 257 KTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 257 ~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (419)
....+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.... ......+.... +++++
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~ 163 (191)
T 3dz8_A 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL----GFDFF 163 (191)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEE
T ss_pred HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc----CCeEE
Confidence 234688999999999999987555443 35555554 57999999999998543211 11122222222 36899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 332 FISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
++||++|.|++++|+.+.+.+.+.
T Consensus 164 ~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 164 EASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 134
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.87 E-value=2e-21 Score=170.81 Aligned_cols=158 Identities=20% Similarity=0.141 Sum_probs=110.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||+.+ +. ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~-~~~ 74 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER----------YR-TIT 74 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC-SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GH-HHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hc-chH
Confidence 5689999999999999999999987532 22233333334334444444 4788999999933 32 223
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.... .+....+.+.+ +++++++
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~ 150 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL----GFEFFEA 150 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH----TCEEEEC
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC----CCeEEEE
Confidence 4678899999999999987555543 34555554 47999999999999753221 11222233333 2589999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q psy17089 334 SAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (419)
||++|.|++++|++|.+.+.+
T Consensus 151 Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 151 SAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp BTTTTBSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 135
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=3e-22 Score=200.24 Aligned_cols=168 Identities=13% Similarity=0.066 Sum_probs=119.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
...++|+++|.+|||||||+|+|++.+. +... .|.+.....+.+++..+.+|||||+...... ..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~--~~~~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~~ 384 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQS--VTTI--PTVGFNVETVTYKNVKFNVWDVGGQDKIRPL-----------WR 384 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSC--CCCC--CCSSEEEEEEESSSCEEEEEEECCCGGGSGG-----------GG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCC--CCcC--CccceeEEEEEeCCEEEEEEECCCcHHHHHH-----------HH
Confidence 3568999999999999999999998762 3333 3555556667778889999999998555421 23
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEe
Q psy17089 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 334 (419)
.+++.+|++|+|+|++++.++.+.. ++..+.. .++|+++|+||+|+.+.....++...+..........+++++|
T Consensus 385 ~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 464 (497)
T 3lvq_E 385 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 464 (497)
T ss_dssp GGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECB
T ss_pred HHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEE
Confidence 5788999999999999987666643 4444433 4799999999999976544333433333222233456799999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCCCCCHH
Q psy17089 335 AIKLNNINSFMESINHVYDSSIIHLSTS 362 (419)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~~~~~~~~~ 362 (419)
|++|.|++++|++|.+.+..+..+.++.
T Consensus 465 A~~g~gi~~l~~~l~~~~~~~~~~~~~~ 492 (497)
T 3lvq_E 465 ATSGDGLYEGLTWLTSNYKSKLAAALEH 492 (497)
T ss_dssp TTTTBTHHHHHHHHHHHCC---------
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcc
Confidence 9999999999999999988877666554
No 136
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.87 E-value=1.7e-21 Score=169.14 Aligned_cols=163 Identities=29% Similarity=0.336 Sum_probs=108.2
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcch-HHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIKTLKS 261 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~e~~~~~~~~~~ 261 (419)
++|+++|.+|||||||+|+|++.. +..+..+++|.......+ . .+.+|||||+....... ...+.+... ...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDE-IVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHH-HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHH-HHHH
Confidence 689999999999999999999875 456677788776544333 2 78999999975443211 223444322 2234
Q ss_pred Hhh-c---CEEEEEecCCCCCCHHH--------------HHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcC
Q psy17089 262 ILE-A---NVVILLLDAQQNISAQD--------------INIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323 (419)
Q Consensus 262 ~~~-a---d~~i~v~d~~~~~~~~~--------------~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 323 (419)
++. + ++++.|+|... ..+ ..+...+...+.|+++|+||+|+.... .+..+.+.+.+.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~ 150 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKA---APEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFE 150 (190)
T ss_dssp HHHHGGGCCEEEEEEETTH---HHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHT
T ss_pred HHhhhccCCEEEEEEcchh---hhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhh
Confidence 444 4 45555555543 322 223445556789999999999997654 223334444444
Q ss_pred CCC---CCcEEEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 324 FLS---FAMFNFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 324 ~~~---~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
... ..+++++||++|.|++++|+.+.+.+.+..
T Consensus 151 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 151 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 210 135899999999999999999999877654
No 137
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=9.2e-22 Score=194.18 Aligned_cols=162 Identities=28% Similarity=0.451 Sum_probs=126.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcch-hhHHHHHHH-HHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK-KGIMHEMTK-QTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~-~~~~~~ 80 (419)
++|+++|++|||||||+|+|++.....+++.+++|++.....+.+++..+.+|||||+.+... +...+.+.. ....++
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~ 275 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 275 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHH
T ss_pred ceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHH
Confidence 589999999999999999999987778899999999999999999999999999999643210 000113332 344578
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-----hhHH-----hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-----LDFY-----ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-----~~~~-----~~~~~~~~~vSa~~~~~ 150 (419)
..+|++++|+|+.+++...+.++..++...++|+++|+||+|+...+.. .+.. ..+..+++++||++|.|
T Consensus 276 ~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 355 (456)
T 4dcu_A 276 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKR 355 (456)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTT
T ss_pred hhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcC
Confidence 9999999999999999999999999999999999999999999876543 1111 12345899999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.+.+.+..
T Consensus 356 v~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 356 IHTLMPAIIKASEN 369 (456)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876543
No 138
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.87 E-value=1.2e-22 Score=175.13 Aligned_cols=150 Identities=16% Similarity=0.113 Sum_probs=107.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
++|+++|++|||||||+|+|++.. +...+.+++.+.......+++. .+.+|||||+.... .....++
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~ 75 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS---------IFPQTYS 75 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTC---------CCCGGGT
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhh---------HHHHHHH
Confidence 589999999999999999999653 3555556666655677778874 56799999987432 2233457
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHH---hcCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLR---KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~---~~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.++|++++|+|..+..+... .++...++ ..+.|+++|+||+|+...+.. .++. ..+. +++++||++|.
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 154 (181)
T 3t5g_A 76 IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFLESSAKENQ 154 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCTTSHH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC-cEEEEecCCCC
Confidence 88999999999886322222 22222222 247899999999999766554 2233 3454 78999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++++.+.+.+..
T Consensus 155 ~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 155 TAVDVFRRIILEAEK 169 (181)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987654
No 139
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.87 E-value=1.3e-21 Score=169.27 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=105.4
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeecC-CCCccceeeeEeeEE-----eCeeEEEEeCCCCCCCCcchHHHHHHHH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEY-----NNKKYILIDTAGIRRRNKTFEVIEKFSV 255 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-----~~~~~~liDtpG~~~~~~~~~~~e~~~~ 255 (419)
.+||+++|++|||||||+++|.+........ .++++.+.....+.. ....+.+|||||+ ++|..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~ 71 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR----------EEFYS 71 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH----------HHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC----------HHHHH
Confidence 4799999999999999999999863222322 333334443333332 3457889999998 44432
Q ss_pred HHHHHHHhhcCEEEEEecCCCCC-CHHHH-HHHHHHHH--cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCc--
Q psy17089 256 IKTLKSILEANVVILLLDAQQNI-SAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAM-- 329 (419)
Q Consensus 256 ~~~~~~~~~ad~~i~v~d~~~~~-~~~~~-~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-- 329 (419)
. ...+++.++++++|+|++++. +.... .|+..+.. .+.|+++|+||+|+.+..............+....+++
T Consensus 72 ~-~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 72 T-HPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp T-SHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred h-hHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence 2 235778899999999999863 33333 34444443 47999999999999765443222223333444333444
Q ss_pred --EEEEeccCCC-CHHHHHHHHHHHHhhc
Q psy17089 330 --FNFISAIKLN-NINSFMESINHVYDSS 355 (419)
Q Consensus 330 --~~~~SA~~g~-gv~~l~~~i~~~~~~~ 355 (419)
++++||++|. |+++|++.+.+.+...
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 8999999997 9999999998877654
No 140
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=6.2e-22 Score=174.71 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=109.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++.... ..+.+++.......+..++ ..+.+|||||+.+....
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 89 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL----------- 89 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT-----------
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH-----------
Confidence 35689999999999999999999986532 2233333333334455555 36788999999665421
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEEcccCCChhhHHHHHH----------HHHHHcC
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRKIIKN----------NIKKKLN 323 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~----------~~~~~~~ 323 (419)
...+++.+|++++|+|++++.+.... .++..+... +.|+++|+||+|+.......+... +......
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 169 (207)
T 2fv8_A 90 RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV 169 (207)
T ss_dssp GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH
Confidence 12467889999999999987555554 355555553 899999999999975432211110 1111111
Q ss_pred CCCCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 324 FLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
..+..+++++||++|.|++++|+.|.+.+...
T Consensus 170 ~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 170 RIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred hcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 12223899999999999999999999886543
No 141
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=2.2e-21 Score=189.97 Aligned_cols=156 Identities=21% Similarity=0.272 Sum_probs=119.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceee------------------------------ecCCCCccceeeeEeeEEeC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVI------------------------------TYDTPGTTRDSIKSLFEYNN 229 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~ 229 (419)
...++|+++|++|+|||||+++|++..... ....+|+|.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 356899999999999999999996542211 11236889988888888888
Q ss_pred eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCC-------HHHHHHHHHHHHcCCc-EEEEEE
Q psy17089 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNIS-------AQDINIANFIYESGRS-LIVCVN 301 (419)
Q Consensus 230 ~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~N 301 (419)
..+.+|||||+ ++|. ..+..++..||++++|+|++++.. .+..+.+..+...++| +++|+|
T Consensus 95 ~~~~iiDTPGh----------~~f~-~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviN 163 (439)
T 3j2k_7 95 KHFTILDAPGH----------KSFV-PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLIN 163 (439)
T ss_pred eEEEEEECCCh----------HHHH-HHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEee
Confidence 99999999999 4443 445578889999999999999865 4677777888888888 999999
Q ss_pred cccCCCh----hhHHHHHHHHHHHcCCCC-----CCcEEEEeccCCCCHHHHHH
Q psy17089 302 KWDSIIH----NQRKIIKNNIKKKLNFLS-----FAMFNFISAIKLNNINSFME 346 (419)
Q Consensus 302 K~Dl~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 346 (419)
|+|+... ...++..+++...+...+ .++++++||++|.|++++.+
T Consensus 164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999642 223344444444443322 46899999999999999765
No 142
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.87 E-value=3.6e-22 Score=177.18 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=110.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...+||+++|.+|||||||+++|++... ...+.++........+..++ ..+.+|||||+.+....
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 91 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV----------- 91 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTT-----------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHH-----------
Confidence 4679999999999999999999997652 23434444443344444444 46788999999544321
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHH--HHHHHHHHHc--CCcEEEEEEcccCCChhh-------------HHHHHHHHHH
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQD--INIANFIYES--GRSLIVCVNKWDSIIHNQ-------------RKIIKNNIKK 320 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~-------------~~~~~~~~~~ 320 (419)
...+++.+|++|+|+|++++.+..+ ..|+..+... +.|+++|+||+|+.+... ..+....+..
T Consensus 92 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 171 (214)
T 3q3j_B 92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK 171 (214)
T ss_dssp GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH
Confidence 1246788999999999999877766 2466666654 899999999999964210 0111122222
Q ss_pred HcCCCCCCcEEEEeccCCCC-HHHHHHHHHHHHhhcC
Q psy17089 321 KLNFLSFAMFNFISAIKLNN-INSFMESINHVYDSSI 356 (419)
Q Consensus 321 ~~~~~~~~~~~~~SA~~g~g-v~~l~~~i~~~~~~~~ 356 (419)
.+ +..+++++||++|.| ++++|+.+.+.+....
T Consensus 172 ~~---~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 172 QL---GAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp HH---TCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred Hc---CCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 22 223899999999998 9999999999876554
No 143
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.8e-21 Score=167.44 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=109.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++.........++++.+.......+++. .+.+|||||+. ++......++
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~---------~~~~~~~~~~ 81 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE---------RFRSVTHAYY 81 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------CCG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH---------HHHHHHHHHc
Confidence 589999999999999999999865332344566677776666777775 77899999987 4445566778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 160 (180)
T 2g6b_A 82 RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL-PFMETSAKTGLN 160 (180)
T ss_dssp GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC-CEEECCTTTCTT
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999999886433222 233333333 47899999999999875543 2222 3455 899999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.+.+.+.+
T Consensus 161 i~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 161 VDLAFTAIAKELKR 174 (180)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
No 144
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.87 E-value=6.4e-22 Score=174.35 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=112.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+|+|++... .....++++.+.....+..++ ..+.+|||||+......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 73 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL----------- 73 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh-----------
Confidence 3678999999999999999999998753 233344555666556665555 47888999998544321
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH-------cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCc
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE-------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAM 329 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 329 (419)
...+++.+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+............+.. .....+
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~ 150 (207)
T 1vg8_A 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIP 150 (207)
T ss_dssp CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCC
T ss_pred HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH---hcCCce
Confidence 12467889999999999987555444 23333332 47899999999999743221111122221 133578
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 330 FNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 330 ~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
++++||++|.|++++|+.|.+.+..
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 151 YFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 145
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.87 E-value=5.2e-22 Score=181.92 Aligned_cols=154 Identities=24% Similarity=0.381 Sum_probs=116.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
.++|+++|++|||||||+|+|+|.. ..++.++|+|.+...+.+.. +..+.+|||||+.........+.+ ...++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v---~~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKV---ARDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHH---HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHH---HHHHHh
Confidence 4689999999999999999999874 45788899999987776665 778999999999855322222222 223333
Q ss_pred --hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHHHH
Q psy17089 82 --ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNF 154 (419)
Q Consensus 82 --~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~~l 154 (419)
.+|++++|+|+++ ......+...+.+.++|+++|+||+|+...... ..+. .++. +++++||++|.|++++
T Consensus 78 ~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~-~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 78 SQRADSILNVVDATN--LERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGV-PVVATSALKQTGVDQV 154 (272)
T ss_dssp TTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTS-CEEECBTTTTBSHHHH
T ss_pred cCCCCEEEEEecCCc--hHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCC-CEEEEEccCCCCHHHH
Confidence 6999999999876 233344555566679999999999998654332 2222 3465 7999999999999999
Q ss_pred HHHHHHhcC
Q psy17089 155 LENILTIEL 163 (419)
Q Consensus 155 ~~~i~~~~~ 163 (419)
++.+.+.+.
T Consensus 155 ~~~i~~~~~ 163 (272)
T 3b1v_A 155 VKKAAHTTT 163 (272)
T ss_dssp HHHHHHSCT
T ss_pred HHHHHHHHh
Confidence 999987654
No 146
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.87 E-value=9e-23 Score=179.22 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=111.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe--CeeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
.+.++|+++|.+|||||||+|+|++.... ..+.+++..........+ +..+.+|||||+.+....+
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 89 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP---------- 89 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC----------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHH----------
Confidence 46799999999999999999999987532 334444444334444433 4577899999996655321
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (419)
..+++.+|++++|+|+++..+..... ++..+.. .++|+++|+||+|+.+.... ......+.... +++++
T Consensus 90 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~ 164 (201)
T 3oes_A 90 -YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW----GATFM 164 (201)
T ss_dssp -GGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEE
T ss_pred -HHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh----CCeEE
Confidence 24678899999999999876555543 4444433 37899999999998643321 11112222222 36899
Q ss_pred EEeccCCCCHHHHHHHHHHHHhhcCC
Q psy17089 332 FISAIKLNNINSFMESINHVYDSSII 357 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~~~~~~ 357 (419)
++||++|.|++++|+.|.+.+.....
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999998876543
No 147
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=4.2e-21 Score=167.76 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=109.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|.+|||||||+++|++... ...+.++........+..++ ..+.+|||||+.+ . ...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~-----------~~~ 92 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRF--IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-T-----------IQR 92 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-C-----------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC--CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-c-----------cch
Confidence 568999999999999999999997653 22333343333344455554 4688899999965 2 122
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.... ......+...+ ++++++
T Consensus 93 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 168 (196)
T 2atv_A 93 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL----ACAFYE 168 (196)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----TSEEEE
T ss_pred hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh----CCeEEE
Confidence 3577889999999999987555443 34444433 57999999999999653211 11112222222 368999
Q ss_pred EeccCCC-CHHHHHHHHHHHHhh
Q psy17089 333 ISAIKLN-NINSFMESINHVYDS 354 (419)
Q Consensus 333 ~SA~~g~-gv~~l~~~i~~~~~~ 354 (419)
+||++|. |++++|+.+.+.+.+
T Consensus 169 ~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 169 CSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp CCTTTCTTCHHHHHHHHHHHHHH
T ss_pred ECCCcCCcCHHHHHHHHHHHHHh
Confidence 9999999 999999999987754
No 148
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=3.8e-21 Score=166.70 Aligned_cols=157 Identities=28% Similarity=0.376 Sum_probs=118.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH--
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI-- 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-- 80 (419)
++|+++|++|||||||+|+|++.. ......+++|.+.....+.+++..+.+|||||+.........+.+ ...++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~~~~~~ 83 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEII---ARDYIIN 83 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHH---HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHH---HHHHHhc
Confidence 589999999999999999999864 556778899999988899999999999999999754311111122 22233
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHHHHH
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFL 155 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~~l~ 155 (419)
..++++++|+|... ......+...+...+.|+++|+||+|+...... .++. ..+. +++++||+++.|+++++
T Consensus 84 ~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~ 160 (188)
T 2wjg_A 84 EKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELK 160 (188)
T ss_dssp HCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTS-CEEECBGGGTBSHHHHH
T ss_pred cCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCC-CeEEEEecCCCCHHHHH
Confidence 35999999999874 223344555556678999999999998654332 2333 3454 88999999999999999
Q ss_pred HHHHHhcCCcc
Q psy17089 156 ENILTIELPYK 166 (419)
Q Consensus 156 ~~i~~~~~~~~ 166 (419)
+.+.+.+....
T Consensus 161 ~~i~~~~~~~~ 171 (188)
T 2wjg_A 161 KAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHTTC-
T ss_pred HHHHHHHHhcc
Confidence 99998877653
No 149
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.86 E-value=8.5e-22 Score=175.08 Aligned_cols=159 Identities=19% Similarity=0.138 Sum_probs=109.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEe------------CeeEEEEeCCCCCCCCcch
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN------------NKKYILIDTAGIRRRNKTF 247 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~liDtpG~~~~~~~~ 247 (419)
+..++|+++|.+|||||||+|+|++... .....++++.+.....+.++ ...+.+|||||+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------- 94 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ------- 94 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc-------
Confidence 4679999999999999999999997643 22222333334444444444 357889999997
Q ss_pred HHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEEcccCCChhhH-HHHHHHHHHH
Q psy17089 248 EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKK 321 (419)
Q Consensus 248 ~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~ 321 (419)
+.+. .....+++.+|++|+|+|++++.+..+.. ++..+.. .+.|+++|+||+|+...... ......+...
T Consensus 95 ---~~~~-~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 170 (217)
T 2f7s_A 95 ---ERFR-SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK 170 (217)
T ss_dssp ---HHHH-HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred ---HhHH-hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence 4443 23346889999999999999875554432 3333322 47899999999999653221 1122222222
Q ss_pred cCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 322 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+ +++++++||++|.|++++|++|.+.+.+
T Consensus 171 ~----~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 171 Y----GIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp T----TCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred C----CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2 3689999999999999999999987654
No 150
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.8e-22 Score=179.14 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=110.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+++|++.... ....++.+.+.....+.+++ ..+.+|||||+.+....+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------- 79 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFN-MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT---------- 79 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCC-C------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC----------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH----------
Confidence 35689999999999999999999987532 22334555555556666666 478899999996654221
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++|+|+|++++.++.+. .|+..+.. .+.|+++|+||+|+...... ......+... .++++++
T Consensus 80 -~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~ 154 (223)
T 3cpj_B 80 -SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE----NQLLFTE 154 (223)
T ss_dssp -GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH----TTCEEEE
T ss_pred -HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH----cCCEEEE
Confidence 2467889999999999987666554 34555544 37899999999999643211 1111122222 2368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+||++|.|++++|+.|.+.+....
T Consensus 155 ~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 155 TSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp CCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999877654
No 151
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.86 E-value=1.5e-21 Score=165.18 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=107.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.||+++|++|||||||+|+|++.. +....| |.+.....+...+..+.+|||||+. ++......++.+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~~~ 67 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNISFTVWDVGGQD---------KIRPLWRHYFQN 67 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC--SSCCCC--CSSCCEEEEECSSCEEEEEECCCCG---------GGHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--cCcccC--cCceeEEEEEECCEEEEEEEcCCCh---------hhHHHHHHHhcc
Confidence 379999999999999999998754 223333 4445566677788899999999997 344556667899
Q ss_pred CCEEEEEEeCCCCCC--HhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcch---hHHhc-----CCCCeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSISL---DFYEL-----GIGNPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~---~~~~~-----~~~~~~~vSa~~~~ 149 (419)
+|++++|+|+.++.+ ....++...+.. .+.|+++|+||+|+....... +.... ...+++++||++|.
T Consensus 68 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (164)
T 1r8s_A 68 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 147 (164)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCc
Confidence 999999999987532 222344444432 378999999999997754321 11111 11147999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++++.+.+.+.+
T Consensus 148 gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 148 GLYEGLDWLSNQLRN 162 (164)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987654
No 152
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=3.8e-21 Score=174.24 Aligned_cols=182 Identities=14% Similarity=0.106 Sum_probs=122.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCC-CCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHH---H
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDT-PGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFS---V 255 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~---~ 255 (419)
...++|+++|.+|||||||+|+|++...+..... .++|.......+..++..+.+|||||+.+..... -+.+. .
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~--~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSK--TDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHH--HSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCc--HHHHHHHHH
Confidence 4679999999999999999999999876554332 2588888888888889999999999996654211 01111 1
Q ss_pred HHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHc------CCcEEEEEEcccCCChhhHHHHH----HHHHHHcCCC
Q psy17089 256 IKTLKSILEANVVILLLDAQQNISAQDINIANFIYES------GRSLIVCVNKWDSIIHNQRKIIK----NNIKKKLNFL 325 (419)
Q Consensus 256 ~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~----~~~~~~~~~~ 325 (419)
.....+.+.+|++|+|+|++. .+..+..+++++.+. +.|+++|+||+|+.+....+.+. +.++.....+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 111234489999999999985 777787778877763 78999999999996532211111 1233333333
Q ss_pred CCCcEEEEeccC-----CCCHHHHHHHHHHHHhhcCCCCCHHHHH
Q psy17089 326 SFAMFNFISAIK-----LNNINSFMESINHVYDSSIIHLSTSRIT 365 (419)
Q Consensus 326 ~~~~~~~~SA~~-----g~gv~~l~~~i~~~~~~~~~~~~~~~l~ 365 (419)
+ ..++.++++. +.|+++|++.|.+.+.+......+..+-
T Consensus 176 g-~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~ 219 (247)
T 3lxw_A 176 G-GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVY 219 (247)
T ss_dssp T-TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHH
T ss_pred C-CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 3 3455555544 5899999999999998755444444333
No 153
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.86 E-value=1.1e-21 Score=180.65 Aligned_cols=172 Identities=25% Similarity=0.359 Sum_probs=118.0
Q ss_pred EEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hh
Q psy17089 55 IDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LD 131 (419)
Q Consensus 55 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~ 131 (419)
-+.||+.. ...+++...+.++|++++|+|++.+....+..+.+++ .++|.++|+||+|+...... .+
T Consensus 4 ~w~PGhm~--------ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~ 73 (282)
T 1puj_A 4 QWFPGHMA--------KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKE 73 (282)
T ss_dssp -----CTT--------HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHH
T ss_pred cCCchHHH--------HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHH
Confidence 35688752 4557888899999999999999988777766777776 48999999999999875433 34
Q ss_pred HH-hcCCCCeEEEeeccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeee
Q psy17089 132 FY-ELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVIT 210 (419)
Q Consensus 132 ~~-~~~~~~~~~vSa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~ 210 (419)
++ ..+. +++++||+++.|++++++.+.+.+.+..... ..+.....+++++++|.||||||||+|+|++...+.+
T Consensus 74 ~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~----~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~ 148 (282)
T 1puj_A 74 HFENQGI-RSLSINSVNGQGLNQIVPASKEILQEKFDRM----RAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKT 148 (282)
T ss_dssp HHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHHHHHHHH----HHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC--
T ss_pred HHHhcCC-cEEEEECCCcccHHHHHHHHHHHHHHHHHHH----HhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeec
Confidence 44 3455 7899999999999999998887665321100 0011123568999999999999999999999987889
Q ss_pred cCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCC
Q psy17089 211 YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 211 ~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 244 (419)
++.||+|++.... .. +..+.+|||||+....
T Consensus 149 ~~~~g~T~~~~~~--~~-~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 149 GDRPGITTSQQWV--KV-GKELELLDTPGILWPK 179 (282)
T ss_dssp ----------CCE--EE-TTTEEEEECCCCCCSC
T ss_pred CCCCCeeeeeEEE--Ee-CCCEEEEECcCcCCCC
Confidence 9999999877432 22 5689999999997765
No 154
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=168.23 Aligned_cols=151 Identities=20% Similarity=0.146 Sum_probs=114.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.. ......++++.+.....+.+++ ..+.+|||||+. ++......++
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 86 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---------RFRTITSSYY 86 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG---------GGCTTHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH---------hhhhhHHHHH
Confidence 589999999999999999999764 2344556778888888888888 468899999987 3334456678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
..+|++++|+|+.+..+... ..+...+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|
T Consensus 87 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 165 (196)
T 3tkl_A 87 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLETSAKNATN 165 (196)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEEECTTTCTT
T ss_pred hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-cEEEEeCCCCCC
Confidence 99999999999886432221 233333333 27899999999999876654 2222 3454 899999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++|+.|.+.+.+
T Consensus 166 v~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 166 VEQSFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 155
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.86 E-value=4.8e-21 Score=166.33 Aligned_cols=150 Identities=18% Similarity=0.123 Sum_probs=109.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+|+|.+|||||||+|+|++... ...+ ..|.......+...+..+.+|||||+. ++......++.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~ 90 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQF--NEDM-IPTVGFNMRKITKGNVTIKLWDIGGQP---------RFRSMWERYCRG 90 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CCSC-CCCCSEEEEEEEETTEEEEEEEECCSH---------HHHTTHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCC--CCcc-CCCCceeEEEEEeCCEEEEEEECCCCH---------hHHHHHHHHHcc
Confidence 4899999999999999999997642 2222 223334445677888999999999986 555566777899
Q ss_pred CCEEEEEEeCCCCCCH--hHHHHHHHHHh---cCCCEEEEEeccCCCCCCcch---hHHh-----cCCCCeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSISL---DFYE-----LGIGNPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~---~~~~-----~~~~~~~~vSa~~~~ 149 (419)
+|++++|+|+.+..+. ...++...++. .+.|+++|+||+|+....... +... .....++++||++|.
T Consensus 91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 170 (188)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence 9999999998764332 22444455443 578999999999998754321 1111 111257999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|+++++++|.+.+..
T Consensus 171 gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 171 NIDITLQWLIQHSKS 185 (188)
T ss_dssp THHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
No 156
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.86 E-value=6.7e-22 Score=174.22 Aligned_cols=160 Identities=19% Similarity=0.149 Sum_probs=81.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCcc-ceeeeEeeEEeC----eeEEEEeCCCCCCCCcchHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTT-RDSIKSLFEYNN----KKYILIDTAGIRRRNKTFEVIEKFS 254 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~----~~~~liDtpG~~~~~~~~~~~e~~~ 254 (419)
...++|+++|.+|||||||+++|++........+.+++ .+.....+.+++ ..+.+|||||+ +.+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~ 87 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS----------DLYK 87 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT----------HHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc----------HHHH
Confidence 35689999999999999999999987322333444443 355556666664 47889999999 4443
Q ss_pred HHHHHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH------cCCcEEEEEEcccCCC-hhhH-HHHHHHHHHHcCCC
Q psy17089 255 VIKTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE------SGRSLIVCVNKWDSII-HNQR-KIIKNNIKKKLNFL 325 (419)
Q Consensus 255 ~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~------~~~~~iiv~NK~Dl~~-~~~~-~~~~~~~~~~~~~~ 325 (419)
. ....+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+ .... .+....+.+.+
T Consensus 88 ~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~--- 163 (208)
T 2yc2_C 88 E-QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN--- 163 (208)
T ss_dssp H-HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT---
T ss_pred H-HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc---
Confidence 2 233678899999999999987665554 45555554 4789999999999975 2211 11112222222
Q ss_pred CCCcEEEEeccC-CCCHHHHHHHHHHHHhh
Q psy17089 326 SFAMFNFISAIK-LNNINSFMESINHVYDS 354 (419)
Q Consensus 326 ~~~~~~~~SA~~-g~gv~~l~~~i~~~~~~ 354 (419)
+++++++||++ |.|++++|+.|.+.+..
T Consensus 164 -~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 164 -TLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -TCEEEECCC-------CHHHHHHHHHHHH
T ss_pred -CCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 26899999999 99999999999987754
No 157
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.86 E-value=4.3e-21 Score=164.57 Aligned_cols=152 Identities=18% Similarity=0.124 Sum_probs=109.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
++|+++|++|||||||+|+|++... .....++++.+.....+.+++. .+.+|||||+. ++......++
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 77 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE---------RFRSLRTPFY 77 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCG---------GGHHHHGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch---------hhhhhHHHHH
Confidence 5899999999999999999997642 2334456666666777778874 78899999987 3445556778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh-------cCCCEEEEEeccCCCCCCcc----hhHHh-cCCCCeEEEeecc
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK-------SGQPIVLVINKSENINSSIS----LDFYE-LGIGNPHIISALY 147 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~~----~~~~~-~~~~~~~~vSa~~ 147 (419)
.++|++++|+|..++.+... ..+...+.. .+.|+++|+||+|+...... .++.. ....+++++||++
T Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (177)
T 1wms_A 78 RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKD 157 (177)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTT
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 89999999999886433222 222233322 46799999999999744332 23333 3444899999999
Q ss_pred CCCHHHHHHHHHHhcCC
Q psy17089 148 GNGIKNFLENILTIELP 164 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~ 164 (419)
|.|++++++.+.+.+.+
T Consensus 158 ~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 158 ATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887654
No 158
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.86 E-value=2.9e-22 Score=187.17 Aligned_cols=214 Identities=15% Similarity=0.197 Sum_probs=135.7
Q ss_pred HHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCcee-----eecCCCC----------
Q psy17089 151 IKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRV-----ITYDTPG---------- 215 (419)
Q Consensus 151 v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~-----~~~~~~~---------- 215 (419)
+-++++.+.+.+..... ......++|+++|.+|||||||+|+|++.... .++..|+
T Consensus 4 ~~~~~~~l~~~l~~~~~---------~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~ 74 (299)
T 2aka_B 4 LIPLVNRLQDAFSAIGQ---------NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTE 74 (299)
T ss_dssp HHHHHHHHHHHHTTSCC---------CTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSC
T ss_pred HHHHHHHHHHHHHhcCC---------CCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcc
Confidence 44566666655554321 01135679999999999999999999998654 3334443
Q ss_pred ------------ccceeee-----------------------EeeEE-eCeeEEEEeCCCCCCCCc--chHHHHHHHHHH
Q psy17089 216 ------------TTRDSIK-----------------------SLFEY-NNKKYILIDTAGIRRRNK--TFEVIEKFSVIK 257 (419)
Q Consensus 216 ------------~t~~~~~-----------------------~~~~~-~~~~~~liDtpG~~~~~~--~~~~~e~~~~~~ 257 (419)
+|.+... ..+.. ++..+.+|||||+..... ..+..+......
T Consensus 75 ~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~ 154 (299)
T 2aka_B 75 YAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM 154 (299)
T ss_dssp EEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHH
T ss_pred cchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHH
Confidence 3332100 00111 136899999999965321 011122222344
Q ss_pred HHHHHhhcCEEE-EEecCCCCCCHHHH-HHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCC--CCCcEEEE
Q psy17089 258 TLKSILEANVVI-LLLDAQQNISAQDI-NIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL--SFAMFNFI 333 (419)
Q Consensus 258 ~~~~~~~ad~~i-~v~d~~~~~~~~~~-~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 333 (419)
...+++.++.++ +|+|++++.+.++. .+++.+...+.|+++|+||+|+.+.... ..+.+...+... ++.+++++
T Consensus 155 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~ 232 (299)
T 2aka_B 155 LMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNR 232 (299)
T ss_dssp HHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCC
T ss_pred HHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEECC
Confidence 557888888776 79999987766664 5677776678999999999999764321 111222222121 23578999
Q ss_pred eccCCCCHHHHHHHHHHHHh---------hcCCCCCHHHHHHHHHHHHHcC
Q psy17089 334 SAIKLNNINSFMESINHVYD---------SSIIHLSTSRITRALISAIKNH 375 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~---------~~~~~~~~~~l~~~l~~~~~~~ 375 (419)
||++|.|++++++.+.+..+ ....+..+..+++++++.+..+
T Consensus 233 SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~ 283 (299)
T 2aka_B 233 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNH 283 (299)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHH
T ss_pred ChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHH
Confidence 99999999999999877422 2234556688888888776543
No 159
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=167.50 Aligned_cols=150 Identities=19% Similarity=0.121 Sum_probs=108.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|.+|||||||+|+|++... .....++++.+.....+.+++. .+.+|||||+. ++......++
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 96 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTF-CEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE---------RFNSITSAYY 96 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSG---------GGHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH---------HHHHHHHHHh
Confidence 4899999999999999999997642 2334456667777777888774 67899999987 4445567788
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHHhc-CCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFYEL-GIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~~~-~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..+.+.++. .+.|+++|+||+|+...+.. .++... ....++++||++|.|
T Consensus 97 ~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 97 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 99999999999987443332 233344443 37899999999999765443 223322 234789999999999
Q ss_pred HHHHHHHHHHhc
Q psy17089 151 IKNFLENILTIE 162 (419)
Q Consensus 151 v~~l~~~i~~~~ 162 (419)
++++++.|.+.+
T Consensus 177 i~~l~~~l~~~i 188 (192)
T 2il1_A 177 VDEIFLKLVDDI 188 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 160
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.86 E-value=2.2e-21 Score=164.57 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=91.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
..||+++|++|||||||+|+|++.......+.++++.+ ....+++. .+.+|||||+. .+......+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 69 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQD---------GGRWLPGHC 69 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCc---------cchhhhhhh
Confidence 36899999999999999999998654444444454442 34455554 56799999987 444555667
Q ss_pred HHhCCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~ 148 (419)
+..+|++++|+|..++.+... .++....+. .+.|+++|+||+|+...+.. ..+. ..+. +++++||++|
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (166)
T 3q72_A 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC-KFIETSAALH 148 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred hhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC-cEEEeccCCC
Confidence 899999999999886432222 233333222 37899999999999876554 1222 3344 7899999999
Q ss_pred CCHHHHHHHHHHhc
Q psy17089 149 NGIKNFLENILTIE 162 (419)
Q Consensus 149 ~~v~~l~~~i~~~~ 162 (419)
.|++++++.+.+.+
T Consensus 149 ~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 149 HNVQALFEGVVRQI 162 (166)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 161
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.86 E-value=3.4e-22 Score=178.22 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=113.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhC-CceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLG-ENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
...+||+++|.+|||||||+|+|+. .......+..|++.......+...+..+.+|||||+...... .
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 81 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL-----------R 81 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC-----------C
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH-----------H
Confidence 4679999999999999999999653 323344566676666555444444567889999998554421 1
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
..+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+........ .+... .+++++++||
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~Sa 156 (221)
T 3gj0_A 82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSI-VFHRK----KNLQYYDISA 156 (221)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGC-CHHHH----HTCEEEECBG
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHH-HHHHH----cCCEEEEEeC
Confidence 2577899999999999987655554 34444444 389999999999997543211111 11111 1368999999
Q ss_pred cCCCCHHHHHHHHHHHHhhc
Q psy17089 336 IKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~ 355 (419)
++|.|++++|+.+.+.+...
T Consensus 157 ~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 157 KSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp GGTBTTTHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999987654
No 162
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.86 E-value=5.8e-21 Score=164.80 Aligned_cols=149 Identities=18% Similarity=0.252 Sum_probs=107.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+++|++|||||||+++|.+.......+. .......+.+++..+.+|||||++ .+......++.+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t----~g~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~~ 83 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPT----QGFNIKSVQSQGFKLNVWDIGGQR---------KIRPYWRSYFEN 83 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEE----TTEEEEEEEETTEEEEEEECSSCG---------GGHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCc----CCeEEEEEEECCEEEEEEECCCCH---------HHHHHHHHHhCC
Confidence 5899999999999999999998643322222 223445677789999999999987 344556678899
Q ss_pred CCEEEEEEeCCCCCCHh--HHHHHHHHHh---cCCCEEEEEeccCCCCCCcch---hHHhc-----CCCCeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLVEQ--DKLITNFLRK---SGQPIVLVINKSENINSSISL---DFYEL-----GIGNPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~--~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~---~~~~~-----~~~~~~~vSa~~~~ 149 (419)
+|++++|+|+.+..+.. ..++..+++. .+.|+++|+||+|+....... +.... ...+++++||++|.
T Consensus 84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 99999999988643322 2344444432 478999999999998765431 11111 11257999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++++++.+.+.+
T Consensus 164 gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 164 GVQDGMNWVCKNVNA 178 (181)
T ss_dssp THHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
No 163
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.86 E-value=7.7e-21 Score=181.66 Aligned_cols=181 Identities=27% Similarity=0.284 Sum_probs=130.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcch-HHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIKT 258 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~e~~~~~~~ 258 (419)
...++|+++|.+|||||||+|+|++.. ..++..+++|.+.....+...+..+.+|||||+.+..... ...+. ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~---~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEK---QAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHH---HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHH---HHH
Confidence 366899999999999999999999886 4566788888888777777778899999999997653211 11121 112
Q ss_pred HHHHhhcCEEEEEecCCCCC--CHHH-HHHHHHHHH--cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNI--SAQD-INIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~--~~~~-~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
......+|++++|+|+++.. +..+ ..++..+.. .+.|+++|+||+|+..........+... ..+.+++++
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~i 315 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKI 315 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEEC
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEE
Confidence 23345699999999988754 4444 355555554 2899999999999987654332222221 124689999
Q ss_pred eccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy17089 334 SAIKLNNINSFMESINHVYDSSIIHLSTSRITRALI 369 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~ 369 (419)
||++|.|++++++.+.+.+.....++..+.++++++
T Consensus 316 SA~~g~gi~~l~~~i~~~l~~~~~~~~~~~~~~~l~ 351 (357)
T 2e87_A 316 SALKGTGIDLVKEEIIKTLRPLAEKVAREKIERELR 351 (357)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCCcCHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence 999999999999999999876655554555555544
No 164
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=3.2e-21 Score=163.34 Aligned_cols=148 Identities=20% Similarity=0.182 Sum_probs=107.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++.. +...+.+++.+.....+.+++.. +.+|||||+.. +......++
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~ 72 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT--FIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ---------FASMRDLYI 72 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC---------CHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC--CcccCCCCcceeEEEEEEECCEEEEEEEEECCCchh---------hHHHHHHHh
Confidence 589999999999999999999754 23444455555556667777754 78999999873 334455678
Q ss_pred HhCCEEEEEEeCCCCCCHh--HHHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQ--DKLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~--~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.++|++++|+|..+..+.. ..++...++. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.
T Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 151 (167)
T 1kao_A 73 KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC-PFMETSAKSKT 151 (167)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-CEEEECTTCHH
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCC-CEEEecCCCCc
Confidence 8999999999988643222 2233333332 47899999999998765443 2222 3455 78999999999
Q ss_pred CHHHHHHHHHHhc
Q psy17089 150 GIKNFLENILTIE 162 (419)
Q Consensus 150 ~v~~l~~~i~~~~ 162 (419)
|++++++.|.+.+
T Consensus 152 gi~~l~~~l~~~~ 164 (167)
T 1kao_A 152 MVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 165
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=166.12 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=101.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
++|+++|++|||||||+|+|++........ +++.+.....+.+++. .+.+|||||+.... .......++
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~ 75 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHE--QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD-------KSWSQESCL 75 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CC--CSSSSEEEEEEEETTEEEEEEEECCC--------------CHHHHHTT
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccC--ccccceeEEEEEECCEEEEEEEEecCCCCccc-------hhhhHHhhc
Confidence 589999999999999999999875433323 3333444556677775 67799999987321 222334567
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
+.+|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...+.. ..+. ..+. +++++||++|.
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~g~ 154 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDC-KFIETSATLQH 154 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTS-EEEECBTTTTB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 88999999999886433222 233333443 27899999999999876544 1222 3444 78999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++++.|.+.+..
T Consensus 155 gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 155 NVAELFEGVVRQLRL 169 (175)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887643
No 166
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.86 E-value=1.7e-21 Score=167.29 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=111.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC---eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK---KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.+|+|+|++|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||+... ......+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~---------~~~~~~~ 76 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIG---------GKMLDKY 76 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTT---------CTTHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccc---------cchhhHH
Confidence 58999999999999999999975421 22234556677777888876 68899999998733 2344556
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh-----cCCC-EEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeec
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK-----SGQP-IVLVINKSENINSSIS-----LDFY-ELGIGNPHIISAL 146 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~-----~~~p-~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~ 146 (419)
+.++|++++|+|+.++.+... ..+...+.. .+.| +++|+||+|+...+.. .++. ..+. +++++||+
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGF-SSHFVSAK 155 (178)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEEECTT
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCC-cEEEEeCC
Confidence 889999999999986433222 233344433 2566 7999999999764433 2232 3455 78999999
Q ss_pred cCCCHHHHHHHHHHhcCCc
Q psy17089 147 YGNGIKNFLENILTIELPY 165 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~~~~ 165 (419)
+|.|++++++.|.+.+.+.
T Consensus 156 ~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 156 TGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TCTTHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999887764
No 167
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=4.2e-21 Score=176.84 Aligned_cols=171 Identities=16% Similarity=0.181 Sum_probs=108.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecC-------CCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcc---hH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYD-------TPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKT---FE 248 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~---~~ 248 (419)
..++|+++|.+|+|||||+|+|++.+...... .++++.+.....+..++. .+.+|||||+.+.... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 45899999999999999999999887654432 344555555555555554 8899999999554221 22
Q ss_pred HHHHHHHHHHHHHHhh-------------cCEEEEEecCCC-CCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHH
Q psy17089 249 VIEKFSVIKTLKSILE-------------ANVVILLLDAQQ-NISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKII 314 (419)
Q Consensus 249 ~~e~~~~~~~~~~~~~-------------ad~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~ 314 (419)
.+-.|...+...++.. +|+++++++.+. +....+..+++.+.. ++|+++|+||+|+.........
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~ 165 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQF 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHH
Confidence 2222322333345554 788999997665 778888888888887 9999999999999877666555
Q ss_pred HHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 315 KNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
.+.+.+.+... +++++++||+++.|++++++.|.+.++
T Consensus 166 ~~~i~~~l~~~-~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 166 KKQIMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHT-TCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHc-CCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 55555554432 367889999999999999998887654
No 168
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.85 E-value=4.9e-21 Score=168.13 Aligned_cols=152 Identities=20% Similarity=0.070 Sum_probs=108.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||++ ++......++
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 99 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAF-SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE---------RFRTITQSYY 99 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCG---------GGHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH---------hHHHHHHHHH
Confidence 5899999999999999999997642 122334455666677778887 478899999987 4445667788
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
+++|++++|+|+.+..+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+...++++||++|.|
T Consensus 100 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 100 RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN 179 (201)
T ss_dssp TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 99999999999876433221 233333333 46899999999999764433 2333 34544789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.+.+
T Consensus 180 i~~l~~~l~~~i~~ 193 (201)
T 2hup_A 180 VEEAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 169
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.85 E-value=7.6e-21 Score=163.61 Aligned_cols=152 Identities=19% Similarity=0.118 Sum_probs=109.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||+. ++......++
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 82 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFV-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---------RYHSLAPMYY 82 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCT-TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG---------GGGGGTHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC-CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh---------hhhhhhHHHh
Confidence 48999999999999999999976422 22334555555566666765 478899999987 3334455678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 161 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGL-FFMETSAKTATN 161 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCSSSCTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCC-EEEEEECCCCCC
Confidence 89999999999886433222 333333333 27789999999999765543 2233 3444 789999999999
Q ss_pred HHHHHHHHHHhcCCc
Q psy17089 151 IKNFLENILTIELPY 165 (419)
Q Consensus 151 v~~l~~~i~~~~~~~ 165 (419)
++++++.|.+.+.+.
T Consensus 162 i~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 162 VKEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887764
No 170
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=5.9e-21 Score=165.51 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=107.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|.+|||||||+|+|++.... ...+ |.+.....+.+++..+.+|||||++ ++......++.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~~~ 83 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV--HTSP--TIGSNVEEIVINNTRFLMWDIGGQE---------SLRSSWNTYYTN 83 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE--EEEC--CSCSSCEEEEETTEEEEEEECCC-------------CGGGHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cCcC--CCccceEEEEECCEEEEEEECCCCH---------hHHHHHHHHhcC
Confidence 58999999999999999999976432 2222 3334455677889999999999997 333444567899
Q ss_pred CCEEEEEEeCCCCCC--HhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHHh------cCCCCeEEEeeccC
Q psy17089 83 SDIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYE------LGIGNPHIISALYG 148 (419)
Q Consensus 83 ~d~il~v~d~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~~------~~~~~~~~vSa~~~ 148 (419)
+|++++|+|++++.+ ....++...++. .+.|+++|+||+|+...... .+... .+. .++++||++|
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g 162 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW-HIQACCALTG 162 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE-EEEECBTTTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCc-EEEEccCCCC
Confidence 999999999987633 333445555543 57899999999999764332 22221 122 6799999999
Q ss_pred CCHHHHHHHHHHhcCCcc
Q psy17089 149 NGIKNFLENILTIELPYK 166 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~~~ 166 (419)
.|+++++++|.+.+....
T Consensus 163 ~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 163 EGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp BTHHHHHHHHHHHHCC--
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 999999999999887654
No 171
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=168.01 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=112.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
++|+|+|++|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||.... ......++
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 79 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF---------RTITSTYY 79 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC---------SSCCGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhh---------hhhHHHHh
Confidence 68999999999999999999986432 44566777888888888888 57889999998632 22334567
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCCH
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNGI 151 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~v 151 (419)
.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...+.. ..+. ..+. +++++||++|.|+
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 80 RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGI-QLFETSAKENVNV 158 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-CEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCC-eEEEEECCCCCCH
Confidence 89999999999987432222 222333333 35899999999998876544 2222 3455 8999999999999
Q ss_pred HHHHHHHHHhcCCc
Q psy17089 152 KNFLENILTIELPY 165 (419)
Q Consensus 152 ~~l~~~i~~~~~~~ 165 (419)
+++++.|.+.+.+.
T Consensus 159 ~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 159 EEMFNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876554
No 172
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.85 E-value=4.4e-22 Score=172.21 Aligned_cols=161 Identities=15% Similarity=0.133 Sum_probs=107.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+++|.+... ...+..+........+..++ ..+.+|||||+..+...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 71 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------- 71 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT-----------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence 3668999999999999999999997642 22333333333333444444 46788999998544311
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhH-HH---------HHHHHHHHcC
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQR-KI---------IKNNIKKKLN 323 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~-~~---------~~~~~~~~~~ 323 (419)
...+++.+|++++|+|++++.+..+. .|+..+.. .+.|+++|+||+|+.+.... .+ ..++..+...
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 151 (184)
T 1m7b_A 72 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK 151 (184)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred HHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH
Confidence 12467889999999999987666654 34455554 47999999999999642110 00 0011111111
Q ss_pred CCCCCcEEEEecc-CCCCHHHHHHHHHHHHh
Q psy17089 324 FLSFAMFNFISAI-KLNNINSFMESINHVYD 353 (419)
Q Consensus 324 ~~~~~~~~~~SA~-~g~gv~~l~~~i~~~~~ 353 (419)
..+..+++++||+ +|.|++++|+.+.+.+.
T Consensus 152 ~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 152 QIGAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 1223689999999 68999999999988764
No 173
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.85 E-value=2.2e-21 Score=165.32 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=110.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+++|++|||||||+|+|++... ....+ |.......+.+++..+.+|||||+.. +......++.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~---------~~~~~~~~~~~ 74 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEV--VTTIP--TIGFNVETVTYKNLKFQVWDLGGLTS---------IRPYWRCYYSN 74 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--CCCCC--CSSEEEEEEEETTEEEEEEEECCCGG---------GGGGGGGGCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCcCC--cCccceEEEEECCEEEEEEECCCChh---------hhHHHHHHhcc
Confidence 5899999999999999999987542 22222 44556677888899999999999873 22334556789
Q ss_pred CCEEEEEEeCCCCCC--HhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHH------hcCCCCeEEEeeccC
Q psy17089 83 SDIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFY------ELGIGNPHIISALYG 148 (419)
Q Consensus 83 ~d~il~v~d~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~------~~~~~~~~~vSa~~~ 148 (419)
+|++++|+|+.++.+ ....++...+.. .+.|+++|+||+|+...... .+.. ..+. +++++||++|
T Consensus 75 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 153 (171)
T 1upt_A 75 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW-QIFKTSATKG 153 (171)
T ss_dssp CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE-EEEECCTTTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce-EEEECcCCCC
Confidence 999999999887633 333555555543 47899999999999876433 1111 1122 6899999999
Q ss_pred CCHHHHHHHHHHhcCC
Q psy17089 149 NGIKNFLENILTIELP 164 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~ 164 (419)
.|++++++.+.+.+.+
T Consensus 154 ~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 154 TGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999987654
No 174
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=7.4e-22 Score=193.51 Aligned_cols=160 Identities=26% Similarity=0.390 Sum_probs=117.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+|+|++|||||||+|+|++...+++.+.+++|++.....+.++|..+.+|||||+.+.. +............++..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~-~~ve~~gi~~~~~~~~~ 303 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS-DQVEKIGVERSRQAANT 303 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------CCCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch-hHHHHHHHHHHhhhhhc
Confidence 47999999999999999999987666788899999999988899999999999999986432 11112223344556789
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcchhHHhc-CCCCeEEEeeccCCCHHHHHHHHHHh
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDFYEL-GIGNPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~-~~~~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
+|++++|+|+.++....+..+.+.+. .+|+++|+||+|+............ ...+++++||++|.|++++++.|.+.
T Consensus 304 aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEI 381 (462)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999988888877777775 4799999999999876544211111 22478999999999999999999987
Q ss_pred cCCc
Q psy17089 162 ELPY 165 (419)
Q Consensus 162 ~~~~ 165 (419)
+...
T Consensus 382 ~~~~ 385 (462)
T 3geh_A 382 VQTG 385 (462)
T ss_dssp HTTS
T ss_pred Hhcc
Confidence 7653
No 175
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.85 E-value=1.1e-20 Score=183.46 Aligned_cols=165 Identities=19% Similarity=0.168 Sum_probs=117.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCcc--------------ceeee-----EeeEEeCeeEEEEeCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTT--------------RDSIK-----SLFEYNNKKYILIDTAGI 240 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t--------------~~~~~-----~~~~~~~~~~~liDtpG~ 240 (419)
.+.++|+++|++|+|||||+|+|++........+...+ .+... .........+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 46689999999999999999999984321110100000 00000 000112368999999998
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCC-CHHHHHHHHHHHHcC-CcEEEEEEcccCCChhhHHHHHHHH
Q psy17089 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-SAQDINIANFIYESG-RSLIVCVNKWDSIIHNQRKIIKNNI 318 (419)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~~~~~~~~~~~~-~~~iiv~NK~Dl~~~~~~~~~~~~~ 318 (419)
. .|. .....++..+|++++|+|++++. ..+..+++..+...+ .|+++|+||+|+.+........+++
T Consensus 86 ~----------~~~-~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i 154 (403)
T 3sjy_A 86 E----------VLM-ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQI 154 (403)
T ss_dssp G----------GGH-HHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred H----------HHH-HHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHH
Confidence 3 332 44557889999999999999987 667777777777666 4899999999998876655555666
Q ss_pred HHHcCCC--CCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 319 KKKLNFL--SFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 319 ~~~~~~~--~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
.+.+... ..++++++||++|.|+++|++.|.+.++..
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 6655433 357899999999999999999999876543
No 176
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.85 E-value=7.3e-21 Score=161.28 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=107.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++.. +...+.+++.+.....+.+++. .+.+|||||+. ++......++
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~~ 73 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE---------DYAAIRDNYF 73 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------CHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc--cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcc---------hhHHHHHHHh
Confidence 589999999999999999999864 3445555555555566677774 67899999987 3445566778
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
..+|++++|+|+.+..+... .++...... .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (168)
T 1u8z_A 74 RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVETSAKTRA 152 (168)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEECCTTTCT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCC-eEEEeCCCCCC
Confidence 99999999999886432221 222222222 37899999999999765443 2222 3454 78999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|++++++.+.+.+.
T Consensus 153 gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 153 NVDKVFFDLMREIR 166 (168)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 177
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=5.4e-21 Score=162.13 Aligned_cols=150 Identities=18% Similarity=0.133 Sum_probs=105.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++.. ....+.+++.+.....+.+++ ..+.+|||||+.... .....++
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~ 72 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT---------AMRDLYM 72 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC--CCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST---------THHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH---------HHHHHHh
Confidence 589999999999999999999753 233444444444444455554 467899999987432 3445667
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.++|++++|+|..++.+... .++....+. .+.|+++|+||+|+...+.. .++. ..+..+++++||++|.
T Consensus 73 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (167)
T 1c1y_A 73 KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKI 152 (167)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCC
Confidence 88999999999886432222 222222222 47899999999999765443 2222 2323478999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|++++++.|.+.+.
T Consensus 153 gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 153 NVNEIFYDLVRQIN 166 (167)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987653
No 178
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.85 E-value=9e-21 Score=165.64 Aligned_cols=152 Identities=17% Similarity=0.135 Sum_probs=111.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|++|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||+.... . .....++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~--~~~~~~~ 94 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG------G--WLRDHCL 94 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG------H--HHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch------h--hhHHHhh
Confidence 58999999999999999999865332 234567778877777888875 55689999997322 1 1334567
Q ss_pred HhCCEEEEEEeCCCCCCH--hHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
+++|++++|+|..+..+. ...|+...... .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.
T Consensus 95 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sa~~~~ 173 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETSAALHH 173 (195)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEEEBTTTTB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCC-EEEEEcCCCCC
Confidence 899999999998864322 22333333322 37899999999999865543 2233 3444 78999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++|+.+.+.+..
T Consensus 174 ~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 174 NTRELFEGAVRQIRL 188 (195)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987654
No 179
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.85 E-value=4.9e-21 Score=165.78 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=110.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|++|||||||+|+|++.. .....+ |.......+.+++..+.+|||||++ ++......++.+
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~---------~~~~~~~~~~~~ 85 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED--VDTISP--TLGFNIKTLEHRGFKLNIWDVGGQK---------SLRSYWRNYFES 85 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC--CSSCCC--CSSEEEEEEEETTEEEEEEEECCSH---------HHHTTGGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCcccc--cCccceEEEEECCEEEEEEECCCCH---------hHHHHHHHHhcC
Confidence 589999999999999999999865 222222 4445566777889999999999996 444555667889
Q ss_pred CCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHHhc-----CCCCeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYEL-----GIGNPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~~~-----~~~~~~~vSa~~~~ 149 (419)
+|++++|+|+.++.+... .++...++. .+.|+++|+||+|+...... .+.... ...+++++||++|.
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (186)
T 1ksh_A 86 TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGE 165 (186)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCC
Confidence 999999999987543322 444444443 47899999999999876443 122111 11267999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++++.+.+.+.+
T Consensus 166 gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 166 DLLPGIDWLLDDISS 180 (186)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
No 180
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=168.36 Aligned_cols=151 Identities=20% Similarity=0.193 Sum_probs=109.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+|+|.+|||||||+|+|++...+.. . ...|.+.....+.+++..+.+|||||++.. ......++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~~~ 90 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQ-N-ILPTIGFSIEKFKSSSLSFTVFDMSGQGRY---------RNLWEHYYKE 90 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCS-S-CCCCSSEEEEEEECSSCEEEEEEECCSTTT---------GGGGGGGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC-C-cCCccceeEEEEEECCEEEEEEECCCCHHH---------HHHHHHHHhc
Confidence 5899999999999999999998642222 2 234555667778888899999999998733 2334556789
Q ss_pred CCEEEEEEeCCCCC--CHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCcc---hhHHh---cC--CCCeEEEeecc
Q psy17089 83 SDIIIFIVDGRQGL--VEQDKLITNFLRK-----SGQPIVLVINKSENINSSIS---LDFYE---LG--IGNPHIISALY 147 (419)
Q Consensus 83 ~d~il~v~d~~~~~--~~~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~---~~~~~---~~--~~~~~~vSa~~ 147 (419)
+|++++|+|+.+.. .....++..++.. .+.|+++|+||+|+...... .++.. .. ...++++||++
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999998642 2223455555544 47899999999999765433 22221 11 12679999999
Q ss_pred CCCHHHHHHHHHHhcCC
Q psy17089 148 GNGIKNFLENILTIELP 164 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~ 164 (419)
|.|++++++.|.+.+.+
T Consensus 171 ~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TBTHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999987643
No 181
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.85 E-value=6.9e-21 Score=175.14 Aligned_cols=156 Identities=28% Similarity=0.374 Sum_probs=118.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+++|++|||||||+|+|+|.. ..++..+++|.+.....+.+++..+.+|||||+.........+.+...+ ....+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~ 81 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNF-ILDGN 81 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHH-HHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHh-hhccC
Confidence 789999999999999999999875 4677889999999999999999999999999998654222222221111 12368
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHhcC-CCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHHHHHH
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSG-QPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLE 156 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~~~-~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~~l~~ 156 (419)
+|++++|+|+++. .....+...+...+ .|+++|+||+|+...... ..+. .++. +++++||++|.|++++++
T Consensus 82 ~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~-~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 82 ADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGV-PVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSS-CEEECBGGGTBTHHHHHH
T ss_pred CcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCC-cEEEEEeCCCCCHHHHHH
Confidence 9999999999863 33344444455556 999999999997654332 2222 4555 899999999999999999
Q ss_pred HHHHhcC
Q psy17089 157 NILTIEL 163 (419)
Q Consensus 157 ~i~~~~~ 163 (419)
.+.+.+.
T Consensus 159 ~i~~~~~ 165 (271)
T 3k53_A 159 MIALMAE 165 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987654
No 182
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=7.3e-21 Score=167.93 Aligned_cols=152 Identities=21% Similarity=0.184 Sum_probs=108.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|++|||||||+|+|++....+...+++++.+.....+.++|.. +.+|||+|+... .......++
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~--------~~~l~~~~~ 109 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE--------NEWLHDHCM 109 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH--------HHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch--------hhhHHHHHH
Confidence 5899999999999999999998665556666677777777778888865 568999998621 112233456
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc--h---hHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS--L---DFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~--~---~~~-~~~~~~~~~vSa~~~~ 149 (419)
+.++++++|+|.++..+... ..+...+.+ .++|+++|+||+|+...+.+ . .+. ..+. +++++||++|.
T Consensus 110 ~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~-~~~e~SAk~g~ 188 (211)
T 2g3y_A 110 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-KFIETSAAVQH 188 (211)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 78999999999876433222 223333332 37899999999999765443 1 221 3444 78999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|++++|+.+.+.+.
