RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17089
(419 letters)
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 540 bits (1394), Expect = 0.0
Identities = 147/421 (34%), Positives = 256/421 (60%), Gaps = 12/421 (2%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
KPV+ +VGRPNVGKST+FNR+ R ++V + PG+TRDR Y F +IDTGG +
Sbjct: 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID 62
Query: 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS 121
+ + ++ +Q + A+ E+D+IIF+V+GR+G+ D+ + L ++ +P+VL +NK
Sbjct: 63 IG-DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKL 121
Query: 122 ENINSSISL-DFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSI 180
+N ++ DFY LG G P+ IS +G G+ + L+ + + FK T +
Sbjct: 122 DNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVA-------EHFKNIPETKYNE- 173
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
E I+ ++G+PNVGKS+L+N++LGE RVI + GTTRD++ + F YN ++++++DTAG+
Sbjct: 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 233
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
R++ K +E EK+SV++ LK+I + VV ++LD ++ I QD IA + +E+G+++++ V
Sbjct: 234 RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVV 293
Query: 301 NKWDSIIHNQRKI--IKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIH 358
NKWD++ ++ + + NI+ FL +A F+SA+ I++ M +I ++ +
Sbjct: 294 NKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLR 353
Query: 359 LSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYIGNDYKRYL 418
+ T+ + ++ A+ +P R K+ YA Q PP V+ N + + Y+R+L
Sbjct: 354 VQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFL 413
Query: 419 E 419
E
Sbjct: 414 E 414
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 533 bits (1376), Expect = 0.0
Identities = 140/423 (33%), Positives = 230/423 (54%), Gaps = 14/423 (3%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEP 62
+++VGRPNVGKSTLFN+L + A+V + G+TRD K+F ++DT G
Sbjct: 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61
Query: 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE 122
+ I +M + T I E+D+++F+VDG++G+ ++D+ + +FLRKS +LV NK+E
Sbjct: 62 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 121
Query: 123 NINS---SISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHS 179
N+ + + Y LG G P +SA + + LE I+ +L K +
Sbjct: 122 NLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIK-KLEEK---GLDLESKPEI 177
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
+ IKVAIVG+PNVGKSTL N++L + R + PGTTRD + + +KY+ +DTAG
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 237
Query: 240 IRRRNKTF-EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIV 298
+RR+++ +EK+S + + SI +A+VV+++LDA Q I+ QD +A + GR+ +V
Sbjct: 238 LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVV 297
Query: 299 CVNKWDSII--HNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSI 356
NKWD ++ + ++KL F+ ++ F SA K NI+ ++++N Y S
Sbjct: 298 VFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT 357
Query: 357 IHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYIGNDYKR 416
+ +S I AL + R K+ + Q PP + N ++ + N K
Sbjct: 358 TKVPSSAINSALQKVLAFTNLPR----GLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKI 413
Query: 417 YLE 419
+L
Sbjct: 414 FLR 416
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 226 bits (579), Expect = 1e-73
Identities = 58/163 (35%), Positives = 95/163 (58%), Gaps = 4/163 (2%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEP 62
+V+VGRPNVGKS+LFNRL R A+VA+ PG+TRD G + F+++DTGG
Sbjct: 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61
Query: 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE 122
++ ++ +A+ ++++++F VDGR L + D + +LR+ G+P++LV K +
Sbjct: 62 G--DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVD 119
Query: 123 NINSSISL-DFYELGIGNPHIISALYGNGIKNFLENILTIELP 164
+ + L Y LG G+P S+ + G++ LE I LP
Sbjct: 120 DPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWE-RLP 161
Score = 118 bits (298), Expect = 4e-32
Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
KV IVG+PNVGKS+L N LL + + D PG TRD + + E + +++L+DT G+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL--- 59
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKW 303
+ + EK K +++ +A VV+ +D + ++ D +A ++ G+ +I+ K
Sbjct: 60 -WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKV 118
Query: 304 DSI 306
D
Sbjct: 119 DDP 121
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 135 bits (343), Expect = 2e-38
Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 31/185 (16%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF-- 60
++ GR NVGKSTL RLT + PG+TR E K+ IID GF
Sbjct: 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEW----KNHKIIDMPGFGF 56
Query: 61 ----EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGR-----------QGLVEQDKLITN 105
EV++ I E+ + D+ + +VDG+ +G + D
Sbjct: 57 MMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQ 116
Query: 106 FLRKSGQPIVLVINKSENI-NSSISLDFYELGIGNPHI--------ISALYGNGIKNFLE 156
FLR+ P ++ +NK + I N ++F P ISA +G+ I+
Sbjct: 117 FLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKN 176
Query: 157 NILTI 161
I +
Sbjct: 177 RIFEV 181
Score = 105 bits (265), Expect = 4e-27
Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 21/181 (11%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI--- 240
+ G+ NVGKSTLI L G+ +V PG TR I E K + +ID G
Sbjct: 3 TIIFAGRSNVGKSTLIYRLTGK-KVRRGKRPGVTRKII----EIEWKNHKIIDMPGFGFM 57