T Consensus 189 ~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 189 NVKELFEGIVRQVR 202 (211)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988663
No 183
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.85 E-value=9.8e-21 Score=162.44 Aligned_cols=149 Identities=17% Similarity=0.116 Sum_probs=108.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCC-CCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANY-PGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
++|+|+|.+|||||||+|+|++... ...+ ++++.+.....+.+++ ..+.+|||||+. ++......+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~ 84 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE---------RFRAVTRSY 84 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG---------GTCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh---------HhhhhHHHH
Confidence 5899999999999999999997642 2322 3344455555666666 467899999987 333456677
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
+.++|++++|+|+.+..+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-LFLEASAKTGE 163 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCT
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 899999999999886533222 223333332 47899999999999765443 2333 3444 78999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|++++++.+.+.+.
T Consensus 164 gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 164 NVEDAFLEAAKKIY 177 (179)
T ss_dssp THHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987664
No 184
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=1.6e-20 Score=179.49 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=122.3
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
+|+++|++|+|||||+++|+ ..|+|.+.....+..++..+.+|||||+.++. .....+++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~-----------~~~~~~~~ 82 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL-----------KSLITALN 82 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH-----------HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH-----------HHHHHHHH
Confidence 99999999999999999998 23566666666677778899999999996543 33446779
Q ss_pred hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcE-EEEEE-cccCCChhhHHHHHHHHHHHcCCC--CCCcEEE--EeccC
Q psy17089 264 EANVVILLLDAQQNISAQDINIANFIYESGRSL-IVCVN-KWDSIIHNQRKIIKNNIKKKLNFL--SFAMFNF--ISAIK 337 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~N-K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~SA~~ 337 (419)
.+|++++|+| +.+...+..+++..+...++|. ++|+| |+|+ +........+++.+.+... ...++++ +||++
T Consensus 83 ~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 83 ISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp TCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred HCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 9999999999 8888888888888888889998 99999 9999 6554444556666666544 3479999 99999
Q ss_pred ---CCCHHHHHHHHHHHHhh
Q psy17089 338 ---LNNINSFMESINHVYDS 354 (419)
Q Consensus 338 ---g~gv~~l~~~i~~~~~~ 354 (419)
|.|+++|++.|.+.++.
T Consensus 161 ~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 161 KNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp SSTTTTHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhhccc
Confidence 99999999999988765
No 185
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=4.3e-21 Score=164.68 Aligned_cols=151 Identities=21% Similarity=0.166 Sum_probs=110.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++... .....++++.+.....+.+++. .+.+|||||+.. +......++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~---------~~~~~~~~~ 84 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI 84 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG---------GGGGSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH---------HHHHHHHHh
Confidence 4899999999999999999997542 2334566777777778888874 788999999863 333445678
Q ss_pred HhCCEEEEEEeCCCCCCHh--HHHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQ--DKLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~--~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+.. ..++...... .+.|+++|+||+|+...+.. ..+. ..+. +++++||++|.|
T Consensus 85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 163 (179)
T 2y8e_A 85 RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN 163 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEEEBTTTTBS
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 8999999999987642221 1222222222 47899999999999765543 2222 3454 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.++.
T Consensus 164 i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 164 VKQLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987764
No 186
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=6.8e-21 Score=161.92 Aligned_cols=151 Identities=20% Similarity=0.144 Sum_probs=108.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++... .....++.+.+.....+.+++. .+.+|||||+. ++......++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~~~ 73 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDF-AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE---------RFASLAPXYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG---------GGGGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh---------hhhhhhhhhh
Confidence 5899999999999999999997642 1233455555555666777664 78899999987 2334456678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHH-h--cCCCEEEEEeccCCCCC---Ccc-----hhHH-hcCCCCeEEEeecc
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLR-K--SGQPIVLVINKSENINS---SIS-----LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~-~--~~~p~ilv~NK~Dl~~~---~~~-----~~~~-~~~~~~~~~vSa~~ 147 (419)
.++|++++|+|+.++.+... ..+...+. . .+.|+++|+||+|+... +.. .++. ..+. +++++||++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 99999999999986433222 22222332 2 37899999999999765 222 1222 3454 789999999
Q ss_pred CCCHHHHHHHHHHhcCC
Q psy17089 148 GNGIKNFLENILTIELP 164 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~ 164 (419)
|.|++++++.|.+.+++
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIPL 169 (170)
T ss_dssp CTTHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987653
No 187
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=1.3e-20 Score=163.33 Aligned_cols=151 Identities=23% Similarity=0.243 Sum_probs=111.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++.. +...+++++.+.......+++.. +.+|||||++ ++......++
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 73 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE---------EYSAMRDQYM 73 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC------------CTTHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcH---------HHHHHHHHHH
Confidence 589999999999999999999754 45566677777777777888865 5679999987 3334555678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
..+|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 152 (189)
T 4dsu_A 74 RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGI-PFIETSAKTRQG 152 (189)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTC-CEEECCTTTCTT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 89999999999886432222 222222222 47899999999999865443 2222 3454 799999999999
Q ss_pred HHHHHHHHHHhcCCc
Q psy17089 151 IKNFLENILTIELPY 165 (419)
Q Consensus 151 v~~l~~~i~~~~~~~ 165 (419)
++++++.+.+.+...
T Consensus 153 i~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 153 VDDAFYTLVREIRKH 167 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999877654
No 188
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=2.6e-20 Score=168.06 Aligned_cols=179 Identities=15% Similarity=0.194 Sum_probs=112.8
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCC--CccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHH-HHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP--GTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVI-EKFSVI 256 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-e~~~~~ 256 (419)
...++|+++|.+|||||||+|+|++... ..+..+ ++|.+.....+.+++..+.+|||||+.+........ +.+. .
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~-~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEII-R 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHH-H
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHH-H
Confidence 4679999999999999999999999865 333444 678888888888889999999999997654322222 2222 2
Q ss_pred HHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHH-----cCCcEEEEEEcccCCChhhHHHHH----HHHHHHcCCCCC
Q psy17089 257 KTLKSILEANVVILLLDAQQNISAQDINIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIK----NNIKKKLNFLSF 327 (419)
Q Consensus 257 ~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~----~~~~~~~~~~~~ 327 (419)
....+++.+|++|+|+|++. .+..+..++..+.+ ...|+++|+||+|+.......++. +.+......++
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~- 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG- 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS-
T ss_pred HHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC-
Confidence 33345567899999999985 44455555555532 457999999999997654433111 12222222222
Q ss_pred CcEEEEeccCC-----CCHHHHHHHHHHHHhhcCCCCCHH
Q psy17089 328 AMFNFISAIKL-----NNINSFMESINHVYDSSIIHLSTS 362 (419)
Q Consensus 328 ~~~~~~SA~~g-----~gv~~l~~~i~~~~~~~~~~~~~~ 362 (419)
..++.+++..+ .++.+|+..+.+.+.+......+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~ 222 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTN 222 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC--
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcH
Confidence 35677776643 689999999999887755444433
No 189
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.85 E-value=1.1e-20 Score=160.82 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=101.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHH-HHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTK-QTKQ 78 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~-~~~~ 78 (419)
..||+++|++|||||||+|+|++.... ....++.+.+.....+.+++. .+.+|||||+... .. ....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~ 71 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGD-HAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA---------GGWLQDH 71 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-----------------CH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCc-ccccCCCcCCeeeEEEEECCeEEEEEEEECCCcccc---------chhhhhh
Confidence 368999999999999999999976433 223345567777777788874 5669999999732 22 3344
Q ss_pred HHHhCCEEEEEEeCCCCCC--HhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeecc
Q psy17089 79 AIIESDIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~ 147 (419)
++.++|++++|+|..++.+ ....++...... .+.|+++|+||+|+...+.. .++. ..+. +++++||++
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (169)
T 3q85_A 72 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETSAAL 150 (169)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTT
T ss_pred hhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC-cEEEecCcc
Confidence 5778999999999886322 222344444433 27899999999999765544 2222 3455 889999999
Q ss_pred CCCHHHHHHHHHHhc
Q psy17089 148 GNGIKNFLENILTIE 162 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~ 162 (419)
|.|++++++.+.+.+
T Consensus 151 ~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 151 HHNTRELFEGAVRQI 165 (169)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998764
No 190
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.85 E-value=4.4e-21 Score=167.80 Aligned_cols=150 Identities=18% Similarity=0.244 Sum_probs=108.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+|+|.+|||||||+|+|++.....+...+ |.......+...+..+.+|||||++. +......++.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~ 86 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKK---------FRGLWETYYDN 86 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGG---------GGGGGGGGCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHh---------HHHHHHHHHhc
Confidence 68999999999999999999987532212222 33455566778889999999999973 33344566789
Q ss_pred CCEEEEEEeCCCCCC--HhHHHHHHHHHh----------cCCCEEEEEeccCCCCCCcc---hhHH-------hcCCCCe
Q psy17089 83 SDIIIFIVDGRQGLV--EQDKLITNFLRK----------SGQPIVLVINKSENINSSIS---LDFY-------ELGIGNP 140 (419)
Q Consensus 83 ~d~il~v~d~~~~~~--~~~~~~~~~l~~----------~~~p~ilv~NK~Dl~~~~~~---~~~~-------~~~~~~~ 140 (419)
+|++++|+|+.++.+ ....++..+++. .+.|+++|+||+|+...... .+.. ..+. .+
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~ 165 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF-VI 165 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE-EE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee-EE
Confidence 999999999987543 233444444433 28899999999999877443 1111 1223 67
Q ss_pred EEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 141 HIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 141 ~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
+++||++|.|++++++.|.+.+.+
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEeeCCCccCHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 191
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.85 E-value=8e-21 Score=165.54 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=105.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+|+|++|||||||+|+|++... ....| |.+.....+.+.+..+.+|||||++ ++......++.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~~~ 96 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNICFTVWDVGGQD---------KIRPLWRHYFQN 96 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCC--EEEEE--ETTEEEEEEEETTEEEEEEECC--------------CTTHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCc--cccCC--cCceeEEEEEECCEEEEEEECCCCH---------hHHHHHHHHhcc
Confidence 5899999999999999999987642 23223 4445566778889999999999997 333445567899
Q ss_pred CCEEEEEEeCCCCCCH--hHHHHHHHHHh---cCCCEEEEEeccCCCCCCcchhH---Hhc-----CCCCeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSISLDF---YEL-----GIGNPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~---~~~-----~~~~~~~vSa~~~~ 149 (419)
+|++++|+|+.++.+. ...++...+.. .+.|+++|+||+|+.......++ ... ...+++++||++|.
T Consensus 97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 9999999999865322 22344444432 37899999999999775432111 111 11257999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++++.|.+.+.+
T Consensus 177 gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 177 GLYDGLDWLSHELSK 191 (192)
T ss_dssp THHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987653
No 192
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.85 E-value=1e-21 Score=169.55 Aligned_cols=152 Identities=15% Similarity=0.075 Sum_probs=89.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.. ......++++.+.....+.+++ ..+.+|||||+. ++......++
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 78 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAYY 78 (183)
T ss_dssp EEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh---------hhhhhHHHHH
Confidence 589999999999999999999753 2223345566677777778887 678899999987 3444455678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 157 (183)
T 2fu5_C 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFMETSAKANIN 157 (183)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEECCC---CC
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 89999999999987432222 223333333 36899999999999765443 2232 3455 789999999999
Q ss_pred HHHHHHHHHHhcCCc
Q psy17089 151 IKNFLENILTIELPY 165 (419)
Q Consensus 151 v~~l~~~i~~~~~~~ 165 (419)
++++++.|.+.+.+.
T Consensus 158 i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 158 VENAFFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876543
No 193
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.85 E-value=1.3e-20 Score=162.65 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=107.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEE--EEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSF--IIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.. +...+.+++.+.......+++..+ .+|||||++.. ......++
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~~~~ 87 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI--FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF---------SAMREQYM 87 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGG---------CSSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhh---------HHHHHHHH
Confidence 589999999999999999999753 344454555555566777777654 46999998732 23445668
Q ss_pred HhCCEEEEEEeCCCCCCHh--HHHHHHHHH---hcCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeec-cC
Q psy17089 81 IESDIIIFIVDGRQGLVEQ--DKLITNFLR---KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISAL-YG 148 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~--~~~~~~~l~---~~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~-~~ 148 (419)
.++|++++|+|..++.+.. ..++...++ ..+.|+++|+||+|+...+.. .++. ..+. +++++||+ ++
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 166 (183)
T 3kkq_A 88 RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI-PYIETSAKDPP 166 (183)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC-CEEEEBCSSSC
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCC-eEEEeccCCCC
Confidence 8999999999998643222 233222222 257899999999999875544 2222 3454 79999999 99
Q ss_pred CCHHHHHHHHHHhc
Q psy17089 149 NGIKNFLENILTIE 162 (419)
Q Consensus 149 ~~v~~l~~~i~~~~ 162 (419)
.|++++|+.|.+.+
T Consensus 167 ~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 167 LNVDKTFHDLVRVI 180 (183)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 194
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.85 E-value=7.9e-21 Score=161.51 Aligned_cols=151 Identities=18% Similarity=0.102 Sum_probs=106.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++.... ....++.+.+.....+.+++ ..+.+|||||+. ++......++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~~~ 76 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFH-EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE---------RYHSLAPMYY 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG---------GGGGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH---------HhhhhhHHhc
Confidence 58999999999999999999975421 11223344444445555654 578899999987 3334456678
Q ss_pred HhCCEEEEEEeCCCCCCH--hHHHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVE--QDKLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~--~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+. ...++....+. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|
T Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 155 (170)
T 1r2q_A 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL-LFMETSAKTSMN 155 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 999999999998864322 22233333332 36799999999999764433 2222 3344 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
+++++++|.+.+++
T Consensus 156 i~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 156 VNEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987764
No 195
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=4.9e-21 Score=168.11 Aligned_cols=151 Identities=18% Similarity=0.104 Sum_probs=111.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.. ......++++.+.....+.+++. .+.+|||||++ ++......++
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 96 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE---------RFRSITQSYY 96 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG---------GGHHHHGGGS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHHH
Confidence 589999999999999999999764 22334456667777777888874 67899999986 4445566778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
+++|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+...+.. .++. ..+. .++++||++|.|
T Consensus 97 ~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~g~g 175 (201)
T 2ew1_A 97 RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM-YYLETSAKESDN 175 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-CEEECCTTTCTT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 99999999999886433221 223333333 36899999999999765443 2222 3444 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.+.+.+.+
T Consensus 176 v~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 176 VEKLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876653
No 196
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.85 E-value=4e-20 Score=180.03 Aligned_cols=164 Identities=20% Similarity=0.164 Sum_probs=121.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCcee--eecCCCCccceeeeEeeEEe-----------------------CeeEEE
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV--ITYDTPGTTRDSIKSLFEYN-----------------------NKKYIL 234 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~--~~~~~~~~t~~~~~~~~~~~-----------------------~~~~~l 234 (419)
...++|+++|++|+|||||+++|++.... .....+|+|.+.......+. ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 46689999999999999999999975321 22234677776544333221 167899
Q ss_pred EeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCC-CHHHHHHHHHHHHcC-CcEEEEEEcccCCChhhHH
Q psy17089 235 IDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-SAQDINIANFIYESG-RSLIVCVNKWDSIIHNQRK 312 (419)
Q Consensus 235 iDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~~~~~~~~~~~~-~~~iiv~NK~Dl~~~~~~~ 312 (419)
|||||+ +.|. ......+..+|++++|+|++++. ..+..+.+..+...+ .|+++|+||+|+.+.....
T Consensus 88 iDtPGh----------~~f~-~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 88 IDAPGH----------EALM-TTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp EECSSH----------HHHH-HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred EECCCh----------HHHH-HHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHH
Confidence 999998 4553 34456778899999999999886 677777676666655 4799999999998765444
Q ss_pred HHHHHHHHHcCC--CCCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 313 IIKNNIKKKLNF--LSFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 313 ~~~~~~~~~~~~--~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
...+++.+.+.. ....+++++||++|.|+++|++.|.+.++.
T Consensus 157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 444555555543 245799999999999999999999986654
No 197
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=3.6e-21 Score=163.83 Aligned_cols=150 Identities=22% Similarity=0.155 Sum_probs=105.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++... .....++++.+.....+.+++. .+.+|||||+. ++......++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 76 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE---------RFHALGPIYY 76 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CCSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH---------hhhhhHHHHh
Confidence 5899999999999999999997642 2233455566665566666654 67799999987 3344455567
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|
T Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 155 (170)
T 1z08_A 77 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA-KHYHTSAKQNKG 155 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEEBTTTTBS
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEecCCCCCC
Confidence 89999999999886432222 223333332 47899999999999765443 2233 3444 789999999999
Q ss_pred HHHHHHHHHHhcC
Q psy17089 151 IKNFLENILTIEL 163 (419)
Q Consensus 151 v~~l~~~i~~~~~ 163 (419)
++++++.|.+.+.
T Consensus 156 i~~l~~~l~~~~~ 168 (170)
T 1z08_A 156 IEELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 198
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=3.7e-21 Score=168.49 Aligned_cols=147 Identities=20% Similarity=0.221 Sum_probs=101.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|++|||||||+|+|.+.... ... .|.......+.+++..+.+|||||++. +......++++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~~~ 92 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QHV--PTLHPTSEELTIAGMTFTTFDLGGHIQ---------ARRVWKNYLPA 92 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC----------CCCCCSCEEEEETTEEEEEEEECC-------------CCGGGGGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--ccC--CCCCceeEEEEECCEEEEEEECCCcHh---------hHHHHHHHHhc
Confidence 58999999999999999999986422 111 233334567888899999999999873 33344456789
Q ss_pred CCEEEEEEeCCCCCCH--hHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHHhc-----------------CC
Q psy17089 83 SDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYEL-----------------GI 137 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~~~-----------------~~ 137 (419)
+|++++|+|+.++.+. ...++...++. .+.|+++|+||+|+...... .++... ..
T Consensus 93 ~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 93 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCce
Confidence 9999999999865332 23444444432 47899999999999763222 222221 11
Q ss_pred CCeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 138 GNPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 138 ~~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
.+++++||++|.|++++++.|.+.+
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHhc
Confidence 2579999999999999999998653
No 199
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=2.9e-21 Score=168.25 Aligned_cols=152 Identities=18% Similarity=0.130 Sum_probs=105.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC--CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG--KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.... ....++...+.....+.++ +..+.+|||||+.. +......++
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~ 93 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFD-HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER---------FHSLAPMYY 93 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCC-TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGG---------GGGGTHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchh---------hHhhhHHhh
Confidence 58999999999999999999976421 1222233333333334443 46788999999873 334455678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.+..+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|
T Consensus 94 ~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g 172 (192)
T 2fg5_A 94 RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA-IVVETSAKNAIN 172 (192)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTC-EEEECBTTTTBS
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCCCCcC
Confidence 89999999999887433222 223333333 27899999999999754433 2233 3344 789999999999
Q ss_pred HHHHHHHHHHhcCCc
Q psy17089 151 IKNFLENILTIELPY 165 (419)
Q Consensus 151 v~~l~~~i~~~~~~~ 165 (419)
++++++.|.+.+.+.
T Consensus 173 i~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 173 IEELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887754
No 200
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.85 E-value=1.1e-20 Score=164.13 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=108.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHH-HHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMT-KQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~-~~~~~~ 79 (419)
.+|+|+|++|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||++ ++. .....+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 90 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRF-PDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE---------RFRKSMVQHY 90 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH---------HHHTTTHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch---------hhhhhhhHHH
Confidence 5899999999999999999997542 223345566667777777877 478899999986 444 456677
Q ss_pred HHhCCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~ 148 (419)
++++|++++|+|+.+..+... .++....+. .+.|+++|+||+|+...+.. ..+. ..+. .++++||+++
T Consensus 91 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 169 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PLFETSAKNP 169 (189)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CEEECCSSSG
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-EEEEEeCCcC
Confidence 899999999999886432222 222222222 47899999999999765443 2232 3454 7899999999
Q ss_pred ---CCHHHHHHHHHHhcC
Q psy17089 149 ---NGIKNFLENILTIEL 163 (419)
Q Consensus 149 ---~~v~~l~~~i~~~~~ 163 (419)
.|++++++.|.+.++
T Consensus 170 ~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 170 NDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GGGSCHHHHHHHHC----
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 999999999987654
No 201
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.85 E-value=1.2e-20 Score=162.13 Aligned_cols=150 Identities=23% Similarity=0.183 Sum_probs=110.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
++|+++|++|||||||+|+|++.. +...+.+++.+.....+.+++. .+.+|||||+.... .....++
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------~~~~~~~ 78 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG---------AMREQYM 78 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS---------CCHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhH---------HHHHHHH
Confidence 589999999999999999999863 4555666666655567777774 67799999987332 3344567
Q ss_pred HhCCEEEEEEeCCCCCCH--hHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.++|++++|+|..+..+. ...++...++. .+.|+++|+||+|+...+.. ..+. ..+. .++++||++|.
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 157 (181)
T 2fn4_A 79 RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV-AYFEASAKLRL 157 (181)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECBTTTTB
T ss_pred hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEecCCCCC
Confidence 889999999998863222 22333333332 47899999999999765443 2222 3344 78999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++++.|.+.+.+
T Consensus 158 gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 158 NVDEAFEQLVRAVRK 172 (181)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999877643
No 202
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.85 E-value=3.9e-21 Score=167.68 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=111.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++.. +...+.+++.+.......+++.. +.+|||||++ ++......++
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 92 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE--IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE---------EYDRLRPLSY 92 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG---------GGTTTGGGGC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC--CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH---------HHHHHhHhhc
Confidence 489999999999999999999864 34455555555555566777754 4899999987 3334445578
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHhc--CCCEEEEEeccCCCCCC--cc-----hhHH-hcCCCCeEEEeeccC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINSS--IS-----LDFY-ELGIGNPHIISALYG 148 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~Dl~~~~--~~-----~~~~-~~~~~~~~~vSa~~~ 148 (419)
.++|++++|+|+.++.+... ..+...++.. +.|+++|+||+|+.... .. .++. ..+...++++||++|
T Consensus 93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 89999999999987543333 3445555543 68999999999997542 22 2222 456645999999999
Q ss_pred CCHHHHHHHHHHhcCCc
Q psy17089 149 NGIKNFLENILTIELPY 165 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~~ 165 (419)
.|++++++.+.+.+.+.
T Consensus 173 ~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp BSHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999876554
No 203
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.85 E-value=2.5e-20 Score=157.54 Aligned_cols=151 Identities=23% Similarity=0.220 Sum_probs=108.1
Q ss_pred CC-CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHH
Q psy17089 1 MK-PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTK 77 (419)
Q Consensus 1 ~~-~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 77 (419)
|. .+|+++|++|||||||+|+|++.. ....+.+++.+.....+..++. .+.+|||||+.... ....
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~ 69 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNH--FVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---------AMRD 69 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC---------HHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCc--CccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh---------HHHH
Confidence 44 589999999999999999999764 3344445555555556667664 46799999987433 3445
Q ss_pred HHHHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeecc
Q psy17089 78 QAIIESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 78 ~~~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~ 147 (419)
.++..+|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (166)
T 2ce2_X 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGI-PYIETSAKT 148 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCC-eEEEecCCC
Confidence 56789999999999876432221 223333332 27899999999999874332 2232 3455 799999999
Q ss_pred CCCHHHHHHHHHHhcC
Q psy17089 148 GNGIKNFLENILTIEL 163 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~ 163 (419)
|.|++++++.+.+.+.
T Consensus 149 ~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 149 RQGVEDAFYTLVREIR 164 (166)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
No 204
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.85 E-value=1.3e-20 Score=160.31 Aligned_cols=151 Identities=18% Similarity=0.104 Sum_probs=108.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++... .....++...+.......+.+ ..+.+|||||+. ++......++
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~---------~~~~~~~~~~ 76 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSF-DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE---------RFRALAPMYY 76 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG---------GGGGGTHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch---------hhhcccHhhC
Confidence 5899999999999999999998642 122233333344445566665 578899999986 3334455678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..+...+.. ...|+++|+||+|+...+.. ..+. ..+. +++++||++|.|
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 155 (170)
T 1z0j_A 77 RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA-IFVETSAKNAIN 155 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTTTBS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC-EEEEEeCCCCcC
Confidence 99999999999986433222 334444443 36789999999999865443 2222 3444 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.+++
T Consensus 156 i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 156 INELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987653
No 205
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=164.60 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=111.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
++|+|+|.+|||||||+|+|++.. +...+.+++.+.....+.+++. .+.+|||||+.. +......++
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 83 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED---------YAAIRDNYF 83 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC---------CHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh---------hHHHHHHHH
Confidence 589999999999999999999764 3455666666666667777775 678999999873 334556678
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
..+|++++|+|..+..+... .++...... .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 162 (206)
T 2bov_A 84 RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYVETSAKTRA 162 (206)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECTTTCT
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCC-eEEEEeCCCCC
Confidence 89999999999886432211 222233322 37899999999999765443 2222 3455 78999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++++.|.+.+.+
T Consensus 163 gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 163 NVDKVFFDLMREIRA 177 (206)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887654
No 206
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=7.3e-23 Score=180.23 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=109.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
.+.++|+++|.+|||||||+++|++... ...+.+++.+.....+..++. .+.+|||||+.+.. ..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~ 94 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------RL 94 (204)
Confidence 3668999999999999999999997542 334444555444444555554 45589999984432 12
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEEcccCCChhhHH----------HHHHHHHHHcC
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRK----------IIKNNIKKKLN 323 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~----------~~~~~~~~~~~ 323 (419)
...+++.+|++++|+|++++.+..+. .++..+... +.|+++|+||+|+.+..... ...+.......
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 3th5_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 174 (204)
Confidence 22577889999999999988777665 355555544 79999999999997543111 01111122222
Q ss_pred CCCCCcEEEEeccCCCCHHHHHHHHHHH
Q psy17089 324 FLSFAMFNFISAIKLNNINSFMESINHV 351 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 351 (419)
..+..+++++||++|.|++++|+.+.+.
T Consensus 175 ~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 175 EIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 2222389999999999999999998764
No 207
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.84 E-value=2e-20 Score=161.75 Aligned_cols=149 Identities=17% Similarity=0.158 Sum_probs=110.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.. +...+.+++.+.....+.+++. .+.+|||||+.. +......++
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 87 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED---------YAAIRDNYF 87 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC---------CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc---------cHHHHHHHh
Confidence 589999999999999999999764 3455566666666666777774 678999999873 334556678
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
..+|++++|+|..+..+... .++...... .+.|+++|+||+|+...+.. .++. ..+. +++++||+++.
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 166 (187)
T 2a9k_A 88 RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYVETSAKTRA 166 (187)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-eEEEeCCCCCC
Confidence 89999999999886432211 222222222 37899999999999765443 2233 3454 78999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|++++++.|.+.+.
T Consensus 167 gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 167 NVDKVFFDLMREIR 180 (187)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987664
No 208
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.84 E-value=8.2e-21 Score=164.24 Aligned_cols=151 Identities=17% Similarity=0.076 Sum_probs=111.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||+. ++......++
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 80 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE---------RFRSVTRSYY 80 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG---------GGHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH---------HHHHHHHHHH
Confidence 5899999999999999999997642 233445566666667777877 578899999987 3445566778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..+...+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|
T Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 159 (186)
T 2bme_A 81 RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL-MFLETSALTGEN 159 (186)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEecCCCCCC
Confidence 99999999999886433222 222333332 47899999999999754443 2222 3444 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.+.+.+.+
T Consensus 160 i~~l~~~l~~~~~~ 173 (186)
T 2bme_A 160 VEEAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
No 209
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=7.6e-21 Score=168.23 Aligned_cols=152 Identities=20% Similarity=0.149 Sum_probs=112.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
++|+|+|++|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||+.. +......++
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 90 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER---------FRTITTAYY 90 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG---------GTCCCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH---------HHHHHHHHh
Confidence 5899999999999999999997642 244556777788778888888 5788999999863 223345678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCH
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGI 151 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v 151 (419)
..+|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|+
T Consensus 91 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 169 (213)
T 3cph_A 91 RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNV 169 (213)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTC-CEEECBTTTTBSS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCC-EEEEEeCCCCCCH
Confidence 89999999999886432222 233333333 26899999999999543322 2222 3455 7999999999999
Q ss_pred HHHHHHHHHhcCCc
Q psy17089 152 KNFLENILTIELPY 165 (419)
Q Consensus 152 ~~l~~~i~~~~~~~ 165 (419)
+++++.|.+.+.+.
T Consensus 170 ~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 170 NEIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876543
No 210
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.84 E-value=1.1e-20 Score=165.75 Aligned_cols=150 Identities=20% Similarity=0.127 Sum_probs=106.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC---------------------------------
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--------------------------------- 49 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------------------------------- 49 (419)
.+|+|+|++|||||||+|+|++... .....++++.+.....+.+++
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTF-HENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999998642 222334445555555555554
Q ss_pred ------eEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhH--HHHHHHHHhcCCCEEEEEecc
Q psy17089 50 ------KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQD--KLITNFLRKSGQPIVLVINKS 121 (419)
Q Consensus 50 ------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~~~~p~ilv~NK~ 121 (419)
..+.+|||||+.. +......++..+|++++|+|+.++.+... .++.......+.|+++|+||+
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~ 157 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQER---------YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKI 157 (208)
T ss_dssp CTTTCEEEEEEEECTTGGG---------CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred cCccceeEEEEEECCCcHH---------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 6788999999863 23345667889999999999987533322 233333334679999999999
Q ss_pred CCCCCCcc----hhHH-hcCCCCeEEEeeccCCCHHHHHHHHHHhcC
Q psy17089 122 ENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLENILTIEL 163 (419)
Q Consensus 122 Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v~~l~~~i~~~~~ 163 (419)
|+...... .++. ..+. +++++||++|.|++++++.|.+.+.
T Consensus 158 D~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 158 DKNKFQVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp TCC-CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CcccccCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHH
Confidence 93322222 2333 3455 8899999999999999999987654
No 211
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.84 E-value=2.1e-20 Score=164.24 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=109.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.... ....++.+.+.....+..++ ..+.+|||||+. ++......++
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 78 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE---------RYRTITTAYY 78 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC-SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG---------GGHHHHHTTG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEEECCeEEEEEEEECCCch---------hhcchHHHhh
Confidence 58999999999999999999986421 22234444455555666665 478899999997 4445567788
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..+...+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|
T Consensus 79 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 157 (203)
T 1zbd_A 79 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEASAKDNIN 157 (203)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC-EEEECBTTTTBS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC-eEEEEECCCCCC
Confidence 99999999999886432221 223333433 37899999999999875543 2222 3455 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.+.+
T Consensus 158 i~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 158 VKQTFERLVDVICE 171 (203)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876654
No 212
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-21 Score=172.95 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=107.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...+||+++|.+|||||||+++|++... . ..+..+........+..++ ..+.+|||||+.++...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 92 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------- 92 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC-C-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT-----------
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC-C-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH-----------
Confidence 3679999999999999999999998643 2 2333333333333444444 46888999998544311
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEEcccCCChhhH-HH---------HHHHHHHHcC
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQR-KI---------IKNNIKKKLN 323 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~-~~---------~~~~~~~~~~ 323 (419)
...+++.+|++++|+|++++.++.+. .|+..+.. .+.|+++|+||+|+.+.... .+ ..++......
T Consensus 93 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 172 (205)
T 1gwn_A 93 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK 172 (205)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHH
Confidence 12467889999999999987666654 35555554 47999999999999642110 00 0011111111
Q ss_pred CCCCCcEEEEecc-CCCCHHHHHHHHHHHHh
Q psy17089 324 FLSFAMFNFISAI-KLNNINSFMESINHVYD 353 (419)
Q Consensus 324 ~~~~~~~~~~SA~-~g~gv~~l~~~i~~~~~ 353 (419)
..+..+++++||+ +|.|++++|+.+.+.+.
T Consensus 173 ~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 173 QIGAATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 1223689999999 68999999999988754
No 213
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=7.3e-21 Score=189.50 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=96.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCcee---------------ee------cCCCCccceeeeEeeEEeCeeEEEEeCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRV---------------IT------YDTPGTTRDSIKSLFEYNNKKYILIDTAG 239 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~---------------~~------~~~~~~t~~~~~~~~~~~~~~~~liDtpG 239 (419)
...+|+++|++|+|||||+|+|+..... .+ ...+|+|.......+.+.+..+.||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 5679999999999999999999721100 01 11357777777788888899999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCCh
Q psy17089 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH 308 (419)
Q Consensus 240 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 308 (419)
+.++. ..+..+++.+|++|+|+|++++.+.+...++..+...++|+++|+||+|+...
T Consensus 92 ~~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred chhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 97765 33457889999999999999999999999999999999999999999999754
No 214
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.84 E-value=1.4e-20 Score=163.72 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=109.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccce-EEEEEECC-----------eEEEEEEcCCCCCcchhhHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRH-YGEGYIGK-----------KSFIIIDTGGFEPEVKKGIMH 70 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~liDtpG~~~~~~~~~~~ 70 (419)
.+|+|+|++|||||||+|+|++... .....++.+.+.. ...+..++ ..+.+|||||+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------- 81 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE--------- 81 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG---------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH---------
Confidence 5899999999999999999997542 1223344444444 34455553 478899999997
Q ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCC
Q psy17089 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGN 139 (419)
Q Consensus 71 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~ 139 (419)
++......++.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. +
T Consensus 82 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~ 160 (195)
T 3bc1_A 82 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGI-P 160 (195)
T ss_dssp GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-C
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-C
Confidence 444566778899999999999886433332 233333332 47899999999999764433 2232 3455 8
Q ss_pred eEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 140 PHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 140 ~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
++++||++|.|++++++.|.+.+.+
T Consensus 161 ~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 161 YFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 215
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.84 E-value=5.7e-21 Score=162.17 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=109.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++... .....++++.+.....+.+++. .+.+|||||+.. +......++
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 75 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE---------FDAITKAYY 75 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG---------TTCCCHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh---------HHHHHHHHh
Confidence 5899999999999999999998642 2333455666777777777764 788999999863 223345577
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCCH
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNGI 151 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~v 151 (419)
.++|++++|+|+.++.+... ..+...+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|+
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 76 RGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRTSVKEDLNV 154 (168)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECBTTTTBSS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEEecCCCCCH
Confidence 89999999999886432221 222333322 37899999999999765433 2222 3455 8899999999999
Q ss_pred HHHHHHHHHhcC
Q psy17089 152 KNFLENILTIEL 163 (419)
Q Consensus 152 ~~l~~~i~~~~~ 163 (419)
+++++.|.+.+.
T Consensus 155 ~~l~~~l~~~~~ 166 (168)
T 1z2a_A 155 SEVFKYLAEKHL 166 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 216
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=164.36 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=103.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.... ....++.+.+.....+.+++ ..+.+|||||+. ++......++
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 98 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNEFR-ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE---------RFRSIAKSYF 98 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCT---------TCHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCCccceeEEEEEEECCEEEEEEEEECCCCc---------chhhhHHHHH
Confidence 58999999999999999999976421 22233344455555666766 468899999987 3345566778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCC------CCcc-----hhHH-hcCCCCeEEEe
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENIN------SSIS-----LDFY-ELGIGNPHIIS 144 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~------~~~~-----~~~~-~~~~~~~~~vS 144 (419)
.++|++++|+|+.++.+... ..+...+.. .+.|+++|+||+|+.. .+.. ..+. ..+. +++++|
T Consensus 99 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~S 177 (199)
T 2p5s_A 99 RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA-LFCETS 177 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC-EEEECC
T ss_pred hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC-eEEEee
Confidence 99999999999886433322 233344443 3789999999999862 2222 2222 3455 789999
Q ss_pred eccCCCHHHHHHHHHHhcCC
Q psy17089 145 ALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 145 a~~~~~v~~l~~~i~~~~~~ 164 (419)
|++|.|++++++.|.+.+.+
T Consensus 178 A~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 178 AKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987653
No 217
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.84 E-value=4e-21 Score=163.42 Aligned_cols=151 Identities=21% Similarity=0.143 Sum_probs=105.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||+... ......++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~ 73 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF---------RTITTAYY 73 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGT---------SCCCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh---------hhhHHHHh
Confidence 5899999999999999999997642 233455666677666777766 46789999998632 23345567
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCCH
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGI 151 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~v 151 (419)
.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv 152 (170)
T 1g16_A 74 RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNV 152 (170)
T ss_dssp TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTC-CEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCC-eEEEEECCCCCCH
Confidence 89999999999886433222 233333333 37899999999999543332 2222 3455 7999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy17089 152 KNFLENILTIELP 164 (419)
Q Consensus 152 ~~l~~~i~~~~~~ 164 (419)
+++++.|.+.+.+
T Consensus 153 ~~l~~~l~~~~~~ 165 (170)
T 1g16_A 153 NEIFFTLAKLIQE 165 (170)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 218
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.84 E-value=5.7e-21 Score=164.76 Aligned_cols=145 Identities=19% Similarity=0.267 Sum_probs=105.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|.+|||||||+|+|++..........+ .....+.+++..+.+|||||++. +......++.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~ 88 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQES---------LRSSWNTYYTN 88 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS----SSCEEEEETTEEEEEEEESSSGG---------GTCGGGGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc----eeeEEEEECCEEEEEEECCCCHh---------HHHHHHHHhcc
Confidence 589999999999999999999875422222222 33456677899999999999973 22334556789
Q ss_pred CCEEEEEEeCCCCCCHh--HHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHHh------cCCCCeEEEeeccC
Q psy17089 83 SDIIIFIVDGRQGLVEQ--DKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYE------LGIGNPHIISALYG 148 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~--~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~~------~~~~~~~~vSa~~~ 148 (419)
+|++++|+|+.+..+.. ..++...++. .+.|+++|+||+|+...... .+... .+. .++++||++|
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g 167 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW-HIQACCALTG 167 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECBTTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCce-EEEEccCCCC
Confidence 99999999998754333 3445555543 57899999999999775332 12211 112 6799999999
Q ss_pred CCHHHHHHHHHHh
Q psy17089 149 NGIKNFLENILTI 161 (419)
Q Consensus 149 ~~v~~l~~~i~~~ 161 (419)
.|++++++.|.+.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999998753
No 219
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.84 E-value=6.8e-21 Score=165.74 Aligned_cols=151 Identities=20% Similarity=0.098 Sum_probs=107.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|++|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||+.. +......++
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~ 91 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES---------FRSITRSYY 91 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCC-C-----CCSSEEEEEEEETTEEEEEEEECCTTGGG---------TSCCCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCchh---------hhhhHHHHh
Confidence 48999999999999999999976422 223345566666667777774 788999999873 223345678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.+..+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. .++++||++|.|
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g 170 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL-IFMETSAKTACN 170 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECTTTCTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999886433222 233333433 37899999999999765443 2222 3454 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.+.+
T Consensus 171 i~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 171 VEEAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876643
No 220
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=3.2e-20 Score=158.07 Aligned_cols=150 Identities=20% Similarity=0.178 Sum_probs=104.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++... ...+.++...........++ ..+.+|||||+.+ +......++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~---------~~~~~~~~~ 72 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTF--RESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ---------FPAMQRLSI 72 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCC--CSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSS---------CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEECCCchh---------hHHHHHHhc
Confidence 5899999999999999999998642 22222222222233444554 3678999999873 334455678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh-----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~ 148 (419)
..+|++++|+|+.++.+... ..+...+.+ .+.|+++|+||+|+...+.. ..+. ..+. +++++||++|
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 151 (172)
T 2erx_A 73 SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC-AFMETSAKLN 151 (172)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEECBTTTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEecCCCC
Confidence 89999999999886432222 333333333 36899999999999765543 1222 3344 7899999999
Q ss_pred CCHHHHHHHHHHhcCC
Q psy17089 149 NGIKNFLENILTIELP 164 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~ 164 (419)
.|+++++++|.+.+..
T Consensus 152 ~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 152 HNVKELFQELLNLEKR 167 (172)
T ss_dssp BSHHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999987654
No 221
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.84 E-value=1.6e-21 Score=188.63 Aligned_cols=159 Identities=21% Similarity=0.325 Sum_probs=119.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe-EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.++|+|+|++|+|||||+|+|++...+.++..+++|.+.....+.+.+. .+.+|||||+.+... ...........++
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~--l~~~~~~~~~~~l 111 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGE--LGRLRVEKARRVF 111 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCT--TCCCCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccc--hhHHHHHHHHHHH
Confidence 3689999999999999999999987666778889999999999999876 899999999975431 1111123356678
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH-hcCCCCeEEEeeccCCCHHHHHH
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALYGNGIKNFLE 156 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~~~~~~vSa~~~~~v~~l~~ 156 (419)
..+|++++|+|+ +.......+.+++++.++|+++|+||+|+...... .++. ..+. +++++||++|.|++++++
T Consensus 112 ~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~-~v~~vSAktg~gI~eL~~ 188 (423)
T 3qq5_A 112 YRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEA-KVLLVSALQKKGFDDIGK 188 (423)
T ss_dssp TSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTC-CCCCCSSCCTTSTTTHHH
T ss_pred hcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCC-CEEEEECCCCCCHHHHHH
Confidence 899999999998 56777888889998889999999999999877664 1222 2344 789999999999999999
Q ss_pred HHHHhcCCc
Q psy17089 157 NILTIELPY 165 (419)
Q Consensus 157 ~i~~~~~~~ 165 (419)
.|.+.+++.
T Consensus 189 ~L~~~l~~~ 197 (423)
T 3qq5_A 189 TISEILPGD 197 (423)
T ss_dssp HHHHHSCCC
T ss_pred HHHHhhhhh
Confidence 999998765
No 222
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.84 E-value=1.3e-20 Score=172.37 Aligned_cols=161 Identities=16% Similarity=0.180 Sum_probs=122.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCC-CCccceEEEEEECCeEEEEEEcCCCCCcc--hhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPG-LTRDRHYGEGYIGKKSFIIIDTGGFEPEV--KKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~ 79 (419)
.+|+|+|++|||||||+|+|++...+.....++ +|+++....+.+++..+.+|||||+.+.. .+...+.+...+..+
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~ 102 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLS 102 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999987555555555 89999999999999999999999987542 122334455666667
Q ss_pred HHhCCEEEEEEeCCCCCCHhHHHHHHHHHhc-----CCCEEEEEe-ccCCCCCCcchh------------HH-hcCC---
Q psy17089 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRKS-----GQPIVLVIN-KSENINSSISLD------------FY-ELGI--- 137 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~-----~~p~ilv~N-K~Dl~~~~~~~~------------~~-~~~~--- 137 (419)
++.+|++++|+|+.+ +...+.++.+++.+. ..|.++|+| |+|+.... ..+ +. ..+.
T Consensus 103 ~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 180 (260)
T 2xtp_A 103 APGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRIC 180 (260)
T ss_dssp TTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEE
T ss_pred CCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEE
Confidence 889999999999985 777777777777764 567777777 99998542 211 22 2221
Q ss_pred -CCeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 138 -GNPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 138 -~~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
...+++||+++.|++++++.|.+.++..
T Consensus 181 ~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 181 AFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 1127899999999999999999877654
No 223
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.84 E-value=2.5e-23 Score=182.51 Aligned_cols=159 Identities=17% Similarity=0.111 Sum_probs=106.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||+.+....+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------- 99 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT---------- 99 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCC-CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH----------
Confidence 4679999999999999999999998643 333345556666666677766 468889999986654221
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHH-HHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+..... .....+... .++++++
T Consensus 100 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~ 174 (199)
T 3l0i_B 100 -SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS----LGIPFLE 174 (199)
T ss_dssp -CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT----TTCCBCC
T ss_pred -HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHH----cCCeEEE
Confidence 2467889999999999997665554 34444443 378999999999996542210 011111111 2368999
Q ss_pred EeccCCCCHHHHHHHHHHHHhh
Q psy17089 333 ISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
+||++|.|++++|++|.+.+..
T Consensus 175 vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 175 TSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CCC---HHHHHHHHHHTTTTTT
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999876543
No 224
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.84 E-value=7.3e-21 Score=179.42 Aligned_cols=165 Identities=21% Similarity=0.201 Sum_probs=122.0
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC-eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
.+|+++|.+|||||||+|+|++.. ..+++++++|..+....+.+++ ..+.+|||||+.+....+.. .....+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~----l~~~fl~~ 233 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG----LGHQFLRH 233 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT----THHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccch----hHHHHHHH
Confidence 369999999999999999999875 3567889999988887777765 79999999997432111100 11334567
Q ss_pred HhhcCEEEEEecCCC---CCCHHHH-HHHHHHHH-----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEE
Q psy17089 262 ILEANVVILLLDAQQ---NISAQDI-NIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~---~~~~~~~-~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
+..+|++|+|+|+++ ..+.++. .+...+.. .++|+++|+||+|+..... ..+.+.+.+... .++++
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~~~l~~~--~~v~~ 308 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEKLTDD--YPVFP 308 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHHCCSC--CCBCC
T ss_pred HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH---HHHHHHHHhhcC--CCEEE
Confidence 788999999999987 4445554 34555554 3799999999999975432 223444444421 57899
Q ss_pred EeccCCCCHHHHHHHHHHHHhhcCC
Q psy17089 333 ISAIKLNNINSFMESINHVYDSSII 357 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~~~~~~ 357 (419)
+||+++.|+++|++.|.+.+.....
T Consensus 309 iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 309 ISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred EECCCCcCHHHHHHHHHHHHhhCcc
Confidence 9999999999999999998876543
No 225
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.84 E-value=2e-20 Score=162.71 Aligned_cols=146 Identities=23% Similarity=0.229 Sum_probs=105.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|++|||||||+++|.+.... .+ ..|.......+.+++..+.+|||||+... ......++++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~---~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~~ 90 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA---TL-QPTWHPTSEELAIGNIKFTTFDLGGHIQA---------RRLWKDYFPE 90 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC---CC-CCCCSCEEEEEEETTEEEEEEECCCSGGG---------TTSGGGGCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC---cc-ccCCCCCeEEEEECCEEEEEEECCCCHHH---------HHHHHHHHhc
Confidence 58999999999999999999976422 22 23445566788889999999999999732 2233455789
Q ss_pred CCEEEEEEeCCCCCCH--hHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHHhc------------CCCCeEE
Q psy17089 83 SDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYEL------------GIGNPHI 142 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~~~------------~~~~~~~ 142 (419)
+|++++|+|++++.+. ...++...++. .+.|+++|+||+|+...... .+.... ...++++
T Consensus 91 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T 1m2o_B 91 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFM 170 (190)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEE
Confidence 9999999999875432 22344444432 57899999999999763322 222211 1125799
Q ss_pred EeeccCCCHHHHHHHHHHh
Q psy17089 143 ISALYGNGIKNFLENILTI 161 (419)
Q Consensus 143 vSa~~~~~v~~l~~~i~~~ 161 (419)
+||++|.|++++++.|.+.
T Consensus 171 ~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 171 CSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CBTTTTBSHHHHHHHHHTT
T ss_pred eECCcCCCHHHHHHHHHhh
Confidence 9999999999999999864
No 226
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.84 E-value=1.4e-20 Score=161.93 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=100.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC---CeEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG---KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
++|+++|.+|||||||+|+|++... .....++++.+.....+.++ ...+.+|||||+. .+......+
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~ 78 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKY-SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE---------RFQSLGVAF 78 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------CC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcC-CcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh---------HhhhhhHHH
Confidence 5899999999999999999998642 12334455566666666665 2578999999986 444555667
Q ss_pred HHhCCEEEEEEeCCCCCCHhH--HHHHHHHHh------cCCCEEEEEeccCCCCCCc-c-----hhHHh-cCCCCeEEEe
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD--KLITNFLRK------SGQPIVLVINKSENINSSI-S-----LDFYE-LGIGNPHIIS 144 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~-~-----~~~~~-~~~~~~~~vS 144 (419)
+.++|++++|+|+.++.+... .++...... .+.|+++|+||+|+..... . .++.. ....+++++|
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~S 158 (182)
T 1ky3_A 79 YRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTS 158 (182)
T ss_dssp STTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEB
T ss_pred hhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEe
Confidence 889999999999886433222 222222222 4679999999999964332 1 23333 3444789999
Q ss_pred eccCCCHHHHHHHHHHhcC
Q psy17089 145 ALYGNGIKNFLENILTIEL 163 (419)
Q Consensus 145 a~~~~~v~~l~~~i~~~~~ 163 (419)
|++|.|++++++.|.+.+.
T Consensus 159 a~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 159 AKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987654
No 227
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=1.1e-20 Score=166.51 Aligned_cols=152 Identities=20% Similarity=0.122 Sum_probs=111.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++... .....++++.+.....+.+++. .+.+|||||+... ......++
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 78 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF---------RTITSSYY 78 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT---------TCCCGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH---------HHHHHHhc
Confidence 5899999999999999999998642 2334456677777777788775 7889999998733 22344567
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|
T Consensus 79 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 157 (206)
T 2bcg_Y 79 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM-PFLETSALDSTN 157 (206)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEECCTTTCTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 89999999999886433222 223333333 36899999999999875543 2233 3454 789999999999
Q ss_pred HHHHHHHHHHhcCCc
Q psy17089 151 IKNFLENILTIELPY 165 (419)
Q Consensus 151 v~~l~~~i~~~~~~~ 165 (419)
++++++.|.+.+.+.
T Consensus 158 i~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 158 VEDAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876543
No 228
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.84 E-value=8.5e-21 Score=166.47 Aligned_cols=151 Identities=16% Similarity=0.090 Sum_probs=105.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||+. ++......++
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 95 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKF-KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE---------RFRSVTRSYY 95 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH---------HHSCCCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC-CccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH---------hHHHHHHHHh
Confidence 5899999999999999999997642 233445566666667777777 578899999975 3444456678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. .++++||++|.|
T Consensus 96 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~g~g 174 (200)
T 2o52_A 96 RGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLETSALTGEN 174 (200)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEECTTTCTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 99999999999886433222 222333322 37899999999999754443 2222 3344 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.+.+
T Consensus 175 i~~l~~~l~~~i~~ 188 (200)
T 2o52_A 175 VEEAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
No 229
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=2.9e-21 Score=170.07 Aligned_cols=149 Identities=20% Similarity=0.208 Sum_probs=109.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEE--EEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFI--IIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|.+|||||||+++|++.. +...+.+++.+.....+.+++..+. +|||||++ ++......++
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 99 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE---------DYDRLRPLSY 99 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG---------GGTTTGGGGC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCC--CCCCcCCeecceeEEEEEECCEEEEEEEEECCCch---------hhHHHHHHHh
Confidence 589999999999999999999743 3455666676666666777765554 99999997 3333445568
Q ss_pred HhCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCCEEEEEeccCCCCCCc------------c-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRKS--GQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~--~~~~~l~~~--~~p~ilv~NK~Dl~~~~~------------~-----~~~~-~~~~~ 138 (419)
.++|++++|+|+.++.+.... .+...+... +.|+++|+||+|+..... . ..+. ..+..
T Consensus 100 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 4gzl_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc
Confidence 899999999999875443332 455555554 889999999999976543 1 1122 34554
Q ss_pred CeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 139 NPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
+++++||++|.|++++++.+.+.+
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 180 KYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998753
No 230
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=9e-21 Score=163.83 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=110.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+++|++.. +...+.+++.+.....+.+++.. +.+|||||++. +......++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~ 74 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED---------YDRLRPLSY 74 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS--CCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG---------GTTTGGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC--CCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHh---------HHHHHHHhc
Confidence 589999999999999999999753 34455555656555666777754 55999999973 223334467
Q ss_pred HhCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCCEEEEEeccCCCCCC------------cc-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRKS--GQPIVLVINKSENINSS------------IS-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~--~~~~~l~~~--~~p~ilv~NK~Dl~~~~------------~~-----~~~~-~~~~~ 138 (419)
.++|++++|+|+.++.+.... .+...+... +.|+++|+||+|+.... .. .++. ..+..
T Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (186)
T 1mh1_A 75 PQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 154 (186)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 899999999999864333332 355555543 78999999999997642 11 1222 33444
Q ss_pred CeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 139 NPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
+++++||++|.|++++++.+.+.+.+.
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 155 KYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred EEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 789999999999999999999887764
No 231
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=7.4e-21 Score=184.90 Aligned_cols=151 Identities=18% Similarity=0.185 Sum_probs=112.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCc-------ee-e--e------cCCCCccceeeeEeeEEeCeeEEEEeCCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGEN-------RV-I--T------YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~-------~~-~--~------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 243 (419)
...++|+++|++|+|||||+++|++.. .+ . . ....|+|.+.....+...+..+.+|||||+.+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~- 87 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD- 87 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG-
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH-
Confidence 356899999999999999999998630 00 0 0 01346777776666666678999999999943
Q ss_pred CcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccCCCh-hhHHHHHHHHHHH
Q psy17089 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIH-NQRKIIKNNIKKK 321 (419)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~-~~~~~~~~~~~~~ 321 (419)
|. ..+..++..+|++|+|+|++++...+..+++..+...++| +++|+||+|+.+. ...+...+++.+.
T Consensus 88 ---------f~-~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~ 157 (405)
T 2c78_A 88 ---------YI-KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDL 157 (405)
T ss_dssp ---------GH-HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred ---------HH-HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence 32 3445788899999999999999988888899888888999 8999999999853 2223333344444
Q ss_pred cCCCC----CCcEEEEeccCCCCH
Q psy17089 322 LNFLS----FAMFNFISAIKLNNI 341 (419)
Q Consensus 322 ~~~~~----~~~~~~~SA~~g~gv 341 (419)
+...+ ..+++++||++|.|+
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v 181 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQ 181 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHH
T ss_pred HHHhcccccCCCEEEccHHHhhhh
Confidence 33222 378999999999873
No 232
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.84 E-value=4.6e-20 Score=160.21 Aligned_cols=150 Identities=23% Similarity=0.249 Sum_probs=103.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|.+|||||||+|+|++.. +...+.+++.+.....+.+++. .+.+|||||+. ++......++
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 90 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE---------EYSAMRDQYM 90 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------C
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC--CccccCCccceEEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHhh
Confidence 589999999999999999999754 3445555666656666777775 47899999987 4445566778
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
..+|++++|+|..+..+..+ ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|
T Consensus 91 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 169 (190)
T 3con_A 91 RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGI-PFIETSAKTRQG 169 (190)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC-CEEECCTTTCTT
T ss_pred CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999999886433222 222333332 37899999999999874332 2333 3455 799999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.+.+
T Consensus 170 i~~l~~~l~~~~~~ 183 (190)
T 3con_A 170 VEDAFYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876643
No 233
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=3.9e-22 Score=196.40 Aligned_cols=154 Identities=25% Similarity=0.248 Sum_probs=112.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceee------------------------------ecCCCCccceeeeEeeEEeCe
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI------------------------------TYDTPGTTRDSIKSLFEYNNK 230 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~ 230 (419)
..++|+++|++|+|||||+|+|++..... .....|+|.+.....+..++.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 56899999999999999999998531000 011357888777777777788
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCH-------HHHHHHHHHHHcCCc-EEEEEEc
Q psy17089 231 KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISA-------QDINIANFIYESGRS-LIVCVNK 302 (419)
Q Consensus 231 ~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~-~iiv~NK 302 (419)
.+.+|||||+. .|. .....++..+|++|+|+|++++... +..+++..+...+.| +++|+||
T Consensus 86 ~~~iiDtPGh~----------~f~-~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK 154 (458)
T 1f60_A 86 QVTVIDAPGHR----------DFI-KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK 154 (458)
T ss_dssp EEEEEECCCCT----------THH-HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred eEEEEECCCcH----------HHH-HHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 99999999994 332 3445678899999999999986433 566667777777876 9999999
Q ss_pred ccCCC--hhhHHHHHHHHHHHcCCCC----CCcEEEEeccCCCCHHHHH
Q psy17089 303 WDSII--HNQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINSFM 345 (419)
Q Consensus 303 ~Dl~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~l~ 345 (419)
+|+.+ ....+...+++...+...+ .++++++||++|.|+.++.
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 99973 3333344444444433222 3689999999999998764
No 234
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=9.9e-21 Score=165.06 Aligned_cols=149 Identities=18% Similarity=0.146 Sum_probs=109.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+++|++.. +...+.+++.+.....+.+++ ..+.+|||||+.... .....++
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 87 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD---------RLRPLSY 87 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST---------TTGGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh---------HHHHHhc
Confidence 489999999999999999999763 345555566665555666666 567899999997432 2334567
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHhc--CCCEEEEEeccCCCCCC------------cc-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINSS------------IS-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~Dl~~~~------------~~-----~~~~-~~~~~ 138 (419)
.++|++++|+|..++.+... ..+...+... +.|+++|+||+|+.... .. .++. ..+..
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 89999999999886433222 2345555553 88999999999997642 11 1222 34544
Q ss_pred CeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 139 NPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
.++++||++|.|++++++.+.+.+
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998764
No 235
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=3.7e-21 Score=167.39 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=108.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC--CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG--KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|.+|||||||+|+|++.... ....++.+.+.....+.++ +..+.+|||||++ .+......++
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 93 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFT-PAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE---------RYRTITTAYY 93 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTC-CCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH---------HCHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCC-cccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH---------HHHHHHHHHH
Confidence 58999999999999999999975421 1112223334444445543 5679999999976 5556677789
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.+..+... ..+...+.. .+.|+++|+||+|+...+.. ..+. ..+. .++++||++|.|
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 172 (191)
T 3dz8_A 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF-DFFEASAKENIS 172 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTTTBS
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEECCCCCC
Confidence 99999999999886422221 334444444 47899999999999765544 1222 4455 789999999999
Q ss_pred HHHHHHHHHHhcC
Q psy17089 151 IKNFLENILTIEL 163 (419)
Q Consensus 151 v~~l~~~i~~~~~ 163 (419)
++++++.|.+.+.
T Consensus 173 i~~l~~~l~~~i~ 185 (191)
T 3dz8_A 173 VRQAFERLVDAIC 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 236
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.83 E-value=1e-20 Score=164.34 Aligned_cols=151 Identities=18% Similarity=0.145 Sum_probs=107.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.... ....++.+.+.....+...+ ..+.+|||||+.... .....++
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~ 92 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR---------TITTAYY 92 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC---------CSGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh---------hhHHHhc
Confidence 58999999999999999999986422 22234444455555566655 478899999987432 2334567
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.|
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 171 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF-EFFEASAKENIN 171 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTTTBS
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEEECCCCCC
Confidence 89999999999876433222 233444443 37899999999999765443 2222 3455 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.+.+
T Consensus 172 i~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 172 VKQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876643
No 237
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.83 E-value=1.7e-20 Score=181.79 Aligned_cols=162 Identities=15% Similarity=0.199 Sum_probs=118.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCce------e---------eecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCc
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENR------V---------ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNK 245 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 245 (419)
+.++|+++|++|+|||||+++|++... + ......|+|.+.....+...+..+.+|||||+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~----- 76 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH----- 76 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH-----
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh-----
Confidence 358999999999999999999986310 0 01123567777655555556789999999998
Q ss_pred chHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccCCCh-hhHHHHHHHHHHHcC
Q psy17089 246 TFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIH-NQRKIIKNNIKKKLN 323 (419)
Q Consensus 246 ~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~ 323 (419)
++|. .....++..+|++|+|+|++++...+..+++..+...++| +++|+||+|+.+. ...+...+++.+.+.
T Consensus 77 -----~~f~-~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 77 -----ADYV-KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT 150 (397)
T ss_dssp -----HHHH-HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHH-HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence 5553 3445678899999999999999888888888888888999 7899999999852 222333344444433
Q ss_pred CCC----CCcEEEEeccCCCC----------HHHHHHHHHHHHh
Q psy17089 324 FLS----FAMFNFISAIKLNN----------INSFMESINHVYD 353 (419)
Q Consensus 324 ~~~----~~~~~~~SA~~g~g----------v~~l~~~i~~~~~ 353 (419)
..+ ..+++++||++|.| +++|++.+.+.++
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 222 36899999999765 6777777766554
No 238
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.83 E-value=1.9e-20 Score=185.83 Aligned_cols=156 Identities=22% Similarity=0.286 Sum_probs=113.1
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCc------------------------------eeeecCCCCccceeeeEeeEEeC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGEN------------------------------RVITYDTPGTTRDSIKSLFEYNN 229 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~------------------------------~~~~~~~~~~t~~~~~~~~~~~~ 229 (419)
...++|+++|++|+|||||+++|++.. .......+|+|.+.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 356899999999999999999997541 11223445888888888888888
Q ss_pred eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCC-------CCHHHHHHHHHHHHcCC-cEEEEEE
Q psy17089 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-------ISAQDINIANFIYESGR-SLIVCVN 301 (419)
Q Consensus 230 ~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~-------~~~~~~~~~~~~~~~~~-~~iiv~N 301 (419)
..+.||||||+.+ |. ..+..+++.+|++|+|+|++++ ...+..+.+..+...+. |+++|+|
T Consensus 111 ~~~~iiDTPG~~~----------f~-~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviN 179 (483)
T 3p26_A 111 ANFTIVDAPGHRD----------FV-PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 179 (483)
T ss_dssp CEEEEECCCCCGG----------GH-HHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred ceEEEEECCCcHH----------HH-HHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999999943 32 4455788999999999999987 34566677777777774 5999999
Q ss_pred cccCCC--hhhHHHHHHHHHHHcCCC----CCCcEEEEeccCCCCHHHHHH
Q psy17089 302 KWDSII--HNQRKIIKNNIKKKLNFL----SFAMFNFISAIKLNNINSFME 346 (419)
Q Consensus 302 K~Dl~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~g~gv~~l~~ 346 (419)
|+|+.+ ....++..+.+...+... ..++++++||++|.|++++..
T Consensus 180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 999976 233333444444433211 146899999999999987643
No 239
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=165.00 Aligned_cols=151 Identities=19% Similarity=0.153 Sum_probs=106.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++.. +...+.+++.+.....+.+++. .+.+|||||++... .....++
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~ 89 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFD---------KLRPLCY 89 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCS---------SSGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHH---------HHhHhhc
Confidence 589999999999999999999864 4556666677666667778875 55699999997432 2233467
Q ss_pred HhCCEEEEEEeCCCCCCHhHH--HHHHHHHh--cCCCEEEEEeccCCCCC------------Ccc-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINS------------SIS-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~Dl~~~------------~~~-----~~~~-~~~~~ 138 (419)
.++|++++|+|+.++.+.... .+...+.. .+.|+++|+||+|+... +.. ..+. ..+..
T Consensus 90 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (201)
T 2q3h_A 90 TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAA 169 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 899999999999864433331 34444544 37899999999999753 111 2222 33444
Q ss_pred CeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 139 NPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
.++++||++|.|++++++.+.+.+.+
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 78999999999999999999876643
No 240
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=161.67 Aligned_cols=151 Identities=20% Similarity=0.129 Sum_probs=106.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.... ....++.+.+.......+++ ..+.+|||||+... ......++
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 95 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFS-HDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY---------RAITSAYY 95 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCC-SSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT---------CTTHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh---------hhhhHHHh
Confidence 58999999999999999999986422 22223344444445555554 56789999999733 23455678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+...+.. ..+. ..+. .++++||++|.|
T Consensus 96 ~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 174 (193)
T 2oil_A 96 RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL-LFLETSALDSTN 174 (193)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEECTTTCTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999886433221 233333332 37899999999999765443 2233 3454 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.+.+
T Consensus 175 i~~l~~~l~~~i~~ 188 (193)
T 2oil_A 175 VELAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876543
No 241
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.83 E-value=7.7e-20 Score=177.84 Aligned_cols=163 Identities=20% Similarity=0.160 Sum_probs=108.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCce--eeecCCCCccceeeeEeeEE---------------e--------CeeEEEE
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENR--VITYDTPGTTRDSIKSLFEY---------------N--------NKKYILI 235 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~--~~~~~~~~~t~~~~~~~~~~---------------~--------~~~~~li 235 (419)
..++|+++|++++|||||+++|++... ......+|+|.+........ . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 568999999999999999999997532 12223456677554332221 1 1578999
Q ss_pred eCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCC-CHHHHHHHHHHHHcCC-cEEEEEEcccCCChhhHHH
Q psy17089 236 DTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-SAQDINIANFIYESGR-SLIVCVNKWDSIIHNQRKI 313 (419)
Q Consensus 236 DtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~~~~~~~~ 313 (419)
||||+ +.|. ......+..+|++++|+|++++. ..+..+.+..+...+. |+++|+||+|+.+......
T Consensus 87 DtPGh----------~~f~-~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~ 155 (408)
T 1s0u_A 87 DSPGH----------ETLM-ATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEE 155 (408)
T ss_dssp ECSSH----------HHHH-HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTT
T ss_pred ECCCH----------HHHH-HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHH
Confidence 99998 5553 33445667789999999999876 6777776666666554 7999999999986543222
Q ss_pred HHHHHHHHcCC--CCCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 314 IKNNIKKKLNF--LSFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 314 ~~~~~~~~~~~--~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
..+++.+.+.. ....+++++||++|.|+++|++.|.+.++.
T Consensus 156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 33344444443 235789999999999999999999986653
No 242
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.83 E-value=6.1e-20 Score=157.60 Aligned_cols=145 Identities=14% Similarity=0.151 Sum_probs=102.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+|+|++... .. +.+++.+.....+.+++. .+.+|||||++. ..++
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~--~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------------~~~~ 70 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSY--QV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD--------------AKFS 70 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCC--CC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC--------------HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch--------------hHHH
Confidence 5899999999999999999998642 22 333344445566777774 567999999872 2357
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh------cCCCEEEEEeccCCCC--CCcc-----hhHH-hcCCCCeEEEee
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENIN--SSIS-----LDFY-ELGIGNPHIISA 145 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~Dl~~--~~~~-----~~~~-~~~~~~~~~vSa 145 (419)
+++|++++|+|..++.+... ..+.+++.. .+.|+++|+||+|+.. .+.. .++. ..+..+++++||
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 150 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXA 150 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBT
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEec
Confidence 88999999999886433332 222223332 3689999999999942 2222 2233 232237899999
Q ss_pred ccCCCHHHHHHHHHHhcCC
Q psy17089 146 LYGNGIKNFLENILTIELP 164 (419)
Q Consensus 146 ~~~~~v~~l~~~i~~~~~~ 164 (419)
++|.|++++|+.+.+.+..
T Consensus 151 ~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 151 TYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999876644
No 243
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.83 E-value=1.9e-20 Score=163.20 Aligned_cols=152 Identities=22% Similarity=0.197 Sum_probs=105.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeE--EEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+++|++|||||||+|+|++....+...+++++.+.....+.++|.. +.+|||+|..... + .....++
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~------~--~~~~~~~ 78 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN------E--WLHDHCM 78 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----------C--TTGGGHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh------h--hHHHhhc
Confidence 5899999999999999999997554455556667777777778888864 4689999986311 1 1223456
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc--h---hHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS--L---DFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~--~---~~~-~~~~~~~~~vSa~~~~ 149 (419)
+.+|++++|+|.++..+... ..+...+.. .+.|+++|+||+|+...+.. . .+. ..+. +++++||++|.
T Consensus 79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~-~~~e~SA~~g~ 157 (192)
T 2cjw_A 79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX-KFIETSAAVQH 157 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTTTB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCC-ceEEeccccCC
Confidence 78999999999876433222 223333332 36899999999999764443 1 121 2333 78999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|++++|+.+.+.+.
T Consensus 158 ~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 NVKELFEGIVRQVR 171 (192)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 244
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=164.10 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=97.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++.. +...+.+++.+.....+.+++. .+.+|||||++ ++......++
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 103 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGA--FPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD---------DYDRLRPLFY 103 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC-----------------------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCccceeEEEEEEECCEEEEEEEEECCCch---------hhhHHHHHHh
Confidence 489999999999999999999754 2344445555555556677775 67899999987 4445556678
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCc------------c-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~------------~-----~~~~-~~~~~ 138 (419)
.++|++++|+|+.++.+... ..+...+.. .+.|+++|+||+|+..... . .++. ..+..
T Consensus 104 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 183 (214)
T 2j1l_A 104 PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAV 183 (214)
T ss_dssp -CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCC
Confidence 89999999999886433222 134444443 3789999999999976531 1 1222 34444
Q ss_pred CeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 139 NPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
.++++||++|.|++++++.|.+.+.+
T Consensus 184 ~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 184 AYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999876643
No 245
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.83 E-value=1.3e-20 Score=165.87 Aligned_cols=153 Identities=18% Similarity=0.135 Sum_probs=109.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||+... ......++
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 78 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF---------QSLGVAFY 78 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG---------SCSCCGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH---------HHhHHHHH
Confidence 58999999999999999999986422 23345566676666666666 47889999998632 22334567
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh------cCCCEEEEEeccCCCCCCcc----hhHHh-cCCCCeEEEeecc
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK------SGQPIVLVINKSENINSSIS----LDFYE-LGIGNPHIISALY 147 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~----~~~~~-~~~~~~~~vSa~~ 147 (419)
.++|++++|+|+.++.+... .++..+... .+.|+++|+||+|+...... ..+.. ....+++++||++
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 79 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKE 158 (207)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 89999999999886433222 233333322 37899999999999854332 22332 3334789999999
Q ss_pred CCCHHHHHHHHHHhcCCc
Q psy17089 148 GNGIKNFLENILTIELPY 165 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~~ 165 (419)
|.|++++++.|.+.+.+.
T Consensus 159 g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 159 AINVEQAFQTIARNALKQ 176 (207)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999877654
No 246
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.83 E-value=3.9e-20 Score=164.25 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=108.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC------------CeEEEEEEcCCCCCcchhhHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG------------KKSFIIIDTGGFEPEVKKGIMH 70 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~liDtpG~~~~~~~~~~~ 70 (419)
.+|+|+|++|||||||+|+|++... .....++++.+.....+.++ ...+.+|||||+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~--------- 95 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE--------- 95 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH---------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH---------
Confidence 5899999999999999999997642 12222333444444445554 3578899999976
Q ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHh-------cCCCEEEEEeccCCCCCCcc-----hhHH-hcCC
Q psy17089 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK-------SGQPIVLVINKSENINSSIS-----LDFY-ELGI 137 (419)
Q Consensus 71 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~ 137 (419)
++......++.++|++++|+|+.+..+ ...+..|+.. .+.|+++|+||+|+...+.. .++. ..+.
T Consensus 96 ~~~~~~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~ 173 (217)
T 2f7s_A 96 RFRSLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI 173 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred hHHhHHHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCC
Confidence 566677788999999999999886322 2333444443 36799999999999765443 2233 3455
Q ss_pred CCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 138 GNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 138 ~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
+++++||+++.|+++++++|.+.+.+
T Consensus 174 -~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 174 -PYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp -CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred -cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 79999999999999999999987654
No 247
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.83 E-value=4.9e-20 Score=180.57 Aligned_cols=155 Identities=25% Similarity=0.312 Sum_probs=113.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeee----------cCC----------------------CCccceeeeEeeEEe
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVIT----------YDT----------------------PGTTRDSIKSLFEYN 228 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~----------~~~----------------------~~~t~~~~~~~~~~~ 228 (419)
..++|+++|++|+|||||+++|++...... +.. .|+|.+.....+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 558999999999999999999985431111 111 345555555556667
Q ss_pred CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCC-cEEEEEEcccCCC
Q psy17089 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR-SLIVCVNKWDSII 307 (419)
Q Consensus 229 ~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~~ 307 (419)
+..+.+|||||+.+ |. .....++..+|++|+|+|++++...+..+++..+...+. |+++|+||+|+.+
T Consensus 103 ~~~~~iiDtpGh~~----------f~-~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 103 KRKFIIADTPGHEQ----------YT-RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SEEEEEEECCCSGG----------GH-HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred CceEEEEECCChHH----------HH-HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 78999999999943 32 333467899999999999999988888888888877776 5999999999976
Q ss_pred h--hhHHHHHHHHHHHcCCCC----CCcEEEEeccCCCCHHHHHH
Q psy17089 308 H--NQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINSFME 346 (419)
Q Consensus 308 ~--~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~l~~ 346 (419)
. .......+++.+.+...+ ..+++++||++|.|++++++
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 2 223334455555444333 36899999999999998764
No 248
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8.7e-21 Score=169.36 Aligned_cols=152 Identities=20% Similarity=0.127 Sum_probs=106.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||++.. ......++
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 83 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFN-MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY---------RAITSAYY 83 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCC-C------CCSEEEEEEEETTEEEEEEEECCTTTTTT---------TCCCGGGT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCccch---------hhhHHHHh
Confidence 58999999999999999999986422 23345566666667778887 57889999998732 23344567
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
..+|++++|+|..++.+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. .++++||++|.|
T Consensus 84 ~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g 162 (223)
T 3cpj_B 84 RGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL-LFTETSALNSEN 162 (223)
T ss_dssp TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC-EEEECCCC-CCC
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999886433222 223333433 37899999999999765443 2233 3344 789999999999
Q ss_pred HHHHHHHHHHhcCCc
Q psy17089 151 IKNFLENILTIELPY 165 (419)
Q Consensus 151 v~~l~~~i~~~~~~~ 165 (419)
++++++.|.+.+.+.
T Consensus 163 i~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 163 VDKAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887765
No 249
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.83 E-value=1.9e-20 Score=177.38 Aligned_cols=161 Identities=16% Similarity=0.104 Sum_probs=114.8
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEE--EEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYI--LIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|||||||+++|.+.. ....+.+++.+.....+..++..+. +|||||+..... .
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 219 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-----------L 219 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT-----------T
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH-----------H
Confidence 356899999999999999999999664 3445666777666666677766555 899999954431 1
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEEcccCCChhhHHHH----------HHHHHHHcC
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRKII----------KNNIKKKLN 323 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~----------~~~~~~~~~ 323 (419)
...+++.+|++++|+|++++.+..+. .++..+... ++|+++|+||+|+......... .+.......
T Consensus 220 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 299 (332)
T 2wkq_A 220 RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 299 (332)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH
Confidence 22467889999999999998666665 355555553 8999999999999653221110 011111112
Q ss_pred CCCCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 324 FLSFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 324 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
..+..+++++||++|.|++++|+.+.+.+.
T Consensus 300 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 300 EIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 222248999999999999999999988764
No 250
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.83 E-value=1e-20 Score=165.14 Aligned_cols=153 Identities=17% Similarity=0.099 Sum_probs=103.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCC-------CCCCccceEEE--E-EEC--CeEEEEEEcCCCCCcchhhHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANY-------PGLTRDRHYGE--G-YIG--KKSFIIIDTGGFEPEVKKGIMH 70 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~-------~~~t~~~~~~~--~-~~~--~~~~~liDtpG~~~~~~~~~~~ 70 (419)
.||+|+|++|||||||++.+.+......... ...|....... + .++ +..+.+|||||++..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------- 87 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY------- 87 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC-------
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH-------
Confidence 5899999999999999988877542211100 00111111111 1 122 357889999999733
Q ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHhH----HHHHHHHHh-----cCCCEEEEEeccCCCCCCcc---hhHH-hcCC
Q psy17089 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQD----KLITNFLRK-----SGQPIVLVINKSENINSSIS---LDFY-ELGI 137 (419)
Q Consensus 71 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~----~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~ 137 (419)
......+++++|++++|+|+.++....+ ..+..|+.. .+.|+++|+||+|+...... .++. ..+.
T Consensus 88 --~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 88 --NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGK 165 (198)
T ss_dssp --SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCC
T ss_pred --HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCC
Confidence 3455567899999999999985433333 334445544 47899999999999776433 2333 3344
Q ss_pred CCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 138 GNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 138 ~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
..++++||++|.|++++++.|.+.+.+
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 478999999999999999999876643
No 251
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.83 E-value=6.5e-20 Score=162.46 Aligned_cols=146 Identities=18% Similarity=0.239 Sum_probs=101.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC---CeEEEEEEcCCCCCcchhhHHHHHHH-HHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG---KKSFIIIDTGGFEPEVKKGIMHEMTK-QTK 77 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~-~~~ 77 (419)
.++|+++|++|||||||+++|++.. +...+++++.+.. .+.++ +..+.+|||||++ ++.. ...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~ 73 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHE---------SLRFQLLD 73 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCH---------HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeE--EEEecCCCccEEEEEECCCCh---------hHHHHHHH
Confidence 3799999999999999999999764 3455555554433 36665 5789999999997 4444 455
Q ss_pred HHHHhCCEEEEEEeCCCCCCHhH----HHHHHHHHh-----cCCCEEEEEeccCCCCCCcc---hhH----Hh-------
Q psy17089 78 QAIIESDIIIFIVDGRQGLVEQD----KLITNFLRK-----SGQPIVLVINKSENINSSIS---LDF----YE------- 134 (419)
Q Consensus 78 ~~~~~~d~il~v~d~~~~~~~~~----~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~---~~~----~~------- 134 (419)
.++.++|++++|+|+.+ ..... .++.+.+.. .+.|+++|+||+|+...... .+. ..
T Consensus 74 ~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 152 (214)
T 2fh5_B 74 RFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRS 152 (214)
T ss_dssp HHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccch
Confidence 67899999999999875 22222 223333322 36899999999999866432 000 00
Q ss_pred ---------------cC-------------CCCeEEEeeccC------CCHHHHHHHHHHh
Q psy17089 135 ---------------LG-------------IGNPHIISALYG------NGIKNFLENILTI 161 (419)
Q Consensus 135 ---------------~~-------------~~~~~~vSa~~~------~~v~~l~~~i~~~ 161 (419)
.+ ...++++||++| .|++++|++|.+.
T Consensus 153 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 153 AAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 00 225799999999 9999999999864
No 252
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.1e-19 Score=158.88 Aligned_cols=151 Identities=20% Similarity=0.205 Sum_probs=105.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++... ...+..+...........++ ..+.+|||||+.. +......++
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 77 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTF--RDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQ---------FPAMQRLSI 77 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC--CCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGS---------CHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCC--CCcccCccccceeEEEEECCEEEEEEEEeCCChHH---------hHHHHHHhh
Confidence 5899999999999999999997542 22222222223333445555 3678999999873 334455678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh-----cCCCEEEEEeccCCCCCCcc----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.++|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (199)
T 2gf0_A 78 SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKC-AFMETSAKMNY 156 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCC-eEEEEecCCCC
Confidence 89999999999886432222 223333332 36899999999999864432 2222 3454 78999999999
Q ss_pred CHHHHHHHHHHhcCCc
Q psy17089 150 GIKNFLENILTIELPY 165 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~ 165 (419)
|++++++.|.+.+...
T Consensus 157 gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 157 NVKELFQELLTLETRR 172 (199)
T ss_dssp SHHHHHHHHHHHCSSS
T ss_pred CHHHHHHHHHHHHhhh
Confidence 9999999999887654
No 253
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.82 E-value=1.8e-19 Score=155.76 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=103.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|++|||||||+|+|++.. +...+.. |.+.....+.+++. .+.+|||||++ .+. ++
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~--~~~~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~-----~~ 83 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT--YVQEESP-EGGRFKKEIVVDGQSYLLLIRDEGGPP---------ELQ-----FA 83 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS--CCCCCCT-TCEEEEEEEEETTEEEEEEEEECSSSC---------CHH-----HH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCcCC-CcceEEEEEEECCEEEEEEEEECCCCh---------hhh-----ee
Confidence 589999999999999999999754 2232333 34444467778885 45679999997 222 67
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCC--CCcc-----hhHH-hcCCCCeEEEeecc
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENIN--SSIS-----LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~--~~~~-----~~~~-~~~~~~~~~vSa~~ 147 (419)
.++|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+.. .+.. .++. ..+...++++||++
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATY 163 (184)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCC
Confidence 88999999999987543333 334444433 3679999999999953 2222 2233 34434889999999
Q ss_pred CCCHHHHHHHHHHhcC
Q psy17089 148 GNGIKNFLENILTIEL 163 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~ 163 (419)
|.|++++|+.+.+.+.
T Consensus 164 ~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVV 179 (184)
T ss_dssp TBTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987654
No 254
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.82 E-value=9.5e-20 Score=183.37 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=113.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceee--------------ecCCCCccceeeeEeeEEeC-----eeEEEEeCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI--------------TYDTPGTTRDSIKSLFEYNN-----KKYILIDTAGIR 241 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~-----~~~~liDtpG~~ 241 (419)
...+|+++|++|+|||||+++|+...... .....|+|.......+.+.+ ..+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998521111 11234667766666666642 578899999995
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHH
Q psy17089 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK 321 (419)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 321 (419)
++. .....+++.+|++|+|+|++++.+.+....+..+...++|+++|+||+|+.... .....+++.+.
T Consensus 83 dF~-----------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei~~~ 150 (599)
T 3cb4_D 83 DFS-----------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEIEDI 150 (599)
T ss_dssp GGH-----------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHH
T ss_pred HHH-----------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHHHHH
Confidence 443 234467888999999999999999999888888888999999999999997643 33344555555
Q ss_pred cCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 322 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
+.. ...+++++||++|.|+++|++.+.+.++..
T Consensus 151 lg~-~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 151 VGI-DATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp TCC-CCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred hCC-CcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 532 224689999999999999999999887653
No 255
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.82 E-value=2.4e-19 Score=170.74 Aligned_cols=168 Identities=26% Similarity=0.315 Sum_probs=113.7
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
.|+++|.+|+|||||+|+|++.. ..+.+.+++|.+.....+.+++..+.+|||||+..... .+.++.|. .++..+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp-~~lve~f~--~tl~~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP-PQIVDAFF--VTLSEAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCC-GGGHHHHH--HHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCC-HHHHHHHH--HHHHHHH
Confidence 49999999999999999999986 46778899999998899999999999999999854321 23446553 4456789
Q ss_pred hcCEEEEEecCCCCC--CHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhHH--HHHHHHHHHcCCCCCCcEEEEec
Q psy17089 264 EANVVILLLDAQQNI--SAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRK--IIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~--~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
.||++++|+|++++. ..... .+.+.+.+ .+.|+++|+||+|+.+..... .....+...+. ....+++++||
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~SA 335 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY-SPIFDVIPISA 335 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC-SCEEEEEECBT
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc-CCCCcEEEEEC
Confidence 999999999998764 22222 22333433 478999999999997643111 11111222221 11246899999
Q ss_pred cCCCCHHHHHHHHHHHHhhcC
Q psy17089 336 IKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~~ 356 (419)
++|.|+++|++.|.+.+....
T Consensus 336 ~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp TTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHhcccC
Confidence 999999999999998776544
No 256
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.82 E-value=2.9e-20 Score=163.17 Aligned_cols=148 Identities=19% Similarity=0.193 Sum_probs=105.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCC-CCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANY-PGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.||+++|++|||||||+|+|++... ...+ ++++.+. ...+.+++. .+.+|||||++. +......+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~ 93 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED---------YDRLRPLS 93 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSSCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGG---------GTTTGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--CcccCCcccceE-EEEEEECCEEEEEEEEECCCchh---------HHHHHHHh
Confidence 5899999999999999999997642 2333 3333333 345667764 678999999863 22333446
Q ss_pred HHhCCEEEEEEeCCCCCCHhH--HHHHHHHHhc--CCCEEEEEeccCCCCCCc------------c-----hhHH-hcCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINSSI------------S-----LDFY-ELGI 137 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~------------~-----~~~~-~~~~ 137 (419)
+.++|++++|+|..+..+... ..+...++.. +.|+++|+||+|+..... . .++. ..+.
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCC
Confidence 789999999999886433222 3455555553 889999999999976521 1 1222 3344
Q ss_pred CCeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 138 GNPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 138 ~~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
..++++||++|.|++++++.|.+.+
T Consensus 174 ~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 174 FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 257
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=175.40 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=109.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+|+|++|||||||+|+|++.. +....+ |++.....+...+..+.+|||||++ .+......++..
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~--~~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~~ 232 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNISFTVWDVGGQD---------KIRPLWRHYFQN 232 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC--CEEEEE--ETTEEEEEEEETTEEEEEEECC--------------CCSHHHHHTT
T ss_pred ceEEEECCCCccHHHHHHHHhCCC--CCCccc--ccceEEEEEecCcEEEEEEECCCCH---------hHHHHHHHHhcc
Confidence 389999999999999999999865 333343 5666677788899999999999987 444456667899
Q ss_pred CCEEEEEEeCCCCCC--HhHHHHHHHHHhc---CCCEEEEEeccCCCCCCcchhHH-hcCC-------CCeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLV--EQDKLITNFLRKS---GQPIVLVINKSENINSSISLDFY-ELGI-------GNPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~--~~~~~~~~~l~~~---~~p~ilv~NK~Dl~~~~~~~~~~-~~~~-------~~~~~vSa~~~~ 149 (419)
+|++++|+|+.+..+ ....++...+... ++|+++|+||+|+.......++. ..+. .+++++||++|.
T Consensus 233 ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~ 312 (329)
T 3o47_A 233 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 312 (329)
T ss_dssp EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCc
Confidence 999999999975433 3335555665543 78999999999998765442211 1111 147999999999
Q ss_pred CHHHHHHHHHHhcCC
Q psy17089 150 GIKNFLENILTIELP 164 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~ 164 (419)
|++++++.|.+.+.+
T Consensus 313 gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 313 GLYEGLDWLSNQLRN 327 (329)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987764
No 258
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.82 E-value=8.4e-20 Score=165.35 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=115.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCC-CCCccceEEEEEECCeEEEEEEcCCCCCcch---hhHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYP-GLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK---KGIMHEMTKQTKQ 78 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~---~~~~~~~~~~~~~ 78 (419)
.+|+|+|++|||||||+|+|++...+.....+ ++|+++....+.+++..+.+|||||+.+... +.+.+.+...+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~ 101 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLL 101 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHh
Confidence 48999999999999999999998765444333 5899999999999999999999999975431 2223334444445
Q ss_pred HHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhc------CCCEEEEEeccCCCCCCcc-----------hhHH-hcCCCCe
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLRKS------GQPIVLVINKSENINSSIS-----------LDFY-ELGIGNP 140 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~------~~p~ilv~NK~Dl~~~~~~-----------~~~~-~~~~~~~ 140 (419)
...++|++++|+|+.+ ++..+.++.+++.+. +.|+++|.||+|+...... .++. ..+. .+
T Consensus 102 ~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~-~~ 179 (247)
T 3lxw_A 102 SAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG-RV 179 (247)
T ss_dssp HTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT-CE
T ss_pred cCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC-eE
Confidence 5599999999999875 778888878887763 7899999999999764211 1112 2333 45
Q ss_pred EEEeecc-----CCCHHHHHHHHHHhcCCc
Q psy17089 141 HIISALY-----GNGIKNFLENILTIELPY 165 (419)
Q Consensus 141 ~~vSa~~-----~~~v~~l~~~i~~~~~~~ 165 (419)
+.+++.. +.|+++|++.|.+.+++.
T Consensus 180 ~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 180 CAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 5555443 689999999999887653
No 259
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=2.9e-20 Score=160.35 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=102.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|++|||||||+|+|++... ....+ |.......+.+++..+.+|||||+.... .....++.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~ 85 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEV--VTTKP--TIGFNVETLSYKNLKLNVWDLGGQTSIR---------PYWRCYYAD 85 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEE--EEECS--STTCCEEEEEETTEEEEEEEEC----CC---------TTGGGTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCc--CccCC--cCccceEEEEECCEEEEEEECCCCHhHH---------HHHHHHhcc
Confidence 5899999999999999999997542 22222 3334456677888999999999997332 233456789
Q ss_pred CCEEEEEEeCCCCCCHh--HHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHHhcC-C----CCeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLVEQ--DKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYELG-I----GNPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~--~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~~~~-~----~~~~~vSa~~~~ 149 (419)
+|++++|+|+.++.+.. ..++...++. .+.|+++|+||+|+...... .+..... . .+++++||++|.
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 86 TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 99999999987654332 2344444432 57899999999999765433 2222111 1 157999999999
Q ss_pred CHHHHHHHHHHhcC
Q psy17089 150 GIKNFLENILTIEL 163 (419)
Q Consensus 150 ~v~~l~~~i~~~~~ 163 (419)
|+++++++|.+.+.
T Consensus 166 gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 166 GITEGLDWLIDVIK 179 (183)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987654
No 260
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.3e-19 Score=158.22 Aligned_cols=148 Identities=23% Similarity=0.215 Sum_probs=105.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+|+|++.. +...+.+++.+.....+.+++ ..+.+|||||+.. ......++
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~ 96 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR--FIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED----------TIQREGHM 96 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----------CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----------ccchhhhh
Confidence 589999999999999999999864 233343444444444566666 4578999999984 23445678
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
..+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+...+.. .++. ..+. +++++||++|.
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~g~ 175 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC-AFYECSACTGE 175 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-EEEECCTTTCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCC-eEEEECCCcCC
Confidence 89999999999886433222 222333322 47899999999999765443 2222 3444 78999999999
Q ss_pred -CHHHHHHHHHHhcC
Q psy17089 150 -GIKNFLENILTIEL 163 (419)
Q Consensus 150 -~v~~l~~~i~~~~~ 163 (419)
|++++++.|.+.+.
T Consensus 176 ~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 176 GNITEIFYELCREVR 190 (196)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 99999999987664
No 261
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.82 E-value=3.3e-20 Score=186.71 Aligned_cols=185 Identities=19% Similarity=0.200 Sum_probs=128.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceec--------------CCCCCCccceEEEEEEC-----CeEEEEEEcCCCCC
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVA--------------NYPGLTRDRHYGEGYIG-----KKSFIIIDTGGFEP 62 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~--------------~~~~~t~~~~~~~~~~~-----~~~~~liDtpG~~~ 62 (419)
.++|+|+|++|+|||||+++|+...+.+.. ...++|.......+.|. +..+.+|||||+.
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~- 82 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV- 82 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch-
Confidence 368999999999999999999863322111 12356776666666664 2678899999998
Q ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH-hcCC-
Q psy17089 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGI- 137 (419)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~- 137 (419)
.+......++..+|++++|+|+.++...+....+..+...++|+++|+||+|+...... .++. .++.
T Consensus 83 --------dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 83 --------DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGID 154 (599)
T ss_dssp --------GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC
T ss_pred --------HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCC
Confidence 44456677789999999999999988888776666666779999999999999875432 2222 2233
Q ss_pred -CCeEEEeeccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeC---CCCchhHHHHHHhCC
Q psy17089 138 -GNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGK---PNVGKSTLINSLLGE 205 (419)
Q Consensus 138 -~~~~~vSa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~---~~~GKSslin~l~~~ 205 (419)
.+++++||++|.|++++++.+.+.++.... ....+++..++.. +++|+.++++.+.|.
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~----------~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIPPPEG----------DPEGPLQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSCCCCC----------CTTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCCCccc----------cccCCceeeeeeccccccccEEEEEEEEeCE
Confidence 368999999999999999999998876421 0124455555443 889999998888765
No 262
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.82 E-value=3.9e-21 Score=171.36 Aligned_cols=154 Identities=19% Similarity=0.124 Sum_probs=106.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC-CCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNS-RDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
.||+|+|.+|||||||+|+|+.. .........++|...........+..+.+|||||+... ......++.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~ 86 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF---------GGLRDGYYI 86 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT---------SCCCHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH---------hHHHHHHHh
Confidence 58999999999999999995532 22233444454544433322223457889999998632 233445678
Q ss_pred hCCEEEEEEeCCCCCCHhH-HHHHHHHHh--cCCCEEEEEeccCCCCCCcc---hhHH-hcCCCCeEEEeeccCCCHHHH
Q psy17089 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALYGNGIKNF 154 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~~~~~~vSa~~~~~v~~l 154 (419)
++|++++|+|+.++.+... ..+...+.. .+.|+++|+||+|+...... ..+. ..+. .++++||++|.|++++
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKP 165 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTC-EEEECBGGGTBTTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 9999999999987433222 223333332 27899999999999765543 2232 3444 7899999999999999
Q ss_pred HHHHHHhcCCcc
Q psy17089 155 LENILTIELPYK 166 (419)
Q Consensus 155 ~~~i~~~~~~~~ 166 (419)
++.|.+.+...+
T Consensus 166 ~~~l~~~l~~~~ 177 (221)
T 3gj0_A 166 FLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHhCc
Confidence 999998876654
No 263
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.82 E-value=1.7e-20 Score=166.43 Aligned_cols=152 Identities=16% Similarity=0.091 Sum_probs=107.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|++|||||||+++|++.. +...+.+++.+.....+.+++ ..+.+|||||++. +......++
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 96 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC--YPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY---------YDNVRPLCY 96 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGG---------GTTTGGGGC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC--CCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHh---------HHHHHHHHc
Confidence 589999999999999999999764 344444444443344444444 5788999999873 333445567
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHhc--CCCEEEEEeccCCCCC------------Ccc-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINS------------SIS-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~Dl~~~------------~~~-----~~~~-~~~~~ 138 (419)
.++|++++|+|..+..+... ..+...++.. +.|+++|+||+|+... +.. ..+. ..+..
T Consensus 97 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 176 (214)
T 3q3j_B 97 SDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE 176 (214)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence 89999999999987544332 3444555543 7899999999999753 222 2222 44555
Q ss_pred CeEEEeeccCCC-HHHHHHHHHHhcCCc
Q psy17089 139 NPHIISALYGNG-IKNFLENILTIELPY 165 (419)
Q Consensus 139 ~~~~vSa~~~~~-v~~l~~~i~~~~~~~ 165 (419)
.++++||++|.| ++++|+.+.+.+...
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 789999999998 999999999876554
No 264
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.82 E-value=8.7e-20 Score=183.26 Aligned_cols=162 Identities=24% Similarity=0.217 Sum_probs=116.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceee--------------ecCCCCccceeeeEeeEEe---C--eeEEEEeCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI--------------TYDTPGTTRDSIKSLFEYN---N--KKYILIDTAGIR 241 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~--------------~~~~~~~t~~~~~~~~~~~---~--~~~~liDtpG~~ 241 (419)
...+|+++|++|+|||||+++|+...... .....|+|.......+.+. + ..+.||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 55799999999999999999997521100 1112456665555555554 2 578899999995
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHH
Q psy17089 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK 321 (419)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 321 (419)
++. .....+++.+|++++|+|++++.+.+....+..+...++|+++|+||+|+.... .....+++.+.
T Consensus 85 dF~-----------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~~~ 152 (600)
T 2ywe_A 85 DFS-----------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIEEV 152 (600)
T ss_dssp GGH-----------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred hHH-----------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHHHh
Confidence 543 234467889999999999999999999988888888999999999999997543 33344555554
Q ss_pred cCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 322 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
+.. ...+++++||++|.|+++|++.+.+.++..
T Consensus 153 lg~-~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 153 LGL-DPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp SCC-CGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred hCC-CcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 432 223689999999999999999999887653
No 265
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.82 E-value=1.2e-20 Score=163.90 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=107.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+++|++|||||||+|+|++... ....+ |.......+.+++..+.+|||||++... .....++.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------~~~~~~~~~ 89 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDV--VTTVP--TVGVNLETLQYKNISFEVWDLGGQTGVR---------PYWRCYFSD 89 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCC--EEECS--STTCCEEEEEETTEEEEEEEECCSSSSC---------CCCSSSSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCcCC--CCceEEEEEEECCEEEEEEECCCCHhHH---------HHHHHHhhc
Confidence 5899999999999999999987542 33333 3445566778889999999999987432 122345679
Q ss_pred CCEEEEEEeCCCCCC--HhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hhHH------hcCCCCeEEEeeccC
Q psy17089 83 SDIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFY------ELGIGNPHIISALYG 148 (419)
Q Consensus 83 ~d~il~v~d~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~~~------~~~~~~~~~vSa~~~ 148 (419)
+|++++|+|++++.+ ....++...+.. .+.|+++|+||+|+...... .+.. ..+. +++++||++|
T Consensus 90 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 168 (189)
T 2x77_A 90 TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW-TIVKSSSKTG 168 (189)
T ss_dssp CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECCTTTC
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCce-EEEEccCCCc
Confidence 999999999987533 333445555543 47899999999999876433 1111 1122 5899999999
Q ss_pred CCHHHHHHHHHHhcCC
Q psy17089 149 NGIKNFLENILTIELP 164 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~ 164 (419)
.|++++++.+.+.+.+
T Consensus 169 ~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 169 DGLVEGMDWLVERLRE 184 (189)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999987654
No 266
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=160.09 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=103.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|++|||||||+|+|++.. +...+.+++.+.......+++. .+.+|||||++... . ...++
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~-~~~~~ 89 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR--FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR---------N-CERYL 89 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC---------C-THHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcch---------h-HHHHH
Confidence 489999999999999999999864 3455555555554455666664 56799999987432 1 13467
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh------cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEee-c
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISA-L 146 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa-~ 146 (419)
.++|++++|+|..+..+... ..++..+.. .+.|+++|+||+|+...+.. .++. ..+. .++++|| +
T Consensus 90 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~ 168 (187)
T 3c5c_A 90 NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGC-LFFEVSACL 168 (187)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECCSSS
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCC-cEEEEeecC
Confidence 89999999999886432222 222233322 47899999999999765443 2232 4455 7899999 8
Q ss_pred cCCCHHHHHHHHHHhc
Q psy17089 147 YGNGIKNFLENILTIE 162 (419)
Q Consensus 147 ~~~~v~~l~~~i~~~~ 162 (419)
+|.|++++|+.+.+.+
T Consensus 169 ~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 169 DFEHVQHVFHEAVREA 184 (187)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999998765
No 267
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.82 E-value=1e-20 Score=166.56 Aligned_cols=152 Identities=20% Similarity=0.151 Sum_probs=78.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCC-ccceEEEEEECC----eEEEEEEcCCCCCcchhhHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLT-RDRHYGEGYIGK----KSFIIIDTGGFEPEVKKGIMHEMTKQTK 77 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~----~~~~liDtpG~~~~~~~~~~~~~~~~~~ 77 (419)
.+|+|+|++|||||||+|+|++....+...+.+++ .+.....+.+++ ..+.+|||||+. ++.....
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~ 91 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD---------LYKEQIS 91 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH---------HHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH---------HHHHHHH
Confidence 48999999999999999999986333444444433 466667777775 478899999996 5556677
Q ss_pred HHHHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh------cCCCEEEEEeccCCCC-CCcc-----hhHH-hcCCCCeEEE
Q psy17089 78 QAIIESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENIN-SSIS-----LDFY-ELGIGNPHII 143 (419)
Q Consensus 78 ~~~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~Dl~~-~~~~-----~~~~-~~~~~~~~~v 143 (419)
.++.++|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+.. .+.. .++. ..+. +++++
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~-~~~~~ 170 (208)
T 2yc2_C 92 QYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTL-DFFDV 170 (208)
T ss_dssp TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTC-EEEEC
T ss_pred HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCC-EEEEe
Confidence 77889999999999986433222 233333333 3789999999999987 4333 2333 4454 78999
Q ss_pred eecc-CCCHHHHHHHHHHhcCC
Q psy17089 144 SALY-GNGIKNFLENILTIELP 164 (419)
Q Consensus 144 Sa~~-~~~v~~l~~~i~~~~~~ 164 (419)
||++ |.|++++++.|.+.+.+
T Consensus 171 Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 171 SANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp CC-------CHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHHH
Confidence 9999 99999999999887654
No 268
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2.8e-20 Score=164.09 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=104.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++... ...+.+++.+.....+.+++. .+.+|||||++... .....++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~ 94 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD---------RLRPLSY 94 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC--C-------CCEEEEEEEETTEEEEEEEEECTTCTTCT---------TTGGGGC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC--CCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH---------HHHHhhc
Confidence 5899999999999999999998642 233333444444445667774 67899999987432 2334467
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHhc--CCCEEEEEeccCCCCCCc------------c-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~------------~-----~~~~-~~~~~ 138 (419)
.++|++++|+|..+..+... ..+...++.. +.|+++|+||+|+..... . ..+. ..+..
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (207)
T 2fv8_A 95 PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAY 174 (207)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCC
Confidence 89999999999886432222 3455555553 889999999999976521 1 1111 23444
Q ss_pred CeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 139 NPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
.++++||++|.|++++++.|.+.+..
T Consensus 175 ~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 175 DYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999887643
No 269
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.82 E-value=5.1e-21 Score=164.85 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=98.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+++|++.. +...+.+++.+.....+.+++. .+.+|||||++.. ......++
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 77 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY---------NRLRPLSY 77 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC--CC----------CBCCCC-------CEEECCCC-CTT---------TTTGGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhh---------hhhHHhhc
Confidence 689999999999999999999754 2334444444333333344443 4559999998732 23344567
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCCCc-----------c----hhHH-hcCCCCe
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSI-----------S----LDFY-ELGIGNP 140 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~-----------~----~~~~-~~~~~~~ 140 (419)
.++|++++|+|+.++.+... ..+...++. .+.|+++|+||+|+..... . .++. ..+..++
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 157 (182)
T 3bwd_D 78 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAY 157 (182)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEE
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEE
Confidence 89999999999886433332 234555554 3789999999999876532 1 2222 3454478
Q ss_pred EEEeeccCCCHHHHHHHHHHhcC
Q psy17089 141 HIISALYGNGIKNFLENILTIEL 163 (419)
Q Consensus 141 ~~vSa~~~~~v~~l~~~i~~~~~ 163 (419)
+++||++|.|++++++.+.+.+.
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987654
No 270
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.82 E-value=4.7e-20 Score=161.17 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=103.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE---CCeEEEEEEcCCCCCcchhhHHHHHHHHH--
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI---GKKSFIIIDTGGFEPEVKKGIMHEMTKQT-- 76 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~-- 76 (419)
..||+++|++|||||||++++.+.... ....+.+.........+ ....+.+|||||++... ...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~ 88 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSP--NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF---------DPTFD 88 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCG--GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT---------CTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCC--cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHH---------hhhhh
Confidence 369999999999999999999985322 22222222222222333 23689999999997432 222
Q ss_pred -HHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCc-------c-----hhHHh----
Q psy17089 77 -KQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK-----SGQPIVLVINKSENINSSI-------S-----LDFYE---- 134 (419)
Q Consensus 77 -~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~-------~-----~~~~~---- 134 (419)
..+++++|++++|+|+.+++......+..++.. .+.|+++|+||+|+..... . .++..
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 456789999999999998644555666666664 3789999999999876321 1 11222
Q ss_pred -cCCCCeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 135 -LGIGNPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 135 -~~~~~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
.+. .++++||++ .|++++|+.+.+.+
T Consensus 169 ~~~~-~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHL-SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCE-EEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCc-ceEEEEech-hhHHHHHHHHHHHh
Confidence 222 679999999 99999999998754
No 271
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.82 E-value=2.8e-19 Score=175.00 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=113.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecC------------------------------CCCCCccceEEEEEECCeEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN------------------------------YPGLTRDRHYGEGYIGKKSF 52 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~ 52 (419)
.+|+++|++|+|||||+|+|++....+... .+++|++.....+...+..+
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~ 97 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHF 97 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEE
Confidence 489999999999999999997654332221 25789999888899999999
Q ss_pred EEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HhHHHHHHHHHhcCCC-EEEEEeccCCC
Q psy17089 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLV-------EQDKLITNFLRKSGQP-IVLVINKSENI 124 (419)
Q Consensus 53 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 124 (419)
.+|||||+. ++...+..++..+|++++|+|+.++.. .+..+.+..+...++| +++|+||+|+.
T Consensus 98 ~iiDTPGh~---------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 98 TILDAPGHK---------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred EEEECCChH---------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 999999997 677778888999999999999998764 4667777777778888 99999999996
Q ss_pred CCCc-------c----hhHH-hcCC-----CCeEEEeeccCCCHHHHHH
Q psy17089 125 NSSI-------S----LDFY-ELGI-----GNPHIISALYGNGIKNFLE 156 (419)
Q Consensus 125 ~~~~-------~----~~~~-~~~~-----~~~~~vSa~~~~~v~~l~~ 156 (419)
.... . .+++ ..++ .+++++||++|.|++++.+
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 4321 1 1222 2333 2589999999999998544
No 272
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.82 E-value=1.3e-20 Score=166.74 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=110.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+++|++.. +...+.+++.+.....+.+++ ..+.+|||||++... .....++
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~ 78 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS---------RLRPLSY 78 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCC---------C--CGGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC--CCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHH---------HHHHhhc
Confidence 589999999999999999999754 344555555555555566666 478899999997432 2334468
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHhc--CCCEEEEEeccCCCCCCc---------c----hhHH-hcCCCCeEE
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINSSI---------S----LDFY-ELGIGNPHI 142 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~---------~----~~~~-~~~~~~~~~ 142 (419)
.++|++++|+|..++.+... ..+...++.. +.|+++|+||+|+..... . .++. ..+..++++
T Consensus 79 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (212)
T 2j0v_A 79 RGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIE 158 (212)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEE
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEE
Confidence 89999999999886433322 2345555543 789999999999876532 1 2222 345457899
Q ss_pred EeeccCCCHHHHHHHHHHhcCCc
Q psy17089 143 ISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 143 vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
+||++|.|++++++.+.+.+.+.
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 159 CSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCC
T ss_pred ccCCCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999877654
No 273
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.81 E-value=2.1e-19 Score=155.80 Aligned_cols=159 Identities=26% Similarity=0.357 Sum_probs=105.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcch--hhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK--KGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~ 79 (419)
+++|+++|++|||||||+|+|++.. +.....+++|.+.... .+. .+.+|||||+..... ....+.+......+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEE--ecC--CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999875 4455667777766543 333 789999999753211 11122344444444
Q ss_pred H----HhCCEEEEEEeCCCCC-----------CHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc--hhHH-hcCCC---
Q psy17089 80 I----IESDIIIFIVDGRQGL-----------VEQDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFY-ELGIG--- 138 (419)
Q Consensus 80 ~----~~~d~il~v~d~~~~~-----------~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~--~~~~-~~~~~--- 138 (419)
+ ..++++++|+|..... ...+..+...+...+.|+++|+||+|+...... .++. .++..
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 155 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE 155 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhc
Confidence 4 4466777777764310 111122344555568999999999999876422 2222 33432
Q ss_pred ---CeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 139 ---NPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 139 ---~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
.++++||++|.|++++++.+.+.+.+.
T Consensus 156 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 156 IDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 369999999999999999999876543
No 274
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.81 E-value=2.2e-20 Score=165.96 Aligned_cols=154 Identities=19% Similarity=0.102 Sum_probs=102.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC-C--eEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-K--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.+|+|+|++|||||||+|+|++.... ....++.+.+......... + ..+.+|||||+.... .....+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~ 81 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA---------VLKDVY 81 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS---------CCCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc---------hHHHHH
Confidence 58999999999999999999975422 1111222222222222222 2 578899999987322 233456
Q ss_pred HHhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHHhcCCCCeEEEeeccCCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGNG 150 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~vSa~~~~~ 150 (419)
+.++|++++|+|+.++.+..+ ..++..+.. .+.|+++|+||+|+...+.. .++......+++++||++|.|
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 788999999999987543333 223333332 36899999999999876544 122222223789999999999
Q ss_pred HHHHHHHHHHhcCCcc
Q psy17089 151 IKNFLENILTIELPYK 166 (419)
Q Consensus 151 v~~l~~~i~~~~~~~~ 166 (419)
++++++.|.+.+....
T Consensus 162 v~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 162 FGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998876654
No 275
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.81 E-value=1.2e-21 Score=194.19 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=124.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE-eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~ 259 (419)
++++|+++|++|+|||||+++|.+... .....+|+|.+.....+.+ ++..+.||||||+..+.... .
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~-----------~ 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR-----------A 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB-----------B
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH-----------H
Confidence 467899999999999999999997653 3446778888877777766 56789999999997665321 2
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHH---cCCC-CCCcEEEEec
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK---LNFL-SFAMFNFISA 335 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~SA 335 (419)
.+++.+|++++|+|++++...+..+.+..+...++|+++|+||+|+.+.... .....+... ...+ ...+++++||
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~~~~~~iv~vSA 149 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDYGGDVQAVHVSA 149 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCSSSSEEECCCCS
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH-HHHHHHHhhhhhHHhcCCCceEEEEEC
Confidence 4667899999999999999999999999999999999999999999643211 011111111 1111 2358999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q psy17089 336 IKLNNINSFMESINHVYDS 354 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (419)
++|.|+++|++.+...+..
T Consensus 150 ktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 150 LTGENMMALAEATIALAEM 168 (537)
T ss_dssp SSSCSSHHHHHHHHHHHTT
T ss_pred CCCCCchhHHHHHHHhhhc
Confidence 9999999999999987654
No 276
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.81 E-value=1.4e-19 Score=169.22 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=117.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE-CCeEEEEEEcCCCCCcchhhHHHH-HHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHE-MTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~-~~~~~~~~~ 80 (419)
.||+++|++|||||||+|+|++.....++..+++|++.......+ ++..+.+|||||++.. .+. +......++
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDHIF 78 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHHHh
Confidence 589999999999999999999875566667888999988888877 5678999999998621 111 134566778
Q ss_pred HhCCEEEEEEeCCCCCCHhHH-HHHHHHHh-----cCCCEEEEEeccCCCC--CCc----c-----hhHH-hcCC--CCe
Q psy17089 81 IESDIIIFIVDGRQGLVEQDK-LITNFLRK-----SGQPIVLVINKSENIN--SSI----S-----LDFY-ELGI--GNP 140 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~-~~~~~l~~-----~~~p~ilv~NK~Dl~~--~~~----~-----~~~~-~~~~--~~~ 140 (419)
+++|++++|+|+.+..+..+. .+.+++.. .+.|+++|+||+|+.. .+. . .++. ..|. .++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 899999999999876554442 33333433 3789999999999987 332 1 2222 3342 478
Q ss_pred EEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 141 HIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 141 ~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
+++||++ .++.+++..+...+.+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred EEeeecC-ChHHHHHHHHHHHHcCC
Confidence 9999999 78989998888765543
No 277
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.81 E-value=2.7e-20 Score=175.51 Aligned_cols=162 Identities=22% Similarity=0.236 Sum_probs=119.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC-eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
+++|+|+|.+|||||||+|+|++... .+.+++++|.++....+.+++ ..+.+|||||+.+...+ .+.+...+...+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~--~~~l~~~fl~~i 234 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ--GVGLGHQFLRHI 234 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC--TTTTHHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccc--cchhHHHHHHHH
Confidence 36899999999999999999998653 467888999999988888876 89999999998532100 011233455667
Q ss_pred HhCCEEEEEEeCCC---CCCHhH-HHHHHHHHh-----cCCCEEEEEeccCCCCCCcc-hhHH-hcCC-CCeEEEeeccC
Q psy17089 81 IESDIIIFIVDGRQ---GLVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS-LDFY-ELGI-GNPHIISALYG 148 (419)
Q Consensus 81 ~~~d~il~v~d~~~---~~~~~~-~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~-~~~~-~~~~-~~~~~vSa~~~ 148 (419)
..++++++|+|+++ .....+ ..+...+.. .++|+++|+||+|+....+. .++. .+.. .+++++||+++
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCC
Confidence 88999999999875 222222 445555654 37899999999999865443 2222 2221 37899999999
Q ss_pred CCHHHHHHHHHHhcCCcc
Q psy17089 149 NGIKNFLENILTIELPYK 166 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~~~ 166 (419)
.|++++++.|.+.+.+.+
T Consensus 315 ~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 315 EGLRELLFEVANQLENTP 332 (342)
T ss_dssp STTHHHHHHHHHHHTSCC
T ss_pred cCHHHHHHHHHHHHhhCc
Confidence 999999999999887653
No 278
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=5.6e-19 Score=155.91 Aligned_cols=172 Identities=21% Similarity=0.302 Sum_probs=110.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCc-eeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHH--
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVI-- 256 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~-- 256 (419)
....+|+++|++|||||||+|+|++.. ...+.+.+|++... ..+.+++ .+.+|||||+.......+..+.|...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 356799999999999999999999875 34456677777653 2334444 78899999985421111111223211
Q ss_pred HHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCC-CCcEEEEec
Q psy17089 257 KTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLS-FAMFNFISA 335 (419)
Q Consensus 257 ~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SA 335 (419)
........++++++++|++.+.+..+.++..++...+.|+++|.||+|+.+..........+...+.... ...++++||
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 180 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSS 180 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBT
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEee
Confidence 1112235789999999999988877767777777889999999999999876543322233333333222 357899999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q psy17089 336 IKLNNINSFMESINHVYDS 354 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (419)
+++.|++++++.+.+....
T Consensus 181 l~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 181 LKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TTTBSHHHHHHHHHHHHC-
T ss_pred cCCCCHHHHHHHHHHHHhh
Confidence 9999999999999887654
No 279
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.81 E-value=2.3e-19 Score=168.71 Aligned_cols=191 Identities=17% Similarity=0.202 Sum_probs=116.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCce-----eeecCCCC---ccce---------------------------------
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENR-----VITYDTPG---TTRD--------------------------------- 219 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~-----~~~~~~~~---~t~~--------------------------------- 219 (419)
..++|+++|.+|+|||||+|+|+|... ..+...|+ ++..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 557999999999999999999999865 22223331 1111
Q ss_pred -----------------eeeEe-eEEeCeeEEEEeCCCCCCCCc--chHHHHHHHHHHHHHHHhhcCEEEEEecC-CCCC
Q psy17089 220 -----------------SIKSL-FEYNNKKYILIDTAGIRRRNK--TFEVIEKFSVIKTLKSILEANVVILLLDA-QQNI 278 (419)
Q Consensus 220 -----------------~~~~~-~~~~~~~~~liDtpG~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~i~v~d~-~~~~ 278 (419)
..... ....+.++.+|||||+.+... ....++++....+..+++.+|++++|+|+ +.+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 00000 111346899999999965220 00112333445667899999999999997 4444
Q ss_pred CHHH-HHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCC--CCCCcEEEEeccC---CCCHHHHHHHHHHHH
Q psy17089 279 SAQD-INIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF--LSFAMFNFISAIK---LNNINSFMESINHVY 352 (419)
Q Consensus 279 ~~~~-~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~---g~gv~~l~~~i~~~~ 352 (419)
...+ ..+++.+...+.|+++|+||+|+...... ..+.+...+.. ..+.++..+||.+ +.|+.++++.+.+.+
T Consensus 183 ~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 183 ANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp TTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 4333 46777777789999999999999764431 11222222222 2233445556666 789999999998887
Q ss_pred hhcC------CCCCHHHHHHHHHHHHH
Q psy17089 353 DSSI------IHLSTSRITRALISAIK 373 (419)
Q Consensus 353 ~~~~------~~~~~~~l~~~l~~~~~ 373 (419)
+... .+.++..++.++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~l~~~lre~l~ 287 (315)
T 1jwy_B 261 KNHPIYKSIANRSGTAYLSKTLNKLLM 287 (315)
T ss_dssp HTCTTGGGSGGGCSHHHHHHHHHHHHH
T ss_pred hCCCccccchhccCHHHHHHHHHHHHH
Confidence 6532 23345556666666544
No 280
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=4e-21 Score=194.29 Aligned_cols=153 Identities=27% Similarity=0.344 Sum_probs=93.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceee------------------------------ecCCCCccceeeeEeeEEeC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVI------------------------------TYDTPGTTRDSIKSLFEYNN 229 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~ 229 (419)
...++|+++|++|+|||||+|+|++..... ....+|+|++.....+..++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 467899999999999999999997421111 11256889988888888888
Q ss_pred eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCC-------CHHHHHHHHHHHHcCCc-EEEEEE
Q psy17089 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-------SAQDINIANFIYESGRS-LIVCVN 301 (419)
Q Consensus 230 ~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~-------~~~~~~~~~~~~~~~~~-~iiv~N 301 (419)
..+.||||||+.++.. .+..++..+|++|+|+|++++. ..+..+++..+...++| +|+|+|
T Consensus 255 ~~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviN 323 (592)
T 3mca_A 255 KIYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVN 323 (592)
T ss_dssp ----CCEEESSSEEEE-----------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEE
T ss_pred eEEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEe
Confidence 8999999999976542 1234667899999999999854 56777788888888887 999999
Q ss_pred cccCCC--hhhHHHHHHHHHHHc-CCCCC----CcEEEEeccCCCCHHH
Q psy17089 302 KWDSII--HNQRKIIKNNIKKKL-NFLSF----AMFNFISAIKLNNINS 343 (419)
Q Consensus 302 K~Dl~~--~~~~~~~~~~~~~~~-~~~~~----~~~~~~SA~~g~gv~~ 343 (419)
|+|+.+ ..........+...+ ...+. ++++++||++|.|+.+
T Consensus 324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e 372 (592)
T 3mca_A 324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372 (592)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCS
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccc
Confidence 999975 344455566666666 43332 4799999999999973
No 281
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.81 E-value=1.5e-20 Score=164.94 Aligned_cols=151 Identities=16% Similarity=0.102 Sum_probs=105.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC--CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG--KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
++|+|+|.+|||||||+|+|++... ...+.+++.+.......++ +..+.+|||||+.... .....++
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~ 93 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEF--SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS---------ILPYSFI 93 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC--CSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTC---------CCCGGGT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEECCCccchH---------HHHHHHH
Confidence 5899999999999999999998642 3444444444334444433 4677899999987432 2344567
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh----cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~ 149 (419)
.++|++++|+|+.+..+... ..+...+.. .++|+++|+||+|+...+.. ..+. ..+. +++++||++|.
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 172 (201)
T 3oes_A 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA-TFMESSARENQ 172 (201)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECCTTCHH
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC-eEEEEeCCCCC
Confidence 89999999999886322221 222233322 37899999999999866544 2222 3455 78999999999
Q ss_pred CHHHHHHHHHHhcCCc
Q psy17089 150 GIKNFLENILTIELPY 165 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~ 165 (419)
|++++|+.|.+.+.+.
T Consensus 173 ~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 173 LTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999877544
No 282
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.8e-20 Score=188.60 Aligned_cols=155 Identities=22% Similarity=0.308 Sum_probs=114.8
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecC------------------------------CCCccceeeeEeeEEeC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYD------------------------------TPGTTRDSIKSLFEYNN 229 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~ 229 (419)
...++|+++|++|+|||||+|+|++........ .+|+|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 357899999999999999999999763322211 26888888888888888
Q ss_pred eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCC-------CCHHHHHHHHHHHHcCCc-EEEEEE
Q psy17089 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-------ISAQDINIANFIYESGRS-LIVCVN 301 (419)
Q Consensus 230 ~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~-------~~~~~~~~~~~~~~~~~~-~iiv~N 301 (419)
..+.||||||+.+ |. ..+..+++.||++|+|+|++++ ...+..+.+..+...+.| +|+|+|
T Consensus 245 ~~~~iiDTPG~e~----------f~-~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvN 313 (611)
T 3izq_1 245 ANFTIVDAPGHRD----------FV-PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 313 (611)
T ss_dssp CEEEEEECCSSSC----------HH-HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEE
T ss_pred ceEEEEECCCCcc----------cH-HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEe
Confidence 9999999999943 32 4445678899999999999975 234556666677777755 999999
Q ss_pred cccCCCh--hhHHHHHHHHHHHcCCC----CCCcEEEEeccCCCCHHHHH
Q psy17089 302 KWDSIIH--NQRKIIKNNIKKKLNFL----SFAMFNFISAIKLNNINSFM 345 (419)
Q Consensus 302 K~Dl~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~g~gv~~l~ 345 (419)
|+|+.+. .......+.+...+... ..++++++||++|.|++++.
T Consensus 314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 9999862 22333344444333222 14689999999999998763
No 283
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.81 E-value=1.6e-19 Score=166.34 Aligned_cols=159 Identities=17% Similarity=0.143 Sum_probs=100.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecC-------CCCCCccceEEEEEECCe--EEEEEEcCCCCCcc-----hhhH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN-------YPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEV-----KKGI 68 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~-----~~~~ 68 (419)
++|+|+|.+|+|||||+|+|++........ .++++.+.....+..+|. .+.+|||||+.+.. ...+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 589999999999999999999876543332 334555555445555553 88999999995431 1223
Q ss_pred HHHHHHHHHHHHHh-------------CCEEEEEEeCC-CCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcch----
Q psy17089 69 MHEMTKQTKQAIIE-------------SDIIIFIVDGR-QGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISL---- 130 (419)
Q Consensus 69 ~~~~~~~~~~~~~~-------------~d~il~v~d~~-~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~---- 130 (419)
.+.+..+...++.. +|++++++++. .++...+.++++.+.. ++|+++|+||+|+....+..
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~ 167 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKK 167 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHH
Confidence 33344445555655 77888888654 4788888888998887 89999999999997655431
Q ss_pred ---hHH-hcCCCCeEEEeeccCCCHHHHHHHHHHhcC
Q psy17089 131 ---DFY-ELGIGNPHIISALYGNGIKNFLENILTIEL 163 (419)
Q Consensus 131 ---~~~-~~~~~~~~~vSa~~~~~v~~l~~~i~~~~~ 163 (419)
+.. ..+. +++++||+++.|++++++.|.+.+|
T Consensus 168 ~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 168 QIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHTTC-CCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCCC
Confidence 111 3444 6889999999999999999987655
No 284
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.80 E-value=2.8e-19 Score=165.52 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=104.5
Q ss_pred EEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (419)
||+++|.+|||||||++++.+..........+.|.......+. ...++.+||||||.++... .+ ....+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~-----~l---~~~~yyr 71 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP-----SY---DSERLFK 71 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC-----SH---HHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch-----hh---hhhhhcc
Confidence 6899999999999999998765321111112233322222221 2368999999999665310 00 1236889
Q ss_pred hcCEEEEEecCCCCCCHHHHHHH-HHH---HH--cCCcEEEEEEcccCCChhhH----HHHHHHHHHHcCCC----CCCc
Q psy17089 264 EANVVILLLDAQQNISAQDINIA-NFI---YE--SGRSLIVCVNKWDSIIHNQR----KIIKNNIKKKLNFL----SFAM 329 (419)
Q Consensus 264 ~ad~~i~v~d~~~~~~~~~~~~~-~~~---~~--~~~~~iiv~NK~Dl~~~~~~----~~~~~~~~~~~~~~----~~~~ 329 (419)
+|+++|+|+|+++. ......++ +++ .+ .+.|+++|+||+|+.++..+ ..+..+..+.++.. .+++
T Consensus 72 ~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~ 150 (331)
T 3r7w_B 72 SVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS 150 (331)
T ss_dssp TCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred CCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence 99999999999987 33444333 222 22 47999999999999865432 23334444455543 3578
Q ss_pred EEEEeccCCCCHHHHHHHHHHHH
Q psy17089 330 FNFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 330 ~~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
++++||++ .||.+.|..+.+.+
T Consensus 151 f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 151 FYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp EECCCSSS-SHHHHHHHHHHTTS
T ss_pred EEEeccCC-CcHHHHHHHHHHHH
Confidence 99999998 58999999888654
No 285
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.80 E-value=1.6e-21 Score=170.94 Aligned_cols=151 Identities=20% Similarity=0.127 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.+|||||+.... .....++
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~ 103 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR---------TITSSYY 103 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC---------CCSCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH---------HHHHHHh
Confidence 589999999999999999999754 2233345667777777888887 468899999987332 2334467
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.++|++++|+|+.+..+... ..++..+.. .+.|+++|+||+|+...+.. ..+. ..+. +++++||++|.|
T Consensus 104 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSA~~g~g 182 (199)
T 3l0i_B 104 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLETSAKNATN 182 (199)
T ss_dssp CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTC-CBCCCCC---HH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCC-eEEEEECCCCCC
Confidence 89999999999887433222 223333333 27899999999999766543 2333 3444 789999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.|.+.+.+
T Consensus 183 v~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 183 VEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876654
No 286
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.80 E-value=5.7e-19 Score=168.71 Aligned_cols=160 Identities=31% Similarity=0.374 Sum_probs=116.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|+++|.+|||||||+|+|++.. ..+...+++|.+.....+...+..+.+|||||+.+........-...........
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 246 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYL 246 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhc
Confidence 589999999999999999999875 4466778889988888888888999999999996543211111111222233456
Q ss_pred CCEEEEEEeCCCCC--CHh-HHHHHHHHHh-c-CCCEEEEEeccCCCCCCcc---hhHH-hcCCCCeEEEeeccCCCHHH
Q psy17089 83 SDIIIFIVDGRQGL--VEQ-DKLITNFLRK-S-GQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALYGNGIKN 153 (419)
Q Consensus 83 ~d~il~v~d~~~~~--~~~-~~~~~~~l~~-~-~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~~~~~~vSa~~~~~v~~ 153 (419)
+|++++|+|+.... ... ...+...+.. . ++|+++|+||+|+...... .++. ..+. +++++||++|.|+++
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~iSA~~g~gi~~ 325 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGL-NPIKISALKGTGIDL 325 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTC-CCEECBTTTTBTHHH
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCC-CeEEEeCCCCcCHHH
Confidence 99999999977543 222 2344444443 3 8999999999999865543 2222 2333 789999999999999
Q ss_pred HHHHHHHhcCC
Q psy17089 154 FLENILTIELP 164 (419)
Q Consensus 154 l~~~i~~~~~~ 164 (419)
+++.+.+.+..
T Consensus 326 l~~~i~~~l~~ 336 (357)
T 2e87_A 326 VKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 287
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.80 E-value=1.6e-19 Score=178.70 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=117.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCC------ceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRD------ALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQT 76 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 76 (419)
++|+++|++|+|||||+|+|++... ......+++|.+..+..+.+++..+.+|||||+. .+...+
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~---------~~~~~~ 90 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA---------DLIRAV 90 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH---------HHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH---------HHHHHH
Confidence 5899999999999999999998651 2233456789888888888899999999999986 666777
Q ss_pred HHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-------hhHH-hc-C--CCCeEEEee
Q psy17089 77 KQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFY-EL-G--IGNPHIISA 145 (419)
Q Consensus 77 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-------~~~~-~~-~--~~~~~~vSa 145 (419)
...+..+|++++|+|+.++..++..+.+.+++..++|+++|+||+|+...... .+++ .. + ..+++++||
T Consensus 91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp HHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred HHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 88899999999999999988888888888888889999999999999864321 1222 22 2 247899999
Q ss_pred ccCCCHHHHHHHHHHhcC
Q psy17089 146 LYGNGIKNFLENILTIEL 163 (419)
Q Consensus 146 ~~~~~v~~l~~~i~~~~~ 163 (419)
++|.|+++|++.|.+.++
T Consensus 171 ~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 171 KTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhc
Confidence 999999999999988653
No 288
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.80 E-value=1.3e-19 Score=180.42 Aligned_cols=117 Identities=19% Similarity=0.281 Sum_probs=97.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCce---------------ec------CCCCCCccceEEEEEECCeEEEEEEcCCC
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDAL---------------VA------NYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~---------------~~------~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 60 (419)
+++|+|+|++|+|||||+|+|++..+.+ .. ..+++|.......+.+.+..+.+|||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4789999999999999999997322111 11 12577888888889999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCC
Q psy17089 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS 127 (419)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~ 127 (419)
.+. ...+..+++.+|++++|+|+.++.......++..+...++|+++|+||+|+....
T Consensus 93 ~df---------~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 93 ADF---------TEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp TTC---------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC
T ss_pred hhH---------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 843 3456778899999999999999999999888898888899999999999997654
No 289
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=3.1e-19 Score=166.58 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=111.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCc-----eecCCCC----------------------CCccce-------------
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDA-----LVANYPG----------------------LTRDRH------------- 41 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~-----~~~~~~~----------------------~t~~~~------------- 41 (419)
.|+|+|+|++|||||||+|+|+|.... .++..|+ +|++..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 379999999999999999999987643 2233343 333310
Q ss_pred ----------EEEEEEC-CeEEEEEEcCCCCCcc----hhhHHHHHHHHHHHHHHhCCEEE-EEEeCCCCCCHhHH-HHH
Q psy17089 42 ----------YGEGYIG-KKSFIIIDTGGFEPEV----KKGIMHEMTKQTKQAIIESDIII-FIVDGRQGLVEQDK-LIT 104 (419)
Q Consensus 42 ----------~~~~~~~-~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~~d~il-~v~d~~~~~~~~~~-~~~ 104 (419)
...+... +..+.+|||||+.... .+...+.+...+..++..++.++ +|+|+...+...+. .++
T Consensus 106 ~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~ 185 (299)
T 2aka_B 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 185 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred cCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHH
Confidence 0111111 3689999999987432 23444466677788888888666 79999887666653 567
Q ss_pred HHHHhcCCCEEEEEeccCCCCCCcc-hhHHh-----c--CCCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 105 NFLRKSGQPIVLVINKSENINSSIS-LDFYE-----L--GIGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 105 ~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~-----~--~~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
+.+...+.|+++|+||+|+...... .+... . +..+++++||++|.|++++++.+.+
T Consensus 186 ~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 186 KEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 7776678999999999999876542 22221 1 2235688999999999999999886
No 290
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.79 E-value=1.4e-19 Score=177.31 Aligned_cols=155 Identities=25% Similarity=0.291 Sum_probs=106.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceee------------------------------ecCCCCccceeeeEeeEEeCe
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI------------------------------TYDTPGTTRDSIKSLFEYNNK 230 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~ 230 (419)
..++|+++|++|+|||||+++|++..... .....|+|.+.....+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 56899999999999999999998531000 011457788777777777788
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCC-------CCHHHHHHHHHHHHcCC-cEEEEEEc
Q psy17089 231 KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-------ISAQDINIANFIYESGR-SLIVCVNK 302 (419)
Q Consensus 231 ~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~-------~~~~~~~~~~~~~~~~~-~~iiv~NK 302 (419)
.+.+|||||+.+ |. .....+++.+|++|+|+|++++ ...+..+++..+...+. ++++|+||
T Consensus 85 ~~~iiDtpG~~~----------f~-~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK 153 (435)
T 1jny_A 85 FFTIIDAPGHRD----------FV-KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 153 (435)
T ss_dssp EEEECCCSSSTT----------HH-HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred EEEEEECCCcHH----------HH-HHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence 999999999944 32 3345688999999999999986 33355666777777776 59999999
Q ss_pred ccCCCh----hhHHHHHHHHHHHcCCCC----CCcEEEEeccCCCCHHHHHH
Q psy17089 303 WDSIIH----NQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINSFME 346 (419)
Q Consensus 303 ~Dl~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~l~~ 346 (419)
+|+.+. .......+++.+.+...+ .++++++||++|.|+.++++
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 999762 223344455554443332 37899999999999987754
No 291
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=6.1e-21 Score=189.22 Aligned_cols=188 Identities=19% Similarity=0.261 Sum_probs=137.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE-CCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.|+|+++|++|+|||||+++|.+.... ....+++|.+.....+.+ ++..+.+|||||+... .......+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f---------~~~~~~~~ 73 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAF---------SAMRARGT 73 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCT---------TTSBBSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHH---------HHHHHHHH
Confidence 589999999999999999999975422 345678898888777776 5678999999999743 23344567
Q ss_pred HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHHhcC--------CCCeEEEeeccCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYELG--------IGNPHIISALYGN 149 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~--------~~~~~~vSa~~~~ 149 (419)
..+|++++|+|+.++..++..+.+..+...+.|+++|+||+|+...... .+....+ ..+++++||++|.
T Consensus 74 ~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~ 153 (537)
T 3izy_P 74 QVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGE 153 (537)
T ss_dssp BSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSC
T ss_pred ccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCC
Confidence 8899999999999999999988888888889999999999999754432 2222211 1257899999999
Q ss_pred CHHHHHHHHHHhcCCcchhcc-ccc-------cccccccceeEEEEEeCCCCchhHHH
Q psy17089 150 GIKNFLENILTIELPYKKFFK-KKE-------FTNIHSIEYIKVAIVGKPNVGKSTLI 199 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~~~~~~-~~~-------~~~~~~~~~~~i~l~G~~~~GKSsli 199 (419)
|+++|++.+...+...+.... ..+ ........++..+.++.+..+|+..+
T Consensus 154 GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 154 NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 999999999876543211000 000 00111234567778888777777654
No 292
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=2.1e-19 Score=179.56 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=112.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+|+|++|||||||+|+|++.. ++... .|++.....+.+.+..+.+|||||++. +......++.+
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~--~~~~~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~~ 389 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ--SVTTI--PTVGFNVETVTYKNVKFNVWDVGGQDK---------IRPLWRHYYTG 389 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS--CCCCC--CCSSEEEEEEESSSCEEEEEEECCCGG---------GSGGGGGGGTT
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC--CCCcC--CccceeEEEEEeCCEEEEEEECCCcHH---------HHHHHHHHhcc
Confidence 489999999999999999999865 33333 477777778888899999999999873 33345567899
Q ss_pred CCEEEEEEeCCCCCC--HhHHHHHHHHHh---cCCCEEEEEeccCCCCCCcchhHH-hcCC-------CCeEEEeeccCC
Q psy17089 83 SDIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGI-------GNPHIISALYGN 149 (419)
Q Consensus 83 ~d~il~v~d~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~-------~~~~~vSa~~~~ 149 (419)
+|++++|+|+.++.+ ....++..+++. .++|+++|+||+|+.......+.. .++. .+++++||++|.
T Consensus 390 ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 469 (497)
T 3lvq_E 390 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 469 (497)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCC
Confidence 999999999887533 233455555443 478999999999997654432211 1111 148999999999
Q ss_pred CHHHHHHHHHHhcCCcc
Q psy17089 150 GIKNFLENILTIELPYK 166 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~~ 166 (419)
|+++++++|.+.+....
T Consensus 470 gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 470 GLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp THHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 99999999998876653
No 293
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.79 E-value=1.2e-19 Score=156.86 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=102.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|++.. +...+.++..+.....+.+++ ..+.+|||||++.. ......++
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 76 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC--FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY---------DNVRPLSY 76 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG---------TTTGGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhh---------hhhHHhhc
Confidence 589999999999999999999754 223333333333333445554 46789999998632 22334467
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCC------------Ccc-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINS------------SIS-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~------------~~~-----~~~~-~~~~~ 138 (419)
.++|++++|+|..++.+... ..+...++. .+.|+++|+||+|+... +.. .++. ..+..
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (184)
T 1m7b_A 77 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA 156 (184)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCc
Confidence 89999999999886433332 233444444 37899999999999742 112 2233 34544
Q ss_pred CeEEEeec-cCCCHHHHHHHHHHhc
Q psy17089 139 NPHIISAL-YGNGIKNFLENILTIE 162 (419)
Q Consensus 139 ~~~~vSa~-~~~~v~~l~~~i~~~~ 162 (419)
+++++||+ ++.|++++|+.+.+.+
T Consensus 157 ~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 157 TYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred EEEEeeecCCCcCHHHHHHHHHHHH
Confidence 78999999 6899999999998754
No 294
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.79 E-value=3.5e-19 Score=186.80 Aligned_cols=163 Identities=16% Similarity=0.191 Sum_probs=115.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCc------e---e------eecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGEN------R---V------ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~------~---~------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 244 (419)
...++|+++|++|+|||||+++|++.. . . ......|+|.+.....+...+..+.+|||||+
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH---- 369 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH---- 369 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH----
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh----
Confidence 356899999999999999999998631 0 0 11234577777655555666789999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccCCChhh-HHHHHHHHHHHc
Q psy17089 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQ-RKIIKNNIKKKL 322 (419)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~-~~~~~~~~~~~~ 322 (419)
++|. ..+..++..+|++|+|+|++++...+..+++..+...++| +|+|+||+|+.+... .+...+++.+.+
T Consensus 370 ------edF~-~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 370 ------ADYV-KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp ------HHHH-HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred ------HHHH-HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 5554 4455788899999999999999888888888888888999 799999999985322 233334444433
Q ss_pred CCC----CCCcEEEEeccCC--------CCHHHHHHHHHHHHh
Q psy17089 323 NFL----SFAMFNFISAIKL--------NNINSFMESINHVYD 353 (419)
Q Consensus 323 ~~~----~~~~~~~~SA~~g--------~gv~~l~~~i~~~~~ 353 (419)
... ...+++++||++| .|+++|++.+.+.++
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 322 2478999999999 357777777766543
No 295
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=157.11 Aligned_cols=159 Identities=13% Similarity=0.164 Sum_probs=108.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCC--CCCccceEEEEEECCeEEEEEEcCCCCCcc--hhhHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYP--GLTRDRHYGEGYIGKKSFIIIDTGGFEPEV--KKGIMHEMTKQTKQ 78 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~~ 78 (419)
++|+|+|++|||||||+|+|++.... ....+ ++|.++....+.+++..+.+|||||+.+.. .++..+++...+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 44444 789999999999999999999999987542 22334456666666
Q ss_pred HHHhCCEEEEEEeCCCCCCHhHHHHHHHHH-----hcCCCEEEEEeccCCCCCCcch-----------hHH-hcCCCCeE
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLR-----KSGQPIVLVINKSENINSSISL-----------DFY-ELGIGNPH 141 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~~~~~~~l~-----~~~~p~ilv~NK~Dl~~~~~~~-----------~~~-~~~~~~~~ 141 (419)
+.+++|++++|+|+.+ +...+..++.++. ....|+++|+||+|+....... ++. ..+. .++
T Consensus 109 ~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-~~~ 186 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-RYC 186 (239)
T ss_dssp TTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS-SEE
T ss_pred cCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC-EEE
Confidence 6778899999999874 4444444444443 2356999999999987654331 112 2343 566
Q ss_pred EEeecc-----CCCHHHHHHHHHHhcCC
Q psy17089 142 IISALY-----GNGIKNFLENILTIELP 164 (419)
Q Consensus 142 ~vSa~~-----~~~v~~l~~~i~~~~~~ 164 (419)
.+++.. ..++.+|+..+.+.+.+
T Consensus 187 ~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 187 ALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 666553 36899999998877644
No 296
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.79 E-value=1.3e-18 Score=165.74 Aligned_cols=160 Identities=26% Similarity=0.291 Sum_probs=110.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
+.|+|+|++|||||||+|+|++.. ..+.+.+++|+|...+.+.++|..+.+|||||+....+....+.+. .+...+..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~-~tl~~~~~ 257 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFF-VTLSEAKY 257 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHH-HHHHGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHH-HHHHHHHh
Confidence 359999999999999999999875 4567888999999999999999999999999986543334444443 34556899
Q ss_pred CCEEEEEEeCCCCCCHhH---HHHHHHHHh---cCCCEEEEEeccCCCCCCcc---hh---H-Hhc-C-CCCeEEEeecc
Q psy17089 83 SDIIIFIVDGRQGLVEQD---KLITNFLRK---SGQPIVLVINKSENINSSIS---LD---F-YEL-G-IGNPHIISALY 147 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~---~~---~-~~~-~-~~~~~~vSa~~ 147 (419)
+|++++|+|++++..... ..+.+.++. .++|+++|+||+|+...... .. + ... . ..+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 999999999876531122 223344444 47899999999999765421 11 1 122 1 12568999999
Q ss_pred CCCHHHHHHHHHHhcCC
Q psy17089 148 GNGIKNFLENILTIELP 164 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~ 164 (419)
+.|++++++.|.+.+..
T Consensus 338 g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcc
Confidence 99999999999876654
No 297
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.66 E-value=6.9e-21 Score=167.51 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|.+|||||||+++|++.. +...+.+++.+.....+.+++. .+.+|||||+. ++......++
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 99 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE---------DYDRLRPLSY 99 (204)
Confidence 489999999999999999999653 3444445555555555555554 45599999987 4445556678
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHhc--CCCEEEEEeccCCCCCCc------------c-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~------------~-----~~~~-~~~~~ 138 (419)
.++|++++|+|+.++.+... ..+...+... +.|+++|+||+|+..... . .++. ..+..
T Consensus 100 ~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 3th5_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
Confidence 89999999999876544333 2455555543 789999999999976431 1 1111 22323
Q ss_pred CeEEEeeccCCCHHHHHHHHHHh
Q psy17089 139 NPHIISALYGNGIKNFLENILTI 161 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~ 161 (419)
+++++||++|.|++++++.|.+.
T Consensus 180 ~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 180 KYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 67999999999999999998764
No 298
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.79 E-value=1.2e-19 Score=173.04 Aligned_cols=211 Identities=12% Similarity=0.175 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCcee-----eecCCCC---------
Q psy17089 150 GIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRV-----ITYDTPG--------- 215 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~-----~~~~~~~--------- 215 (419)
.+-++++.+.+.+..... ......++|+++|.+|||||||+|+|+|.... .++..|+
T Consensus 8 ~l~~~~~~l~d~l~~~g~---------~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~ 78 (353)
T 2x2e_A 8 DLIPLVNRLQDAFSAIGQ---------NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATT 78 (353)
T ss_dssp SCHHHHHHHHHHHHTTTC---------GGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHcCC---------CCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCc
Confidence 445666666655443211 00134579999999999999999999997654 3333344
Q ss_pred -------------cccee-----------------------eeEeeEE-eCeeEEEEeCCCCCCCCc---chHHHHHHHH
Q psy17089 216 -------------TTRDS-----------------------IKSLFEY-NNKKYILIDTAGIRRRNK---TFEVIEKFSV 255 (419)
Q Consensus 216 -------------~t~~~-----------------------~~~~~~~-~~~~~~liDtpG~~~~~~---~~~~~e~~~~ 255 (419)
+|.+. ....+.. ++.++.||||||+..... ..+..+.+.
T Consensus 79 ~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~- 157 (353)
T 2x2e_A 79 EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIR- 157 (353)
T ss_dssp CEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHH-
T ss_pred cceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHH-
Confidence 22220 0000111 146899999999975321 111122333
Q ss_pred HHHHHHHhhc-CEEEEEecCCCCCCHHHH-HHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCC--CCCCcEE
Q psy17089 256 IKTLKSILEA-NVVILLLDAQQNISAQDI-NIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF--LSFAMFN 331 (419)
Q Consensus 256 ~~~~~~~~~a-d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~ 331 (419)
.....+++.+ +++++|+|++......+. .+++.+...+.|+++|+||+|+.+.... ..+.+...... .++.+++
T Consensus 158 ~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~ 235 (353)
T 2x2e_A 158 DMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVV 235 (353)
T ss_dssp HHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECC
T ss_pred HHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEE
Confidence 2334566555 466667777765555554 3666666678999999999999764321 11111111111 2235788
Q ss_pred EEeccCCCCHHHHHHHHHHHH---------hhcCCCCCHHHHHHHHHHHH
Q psy17089 332 FISAIKLNNINSFMESINHVY---------DSSIIHLSTSRITRALISAI 372 (419)
Q Consensus 332 ~~SA~~g~gv~~l~~~i~~~~---------~~~~~~~~~~~l~~~l~~~~ 372 (419)
++||++|.|++++++.+.+.. .....+..+..+.+.+++.+
T Consensus 236 ~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l 285 (353)
T 2x2e_A 236 NRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQL 285 (353)
T ss_dssp CCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHH
T ss_pred eCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHH
Confidence 999999999999999988731 12233444566666655443
No 299
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.79 E-value=9.8e-20 Score=165.83 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=102.0
Q ss_pred cceeEEEEEeCC---------CCchhHHHHHHhCC--ceeeecCCCCc-cceeeeEeeE----------------EeCee
Q psy17089 180 IEYIKVAIVGKP---------NVGKSTLINSLLGE--NRVITYDTPGT-TRDSIKSLFE----------------YNNKK 231 (419)
Q Consensus 180 ~~~~~i~l~G~~---------~~GKSslin~l~~~--~~~~~~~~~~~-t~~~~~~~~~----------------~~~~~ 231 (419)
...+||+++|.+ |||||||+|+|++. ..+.....+++ +.+.....+. .....
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 467999999999 99999999999984 22223233332 2332222211 12346
Q ss_pred EEEEe------CCCCCCCCcch--H-----HHHHHHHHHHHHHHh---------------------hcCEEEEEecCCCC
Q psy17089 232 YILID------TAGIRRRNKTF--E-----VIEKFSVIKTLKSIL---------------------EANVVILLLDAQQN 277 (419)
Q Consensus 232 ~~liD------tpG~~~~~~~~--~-----~~e~~~~~~~~~~~~---------------------~ad~~i~v~d~~~~ 277 (419)
+.+|| |||........ . ..++|.... ..+++ .||++|+|+|++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAE-KLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTT-CBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhh-hhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 77888 66654333210 0 000000000 01122 69999999999987
Q ss_pred --CCHHHH-HHHHHHH----HcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHH
Q psy17089 278 --ISAQDI-NIANFIY----ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINH 350 (419)
Q Consensus 278 --~~~~~~-~~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~ 350 (419)
.+.... .++..+. ..+.|+++|+||+|+......+ ..........+++++++||++|.|++++|+.|.+
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~----~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR----DAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHH----HHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHH----HHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 777764 3444443 3579999999999996544332 2222222223578999999999999999999987
Q ss_pred HHh
Q psy17089 351 VYD 353 (419)
Q Consensus 351 ~~~ 353 (419)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
No 300
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.79 E-value=2.2e-19 Score=155.21 Aligned_cols=155 Identities=17% Similarity=0.244 Sum_probs=100.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecC-CCCCCccceEEEEEE-----CCeEEEEEEcCCCCCcchhhHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVAN-YPGLTRDRHYGEGYI-----GKKSFIIIDTGGFEPEVKKGIMHEMTKQ 75 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~-~~~~t~~~~~~~~~~-----~~~~~~liDtpG~~~~~~~~~~~~~~~~ 75 (419)
..||+|+|++|||||||+|+|++....+... .++++.+.....+.+ ....+.+|||||++ ++...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~ 72 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE---------EFYST 72 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH---------HHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH---------HHHHh
Confidence 3689999999999999999999863333333 334445544433332 34578899999986 44444
Q ss_pred HHHHHHhCCEEEEEEeCCCCCC---HhHHHHHHHHHh-cCCCEEEEEeccCCCCCCcc--------hhHH-hcCCC---C
Q psy17089 76 TKQAIIESDIIIFIVDGRQGLV---EQDKLITNFLRK-SGQPIVLVINKSENINSSIS--------LDFY-ELGIG---N 139 (419)
Q Consensus 76 ~~~~~~~~d~il~v~d~~~~~~---~~~~~~~~~l~~-~~~p~ilv~NK~Dl~~~~~~--------~~~~-~~~~~---~ 139 (419)
...++.+++++++|+|.+++.. ....|+...... .+.|+++|+||+|+...... .++. ..++. .
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
T 2zej_A 73 HPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD 152 (184)
T ss_dssp SHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEE
T ss_pred hHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhh
Confidence 5567889999999999876422 112333332222 37899999999999765432 1111 23442 2
Q ss_pred eEEEeeccCC-CHHHHHHHHHHhcCCc
Q psy17089 140 PHIISALYGN-GIKNFLENILTIELPY 165 (419)
Q Consensus 140 ~~~vSa~~~~-~v~~l~~~i~~~~~~~ 165 (419)
++++||+++. ++++|++.|.+.++..
T Consensus 153 ~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 153 YHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred eEEEecccCchhHHHHHHHHHHHHhcc
Confidence 7999999997 9999999998877654
No 301
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.78 E-value=1.1e-20 Score=185.75 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=118.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
++++|+++|++|+|||||+++|.+.. ......+|+|.+.....+.+++..+.+|||||+.++.... ..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~-----------~~ 70 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR-----------AR 70 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB-----------CS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH-----------HH
Confidence 56799999999999999999998753 2344557788877766777778899999999997765321 24
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHH--Hc-CCC-CCCcEEEEecc
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK--KL-NFL-SFAMFNFISAI 336 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~SA~ 336 (419)
++..+|++++|+|++++...+..+.+..+...+.|+++|+||+|+..... ......+.. .+ ..+ ...+++++||+
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 56789999999999998888888888888889999999999999964321 001011000 00 011 13689999999
Q ss_pred CCCCHHHHHHHHHH
Q psy17089 337 KLNNINSFMESINH 350 (419)
Q Consensus 337 ~g~gv~~l~~~i~~ 350 (419)
+|.|+++|++.+..
T Consensus 150 tG~gI~eLle~I~~ 163 (501)
T 1zo1_I 150 AGTGIDELLDAILL 163 (501)
T ss_dssp TCTTCTTHHHHTTT
T ss_pred eccCcchhhhhhhh
Confidence 99999999998864
No 302
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.78 E-value=3.9e-19 Score=179.11 Aligned_cols=162 Identities=21% Similarity=0.221 Sum_probs=112.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCC-CccceeeeEeeEE------------------eCeeEEEEeCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-GTTRDSIKSLFEY------------------NNKKYILIDTAGIR 241 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~-~~t~~~~~~~~~~------------------~~~~~~liDtpG~~ 241 (419)
++++|+++|++|+|||||+++|++... ....+ ++|.+.....+.. ....+.||||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 567999999999999999999987532 11222 3443322222211 11258999999997
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChh------------
Q psy17089 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHN------------ 309 (419)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~------------ 309 (419)
++.... ..+++.+|++|+|+|++++...+....+..+...++|+++|+||+|+....
T Consensus 82 ~F~~~~-----------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~s 150 (594)
T 1g7s_A 82 AFTTLR-----------KRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETF 150 (594)
T ss_dssp CCTTSB-----------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHH
T ss_pred HHHHHH-----------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHH
Confidence 765321 135678999999999999998898888888888999999999999996421
Q ss_pred -----h-HHHH---HHHHHHHcC--------------CCCCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 310 -----Q-RKII---KNNIKKKLN--------------FLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 310 -----~-~~~~---~~~~~~~~~--------------~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
. ...+ ..++...+. .....+++++||++|.|+++|++.+...++..
T Consensus 151 a~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 151 SKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 0 0111 111111111 12335899999999999999999999877643
No 303
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.78 E-value=1.9e-19 Score=158.46 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=102.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.||+|+|++|||||||+|+|++.. +...+..++.......+.+++ ..+.+|||||++.. ......++
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~~~~ 97 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC--FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY---------DNVRPLSY 97 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG---------TTTGGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh---------hHHHHhhc
Confidence 589999999999999999999864 223333333333333445454 57889999998632 22334467
Q ss_pred HhCCEEEEEEeCCCCCCHhH--HHHHHHHHh--cCCCEEEEEeccCCCCC------------Ccc-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINS------------SIS-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~Dl~~~------------~~~-----~~~~-~~~~~ 138 (419)
.++|++++|+|..+..+... ..+...++. .+.|+++|+||+|+... +.+ .++. ..+..
T Consensus 98 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 177 (205)
T 1gwn_A 98 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA 177 (205)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCC
Confidence 89999999999986433332 234444444 37899999999999742 112 2222 34534
Q ss_pred CeEEEeec-cCCCHHHHHHHHHHhc
Q psy17089 139 NPHIISAL-YGNGIKNFLENILTIE 162 (419)
Q Consensus 139 ~~~~vSa~-~~~~v~~l~~~i~~~~ 162 (419)
.++++||+ ++.|++++|+.+.+.+
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHH
Confidence 78999999 6899999999988754
No 304
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.78 E-value=5.1e-20 Score=167.61 Aligned_cols=142 Identities=23% Similarity=0.290 Sum_probs=102.2
Q ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH-hcCCCCeEEEeeccCC
Q psy17089 74 KQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALYGN 149 (419)
Q Consensus 74 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~~~~~~vSa~~~~ 149 (419)
+++...+.++|++++|+|++.+.......+. ++ ++|.++|+||+|+...... .+++ ..+. ++ .+||+++.
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~-~v-~iSa~~~~ 86 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFFKKQGK-RV-ITTHKGEP 86 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC-CE-EECCTTSC
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHHHHcCC-eE-EEECCCCc
Confidence 5677789999999999999987666544333 33 8999999999999875433 3334 3455 56 99999999
Q ss_pred CHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC
Q psy17089 150 GIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN 229 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~ 229 (419)
|+++|++.+...+ ++++++|.||||||||+|+|.+.....+++.+|+|....... .+
T Consensus 87 gi~~L~~~l~~~~--------------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~ 143 (262)
T 3cnl_A 87 RKVLLKKLSFDRL--------------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS---LE 143 (262)
T ss_dssp HHHHHHHHCCCTT--------------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE---CT
T ss_pred CHHHHHHHHHHhh--------------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE---eC
Confidence 9998887754211 689999999999999999999987777888899988653222 24
Q ss_pred eeEEEEeCCCCCCCC
Q psy17089 230 KKYILIDTAGIRRRN 244 (419)
Q Consensus 230 ~~~~liDtpG~~~~~ 244 (419)
..+.+|||||+....
T Consensus 144 ~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 144 NGVKILDTPGILYKN 158 (262)
T ss_dssp TSCEEESSCEECCCC
T ss_pred CCEEEEECCCcccCc
Confidence 688999999998765
No 305
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.78 E-value=1.1e-19 Score=179.39 Aligned_cols=156 Identities=20% Similarity=0.267 Sum_probs=99.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCcee------------------------ee------cCCCCccceeeeEeeEEeC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV------------------------IT------YDTPGTTRDSIKSLFEYNN 229 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~------------------------~~------~~~~~~t~~~~~~~~~~~~ 229 (419)
...++|+++|++|+|||||+++|+..... .+ ....|+|++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 35689999999999999999999742100 00 1134777777666777788
Q ss_pred eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCC-------HHHHHHHHHHHHcCCc-EEEEEE
Q psy17089 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNIS-------AQDINIANFIYESGRS-LIVCVN 301 (419)
Q Consensus 230 ~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~N 301 (419)
..+.||||||+.++. .....++..+|++|+|+|++++.. .+..+.+..+...++| +++|+|
T Consensus 121 ~~~~iiDtPGh~~f~-----------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN 189 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYV-----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 189 (467)
T ss_dssp EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred eEEEEEECCCcHHHH-----------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEE
Confidence 899999999994432 334467889999999999998731 2455666667778888 999999
Q ss_pred cccCCC----hhhHHHHHHHHHHHcCCC---C---CCcEEEEeccCCCCHHHHHH
Q psy17089 302 KWDSII----HNQRKIIKNNIKKKLNFL---S---FAMFNFISAIKLNNINSFME 346 (419)
Q Consensus 302 K~Dl~~----~~~~~~~~~~~~~~~~~~---~---~~~~~~~SA~~g~gv~~l~~ 346 (419)
|+|+.. ........+++...+... . .++++++||++|.|++++++
T Consensus 190 K~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 190 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 999954 222333334444433221 1 46799999999999988763
No 306
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.78 E-value=4.9e-19 Score=182.40 Aligned_cols=168 Identities=20% Similarity=0.314 Sum_probs=117.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCcc--------------ceeee-----------------------
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTT--------------RDSIK----------------------- 222 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t--------------~~~~~----------------------- 222 (419)
...++|+++|.+|+|||||+|+|+|....+++..|+|. .+...
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 36689999999999999999999999877777777762 21100
Q ss_pred ----------------EeeEEeC----eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHH
Q psy17089 223 ----------------SLFEYNN----KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQD 282 (419)
Q Consensus 223 ----------------~~~~~~~----~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~ 282 (419)
..+.+.. ..+.||||||+.+.. . ....+..+++.||++|+|+|++++.+..+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-------~-~~~~~~~~i~~aD~vL~Vvda~~~~s~~e 218 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-------A-RNELSLGYVNNCHAILFVMRASQPCTLGE 218 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-------T-CHHHHTHHHHSSSEEEEEEETTSTTCHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh-------h-HHHHHHHHHHhCCEEEEEEeCCCccchhH
Confidence 0000100 468999999984321 1 12445578899999999999999988888
Q ss_pred HHHHH-HHHHcCCcEEEEEEcccCCChh--------hHHH----HHHHHHHHcCC--------CCCCcEEEEecc-----
Q psy17089 283 INIAN-FIYESGRSLIVCVNKWDSIIHN--------QRKI----IKNNIKKKLNF--------LSFAMFNFISAI----- 336 (419)
Q Consensus 283 ~~~~~-~~~~~~~~~iiv~NK~Dl~~~~--------~~~~----~~~~~~~~~~~--------~~~~~~~~~SA~----- 336 (419)
...+. .+...+.|+++|+||+|+.... .... +...+...+.. ....+++++||+
T Consensus 219 ~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~ 298 (695)
T 2j69_A 219 RRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRR 298 (695)
T ss_dssp HHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHh
Confidence 87664 4555688999999999996442 1111 21222222211 123579999999
Q ss_pred ---------CCCCHHHHHHHHHHHHhhc
Q psy17089 337 ---------KLNNINSFMESINHVYDSS 355 (419)
Q Consensus 337 ---------~g~gv~~l~~~i~~~~~~~ 355 (419)
+|.|++++++.+.+.+...
T Consensus 299 ~~~~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 299 RLKNPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp HHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred hccCchhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999999877653
No 307
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.78 E-value=9.9e-19 Score=175.60 Aligned_cols=154 Identities=23% Similarity=0.266 Sum_probs=112.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcee--------c------CCCCCCccceEEEEEEC---C--eEEEEEEcCCCCCc
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV--------A------NYPGLTRDRHYGEGYIG---K--KSFIIIDTGGFEPE 63 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~--------~------~~~~~t~~~~~~~~~~~---~--~~~~liDtpG~~~~ 63 (419)
++|+|+|++|+|||||+++|+...+.+. . ...++|.......+.+. + ..+.+|||||+.
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~-- 84 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV-- 84 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG--
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH--
Confidence 6899999999999999999975322111 1 12356666555556553 2 678899999998
Q ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH-hcCC--
Q psy17089 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGI-- 137 (419)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~-- 137 (419)
.+......++..+|++++|+|+.++...+....+..+...+.|+++|+||+|+...... .++. .++.
T Consensus 85 -------dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 85 -------DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDP 157 (600)
T ss_dssp -------GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCG
T ss_pred -------hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCc
Confidence 34455667789999999999999998888877777777789999999999999875432 2222 2343
Q ss_pred CCeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 138 GNPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 138 ~~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
.+++++||++|.|++++++.|.+.++..
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 2589999999999999999999988764
No 308
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=3.2e-18 Score=170.64 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=91.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceee---------------e------cCCCCccceeeeEeeEEeCeeEEEEeCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI---------------T------YDTPGTTRDSIKSLFEYNNKKYILIDTAG 239 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~---------------~------~~~~~~t~~~~~~~~~~~~~~~~liDtpG 239 (419)
+.++|+++|++|+|||||+++|++..... + ....|+|.......+.+++..+.||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 56899999999999999999998532111 1 12345666666667778889999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChh
Q psy17089 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHN 309 (419)
Q Consensus 240 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~ 309 (419)
+.++. .....+++.+|++|+|+|++++...+...++..+...++|+++|+||+|+....
T Consensus 92 ~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 92 HEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp STTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred ChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 97665 234467899999999999999988888888888888899999999999997543
No 309
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.77 E-value=9.9e-19 Score=153.08 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=109.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCe--eEEEEeCCCCCCCCcchHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~e~~~~~~~ 258 (419)
..++|+++|++|||||||+++|.+.... ....++.+.+.....+.+++. .+.+|||||+...... .
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~-----------~ 71 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI-----------T 71 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCC-C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC-----------C
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh-----------h
Confidence 4589999999999999999999987532 223344555666667777775 5667999998544311 1
Q ss_pred HHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEEE
Q psy17089 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (419)
Q Consensus 259 ~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (419)
..+++.++++++|+|+++..+..+. .++..+.. .+.|+++|+||+|+...... ......+... ..+.++++
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~----~~~~~~d~ 147 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK----NNLSFIET 147 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH----TTCEEEEC
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHH----cCCeEEEE
Confidence 2466789999999999987555543 34444443 46899999999999643211 1111122222 23688999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q psy17089 334 SAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (419)
||+++.|++++++.+.+.+..
T Consensus 148 Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 310
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.77 E-value=1e-18 Score=175.84 Aligned_cols=186 Identities=18% Similarity=0.212 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeE----
Q psy17089 148 GNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKS---- 223 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~---- 223 (419)
..|++.+..++.+....... .........+||+++|.+|||||||+|+|++... .....+++..+....
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~------g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~-~~~~~~t~g~~~~~~~~~~ 85 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSK------GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETF-DPKESQTHGLNVVTKQAPN 85 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHT------TCCCBCCCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGG
T ss_pred HhCHHHHHHHHHHHHHhhcc------CcccccccceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEecccc
Confidence 35677777666653221000 0010124679999999999999999999998752 221222222222211
Q ss_pred --eeEE----eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHc--CCc
Q psy17089 224 --LFEY----NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES--GRS 295 (419)
Q Consensus 224 --~~~~----~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~ 295 (419)
.+.. .+..+.+|||||+...... ...+++.+|++++|+|+++. .....++..+... +.|
T Consensus 86 ~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~-----------~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p 152 (535)
T 3dpu_A 86 IKGLENDDELKECLFHFWDFGGQEIMHAS-----------HQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP 152 (535)
T ss_dssp SGGGTTCSTTTTCEEEEECCCSCCTTTTT-----------CHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC
T ss_pred ccceeecCCCceEEEEEEECCcHHHHHHH-----------HHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC
Confidence 1111 2468999999998655422 12467789999999999875 3445677777764 499
Q ss_pred EEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 296 LIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 296 ~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+++|+||+|+.+..... .+.+.+.+... +++++++||++|.|+++|++.+.+.+....
T Consensus 153 vilV~NK~Dl~~~~~v~--~~~~~~~~~~~-~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 153 VIVVMNKIDENPSYNIE--QKKINERFPAI-ENRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp EEEEECCTTTCTTCCCC--HHHHHHHCGGG-TTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred EEEEEECCCcccccccC--HHHHHHHHHhc-CCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 99999999997543211 12233333332 368999999999999999999999887644
No 311
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.77 E-value=9.4e-20 Score=175.45 Aligned_cols=90 Identities=27% Similarity=0.257 Sum_probs=50.1
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE---------------------e---CeeEEEEeCC
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY---------------------N---NKKYILIDTA 238 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~~~liDtp 238 (419)
++|+++|.||||||||+|+|++.. +.++++|++|++...+...+ + ..++.+||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 489999999999999999999986 67889999998877664321 2 2478999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCC
Q psy17089 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN 277 (419)
Q Consensus 239 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~ 277 (419)
|+.+..... +......+.+++.+|++++|+|++++
T Consensus 80 G~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -------------------CCCSSTTCSEEEEEEETTCC
T ss_pred Ccccchhhh----hhHHHHHHHHHhcCCEEEEEEecccc
Confidence 996532110 11112223567899999999999875
No 312
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=1.9e-18 Score=167.69 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=109.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCC--------------Cccc-----eEEEEEECCeEEEEEEcCCCCCc
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGL--------------TRDR-----HYGEGYIGKKSFIIIDTGGFEPE 63 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~--------------t~~~-----~~~~~~~~~~~~~liDtpG~~~~ 63 (419)
.+|+++|++|+|||||+|+|++........+... +.+. ...........+.+|||||++
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~-- 86 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE-- 86 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG--
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH--
Confidence 5899999999999999999998432110000000 0000 000001122689999999987
Q ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-CHhHHHHHHHHHhcC-CCEEEEEeccCCCCCCcc----hh---HH-
Q psy17089 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL-VEQDKLITNFLRKSG-QPIVLVINKSENINSSIS----LD---FY- 133 (419)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~~~~l~~~~-~p~ilv~NK~Dl~~~~~~----~~---~~- 133 (419)
.+...+...+..+|++++|+|+.++. ..+..+++..++..+ +|+++|+||+|+...... .+ +.
T Consensus 87 -------~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 87 -------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp -------GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 55667778889999999999999886 666677777777655 489999999999876543 11 11
Q ss_pred hc--CCCCeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 134 EL--GIGNPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 134 ~~--~~~~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
.. ...+++++||++|.|+++|++.|.+.++..
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 11 123789999999999999999999877654
No 313
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.77 E-value=7e-19 Score=166.50 Aligned_cols=150 Identities=21% Similarity=0.205 Sum_probs=111.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEE--EEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFI--IIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|.+|||||||+++|++.. +...+.+++.+.....+..++..+. +|||||++. +......++
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 224 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED---------YDRLRPLSY 224 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG---------GTTTGGGGC
T ss_pred eEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchh---------hhHHHHHhc
Confidence 589999999999999999999753 3555667777777777778887655 999999873 223444567
Q ss_pred HhCCEEEEEEeCCCCCCHhHH--HHHHHHHhc--CCCEEEEEeccCCCCCC------------cc-----hhHH-hcCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRKS--GQPIVLVINKSENINSS------------IS-----LDFY-ELGIG 138 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~~--~~~~~l~~~--~~p~ilv~NK~Dl~~~~------------~~-----~~~~-~~~~~ 138 (419)
.++|++++|+|+.++.+.... .+...+... ++|+++|+||+|+.... .. .++. ..+..
T Consensus 225 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 304 (332)
T 2wkq_A 225 PQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 304 (332)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCc
Confidence 899999999999875443332 344555543 78999999999986542 11 1222 33444
Q ss_pred CeEEEeeccCCCHHHHHHHHHHhcC
Q psy17089 139 NPHIISALYGNGIKNFLENILTIEL 163 (419)
Q Consensus 139 ~~~~vSa~~~~~v~~l~~~i~~~~~ 163 (419)
+++++||++|.|++++++.+.+.+.
T Consensus 305 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 305 KYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHh
Confidence 7899999999999999999987654
No 314
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=1.3e-17 Score=162.19 Aligned_cols=154 Identities=19% Similarity=0.153 Sum_probs=106.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCc--eecCCCCCCccceEEEEEE---------------C--C------eEEEEEEc
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDA--LVANYPGLTRDRHYGEGYI---------------G--K------KSFIIIDT 57 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~--~~~~~~~~t~~~~~~~~~~---------------~--~------~~~~liDt 57 (419)
.+|+++|++++|||||+++|++.... .....+++|.+..+....+ . + ..+.+|||
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 88 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDS 88 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEEC
Confidence 58999999999999999999975421 1223457788766554433 1 1 67999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-CHhHHHHHHHHHhcCC-CEEEEEeccCCCCCCcc------
Q psy17089 58 GGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL-VEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS------ 129 (419)
Q Consensus 58 pG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~~~~l~~~~~-p~ilv~NK~Dl~~~~~~------ 129 (419)
||++ .+...+...+..+|++++|+|+.++. ..+..+.+..++..+. |+++|+||+|+......
T Consensus 89 PGh~---------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 89 PGHE---------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp SSHH---------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred CCHH---------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9986 55566666677889999999999876 6666666666666554 79999999999875432
Q ss_pred -hhHHhc---CCCCeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 130 -LDFYEL---GIGNPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 130 -~~~~~~---~~~~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
.++... ...+++++||++|.|+++|++.|.+.++..
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 122221 223789999999999999999999877653
No 315
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.76 E-value=5.9e-18 Score=164.72 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=116.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCc--eecCCCCCCccceEEEEEEC-----------------------CeEEEEEEc
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDA--LVANYPGLTRDRHYGEGYIG-----------------------KKSFIIIDT 57 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~--~~~~~~~~t~~~~~~~~~~~-----------------------~~~~~liDt 57 (419)
.+|+++|++|+|||||+++|+|.... .....+++|.+..+....+. ...+.+|||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 48999999999999999999975321 12234678887766555441 167999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-CHhHHHHHHHHHhcC-CCEEEEEeccCCCCCCcc------
Q psy17089 58 GGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL-VEQDKLITNFLRKSG-QPIVLVINKSENINSSIS------ 129 (419)
Q Consensus 58 pG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~~~~l~~~~-~p~ilv~NK~Dl~~~~~~------ 129 (419)
||+. .+...+...+..+|++++|+|+.++. ..+..+.+..++..+ .|+++|+||+|+......
T Consensus 91 PGh~---------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 161 (410)
T 1kk1_A 91 PGHE---------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQ 161 (410)
T ss_dssp SSHH---------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred CChH---------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHH
Confidence 9986 56666777788999999999999876 666666666666555 479999999999875431
Q ss_pred -hhHHhc---CCCCeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 130 -LDFYEL---GIGNPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 130 -~~~~~~---~~~~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
.+++.. ...+++++||++|.|+++|++.|.+.++..
T Consensus 162 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 162 IKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 222221 224789999999999999999999877753
No 316
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.76 E-value=1.4e-18 Score=168.91 Aligned_cols=154 Identities=21% Similarity=0.196 Sum_probs=119.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC---CC----ce---ec------CCCCCCccceEEEEEECCeEEEEEEcCCCCCcchh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNS---RD----AL---VA------NYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~---~~----~~---~~------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (419)
.+|+++|++|+|||||+|+|++. .+ +. .. ...++|.+.....+...+..+.+|||||++
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~----- 86 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA----- 86 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG-----
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH-----
Confidence 58999999999999999999873 11 00 00 134678887776777778999999999998
Q ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCcc--------hhHH-hcC
Q psy17089 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS--------LDFY-ELG 136 (419)
Q Consensus 67 ~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~--------~~~~-~~~ 136 (419)
++...+...+..+|++++|+|+.++...+..+++..++..+.| +++|+||+|+...... .++. ..+
T Consensus 87 ----~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 ----DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp ----GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 4456667788999999999999998888888888888888999 8899999999853221 1222 233
Q ss_pred C----CCeEEEeeccCCC------------------HHHHHHHHHHhcCCc
Q psy17089 137 I----GNPHIISALYGNG------------------IKNFLENILTIELPY 165 (419)
Q Consensus 137 ~----~~~~~vSa~~~~~------------------v~~l~~~i~~~~~~~ 165 (419)
+ .+++++||++|.| +.+|++.+.+.++..
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 2 4789999999987 889999998877743
No 317
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=4.6e-18 Score=159.80 Aligned_cols=165 Identities=17% Similarity=0.169 Sum_probs=109.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC-----ceecCCC---CCCcc----------------------------------
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRD-----ALVANYP---GLTRD---------------------------------- 39 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~-----~~~~~~~---~~t~~---------------------------------- 39 (419)
.|+|+|+|++|||||||+|+|+|... ..++..| .++++
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 47999999999999999999999764 2222222 11111
Q ss_pred ----------------ceEEEEEE-CCeEEEEEEcCCCCCcc----hhhHHHHHHHHHHHHHHhCCEEEEEEeC-CCCCC
Q psy17089 40 ----------------RHYGEGYI-GKKSFIIIDTGGFEPEV----KKGIMHEMTKQTKQAIIESDIIIFIVDG-RQGLV 97 (419)
Q Consensus 40 ----------------~~~~~~~~-~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~~d~il~v~d~-~~~~~ 97 (419)
.....+.. .+..+.+|||||+.... .+.+.+.+...+..++..+|++++|+|+ ..++.
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 00000111 34679999999997421 1234456778888899999999999996 45555
Q ss_pred HhH-HHHHHHHHhcCCCEEEEEeccCCCCCCcc-hhHHhc---CC-CCeEE---Eeecc---CCCHHHHHHHHHHhcCCc
Q psy17089 98 EQD-KLITNFLRKSGQPIVLVINKSENINSSIS-LDFYEL---GI-GNPHI---ISALY---GNGIKNFLENILTIELPY 165 (419)
Q Consensus 98 ~~~-~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~---~~-~~~~~---vSa~~---~~~v~~l~~~i~~~~~~~ 165 (419)
..+ ..+++++...+.|+++|+||+|+...... .+.... .. ..+++ +||.+ +.|+.++++.+.+.++..
T Consensus 184 ~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 184 NSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 444 47888887788999999999999876652 333321 11 24455 45555 789999999999888765
Q ss_pred c
Q psy17089 166 K 166 (419)
Q Consensus 166 ~ 166 (419)
+
T Consensus 264 ~ 264 (315)
T 1jwy_B 264 P 264 (315)
T ss_dssp T
T ss_pred C
Confidence 3
No 318
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.76 E-value=9.4e-19 Score=167.18 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=114.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
+|+++|++|+|||||+++|+ ..++|.+.....+.+.+..+.+|||||+. ++.......+..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~---------~f~~~~~~~~~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYP---------KTLKSLITALNIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTT---------TCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChH---------HHHHHHHHHHHHC
Confidence 89999999999999999998 23667777777788888899999999998 4445566778999
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHhcCCCE-EEEEe-ccCCCCCCcc-------hhHH-hcC--CCCeEE--Eeecc--
Q psy17089 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPI-VLVIN-KSENINSSIS-------LDFY-ELG--IGNPHI--ISALY-- 147 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~-ilv~N-K~Dl~~~~~~-------~~~~-~~~--~~~~~~--vSa~~-- 147 (419)
|++++|+| ..+...+..+++..++..+.|. ++++| |+|+ ..+.. .++. ..+ ..++++ +||++
T Consensus 85 D~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~ 162 (370)
T 2elf_A 85 DIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKN 162 (370)
T ss_dssp SEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred CEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence 99999999 8888888888888888889998 99999 9999 43321 1222 112 237899 99999
Q ss_pred -CCCHHHHHHHHHHhcCC
Q psy17089 148 -GNGIKNFLENILTIELP 164 (419)
Q Consensus 148 -~~~v~~l~~~i~~~~~~ 164 (419)
+.|+++|++.|.+.++.
T Consensus 163 ~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 163 PFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhccc
Confidence 99999999999887654
No 319
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.76 E-value=3.2e-18 Score=148.89 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=110.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeE--EEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
+..++|+++|++|||||||+++|.+... .....++++.+.....+.+++..+ .+|||||+.+.....
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~---------- 95 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT---------- 95 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh----------
Confidence 3568999999999999999999998753 233445566666667777777654 569999996654221
Q ss_pred HHHHHhhcCEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEEcccCCChhhH-HHHHHHHHHHcCCCCCCcEEE
Q psy17089 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (419)
Q Consensus 258 ~~~~~~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..+++.++++++|+|.++..+.++. .++..+.+ .+.|+++|+||+|+.+.... ......+... ..+.+++
T Consensus 96 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~----~~~~~ld 170 (191)
T 1oix_A 96 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK----NGLSFIE 170 (191)
T ss_dssp -HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH----TTCEEEE
T ss_pred -HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCEEEE
Confidence 2456789999999999986554443 34444443 46899999999998642211 1111222222 2368899
Q ss_pred EeccCCCCHHHHHHHHHHHH
Q psy17089 333 ISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 333 ~SA~~g~gv~~l~~~i~~~~ 352 (419)
+||+++.|++++++.+.+.+
T Consensus 171 ~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 171 TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999988754
No 320
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=1.2e-17 Score=171.98 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=90.0
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCcee-----e------ecC------CCCccceeeeEeeEEeCeeEEEEeCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV-----I------TYD------TPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~-----~------~~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~ 242 (419)
....+|+++|++|+|||||+++|+..... . +.+ ..++|.......+.+++..+.||||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 36689999999999999999999831100 0 111 346677666677778889999999999965
Q ss_pred CCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCCh
Q psy17089 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH 308 (419)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 308 (419)
+. .....+++.+|++|+|+|++++.+.+....+..+...++|+++|+||+|+...
T Consensus 90 f~-----------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FT-----------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CH-----------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred hH-----------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 53 23446788999999999999999999998888888899999999999999754
No 321
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.75 E-value=2.6e-18 Score=170.49 Aligned_cols=142 Identities=25% Similarity=0.339 Sum_probs=108.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce------------------------------ecCCCCCCccceEEEEEECCeEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL------------------------------VANYPGLTRDRHYGEGYIGKKSF 52 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 52 (419)
.+|+++|++|+|||||+|+|++....+ ....+++|.+.....+...+..+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 489999999999999999997652211 22335889999888888899999
Q ss_pred EEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCC-------CCHhHHHHHHHHHhcCC-CEEEEEeccCCC
Q psy17089 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG-------LVEQDKLITNFLRKSGQ-PIVLVINKSENI 124 (419)
Q Consensus 53 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~~~~l~~~~~-p~ilv~NK~Dl~ 124 (419)
.+|||||+. ++...+..++..+|++++|+|++++ ...+..+.+..+...+. |+++|+||+|+.
T Consensus 114 ~iiDTPG~~---------~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 114 TIVDAPGHR---------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp EEECCCCCG---------GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred EEEECCCcH---------HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 999999997 5667778889999999999999876 34566777777777664 699999999998
Q ss_pred CCCcc---------hhHH-hcCC----CCeEEEeeccCCCHHH
Q psy17089 125 NSSIS---------LDFY-ELGI----GNPHIISALYGNGIKN 153 (419)
Q Consensus 125 ~~~~~---------~~~~-~~~~----~~~~~vSa~~~~~v~~ 153 (419)
..+.. .+++ ..+. .+++++||++|.|+++
T Consensus 185 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 185 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 74322 1111 2232 2679999999999874
No 322
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.75 E-value=1.7e-17 Score=170.86 Aligned_cols=118 Identities=22% Similarity=0.225 Sum_probs=91.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCcee-----------eecC------CCCccceeeeEeeEEeCeeEEEEeCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV-----------ITYD------TPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~-----------~~~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~ 242 (419)
....+|+++|++|+|||||+|+|++.... .+.+ .+++|.......+.+++..+.||||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 35689999999999999999999842110 1111 356777776777888889999999999977
Q ss_pred CCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCCh
Q psy17089 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH 308 (419)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 308 (419)
+. .....+++.+|++|+|+|++++.+.++..++..+...++|+++|+||+|+...
T Consensus 88 f~-----------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FT-----------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CC-----------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred hH-----------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 65 22346788899999999999999999999999888899999999999999754
No 323
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=6.1e-18 Score=165.70 Aligned_cols=143 Identities=29% Similarity=0.332 Sum_probs=107.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecC--------------------------------CCCCCccceEEEEEECCe
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN--------------------------------YPGLTRDRHYGEGYIGKK 50 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~ 50 (419)
.+|+++|++|+|||||+|+|++....+..+ ..++|.+.....+...+.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 489999999999999999998654222111 135677777777777889
Q ss_pred EEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC-CEEEEEeccCCCCCCcc
Q psy17089 51 SFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS 129 (419)
Q Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~-p~ilv~NK~Dl~~~~~~ 129 (419)
.+.+|||||++ .+......++..+|++++|+|+.++...+..+++..+...+. |+++|+||+|+......
T Consensus 105 ~~~iiDtpGh~---------~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 105 KFIIADTPGHE---------QYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp EEEEEECCCSG---------GGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHH
T ss_pred eEEEEECCChH---------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHH
Confidence 99999999997 344556667899999999999999888888777777777776 48999999999864221
Q ss_pred ---------hhHH-hcC--C--CCeEEEeeccCCCHHHH
Q psy17089 130 ---------LDFY-ELG--I--GNPHIISALYGNGIKNF 154 (419)
Q Consensus 130 ---------~~~~-~~~--~--~~~~~vSa~~~~~v~~l 154 (419)
.++. ..+ . .+++++||++|.|++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1222 233 1 36799999999999873
No 324
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.75 E-value=1.4e-17 Score=152.22 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=94.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
+.++|+++|.+|+|||||+|+|++.....+++++++|.......+..++..+.+|||||+.++....+ .+. .....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~---~~~-~~i~~ 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNH---QAL-ELIKG 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECH---HHH-HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchH---HHH-HHHHH
Confidence 56999999999999999999999987767888899999888888888999999999999977654332 111 11111
Q ss_pred HH--hhcCEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCcEEEEEEcccCCC
Q psy17089 261 SI--LEANVVILLLDAQQ-NISAQDINIANFIYES-----GRSLIVCVNKWDSII 307 (419)
Q Consensus 261 ~~--~~ad~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~ 307 (419)
++ ..+|++++|+|++. ..+..+..+++.+.+. ..|+++|+||+|+.+
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 11 37899999988765 3556666777777653 249999999999963
No 325
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.75 E-value=3.7e-18 Score=165.31 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=117.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC---C--ce----------ecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSR---D--AL----------VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKG 67 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~---~--~~----------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 67 (419)
.+|+++|++|+|||||+++|++.. + .+ .....++|.+.....+...+..+.+|||||+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~------ 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA------ 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH------
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH------
Confidence 479999999999999999998631 0 00 01134667776666666677899999999997
Q ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCcc--------hhHH-hcCC
Q psy17089 68 IMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS--------LDFY-ELGI 137 (419)
Q Consensus 68 ~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~--------~~~~-~~~~ 137 (419)
++...+...+..+|++++|+|+.++...+..+.+..++..++| +++|+||+|+...... .++. ..++
T Consensus 78 ---~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 154 (397)
T 1d2e_A 78 ---DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY 154 (397)
T ss_dssp ---HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 5666777788999999999999998888888888888888999 6899999999853221 1222 3343
Q ss_pred ----CCeEEEeeccCCC----------HHHHHHHHHHhcCC
Q psy17089 138 ----GNPHIISALYGNG----------IKNFLENILTIELP 164 (419)
Q Consensus 138 ----~~~~~vSa~~~~~----------v~~l~~~i~~~~~~ 164 (419)
.+++++||++|.| +.+|++.|.+.++.
T Consensus 155 ~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 155 KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 3789999999765 88999999988775
No 326
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.74 E-value=2e-17 Score=165.70 Aligned_cols=118 Identities=21% Similarity=0.291 Sum_probs=95.3
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCc---------------------eeeecCCCCccceeeeEeeEEeCeeEEEEeCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGEN---------------------RVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~---------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtp 238 (419)
.+..+|+|+|+.++|||||..+|+... ........|+|+......+.+++..+.|+|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 367899999999999999999996110 01112344788888888899999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCCh
Q psy17089 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH 308 (419)
Q Consensus 239 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 308 (419)
|+.++. ....+.++-+|++|+|+|+..+...+...+|+.+.+.++|.++++||+|....
T Consensus 109 GHvDF~-----------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFS-----------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCS-----------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred CcHHHH-----------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence 998887 34457788899999999999999999999999999999999999999998653
No 327
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.74 E-value=3.2e-17 Score=150.55 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=95.9
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
..++|+++|.+|+|||||+|+|++.....+++.+++|.......+..++..+.+|||||+.+.........+. .....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~--i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNI--IKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHH--HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHH--HHHHh
Confidence 5689999999999999999999998766778888998888777778888899999999997765433211110 00001
Q ss_pred HHhhcCEEEEEecCCC-CCCHHHHHHHHHHHHc-C----CcEEEEEEcccCCChh
Q psy17089 261 SILEANVVILLLDAQQ-NISAQDINIANFIYES-G----RSLIVCVNKWDSIIHN 309 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~-~~~~~~~~~~~~~~~~-~----~~~iiv~NK~Dl~~~~ 309 (419)
..+.+|++++|+|++. ..+..+..+++.+.+. + .|+++|+||+|+.+..
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2347999999988865 4566667777777653 3 6999999999997643
No 328
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.74 E-value=5.2e-18 Score=173.38 Aligned_cols=218 Identities=13% Similarity=0.154 Sum_probs=129.6
Q ss_pred EEeeccCCCHHHHHHHHHH---hcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccc
Q psy17089 142 IISALYGNGIKNFLENILT---IELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTR 218 (419)
Q Consensus 142 ~vSa~~~~~v~~l~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~ 218 (419)
..++-.+.|+++++..+-+ .+..... ......++|+++|.+|+|||||+|+|+|....+.+..+ +|+
T Consensus 17 ~~~~~~~~~~~~li~~inkl~d~l~~lg~---------~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr 86 (772)
T 3zvr_A 17 RGSHMGNRGMEDLIPLVNRLQDAFSAIGQ---------NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTR 86 (772)
T ss_dssp --------CGGGHHHHHHHHHHHHHTTTC---------CGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCS
T ss_pred cccccccccHHHHHHHHHHHHHHHHhcCc---------cccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccc
Confidence 3556667777766655443 2222110 01135579999999999999999999997643333221 221
Q ss_pred ---------------------------------------------------eeeeEeeEE-eCeeEEEEeCCCCCCCCc-
Q psy17089 219 ---------------------------------------------------DSIKSLFEY-NNKKYILIDTAGIRRRNK- 245 (419)
Q Consensus 219 ---------------------------------------------------~~~~~~~~~-~~~~~~liDtpG~~~~~~- 245 (419)
+.....+.. +..++.|+||||+.....
T Consensus 87 ~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~ 166 (772)
T 3zvr_A 87 RPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVG 166 (772)
T ss_dssp SCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSS
T ss_pred cceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCC
Confidence 111111111 234689999999976321
Q ss_pred --chHHHHHHHHHHHHHHH-hhcCEEEEEecCCCCCCHHHH-HHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHH-
Q psy17089 246 --TFEVIEKFSVIKTLKSI-LEANVVILLLDAQQNISAQDI-NIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK- 320 (419)
Q Consensus 246 --~~~~~e~~~~~~~~~~~-~~ad~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~- 320 (419)
..+..+.+. .....++ ..+|++++|+|++.+...++. .+++.+...+.|+++|+||+|+.+...... .....
T Consensus 167 ~qp~di~~~i~-~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~--~il~~~ 243 (772)
T 3zvr_A 167 DQPPDIEFQIR-DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDAR--DVLENK 243 (772)
T ss_dssp CCCCHHHHHHH-HHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSH--HHHTTC
T ss_pred CCcHHHHHHHH-HHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhH--HHHHHH
Confidence 111112222 2222344 578999999999988777776 788888888999999999999986543211 11111
Q ss_pred HcC-CCCCCcEEEEeccCCCCHHHHHHHHHHH---Hhh------cCCCCCHHHHHHHHHHHH
Q psy17089 321 KLN-FLSFAMFNFISAIKLNNINSFMESINHV---YDS------SIIHLSTSRITRALISAI 372 (419)
Q Consensus 321 ~~~-~~~~~~~~~~SA~~g~gv~~l~~~i~~~---~~~------~~~~~~~~~l~~~l~~~~ 372 (419)
.+. ..++.+++++||++|.|+++|++.+.+. +++ ...+..+..+.++|++.+
T Consensus 244 ~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL 305 (772)
T 3zvr_A 244 LLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQL 305 (772)
T ss_dssp SSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHH
T ss_pred hhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHH
Confidence 111 1244678999999999999999999873 332 223445566666665543
No 329
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=4.2e-17 Score=168.12 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=91.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCcee-----------eecC------CCCccceeeeEeeEEeC-------eeEEEEe
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRV-----------ITYD------TPGTTRDSIKSLFEYNN-------KKYILID 236 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~-----------~~~~------~~~~t~~~~~~~~~~~~-------~~~~liD 236 (419)
...+|+++|++|+|||||+++|+..... ...+ ..|+|.......+.+++ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 5689999999999999999999743110 0111 34566666556666666 7899999
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCCh
Q psy17089 237 TAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH 308 (419)
Q Consensus 237 tpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 308 (419)
|||+.++. .....+++.+|++|+|+|++++...+...+++.+...++|+++|+||+|+...
T Consensus 89 TPG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVDFT-----------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccchH-----------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 99995543 23446788999999999999998888888888888889999999999998653
No 330
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.74 E-value=2.9e-17 Score=168.62 Aligned_cols=116 Identities=21% Similarity=0.201 Sum_probs=91.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCcee-----e------ecC------CCCccceeeeEeeEEeCeeEEEEeCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV-----I------TYD------TPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~-----~------~~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~ 242 (419)
.+..+|+++|++|+|||||+++|++.... . ..+ ..+++.......+.+.+..+.+|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 35679999999999999999999843211 0 001 125566666666777788999999999944
Q ss_pred CCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCC
Q psy17089 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSI 306 (419)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 306 (419)
+ . .....+++.+|++++|+|++++...+...+++.+...++|+++|+||+|+.
T Consensus 87 f----------~-~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 F----------V-GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp G----------H-HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred h----------H-HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 3 2 334578889999999999999999999999999998999999999999997
No 331
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.74 E-value=1.4e-19 Score=178.10 Aligned_cols=150 Identities=19% Similarity=0.309 Sum_probs=116.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
.|+|+++|++|+|||||+++|++.. ......+++|.+.....+.+++..+.+|||||+.+.. ......+.
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~---------~~~~~~~~ 73 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFT---------SMRARGAQ 73 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCT---------TSBCSSSB
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHH---------HHHHHHHh
Confidence 3789999999999999999998743 2234456788887776777788899999999997443 22334578
Q ss_pred hCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCc--c-hhH-----Hh--cC-CCCeEEEeeccCCC
Q psy17089 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI--S-LDF-----YE--LG-IGNPHIISALYGNG 150 (419)
Q Consensus 82 ~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~--~-~~~-----~~--~~-~~~~~~vSa~~~~~ 150 (419)
.+|++++|+|+.++..++..+.+..++..+.|+++++||+|+..... . .++ +. .+ ..+++++||++|.|
T Consensus 74 ~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 74 ATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp SCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred hCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 89999999999988888888888888888999999999999975422 1 111 11 11 13689999999999
Q ss_pred HHHHHHHHHHh
Q psy17089 151 IKNFLENILTI 161 (419)
Q Consensus 151 v~~l~~~i~~~ 161 (419)
+++|++.|...
T Consensus 154 I~eLle~I~~~ 164 (501)
T 1zo1_I 154 IDELLDAILLQ 164 (501)
T ss_dssp CTTHHHHTTTT
T ss_pred cchhhhhhhhh
Confidence 99999998753
No 332
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.4e-18 Score=174.49 Aligned_cols=143 Identities=24% Similarity=0.339 Sum_probs=111.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecC------------------------------CCCCCccceEEEEEECCeEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN------------------------------YPGLTRDRHYGEGYIGKKSF 52 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~ 52 (419)
.+|+++|++|+|||||+|+|++....+..+ .+|+|++.....+...+..+
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~ 247 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 247 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceE
Confidence 589999999999999999999765433221 25889999888899999999
Q ss_pred EEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCC-------CCHhHHHHHHHHHhcCCC-EEEEEeccCCC
Q psy17089 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG-------LVEQDKLITNFLRKSGQP-IVLVINKSENI 124 (419)
Q Consensus 53 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 124 (419)
.+|||||+. .+...+..++..+|++++|+|++.+ ...+..+.+..+...+.| +++|+||+|+.
T Consensus 248 ~iiDTPG~e---------~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 248 TIVDAPGHR---------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp EEEECCSSS---------CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred EEEECCCCc---------ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 999999997 5667777888999999999999864 345566667777766765 99999999998
Q ss_pred CCCcc---------hhHH-hcCC----CCeEEEeeccCCCHHHH
Q psy17089 125 NSSIS---------LDFY-ELGI----GNPHIISALYGNGIKNF 154 (419)
Q Consensus 125 ~~~~~---------~~~~-~~~~----~~~~~vSa~~~~~v~~l 154 (419)
..... ..++ ..+. .+++++||++|.|++++
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 73321 1122 2332 36899999999999865
No 333
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.73 E-value=3.7e-18 Score=157.99 Aligned_cols=153 Identities=12% Similarity=0.206 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
||+++|++|||||||++++.+..........+.|.......+. ....+.+|||||+++..... + ....+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~----l--~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS----Y--DSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS----H--HHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh----h--hhhhhccCC
Confidence 6999999999999999998865321111122333333333321 23679999999998442000 0 345678999
Q ss_pred CEEEEEEeCCCCCCHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCc-------c-----hhHHhc-----CCCCeE
Q psy17089 84 DIIIFIVDGRQGLVEQDKLITNFLRK-----SGQPIVLVINKSENINSSI-------S-----LDFYEL-----GIGNPH 141 (419)
Q Consensus 84 d~il~v~d~~~~~~~~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~-------~-----~~~~~~-----~~~~~~ 141 (419)
+++++|+|.++.+.....++.+++.. .+.|+++|+||+|+..... + .++... ++ .++
T Consensus 74 ~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i-~f~ 152 (331)
T 3r7w_B 74 GALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV-SFY 152 (331)
T ss_dssp SEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE-EEE
T ss_pred CEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc-eEE
Confidence 99999999987644444555555432 4789999999999987532 2 122232 22 578
Q ss_pred EEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 142 IISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 142 ~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
++||++ .++.+.|..+.+.+.+.
T Consensus 153 eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 153 LTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred EeccCC-CcHHHHHHHHHHHHHhh
Confidence 999997 58999999999877654
No 334
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.73 E-value=2.1e-19 Score=181.75 Aligned_cols=153 Identities=25% Similarity=0.276 Sum_probs=91.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcee------------------------------cCCCCCCccceEEEEEECCeEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV------------------------------ANYPGLTRDRHYGEGYIGKKSF 52 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~~ 52 (419)
.+|+++|++|+|||||+|+|++....+. ...+++|++.....+.+++..+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i 257 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEE
Confidence 4799999999999999999974321111 1245789998888888889999
Q ss_pred EEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-------CHhHHHHHHHHHhcCCC-EEEEEeccCCC
Q psy17089 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL-------VEQDKLITNFLRKSGQP-IVLVINKSENI 124 (419)
Q Consensus 53 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-------~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 124 (419)
.||||||+.+.. ..+...+..+|++++|+|+..+. ..+..+.+..+...++| +++|+||+|+.
T Consensus 258 ~iiDTPGh~~f~---------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 258 EIGDAPGHRDFI---------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp -CCEEESSSEEE---------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred EEEECCChHHHH---------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 999999998432 23344578899999999998743 66777888888888887 99999999997
Q ss_pred CCCcc---------hhHH--hcCCC----CeEEEeeccCCCHH--------------HHHHHHHHhcCC
Q psy17089 125 NSSIS---------LDFY--ELGIG----NPHIISALYGNGIK--------------NFLENILTIELP 164 (419)
Q Consensus 125 ~~~~~---------~~~~--~~~~~----~~~~vSa~~~~~v~--------------~l~~~i~~~~~~ 164 (419)
..... .+++ ..++. +++++||++|.|+. .|++.|...++.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp 397 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPP 397 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhccc
Confidence 63221 1222 23432 57999999999998 789998877664
No 335
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.73 E-value=2.2e-17 Score=144.41 Aligned_cols=151 Identities=24% Similarity=0.175 Sum_probs=107.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe--EEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+++|++.... ....++++.+...+.+.++|. .+.+|||||+... ......++
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~---------~~~~~~~~ 75 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY---------RRITSAYY 75 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCC-C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT---------TCCCHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCchhh---------hhhhHHHH
Confidence 58999999999999999999986422 233355566777778888886 4568999998632 22334456
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
.+++++++|+|.....+... ..+...+.. .+.|+++|+||+|+...+.. ..+. ..++ .++.+||+++.|
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~~d~Sal~~~~ 154 (199)
T 2f9l_A 76 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIETSALDSTN 154 (199)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 78999999999876433322 223333332 36799999999999765443 2222 3444 678899999999
Q ss_pred HHHHHHHHHHhcCC
Q psy17089 151 IKNFLENILTIELP 164 (419)
Q Consensus 151 v~~l~~~i~~~~~~ 164 (419)
++++++.+.+.+.+
T Consensus 155 i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 155 VEEAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877653
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=3.8e-18 Score=151.49 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=83.9
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeee--cCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHH
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVIT--YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~ 257 (419)
...++|+++|.+|+|||||+++|.+...... +..++++.+ +.+..+.+|||||+.... ..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~-----------~~ 71 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLR-----------YK 71 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-------GGGSSCEEEECCCCGGGT-----------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-------eeCceEEEEECCCcHHHH-----------HH
Confidence 3568999999999999999999997653211 122222222 155689999999995443 11
Q ss_pred HHHHHhh----cCEEEEEecCC-CCCCHHHH-HHHHHHHH-------cCCcEEEEEEcccCCChhhHHHHHHHHHH---H
Q psy17089 258 TLKSILE----ANVVILLLDAQ-QNISAQDI-NIANFIYE-------SGRSLIVCVNKWDSIIHNQRKIIKNNIKK---K 321 (419)
Q Consensus 258 ~~~~~~~----ad~~i~v~d~~-~~~~~~~~-~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~---~ 321 (419)
...+++. +|++++|+|++ +..+..+. .++..+.. .+.|+++|+||+|+..........+.+.+ .
T Consensus 72 ~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~ 151 (218)
T 1nrj_B 72 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQK 151 (218)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHH
Confidence 1234444 89999999999 54444332 33333322 48999999999999865443322222211 1
Q ss_pred cCCCCCCcEEEEeccCCCC
Q psy17089 322 LNFLSFAMFNFISAIKLNN 340 (419)
Q Consensus 322 ~~~~~~~~~~~~SA~~g~g 340 (419)
+......+++++||++|.+
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 152 VIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHC--------
T ss_pred HHHHHhccccccccccccc
Confidence 1111235789999998765
No 337
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=5.2e-17 Score=154.91 Aligned_cols=166 Identities=14% Similarity=0.197 Sum_probs=90.9
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCC--------CCccceeeeEeeEEeCe--eEEEEeCCCCCCC-------
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDT--------PGTTRDSIKSLFEYNNK--KYILIDTAGIRRR------- 243 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~--------~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~------- 243 (419)
..++|+++|++|+|||||+|+|++...+..... ++++.......+...+. .+.+|||||+.+.
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 568999999999999999999987654332221 22233333333344444 6888999999443
Q ss_pred CcchHHHHHHHHHHHHHHHhhc-------------CEEEEEecC-CCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChh
Q psy17089 244 NKTFEVIEKFSVIKTLKSILEA-------------NVVILLLDA-QQNISAQDINIANFIYESGRSLIVCVNKWDSIIHN 309 (419)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~a-------------d~~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~ 309 (419)
....+.++ .....+++.+ |+++++++. ..+....+..+++.+. .++|+|+|+||+|+....
T Consensus 116 ~~i~~~i~----~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 116 KTIISYID----EQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CCTHHHHH----HHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHH----HHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHH
Confidence 22221111 1112344433 467777775 5566777766666653 679999999999998776
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 310 QRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
......+.+.+.+... +++++++||++|.| ++.|..+.+.+.
T Consensus 191 ev~~~k~~i~~~~~~~-~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 191 ERERLKKRILDEIEEH-NIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 6555545666655544 47899999999998 777666665543
No 338
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.72 E-value=9.4e-19 Score=168.49 Aligned_cols=160 Identities=21% Similarity=0.251 Sum_probs=90.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE---------------------CC---eEEEEEEcCC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI---------------------GK---KSFIIIDTGG 59 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~---~~~~liDtpG 59 (419)
+|+|+|.+|||||||+|+|++.. +.++++|++|++...+...+ ++ .++.+|||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 79999999999999999999886 66788999999888775432 33 5788999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC----------H-------------------------------
Q psy17089 60 FEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLV----------E------------------------------- 98 (419)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~----------~------------------------------- 98 (419)
+.... +..+.+...+..+++++|++++|+|+.+... +
T Consensus 81 ~~~~a--~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~ 158 (397)
T 1wxq_A 81 LVPGA--HEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIK 158 (397)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTT
T ss_pred cccch--hhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 97432 0111233334456789999999999876410 0
Q ss_pred ------------------------------------------hH-HHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhH
Q psy17089 99 ------------------------------------------QD-KLITNFLRKSGQPIVLVINKSENINSSIS---LDF 132 (419)
Q Consensus 99 ------------------------------------------~~-~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~ 132 (419)
.+ ..+..++....+|+++|+||+|+...... .+.
T Consensus 159 ~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~~~~l~~l~~~ 238 (397)
T 1wxq_A 159 LQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVRE 238 (397)
T ss_dssp SSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSCHHHHHHHHHH
T ss_pred hcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCccccchHHHHHHHHH
Confidence 00 11222222346999999999998732212 122
Q ss_pred Hh-cCCCCeEEEeeccCCCHHHHHH-HHHHhcCCcch
Q psy17089 133 YE-LGIGNPHIISALYGNGIKNFLE-NILTIELPYKK 167 (419)
Q Consensus 133 ~~-~~~~~~~~vSa~~~~~v~~l~~-~i~~~~~~~~~ 167 (419)
+. .+ .+++++||+.+.++.++++ .+.+.+|..+.
T Consensus 239 ~~~~~-~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~ 274 (397)
T 1wxq_A 239 EEKRG-YIVIPTSAAAELTLRKAAKAGFIEYIPGASE 274 (397)
T ss_dssp HHHTT-CEEEEECHHHHHHHHSCSSSCCCCSCC----
T ss_pred HhhcC-CcEEEEeccchhhHHHHHhhhhhhhcCCCcc
Confidence 22 23 3789999999999988777 67777776554
No 339
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.72 E-value=8.2e-18 Score=165.55 Aligned_cols=142 Identities=22% Similarity=0.250 Sum_probs=106.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcee------------------------c------CCCCCCccceEEEEEECCeEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV------------------------A------NYPGLTRDRHYGEGYIGKKSF 52 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~------------------------~------~~~~~t~~~~~~~~~~~~~~~ 52 (419)
.+|+++|++|+|||||+|+|++....+. . ...++|.+.....+...+..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 4899999999999999999986411110 0 125788888888888889999
Q ss_pred EEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCH-------hHHHHHHHHHhcCCC-EEEEEeccCCC
Q psy17089 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVE-------QDKLITNFLRKSGQP-IVLVINKSENI 124 (419)
Q Consensus 53 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~-------~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 124 (419)
.+|||||+. .+...+..++..+|++++|+|+.++..+ +..+.+..+...+.| +++|+||+|+.
T Consensus 88 ~iiDtPGh~---------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 88 TVIDAPGHR---------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp EEEECCCCT---------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred EEEECCCcH---------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 999999997 5666677788999999999999875433 455566666667876 89999999998
Q ss_pred CCCcc---------hhHH-hcCC----CCeEEEeeccCCCHHH
Q psy17089 125 NSSIS---------LDFY-ELGI----GNPHIISALYGNGIKN 153 (419)
Q Consensus 125 ~~~~~---------~~~~-~~~~----~~~~~vSa~~~~~v~~ 153 (419)
..... .++. ..++ .+++++||++|.|+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 42211 1222 2343 3789999999999863
No 340
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.6e-16 Score=150.62 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=90.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~ 260 (419)
...+|+++|.||||||||+|+|++.. ..++++|++|+++..+.+.+.+.++.++||||+.+.... .+-.....+.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~----~~~~g~~~l~ 145 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD----GRGRGKQVIA 145 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC---------CHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh----hhHHHHHHHH
Confidence 55799999999999999999999975 678899999999999999999999999999999765421 1122356778
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHH-HHHHH-----cCCcEEEEEEcccC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIA-NFIYE-----SGRSLIVCVNKWDS 305 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~-~~~~~-----~~~~~iiv~NK~Dl 305 (419)
.++.||++++|+|++++. .+.+.+ ..+.. ..+|.++++||+|.
T Consensus 146 ~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999999999763 333322 22322 24566777777775
No 341
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.71 E-value=5.3e-18 Score=170.92 Aligned_cols=151 Identities=26% Similarity=0.349 Sum_probs=109.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCC-CCCccceEEEEEEC------------------CeEEEEEEcCCCCC
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYP-GLTRDRHYGEGYIG------------------KKSFIIIDTGGFEP 62 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~-~~t~~~~~~~~~~~------------------~~~~~liDtpG~~~ 62 (419)
.|+|+|+|++|+|||||+++|++.. .....+ ++|.+.......+. ...+.+|||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~--v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSA--VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH--HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhccc--CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3799999999999999999999743 222222 45555433333321 12589999999985
Q ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-------------
Q psy17089 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS------------- 129 (419)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~------------- 129 (419)
.. ......+..+|++++|+|+.+++..+....+++++..+.|+++|+||+|+......
T Consensus 83 F~---------~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~ 153 (594)
T 1g7s_A 83 FT---------TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ 153 (594)
T ss_dssp CT---------TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred HH---------HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHh
Confidence 43 22234567899999999999999898888888898899999999999999743210
Q ss_pred ----------------hhHHhcCC--------------CCeEEEeeccCCCHHHHHHHHHHhcC
Q psy17089 130 ----------------LDFYELGI--------------GNPHIISALYGNGIKNFLENILTIEL 163 (419)
Q Consensus 130 ----------------~~~~~~~~--------------~~~~~vSa~~~~~v~~l~~~i~~~~~ 163 (419)
.++...++ .+++++||++|.|+++|++.|...++
T Consensus 154 ~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 01111222 26799999999999999999987654
No 342
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.71 E-value=7.1e-17 Score=147.49 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=92.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH--
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI-- 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-- 80 (419)
.+|+++|.+|||||||+|+|++...+....++++|.+.....+.+++..+.+|||||+.+... ..+.....+..++
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~--~~~~~~~~i~~~l~~ 114 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY--VNHQALELIKGFLVN 114 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE--ECHHHHHHHHHHTTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc--chHHHHHHHHHHHhc
Confidence 589999999999999999999987767788889999999999999999999999999975431 1112222222222
Q ss_pred HhCCEEEEEEeCCC-CCCHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCC
Q psy17089 81 IESDIIIFIVDGRQ-GLVEQDKLITNFLRKS-----GQPIVLVINKSENINSS 127 (419)
Q Consensus 81 ~~~d~il~v~d~~~-~~~~~~~~~~~~l~~~-----~~p~ilv~NK~Dl~~~~ 127 (419)
.++|+++||++... .+...+..+.+.++.. ..|+++|+||+|+...+
T Consensus 115 ~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 115 RTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp CEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred CCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence 37899999987653 3666666777777652 24999999999986543
No 343
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.71 E-value=1.3e-18 Score=164.26 Aligned_cols=203 Identities=20% Similarity=0.233 Sum_probs=126.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHh------CCceeeecCCCCccce-----------------------------------
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLL------GENRVITYDTPGTTRD----------------------------------- 219 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~------~~~~~~~~~~~~~t~~----------------------------------- 219 (419)
+...++++|.+|+|||||+|.|. +......+..++++..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 55789999999999999999997 3333333322221110
Q ss_pred --eeeE--eeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc
Q psy17089 220 --SIKS--LFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS 295 (419)
Q Consensus 220 --~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 295 (419)
.... .+...+.++.|+||||+.... . .....+|++++++|+..+...+. +...+. ..+
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~--------~------~v~~~~d~vl~v~d~~~~~~~~~--i~~~i~--~~~ 195 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSE--------T------AVADLTDFFLVLMLPGAGDELQG--IKKGIF--ELA 195 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCH--------H------HHHTTSSEEEEEECSCC--------CCTTHH--HHC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcch--------h------hHHhhCCEEEEEEcCCCcccHHH--HHHHHh--ccc
Confidence 0000 012257799999999996542 0 12367999999999875421110 101111 235
Q ss_pred EEEEEEcccCCChh-hHHHHHHHHHHHcCCCC------CCcEEEEeccCCCCHHHHHHHHHHHHhhcC--CCC---CHHH
Q psy17089 296 LIVCVNKWDSIIHN-QRKIIKNNIKKKLNFLS------FAMFNFISAIKLNNINSFMESINHVYDSSI--IHL---STSR 363 (419)
Q Consensus 296 ~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~--~~~---~~~~ 363 (419)
.++|+||+|+.... ......+.+...+.... ..+++++||++|.|+++|++.|.+...... ..+ .+..
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~~~~~r~~~ 275 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGKRREQ 275 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 67888999976432 22222333433333222 468999999999999999999998765321 111 2233
Q ss_pred HHHHHHHHHHc------CCCCCCCCCceeEEEEecCCCCCCEEE
Q psy17089 364 ITRALISAIKN------HPPCRKKLIRPKLRYAHQGGKNPPIIV 401 (419)
Q Consensus 364 l~~~l~~~~~~------~~~~~~~~~~~~~~~~~q~~~~~p~~~ 401 (419)
...++.+++.+ +++|..+++..+++|++|.+..||+++
T Consensus 276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 319 (337)
T 2qm8_A 276 DVKWMWALVHERLHQRLVGSAEVRQATAEAERAVAGGEHSPAAG 319 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHcCCCCHHHH
Confidence 45566666665 566666667889999999999999753
No 344
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.71 E-value=2.9e-17 Score=156.58 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCc-----eecCCCC----------------------CCccc--------------
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDA-----LVANYPG----------------------LTRDR-------------- 40 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~-----~~~~~~~----------------------~t~~~-------------- 40 (419)
.|+|+|+|++|||||||+|+|+|.... .++..|+ +|++.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999987532 2222233 23220
Q ss_pred ---------eEEEEEE-CCeEEEEEEcCCCCCcc----hhhHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCCHhHH-HHH
Q psy17089 41 ---------HYGEGYI-GKKSFIIIDTGGFEPEV----KKGIMHEMTKQTKQAIIESD-IIIFIVDGRQGLVEQDK-LIT 104 (419)
Q Consensus 41 ---------~~~~~~~-~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~~d-~il~v~d~~~~~~~~~~-~~~ 104 (419)
....+.. ++..+.+|||||+.... ++...+.+...+..++.+++ ++++|+|+...+...+. .++
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 0011111 24679999999986421 23334456666777776665 55566777765655554 366
Q ss_pred HHHHhcCCCEEEEEeccCCCCCCcc-hhHH-----h--cCCCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 105 NFLRKSGQPIVLVINKSENINSSIS-LDFY-----E--LGIGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 105 ~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~-----~--~~~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
+.+...+.|+++|+||+|+...... .+.. . .+...++++||+++.|++++++.+.+
T Consensus 191 ~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 191 KEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 6666678999999999999866542 2222 1 22235678999999999999999875
No 345
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.71 E-value=7.9e-17 Score=160.62 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=90.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce---------------ec------CCCCCCccceEEEEEECCeEEEEEEcCCCC
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL---------------VA------NYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~---------------~~------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~ 61 (419)
++|+|+|++|+|||||+++|++....+ .. ...++|.+.....+.+.+..+.+|||||+.
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 689999999999999999998643221 11 134566777777788899999999999998
Q ss_pred CcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCC
Q psy17089 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS 127 (419)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~ 127 (419)
+.. ..+..++..+|++++|+|+.++.......++..+...++|+++|+||+|+....
T Consensus 94 df~---------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 94 DFS---------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp TCC---------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred hHH---------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 433 455667899999999999999888888888888887899999999999997654
No 346
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=1e-17 Score=155.94 Aligned_cols=189 Identities=19% Similarity=0.115 Sum_probs=116.3
Q ss_pred HHHHHHhCCCCcee-cCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCC
Q psy17089 17 TLFNRLTNSRDALV-ANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG 95 (419)
Q Consensus 17 sl~n~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~ 95 (419)
+|+++++.. .+. ..+.+|.-+........++ .+.+||| ++.. ......+++++|++++|+|++++
T Consensus 32 sl~~~~~~~--~f~~~~~~pTiGd~~~~~~~~~~-~~~iwD~--qer~---------~~l~~~~~~~ad~vilV~D~~~~ 97 (301)
T 1u0l_A 32 ERILCKLRG--KFRLQNLKIYVGDRVEYTPDETG-SGVIENV--LHRK---------NLLTKPHVANVDQVILVVTVKMP 97 (301)
T ss_dssp CEEEEEECG--GGTTTTCCCCTTCEEEEECCCSS-SEEEEEE--CCCS---------CEETTTTEESCCEEEEEECSSTT
T ss_pred cEEEEEEcc--cccccCCCCCCccEEEEEEcCCC-eEEEEEE--cccc---------ceeeccccccCCEEEEEEeCCCC
Confidence 566666643 223 3332322243333322233 7899999 5522 22333578999999999999875
Q ss_pred C-CHhH-HHHHHHHHhcCCCEEEEEeccCCCCCCcc---hhHH-hcCC-CCeEEEeeccCCCHHHHHHHHHHhcCCcchh
Q psy17089 96 L-VEQD-KLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGI-GNPHIISALYGNGIKNFLENILTIELPYKKF 168 (419)
Q Consensus 96 ~-~~~~-~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~~~-~~~~-~~~~~vSa~~~~~v~~l~~~i~~~~~~~~~~ 168 (419)
. +... ..++..++..++|+++|+||+|+...+.. .++. ..+. ..++++||++|.|+++++..+..
T Consensus 98 ~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g-------- 169 (301)
T 1u0l_A 98 ETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG-------- 169 (301)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS--------
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC--------
Confidence 4 2221 33344455578999999999999765431 2222 1110 48899999999999999987541
Q ss_pred ccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCC-------CccceeeeEeeEEeCeeEEEEeCCCCC
Q psy17089 169 FKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-------GTTRDSIKSLFEYNNKKYILIDTAGIR 241 (419)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~liDtpG~~ 241 (419)
-.++++|++|+|||||+|.|.+......+... .+|.... .... .....++|+||..
T Consensus 170 --------------eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~~-~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 170 --------------KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKF-DFGGYVVDTPGFA 232 (301)
T ss_dssp --------------SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEEC-TTSCEEESSCSST
T ss_pred --------------CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEEc-CCCCEEEECcCCC
Confidence 26899999999999999999987543332222 1222211 1111 1234689999986
Q ss_pred CCC
Q psy17089 242 RRN 244 (419)
Q Consensus 242 ~~~ 244 (419)
...
T Consensus 233 ~~~ 235 (301)
T 1u0l_A 233 NLE 235 (301)
T ss_dssp TCC
T ss_pred ccC
Confidence 543
No 347
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.70 E-value=1.5e-17 Score=167.34 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=97.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEE------EEEE----CCeEEEEEEcCCCCCcchhhHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG------EGYI----GKKSFIIIDTGGFEPEVKKGIMHEM 72 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~------~~~~----~~~~~~liDtpG~~~~~~~~~~~~~ 72 (419)
.||+++|.+|||||||+|+|++.... ....+++..+.... .+.+ .+..+.+|||||++...
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~-------- 112 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH-------- 112 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT--------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH--------
Confidence 58999999999999999999986421 11122222222211 1111 25789999999987332
Q ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhc--CCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEe
Q psy17089 73 TKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKS--GQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIIS 144 (419)
Q Consensus 73 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vS 144 (419)
.....++.++|++++|+|++.. .....+...+... +.|+++|+||+|+...+.. .++. ..+. +++++|
T Consensus 113 -~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vS 188 (535)
T 3dpu_A 113 -ASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIEN-RFHRIS 188 (535)
T ss_dssp -TTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTT-CEEECC
T ss_pred -HHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCC-ceEEEe
Confidence 2334457889999999998753 3345566666654 4899999999999876554 1222 3343 699999
Q ss_pred eccCCCHHHHHHHHHHhcCCcc
Q psy17089 145 ALYGNGIKNFLENILTIELPYK 166 (419)
Q Consensus 145 a~~~~~v~~l~~~i~~~~~~~~ 166 (419)
|++|.|++++++.+.+.+....
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp C-----CTTHHHHHHHHHTCTT
T ss_pred cCcccCHHHHHHHHHHHHhccc
Confidence 9999999999999998877653
No 348
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.70 E-value=1.1e-17 Score=163.89 Aligned_cols=142 Identities=23% Similarity=0.299 Sum_probs=100.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcee------------------------------cCCCCCCccceEEEEEECCeEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV------------------------------ANYPGLTRDRHYGEGYIGKKSF 52 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~~ 52 (419)
.+|+++|++|+|||||+++|++....+. ....++|.+.....+.+.+..+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 5899999999999999999986421111 0135788888777788888999
Q ss_pred EEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCC-------CCHhHHHHHHHHHhcCC-CEEEEEeccCCC
Q psy17089 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG-------LVEQDKLITNFLRKSGQ-PIVLVINKSENI 124 (419)
Q Consensus 53 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~~~~l~~~~~-p~ilv~NK~Dl~ 124 (419)
.+|||||+. ++......++..+|++++|+|+.++ ...+..+.+..+...+. |+++|+||+|+.
T Consensus 87 ~iiDtpG~~---------~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 87 TIIDAPGHR---------DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp EECCCSSST---------THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred EEEECCCcH---------HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 999999998 4556677788999999999999986 45566666677766676 589999999998
Q ss_pred CCC--c-----c----hhHH-hcCC----CCeEEEeeccCCCHHH
Q psy17089 125 NSS--I-----S----LDFY-ELGI----GNPHIISALYGNGIKN 153 (419)
Q Consensus 125 ~~~--~-----~----~~~~-~~~~----~~~~~vSa~~~~~v~~ 153 (419)
... + . .++. ..++ .+++++||++|.|+.+
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 731 1 0 2222 2342 3689999999999973
No 349
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.70 E-value=9.6e-17 Score=147.31 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=92.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHH--H
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA--I 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~ 80 (419)
++|+++|.+|+|||||+|+|++.....+++.+++|.+.....+..++..+.+|||||+.+... ..+.+...+..+ .
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~--~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY--INDMALNIIKSFLLD 117 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE--ECHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc--chHHHHHHHHHHhhc
Confidence 589999999999999999999987666777888998888888888999999999999975421 111122222222 2
Q ss_pred HhCCEEEEEEeCCC-CCCHhHHHHHHHHHh-cC----CCEEEEEeccCCCCCCc
Q psy17089 81 IESDIIIFIVDGRQ-GLVEQDKLITNFLRK-SG----QPIVLVINKSENINSSI 128 (419)
Q Consensus 81 ~~~d~il~v~d~~~-~~~~~~~~~~~~l~~-~~----~p~ilv~NK~Dl~~~~~ 128 (419)
..+|+++||+|... .+...+..+++.+.. ++ .|+++|+||+|+...+.
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 47999999987653 466666667776654 23 69999999999876543
No 350
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.70 E-value=7.1e-17 Score=140.29 Aligned_cols=149 Identities=24% Similarity=0.194 Sum_probs=106.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEE--EEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSF--IIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
.+|+|+|++|||||||+++|++.... ....++++.+...+.+.++|..+ .+|||||+.... .....++
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~---------~~~~~~~ 99 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR---------AITSAYY 99 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS---------CCCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh---------hhhHHHh
Confidence 58999999999999999999986422 33445666777778888888755 469999987332 2234456
Q ss_pred HhCCEEEEEEeCCCCCCHhH-HHHHHHHHh---cCCCEEEEEeccCCCCCCcc-----hhHH-hcCCCCeEEEeeccCCC
Q psy17089 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (419)
Q Consensus 81 ~~~d~il~v~d~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~-----~~~~-~~~~~~~~~vSa~~~~~ 150 (419)
..++.+++|+|.....+... ..+...++. .+.|+++++||+|+...... .++. ..++ .++.+||+++.|
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~ld~Sald~~~ 178 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL-SFIETSALDSTN 178 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 78999999999875432222 223333332 36799999999999764433 2222 3344 678899999999
Q ss_pred HHHHHHHHHHhc
Q psy17089 151 IKNFLENILTIE 162 (419)
Q Consensus 151 v~~l~~~i~~~~ 162 (419)
++++++.+.+.+
T Consensus 179 v~~l~~~l~~~i 190 (191)
T 1oix_A 179 VEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 351
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.70 E-value=4.5e-17 Score=154.62 Aligned_cols=156 Identities=22% Similarity=0.232 Sum_probs=94.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCC------ceeeecCCC-------------------------------------Ccc
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGE------NRVITYDTP-------------------------------------GTT 217 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~------~~~~~~~~~-------------------------------------~~t 217 (419)
....|+++|.||+|||||+|+|++. ........+ |+|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 4689999999999999999999852 122222211 222
Q ss_pred ceeeeEe--eEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc
Q psy17089 218 RDSIKSL--FEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS 295 (419)
Q Consensus 218 ~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 295 (419)
.+..... +...+..+.++||||+.... ......+|++++|+|++.+...+... ..+ ...|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~--------------~~l~~~~d~vl~V~d~~~~~~~~~i~--~~i--l~~~ 214 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE--------------FAVADMVDMFVLLLPPAGGDELQGIK--RGI--IEMA 214 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH--------------HHHHTTCSEEEEEECCC----------------CCSC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh--------------hhHHhhCCEEEEEEcCCcchhHHHhH--HHH--HhcC
Confidence 2211111 12356789999999984321 12356799999999998763222111 111 3568
Q ss_pred EEEEEEcccCCChhhHHHHHHHHHHHcCC------CCCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 296 LIVCVNKWDSIIHNQRKIIKNNIKKKLNF------LSFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 296 ~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
.++|+||+|+.+..........+...+.. ...++++++||++|.|+++|++.|.+.+..
T Consensus 215 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 215 DLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp SEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 89999999996543322222333332222 124688999999999999999999987654
No 352
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.4e-16 Score=151.15 Aligned_cols=117 Identities=25% Similarity=0.278 Sum_probs=90.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
.+|+|||.||||||||+|+|++.. +.++++|++|+++..+.+.+.+.++.++||||+.+...+ .+....+++..++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~--~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD--GRGRGKQVIAVART 149 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------CHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh--hhHHHHHHHHHHHh
Confidence 379999999999999999999875 567899999999999999999999999999999755311 22344567788999
Q ss_pred CCEEEEEEeCCCCCCHhHHHHHHHHHh-----cCCCEEEEEeccCC
Q psy17089 83 SDIIIFIVDGRQGLVEQDKLITNFLRK-----SGQPIVLVINKSEN 123 (419)
Q Consensus 83 ~d~il~v~d~~~~~~~~~~~~~~~l~~-----~~~p~ilv~NK~Dl 123 (419)
||++++|+|+.++.. ....+...|.. ..+|.++++||+|.
T Consensus 150 ad~il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH-HKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp CSEEEEEEETTSHHH-HHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cCccccccccCccHH-HHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999986322 22334444443 24577778888874
No 353
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.69 E-value=6.6e-17 Score=169.79 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=114.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC---C--c----------eecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSR---D--A----------LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKG 67 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~---~--~----------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 67 (419)
.+|+++|++|+|||||+++|++.. + . ......++|.+.....+...+..+.+|||||++
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe------ 370 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA------ 370 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH------
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH------
Confidence 479999999999999999998631 0 0 011235677776666666678899999999997
Q ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCcc--------hhHH-hcCC
Q psy17089 68 IMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS--------LDFY-ELGI 137 (419)
Q Consensus 68 ~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~--------~~~~-~~~~ 137 (419)
++...+...+..+|++++|+|+.++...+..+++..++..++| +++|+||+|+...... .++. ..++
T Consensus 371 ---dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 371 ---DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp ---HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 5667777788999999999999998888887788888878999 7899999999863321 1222 3332
Q ss_pred ----CCeEEEeeccC--------CCHHHHHHHHHHhcCC
Q psy17089 138 ----GNPHIISALYG--------NGIKNFLENILTIELP 164 (419)
Q Consensus 138 ----~~~~~vSa~~~--------~~v~~l~~~i~~~~~~ 164 (419)
.+++++||++| .|+.+|++.|.+.++.
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 37899999999 4689999999987764
No 354
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.69 E-value=2.3e-16 Score=162.48 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=89.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce-----------ecC------CCCCCccceEEEEEECCeEEEEEEcCCCCCcch
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL-----------VAN------YPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (419)
++|+|+|++|+|||||+++|+.....+ ..+ ..++|.......+.+.+..+.+|||||+.
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~---- 88 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV---- 88 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST----
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc----
Confidence 689999999999999999998321110 111 34677777778888899999999999997
Q ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCC
Q psy17089 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS 127 (419)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~ 127 (419)
.+......++..+|++++|+|+.++.......++..+...++|+++|+||+|+....
T Consensus 89 -----df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 89 -----DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp -----TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC
T ss_pred -----chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCC
Confidence 344566778899999999999999888888888888888899999999999987643
No 355
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.69 E-value=8.2e-16 Score=148.22 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=115.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC-eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~ 261 (419)
..|+|+|.+|+|||||+++|++... .+..++.+|..+....+..++ ..+.+|||||+.+.......+ ....+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L----~~~fl~~ 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGL----GLEFLRH 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCS----CHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhh----hHHHHHH
Confidence 4689999999999999999998753 567888888887777777765 789999999986532110000 0122345
Q ss_pred HhhcCEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 262 ILEANVVILLLDAQQNISAQDIN-IANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
+..++.+++++|++ .....++. +.+.+.. ...|.++|+||+|+..... .+.+.+.+.. .+.+++++||
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~----~~~l~~~l~~-~g~~vi~iSA 306 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEA----VKALADALAR-EGLAVLPVSA 306 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHH----HHHHHHHHHT-TTSCEEECCT
T ss_pred HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHH----HHHHHHHHHh-cCCeEEEEEC
Confidence 67899999999997 33333332 2222222 3689999999999976522 2223333322 2468999999
Q ss_pred cCCCCHHHHHHHHHHHHhhcC
Q psy17089 336 IKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~~ 356 (419)
+++.|+++|++.|.+.+....
T Consensus 307 ~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 307 LTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp TTCTTHHHHHHHHHHHHHTSC
T ss_pred CCccCHHHHHHHHHHHHHhcc
Confidence 999999999999999987654
No 356
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.68 E-value=2.6e-16 Score=138.63 Aligned_cols=160 Identities=17% Similarity=0.222 Sum_probs=103.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC-CceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcc-hhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV-KKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~ 80 (419)
.+|+++|++|||||||+|+|+|.. ...+.+.+++|.... .+.+++ .+.+|||||+.... .....+.+......++
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 103 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYL 103 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHH
Confidence 479999999999999999999865 233355666666533 334444 67899999986321 0111122333333333
Q ss_pred ---HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc-------hhHH-hcC-CCCeEEEeeccC
Q psy17089 81 ---IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFY-ELG-IGNPHIISALYG 148 (419)
Q Consensus 81 ---~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-------~~~~-~~~-~~~~~~vSa~~~ 148 (419)
..++.+++++|...+....+..+..++...+.|+++|.||+|+...... .++. ..+ ....+++||+++
T Consensus 104 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~ 183 (210)
T 1pui_A 104 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK 183 (210)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred HhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCC
Confidence 5788999999998877766667778887889999999999998765321 1222 222 225689999999
Q ss_pred CCHHHHHHHHHHhcCCc
Q psy17089 149 NGIKNFLENILTIELPY 165 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~~ 165 (419)
.|++++++.|.+...+.
T Consensus 184 ~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 184 QGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp BSHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999999877654
No 357
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.1e-17 Score=139.60 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=92.1
Q ss_pred ccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceee--ecCCCCccceeeeE
Q psy17089 146 LYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVI--TYDTPGTTRDSIKS 223 (419)
Q Consensus 146 ~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~--~~~~~~~t~~~~~~ 223 (419)
....++..+.+.+.+.+..... ......++|+++|.+|||||||+|+|++..... .+..++++.+
T Consensus 21 ~~~~~~~~l~~~l~~~~~~~~~---------~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~---- 87 (193)
T 2ged_A 21 INKRKISQWREWIDEKLGGGSG---------GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---- 87 (193)
T ss_dssp TTTTBCHHHHHHHHHHC-----------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C----
T ss_pred HHHHHHHHHHHHHHHHHHhhcC---------CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee----
Confidence 3455678888888776654322 111356899999999999999999999865221 1223333322
Q ss_pred eeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCC-CCCCHHHH-HHHHHHHH-------cCC
Q psy17089 224 LFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQ-QNISAQDI-NIANFIYE-------SGR 294 (419)
Q Consensus 224 ~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~-~~~~~~~~-~~~~~~~~-------~~~ 294 (419)
+.+..+.+|||||+......+ ..+ ....+..+|++++|+|++ +..+.... .++..+.. .+.
T Consensus 88 ---~~~~~~~l~Dt~G~~~~~~~~---~~~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
T 2ged_A 88 ---YDGSGVTLVDFPGHVKLRYKL---SDY----LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 157 (193)
T ss_dssp ---CCCTTCSEEEETTCCBSSCCH---HHH----HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred ---ecCCeEEEEECCCCchHHHHH---HHH----HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCC
Confidence 256788999999997765322 111 113345699999999998 54333332 23322221 389
Q ss_pred cEEEEEEcccCCChhhHHHHHHHHHH
Q psy17089 295 SLIVCVNKWDSIIHNQRKIIKNNIKK 320 (419)
Q Consensus 295 ~~iiv~NK~Dl~~~~~~~~~~~~~~~ 320 (419)
|+++|+||+|+.+........+.+.+
T Consensus 158 p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 158 DILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp CEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred CEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 99999999999876555555544443
No 358
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.68 E-value=1.1e-16 Score=164.90 Aligned_cols=156 Identities=17% Similarity=0.212 Sum_probs=110.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCC--------------ccc----------------------------
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLT--------------RDR---------------------------- 40 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t--------------~~~---------------------------- 40 (419)
++|+|+|.+|+|||||+|+|+|.....++..|+|. ++.
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l 149 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKL 149 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHH
Confidence 58999999999999999999998766666666652 211
Q ss_pred -----------eEEEEEECC----eEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHH-
Q psy17089 41 -----------HYGEGYIGK----KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLIT- 104 (419)
Q Consensus 41 -----------~~~~~~~~~----~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~- 104 (419)
....+.+.. ..+.+|||||+.+.. .....+..++.++|+++||+|+.++.+..+..++
T Consensus 150 ~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~------~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~ 223 (695)
T 2j69_A 150 EQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE------ARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE 223 (695)
T ss_dssp HTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH------TCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH
T ss_pred hhccccccccceEEEEEccchhccCCeEEEECCCCCchh------hHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH
Confidence 000011111 358999999986322 1345667788999999999999988877776544
Q ss_pred HHHHhcCCCEEEEEeccCCCCCC---c------------chh----HHh---------cCCCCeEEEeec----------
Q psy17089 105 NFLRKSGQPIVLVINKSENINSS---I------------SLD----FYE---------LGIGNPHIISAL---------- 146 (419)
Q Consensus 105 ~~l~~~~~p~ilv~NK~Dl~~~~---~------------~~~----~~~---------~~~~~~~~vSa~---------- 146 (419)
+.+...+.|+++|+||+|+.... . ..+ ... ....+++++||+
T Consensus 224 ~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 224 NYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp HHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred HHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 45565688999999999987543 0 100 010 011368999999
Q ss_pred ----cCCCHHHHHHHHHHhcCC
Q psy17089 147 ----YGNGIKNFLENILTIELP 164 (419)
Q Consensus 147 ----~~~~v~~l~~~i~~~~~~ 164 (419)
++.|++++++.+.+.+..
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999876643
No 359
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.68 E-value=1.9e-17 Score=157.93 Aligned_cols=155 Identities=23% Similarity=0.303 Sum_probs=100.0
Q ss_pred ceeEEEEEeCCCCchhHHHHHHh------CCceeeecCCCCccc------------------------------------
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLL------GENRVITYDTPGTTR------------------------------------ 218 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~------~~~~~~~~~~~~~t~------------------------------------ 218 (419)
+...|+++|.+|+|||||+++|. |.....+...++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 56799999999999999999986 232222222221111
Q ss_pred ----eeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCC
Q psy17089 219 ----DSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR 294 (419)
Q Consensus 219 ----~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 294 (419)
+.. ..+...+..+.||||||+.... ...+..+|++++|+|++.+...+... ..+ ...
T Consensus 158 ~~t~d~i-~~~~~~~~~~iiiDTpGi~~~~--------------~~~~~~aD~vl~V~d~~~~~~~~~l~--~~~--~~~ 218 (355)
T 3p32_A 158 RATRETV-VLLEAAGFDVILIETVGVGQSE--------------VAVANMVDTFVLLTLARTGDQLQGIK--KGV--LEL 218 (355)
T ss_dssp HHHHHHH-HHHHHTTCCEEEEEECSCSSHH--------------HHHHTTCSEEEEEEESSTTCTTTTCC--TTS--GGG
T ss_pred HHHHHHH-HHHhhCCCCEEEEeCCCCCcHH--------------HHHHHhCCEEEEEECCCCCccHHHHH--HhH--hhc
Confidence 000 0012246789999999974321 12357899999999987653332211 111 246
Q ss_pred cEEEEEEcccCCChhhHHHHHHHHHHHcCCC------CCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 295 SLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL------SFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 295 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
|.++|+||+|+............+...+... ..++++++||++|.|+++|++.|.+.+..
T Consensus 219 p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 219 ADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 8999999999975544443444444433111 13689999999999999999999998765
No 360
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.68 E-value=2.3e-16 Score=162.47 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=90.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce-----------ecC------CCCCCccceEEEEEECCeEEEEEEcCCCCCcch
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL-----------VAN------YPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (419)
++|+|+|++|+|||||+|+|++....+ ..+ .+++|+......+.+++..+.+|||||+.+..
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 89 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT- 89 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH-
Confidence 689999999999999999998421111 112 34677777788889999999999999998433
Q ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCC
Q psy17089 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS 127 (419)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~ 127 (419)
..+..+++.+|++++|+|+.++.......++..+...++|+++|+||+|+....
T Consensus 90 --------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 90 --------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp --------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC
T ss_pred --------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccc
Confidence 445667889999999999999888888888888888899999999999997653
No 361
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=3.7e-17 Score=145.07 Aligned_cols=132 Identities=19% Similarity=0.254 Sum_probs=82.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCce--ecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHH
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDAL--VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 79 (419)
.++|+++|++|||||||+|+|++..... ....++++.+. .+..+.+|||||+.... .....+
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~---------~~~~~~ 75 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLR---------YKLSDY 75 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGT---------HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHH---------HHHHHH
Confidence 3699999999999999999999864211 11223333332 45689999999997332 233333
Q ss_pred HHh----CCEEEEEEeCC---CCCCHhHHHHHHHHHh------cCCCEEEEEeccCCCCCCcch-----------hHH-h
Q psy17089 80 IIE----SDIIIFIVDGR---QGLVEQDKLITNFLRK------SGQPIVLVINKSENINSSISL-----------DFY-E 134 (419)
Q Consensus 80 ~~~----~d~il~v~d~~---~~~~~~~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~~-----------~~~-~ 134 (419)
+.. +|++++|+|+. ..+.....++.+.+.. .+.|+++|+||+|+....... .+. .
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 155 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 155 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 444 89999999988 4445555666666543 478999999999998776531 111 1
Q ss_pred cCCCCeEEEeeccCCC
Q psy17089 135 LGIGNPHIISALYGNG 150 (419)
Q Consensus 135 ~~~~~~~~vSa~~~~~ 150 (419)
.+. .++++||++|.+
T Consensus 156 ~~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 RKK-SLNEVERKINEE 170 (218)
T ss_dssp HHH-HHHC--------
T ss_pred Hhc-cccccccccccc
Confidence 122 578899998764
No 362
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.67 E-value=9.9e-16 Score=157.91 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=92.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCce-----------ecC------CCCCCccceEEEEEECC-------eEEEEEEc
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDAL-----------VAN------YPGLTRDRHYGEGYIGK-------KSFIIIDT 57 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~-------~~~~liDt 57 (419)
.++|+|+|++|+|||||+++|+...+.+ ..+ ..++|.......+.+.+ ..+.||||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 3689999999999999999997532211 111 23566666666777777 89999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Q psy17089 58 GGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126 (419)
Q Consensus 58 pG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~ 126 (419)
||+. .|...+..+++.+|++++|+|+.++.......++..+...+.|+++|+||+|+...
T Consensus 90 PG~~---------df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 90 PGHV---------DFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCcc---------chHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 9998 45566777889999999999999988887777778777789999999999998754
No 363
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.67 E-value=2.4e-17 Score=162.65 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=92.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce------------------------ec------CCCCCCccceEEEEEECCeEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL------------------------VA------NYPGLTRDRHYGEGYIGKKSF 52 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~------------------------~~------~~~~~t~~~~~~~~~~~~~~~ 52 (419)
.+|+++|++|+|||||+++|+...+.+ .. ...++|++.....+.++++.+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 489999999999999999997422111 11 134678887777788889999
Q ss_pred EEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HhHHHHHHHHHhcCCC-EEEEEeccCCC
Q psy17089 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLV-------EQDKLITNFLRKSGQP-IVLVINKSENI 124 (419)
Q Consensus 53 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 124 (419)
.+|||||+. .+...+...+..+|++++|+|+.++.. .+..+.+..+...++| +++|+||+|+.
T Consensus 124 ~iiDtPGh~---------~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 124 SLLDAPGHK---------GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp EECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred EEEECCCcH---------HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 999999997 555667778899999999999987642 3455666666677887 99999999996
Q ss_pred CCC---c--------chhHH-hc-CCC-----CeEEEeeccCCCHHHHH
Q psy17089 125 NSS---I--------SLDFY-EL-GIG-----NPHIISALYGNGIKNFL 155 (419)
Q Consensus 125 ~~~---~--------~~~~~-~~-~~~-----~~~~vSa~~~~~v~~l~ 155 (419)
... . ..++. .. ++. +++++||++|.|+++++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 532 1 12222 23 442 47999999999998643
No 364
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.67 E-value=3.3e-16 Score=160.16 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=111.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCc-------------------------------------------
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTR------------------------------------------- 38 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~------------------------------------------- 38 (419)
.|+|+|+|.+|+|||||+|+|+|......+. ..+|+
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~-g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSS-SCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCC-ccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4899999999999999999999965321121 12222
Q ss_pred --------cceEEEEEE-CCeEEEEEEcCCCCCcc----hhhHHHHHHHHHHHHH-HhCCEEEEEEeCCCCCCHhHH-HH
Q psy17089 39 --------DRHYGEGYI-GKKSFIIIDTGGFEPEV----KKGIMHEMTKQTKQAI-IESDIIIFIVDGRQGLVEQDK-LI 103 (419)
Q Consensus 39 --------~~~~~~~~~-~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~-~~~d~il~v~d~~~~~~~~~~-~~ 103 (419)
+.....+.. +...+.+|||||+.... ++...+.+...+..++ ..+|++++|+|++......+. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 111222222 23468899999987521 2233344555555555 478999999999988877776 78
Q ss_pred HHHHHhcCCCEEEEEeccCCCCCCcc-hhHHh-------cCCCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 104 TNFLRKSGQPIVLVINKSENINSSIS-LDFYE-------LGIGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 104 ~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~~-------~~~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
++.+...+.|+++|+||+|+...... .++.. .++.+++++||++|.|+++|++.+.+
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 88888889999999999999876554 22221 23346788999999999999999886
No 365
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.66 E-value=7.2e-16 Score=158.22 Aligned_cols=113 Identities=18% Similarity=0.253 Sum_probs=93.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce-----------ecC------CCCCCccceEEEEEECCeEEEEEEcCCCCCcch
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL-----------VAN------YPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (419)
++|+|+|++|+|||||+++|++..... ..+ ..++|.......+.+.+..+.+|||||+.
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~---- 85 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG---- 85 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG----
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc----
Confidence 589999999999999999998432210 111 12567777777888889999999999997
Q ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCC
Q psy17089 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124 (419)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~ 124 (419)
.+......++..+|++++|+|+.++.......+++.+...+.|+++|+||+|+.
T Consensus 86 -----~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 -----DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp -----GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred -----chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 444667778899999999999999888888888888888899999999999987
No 366
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.5e-17 Score=151.25 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=56.3
Q ss_pred hCCEEEEEEeCCCC--CCHhH--HHHHHHHH---hcCCCEEEEEeccCCCCCCcc---hhHHh--cCCCCeEEEeeccCC
Q psy17089 82 ESDIIIFIVDGRQG--LVEQD--KLITNFLR---KSGQPIVLVINKSENINSSIS---LDFYE--LGIGNPHIISALYGN 149 (419)
Q Consensus 82 ~~d~il~v~d~~~~--~~~~~--~~~~~~l~---~~~~p~ilv~NK~Dl~~~~~~---~~~~~--~~~~~~~~vSa~~~~ 149 (419)
++|++++|+|++++ .+... .++....+ ..+.|+++|+||+|+...+.. .++.. .+. .++++||++|.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~e~SAk~g~ 240 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNL-QVVETSARSNV 240 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSC-CEEECBTTTTB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCC-eEEEEECCCCC
Confidence 69999999998874 33322 33333332 247899999999999754433 23332 234 78999999999
Q ss_pred CHHHHHHHHHHhc
Q psy17089 150 GIKNFLENILTIE 162 (419)
Q Consensus 150 ~v~~l~~~i~~~~ 162 (419)
|++++|+.|.+.+
T Consensus 241 gv~elf~~l~~~l 253 (255)
T 3c5h_A 241 NVDLAFSTLVQLI 253 (255)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 367
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.66 E-value=3.5e-16 Score=149.63 Aligned_cols=163 Identities=19% Similarity=0.166 Sum_probs=102.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccce-----------------------------------------
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRD----------------------------------------- 219 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~----------------------------------------- 219 (419)
.-.+|+++|.+|+|||||+|+|+|....+.+.. .+|+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 345999999999999999999999653222111 11111
Q ss_pred -------------eeeEeeE-EeCeeEEEEeCCCCCCCCcc--hHHHHHHHHHHHHHHHhhcCEEEEEecCCCCC--CHH
Q psy17089 220 -------------SIKSLFE-YNNKKYILIDTAGIRRRNKT--FEVIEKFSVIKTLKSILEANVVILLLDAQQNI--SAQ 281 (419)
Q Consensus 220 -------------~~~~~~~-~~~~~~~liDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~--~~~ 281 (419)
.....+. .....+.+|||||+.+.... ....+......+..+++.+|++|+|+|.++.. ...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 0011111 11347899999999775211 11223333455668899999999999875432 223
Q ss_pred HHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHH
Q psy17089 282 DINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMES 347 (419)
Q Consensus 282 ~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 347 (419)
...+++.+...+.|+++|+||+|+.+.... ..+.+ +........+++++|++++.++++.+..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~-~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTD--AVEIL-EGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCC--SHHHH-TTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCccc--HHHHH-cCccccccCCeEEEEECChHHhccCCCH
Confidence 345555555678899999999999864321 11112 2223334468999999999888765544
No 368
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.65 E-value=4e-16 Score=163.91 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=89.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeec---------------CCCCccceeeeEeeEEe----------------C
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITY---------------DTPGTTRDSIKSLFEYN----------------N 229 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~ 229 (419)
...+|+++|++|+|||||+++|++......+ ...|+|.......+.+. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 4579999999999999999999864221111 12355555444445554 5
Q ss_pred eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCC
Q psy17089 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSI 306 (419)
Q Consensus 230 ~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 306 (419)
..+.||||||+.++. .....+++.+|++|+|+|++++.+.++..++..+...++|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df~-----------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-----------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSC-----------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 688999999998775 234467899999999999999999999988888888899999999999986
No 369
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.65 E-value=6.7e-16 Score=154.58 Aligned_cols=117 Identities=17% Similarity=0.310 Sum_probs=95.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCc---------------eec------CCCCCCccceEEEEEECCeEEEEEEcCCC
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDA---------------LVA------NYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~---------------~~~------~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 60 (419)
+++|+|+|+.++|||||..+|+-..+. .+. ...++|+......+.|++..++||||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 368999999999999999999632211 111 23378888888899999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCC
Q psy17089 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS 127 (419)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~ 127 (419)
.+ |...+..+++-+|++++|+|+..+...+...+++.+.+.++|.++++||+|....+
T Consensus 111 vD---------F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 111 QD---------FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH 168 (548)
T ss_dssp GG---------CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC
T ss_pred HH---------HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcc
Confidence 94 44677788999999999999999999999999999999999999999999986544
No 370
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.65 E-value=5.9e-17 Score=165.49 Aligned_cols=161 Identities=26% Similarity=0.290 Sum_probs=123.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCce-----------eeecCC------CCccceeeeEeeEEeCeeEEEEeCCCCCCCCc
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENR-----------VITYDT------PGTTRDSIKSLFEYNNKKYILIDTAGIRRRNK 245 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~-----------~~~~~~------~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 245 (419)
.+|+|+|+.++|||||..+|+.... ..+.++ .|+|+......+.+++..+.|+||||+.++.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 5799999999999999999972110 001111 2778888888889999999999999998875
Q ss_pred chHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHc---
Q psy17089 246 TFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL--- 322 (419)
Q Consensus 246 ~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~--- 322 (419)
....+.++-+|++|+|+|+..+...+...+|+.+.+.++|.++++||+|....+.. ...+++.+.+
T Consensus 82 ----------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~-~~~~~i~~~l~~~ 150 (638)
T 3j25_A 82 ----------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLS-TVYQDIKEKLSAE 150 (638)
T ss_dssp ----------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSH-HHHHHHHHTTCCC
T ss_pred ----------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHH-HHHHHHHHHhCCC
Confidence 44557888999999999999999999999999999999999999999998643211 1111111111
Q ss_pred ---------------------------------------------------------CCCCCCcEEEEeccCCCCHHHHH
Q psy17089 323 ---------------------------------------------------------NFLSFAMFNFISAIKLNNINSFM 345 (419)
Q Consensus 323 ---------------------------------------------------------~~~~~~~~~~~SA~~g~gv~~l~ 345 (419)
......|++..||++|.|++.|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LL 230 (638)
T 3j25_A 151 IVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLI 230 (638)
T ss_dssp CCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHH
T ss_pred ccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHh
Confidence 11234688999999999999999
Q ss_pred HHHHHHHhhc
Q psy17089 346 ESINHVYDSS 355 (419)
Q Consensus 346 ~~i~~~~~~~ 355 (419)
+.+.+.++..
T Consensus 231 d~i~~~~p~p 240 (638)
T 3j25_A 231 EVITNKFYSS 240 (638)
T ss_dssp HHHHHSCCCS
T ss_pred hhhhccccCc
Confidence 9998876543
No 371
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.63 E-value=3.8e-16 Score=147.93 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=96.6
Q ss_pred cceeEEEEEeCCCCchhHHHHHHh------CCceeeecCCCCccce--------------------eeeE----------
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLL------GENRVITYDTPGTTRD--------------------SIKS---------- 223 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~------~~~~~~~~~~~~~t~~--------------------~~~~---------- 223 (419)
.+...|+++|.+|+|||||+|.|. +.....+...++++.. ....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 356789999999999999999996 3333333333333220 0000
Q ss_pred ---------eeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCC
Q psy17089 224 ---------LFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR 294 (419)
Q Consensus 224 ---------~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 294 (419)
.+...+.++.||||||+.+.. . .....+|++++|+|++.+...+ .+.. ...+.
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~------~--------~~~~~aD~vl~Vvd~~~~~~~~---~l~~-~~~~~ 195 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE------T--------EVARMVDCFISLQIAGGGDDLQ---GIKK-GLMEV 195 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH------H--------HHHTTCSEEEEEECC------C---CCCH-HHHHH
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH------H--------HHHHhCCEEEEEEeCCccHHHH---HHHH-hhhcc
Confidence 011346789999999985421 0 1347899999999997653211 1111 11256
Q ss_pred cEEEEEEcccCCChhhHHHHHHHHHHHcCCC------CCCcEEEEeccCCCCHHHHHHHHHHHHh
Q psy17089 295 SLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL------SFAMFNFISAIKLNNINSFMESINHVYD 353 (419)
Q Consensus 295 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 353 (419)
|.++|+||+|+.+........+.+...+... ...+++++||++|.|+++|++.|.+.+.
T Consensus 196 p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 196 ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 8899999999976543333333333322111 1357899999999999999999998765
No 372
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.63 E-value=1.6e-15 Score=145.00 Aligned_cols=154 Identities=15% Similarity=0.171 Sum_probs=101.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccce----------------------------------------
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRH---------------------------------------- 41 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~---------------------------------------- 41 (419)
.|.|+|+|++|||||||+|+|+|.... ......+|+...
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~l-p~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFL-PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCS-CCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcC-CCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 479999999999999999999986421 111112221111
Q ss_pred --------------EEEEEE-CCeEEEEEEcCCCCCcc----hhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC--HhH
Q psy17089 42 --------------YGEGYI-GKKSFIIIDTGGFEPEV----KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLV--EQD 100 (419)
Q Consensus 42 --------------~~~~~~-~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~--~~~ 100 (419)
...+.. .+..+.+|||||+.... .....+.+...+..++.++|++++|+|+..... ...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 111111 24568999999997641 234555677888889999999999998653222 222
Q ss_pred HHHHHHHHhcCCCEEEEEeccCCCCCCcc-hhHH-----hcCCCCeEEEeeccCCCHHHHHHH
Q psy17089 101 KLITNFLRKSGQPIVLVINKSENINSSIS-LDFY-----ELGIGNPHIISALYGNGIKNFLEN 157 (419)
Q Consensus 101 ~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~-~~~~-----~~~~~~~~~vSa~~~~~v~~l~~~ 157 (419)
..+++.+...+.|+++|+||+|+...... .+.. .++. +++++|+..+.++++.+..
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccC-CeEEEEECChHHhccCCCH
Confidence 44455555567899999999999876544 2222 2333 6799999998887765544
No 373
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.63 E-value=2.9e-15 Score=139.28 Aligned_cols=167 Identities=14% Similarity=0.186 Sum_probs=86.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCC--------CCccceeeeEeeEEeC--eeEEEEeCCCCCC-------C
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDT--------PGTTRDSIKSLFEYNN--KKYILIDTAGIRR-------R 243 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~--------~~~t~~~~~~~~~~~~--~~~~liDtpG~~~-------~ 243 (419)
-.++|+++|++|+|||||+|+|.+......+.. ++.........++..+ ..+.+|||||+.. .
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 458999999999999999999987633332211 1111111111222222 4788999999932 2
Q ss_pred CcchHHHHHHHHHHHHHHHhh-------------cCEEEEEecCCC-CCCHHHHHHHHHHHHcCCcEEEEEEcccCCChh
Q psy17089 244 NKTFEVIEKFSVIKTLKSILE-------------ANVVILLLDAQQ-NISAQDINIANFIYESGRSLIVCVNKWDSIIHN 309 (419)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~-------------ad~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~ 309 (419)
....+.++. ....+++. +++++++.+.+. ++...+.++++.+. .+.++++|+||+|+....
T Consensus 97 ~~l~~~l~~----~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 97 KTIISYIDE----QFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp TTHHHHHHH----HHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHH----HHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence 211111111 11123332 345777777654 47777766666554 467999999999998765
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 310 QRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
......+.+.+.+... +++++++||++| |++++|..+.+.+..
T Consensus 172 e~~~~~~~~~~~~~~~-~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 172 ERERLKKRILDEIEEH-NIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc-CCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 5443334444433333 368999999999 999999988887653
No 374
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=146.01 Aligned_cols=169 Identities=18% Similarity=0.211 Sum_probs=87.3
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCC-------Ccc-ceeeeEeeEEeC--eeEEEEeCCCCCCCCc---ch
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-------GTT-RDSIKSLFEYNN--KKYILIDTAGIRRRNK---TF 247 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~-------~~t-~~~~~~~~~~~~--~~~~liDtpG~~~~~~---~~ 247 (419)
-.++|+++|++|+|||||+|+|+|......+ .. .++ .......+...+ ..+.+|||||+..... .+
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 4578999999999999999999987532221 11 111 111111122222 2678999999965421 01
Q ss_pred HHHHHHHHHHHHHHH-----------h--hcCEEEEEecCC-CCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHH
Q psy17089 248 EVIEKFSVIKTLKSI-----------L--EANVVILLLDAQ-QNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKI 313 (419)
Q Consensus 248 ~~~e~~~~~~~~~~~-----------~--~ad~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~ 313 (419)
..+..+.......++ . .+|+++++++.+ .++...+..+++.+.. +.|+|+|+||+|+........
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~ 187 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQ 187 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHH
Confidence 111111111111222 2 255678888876 6888888888887764 899999999999987766554
Q ss_pred HHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHH
Q psy17089 314 IKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVY 352 (419)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 352 (419)
+.+.+.+.+... +++++++||+++.+++++|..+.+.+
T Consensus 188 ~k~~i~~~~~~~-~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 188 FKKQIMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHH-TCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHc-CCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 445555444433 47889999999999999888887653
No 375
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=2.9e-15 Score=141.21 Aligned_cols=89 Identities=27% Similarity=0.290 Sum_probs=65.2
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC-----------------eeEEEEeCCCCCCCCc
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-----------------KKYILIDTAGIRRRNK 245 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 245 (419)
++|+++|.||||||||+|+|++.. +.++++|++|.++..+.+.+.+ ..+.+|||||+.+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 689999999999999999999876 6788999999988777666654 4799999999976531
Q ss_pred chHHHHHHHHHHHHHHHhhcCEEEEEecCCC
Q psy17089 246 TFEVIEKFSVIKTLKSILEANVVILLLDAQQ 276 (419)
Q Consensus 246 ~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~ 276 (419)
.... .....+.+++.+|++++|+|+++
T Consensus 82 ~~~g----l~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEG----LGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGG----GTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccch----HHHHHHHHHHhcCeEEEEEecCC
Confidence 1111 11233568899999999999986
No 376
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.61 E-value=3.1e-15 Score=141.03 Aligned_cols=91 Identities=32% Similarity=0.344 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC-----------------eEEEEEEcCCCCCc
Q psy17089 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-----------------KSFIIIDTGGFEPE 63 (419)
Q Consensus 1 ~~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~ 63 (419)
|..+|+|+|.+|||||||+|+|++.. +.++++|++|+++..+.+.+.+ ..+.+|||||+...
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 77899999999999999999999875 5678899999998887777766 47999999999854
Q ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEeCCC
Q psy17089 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQ 94 (419)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~ 94 (419)
... .+.+...+..+++++|++++|+|+.+
T Consensus 80 a~~--~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASK--GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHH--HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccc--cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 211 11222345667899999999999875
No 377
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.61 E-value=1.2e-14 Score=150.33 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=89.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCce-----------e------eecCCCCccceeeeEeeEEe-------CeeEEEE
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENR-----------V------ITYDTPGTTRDSIKSLFEYN-------NKKYILI 235 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~-----------~------~~~~~~~~t~~~~~~~~~~~-------~~~~~li 235 (419)
++..+|+|+|+.++|||||..+|+.... . ......|+|+......+.+. +..+.|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 3567999999999999999999972110 0 01223477777777777664 4689999
Q ss_pred eCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC
Q psy17089 236 DTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII 307 (419)
Q Consensus 236 DtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 307 (419)
||||+.++. ....++++-+|++|+|+|+..+...+...+|+.+.+.++|.++++||+|...
T Consensus 91 DTPGHvDF~-----------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFT-----------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCH-----------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred eCCCCcccH-----------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 999998886 4445778889999999999999999999999999999999999999999854
No 378
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=145.60 Aligned_cols=155 Identities=18% Similarity=0.166 Sum_probs=81.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCC--------CCCCccceEEEEEECCe--EEEEEEcCCCCCcc-----hhh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANY--------PGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEV-----KKG 67 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~--------~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~-----~~~ 67 (419)
++|+|+|++|+|||||+|+|++...+..... ++++.+.....+..++. .+.+|||||+.+.. ...
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~ 117 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 117 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHH
Confidence 5799999999999999999987643322211 22223333333444554 68899999995331 112
Q ss_pred HHHHHHHHHHHHHHhC-------------CEEEEEEeC-CCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcch---
Q psy17089 68 IMHEMTKQTKQAIIES-------------DIIIFIVDG-RQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISL--- 130 (419)
Q Consensus 68 ~~~~~~~~~~~~~~~~-------------d~il~v~d~-~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~--- 130 (419)
+...+..++..++.++ ++++|++++ ..++...+..+.+.+. .++|+++|+||+|+...++..
T Consensus 118 i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~~k 196 (361)
T 2qag_A 118 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLK 196 (361)
T ss_dssp THHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHHHH
Confidence 2333333444455443 457788875 6677777776666664 478999999999998765441
Q ss_pred ----hHH-hcCCCCeEEEeeccCCCHHHHHHHHHH
Q psy17089 131 ----DFY-ELGIGNPHIISALYGNGIKNFLENILT 160 (419)
Q Consensus 131 ----~~~-~~~~~~~~~vSa~~~~~v~~l~~~i~~ 160 (419)
++. ..++ +++++||+++.+ ++.+..+.+
T Consensus 197 ~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 197 KRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp HHHHHHTTCC-C-CSCCCC----------CHHHHH
T ss_pred HHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHH
Confidence 112 2344 789999999887 555544443
No 379
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.61 E-value=3e-15 Score=150.02 Aligned_cols=136 Identities=21% Similarity=0.195 Sum_probs=94.4
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCcee--eecCCCCccceeeeEe---------------------------------
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV--ITYDTPGTTRDSIKSL--------------------------------- 224 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~--~~~~~~~~t~~~~~~~--------------------------------- 224 (419)
...++|+++|.+|+|||||+|+|++.... .++..++|+.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998654 4666776654221110
Q ss_pred ---eEEeC---eeEEEEeCCCCCCCCcchHHHHH---HHHHHHHHHHhhcCEEEEEecCCC-CCCHHHHHHHHHHHHcCC
Q psy17089 225 ---FEYNN---KKYILIDTAGIRRRNKTFEVIEK---FSVIKTLKSILEANVVILLLDAQQ-NISAQDINIANFIYESGR 294 (419)
Q Consensus 225 ---~~~~~---~~~~liDtpG~~~~~~~~~~~e~---~~~~~~~~~~~~ad~~i~v~d~~~-~~~~~~~~~~~~~~~~~~ 294 (419)
+.+.+ .++.||||||+.+... ..+.+ |. ..+..++..+|++++|+|+++ +....+..+++.+...+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~--~~~~~~~~f~-~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAK--QRVSRGYDFP-AVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC---------CCSCHH-HHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcch--hHHHHHhhHH-HHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCC
Confidence 00000 3689999999975321 01111 21 233467889999999999998 467777788888887889
Q ss_pred cEEEEEEcccCCChhhHHHHHHHH
Q psy17089 295 SLIVCVNKWDSIIHNQRKIIKNNI 318 (419)
Q Consensus 295 ~~iiv~NK~Dl~~~~~~~~~~~~~ 318 (419)
|+++|+||+|+.+..........+
T Consensus 220 pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp GEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CEEEEEECCCccCHHHHHHHHHHh
Confidence 999999999998776655444443
No 380
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.60 E-value=2.5e-15 Score=144.86 Aligned_cols=158 Identities=21% Similarity=0.328 Sum_probs=112.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC-eEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
..|+|+|++|||||||+++|++... ...+++.+|.+...+.+.+++ ..+.++||||+.+...+.. .+.......+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~--~L~~~fl~~~e 234 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK--GLGLEFLRHIA 234 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC--CSCHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhh--hhhHHHHHHHH
Confidence 4689999999999999999998754 467788889988888888876 8899999999864321100 01112334467
Q ss_pred hCCEEEEEEeCC-CCCCHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCcch---hHH-hcCCCCeEEEeeccCCCH
Q psy17089 82 ESDIIIFIVDGR-QGLVEQDKLITNFLRK-----SGQPIVLVINKSENINSSISL---DFY-ELGIGNPHIISALYGNGI 151 (419)
Q Consensus 82 ~~d~il~v~d~~-~~~~~~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~---~~~-~~~~~~~~~vSa~~~~~v 151 (419)
.++.+++++|.. +.+.... .+.+.+.. ...|.++|+||+|+....... +.. ..+. .++++||+++.|+
T Consensus 235 ra~~lL~vvDls~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~-~vi~iSA~~g~gi 312 (416)
T 1udx_A 235 RTRVLLYVLDAADEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGL-AVLPVSALTGAGL 312 (416)
T ss_dssp SSSEEEEEEETTSCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTS-CEEECCTTTCTTH
T ss_pred HHHhhhEEeCCccCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCC-eEEEEECCCccCH
Confidence 899999999986 2221122 22222221 368999999999998762222 222 2233 7899999999999
Q ss_pred HHHHHHHHHhcCCc
Q psy17089 152 KNFLENILTIELPY 165 (419)
Q Consensus 152 ~~l~~~i~~~~~~~ 165 (419)
+++++.|.+.+.+.
T Consensus 313 ~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 313 PALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.60 E-value=1.3e-15 Score=135.42 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=97.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCC-----ceeeecCCCCccceee--------eEee------------------EEeC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGE-----NRVITYDTPGTTRDSI--------KSLF------------------EYNN 229 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~-----~~~~~~~~~~~t~~~~--------~~~~------------------~~~~ 229 (419)
...+|+++|.+|+|||||+++|++. ....+...++++.+.. ...+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4579999999999999999999854 1233333333321110 0000 1234
Q ss_pred eeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChh
Q psy17089 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHN 309 (419)
Q Consensus 230 ~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~ 309 (419)
..+.+|||||+.... .. +...++.+++|+|++.+.... +......+.|.++|+||+|+.+..
T Consensus 109 ~d~iiidt~G~~~~~------~~--------~~~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 109 CDLLLIENVGNLICP------VD--------FDLGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAEAV 170 (221)
T ss_dssp CSEEEEEEEEBSSGG------GG--------CCCSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHHHH
T ss_pred CCEEEEeCCCCCCCC------ch--------hccccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCcch
Confidence 578899999962111 00 112478899999998864321 222233468999999999985431
Q ss_pred --hHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhcC
Q psy17089 310 --QRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 310 --~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 356 (419)
......+.+... ....+++++||++|.|++++++.+.+.+..+.
T Consensus 171 ~~~~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 171 GADVEKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp TCCHHHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 233343444332 22468999999999999999999998775543
No 382
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.59 E-value=7e-15 Score=134.17 Aligned_cols=170 Identities=16% Similarity=0.233 Sum_probs=103.5
Q ss_pred cceeEEEEEeCCCCchhHHHHHHh-----CCceeeecCCCCccc----------------eeeeEee-------------
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLL-----GENRVITYDTPGTTR----------------DSIKSLF------------- 225 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~-----~~~~~~~~~~~~~t~----------------~~~~~~~------------- 225 (419)
.+...+++.|.+||||||++++|. +.....+...++.+. +......
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 356789999999999999999998 666555543333111 0000000
Q ss_pred ------------EE-eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHH-HH----H
Q psy17089 226 ------------EY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDIN-IA----N 287 (419)
Q Consensus 226 ------------~~-~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~~----~ 287 (419)
.. .+..+.+|||||+.+... .... ......++.. +++++++|+.......+.. .. .
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~----~~~l-~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~ 165 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFL----FHEF-GVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL 165 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHH----HSHH-HHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhh----hhhh-HHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence 00 124899999999932210 0000 1112234455 8999999998765555432 11 2
Q ss_pred HHHHcCCcEEEEEEcccCCChhhHHHHHHHHH------HH------------------cCC-CCCCcEEEEeccCCCCHH
Q psy17089 288 FIYESGRSLIVCVNKWDSIIHNQRKIIKNNIK------KK------------------LNF-LSFAMFNFISAIKLNNIN 342 (419)
Q Consensus 288 ~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~------~~------------------~~~-~~~~~~~~~SA~~g~gv~ 342 (419)
.....+.|+++|+||+|+..........+.++ +. ... ....+++++||++|.|++
T Consensus 166 ~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 166 IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp HHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred HhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence 23345899999999999976543222221110 00 011 123478999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy17089 343 SFMESINHVYDSS 355 (419)
Q Consensus 343 ~l~~~i~~~~~~~ 355 (419)
+|++.+.+.+...
T Consensus 246 ~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 246 DLETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 9999999887654
No 383
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.58 E-value=4.4e-15 Score=138.10 Aligned_cols=140 Identities=20% Similarity=0.268 Sum_probs=96.4
Q ss_pred HHHHhCCEEEEEEeCCCCC-CHhH-HHHHHHHHhcCCCEEEEEeccCCCCCCc---c---hhHH-hcCCCCeEEEeeccC
Q psy17089 78 QAIIESDIIIFIVDGRQGL-VEQD-KLITNFLRKSGQPIVLVINKSENINSSI---S---LDFY-ELGIGNPHIISALYG 148 (419)
Q Consensus 78 ~~~~~~d~il~v~d~~~~~-~~~~-~~~~~~l~~~~~p~ilv~NK~Dl~~~~~---~---~~~~-~~~~~~~~~vSa~~~ 148 (419)
.+++++|++++|+|++++. +... ..++..++..++|+++|+||+|+..... . .+++ ..+. +++++||++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~-~~~~~SA~~g 153 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY-DVLKVSAKTG 153 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC-eEEEEECCCC
Confidence 4689999999999998753 4332 3344456667999999999999986542 2 2333 4565 7899999999
Q ss_pred CCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCC-------ccceee
Q psy17089 149 NGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG-------TTRDSI 221 (419)
Q Consensus 149 ~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~-------~t~~~~ 221 (419)
.|+++|++.+.. ..++++|++|+|||||+|.|. ......+.... +|...
T Consensus 154 ~gi~~L~~~l~G----------------------~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~- 209 (302)
T 2yv5_A 154 EGIDELVDYLEG----------------------FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV- 209 (302)
T ss_dssp TTHHHHHHHTTT----------------------CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-
T ss_pred CCHHHHHhhccC----------------------cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-
Confidence 999999876431 368999999999999999998 64433333221 23221
Q ss_pred eEeeEEeCeeEEEEeCCCCCCCC
Q psy17089 222 KSLFEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 222 ~~~~~~~~~~~~liDtpG~~~~~ 244 (419)
..... ...-.++||||+..+.
T Consensus 210 -~~~~~-~~~g~v~d~pg~~~~~ 230 (302)
T 2yv5_A 210 -RLIPF-GKGSFVGDTPGFSKVE 230 (302)
T ss_dssp -EEEEE-TTTEEEESSCCCSSCC
T ss_pred -EEEEc-CCCcEEEECcCcCcCc
Confidence 11122 1245789999986443
No 384
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.6e-15 Score=131.63 Aligned_cols=115 Identities=22% Similarity=0.292 Sum_probs=72.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCce--ecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL--VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 80 (419)
++|+++|.+|||||||+|+|++..... ....++++.+. .+..+.+|||||+..... .....+...+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~~ 116 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRY-----KLSDYLKTRA 116 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSSC-----CHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHHH-----HHHHHHHhhc
Confidence 689999999999999999999864211 12233333322 567788999999975431 1222233344
Q ss_pred HhCCEEEEEEeCC-CCC--CHhHHHHHHHHHh------cCCCEEEEEeccCCCCCCcc
Q psy17089 81 IESDIIIFIVDGR-QGL--VEQDKLITNFLRK------SGQPIVLVINKSENINSSIS 129 (419)
Q Consensus 81 ~~~d~il~v~d~~-~~~--~~~~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~ 129 (419)
..+|++++|+|+. ... .....++..++.. .+.|+++|+||+|+......
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 5699999999987 321 1111344444432 37899999999999776554
No 385
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.57 E-value=1.3e-15 Score=155.57 Aligned_cols=156 Identities=22% Similarity=0.253 Sum_probs=124.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCce-----------ecCCC------CCCccceEEEEEECCeEEEEEEcCCCCCcc
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDAL-----------VANYP------GLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~-----------~~~~~------~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (419)
.++|+|+|+.++|||||..+|+...+.+ ..++. |+|.......+.|.+..++|+||||+.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~--- 78 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHM--- 78 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSS---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcH---
Confidence 4789999999999999999996321111 12221 677777778889999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc---hh----------
Q psy17089 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LD---------- 131 (419)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---~~---------- 131 (419)
.|...+..+++-+|++++|+|+..+...+...+++.+.+.++|.++++||+|....+.. .+
T Consensus 79 ------DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~ 152 (638)
T 3j25_A 79 ------DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIV 152 (638)
T ss_dssp ------STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCC
T ss_pred ------HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcc
Confidence 45567788899999999999999999999999999999999999999999997654321 00
Q ss_pred ------------------------------------------------------HHhcCCCCeEEEeeccCCCHHHHHHH
Q psy17089 132 ------------------------------------------------------FYELGIGNPHIISALYGNGIKNFLEN 157 (419)
Q Consensus 132 ------------------------------------------------------~~~~~~~~~~~vSa~~~~~v~~l~~~ 157 (419)
+....+.+++..||+++.|++.|++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~ 232 (638)
T 3j25_A 153 IKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEV 232 (638)
T ss_dssp CCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHH
T ss_pred ccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhh
Confidence 00112346788899999999999999
Q ss_pred HHHhcCCcc
Q psy17089 158 ILTIELPYK 166 (419)
Q Consensus 158 i~~~~~~~~ 166 (419)
+.+.+|...
T Consensus 233 i~~~~p~p~ 241 (638)
T 3j25_A 233 ITNKFYSST 241 (638)
T ss_dssp HHHSCCCSG
T ss_pred hhccccCcc
Confidence 999888653
No 386
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.57 E-value=1.7e-14 Score=136.91 Aligned_cols=184 Identities=20% Similarity=0.173 Sum_probs=114.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE---------------------eCeeEEEEeCCCCC
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY---------------------NNKKYILIDTAGIR 241 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~liDtpG~~ 241 (419)
++|+++|.||||||||+|+|++.. ..+++++++|.++....... .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999864 45678888888766555443 24579999999997
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCC----------CCHHHHHHH-------------------------
Q psy17089 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN----------ISAQDINIA------------------------- 286 (419)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~----------~~~~~~~~~------------------------- 286 (419)
+.....+.+ ....+.+++.+|++++|+|+++. ....+..++
T Consensus 81 ~~a~~~~~l----g~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~ 156 (368)
T 2dby_A 81 KGAHKGEGL----GNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARA 156 (368)
T ss_dssp CCCCSSSCT----THHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchH----HHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhcc
Confidence 653211111 13345678999999999999862 112222111
Q ss_pred ---------------HHHH-----------------------HcCCcEEEEEEcccC--CChhhHHHHHHHHHHHcCCCC
Q psy17089 287 ---------------NFIY-----------------------ESGRSLIVCVNKWDS--IIHNQRKIIKNNIKKKLNFLS 326 (419)
Q Consensus 287 ---------------~~~~-----------------------~~~~~~iiv~NK~Dl--~~~~~~~~~~~~~~~~~~~~~ 326 (419)
..+. -..+|+++|+||.|. .+. ........+.+.... .
T Consensus 157 ~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~-~~n~~~~~v~~~a~~-~ 234 (368)
T 2dby_A 157 DRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDG-RGNPQVEAVRRKALE-E 234 (368)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTC-TTCHHHHHHHHHHHH-H
T ss_pred chhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhccc-chhhHHHHHHHHHHH-c
Confidence 0010 013799999999984 221 001122233322221 1
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc
Q psy17089 327 FAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKN 374 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~ 374 (419)
+.+++++||+.+.++.+|.+.-...+.+.. ....+.+++.++...+.
T Consensus 235 g~~vv~iSAk~E~el~eL~~~~~~~~l~~~-g~~~~gl~~li~~~~~~ 281 (368)
T 2dby_A 235 GAEVVVVSARLEAELAELSGEEARELLAAY-GLQESGLQRLARAGYRA 281 (368)
T ss_dssp TCEEEEECHHHHHHHHTSCHHHHHHHHHHT-TCCSCHHHHHHHHHHHH
T ss_pred CCeEEEeechhHHHHHHhchHHHHHHHHHh-CcchhhHHHHHHHHHHH
Confidence 368999999999888888766444333221 22234577777765543
No 387
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.55 E-value=1.3e-14 Score=145.48 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=89.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCc--eecCCCCCCccceEEE-----------------------------------
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDA--LVANYPGLTRDRHYGE----------------------------------- 44 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~--~~~~~~~~t~~~~~~~----------------------------------- 44 (419)
.++|+|+|.+|||||||+|+|++.... .++..+++++......
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 379999999999999999999997643 3556666544221110
Q ss_pred -EEECC---eEEEEEEcCCCCCcchhhHHHH--HHHHHHHHHHhCCEEEEEEeCCC-CCCHhHHHHHHHHHhcCCCEEEE
Q psy17089 45 -GYIGK---KSFIIIDTGGFEPEVKKGIMHE--MTKQTKQAIIESDIIIFIVDGRQ-GLVEQDKLITNFLRKSGQPIVLV 117 (419)
Q Consensus 45 -~~~~~---~~~~liDtpG~~~~~~~~~~~~--~~~~~~~~~~~~d~il~v~d~~~-~~~~~~~~~~~~l~~~~~p~ilv 117 (419)
+.+.+ ..+.+|||||+.+.......+. +...+..++..+|++++|+|+.. .....+..+++.++..+.|+++|
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilV 224 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVV 224 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEE
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 00011 3688999999975321111111 45566778899999999999987 46677777788887778899999
Q ss_pred EeccCCCCCCcc
Q psy17089 118 INKSENINSSIS 129 (419)
Q Consensus 118 ~NK~Dl~~~~~~ 129 (419)
+||+|+...+..
T Consensus 225 lNK~Dl~~~~el 236 (550)
T 2qpt_A 225 LNKADMVETQQL 236 (550)
T ss_dssp EECGGGSCHHHH
T ss_pred EECCCccCHHHH
Confidence 999999876554
No 388
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.50 E-value=9.2e-15 Score=138.67 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=86.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC------CCceecC-------------------------------CC------CCCcc
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNS------RDALVAN-------------------------------YP------GLTRD 39 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~------~~~~~~~-------------------------------~~------~~t~~ 39 (419)
+.|+|+|.+|||||||+|+|++. +.++... .+ ++|++
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~ 154 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRT 154 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHH
Confidence 57999999999999999999851 1111111 11 22222
Q ss_pred ceEEE--EEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEE
Q psy17089 40 RHYGE--GYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117 (419)
Q Consensus 40 ~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv 117 (419)
..... +...+..+.++||||+.... ......+|++++|+|+..+... ..+...+ ...|.++|
T Consensus 155 ~~~~~~~~~~~~~~~iliDT~Gi~~~~------------~~l~~~~d~vl~V~d~~~~~~~--~~i~~~i--l~~~~ivV 218 (349)
T 2www_A 155 TNEAILLCEGAGYDIILIETVGVGQSE------------FAVADMVDMFVLLLPPAGGDEL--QGIKRGI--IEMADLVA 218 (349)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCC--CH------------HHHHTTCSEEEEEECCC----------------CCSCSEEE
T ss_pred HHHHHHhhccCCCCEEEEECCCcchhh------------hhHHhhCCEEEEEEcCCcchhH--HHhHHHH--HhcCCEEE
Confidence 11111 12357789999999975221 1225689999999998754211 1111111 35688999
Q ss_pred EeccCCCCCCcc----hhHH---h-------cCCCCeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 118 INKSENINSSIS----LDFY---E-------LGIGNPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 118 ~NK~Dl~~~~~~----~~~~---~-------~~~~~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
+||+|+...... .++. . ....+++++||++|.|++++++.|.+.+
T Consensus 219 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 219 VTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp ECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 999998743221 1111 1 0123578999999999999999998764
No 389
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.50 E-value=9.1e-15 Score=139.29 Aligned_cols=146 Identities=21% Similarity=0.177 Sum_probs=91.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhC------CCCceecCCCCCCc-------c----------ceEE----------------
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTN------SRDALVANYPGLTR-------D----------RHYG---------------- 43 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~------~~~~~~~~~~~~t~-------~----------~~~~---------------- 43 (419)
++|+|+|.+|||||||+++|.. .+.......++.+. + ....
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 159 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRA 159 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchhHH
Confidence 5899999999999999999962 22222222222111 0 0000
Q ss_pred ------EEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEE
Q psy17089 44 ------EGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117 (419)
Q Consensus 44 ------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv 117 (419)
.+...+..+.+|||||+.... ...+..+|++++|+|+....... .+...+ ...|.++|
T Consensus 160 t~d~i~~~~~~~~~~iiiDTpGi~~~~------------~~~~~~aD~vl~V~d~~~~~~~~--~l~~~~--~~~p~ivV 223 (355)
T 3p32_A 160 TRETVVLLEAAGFDVILIETVGVGQSE------------VAVANMVDTFVLLTLARTGDQLQ--GIKKGV--LELADIVV 223 (355)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSCSSHH------------HHHHTTCSEEEEEEESSTTCTTT--TCCTTS--GGGCSEEE
T ss_pred HHHHHHHHhhCCCCEEEEeCCCCCcHH------------HHHHHhCCEEEEEECCCCCccHH--HHHHhH--hhcCCEEE
Confidence 012256789999999976221 12358899999999976432211 111111 24699999
Q ss_pred EeccCCCCCCcc----hhHHh----c-----C-CCCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 118 INKSENINSSIS----LDFYE----L-----G-IGNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 118 ~NK~Dl~~~~~~----~~~~~----~-----~-~~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
+||+|+...... .++.. . + ..+++++||++|.|++++++.|.+.++.
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999998754322 11111 1 1 2378999999999999999999887643
No 390
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.49 E-value=1.1e-14 Score=134.42 Aligned_cols=138 Identities=20% Similarity=0.289 Sum_probs=93.3
Q ss_pred HHHhCCEEEEEEeCCCCCCHhHHHHHHHHH---hcCCCEEEEEeccCCCCCCc----c---hhHH-hcCCCCeEEEeecc
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLR---KSGQPIVLVINKSENINSSI----S---LDFY-ELGIGNPHIISALY 147 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~~~~~~~l~---~~~~p~ilv~NK~Dl~~~~~----~---~~~~-~~~~~~~~~vSa~~ 147 (419)
.+.++|.+++|+|+..+....+ .+.++|. ..++|.++|+||+|+..... . .+++ ..|. +++.+||.+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~-~v~~~sa~~ 160 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY-DVYLTSSKD 160 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC-CEEECCHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 5899999999999997666555 5566663 46899999999999988744 2 3334 4576 899999999
Q ss_pred CCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCceeeecCCC-------Ccccee
Q psy17089 148 GNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-------GTTRDS 220 (419)
Q Consensus 148 ~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~-------~~t~~~ 220 (419)
+.|+++|+... +.-.++++|++|||||||+|.|.+.....++... ++|...
T Consensus 161 ~~g~~~L~~~~----------------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~ 218 (307)
T 1t9h_A 161 QDSLADIIPHF----------------------QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV 218 (307)
T ss_dssp HTTCTTTGGGG----------------------TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC
T ss_pred CCCHHHHHhhc----------------------CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH
Confidence 99887654321 1237999999999999999999987543333322 333322
Q ss_pred eeEeeEEeCeeEEEEeCCCCCCCC
Q psy17089 221 IKSLFEYNNKKYILIDTAGIRRRN 244 (419)
Q Consensus 221 ~~~~~~~~~~~~~liDtpG~~~~~ 244 (419)
. .+... ...++||||+..+.
T Consensus 219 ~--~~~~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 219 E--LIHTS--GGLVADTPGFSSLE 238 (307)
T ss_dssp C--EEEET--TEEEESSCSCSSCC
T ss_pred H--HhhcC--CEEEecCCCccccc
Confidence 1 12221 35789999997644
No 391
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=9.3e-14 Score=133.99 Aligned_cols=158 Identities=20% Similarity=0.212 Sum_probs=78.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCC------CCc--cceEEEEEECC--eEEEEEEcCCCCCcch-----hh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPG------LTR--DRHYGEGYIGK--KSFIIIDTGGFEPEVK-----KG 67 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~------~t~--~~~~~~~~~~~--~~~~liDtpG~~~~~~-----~~ 67 (419)
++|+|+|++|||||||+|+|+|....... ..+ .|. +......+..+ ..+.+|||||+..... ..
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 57999999999999999999986431111 111 111 11111122233 3678999999974310 11
Q ss_pred HHHHHHHHHHHHH-----------Hh--CCEEEEEEeCC-CCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcch---
Q psy17089 68 IMHEMTKQTKQAI-----------IE--SDIIIFIVDGR-QGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISL--- 130 (419)
Q Consensus 68 ~~~~~~~~~~~~~-----------~~--~d~il~v~d~~-~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~--- 130 (419)
+...+......++ .+ +++++|+.+++ .++.+.+..+++.+.. +.|+|+|+||+|+...++..
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k 189 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 189 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHH
Confidence 1111222222222 22 44566666665 6788888777777765 88999999999998765441
Q ss_pred ----hHH-hcCCCCeEEEeeccCCCHHHHHHHHHHhcC
Q psy17089 131 ----DFY-ELGIGNPHIISALYGNGIKNFLENILTIEL 163 (419)
Q Consensus 131 ----~~~-~~~~~~~~~vSa~~~~~v~~l~~~i~~~~~ 163 (419)
+.. ..+. +++++||+++.++++++..+...+|
T Consensus 190 ~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 190 KQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHTC-CCCCCC-----------------CC
T ss_pred HHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 111 3455 7889999999999987777765444
No 392
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.48 E-value=2e-13 Score=141.38 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=89.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCc-----------ee------cCCCCCCccceEEEEEEC-------CeEEEEEEcC
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDA-----------LV------ANYPGLTRDRHYGEGYIG-------KKSFIIIDTG 58 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~-----------~~------~~~~~~t~~~~~~~~~~~-------~~~~~liDtp 58 (419)
++|+|+|+.++|||||..+|+-..+. .. ....++|.......+.|. +..++|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 68999999999999999999632111 01 122366777777777774 5789999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Q psy17089 59 GFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126 (419)
Q Consensus 59 G~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~ 126 (419)
|+. .|...+..+++-+|++++|+|+..++..+...+++.+.+.++|.++|+||+|....
T Consensus 94 GHv---------DF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 94 GHV---------DFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp SCT---------TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred CCc---------ccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 999 45577788899999999999999999999999999999999999999999997543
No 393
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.48 E-value=1.1e-13 Score=131.43 Aligned_cols=89 Identities=34% Similarity=0.391 Sum_probs=67.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEEC---------------------CeEEEEEEcCCCC
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG---------------------KKSFIIIDTGGFE 61 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---------------------~~~~~liDtpG~~ 61 (419)
.+|+|+|.+|||||||+|+|++.. ..+.+++++|.+...+.+.+. +..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999863 446678888988887776543 3579999999997
Q ss_pred CcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCC
Q psy17089 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQ 94 (419)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~ 94 (419)
..... .+.+...+...++++|++++|+|+.+
T Consensus 81 ~~a~~--~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHK--GEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCS--SSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccc--cchHHHHHHHHHHhCCEEEEEEECCC
Confidence 54211 01122445667899999999999874
No 394
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.47 E-value=4.6e-14 Score=148.31 Aligned_cols=114 Identities=21% Similarity=0.199 Sum_probs=88.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceec---------------CCCCCCccceEEEEEEC----------------CeE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVA---------------NYPGLTRDRHYGEGYIG----------------KKS 51 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~~~ 51 (419)
++|+|+|++|+|||||+++|++..+.+.. ...++|.......+.+. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 68999999999999999999864322211 12345665555555554 678
Q ss_pred EEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCC
Q psy17089 52 FIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN 125 (419)
Q Consensus 52 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 125 (419)
+.||||||+.+. ...+..+++.+|++++|+|+.++...+...++..+...++|+++|+||+|+..
T Consensus 100 i~liDTPG~~df---------~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 100 INLIDSPGHVDF---------SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEECCCCCCSS---------CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred EEEEECcCchhh---------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 999999999843 34567788999999999999999888887777776677999999999999873
No 395
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.45 E-value=9.3e-14 Score=131.34 Aligned_cols=123 Identities=14% Similarity=0.247 Sum_probs=83.0
Q ss_pred eEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCC----------CCHHH-HHHHHHHH
Q psy17089 222 KSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN----------ISAQD-INIANFIY 290 (419)
Q Consensus 222 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~----------~~~~~-~~~~~~~~ 290 (419)
...+.+++..+.+|||+|++.....| ..+++.++++|+|+|+++. .+..+ ..+++.+.
T Consensus 185 ~~~~~~~~~~l~iwDt~GQe~~r~~w-----------~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 185 ETHFTFKDLHFKMFDVGGQRSERKKW-----------IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGGGG-----------GGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred EEEEeeCCeeEEEEeCCCchhhhHHH-----------HHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 34455667889999999995544222 2578999999999999983 22333 23455554
Q ss_pred H----cCCcEEEEEEcccCCChh-----------------hHHHHHHHHHHHcCC------CCCCcEEEEeccCCCCHHH
Q psy17089 291 E----SGRSLIVCVNKWDSIIHN-----------------QRKIIKNNIKKKLNF------LSFAMFNFISAIKLNNINS 343 (419)
Q Consensus 291 ~----~~~~~iiv~NK~Dl~~~~-----------------~~~~~~~~~~~~~~~------~~~~~~~~~SA~~g~gv~~ 343 (419)
. .+.|+++|+||+|+.... ..++..+.+...+.. ...+.++++||++|.||++
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 3 478999999999984211 122222222222111 2346889999999999999
Q ss_pred HHHHHHHHHhhc
Q psy17089 344 FMESINHVYDSS 355 (419)
Q Consensus 344 l~~~i~~~~~~~ 355 (419)
+|+++.+.+...
T Consensus 334 vF~~v~~~i~~~ 345 (353)
T 1cip_A 334 VFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999877543
No 396
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=2.6e-13 Score=126.01 Aligned_cols=159 Identities=18% Similarity=0.143 Sum_probs=80.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecC--------CCCCCccceEEEEEECC--eEEEEEEcCCCCCc-----chhh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN--------YPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPE-----VKKG 67 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~--------~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~-----~~~~ 67 (419)
++|+|+|++|||||||+|+|.+......+. .++...+......+..+ ..+.+|||||+... ....
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~ 98 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence 589999999999999999998753221111 01111111112222222 46889999998421 0112
Q ss_pred HHHHHHHHHHHHHHhC-------------CEEEEEEeCCC-CCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc----
Q psy17089 68 IMHEMTKQTKQAIIES-------------DIIIFIVDGRQ-GLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---- 129 (419)
Q Consensus 68 ~~~~~~~~~~~~~~~~-------------d~il~v~d~~~-~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~---- 129 (419)
+.+.+......++.++ ++++|+.+... ++.+.+..+++.+. ...++++|+||+|+...++.
T Consensus 99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~ 177 (301)
T 2qnr_A 99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLK 177 (301)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHHHH
Confidence 2222223333344433 33566655443 47776655555554 25799999999999865432
Q ss_pred ---hhHH-hcCCCCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 130 ---LDFY-ELGIGNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 130 ---~~~~-~~~~~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
.++. ..+. .++++||+++ |++++|..+.+.+.+
T Consensus 178 ~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 178 KRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHTTC-CCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhc
Confidence 2222 4455 7899999999 999999998876643
No 397
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.43 E-value=1e-13 Score=131.21 Aligned_cols=144 Identities=21% Similarity=0.146 Sum_probs=89.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhC------CCCceecCCCCCCcc-----------------ceEEE---------------
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTN------SRDALVANYPGLTRD-----------------RHYGE--------------- 44 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~------~~~~~~~~~~~~t~~-----------------~~~~~--------------- 44 (419)
+.|+++|++|+|||||+|.|++ .+..+....+++|.. .....
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~ 136 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQR 136 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHHH
Confidence 4799999999999999999963 333333333332220 00000
Q ss_pred -------EEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEE
Q psy17089 45 -------GYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117 (419)
Q Consensus 45 -------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv 117 (419)
+.+.+..+.+|||||+.+.. . .....+|++++|+|+..+..... +.. ...+.|.++|
T Consensus 137 ~~~~~~~~~~~~~~i~liDTpG~~~~~---------~---~~~~~aD~vl~Vvd~~~~~~~~~--l~~--~~~~~p~ivv 200 (341)
T 2p67_A 137 ARELMLLCEAAGYDVVIVETVGVGQSE---------T---EVARMVDCFISLQIAGGGDDLQG--IKK--GLMEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECCTTHH---------H---HHHTTCSEEEEEECC------CC--CCH--HHHHHCSEEE
T ss_pred HHHHHHHhhccCCCEEEEeCCCccchH---------H---HHHHhCCEEEEEEeCCccHHHHH--HHH--hhhcccCEEE
Confidence 01457789999999987322 1 12589999999999864321110 100 1125688999
Q ss_pred EeccCCCCCCcc----hhHH----hcC------CCCeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 118 INKSENINSSIS----LDFY----ELG------IGNPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 118 ~NK~Dl~~~~~~----~~~~----~~~------~~~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
+||+|+...... .++. ..+ ..+++++||++|.|++++++.|.+.+
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 999999764322 1221 112 23678999999999999999998754
No 398
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.43 E-value=6.5e-14 Score=127.75 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=98.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHh-----CCCCceecCCCCC---------------Cc-cceEEEE----------------
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLT-----NSRDALVANYPGL---------------TR-DRHYGEG---------------- 45 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~-----~~~~~~~~~~~~~---------------t~-~~~~~~~---------------- 45 (419)
+.++++|.+||||||+++.|. |.+...+...++. +. +......
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEK 94 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhhh
Confidence 468999999999999999998 7665555432221 11 0000000
Q ss_pred ---------EE-CCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHH-----HHHHHHhc
Q psy17089 46 ---------YI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKL-----ITNFLRKS 110 (419)
Q Consensus 46 ---------~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~-----~~~~l~~~ 110 (419)
.+ .+..+.+|||||+.+... ...+......++.. +++++++|+.......+.+ ........
T Consensus 95 ~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~---~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 95 FNEYLNKILRLEKENDYVLIDTPGQMETFL---FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECCSSHHHHH---HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCEEEEeCCCccchhh---hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 00 124799999999863210 00112223334456 8999999987655544422 11222335
Q ss_pred CCCEEEEEeccCCCCCCcc---hhH-----------------------------HhcCC-CCeEEEeeccCCCHHHHHHH
Q psy17089 111 GQPIVLVINKSENINSSIS---LDF-----------------------------YELGI-GNPHIISALYGNGIKNFLEN 157 (419)
Q Consensus 111 ~~p~ilv~NK~Dl~~~~~~---~~~-----------------------------~~~~~-~~~~~vSa~~~~~v~~l~~~ 157 (419)
+.|+++|+||+|+...... .++ ...+. .+++++||+++.|++++++.
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 250 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 250 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHH
Confidence 7899999999998765421 111 11222 27899999999999999999
Q ss_pred HHHhcCCc
Q psy17089 158 ILTIELPY 165 (419)
Q Consensus 158 i~~~~~~~ 165 (419)
|.+.++..
T Consensus 251 i~~~~~~~ 258 (262)
T 1yrb_A 251 AYEHYCTC 258 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 98876543
No 399
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.41 E-value=6.4e-13 Score=123.71 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=84.4
Q ss_pred eeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCC----------CCCCHHH-HHHHHH
Q psy17089 220 SIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQ----------QNISAQD-INIANF 288 (419)
Q Consensus 220 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~----------~~~~~~~-~~~~~~ 288 (419)
.....+..++..+.+|||+|+ ++++... ..+++.++++|+|+|++ +..+..+ ..+++.
T Consensus 157 i~~~~~~~~~v~l~iwDtgGQ----------e~~R~~w-~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~ 225 (327)
T 3ohm_A 157 IIEYPFDLQSVIFRMVDVGGQ----------RSERRKW-IHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRT 225 (327)
T ss_dssp EEEEEEEETTEEEEEEEECCS----------HHHHTTG-GGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH
T ss_pred EEEEEEEeeceeeEEEEcCCc----------hhHHHHH-HHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHH
Confidence 344556667789999999999 5554333 36889999999999776 2222222 234554
Q ss_pred HHH----cCCcEEEEEEcccCCChh------------------hHHHHHHHHHHHcC-----CCCCCcEEEEeccCCCCH
Q psy17089 289 IYE----SGRSLIVCVNKWDSIIHN------------------QRKIIKNNIKKKLN-----FLSFAMFNFISAIKLNNI 341 (419)
Q Consensus 289 ~~~----~~~~~iiv~NK~Dl~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~SA~~g~gv 341 (419)
+.. .+.|+++++||+|+.... ..++..+.+...+. ....+.++++||+++.||
T Consensus 226 i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV 305 (327)
T 3ohm_A 226 IITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI 305 (327)
T ss_dssp HHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHH
T ss_pred HhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHH
Confidence 443 468999999999985321 22222233332222 123457899999999999
Q ss_pred HHHHHHHHHHHhhcC
Q psy17089 342 NSFMESINHVYDSSI 356 (419)
Q Consensus 342 ~~l~~~i~~~~~~~~ 356 (419)
+++|+.+.+.+....
T Consensus 306 ~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 306 RFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999876543
No 400
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.41 E-value=1e-12 Score=122.80 Aligned_cols=124 Identities=15% Similarity=0.088 Sum_probs=84.4
Q ss_pred eeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCC----------CCCCHHH-HHHHHH
Q psy17089 220 SIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQ----------QNISAQD-INIANF 288 (419)
Q Consensus 220 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~----------~~~~~~~-~~~~~~ 288 (419)
.....+..++..+.+|||+|+ ++++..+ ..+++.++++|+|+|++ +..+..+ ..+++.
T Consensus 151 i~~~~~~~~~v~l~iwDtaGQ----------e~~R~~w-~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~ 219 (340)
T 4fid_A 151 IHEYDFVVKDIPFHLIDVGGQ----------RSERKXW-VSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKD 219 (340)
T ss_dssp CEEEEEESSSCEEEEEECCSC----------HHHHHHH-HTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHH
T ss_pred eEEEEEEeeeeeeccccCCCc----------ccccccH-HHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHH
Confidence 344455566788999999999 6665444 37899999999999998 3333333 245555
Q ss_pred HHH----cCCcEEEEEEcccCCChh-----------------hHHHHHHHHHHHc------C-----CC-----------
Q psy17089 289 IYE----SGRSLIVCVNKWDSIIHN-----------------QRKIIKNNIKKKL------N-----FL----------- 325 (419)
Q Consensus 289 ~~~----~~~~~iiv~NK~Dl~~~~-----------------~~~~~~~~~~~~~------~-----~~----------- 325 (419)
+.. .+.|+++++||+|+.... ..++..+.+...+ . ..
T Consensus 220 i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (340)
T 4fid_A 220 IMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVN 299 (340)
T ss_dssp HHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------
T ss_pred HhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccC
Confidence 543 468999999999985321 1222233344444 1 11
Q ss_pred CCCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 326 SFAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 326 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
..+.++++||+++.||+.+|+.+.+.+..
T Consensus 300 ~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 300 EKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 23678999999999999999999987654
No 401
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.39 E-value=1.6e-12 Score=115.59 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=85.2
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCc-----eeeecCCCCccceee------eEeeEE----------------------
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGEN-----RVITYDTPGTTRDSI------KSLFEY---------------------- 227 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~-----~~~~~~~~~~t~~~~------~~~~~~---------------------- 227 (419)
..++|+++|.+|||||||+++|+... ...+...++++.+.. ......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 56899999999999999999998541 111222222111100 000000
Q ss_pred eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC
Q psy17089 228 NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII 307 (419)
Q Consensus 228 ~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 307 (419)
.+..+.++||+|..... ..| -...+..+.++|+..+..... ......+.|.++|+||+|+.+
T Consensus 117 ~~~d~~~id~~g~i~~~------~s~--------~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP------ADF--------DLGTHKRIVVISTTEGDDTIE----KHPGIMKTADLIVINKIDLAD 178 (226)
T ss_dssp GGCSEEEEECCSCSSGG------GGC--------CCSCSEEEEEEEGGGCTTTTT----TCHHHHTTCSEEEEECGGGHH
T ss_pred CCCCEEEEeCCCCccCc------chh--------hhccCcEEEEEecCcchhhHh----hhhhHhhcCCEEEEeccccCc
Confidence 01145566666631110 000 012345566777543221111 011124688999999999854
Q ss_pred hh--hHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 308 HN--QRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 308 ~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
.. ......+.+... ...++++++||++|.|++++|+.+.+.+..+
T Consensus 179 ~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 179 AVGADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHTCCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 31 223233333321 2246899999999999999999998877653
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.38 E-value=1.7e-13 Score=121.62 Aligned_cols=148 Identities=11% Similarity=-0.006 Sum_probs=91.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC-----CceecCCCCCCccc--------eEEEE------------------EECCe
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSR-----DALVANYPGLTRDR--------HYGEG------------------YIGKK 50 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~-----~~~~~~~~~~t~~~--------~~~~~------------------~~~~~ 50 (419)
.++|+++|.+|||||||+++|++.. ...+...++++.|. ....+ ...+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 3689999999999999999998641 12222223322211 00111 11345
Q ss_pred EEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCC--c
Q psy17089 51 SFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS--I 128 (419)
Q Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~--~ 128 (419)
.+.+|||+|+.... .. +...++.+++|+|+..+.... ..+....+.|.++|+||+|+.... .
T Consensus 110 d~iiidt~G~~~~~------~~------~~~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~~~~~~ 173 (221)
T 2wsm_A 110 DLLLIENVGNLICP------VD------FDLGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAEAVGAD 173 (221)
T ss_dssp SEEEEEEEEBSSGG------GG------CCCSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHHHHTCC
T ss_pred CEEEEeCCCCCCCC------ch------hccccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCcchhhH
Confidence 68899999963221 00 012467899999987653221 122223468999999999986532 1
Q ss_pred c---hhHH-hcC-CCCeEEEeeccCCCHHHHHHHHHHhcCCc
Q psy17089 129 S---LDFY-ELG-IGNPHIISALYGNGIKNFLENILTIELPY 165 (419)
Q Consensus 129 ~---~~~~-~~~-~~~~~~vSa~~~~~v~~l~~~i~~~~~~~ 165 (419)
. .+.. ..+ ..+++++||++|.|++++++.|.+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 174 VEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 1 2222 222 23789999999999999999999876543
No 403
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=127.90 Aligned_cols=157 Identities=20% Similarity=0.135 Sum_probs=77.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC-----------------eeEEEEeCCCCCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-----------------KKYILIDTAGIRRR 243 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~ 243 (419)
...+|+++|.||||||||+|+|++... .++++|++|.++..+.+.+.+ ..+.+|||||+...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 568999999999999999999998864 778999999988777766543 24899999999764
Q ss_pred CcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcC
Q psy17089 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323 (419)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 323 (419)
....+ ......+.+++.+|++++|+|+++..+... +.....| +|++|.+..+......+.+.+.+.
T Consensus 100 as~~~----glg~~~l~~ir~aD~Il~VvD~~~~~~i~~------v~~~~dP----~~di~~i~~El~l~d~~~~~k~~~ 165 (396)
T 2ohf_A 100 AHNGQ----GLGNAFLSHISACDGIFHLTRAFEDDDITH------VEGSVDP----IRDIEIIHEELQLKDEEMIGPIID 165 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC------------------CTT----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhh----HHHHHHHHHHHhcCeEEEEEecCCCcchhh------hcCCCCh----HHHHHHhhhhhhhhhHHHHHHhhh
Confidence 42111 111245578999999999999985321111 1111223 344443322211111122223333
Q ss_pred CCCCCcEEEEe--ccCCCCHHHHHHHHHHHHhhc
Q psy17089 324 FLSFAMFNFIS--AIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 324 ~~~~~~~~~~S--A~~g~gv~~l~~~i~~~~~~~ 355 (419)
... ....| ++.+.+..++++.+.+.+.+.
T Consensus 166 ~~~---k~~~~~g~~~~~~~~~ll~~i~~~L~e~ 196 (396)
T 2ohf_A 166 KLE---KVAVRGGDKKLKPEYDIMCKVKSWVIDQ 196 (396)
T ss_dssp TTC---SCC--------CCHHHHHHHHHHHTTC-
T ss_pred hhh---hhhhcccchhhhhHHHHHHHHHHHHHhc
Confidence 222 12233 567778888888888877665
No 404
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.33 E-value=2.4e-12 Score=121.09 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=76.1
Q ss_pred HHhCCEEEEEEeCCCCCCHhHHHHHHHH---HhcCCCEEEEEeccCCCCCCc---c----hhHHhcCCCCeEEEeeccCC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQDKLITNFL---RKSGQPIVLVINKSENINSSI---S----LDFYELGIGNPHIISALYGN 149 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~~~~~~~l---~~~~~p~ilv~NK~Dl~~~~~---~----~~~~~~~~~~~~~vSa~~~~ 149 (419)
+.++|.+++| |+..+.. ....+.++| ...++|.++|+||+|+..... . ..|...|+ +++.+||.++.
T Consensus 128 ~anvD~v~iv-~a~~P~~-~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~-~v~~~Sa~~~~ 204 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPEL-SLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGY-RVLMVSSHTQD 204 (358)
T ss_dssp EECCCEEEEE-EESTTTC-CHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTC-CEEECBTTTTB
T ss_pred HhcCCEEEEE-EeCCCCC-CHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCC-cEEEEecCCCc
Confidence 6899999976 5554332 223455555 346899999999999987654 1 22235676 79999999999
Q ss_pred CHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCCce
Q psy17089 150 GIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENR 207 (419)
Q Consensus 150 ~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~~~ 207 (419)
|++++...+. .-.++++|++|||||||+|.|.+...
T Consensus 205 gl~~L~~~~~----------------------G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 205 GLKPLEEALT----------------------GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp THHHHHHHHT----------------------TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CHHHHHHhcC----------------------CCEEEEECCCCccHHHHHHHHhcccc
Confidence 9998776431 12689999999999999999998754
No 405
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.32 E-value=1.6e-11 Score=117.85 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=90.5
Q ss_pred eEEEEEeCCCCchhHHHHHHhCCceee---ecCCCCccceeeeEeeEEeC--eeEEEEeCCCCCCCCcc---hHHHHHHH
Q psy17089 183 IKVAIVGKPNVGKSTLINSLLGENRVI---TYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKT---FEVIEKFS 254 (419)
Q Consensus 183 ~~i~l~G~~~~GKSslin~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~---~~~~e~~~ 254 (419)
++++|+|++|+|||||+|.|+|..... ....++.+...........+ ..+.++|++|+...... +..+..+.
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 569999999999999999999874211 11123344332222222222 26789999999654211 11111111
Q ss_pred HHHH---HHHH----------hhc--C-EEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHH
Q psy17089 255 VIKT---LKSI----------LEA--N-VVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNI 318 (419)
Q Consensus 255 ~~~~---~~~~----------~~a--d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~ 318 (419)
.... +... ..+ | +++++.|+..+++..|..+++.+. .+.|+|+|+||+|.+...+...+...+
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I 201 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKI 201 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHH
Confidence 1111 1111 112 2 477788888899999999888887 789999999999999887777777777
Q ss_pred HHHcCCCCCCcEEEEe
Q psy17089 319 KKKLNFLSFAMFNFIS 334 (419)
Q Consensus 319 ~~~~~~~~~~~~~~~S 334 (419)
.+.+... +++++++|
T Consensus 202 ~~~L~~~-gi~I~~is 216 (427)
T 2qag_B 202 TSELVSN-GVQIYQFP 216 (427)
T ss_dssp HHHHBTT-BCCCCCCC
T ss_pred HHHHHHc-CCcEEecC
Confidence 7655542 34555555
No 406
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.26 E-value=9e-11 Score=106.98 Aligned_cols=141 Identities=21% Similarity=0.365 Sum_probs=88.3
Q ss_pred eeEEEEEeCCCCchhHHHHHHhCCceeeec-------CCCCccc-eeeeEeeEEeC--eeEEEEeCCCCCCCCc---chH
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLLGENRVITY-------DTPGTTR-DSIKSLFEYNN--KKYILIDTAGIRRRNK---TFE 248 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~~~~~~~~~-------~~~~~t~-~~~~~~~~~~~--~~~~liDtpG~~~~~~---~~~ 248 (419)
.++++++|++|+|||||+|.|+|......+ +.+.+.. .......+..+ ..+.++|++|...... .+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 378999999999999999999975432211 1111111 11111111111 3678999999865322 122
Q ss_pred HHHHHHHHHHHHHHh--------------hcCEEEEEecCC-CCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHH
Q psy17089 249 VIEKFSVIKTLKSIL--------------EANVVILLLDAQ-QNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKI 313 (419)
Q Consensus 249 ~~e~~~~~~~~~~~~--------------~ad~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~ 313 (419)
.++.+.......++. +++++++++|.. .++...+.++++.+.+. .++++|+||+|.....+...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~ 160 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSE 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHH
Confidence 334433222222222 358999999965 78999999999999877 99999999999998877666
Q ss_pred HHHHHHHHcC
Q psy17089 314 IKNNIKKKLN 323 (419)
Q Consensus 314 ~~~~~~~~~~ 323 (419)
....+.+.+.
T Consensus 161 ~k~~i~~~l~ 170 (270)
T 3sop_A 161 FKQRVRKELE 170 (270)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665444
No 407
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.26 E-value=4.6e-12 Score=120.60 Aligned_cols=90 Identities=27% Similarity=0.303 Sum_probs=55.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECCe-----------------EEEEEEcCCCCCcc
Q psy17089 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-----------------SFIIIDTGGFEPEV 64 (419)
Q Consensus 2 ~~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~liDtpG~~~~~ 64 (419)
..+|+|+|.+|||||||+|+|++... .++++|++|.++..+.+.+.+. .+.+|||||+....
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 35899999999999999999998753 6778899999998888877652 48999999998532
Q ss_pred hhhHHHHHHHHHHHHHHhCCEEEEEEeCCC
Q psy17089 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQ 94 (419)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~d~il~v~d~~~ 94 (419)
. ..+.+...+..+++++|++++|+|+.+
T Consensus 101 s--~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 101 H--NGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--
T ss_pred c--hhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 112233356788999999999999864
No 408
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.25 E-value=1.4e-13 Score=131.48 Aligned_cols=122 Identities=19% Similarity=0.223 Sum_probs=81.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC-----CCceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNS-----RDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTK 77 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 77 (419)
.+|+++|.+|||||||+|+|++. ....++..+++|++..... ++ ..+.++||||+.... ...+.+.....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~--~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LE-SGATLYDTPGIINHH--QMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CS-TTCEEEECCSCCCCS--SGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eC-CCeEEEeCCCcCcHH--HHHHHHhHHHH
Confidence 46999999999999999999986 4556778899998766433 32 348999999997442 01111111222
Q ss_pred HHH---HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc
Q psy17089 78 QAI---IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS 129 (419)
Q Consensus 78 ~~~---~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~ 129 (419)
..+ ...+.++|++++.+.....+...+.++...+.|+++++||+|..+....
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccH
Confidence 233 6789999999985321111212233444457899999999998776654
No 409
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.24 E-value=2.1e-11 Score=119.98 Aligned_cols=185 Identities=18% Similarity=0.245 Sum_probs=106.9
Q ss_pred ceeEEEEEeCCCCchhHHHHHHh------CCceeeecCCC---Cc--------c---ceeeeE---------------ee
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLL------GENRVITYDTP---GT--------T---RDSIKS---------------LF 225 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~------~~~~~~~~~~~---~~--------t---~~~~~~---------------~~ 225 (419)
++..|+++|.+||||||+++.|. |.....++..+ +. + ...... .+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998 66554443211 00 0 000000 01
Q ss_pred EEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcE-EEEEEccc
Q psy17089 226 EYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSL-IVCVNKWD 304 (419)
Q Consensus 226 ~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~NK~D 304 (419)
...+..+.||||||...... ...+.. ... .....+|.+++|+|++.+.. ....+..+.+. .|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~--~l~~el--~~~-~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED--SLFEEM--LQV-ANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH--HHHHHH--HHH-HHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccch--hHHHHH--HHH-HhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCc
Confidence 11467899999999965431 111111 111 11237899999999998753 44445555443 675 89999999
Q ss_pred CCChhhH-HHHHHHHHH---------HcC-CCCCCcEEEEeccCCCC-HHHHHHHHHHHHh----hcCCCCCHHH--HHH
Q psy17089 305 SIIHNQR-KIIKNNIKK---------KLN-FLSFAMFNFISAIKLNN-INSFMESINHVYD----SSIIHLSTSR--ITR 366 (419)
Q Consensus 305 l~~~~~~-~~~~~~~~~---------~~~-~~~~~~~~~~SA~~g~g-v~~l~~~i~~~~~----~~~~~~~~~~--l~~ 366 (419)
....... ......+.. .+. ...+.+.+++||..|.| +++|++.+.+... ....++.++. +++
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~~~l~d 331 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRD 331 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSGGGGCC
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 8744321 111111100 000 01123456789999999 9999999987722 2334444443 556
Q ss_pred HHHHHHH
Q psy17089 367 ALISAIK 373 (419)
Q Consensus 367 ~l~~~~~ 373 (419)
+++++..
T Consensus 332 ~~~~l~~ 338 (504)
T 2j37_W 332 MYEQFQN 338 (504)
T ss_dssp CHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 410
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.24 E-value=5e-12 Score=119.14 Aligned_cols=145 Identities=20% Similarity=0.191 Sum_probs=88.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHh------CCCCceecCCCCCCcc-----------------ceEE----------------
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLT------NSRDALVANYPGLTRD-----------------RHYG---------------- 43 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~------~~~~~~~~~~~~~t~~-----------------~~~~---------------- 43 (419)
..++|+|++|+|||||+|.|+ +.+..+....++.+.. ....
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~ 135 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAK 135 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHH
Confidence 368999999999999999997 3333333322211110 0000
Q ss_pred ------EEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEE
Q psy17089 44 ------EGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117 (419)
Q Consensus 44 ------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv 117 (419)
.+...+..+.++||||+.... . .....+|++++|+|+..+... ..+...+ ...+.+++
T Consensus 136 ~~e~~~~~~~~~~~~iliDT~Gi~~~~------~------~v~~~~d~vl~v~d~~~~~~~--~~i~~~i--~~~~~ivv 199 (337)
T 2qm8_A 136 TRETMLLCEAAGFDVILVETVGVGQSE------T------AVADLTDFFLVLMLPGAGDEL--QGIKKGI--FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSSSCH------H------HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEE
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCcch------h------hHHhhCCEEEEEEcCCCcccH--HHHHHHH--hccccEEE
Confidence 012357899999999987432 0 124789999999997532110 0010011 12466788
Q ss_pred EeccCCCCCCcc-----hhHH---h-cC------CCCeEEEeeccCCCHHHHHHHHHHhcC
Q psy17089 118 INKSENINSSIS-----LDFY---E-LG------IGNPHIISALYGNGIKNFLENILTIEL 163 (419)
Q Consensus 118 ~NK~Dl~~~~~~-----~~~~---~-~~------~~~~~~vSa~~~~~v~~l~~~i~~~~~ 163 (419)
+||+|+...... .++. . .. ..+++++||+++.|+++|++.|.+...
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899997643321 1111 0 11 246799999999999999999987653
No 411
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.21 E-value=1.1e-11 Score=117.09 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=78.7
Q ss_pred ceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCC------------CCHhHHHHHHHH
Q psy17089 40 RHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG------------LVEQDKLITNFL 107 (419)
Q Consensus 40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~------------~~~~~~~~~~~l 107 (419)
.....+.+++..+.+|||+|+. .+...+..++.++++++||+|.++. +.....++...+
T Consensus 183 i~~~~~~~~~~~l~iwDt~GQe---------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 183 IVETHFTFKDLHFKMFDVGGQR---------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp EEEEEEEETTEEEEEEEECCSG---------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred eEEEEEeeCCeeEEEEeCCCch---------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 3445667788999999999997 4455667788999999999998752 111112222222
Q ss_pred Hh---cCCCEEEEEeccCCCCCC-----------------cc---hhHHh-----c------CCCCeEEEeeccCCCHHH
Q psy17089 108 RK---SGQPIVLVINKSENINSS-----------------IS---LDFYE-----L------GIGNPHIISALYGNGIKN 153 (419)
Q Consensus 108 ~~---~~~p~ilv~NK~Dl~~~~-----------------~~---~~~~~-----~------~~~~~~~vSa~~~~~v~~ 153 (419)
.. .+.|+++|+||+|+.... .. .++.. + ..-.++++||+++.|+++
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 21 368999999999985221 11 22322 1 112568899999999999
Q ss_pred HHHHHHHhcC
Q psy17089 154 FLENILTIEL 163 (419)
Q Consensus 154 l~~~i~~~~~ 163 (419)
+|+.+.+.+.
T Consensus 334 vF~~v~~~i~ 343 (353)
T 1cip_A 334 VFDAVTDVII 343 (353)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 412
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.19 E-value=3.3e-11 Score=112.20 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=79.5
Q ss_pred ceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCC-------CC-CCHhHHHHHHHHHh--
Q psy17089 40 RHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGR-------QG-LVEQDKLITNFLRK-- 109 (419)
Q Consensus 40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~-------~~-~~~~~~~~~~~l~~-- 109 (419)
.....+.+++..+.+|||+|++ +++..+..+++++++++||+|.+ +. ....-.+...++..
T Consensus 157 i~~~~~~~~~v~l~iwDtgGQe---------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 157 IIEYPFDLQSVIFRMVDVGGQR---------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp EEEEEEEETTEEEEEEEECCSH---------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred EEEEEEEeeceeeEEEEcCCch---------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 3455677788999999999997 77778888999999999999653 11 11111222233221
Q ss_pred -----cCCCEEEEEeccCCCCCC----------------cc-----hhHH-----h------cCCCCeEEEeeccCCCHH
Q psy17089 110 -----SGQPIVLVINKSENINSS----------------IS-----LDFY-----E------LGIGNPHIISALYGNGIK 152 (419)
Q Consensus 110 -----~~~p~ilv~NK~Dl~~~~----------------~~-----~~~~-----~------~~~~~~~~vSa~~~~~v~ 152 (419)
.+.|+++++||+|+...+ .. .++. . .++ .++++||+++.|++
T Consensus 228 ~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 228 TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIR 306 (327)
T ss_dssp TSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHH
T ss_pred hhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHH
Confidence 368999999999986432 11 2221 0 112 45789999999999
Q ss_pred HHHHHHHHhcCC
Q psy17089 153 NFLENILTIELP 164 (419)
Q Consensus 153 ~l~~~i~~~~~~ 164 (419)
.+|..+.+.+..
T Consensus 307 ~vF~~v~~~Il~ 318 (327)
T 3ohm_A 307 FVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999876654
No 413
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.19 E-value=2.1e-13 Score=130.06 Aligned_cols=123 Identities=19% Similarity=0.185 Sum_probs=76.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCC------CceecCCCCCCccceEEEEEECCeEEEEEEcCCCCCcc--hhhHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSR------DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV--KKGIMHEMTK 74 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~ 74 (419)
.+|+++|.+|||||||+|+|++.. ...++..+++|++..... +++ .+.++||||+.+.. .+.+..+...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~-~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LDE-ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SSS-SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ecC-CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 469999999999999999999852 334678889998766533 222 38899999997543 1112211111
Q ss_pred HHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc
Q psy17089 75 QTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS 129 (419)
Q Consensus 75 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~ 129 (419)
. .......+.++|++++.+.....+...+.++...+.|+++++||+|..+....
T Consensus 238 ~-~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 238 L-ITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp H-HSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEH
T ss_pred H-hccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccH
Confidence 1 11135778999999874321111222233444457899999999998876655
No 414
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.18 E-value=6.6e-11 Score=109.86 Aligned_cols=136 Identities=13% Similarity=0.052 Sum_probs=87.4
Q ss_pred HHHHHHhCCceeeecCCCCccceeeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCC
Q psy17089 197 TLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQ 276 (419)
Q Consensus 197 slin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~ 276 (419)
+|++++.... +....+..|.-+........+ ..+.+||| +.++...+ ..+++.+|++|+|+|+++
T Consensus 32 sl~~~~~~~~-f~~~~~~pTiGd~~~~~~~~~-~~~~iwD~--qer~~~l~-----------~~~~~~ad~vilV~D~~~ 96 (301)
T 1u0l_A 32 ERILCKLRGK-FRLQNLKIYVGDRVEYTPDET-GSGVIENV--LHRKNLLT-----------KPHVANVDQVILVVTVKM 96 (301)
T ss_dssp CEEEEEECGG-GTTTTCCCCTTCEEEEECCCS-SSEEEEEE--CCCSCEET-----------TTTEESCCEEEEEECSST
T ss_pred cEEEEEEccc-ccccCCCCCCccEEEEEEcCC-CeEEEEEE--ccccceee-----------ccccccCCEEEEEEeCCC
Confidence 5666665432 220222222223333333222 37899999 65554322 147899999999999998
Q ss_pred CC-CHHHH-HHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHHHHHHHH
Q psy17089 277 NI-SAQDI-NIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINH 350 (419)
Q Consensus 277 ~~-~~~~~-~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~ 350 (419)
+. ++... +|+..+...++|+++|+||+|+.+....++ ...+.+.+... .+++++||++|.|++++|..+..
T Consensus 97 ~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~-~~~~~~~~~~~--~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 97 PETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRK-VRELEEIYSGL--YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp TCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH-HHHHHHHHTTT--SCEEECCTTTCTTHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHH-HHHHHHHHhhh--CcEEEEECCCCcCHHHHHHHhcC
Confidence 76 55543 456666667899999999999976543221 22233333332 68999999999999999987754
No 415
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.17 E-value=3.4e-10 Score=108.78 Aligned_cols=166 Identities=18% Similarity=0.210 Sum_probs=101.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCcee----eecCCCCccceeeeEeeEEe-CeeEEEEeCCCCCCCCcchHHHHHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRV----ITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSV 255 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~----~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~e~~~~ 255 (419)
....++++|++|+|||||+|.|.|.... .......++.... .+... ...+.++|+||...... ..+++..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~ 142 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTNF---PPDTYLE 142 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSSC---CHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchHH---HHHHHHH
Confidence 4568999999999999999999984211 1111111122111 11111 13688999999854321 1222211
Q ss_pred HHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC---------hhhHHHHHHHHHHHc----
Q psy17089 256 IKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII---------HNQRKIIKNNIKKKL---- 322 (419)
Q Consensus 256 ~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~---------~~~~~~~~~~~~~~~---- 322 (419)
. ..+...+..++ ++... ...++..+.+.+...++|+++|.||.|++- ......+.+.+.+..
T Consensus 143 ~---~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 143 K---MKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp H---TTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred H---cCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 12344465555 77654 457788888999888999999999999751 112222333333321
Q ss_pred -CC-CCCCcEEEEec--cCCCCHHHHHHHHHHHHhhcC
Q psy17089 323 -NF-LSFAMFNFISA--IKLNNINSFMESINHVYDSSI 356 (419)
Q Consensus 323 -~~-~~~~~~~~~SA--~~g~gv~~l~~~i~~~~~~~~ 356 (419)
.. .....++.+|+ .++.|+++|.+.+.+.+++..
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 11 22357899999 667789999999998877665
No 416
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.13 E-value=3.6e-11 Score=112.28 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=80.4
Q ss_pred cceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCC---------CCCH---hHHHHHHH
Q psy17089 39 DRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQ---------GLVE---QDKLITNF 106 (419)
Q Consensus 39 ~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~---------~~~~---~~~~~~~~ 106 (419)
......+.+++..+.+|||+|++ +++..+..+++++++++||+|.++ .... ...++...
T Consensus 150 Gi~~~~~~~~~v~l~iwDtaGQe---------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 150 GIHEYDFVVKDIPFHLIDVGGQR---------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp SCEEEEEESSSCEEEEEECCSCH---------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred eeEEEEEEeeeeeeccccCCCcc---------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 34455666778899999999997 778888899999999999999761 1111 11233333
Q ss_pred HHh---cCCCEEEEEeccCCCCCCc-----------------c---hhHH--hc-------------C------------
Q psy17089 107 LRK---SGQPIVLVINKSENINSSI-----------------S---LDFY--EL-------------G------------ 136 (419)
Q Consensus 107 l~~---~~~p~ilv~NK~Dl~~~~~-----------------~---~~~~--~~-------------~------------ 136 (419)
+.. .+.|+++++||+|+...+. . .++. .. .
T Consensus 221 ~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (340)
T 4fid_A 221 MTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNE 300 (340)
T ss_dssp HHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------C
T ss_pred hhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCc
Confidence 332 3689999999999864211 1 1111 11 0
Q ss_pred CCCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 137 IGNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 137 ~~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
.-.++++||++..|++.+|..+.+.+..
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 0135789999999999999998877654
No 417
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.12 E-value=6.1e-11 Score=113.17 Aligned_cols=90 Identities=26% Similarity=0.256 Sum_probs=72.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEECC-----------------eEEEEEEcCCCCCcch
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-----------------KSFIIIDTGGFEPEVK 65 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 65 (419)
.+++|+|++|||||||+|+|++...+.++.+|++|+++..+.+.+.+ ..+.+|||||+.....
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s 100 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS 100 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCc
Confidence 58999999999999999999997655788999999999999999876 4688999999874321
Q ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEeCCC
Q psy17089 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQ 94 (419)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~ 94 (419)
. .+.+...+...++.+|.+++|+|+..
T Consensus 101 ~--~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 101 T--GVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp S--SSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 11222345667889999999999864
No 418
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.12 E-value=2.9e-11 Score=107.48 Aligned_cols=52 Identities=17% Similarity=0.058 Sum_probs=38.5
Q ss_pred CCCEEEEEeccCCCCCCc--c---hhHH-hcC-CCCeEEEeeccCCCHHHHHHHHHHhc
Q psy17089 111 GQPIVLVINKSENINSSI--S---LDFY-ELG-IGNPHIISALYGNGIKNFLENILTIE 162 (419)
Q Consensus 111 ~~p~ilv~NK~Dl~~~~~--~---~~~~-~~~-~~~~~~vSa~~~~~v~~l~~~i~~~~ 162 (419)
+.|.++|+||+|+..... . .++. ..+ ..+++++||++|.|++++++.+.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 678899999999875421 1 2222 222 23789999999999999999998754
No 419
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.11 E-value=1.1e-10 Score=110.55 Aligned_cols=124 Identities=17% Similarity=0.215 Sum_probs=80.1
Q ss_pred eeeEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCC----------CCCHHH-HHHHHH
Q psy17089 220 SIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQ----------NISAQD-INIANF 288 (419)
Q Consensus 220 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~----------~~~~~~-~~~~~~ 288 (419)
.....+.+++..+.+|||||++... .. ...+++.++++|+|+|+++ ..+..+ ..++..
T Consensus 191 i~~~~~~~~~~~l~i~Dt~Gq~~~r----------~~-w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~ 259 (362)
T 1zcb_A 191 IHEYDFEIKNVPFKMVDVGGQRSER----------KR-WFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFET 259 (362)
T ss_dssp EEEEEEEETTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHH
T ss_pred eEEEEeeeCCeEEEEEeccchhhhh----------hh-HHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHH
Confidence 3345667778899999999994443 12 2257889999999999998 333333 235555
Q ss_pred HHH----cCCcEEEEEEcccCCCh------------------hhHHHHHHHHHHHc---CC---CCCCcEEEEeccCCCC
Q psy17089 289 IYE----SGRSLIVCVNKWDSIIH------------------NQRKIIKNNIKKKL---NF---LSFAMFNFISAIKLNN 340 (419)
Q Consensus 289 ~~~----~~~~~iiv~NK~Dl~~~------------------~~~~~~~~~~~~~~---~~---~~~~~~~~~SA~~g~g 340 (419)
+.. .+.|+|+|+||+|+... ...++....+...+ .. ...+.++++||++|.|
T Consensus 260 i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~n 339 (362)
T 1zcb_A 260 IVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTEN 339 (362)
T ss_dssp HHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHH
T ss_pred HhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchh
Confidence 543 46899999999998521 11222222222221 11 2346789999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy17089 341 INSFMESINHVYDS 354 (419)
Q Consensus 341 v~~l~~~i~~~~~~ 354 (419)
|+++|+.+.+.+..
T Consensus 340 V~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 340 IRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 420
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.10 E-value=1.9e-10 Score=110.40 Aligned_cols=126 Identities=25% Similarity=0.294 Sum_probs=76.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCc---eecCCCCCCccceEEEEEECC--eEEEEEEcCCCCCcch-----hhHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDA---LVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVK-----KGIMHEM 72 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~-----~~~~~~~ 72 (419)
|+++|+|++|+|||||+|.|+|.... .....++.++.......+..+ ..+.++|++|+..... ..+.+.+
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 45999999999999999999986421 111123333332222222222 2688999999864311 1111122
Q ss_pred HHHHHHHHHh-------------C--C-EEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc
Q psy17089 73 TKQTKQAIIE-------------S--D-IIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS 129 (419)
Q Consensus 73 ~~~~~~~~~~-------------~--d-~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~ 129 (419)
..++..++.. + | +++|+.|+..+....+.++++.|. .+.|+|+|+||+|.....+.
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHH
Confidence 2232222221 1 2 477788888889999998988887 68899999999998876654
No 421
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=9.6e-11 Score=111.79 Aligned_cols=93 Identities=22% Similarity=0.207 Sum_probs=73.7
Q ss_pred cceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEEeC-----------------eeEEEEeCCCCCC
Q psy17089 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-----------------KKYILIDTAGIRR 242 (419)
Q Consensus 180 ~~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~ 242 (419)
....+++++|.+|||||||+|+|++...+.++++|++|.++..+.+.+.+ ..+.+|||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 35689999999999999999999998755788999999999888887765 4688999999865
Q ss_pred CCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCC
Q psy17089 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQ 276 (419)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~ 276 (419)
.....+.+ ....+.+++.+|.+++|+|+.+
T Consensus 98 ~~s~~e~L----~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGL----GNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSS----CHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHH----HHHHHHHHHHHHHHHHHHhccc
Confidence 43222111 1234567889999999999874
No 422
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.09 E-value=5.8e-11 Score=113.48 Aligned_cols=122 Identities=16% Similarity=0.271 Sum_probs=81.7
Q ss_pred eEeeEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCC----------CCCHHHH-HHHHHHH
Q psy17089 222 KSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQ----------NISAQDI-NIANFIY 290 (419)
Q Consensus 222 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~----------~~~~~~~-~~~~~~~ 290 (419)
...+.+++..+.+|||+|+..... . ...+++.++++|+|+|+++ ..+..+. .+++.+.
T Consensus 209 ~~~~~~~~v~l~iwDtaGQe~~r~----------~-w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~ 277 (402)
T 1azs_C 209 ETKFQVDKVNFHMFDVGGQRDERR----------K-WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277 (402)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGG----------G-GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHH
T ss_pred EEEeecCCccceecccchhhhhhh----------h-hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHH
Confidence 355667788999999999955442 2 2268899999999999998 5445443 4555554
Q ss_pred H----cCCcEEEEEEcccCCChhh--------------------------------HHHHHHHHHHHcC--------CCC
Q psy17089 291 E----SGRSLIVCVNKWDSIIHNQ--------------------------------RKIIKNNIKKKLN--------FLS 326 (419)
Q Consensus 291 ~----~~~~~iiv~NK~Dl~~~~~--------------------------------~~~~~~~~~~~~~--------~~~ 326 (419)
. .+.|+++|+||+|+..... .+.....+...+. ...
T Consensus 278 ~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~ 357 (402)
T 1azs_C 278 NNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRH 357 (402)
T ss_dssp TCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSS
T ss_pred hcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCc
Confidence 3 3689999999999842211 1111111111111 112
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHHhh
Q psy17089 327 FAMFNFISAIKLNNINSFMESINHVYDS 354 (419)
Q Consensus 327 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 354 (419)
.+.++++||+++.||+++|..+.+.+..
T Consensus 358 ~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 358 YCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 3567899999999999999999887654
No 423
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.09 E-value=2.7e-10 Score=112.20 Aligned_cols=153 Identities=18% Similarity=0.270 Sum_probs=95.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHh------CCCCceecCCC--CCC------------ccceEE---------------EEEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLT------NSRDALVANYP--GLT------------RDRHYG---------------EGYI 47 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~------~~~~~~~~~~~--~~t------------~~~~~~---------------~~~~ 47 (419)
+.|+|+|.+||||||++++|+ |.+..++..-+ ..+ .+.... .+.+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~ 181 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHH
Confidence 369999999999999999998 76654443211 000 000000 0112
Q ss_pred CCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCE-EEEEeccCCCCC
Q psy17089 48 GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPI-VLVINKSENINS 126 (419)
Q Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~-ilv~NK~Dl~~~ 126 (419)
.+..+.||||||..... +.+..++... .. +..+|.+++|+|+..+.. ....++.+.+. .|+ .+|+||+|....
T Consensus 182 ~~~DvvIIDTpG~~~~~-~~l~~el~~~-~~-~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQE-DSLFEEMLQV-AN-AIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAK 255 (504)
T ss_dssp TTCCEEEEEECCCCTTC-HHHHHHHHHH-HH-HHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCC
T ss_pred CCCcEEEEeCCCCcccc-hhHHHHHHHH-Hh-hhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccc
Confidence 56789999999987432 2233333222 22 338999999999987643 33444445442 675 899999998755
Q ss_pred Ccc-hhHH-hcC-----------------CCCeEEEeeccCCC-HHHHHHHHHHh
Q psy17089 127 SIS-LDFY-ELG-----------------IGNPHIISALYGNG-IKNFLENILTI 161 (419)
Q Consensus 127 ~~~-~~~~-~~~-----------------~~~~~~vSa~~~~~-v~~l~~~i~~~ 161 (419)
... .+.. ..+ +.+...+|+..|.| +.+|++++.+.
T Consensus 256 ~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred hHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 432 1111 111 12234579999999 99999999876
No 424
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.04 E-value=6.4e-11 Score=111.86 Aligned_cols=115 Identities=15% Similarity=0.234 Sum_probs=74.7
Q ss_pred CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCC----------CCCCHHHH-HHHHHHHH----cC
Q psy17089 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQ----------QNISAQDI-NIANFIYE----SG 293 (419)
Q Consensus 229 ~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~----------~~~~~~~~-~~~~~~~~----~~ 293 (419)
...+.+|||+|+......| ..+++.++++|+|+|++ +..+..+. .+++.+.. .+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~-----------~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKW-----------IHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp --EEEEEEECCSTTGGGGT-----------GGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred ceeeEEEECCCchhhhHHH-----------HHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 3578899999996554222 26889999999999998 44334432 35555543 46
Q ss_pred CcEEEEEEcccCCChh-----------------------hHHHHHHHHHHHc------CC-----CCCCcEEEEeccCCC
Q psy17089 294 RSLIVCVNKWDSIIHN-----------------------QRKIIKNNIKKKL------NF-----LSFAMFNFISAIKLN 339 (419)
Q Consensus 294 ~~~iiv~NK~Dl~~~~-----------------------~~~~~~~~~~~~~------~~-----~~~~~~~~~SA~~g~ 339 (419)
.|+++|+||+|+.... ..++..+.+.+.+ .. .....++++||+++.
T Consensus 251 ~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~ 330 (354)
T 2xtz_A 251 TSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK 330 (354)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH
T ss_pred CeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch
Confidence 8999999999984221 0111111122221 10 123456899999999
Q ss_pred CHHHHHHHHHHHHhh
Q psy17089 340 NINSFMESINHVYDS 354 (419)
Q Consensus 340 gv~~l~~~i~~~~~~ 354 (419)
||+++|+.+.+.+..
T Consensus 331 nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 331 LVKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999887643
No 425
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.02 E-value=5e-10 Score=112.03 Aligned_cols=101 Identities=23% Similarity=0.362 Sum_probs=68.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeeeEeeEE-------eCeeEEEEeCCCCCCCCc--chHHHH
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-------NNKKYILIDTAGIRRRNK--TFEVIE 251 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~liDtpG~~~~~~--~~~~~e 251 (419)
+..+|+|+|.||||||||+|+|+|..... +.+++|.+...+.+.+ .+..+.|+||||+.+... ..+..+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 55789999999999999999999986432 5566665554444332 467899999999987543 122233
Q ss_pred HHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHH
Q psy17089 252 KFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIY 290 (419)
Q Consensus 252 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~ 290 (419)
.|... .+- ++ ++|+|+..+++.++...+..+.
T Consensus 115 ~fala----~ll-ss--~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 115 IFALA----VLL-SS--TFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp HHHHH----HHH-CS--EEEEEEESCSSHHHHHTTHHHH
T ss_pred HHHHH----HHh-cC--eEEEECCCCccHHHHHHHHHHH
Confidence 33211 111 33 6788888888899987655544
No 426
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.98 E-value=2.9e-09 Score=102.27 Aligned_cols=156 Identities=14% Similarity=0.118 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC----CceecCCCCCCccceEEEEEECC-eEEEEEEcCCCCCcchhhHHHHHHHHHHH
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSR----DALVANYPGLTRDRHYGEGYIGK-KSFIIIDTGGFEPEVKKGIMHEMTKQTKQ 78 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~----~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 78 (419)
.++|+|++|+|||||+|.|+|.. +.+......+|+. ....+... ..+.++|+||+.... . ...+.....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~-~-~~~~~L~~~-- 144 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTN-F-PPDTYLEKM-- 144 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSS-C-CHHHHHHHT--
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchH-H-HHHHHHHHc--
Confidence 79999999999999999999842 2221111112222 11122111 257899999985321 1 111211111
Q ss_pred HHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCC------------CCcc----hhHH-----hcC-
Q psy17089 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN------------SSIS----LDFY-----ELG- 136 (419)
Q Consensus 79 ~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~------------~~~~----~~~~-----~~~- 136 (419)
.+...+..++ ++... .......++..+...++|+++|.||.|+.- .... .++. ..+
T Consensus 145 ~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 145 KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2345566665 77654 567778888888888999999999998651 1111 1221 122
Q ss_pred -CCCeEEEee--ccCCCHHHHHHHHHHhcCCcch
Q psy17089 137 -IGNPHIISA--LYGNGIKNFLENILTIELPYKK 167 (419)
Q Consensus 137 -~~~~~~vSa--~~~~~v~~l~~~i~~~~~~~~~ 167 (419)
...++++|+ ..+.|++++.+.+.+.+|+.+.
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 346799999 5677899999999999998764
No 427
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.96 E-value=2.3e-09 Score=97.58 Aligned_cols=126 Identities=23% Similarity=0.288 Sum_probs=76.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceec-------CCCCCCccceEEE-EEECC--eEEEEEEcCCCCCcc-----hhh
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVA-------NYPGLTRDRHYGE-GYIGK--KSFIIIDTGGFEPEV-----KKG 67 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~-------~~~~~t~~~~~~~-~~~~~--~~~~liDtpG~~~~~-----~~~ 67 (419)
++++|+|++|+|||||+|.|+|......+ +.+.++.....+. .+..+ ..+.++|+||+.... .+.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68999999999999999999874321111 1111111111111 11112 267899999986421 111
Q ss_pred HHHHHHHHHHHHHH--------------hCCEEEEEEeC-CCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCcc
Q psy17089 68 IMHEMTKQTKQAII--------------ESDIIIFIVDG-RQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS 129 (419)
Q Consensus 68 ~~~~~~~~~~~~~~--------------~~d~il~v~d~-~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~ 129 (419)
+.+.+......... .+++.++++|. ..+..+.+..+++.+.+. .++++|+||+|.....+.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~ 158 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEK 158 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHH
Confidence 22222222222222 25788899984 478899999999999876 999999999998776554
No 428
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.94 E-value=1.6e-09 Score=108.47 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=66.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE-------CCeEEEEEEcCCCCCcch--hhHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-------GKKSFIIIDTGGFEPEVK--KGIMHEMT 73 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~liDtpG~~~~~~--~~~~~~~~ 73 (419)
.+|+|+|.||||||||+|+|+|....+ ..+++|+++..+...| .+..+.++||||+.+... ......+
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~- 115 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI- 115 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH-
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH-
Confidence 468999999999999999999976433 5566776666555544 567899999999975432 1111111
Q ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHh
Q psy17089 74 KQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK 109 (419)
Q Consensus 74 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~ 109 (419)
.....+ -++ ++|+|+...+...+..++.++.+
T Consensus 116 -fala~l-lss--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 116 -FALAVL-LSS--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp -HHHHHH-HCS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred -HHHHHH-hcC--eEEEECCCCccHHHHHHHHHHHH
Confidence 111222 233 56677777788888777666654
No 429
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.89 E-value=5.8e-08 Score=93.65 Aligned_cols=145 Identities=22% Similarity=0.245 Sum_probs=85.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHh------CCceeeecCCC----------------Cccceee---eE----------ee
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLL------GENRVITYDTP----------------GTTRDSI---KS----------LF 225 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~------~~~~~~~~~~~----------------~~t~~~~---~~----------~~ 225 (419)
++..|+++|.+|+||||++..|. |.....+...+ +...... .. ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999987 34332222111 1100000 00 00
Q ss_pred EEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccC
Q psy17089 226 EYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDS 305 (419)
Q Consensus 226 ~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl 305 (419)
...+..+.|+||||..... ....++ ...+.....+|.+++|+|++.+ .........+.+.-.+..+|+||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d--~~lm~e---l~~i~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKED--KALIEE---MKQISNVIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCC--HHHHHH---HHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccch--HHHHHH---HHHHHHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 0124689999999975543 112222 1222345568999999999976 33345556666666677899999998
Q ss_pred CChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCH
Q psy17089 306 IIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNI 341 (419)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 341 (419)
...... .. .+.. ..+.|+.+++. |+++
T Consensus 252 ~~~gG~--~l-s~~~----~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 252 SAKGGG--AL-SAVA----ATGAPIKFIGT--GEKI 278 (443)
T ss_dssp CSSHHH--HH-HHHH----TTCCCEEEEEC--SSST
T ss_pred cccccH--HH-HHHH----HHCCCEEEEEc--CCCh
Confidence 654321 11 1111 13468888886 4443
No 430
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.88 E-value=7.6e-10 Score=104.90 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=74.6
Q ss_pred ceEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCC------------CCHhHHHHHHHH
Q psy17089 40 RHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG------------LVEQDKLITNFL 107 (419)
Q Consensus 40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~------------~~~~~~~~~~~l 107 (419)
.....+.+++..+.+|||||+. .+...+..++.++++++||+|.++- +.....++...+
T Consensus 191 i~~~~~~~~~~~l~i~Dt~Gq~---------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~ 261 (362)
T 1zcb_A 191 IHEYDFEIKNVPFKMVDVGGQR---------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV 261 (362)
T ss_dssp EEEEEEEETTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHH
T ss_pred eEEEEeeeCCeEEEEEeccchh---------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHh
Confidence 3445677788999999999997 5556677788999999999998761 111122333333
Q ss_pred Hh---cCCCEEEEEeccCCCCCC------------------cc---hhHH-----hc-----C-CCCeEEEeeccCCCHH
Q psy17089 108 RK---SGQPIVLVINKSENINSS------------------IS---LDFY-----EL-----G-IGNPHIISALYGNGIK 152 (419)
Q Consensus 108 ~~---~~~p~ilv~NK~Dl~~~~------------------~~---~~~~-----~~-----~-~~~~~~vSa~~~~~v~ 152 (419)
.. .+.|+++|+||+|+.... .. .++. .+ . .-.++++||+++.|++
T Consensus 262 ~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~ 341 (362)
T 1zcb_A 262 NNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIR 341 (362)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHH
T ss_pred cchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHH
Confidence 22 368999999999986311 11 2222 11 1 1256889999999999
Q ss_pred HHHHHHHHhcC
Q psy17089 153 NFLENILTIEL 163 (419)
Q Consensus 153 ~l~~~i~~~~~ 163 (419)
++|+.+.+.+.
T Consensus 342 ~vF~~v~~~i~ 352 (362)
T 1zcb_A 342 LVFRDVKDTIL 352 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 431
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.86 E-value=2.3e-10 Score=111.02 Aligned_cols=163 Identities=19% Similarity=0.230 Sum_probs=92.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCC------ceeeecCC------------------------CCccceeeeE----eeE
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGE------NRVITYDT------------------------PGTTRDSIKS----LFE 226 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~------~~~~~~~~------------------------~~~t~~~~~~----~~~ 226 (419)
++..|+++|.+|+||||+++.|... ....+... .+++.++... ...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999752 22222111 0122221100 001
Q ss_pred EeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCC-c-EEEEEEccc
Q psy17089 227 YNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR-S-LIVCVNKWD 304 (419)
Q Consensus 227 ~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~-~iiv~NK~D 304 (419)
..+..+.|+||||..... ...+.. ......+..+|.+++|+|++.+. ......+.+. ... | ..+|+||+|
T Consensus 178 ~~~~D~vIIDT~G~~~~~--~~l~~~---l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEE--KGLLEE---MKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLD 249 (432)
T ss_dssp TSSCSEEEEECCCSCSSH--HHHHHH---HHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSS
T ss_pred hhCCCEEEEcCCCCcccc--HHHHHH---HHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCC
Confidence 246789999999986432 011111 11112233689999999998763 2233333333 335 5 899999999
Q ss_pred CCChhhHHHHHHHHHHHcCC--------------CCCCcEEEEeccCCCC-HHHHHHHHHHHHhh
Q psy17089 305 SIIHNQRKIIKNNIKKKLNF--------------LSFAMFNFISAIKLNN-INSFMESINHVYDS 354 (419)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~SA~~g~g-v~~l~~~i~~~~~~ 354 (419)
....... ... +...+.. ..+.|..++|+..|.| +..|++.+.+.+.+
T Consensus 250 ~~~~~g~--~l~-~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e 311 (432)
T 2v3c_C 250 GSAKGGG--ALS-AVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDE 311 (432)
T ss_dssp SCSTTHH--HHH-HHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCS
T ss_pred CccchHH--HHH-HHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 8643221 111 2222211 0123445678999998 88888877766544
No 432
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.75 E-value=3.3e-08 Score=90.53 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=68.7
Q ss_pred HHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 256 IKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 256 ~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
......+..+|++++|+|+.++.+..+..+-+++ .++|.++|+||+|+.+....+.+.+.++ .. +.+++++||
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~----~~-g~~~i~iSA 87 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFE----NQ-GIRSLSINS 87 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHH----TT-TCCEEECCT
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHH----hc-CCcEEEEEC
Confidence 5566889999999999999998776543333333 5899999999999987544333333332 11 358999999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q psy17089 336 IKLNNINSFMESINHVYD 353 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (419)
++|.|+++|++.+.+.+.
T Consensus 88 ~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 88 VNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TTCTTGGGHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHH
Confidence 999999999998888765
No 433
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.71 E-value=3.1e-08 Score=91.72 Aligned_cols=89 Identities=11% Similarity=0.007 Sum_probs=64.4
Q ss_pred HHHhhcCEEEEEecCCCCC-CHHHH-HHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccC
Q psy17089 260 KSILEANVVILLLDAQQNI-SAQDI-NIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~-~~~~~-~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 337 (419)
.+++++|++++|+|++++. ++... +++..+...++|+++|+||+|+.++..... .+...+.+... +.+++++||++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~-~~~~~~~~~~~-g~~~~~~SA~~ 152 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKE-LERWISIYRDA-GYDVLKVSAKT 152 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH-HHHHHHHHHHT-TCEEEECCTTT
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHH-HHHHHHHHHHC-CCeEEEEECCC
Confidence 3688999999999999874 66543 566666678999999999999987542111 11222222222 35899999999
Q ss_pred CCCHHHHHHHHHH
Q psy17089 338 LNNINSFMESINH 350 (419)
Q Consensus 338 g~gv~~l~~~i~~ 350 (419)
|.|+++|++.+..
T Consensus 153 g~gi~~L~~~l~G 165 (302)
T 2yv5_A 153 GEGIDELVDYLEG 165 (302)
T ss_dssp CTTHHHHHHHTTT
T ss_pred CCCHHHHHhhccC
Confidence 9999999987654
No 434
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.69 E-value=7.8e-09 Score=100.23 Aligned_cols=118 Identities=28% Similarity=0.407 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC------CCCceecCC------------------------CCCCccceE----EEEEECC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTN------SRDALVANY------------------------PGLTRDRHY----GEGYIGK 49 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~------~~~~~~~~~------------------------~~~t~~~~~----~~~~~~~ 49 (419)
.|+++|.+||||||+++.|.+ .+..++..- .+++.+... ....+.+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~~ 180 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK 180 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhhC
Confidence 699999999999999999975 222222110 002333210 0001156
Q ss_pred eEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCC-C-EEEEEeccCCCCCC
Q psy17089 50 KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ-P-IVLVINKSENINSS 127 (419)
Q Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~-p-~ilv~NK~Dl~~~~ 127 (419)
..+.|+||||..... ..+...+.. ...+..+|.+++|+|+..+. ......+.+.. .. | ..+|+||+|.....
T Consensus 181 ~D~vIIDT~G~~~~~-~~l~~~l~~--i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~D~~~~~ 254 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEE-KGLLEEMKQ--IKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKLDGSAKG 254 (432)
T ss_dssp CSEEEEECCCSCSSH-HHHHHHHHH--TTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECSSSCSTT
T ss_pred CCEEEEcCCCCcccc-HHHHHHHHH--HHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCCCCccch
Confidence 789999999987432 122222211 12233689999999987643 22223333332 35 5 89999999986543
No 435
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.69 E-value=1.2e-07 Score=91.45 Aligned_cols=143 Identities=21% Similarity=0.283 Sum_probs=83.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHh------CCCCceecCCCC----------------C-------CccceE------EEEEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLT------NSRDALVANYPG----------------L-------TRDRHY------GEGYI 47 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~------~~~~~~~~~~~~----------------~-------t~~~~~------~~~~~ 47 (419)
..|+++|.+||||||++..|. |.+...+..-+. + ..++.. .....
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~ 180 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh
Confidence 368999999999999999996 443332221100 0 000000 00001
Q ss_pred CCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCC
Q psy17089 48 GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS 127 (419)
Q Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~ 127 (419)
.+..+.|+||||..... +....++.. ...+..+|.+++|+|+..+. .....++.+.+.-.+..+|+||+|.....
T Consensus 181 ~~~DvVIIDTaGrl~~d-~~lm~el~~--i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~~g 255 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKED-KALIEEMKQ--ISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSAKG 255 (443)
T ss_dssp TTCSEEEEECCCCSSCC-HHHHHHHHH--HHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCSSH
T ss_pred CCCCEEEEECCCcccch-HHHHHHHHH--HHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCcccc
Confidence 34679999999976433 223333322 23345789999999988632 23444555655556778999999987654
Q ss_pred cc-hhHH-hcCCCCeEEEeeccCCCHHH
Q psy17089 128 IS-LDFY-ELGIGNPHIISALYGNGIKN 153 (419)
Q Consensus 128 ~~-~~~~-~~~~~~~~~vSa~~~~~v~~ 153 (419)
.. .... ..+. ++..++. |+++++
T Consensus 256 G~~ls~~~~~g~-PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 256 GGALSAVAATGA-PIKFIGT--GEKIDD 280 (443)
T ss_dssp HHHHHHHHTTCC-CEEEEEC--SSSTTC
T ss_pred cHHHHHHHHHCC-CEEEEEc--CCChHH
Confidence 43 2222 3444 5555663 776653
No 436
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.64 E-value=6.1e-09 Score=99.49 Aligned_cols=115 Identities=20% Similarity=0.307 Sum_probs=77.4
Q ss_pred eEEEEEECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCC----------C--CCHhHHHHHHHHH
Q psy17089 41 HYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQ----------G--LVEQDKLITNFLR 108 (419)
Q Consensus 41 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~----------~--~~~~~~~~~~~l~ 108 (419)
....+.+++..+.+|||+|++ ++...+..+++++++++||+|.++ . +.....++...+.
T Consensus 208 ~~~~~~~~~v~l~iwDtaGQe---------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 208 FETKFQVDKVNFHMFDVGGQR---------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp EEEEEEETTEEEEEEEECCSG---------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred EEEEeecCCccceecccchhh---------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 344567788999999999998 555667778899999999999875 1 1111123323332
Q ss_pred h---cCCCEEEEEeccCCCCCCc--------------------------------c---hhH-----Hhc------C--C
Q psy17089 109 K---SGQPIVLVINKSENINSSI--------------------------------S---LDF-----YEL------G--I 137 (419)
Q Consensus 109 ~---~~~p~ilv~NK~Dl~~~~~--------------------------------~---~~~-----~~~------~--~ 137 (419)
. .+.|++||+||+|+...+. . ..+ ... + .
T Consensus 279 ~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~ 358 (402)
T 1azs_C 279 NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY 358 (402)
T ss_dssp CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC
T ss_pred cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc
Confidence 1 3679999999999743110 0 112 111 1 1
Q ss_pred CCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 138 GNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 138 ~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
-.++++||+++.|++++|..+.+.+..
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 135689999999999999998876643
No 437
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.63 E-value=4e-07 Score=87.79 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=82.9
Q ss_pred ceeEEEEEeCCCCchhHHHHHHh------CCceeeecC----------------CCCccceeee---E----------ee
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLL------GENRVITYD----------------TPGTTRDSIK---S----------LF 225 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~------~~~~~~~~~----------------~~~~t~~~~~---~----------~~ 225 (419)
++..|+++|.+|+||||++..|. |.....+.. ..+....... . ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999986 333222110 0111000000 0 00
Q ss_pred EEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccC
Q psy17089 226 EYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDS 305 (419)
Q Consensus 226 ~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl 305 (419)
...+..+.++||||..........+.+. . .......++.+++|+|++.+ .......+.+.+.-.+..+|+||+|.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el--~-~i~~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEM--K-EMYDVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDG 250 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHH--H-HHHHHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHH--H-HHHHhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecccc
Confidence 1125689999999974411111122221 1 11223357999999999876 33345566666665678899999998
Q ss_pred CChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCH
Q psy17089 306 IIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNI 341 (419)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 341 (419)
...... ..... ... +.|+.+++. |+++
T Consensus 251 ~a~~G~--als~~-~~~----g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 251 TAKGGG--ALSAV-VAT----GATIKFIGT--GEKI 277 (433)
T ss_dssp CSCHHH--HHHHH-HHH----TCEEEEEEC--CSSS
T ss_pred cccchH--HHHHH-HHH----CCCEEEEEC--CCCh
Confidence 643221 11111 111 368888886 5554
No 438
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.55 E-value=1.5e-08 Score=95.58 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=69.0
Q ss_pred CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCC--------CCCCHhHH----HHHHHHHh---cCCC
Q psy17089 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGR--------QGLVEQDK----LITNFLRK---SGQP 113 (419)
Q Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~--------~~~~~~~~----~~~~~l~~---~~~p 113 (419)
...+.+|||+|++ ++......+++++++++||+|.+ +.....-. ++...+.. .+.|
T Consensus 182 ~v~l~iwDtaGQe---------~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 182 GEVYRLFDVGGQR---------NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp --EEEEEEECCST---------TGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred ceeeEEEECCCch---------hhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 3678899999998 44456677889999999999975 11111112 22222221 3689
Q ss_pred EEEEEeccCCCCCCc-----------------------c---hhHHh-----c----------CCC-CeEEEeeccCCCH
Q psy17089 114 IVLVINKSENINSSI-----------------------S---LDFYE-----L----------GIG-NPHIISALYGNGI 151 (419)
Q Consensus 114 ~ilv~NK~Dl~~~~~-----------------------~---~~~~~-----~----------~~~-~~~~vSa~~~~~v 151 (419)
+++|+||+|+...+. . .++.. . +.. .++++||+++.|+
T Consensus 253 iiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV 332 (354)
T 2xtz_A 253 FMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLV 332 (354)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHH
T ss_pred EEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhH
Confidence 999999999843210 0 12211 0 111 2488999999999
Q ss_pred HHHHHHHHHhcC
Q psy17089 152 KNFLENILTIEL 163 (419)
Q Consensus 152 ~~l~~~i~~~~~ 163 (419)
+++|+.+.+.+.
T Consensus 333 ~~vF~~v~~~I~ 344 (354)
T 2xtz_A 333 KKTFKLVDETLR 344 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 439
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.47 E-value=4.5e-07 Score=77.57 Aligned_cols=95 Identities=15% Similarity=0.009 Sum_probs=64.2
Q ss_pred HHHhhcCEEEEEecCCCCCCHHHHHHH----HHHHH----cCCcEEEEEEcc-cCCChhhHHHHHHHHHHHcCCCCCCcE
Q psy17089 260 KSILEANVVILLLDAQQNISAQDINIA----NFIYE----SGRSLIVCVNKW-DSIIHNQRKIIKNNIKKKLNFLSFAMF 330 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~~~~~~~----~~~~~----~~~~~iiv~NK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (419)
.|+..+|++|+|+|.++........-+ ..+.+ .+.|++|.+||. |+...-...++.+.+.-..- .+...+
T Consensus 121 ~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~I 199 (227)
T 3l82_B 121 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLV 199 (227)
T ss_dssp HHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEE
T ss_pred HHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEE
Confidence 688999999999999986322222212 22222 478999999995 67554444445444432111 234578
Q ss_pred EEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 331 NFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 331 ~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
..|||++|.|+.+-++|+.+.+...
T Consensus 200 q~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 200 QDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp EEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred EEeECCCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999998766543
No 440
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.46 E-value=3.2e-07 Score=88.48 Aligned_cols=141 Identities=22% Similarity=0.327 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh------CCCCceec-C---------------CCCC-------Cccce------EEEEEEC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLT------NSRDALVA-N---------------YPGL-------TRDRH------YGEGYIG 48 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~------~~~~~~~~-~---------------~~~~-------t~~~~------~~~~~~~ 48 (419)
.|+++|.+||||||++..|. |.+...+. + ..+. ..+.. .......
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~ 178 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKN 178 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhc
Confidence 58999999999999999996 33332211 1 0010 00000 0001113
Q ss_pred CeEEEEEEcCCCCC--cchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Q psy17089 49 KKSFIIIDTGGFEP--EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126 (419)
Q Consensus 49 ~~~~~liDtpG~~~--~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~ 126 (419)
+..+.++||||... .. ..+..++.. +. .....+.+++|+|+..+ ......++.+.+.-.+..+|+||+|....
T Consensus 179 ~~DvvIIDTaGr~~~~~d-~~lm~el~~-i~-~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEE-TKLLEEMKE-MY-DVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDGTAK 253 (433)
T ss_dssp TCSEEEEEECCCSSSCCT-THHHHHHHH-HH-HHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGGCSC
T ss_pred CCCEEEEECCCCccccCC-HHHHHHHHH-HH-HhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEeccccccc
Confidence 56789999999754 32 233334332 22 23367999999999853 23344556665555678899999998654
Q ss_pred Ccc-hhHH-hcCCCCeEEEeeccCCCHH
Q psy17089 127 SIS-LDFY-ELGIGNPHIISALYGNGIK 152 (419)
Q Consensus 127 ~~~-~~~~-~~~~~~~~~vSa~~~~~v~ 152 (419)
... .... ..+. ++..++. |++++
T Consensus 254 ~G~als~~~~~g~-Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 254 GGGALSAVVATGA-TIKFIGT--GEKID 278 (433)
T ss_dssp HHHHHHHHHHHTC-EEEEEEC--CSSSS
T ss_pred chHHHHHHHHHCC-CEEEEEC--CCChH
Confidence 332 2222 3344 5555553 66553
No 441
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.42 E-value=1.5e-06 Score=88.10 Aligned_cols=79 Identities=13% Similarity=0.205 Sum_probs=47.5
Q ss_pred eEEEEEEcCCCCCc----chhhHHHHHHHHHHHHHHhC-CEEEEEEeCCCCCC-HhHHHHHHHHHhcCCCEEEEEeccCC
Q psy17089 50 KSFIIIDTGGFEPE----VKKGIMHEMTKQTKQAIIES-DIIIFIVDGRQGLV-EQDKLITNFLRKSGQPIVLVINKSEN 123 (419)
Q Consensus 50 ~~~~liDtpG~~~~----~~~~~~~~~~~~~~~~~~~~-d~il~v~d~~~~~~-~~~~~~~~~l~~~~~p~ilv~NK~Dl 123 (419)
..+.++|.||+... ........+...+..++... .++++++++..... .....+++.+...+.+.++|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 35889999987532 11223345555666655554 45666666543333 23355666666668899999999999
Q ss_pred CCCCc
Q psy17089 124 INSSI 128 (419)
Q Consensus 124 ~~~~~ 128 (419)
.....
T Consensus 227 v~~g~ 231 (608)
T 3szr_A 227 VDKGT 231 (608)
T ss_dssp SSSSS
T ss_pred cCccc
Confidence 86544
No 442
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.41 E-value=1.8e-07 Score=84.60 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=62.8
Q ss_pred HHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEec
Q psy17089 256 IKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (419)
Q Consensus 256 ~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 335 (419)
......+..+|++++|+|+.++.+.....+- ++ ++|.++|+||+|+.+....+.+.+.+++ . +.++ ++||
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~~~----~-g~~v-~iSa 82 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFFKK----Q-GKRV-ITTH 82 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHHHH----T-TCCE-EECC
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHHHH----c-CCeE-EEEC
Confidence 4455788999999999999988665432221 22 8999999999999876544444443332 1 3467 9999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17089 336 IKLNNINSFMESINHV 351 (419)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (419)
++|.|+++|++.+.+.
T Consensus 83 ~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 83 KGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTSCHHHHHHHHCCCT
T ss_pred CCCcCHHHHHHHHHHh
Confidence 9999999998877654
No 443
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.37 E-value=2.5e-06 Score=78.53 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=81.8
Q ss_pred eeEEEEEeCCCCchhHHHHHHh------CCceeeecCCCC---cc-----------ceeeeE---------------eeE
Q psy17089 182 YIKVAIVGKPNVGKSTLINSLL------GENRVITYDTPG---TT-----------RDSIKS---------------LFE 226 (419)
Q Consensus 182 ~~~i~l~G~~~~GKSslin~l~------~~~~~~~~~~~~---~t-----------~~~~~~---------------~~~ 226 (419)
+..++++|.+|+||||++..|. +.....+...+. .. .+.... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999986 332222211100 00 000000 001
Q ss_pred EeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcccC
Q psy17089 227 YNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDS 305 (419)
Q Consensus 227 ~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl 305 (419)
..+..+.++||||..........+++ ...+.....+|.+++|+|++.+ .......+.+.+ ..+ ..+|+||+|.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~e---l~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEE---MKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDG 251 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHH---HHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHH---HHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCC
Confidence 13568999999998651110011111 1112344578999999999865 333444454444 456 7889999998
Q ss_pred CChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHH
Q psy17089 306 IIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSF 344 (419)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 344 (419)
..... ... .+... .+.|+.+++ .|++++++
T Consensus 252 ~~~~g--~~~-~~~~~----~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 252 TAKGG--GAL-SAVAA----TGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp CTTHH--HHH-HHHHT----TTCCEEEEE--CSSSTTCE
T ss_pred CcchH--HHH-HHHHH----HCcCEEEEe--CCCChhhc
Confidence 54322 111 12222 236887777 56676553
No 444
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.27 E-value=2.5e-06 Score=76.64 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=64.8
Q ss_pred HHHhhcCEEEEEecCCCCCCH---HHHH-HHHHHH---H-cCCcEEEEEEc-ccCCChhhHHHHHHHHHHHcCCCCCCcE
Q psy17089 260 KSILEANVVILLLDAQQNISA---QDIN-IANFIY---E-SGRSLIVCVNK-WDSIIHNQRKIIKNNIKKKLNFLSFAMF 330 (419)
Q Consensus 260 ~~~~~ad~~i~v~d~~~~~~~---~~~~-~~~~~~---~-~~~~~iiv~NK-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (419)
.|+..+|++|+|+|.++.... .++. +...+. . .+.|++|.+|| .|+...-...++.+.+.-..- .+...+
T Consensus 206 ~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l-~r~W~I 284 (312)
T 3l2o_B 206 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLV 284 (312)
T ss_dssp HHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEE
T ss_pred HHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccC-CCcEEE
Confidence 688999999999999986432 2221 112221 1 58999999997 588655444445444432111 134578
Q ss_pred EEEeccCCCCHHHHHHHHHHHHhhc
Q psy17089 331 NFISAIKLNNINSFMESINHVYDSS 355 (419)
Q Consensus 331 ~~~SA~~g~gv~~l~~~i~~~~~~~ 355 (419)
..|||.+|+|+.+-++++.+.+...
T Consensus 285 q~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 285 QDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp EEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred EecccCCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999876543
No 445
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.24 E-value=2.9e-06 Score=86.07 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=42.9
Q ss_pred eEEEEeCCCCCCCC--cch-HHHHHHHHHHHHHHHhhc-CEEEEEecCCCCC-CHHHHHHHHHHHHcCCcEEEEEEcccC
Q psy17089 231 KYILIDTAGIRRRN--KTF-EVIEKFSVIKTLKSILEA-NVVILLLDAQQNI-SAQDINIANFIYESGRSLIVCVNKWDS 305 (419)
Q Consensus 231 ~~~liDtpG~~~~~--~~~-~~~e~~~~~~~~~~~~~a-d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~iiv~NK~Dl 305 (419)
.+.++|.||+.... ... ...+... .....++... .+++++++.+... +....++++.+...+.+.|+|+||+|+
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 58899999875521 111 1111111 2222344443 5666666655432 233456677776678999999999999
Q ss_pred CCh
Q psy17089 306 IIH 308 (419)
Q Consensus 306 ~~~ 308 (419)
++.
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 854
No 446
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.18 E-value=4.8e-06 Score=71.28 Aligned_cols=94 Identities=16% Similarity=0.075 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCC-HhHHHH---HHHHHh----cCCCEEEEEecc-CCCCCCcchhHH------hc
Q psy17089 71 EMTKQTKQAIIESDIIIFIVDGRQGLV-EQDKLI---TNFLRK----SGQPIVLVINKS-ENINSSISLDFY------EL 135 (419)
Q Consensus 71 ~~~~~~~~~~~~~d~il~v~d~~~~~~-~~~~~~---~~~l~~----~~~p~ilv~NK~-Dl~~~~~~~~~~------~~ 135 (419)
.++..+..|+.++|++|||+|+.+... ..-.++ .+.+.. .+.|+++++||. |+.......+.. ..
T Consensus 114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l 193 (227)
T 3l82_B 114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL 193 (227)
T ss_dssp ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG
T ss_pred HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC
Confidence 567778899999999999999875422 122333 333322 367999999995 776554432221 11
Q ss_pred C-CCCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 136 G-IGNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 136 ~-~~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
. .-.+.++||++|+|+.+-+++|.+.+..
T Consensus 194 ~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 194 NHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 1 1146889999999999999999976654
No 447
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.17 E-value=1.2e-05 Score=73.87 Aligned_cols=141 Identities=22% Similarity=0.285 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh------CCCCceecCCCC----------------C-------CccceE------EEEEEC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLT------NSRDALVANYPG----------------L-------TRDRHY------GEGYIG 48 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~------~~~~~~~~~~~~----------------~-------t~~~~~------~~~~~~ 48 (419)
.|+++|++|+||||++..|. |.+.......+. . ..+... ......
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~ 179 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE 179 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 58899999999999999986 333222221100 0 000000 000114
Q ss_pred CeEEEEEEcCCCCC--cchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCC-EEEEEeccCCCC
Q psy17089 49 KKSFIIIDTGGFEP--EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENIN 125 (419)
Q Consensus 49 ~~~~~liDtpG~~~--~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~~ 125 (419)
+..+.++||||... .. +.+..++.. ...+..+|.+++|+|+..+ .......+.+.. ..| ..+|+||+|...
T Consensus 180 ~~D~ViIDTpg~~~~~~~-~~l~~el~~--i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEE-AALLEEMKN--IYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA 253 (297)
T ss_dssp TCSEEEEECCCSCCTTCH-HHHHHHHHH--HHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT
T ss_pred CCCEEEEeCCCCcccccH-HHHHHHHHH--HHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc
Confidence 56799999999875 22 122222221 1235579999999998743 222333444444 456 788999999764
Q ss_pred CCcc-hhHH-hcCCCCeEEEeeccCCCHHH
Q psy17089 126 SSIS-LDFY-ELGIGNPHIISALYGNGIKN 153 (419)
Q Consensus 126 ~~~~-~~~~-~~~~~~~~~vSa~~~~~v~~ 153 (419)
.... .... ..+. ++..++ .|+++++
T Consensus 254 ~~g~~~~~~~~~~~-pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 KGGGALSAVAATGA-TIKFIG--TGEKIDE 280 (297)
T ss_dssp THHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred chHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence 3332 2222 3333 555555 5666653
No 448
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.16 E-value=1.1e-05 Score=78.05 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=61.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC---------------CCceecCCCCCCccceEEEEEEC-----------CeEEEEEEc
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNS---------------RDALVANYPGLTRDRHYGEGYIG-----------KKSFIIIDT 57 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~liDt 57 (419)
.|.|+|++++|||+|+|+|+|. .....+ ..++|+.+..+...|. +..+.++||
T Consensus 69 vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 4899999999999999999863 111122 2236666777776664 257899999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHh
Q psy17089 58 GGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK 109 (419)
Q Consensus 58 pG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~ 109 (419)
||+.+...+ .. .-...+..++.-++..+|-... .+...+...++.+-+
T Consensus 148 eG~~~~~~~-~~-~d~~ifal~~lLSs~~IyN~~~--~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 148 QGTFDSQST-LR-DSATVFALSTMISSIQVYNLSQ--NVQEDDLQHLQLFTE 195 (447)
T ss_dssp ECCCSSHHH-HH-HHHHHHHHHHHHCSEEEEEESS--SCCHHHHHHHHHHHH
T ss_pred Ccccccccc-hh-hhHHHHHHHHHHhhHHHHhhcc--cccHHHHHHHHHHHH
Confidence 999755421 11 1112223333446766666643 456666555555443
No 449
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.13 E-value=5.2e-06 Score=80.28 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=58.0
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCC---------------ceeeecCCCCccceeeeEeeEEe-----------CeeEEE
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGE---------------NRVITYDTPGTTRDSIKSLFEYN-----------NKKYIL 234 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~l 234 (419)
+-.-|+|+|.+++|||||+|+|++. ..... ...+++.....+.+.+. +..+.+
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f-~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGF-SWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSS-CSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhccccccccccccccccccee-cCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 4467999999999999999999863 11122 22234444444443331 246888
Q ss_pred EeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHH
Q psy17089 235 IDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIY 290 (419)
Q Consensus 235 iDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~ 290 (419)
+||||+.+.... .+ .......-..--+++.|+-. .......++..+..+.
T Consensus 145 lDTeG~~~~~~~---~~-~d~~ifal~~lLSs~~IyN~--~~~i~~~~l~~L~~~~ 194 (447)
T 3q5d_A 145 MDTQGTFDSQST---LR-DSATVFALSTMISSIQVYNL--SQNVQEDDLQHLQLFT 194 (447)
T ss_dssp EEEECCCSSHHH---HH-HHHHHHHHHHHHCSEEEEEE--SSSCCHHHHHHHHHHH
T ss_pred EcCCcccccccc---hh-hhHHHHHHHHHHhhHHHHhh--cccccHHHHHHHHHHH
Confidence 999999766431 11 11111111222366555544 4456677766555443
No 450
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.05 E-value=2.7e-05 Score=75.37 Aligned_cols=120 Identities=19% Similarity=0.190 Sum_probs=68.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHh-------CCceeeecCCCCcc--c------------eeeeE---------------e
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLL-------GENRVITYDTPGTT--R------------DSIKS---------------L 224 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~-------~~~~~~~~~~~~~t--~------------~~~~~---------------~ 224 (419)
++..|+++|.+|+||||++..|. |.....+.-.+... . +.... .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999987 54433322111000 0 00000 0
Q ss_pred eEEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEEcc
Q psy17089 225 FEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKW 303 (419)
Q Consensus 225 ~~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~ 303 (419)
....+..+.|+||||...... ..... ......+..++.+++|+|+..+.. .....+.+.. ..+ .-+|+||+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~--~l~~~---L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~~-~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDE--AMMDE---IKQVHASINPVETLFVVDAMTGQD--AANTAKAFNE-ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCH--HHHHH---HHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHHH-HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccH--HHHHH---HHHHHHhhcCcceeEEeecchhHH--HHHHHHHHhc-cCCCeEEEEecC
Confidence 011356899999999755431 11111 122234557899999999987632 2333333332 344 34699999
Q ss_pred cCCCh
Q psy17089 304 DSIIH 308 (419)
Q Consensus 304 Dl~~~ 308 (419)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 97543
No 451
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.96 E-value=2.1e-05 Score=73.24 Aligned_cols=148 Identities=22% Similarity=0.207 Sum_probs=80.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCc------eeeec-CCCCc-------------cceeeeEe------------e---
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGEN------RVITY-DTPGT-------------TRDSIKSL------------F--- 225 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~------~~~~~-~~~~~-------------t~~~~~~~------------~--- 225 (419)
++--++++|++|+||||+++.|.+.. ....+ +.... ........ +
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 56789999999999999999997431 11111 10000 00000000 0
Q ss_pred EEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccC
Q psy17089 226 EYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDS 305 (419)
Q Consensus 226 ~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl 305 (419)
...+..+.++||+|...... ..+++.. .....-..|-.++++|++.+ .+-...++.+.+.-...++++||.|.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~--~l~~eL~---~i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNR--NLMDEMK---KIARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTT--CHHHHHH---HHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred HhccchhhHHhhccchhHHH--HHHHHHH---HHHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 01245678899999855331 1122221 11222347899999998876 23344555555433445788999997
Q ss_pred CChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHHH
Q psy17089 306 IIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSF 344 (419)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 344 (419)
...... ... +.... +.|+.+++ +|++++++
T Consensus 281 ~a~~G~--~l~-~~~~~----~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 281 DARGGA--ALS-ISYVI----DAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CSCCHH--HHH-HHHHH----TCCEEEEE--CSSSTTCE
T ss_pred ccchhH--HHH-HHHHH----CCCEEEEe--CCCCcccc
Confidence 432211 111 11222 36888888 67776553
No 452
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.95 E-value=2.2e-05 Score=70.64 Aligned_cols=94 Identities=16% Similarity=0.084 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCH-hHHH---HHHHHHh----cCCCEEEEEec-cCCCCCCcchhHH-hcC----
Q psy17089 71 EMTKQTKQAIIESDIIIFIVDGRQGLVE-QDKL---ITNFLRK----SGQPIVLVINK-SENINSSISLDFY-ELG---- 136 (419)
Q Consensus 71 ~~~~~~~~~~~~~d~il~v~d~~~~~~~-~~~~---~~~~l~~----~~~p~ilv~NK-~Dl~~~~~~~~~~-~~~---- 136 (419)
.++.....|+.++|++|||+|+.+.... .-.+ +...+.+ .+.|+++++|| .|+.......+.. .++
T Consensus 199 ~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l 278 (312)
T 3l2o_B 199 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL 278 (312)
T ss_dssp CCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGG
T ss_pred HHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccC
Confidence 4566778899999999999998654321 2222 2233422 47899999997 5886655442221 111
Q ss_pred --CCCeEEEeeccCCCHHHHHHHHHHhcCC
Q psy17089 137 --IGNPHIISALYGNGIKNFLENILTIELP 164 (419)
Q Consensus 137 --~~~~~~vSa~~~~~v~~l~~~i~~~~~~ 164 (419)
.-.+.++||++|+|+.+-++++.+.+..
T Consensus 279 ~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 279 NHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred CCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 1146889999999999999999987754
No 453
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.91 E-value=2.2e-05 Score=75.95 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=65.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHh-------CCCCceecCCC--CCCc------------cceE---------------EEEE
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLT-------NSRDALVANYP--GLTR------------DRHY---------------GEGY 46 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~-------~~~~~~~~~~~--~~t~------------~~~~---------------~~~~ 46 (419)
..|+++|.+||||||++..|. |.+...+..-+ .... +... ....
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~ 180 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHH
Confidence 368899999999999999997 55443322111 1000 0000 0011
Q ss_pred ECCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCC-EEEEEeccCCCC
Q psy17089 47 IGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENIN 125 (419)
Q Consensus 47 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~Dl~~ 125 (419)
..+..+.|+||||..... +.....+. ....+..++.+++|+|+..+... ....+.+.. ..+ .-+|+||+|...
T Consensus 181 ~~~~D~VIIDTpG~l~~~-~~l~~~L~--~~~~~~~p~~vllVvda~~g~~~--~~~~~~f~~-~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 181 LKFYDVLLVDTAGRLHVD-EAMMDEIK--QVHASINPVETLFVVDAMTGQDA--ANTAKAFNE-ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HTTCSEEEEECCCCCTTC-HHHHHHHH--HHHHHSCCSEEEEEEETTBCTTH--HHHHHHHHH-HSCCCCEEEECTTSSS
T ss_pred hCCCCEEEEECCCccccc-HHHHHHHH--HHHHhhcCcceeEEeecchhHHH--HHHHHHHhc-cCCCeEEEEecCCCCc
Confidence 145679999999976432 11222221 11234578999999998754222 223333332 244 346899999653
No 454
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.89 E-value=4.9e-06 Score=76.63 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=57.5
Q ss_pred HHhhcCEEEEEecCCCCCCHHHHHHHHHH---HHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccC
Q psy17089 261 SILEANVVILLLDAQQNISAQDINIANFI---YESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (419)
Q Consensus 261 ~~~~ad~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 337 (419)
.+.++|.+++|+|+..+....+ .+-+++ ...++|.++|+||+||.++....+..+.+.+.+... +.+++.+||++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-g~~v~~~sa~~ 160 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-GYDVYLTSSKD 160 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-TCCEEECCHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 4678999999999997665544 333333 457899999999999987643111112222232222 24889999999
Q ss_pred CCCHHHHHHH
Q psy17089 338 LNNINSFMES 347 (419)
Q Consensus 338 g~gv~~l~~~ 347 (419)
|.|+++|++.
T Consensus 161 ~~g~~~L~~~ 170 (307)
T 1t9h_A 161 QDSLADIIPH 170 (307)
T ss_dssp HTTCTTTGGG
T ss_pred CCCHHHHHhh
Confidence 9999887754
No 455
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.81 E-value=2.5e-05 Score=72.73 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=54.0
Q ss_pred CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCCCc
Q psy17089 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI 128 (419)
Q Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~ 128 (419)
+..+.++||+|..... ....+++.. .. .+-.+|-.++++|+..+. .-...++.+.+.-...++++||.|....-.
T Consensus 211 ~~d~vliDtaG~~~~~-~~l~~eL~~-i~-ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~a~~G 285 (328)
T 3e70_C 211 GIDVVLIDTAGRSETN-RNLMDEMKK-IA-RVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDADARGG 285 (328)
T ss_dssp TCSEEEEEECCSCCTT-TCHHHHHHH-HH-HHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGCSCCH
T ss_pred cchhhHHhhccchhHH-HHHHHHHHH-HH-HHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCccchh
Confidence 3457789999986432 233334332 22 233588999999976542 223334444432344577889999744322
Q ss_pred c-hhH-HhcCCCCeEEEeeccCCCHHH
Q psy17089 129 S-LDF-YELGIGNPHIISALYGNGIKN 153 (419)
Q Consensus 129 ~-~~~-~~~~~~~~~~vSa~~~~~v~~ 153 (419)
. ... ...+. ++..++ .|+++++
T Consensus 286 ~~l~~~~~~~~-pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 286 AALSISYVIDA-PILFVG--VGQGYDD 309 (328)
T ss_dssp HHHHHHHHHTC-CEEEEE--CSSSTTC
T ss_pred HHHHHHHHHCC-CEEEEe--CCCCccc
Confidence 2 222 24454 566666 6666643
No 456
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.72 E-value=0.00015 Score=66.81 Aligned_cols=124 Identities=25% Similarity=0.214 Sum_probs=65.5
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCC------ceeeec-CCC--Cc-----------cceeeeEe------------e---
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGE------NRVITY-DTP--GT-----------TRDSIKSL------------F--- 225 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~------~~~~~~-~~~--~~-----------t~~~~~~~------------~--- 225 (419)
++-.++++|++|+||||+++.|.+. .....+ +.. +. ....+... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999732 111111 000 00 00000000 0
Q ss_pred EEeCeeEEEEeCCCCCCCCcch-HHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHc-CCcEEEEEEcc
Q psy17089 226 EYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES-GRSLIVCVNKW 303 (419)
Q Consensus 226 ~~~~~~~~liDtpG~~~~~~~~-~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~iiv~NK~ 303 (419)
...+..+.++||+|........ ..+.+.+...+.......+.+++++|++.+. .....+..+.+. +. .++++||.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~~-t~iivTh~ 257 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVGL-TGVIVTKL 257 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHCC-SEEEEECT
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcCC-cEEEEECC
Confidence 0123467789999985443110 1122111111111123468889999998763 334444555443 44 56789999
Q ss_pred cCCC
Q psy17089 304 DSII 307 (419)
Q Consensus 304 Dl~~ 307 (419)
|...
T Consensus 258 d~~a 261 (304)
T 1rj9_A 258 DGTA 261 (304)
T ss_dssp TSSC
T ss_pred cccc
Confidence 8653
No 457
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.69 E-value=0.00044 Score=63.65 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=40.0
Q ss_pred eEEEEEEcCCCCCcchhhHHHHHHHH---HHHH-HHhCCEEEEEEeCCCCCCHhHHHHHHHHHh-cCCCEEEEEeccCCC
Q psy17089 50 KSFIIIDTGGFEPEVKKGIMHEMTKQ---TKQA-IIESDIIIFIVDGRQGLVEQDKLITNFLRK-SGQPIVLVINKSENI 124 (419)
Q Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~~~---~~~~-~~~~d~il~v~d~~~~~~~~~~~~~~~l~~-~~~p~ilv~NK~Dl~ 124 (419)
..+.++||+|..... .....++..+ ...+ ....+.+++++|+..+.. ....+..+.+ .+. .++++||.|..
T Consensus 185 ~d~~llDt~G~~~~~-~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivTh~d~~ 260 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTK-HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVTKLDGT 260 (304)
T ss_dssp CSEEEECCCCCCTTC-HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEECTTSS
T ss_pred CCEEEecCCCCCCch-HHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEECCccc
Confidence 456799999986433 2222233222 1112 234677889999875422 2223333333 344 56788999865
Q ss_pred CC
Q psy17089 125 NS 126 (419)
Q Consensus 125 ~~ 126 (419)
..
T Consensus 261 a~ 262 (304)
T 1rj9_A 261 AK 262 (304)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 458
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.66 E-value=0.00036 Score=67.99 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=72.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC------CCceec-CCCCC-------C--ccceEEEE-E------------------EC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNS------RDALVA-NYPGL-------T--RDRHYGEG-Y------------------IG 48 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~------~~~~~~-~~~~~-------t--~~~~~~~~-~------------------~~ 48 (419)
.|+|+|.+|+|||||++.|.+. ...+.. +.... . .......+ + ..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~ 374 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKAR 374 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhc
Confidence 6899999999999999999752 111111 11000 0 00000000 0 13
Q ss_pred CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHH-----hCCEEEEEEeCCCCCCHhHHHHHHHHHh-cCCCEEEEEeccC
Q psy17089 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII-----ESDIIIFIVDGRQGLVEQDKLITNFLRK-SGQPIVLVINKSE 122 (419)
Q Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~-----~~d~il~v~d~~~~~~~~~~~~~~~l~~-~~~p~ilv~NK~D 122 (419)
+..+.++||+|..... ...+.++. .+...++ ..+-+++|+|+..+. .....++.+.+ .+. ..+|+||.|
T Consensus 375 ~~DvVLIDTaGrl~~~-~~lm~EL~-kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~i-tgvIlTKLD 449 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNK-SHLMEELK-KIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGL-TGITLTKLD 449 (503)
T ss_dssp TCSEEEECCCCSCCCH-HHHHHHHH-HHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCC-SEEEEECGG
T ss_pred CCCEEEEeCCCccchh-hhHHHHHH-HHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCC-CEEEEEcCC
Confidence 4568899999986433 22222322 2222222 256789999987542 22233444443 333 456889999
Q ss_pred CCCCCcc-hhHH-hcCCCCeEEEeeccCCCHHH
Q psy17089 123 NINSSIS-LDFY-ELGIGNPHIISALYGNGIKN 153 (419)
Q Consensus 123 l~~~~~~-~~~~-~~~~~~~~~vSa~~~~~v~~ 153 (419)
-...-.. ..+. ..+. ++..+. .|+++++
T Consensus 450 ~takgG~~lsi~~~~~~-PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 450 GTAKGGVIFSVADQFGI-PIRYIG--VGERIED 479 (503)
T ss_dssp GCSCCTHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred CcccccHHHHHHHHHCC-CEEEEe--cCCChhh
Confidence 6433322 2222 3444 444433 5555543
No 459
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.59 E-value=0.00099 Score=64.88 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=65.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCC------ceeeecCCCCcc--------------ceeeeEee---------------
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGE------NRVITYDTPGTT--------------RDSIKSLF--------------- 225 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~------~~~~~~~~~~~t--------------~~~~~~~~--------------- 225 (419)
.+-.++|+|.+|+|||||++.|.+. ............ ...+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 5568999999999999999998742 111111100000 00000000
Q ss_pred EEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh-----hcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEE
Q psy17089 226 EYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL-----EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300 (419)
Q Consensus 226 ~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~-----~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~ 300 (419)
...+..+.|+||+|...... ..++.. ......++ ..+-+++|+|++.+ ......++.+.+.-....+|+
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~--~lm~EL--~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~itgvIl 445 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKS--HLMEEL--KKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLTGITL 445 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHH--HHHHHH--HHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCCSEEEE
T ss_pred HhcCCCEEEEeCCCccchhh--hHHHHH--HHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCCCEEEE
Confidence 01245789999999854431 112221 11112222 25678999999876 333445555554322335789
Q ss_pred EcccCC
Q psy17089 301 NKWDSI 306 (419)
Q Consensus 301 NK~Dl~ 306 (419)
||.|-.
T Consensus 446 TKLD~t 451 (503)
T 2yhs_A 446 TKLDGT 451 (503)
T ss_dssp ECGGGC
T ss_pred EcCCCc
Confidence 999964
No 460
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.56 E-value=5.1e-05 Score=69.96 Aligned_cols=98 Identities=20% Similarity=0.350 Sum_probs=49.8
Q ss_pred CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH-----HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCC
Q psy17089 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI-----IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSEN 123 (419)
Q Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-----~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl 123 (419)
+..+.++||||..... +.+.+++.. ....+ ..++.+++|+|+..+ .......+.+.+.-...-+|+||.|.
T Consensus 186 ~~dvvIiDtpg~~~~~-~~l~~eL~~-l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gvVlTk~D~ 261 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTK-KNLMEELRK-VHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIILTKLDG 261 (306)
T ss_dssp TCSEEEEEECCCCSCH-HHHHHHHHH-HHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred CCCEEEEECCCchhhH-HHHHHHHHH-HHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 4568999999974322 333333322 22222 247889999998732 11112223333222234567899996
Q ss_pred CCCCcc-hhHH-hcCCCCeEEEeeccCCCHHH
Q psy17089 124 INSSIS-LDFY-ELGIGNPHIISALYGNGIKN 153 (419)
Q Consensus 124 ~~~~~~-~~~~-~~~~~~~~~vSa~~~~~v~~ 153 (419)
...-.. .+.. ..+. ++..++ .|+.+++
T Consensus 262 ~~~gG~~l~~~~~~~~-Pi~~i~--~Ge~~~d 290 (306)
T 1vma_A 262 TAKGGITLAIARELGI-PIKFIG--VGEKAED 290 (306)
T ss_dssp CSCTTHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred ccchHHHHHHHHHHCC-CEEEEe--CCCChhh
Confidence 544333 2222 3444 555544 3444443
No 461
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.56 E-value=1.9e-05 Score=67.69 Aligned_cols=55 Identities=31% Similarity=0.388 Sum_probs=39.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC-ceecCCCCCCccceEEEEEECCeEEEEEEcCCC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNSRD-ALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 60 (419)
.|+|+|++|||||||+++|++... .+....+.+|+....+. .+|..+.++|.+.+
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f 76 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEM 76 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHh
Confidence 689999999999999999997543 34455556777665433 56776677766544
No 462
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.51 E-value=0.00062 Score=63.85 Aligned_cols=84 Identities=8% Similarity=0.013 Sum_probs=53.5
Q ss_pred HhhcCEEEEEecCCCCCCHHH-H-HHHHHHHHcCCcEEEEEEcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCC
Q psy17089 262 ILEANVVILLLDAQQNISAQD-I-NIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (419)
Q Consensus 262 ~~~ad~~i~v~d~~~~~~~~~-~-~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 339 (419)
+.++|.+++|.. ..+..... + +++......++|.++|+||+||.++..... .+.+...+... +.+++++||++|.
T Consensus 128 ~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~-~~~~~~~y~~~-G~~v~~~Sa~~~~ 204 (358)
T 2rcn_A 128 AANIDQIVIVSA-ILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDF-VNEQMDIYRNI-GYRVLMVSSHTQD 204 (358)
T ss_dssp EECCCEEEEEEE-STTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHH-HHHHHHHHHTT-TCCEEECBTTTTB
T ss_pred HhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHH-HHHHHHHHHhC-CCcEEEEecCCCc
Confidence 467899987754 44433222 1 233333457899999999999987654211 22222333333 3579999999999
Q ss_pred CHHHHHHHH
Q psy17089 340 NINSFMESI 348 (419)
Q Consensus 340 gv~~l~~~i 348 (419)
|+++|...+
T Consensus 205 gl~~L~~~~ 213 (358)
T 2rcn_A 205 GLKPLEEAL 213 (358)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHHhc
Confidence 999987643
No 463
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.40 E-value=0.00048 Score=66.21 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=42.2
Q ss_pred eCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC
Q psy17089 228 NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII 307 (419)
Q Consensus 228 ~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 307 (419)
.+..+.|+||||..... ...+.+. ........+|.+++|+|+..+ ......++.+.+.-...-+|+||+|...
T Consensus 179 ~~~DvVIIDTaG~l~~d--~~l~~el---~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQID--EPLMGEL---ARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCC--HHHHHHH---HHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCccccc--HHHHHHH---HHhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCCceEEEEeCcCCcc
Confidence 34579999999975442 1111111 111233368999999999865 2223334444432223567899999753
No 464
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.31 E-value=0.00039 Score=64.51 Aligned_cols=74 Identities=16% Similarity=0.335 Sum_probs=39.4
Q ss_pred CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHH-----HhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCC
Q psy17089 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI-----IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSEN 123 (419)
Q Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-----~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl 123 (419)
+..+.|+||||..... +....++.. +...+ ..+|.+++|+|+..+ .......+.+...-...-+|+||+|.
T Consensus 191 ~yD~VIIDTpg~l~~~-~~l~~eL~~-~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNK-TNLMAELEK-MNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSKVADVSGIILTKMDS 266 (320)
T ss_dssp TCSEEEEECCCCGGGH-HHHHHHHHH-HHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTTTSCCCEEEEECGGG
T ss_pred CCCEEEEcCCCccccc-HHHHHHHHH-HHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhhcCCCcEEEEeCCCC
Confidence 5678999999986432 122222221 11112 237899999998743 11111122222211233578999996
Q ss_pred CCC
Q psy17089 124 INS 126 (419)
Q Consensus 124 ~~~ 126 (419)
...
T Consensus 267 ~~~ 269 (320)
T 1zu4_A 267 TSK 269 (320)
T ss_dssp CSC
T ss_pred CCc
Confidence 543
No 465
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.30 E-value=0.00051 Score=59.11 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=46.4
Q ss_pred CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhc-----CCCEEEEEeccCC
Q psy17089 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKS-----GQPIVLVINKSEN 123 (419)
Q Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~-----~~p~ilv~NK~Dl 123 (419)
...+.|+|||+... ......+..+|.+++++...... ..-..+.+.++.. +.++.+|+|++|.
T Consensus 75 ~yD~viiD~~~~~~-----------~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----------VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp TSSEEEEECCSSSS-----------HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCCEEEEECCCCCC-----------HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 35789999998761 12344567799999999887655 5556677777653 3577999999984
Q ss_pred C
Q psy17089 124 I 124 (419)
Q Consensus 124 ~ 124 (419)
.
T Consensus 143 ~ 143 (206)
T 4dzz_A 143 M 143 (206)
T ss_dssp T
T ss_pred C
Confidence 3
No 466
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.30 E-value=0.0018 Score=60.04 Aligned_cols=73 Identities=25% Similarity=0.261 Sum_probs=39.8
Q ss_pred CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH-----hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcc
Q psy17089 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI-----LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKW 303 (419)
Q Consensus 229 ~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~-----~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~ 303 (419)
+..++|+||||..... ...++.. ......+ ..+|.+++|+|++.+ .......+.+.+.-...=+|+||.
T Consensus 191 ~yD~VIIDTpg~l~~~--~~l~~eL--~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNK--TNLMAEL--EKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TCSEEEEECCCCGGGH--HHHHHHH--HHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTTTSCCCEEEEECG
T ss_pred CCCEEEEcCCCccccc--HHHHHHH--HHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhhcCCCcEEEEeCC
Confidence 4689999999984321 0111111 1111111 237899999999854 333333333332222335789999
Q ss_pred cCCC
Q psy17089 304 DSII 307 (419)
Q Consensus 304 Dl~~ 307 (419)
|...
T Consensus 265 d~~~ 268 (320)
T 1zu4_A 265 DSTS 268 (320)
T ss_dssp GGCS
T ss_pred CCCC
Confidence 9743
No 467
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.28 E-value=0.00028 Score=64.94 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=75.1
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCC------ceeeec-CCCCc-------------cceeeeE------------ee---
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGE------NRVITY-DTPGT-------------TRDSIKS------------LF--- 225 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~------~~~~~~-~~~~~-------------t~~~~~~------------~~--- 225 (419)
++-.|+++|.+|+||||++..|.+. ...... +.... ....... .+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 4567999999999999999988632 111111 00000 0000000 00
Q ss_pred EEeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHH-----hhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEE
Q psy17089 226 EYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI-----LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300 (419)
Q Consensus 226 ~~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~-----~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~ 300 (419)
...+..+.++||||..... ...++.. ......+ ..++.+++|+|++.+ .......+.+.+.-...-+|+
T Consensus 183 ~~~~~dvvIiDtpg~~~~~--~~l~~eL--~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gvVl 256 (306)
T 1vma_A 183 LARNKDVVIIDTAGRLHTK--KNLMEEL--RKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIIL 256 (306)
T ss_dssp HHTTCSEEEEEECCCCSCH--HHHHHHH--HHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEE
T ss_pred HhcCCCEEEEECCCchhhH--HHHHHHH--HHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEE
Confidence 1124579999999963221 1112221 1111222 137889999999844 333343444443333345678
Q ss_pred EcccCCChhhHHHHHHHHHHHcCCCCCCcEEEEeccCCCCHHH
Q psy17089 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINS 343 (419)
Q Consensus 301 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 343 (419)
||.|....... . -.+...+ +.|+.+++. |+++++
T Consensus 257 Tk~D~~~~gG~--~-l~~~~~~----~~Pi~~i~~--Ge~~~d 290 (306)
T 1vma_A 257 TKLDGTAKGGI--T-LAIAREL----GIPIKFIGV--GEKAED 290 (306)
T ss_dssp ECGGGCSCTTH--H-HHHHHHH----CCCEEEEEC--SSSGGG
T ss_pred eCCCCccchHH--H-HHHHHHH----CCCEEEEeC--CCChhh
Confidence 99997543221 1 1222222 257777765 334544
No 468
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.19 E-value=0.0014 Score=59.98 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=61.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCC-------ceeeecCCC----------------CccceeeeE-------eeEEeCe
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGE-------NRVITYDTP----------------GTTRDSIKS-------LFEYNNK 230 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~-------~~~~~~~~~----------------~~t~~~~~~-------~~~~~~~ 230 (419)
++-.++++|.+|+||||++..|.+. ....+...+ +........ .....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4568999999999999999988631 111111100 000000000 0011356
Q ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHh--hcCEEEEEecCCCCCCHHHH-HHHHHHHHcCCcEEEEEEcccCCC
Q psy17089 231 KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL--EANVVILLLDAQQNISAQDI-NIANFIYESGRSLIVCVNKWDSII 307 (419)
Q Consensus 231 ~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~--~ad~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~iiv~NK~Dl~~ 307 (419)
.+.|+||||...... ..+.. ....+. ..+.+++|+|++.+ ..+. ++.+.+...+. .-+|+||.|...
T Consensus 184 dlvIiDT~G~~~~~~--~~~~e-----l~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l~~-~giVltk~D~~~ 253 (296)
T 2px0_A 184 DHVFVDTAGRNFKDP--QYIDE-----LKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSSVPV-NQYIFTKIDETT 253 (296)
T ss_dssp SEEEEECCCCCTTSH--HHHHH-----HHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSSSCC-CEEEEECTTTCS
T ss_pred CEEEEeCCCCChhhH--HHHHH-----HHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhcCCC-CEEEEeCCCccc
Confidence 899999999865431 11111 111222 36778999998865 2332 22232222222 346779999754
No 469
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.19 E-value=0.0019 Score=55.41 Aligned_cols=64 Identities=11% Similarity=0.139 Sum_probs=46.3
Q ss_pred CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHc-----CCcEEEEEEcc
Q psy17089 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES-----GRSLIVCVNKW 303 (419)
Q Consensus 229 ~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~NK~ 303 (419)
...++++|||+... ......+..+|.+++++..+... ..-...++.+.+. +.++.+|+|++
T Consensus 75 ~yD~viiD~~~~~~-------------~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-------------VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS-------------HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC-------------HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 35899999998741 12234566799999999998665 5555667777643 46789999999
Q ss_pred cCC
Q psy17089 304 DSI 306 (419)
Q Consensus 304 Dl~ 306 (419)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 964
No 470
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.14 E-value=0.00068 Score=65.16 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=40.9
Q ss_pred CCeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCC
Q psy17089 48 GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN 125 (419)
Q Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 125 (419)
.+..+.|+||||..... .....++.. ...+..++.+++|+|+..+. .....++.+...-....+|+||+|...
T Consensus 179 ~~~DvVIIDTaG~l~~d-~~l~~el~~--i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~~l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQID-EPLMGELAR--LKEVLGPDEVLLVLDAMTGQ--EALSVARAFDEKVGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCC-HHHHHHHHH--HHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHTCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCccccc-HHHHHHHHH--hhhccCCceEEEEEeccchH--HHHHHHHHHHhcCCceEEEEeCcCCcc
Confidence 35578999999976432 122222211 12234689999999987531 112223333322223567899998654
No 471
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.09 E-value=0.0022 Score=66.51 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGE 205 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~ 205 (419)
.+..|.+.|+||+|||.+..++.+.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CCceEEEecCCCCCchHHHHHHHHH
Confidence 4557999999999999999999865
No 472
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.08 E-value=0.0023 Score=58.61 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=41.3
Q ss_pred CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEcccCCC
Q psy17089 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII 307 (419)
Q Consensus 229 ~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 307 (419)
+..+.++||||..... ...+... .. ....-.++.+++|+|+..+ .......+.+...-...-+|+||+|...
T Consensus 180 ~~D~viiDtpp~~~~d--~~~~~~l--~~-~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 180 ARDLILVDTAGRLQID--EPLMGEL--AR-LKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDGDA 251 (295)
T ss_dssp TCCEEEEECCCCSSCC--HHHHHHH--HH-HHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCCEEEEECGGGCS
T ss_pred CCCEEEEeCCCCcccc--HHHHHHH--HH-HhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCCEEEEECCCCCc
Confidence 5689999999875432 1112221 11 1222358889999998753 3333334444332223457899999754
No 473
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.07 E-value=0.0045 Score=58.12 Aligned_cols=122 Identities=20% Similarity=0.190 Sum_probs=64.0
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCC------ceeeec-CCCCc-------------cceeeeEeeE--------------
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGE------NRVITY-DTPGT-------------TRDSIKSLFE-------------- 226 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~------~~~~~~-~~~~~-------------t~~~~~~~~~-------------- 226 (419)
++-.++++|.+|+||||+++.|.+. .....+ +.... ..........
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 5568999999999999999998742 111111 00000 0000000000
Q ss_pred --EeCeeEEEEeCCCCCCCCcchHHHHHHHH---HHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHH-cCCcEEEEE
Q psy17089 227 --YNNKKYILIDTAGIRRRNKTFEVIEKFSV---IKTLKSILEANVVILLLDAQQNISAQDINIANFIYE-SGRSLIVCV 300 (419)
Q Consensus 227 --~~~~~~~liDtpG~~~~~~~~~~~e~~~~---~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~iiv~ 300 (419)
..+....++||+|..... ...+.+... ..........+-+++++|++.+.... .....+.+ .+. .++++
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~--~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~--~~~~~~~~~~g~-t~iii 310 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTN--YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNEVVGI-TGLIL 310 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCC--HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGH--HHHHHHHHHTCC-CEEEE
T ss_pred HHhCCCHHHHHHhcCCChhh--hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHH--HHHHHHHHhcCC-eEEEE
Confidence 013356789999986543 122222221 11111223467789999987664322 22344443 344 46788
Q ss_pred EcccCCC
Q psy17089 301 NKWDSII 307 (419)
Q Consensus 301 NK~Dl~~ 307 (419)
+|.|-..
T Consensus 311 ThlD~~~ 317 (359)
T 2og2_A 311 TKLDGSA 317 (359)
T ss_dssp ESCTTCS
T ss_pred ecCcccc
Confidence 9988653
No 474
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.05 E-value=0.0078 Score=56.50 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTN 24 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~ 24 (419)
.|+++|++|+||||+++.|.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 589999999999999999975
No 475
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.04 E-value=0.00014 Score=62.32 Aligned_cols=57 Identities=33% Similarity=0.475 Sum_probs=37.8
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCce-eeecCCCCccceeeeEeeEEeCeeEEEEeCCC
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENR-VITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG 239 (419)
++.-|+|+|++|+|||||+++|.+... ......+.+|+.+..+. .+|..+.++|.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~ 75 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEE 75 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHH
Confidence 445789999999999999999986532 23344556666554332 4555666665543
No 476
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.01 E-value=0.0037 Score=57.34 Aligned_cols=120 Identities=21% Similarity=0.229 Sum_probs=63.7
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCC------ceeeec-CCCCc-------------cceeeeEeeE--------------
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGE------NRVITY-DTPGT-------------TRDSIKSLFE-------------- 226 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~------~~~~~~-~~~~~-------------t~~~~~~~~~-------------- 226 (419)
++-.++++|++|+||||+++.|.+. .....+ +.... ..........
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 4568999999999999999999742 111111 00000 0000000000
Q ss_pred --EeCeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHH-----HhhcCEEEEEecCCCCCCHHHHHHHHHHHH-cCCcEEE
Q psy17089 227 --YNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS-----ILEANVVILLLDAQQNISAQDINIANFIYE-SGRSLIV 298 (419)
Q Consensus 227 --~~~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~-----~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~ii 298 (419)
..+....++||+|..... ...+++.. +.... ....+-+++++|++.+.... ..++.+.+ .+.. ++
T Consensus 179 ~~~~~~d~~lldt~gl~~~~--~~~~~eLS--kqr~~iaral~~~P~e~lLvLDptsglD~~--~~~~~~~~~~g~t-~i 251 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTN--YSLMEELI--ACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNEVVGIT-GL 251 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCC--HHHHHHHH--HHHHHHHTTSTTCCSEEEEEEEGGGGGGGH--HHHHHHHHHTCCC-EE
T ss_pred HHHcCCcchHHhcCCCCcch--hHHHHHHH--HHHHHHHHhhccCCCeeEEEEeCCCCcCHH--HHHHHHHHhcCCC-EE
Confidence 012356789999986543 12223322 11112 23467778999987764332 22344443 3544 56
Q ss_pred EEEcccCCC
Q psy17089 299 CVNKWDSII 307 (419)
Q Consensus 299 v~NK~Dl~~ 307 (419)
+++|.|...
T Consensus 252 iiThlD~~~ 260 (302)
T 3b9q_A 252 ILTKLDGSA 260 (302)
T ss_dssp EEECCSSCS
T ss_pred EEeCCCCCC
Confidence 789988653
No 477
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.96 E-value=0.00015 Score=71.26 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=61.4
Q ss_pred ceeEEEEEeCCCCchhHHHHHHhCCceeeecCCCCccceeee---EeeEEeC--eeEEEEeCCCCCCCCcchHHHHHH--
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIK---SLFEYNN--KKYILIDTAGIRRRNKTFEVIEKF-- 253 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~~~~~~~~~~~~~~t~~~~~---~~~~~~~--~~~~liDtpG~~~~~~~~~~~e~~-- 253 (419)
.+..|+++|.+|+||||+.++|..... ..+...+... ......+ ....+||+.|.... ...+.+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~-----~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~----r~re~~~~ 108 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN-----FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGL----KIRKQCAL 108 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHH----HHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh-----ccCCCceEEecchhhhhhccCCCcccccCCCCHHHH----HHHHHHHH
Confidence 567899999999999999999874321 0111000000 0000011 12345787775111 011111
Q ss_pred -HHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEEccc
Q psy17089 254 -SVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304 (419)
Q Consensus 254 -~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~D 304 (419)
.......++..+.+.++|+|+++.....-..+.+.+.+.+.+++.+-..++
T Consensus 109 ~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~ 160 (469)
T 1bif_A 109 AALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 160 (469)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECC
Confidence 111123566667888999999987333333455666666766665554333
No 478
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.93 E-value=8e-05 Score=73.20 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=60.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCceecCCCCCCccceEEEEEE-CC-eEEEEEEcCCCCCcc-hhhHHHHHHHHHHHH
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-GK-KSFIIIDTGGFEPEV-KKGIMHEMTKQTKQA 79 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~-~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~ 79 (419)
.+|+++|.+|+||||++++|...-.. ...++...+........ ++ ....+||+.|..... .+............+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~--~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNF--IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc--cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999753110 00000000000000000 11 122356777652100 000000111223456
Q ss_pred HHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccC
Q psy17089 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE 122 (419)
Q Consensus 80 ~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D 122 (419)
+...++.++|+|+.......-..+.+.+++.+.+++.+-..|+
T Consensus 118 l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~ 160 (469)
T 1bif_A 118 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 160 (469)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECC
Confidence 6667888999999875443445566666666666665544443
No 479
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.89 E-value=0.012 Score=52.71 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=42.8
Q ss_pred CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEE-EEEeccCC
Q psy17089 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIV-LVINKSEN 123 (419)
Q Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~i-lv~NK~Dl 123 (419)
...+.|+|||+..... ......+..+|.+++|+.........-....+.+++.+.+++ +|+|+.|.
T Consensus 128 ~yD~ViID~pp~~~~~---------~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDA---------PLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp SCSEEEEECCSSSSSH---------HHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred CCCEEEEECcCCCchH---------HHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 4568899999865221 011112336899999987664333333556666777788876 89999874
No 480
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.86 E-value=0.00075 Score=61.86 Aligned_cols=115 Identities=14% Similarity=0.193 Sum_probs=59.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC-------CCceec-CCCC-CCc------------cceEE---------EEEECCeEEE
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNS-------RDALVA-NYPG-LTR------------DRHYG---------EGYIGKKSFI 53 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~-------~~~~~~-~~~~-~t~------------~~~~~---------~~~~~~~~~~ 53 (419)
.|+++|.+|+||||++..|.+. +..... +... ... ..... .....+..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~dlv 186 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDHV 186 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCCEE
Confidence 6899999999999999988531 111111 1100 000 00000 0011345799
Q ss_pred EEEcCCCCCcchhhHHHHHHHHHHHHHH--hCCEEEEEEeCCCCCCHhHHHHHHHHHhcC--CCEEEEEeccCCCCCC
Q psy17089 54 IIDTGGFEPEVKKGIMHEMTKQTKQAII--ESDIIIFIVDGRQGLVEQDKLITNFLRKSG--QPIVLVINKSENINSS 127 (419)
Q Consensus 54 liDtpG~~~~~~~~~~~~~~~~~~~~~~--~~d~il~v~d~~~~~~~~~~~~~~~l~~~~--~p~ilv~NK~Dl~~~~ 127 (419)
|+||||...... .........+. ..+.+++|+|+.... ..+.++.+... ...-+|+||.|.....
T Consensus 187 IiDT~G~~~~~~-----~~~~el~~~l~~~~~~~~~lVl~at~~~----~~~~~~~~~~~~l~~~giVltk~D~~~~~ 255 (296)
T 2px0_A 187 FVDTAGRNFKDP-----QYIDELKETIPFESSIQSFLVLSATAKY----EDMKHIVKRFSSVPVNQYIFTKIDETTSL 255 (296)
T ss_dssp EEECCCCCTTSH-----HHHHHHHHHSCCCTTEEEEEEEETTBCH----HHHHHHTTTTSSSCCCEEEEECTTTCSCC
T ss_pred EEeCCCCChhhH-----HHHHHHHHHHhhcCCCeEEEEEECCCCH----HHHHHHHHHHhcCCCCEEEEeCCCcccch
Confidence 999999874331 11111222222 356789999887531 12223222211 1235667999976543
No 481
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.77 E-value=0.0002 Score=60.81 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=28.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCC-ceecCCCCCCccceE
Q psy17089 5 LVLVGRPNVGKSTLFNRLTNSRD-ALVANYPGLTRDRHY 42 (419)
Q Consensus 5 i~ivG~~~vGKSsl~n~l~~~~~-~~~~~~~~~t~~~~~ 42 (419)
|+|+|++|||||||+++|+.... .+....+.|||....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~ 42 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRA 42 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCC
Confidence 89999999999999999986532 234445567775543
No 482
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.66 E-value=0.0048 Score=53.32 Aligned_cols=66 Identities=6% Similarity=-0.005 Sum_probs=44.9
Q ss_pred CeeEEEEeCCCC-CCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHH-cCCcEEEEEEcccCC
Q psy17089 229 NKKYILIDTAGI-RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE-SGRSLIVCVNKWDSI 306 (419)
Q Consensus 229 ~~~~~liDtpG~-~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~iiv~NK~Dl~ 306 (419)
...++++|||+. .... ....+..+|.+|+++..+...-..-.+.++.+.+ .+.++.+|+|++|..
T Consensus 67 ~yD~viiD~p~~~~~~~-------------~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDED-------------LEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSSH-------------HHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcHH-------------HHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 357999999987 3321 2245677999999998874322222345666666 367899999999975
Q ss_pred C
Q psy17089 307 I 307 (419)
Q Consensus 307 ~ 307 (419)
.
T Consensus 134 ~ 134 (209)
T 3cwq_A 134 P 134 (209)
T ss_dssp T
T ss_pred c
Confidence 4
No 483
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.66 E-value=0.0019 Score=55.82 Aligned_cols=42 Identities=31% Similarity=0.353 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeCCCCchhHHHHHHhCC
Q psy17089 151 IKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGE 205 (419)
Q Consensus 151 v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~~~GKSslin~l~~~ 205 (419)
.+++.+.|.+.+.+. ..++..|+|+|++|+|||||++.|.+.
T Consensus 4 ~~~~~~~~~~~~~~~-------------~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 4 LAALCQGVLERLDPR-------------QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHHHHSCTT-------------CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346677777655532 125578999999999999999999875
No 484
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.66 E-value=0.0029 Score=57.91 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=39.8
Q ss_pred CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Q psy17089 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126 (419)
Q Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~Dl~~~ 126 (419)
+..+.|+||||..... .....++... .. ...++.+++|+|+... .......+.+...-...-+|+||+|....
T Consensus 180 ~~D~viiDtpp~~~~d-~~~~~~l~~~-~~-~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~givlnk~d~~~~ 252 (295)
T 1ls1_A 180 ARDLILVDTAGRLQID-EPLMGELARL-KE-VLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDGDAR 252 (295)
T ss_dssp TCCEEEEECCCCSSCC-HHHHHHHHHH-HH-HHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCCEEEEECGGGCSS
T ss_pred CCCEEEEeCCCCcccc-HHHHHHHHHH-hh-hcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCCEEEEECCCCCcc
Confidence 4578999999876432 1122222211 11 2358889999997642 22222223333222234578999997543
No 485
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.60 E-value=0.00046 Score=57.74 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy17089 1 MKPVLVLVGRPNVGKSTLFNRLTNS 25 (419)
Q Consensus 1 ~~~~i~ivG~~~vGKSsl~n~l~~~ 25 (419)
|++.++|+|++|+|||||++.|.+.
T Consensus 1 m~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999999999874
No 486
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.59 E-value=0.0011 Score=55.53 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy17089 1 MKPVLVLVGRPNVGKSTLFNRLTNS 25 (419)
Q Consensus 1 ~~~~i~ivG~~~vGKSsl~n~l~~~ 25 (419)
|++.++|+|.+|+|||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 6789999999999999999999863
No 487
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.59 E-value=0.0012 Score=55.73 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNS 25 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~ 25 (419)
..++|+|++|+|||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 488
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.52 E-value=0.029 Score=53.94 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=53.6
Q ss_pred ceeEEEEEeCCCCchhHHHHHHh-------C----------CceeeecC-CCCccceeeeE--eeEE---eC--eeEEEE
Q psy17089 181 EYIKVAIVGKPNVGKSTLINSLL-------G----------ENRVITYD-TPGTTRDSIKS--LFEY---NN--KKYILI 235 (419)
Q Consensus 181 ~~~~i~l~G~~~~GKSslin~l~-------~----------~~~~~~~~-~~~~t~~~~~~--~~~~---~~--~~~~li 235 (419)
+-.-|+|+|..++|||+|+|.|+ + ...+.+++ ...+|...-.. ++.. ++ ..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 34568899999999999999664 1 11222221 11123322111 1111 22 358889
Q ss_pred eCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHH
Q psy17089 236 DTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIY 290 (419)
Q Consensus 236 DtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~ 290 (419)
||.|..+...... .......-.+--++++||-.. ..+..++++.+..+.
T Consensus 146 DTEG~~d~~~~~~----~d~~ifaLa~LLSS~~IyN~~--~~i~~~~L~~L~~~t 194 (457)
T 4ido_A 146 DTQGTFDSQSTLR----DSATVFALSTMISSIQVYNLS--QNVQEDDLQHLQLFT 194 (457)
T ss_dssp EECCBTCTTCCHH----HHHHHHHHHHHHCSEEEEEEE--SSCCHHHHHHHHHHH
T ss_pred eccCCCCcccCcc----ccHHHHHHHHHHhhheeeccc--ccCCHHHHHHHHHHH
Confidence 9999977654321 111111112223666555544 345567766555443
No 489
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.47 E-value=0.0046 Score=53.47 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=45.2
Q ss_pred CeEEEEEEcCCC-CCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHh-cCCCEEEEEeccCCCC
Q psy17089 49 KKSFIIIDTGGF-EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK-SGQPIVLVINKSENIN 125 (419)
Q Consensus 49 ~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~-~~~p~ilv~NK~Dl~~ 125 (419)
...+.++|||+. ... .....+..+|.+++++.........-..+.+.++. .+.++.+|+|++|...
T Consensus 67 ~yD~viiD~p~~~~~~-----------~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-----------DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS-----------HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH-----------HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 356899999997 421 22345678999999998664222333555666666 3678999999998654
No 490
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.35 E-value=0.0017 Score=54.69 Aligned_cols=22 Identities=32% Similarity=0.762 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTNS 25 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~~ 25 (419)
+++|+|++|+|||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 491
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.32 E-value=0.00076 Score=57.21 Aligned_cols=49 Identities=33% Similarity=0.521 Sum_probs=30.6
Q ss_pred EEEEeCCCCchhHHHHHHhCCce-eeecCCCCccceeeeEeeEEeCeeEEEE
Q psy17089 185 VAIVGKPNVGKSTLINSLLGENR-VITYDTPGTTRDSIKSLFEYNNKKYILI 235 (419)
Q Consensus 185 i~l~G~~~~GKSslin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~li 235 (419)
|+|+|++|+|||||+++|+.... ......+.||+.+..+ +.+|..+.++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~g--E~~G~dY~Fv 53 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG--EVNGKDYNFV 53 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTT--CCBTTTBEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCC--CcCCceeEee
Confidence 78999999999999999985421 1222445566654332 2344444444
No 492
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.30 E-value=0.0018 Score=53.95 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Q psy17089 1 MKPVLVLVGRPNVGKSTLFNRLTNS 25 (419)
Q Consensus 1 ~~~~i~ivG~~~vGKSsl~n~l~~~ 25 (419)
|...|+|+|.+|+||||+++.|.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999864
No 493
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.30 E-value=0.0023 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Q psy17089 1 MKPVLVLVGRPNVGKSTLFNRLTN 24 (419)
Q Consensus 1 ~~~~i~ivG~~~vGKSsl~n~l~~ 24 (419)
|...|+|+|.+|+||||+++.|..
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 666799999999999999999985
No 494
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.29 E-value=0.033 Score=53.53 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=53.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC-----------------CCCceecCCCCCCccceEEEEEE---------CC--eEEEEE
Q psy17089 4 VLVLVGRPNVGKSTLFNRLTN-----------------SRDALVANYPGLTRDRHYGEGYI---------GK--KSFIII 55 (419)
Q Consensus 4 ~i~ivG~~~vGKSsl~n~l~~-----------------~~~~~~~~~~~~t~~~~~~~~~~---------~~--~~~~li 55 (419)
-|.|+|..++|||+|+|.|++ ..++.+. ++...|..+..-| +| ..+.++
T Consensus 69 vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~---~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR---GGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCC---CSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred EEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeC---CCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 477999999999999996641 1122111 1112223333333 22 468899
Q ss_pred EcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHH
Q psy17089 56 DTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLR 108 (419)
Q Consensus 56 DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~ 108 (419)
||.|+.+.... . +.-...+..++--++.+||-.... +...+...+.++.
T Consensus 146 DTEG~~d~~~~-~-~~d~~ifaLa~LLSS~~IyN~~~~--i~~~~L~~L~~~t 194 (457)
T 4ido_A 146 DTQGTFDSQST-L-RDSATVFALSTMISSIQVYNLSQN--VQEDDLQHLQLFT 194 (457)
T ss_dssp EECCBTCTTCC-H-HHHHHHHHHHHHHCSEEEEEEESS--CCHHHHHHHHHHH
T ss_pred eccCCCCcccC-c-cccHHHHHHHHHHhhheeeccccc--CCHHHHHHHHHHH
Confidence 99998765421 1 111122333444567777766543 4555544444443
No 495
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.29 E-value=0.0066 Score=55.79 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=39.9
Q ss_pred CeEEEEEEcCCCCCcchhhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHhHHHHHHHHHh----cCCCEE-EEEeccCC
Q psy17089 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK----SGQPIV-LVINKSEN 123 (419)
Q Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~l~~----~~~p~i-lv~NK~Dl 123 (419)
+..+.|+|||+..... .....+..+|.+++|++........-..+.+.++. .+.+++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~----------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG----------GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG----------GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH----------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 3568899998865321 11224678999999997653222222455666654 344544 89999983
No 496
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.28 E-value=0.0017 Score=55.69 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Q psy17089 3 PVLVLVGRPNVGKSTLFNRLTNS 25 (419)
Q Consensus 3 ~~i~ivG~~~vGKSsl~n~l~~~ 25 (419)
..++|+|++|+|||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999874
No 497
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.27 E-value=0.0027 Score=58.22 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=57.4
Q ss_pred CCCEEEEEeccCCCCCCcchhHHhcCCCCeEEEeeccCCCHHHHHHHHHHhcCCcchhccccccccccccceeEEEEEeC
Q psy17089 111 GQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGK 190 (419)
Q Consensus 111 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~vSa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~ 190 (419)
..|++ |++|.|.....-.......+. +++.+++.+...+..+..++...+.+....+ -.-..-...-|+++|.
T Consensus 80 ~~P~I-Iltrg~~~peelie~A~~~~I-PVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H-----~~~v~~~g~~vl~~G~ 152 (314)
T 1ko7_A 80 ETPAI-IVTRDLEPPEELIEAAKEHET-PLITSKIATTQLMSRLTTFLEHELARTTSLH-----GVLVDVYGVGVLITGD 152 (314)
T ss_dssp TCCCE-EECTTCCCCHHHHHHHHHTTC-CEEECCSCHHHHHHHHHHHHHHHTCEEEEEE-----SEEEEETTEEEEEEES
T ss_pred CCCEE-EEeCCCCCCHHHHHHHHHCCC-eEEEECCchhHHHHHHHHHHHHhhccceeee-----EEEEEECCEEEEEEeC
Confidence 55654 568887763222222224455 7788888888888888888877655432211 0001124467999999
Q ss_pred CCCchhHHHHHHhCCc
Q psy17089 191 PNVGKSTLINSLLGEN 206 (419)
Q Consensus 191 ~~~GKSslin~l~~~~ 206 (419)
+|+||||+...|....
T Consensus 153 sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 153 SGIGKSETALELIKRG 168 (314)
T ss_dssp TTSSHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhcC
Confidence 9999999999998654
No 498
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.27 E-value=0.0018 Score=54.61 Aligned_cols=23 Identities=39% Similarity=0.749 Sum_probs=20.8
Q ss_pred EEEEEeCCCCchhHHHHHHhCCc
Q psy17089 184 KVAIVGKPNVGKSTLINSLLGEN 206 (419)
Q Consensus 184 ~i~l~G~~~~GKSslin~l~~~~ 206 (419)
+++++|++|+|||||++.+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998753
No 499
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.21 E-value=0.0027 Score=54.67 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Q psy17089 1 MKPVLVLVGRPNVGKSTLFNRLTN 24 (419)
Q Consensus 1 ~~~~i~ivG~~~vGKSsl~n~l~~ 24 (419)
|+..|+|+|.+|+||||+++.|.+
T Consensus 1 m~~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 667899999999999999999976
No 500
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.19 E-value=0.0075 Score=53.35 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=41.1
Q ss_pred CeeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhcCEEEEEecCCCCCCHHHHHHHHHHHHcCC-cEEEEEEccc
Q psy17089 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR-SLIVCVNKWD 304 (419)
Q Consensus 229 ~~~~~liDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~iiv~NK~D 304 (419)
...++++|||+..... +...+..+|.++++++.+...-..-.++.+.+.+.+. .+.+|+|+.+
T Consensus 131 ~yD~viiD~pp~~~~~-------------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEHL-------------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTTC-------------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccHH-------------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 4579999998864332 1245677999999998864211112234455555564 5789999998
Done!