Query: 241 -RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA-----------QQNISAQDINIANF 288
+ E I+ V + +V +L++D ++ D+ F
Sbjct: 58 MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117
Query: 289 IYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF-LSFAMFNFISAIKLNNINSFMES 347
+ E IV VNK D I + Q I K ++ +F ISA +NI
Sbjct: 118 LRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNR 177
Query: 348 I 348
I
Sbjct: 178 I 178
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 134 bits (339), Expect = 5e-35
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 10/185 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ IVGKPNVGKSTL+N LL E+R I D PGTTRD I + ++DTAG+
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV-- 301
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
R++T +++E+ + +TL+ I +A++V+ +LDA + +D I I + +V +NK
Sbjct: 302 RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINK 359
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTS 362
D + + IKN + + + ISA+K + ESI S S
Sbjct: 360 VDVVEKINEEEIKNKLGTDRHMV------KISALKGEGLEKLEESIYRETQEIFERGSDS 413
Query: 363 RITRA 367
IT
Sbjct: 414 LITNL 418
Score = 99.2 bits (248), Expect = 8e-23
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY--IGKKSFIIIDTGGFEPE 63
V+VG+PNVGKSTL NRL N A+V + PG TRD I F I+DT G E
Sbjct: 247 VIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRD--VISEEIVIRGILFRIVDTAGVRSE 304
Query: 64 V-----KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVI 118
+ GI ++T Q I ++DI++F++D L E+D+ I ++ + ++VI
Sbjct: 305 TNDLVERLGI-----ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIK--NKRYLVVI 357
Query: 119 NKSENINSSISLDFYELGIGNPHI--ISALYGNGIKNFLENILTI 161
NK + + + + H+ ISAL G G++ E+I
Sbjct: 358 NKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRE 402
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 128 bits (323), Expect = 3e-33
Identities = 46/251 (18%), Positives = 96/251 (38%), Gaps = 25/251 (9%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGG 59
+ +V+ GR NVGKS+ N L ++V++Y G T D Y + ++DT G
Sbjct: 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPG 92
Query: 60 FEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
+ + + ++ ++ +D I + D E D + N ++ P V+V+N
Sbjct: 93 LDDVGE--LGRLRVEKARRVFYRADCGILVTDSAPTPYEDD--VVNLFKEMEIPFVVVVN 148
Query: 120 KSENINSSISL--DFYELGIGNPHI-ISALYGNGIKNFLENILTIELPYKKFFKKKEFTN 176
K + + YE + +SAL G + + I + +E
Sbjct: 149 KIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTIS------EILPGDEEIPY 202
Query: 177 IHSI----EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY 232
+ + + + + + K LI + R R++I +L +
Sbjct: 203 LGDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAIR------EALDREAI-ALVVKERELR 255
Query: 233 ILIDTAGIRRR 243
+++ G++ +
Sbjct: 256 YVMENIGMKPK 266
Score = 115 bits (291), Expect = 7e-29
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK-YILIDTAGIRRR 243
+ + G+ NVGKS+ +N+L+G+N I D GTT D + E + L+DT G+
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKW 303
+ + + V K + A+ IL+ D+ D + N E +V VNK
Sbjct: 97 GE----LGRLRVEKARRVFYRADCGILVTDSAPTPYEDD--VVNLFKEMEIPFVVVVNKI 150
Query: 304 DSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D ++ + + +K + + A +SA++ + ++I
Sbjct: 151 D-VLGEKAEELKGLYESRY----EAKVLLVSALQKKGFDDIGKTI 190
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 125 bits (317), Expect = 6e-32
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 12/188 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+ I GKPN GKSTL+N+LLG+ R I PGTTRD I+ F ++ + L DTAG+R
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLR- 292
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE--SGRSLIVCV 300
+ E IE + ++ + EA++++ LLD ++ + +
Sbjct: 293 --EAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVA 350
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI-NHVYDSSIIHL 359
NK D + I + ISA+ + I++ + + + V + +H
Sbjct: 351 NKLDRAANADALIRAIADGTGTEVI------GISALNGDGIDTLKQHMGDLVKNLDKLHE 404
Query: 360 STSRITRA 367
++ +T
Sbjct: 405 ASVLVTSL 412
Score = 98.0 bits (245), Expect = 2e-22
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY--IGKKSFIIIDTGGF--- 60
V+ G+PN GKSTL N L A+V++ PG TRD Y E K F + DT G
Sbjct: 237 VIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRD--YIEECFIHDKTMFRLTDTAGLREA 294
Query: 61 EPEV-KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK--SGQPIVLV 117
E+ +GI ++++ + E+D+I++++D ++ + L+ + V
Sbjct: 295 GEEIEHEGI-----RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTV 349
Query: 118 INKSENINSSISLDFYELGIGNPHI--ISALYGNGIKNFLENILTI 161
NK + ++ +L + ISAL G+GI +++ +
Sbjct: 350 ANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDL 395
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 124 bits (315), Expect = 9e-32
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+KVAIVG+PNVGKS+L+N+ +R I D PGTTRD ++S ++DTAGIR
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR- 283
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+T + +EK V ++ ++ A++V+L +DA + D I + R LI+ +NK
Sbjct: 284 --ETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV--KHRPLILVMNK 339
Query: 303 WD 304
D
Sbjct: 340 ID 341
Score = 100 bits (252), Expect = 3e-23
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 16/163 (9%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY--IGKKSFIIIDTGGF--- 60
+VGRPNVGKS+L N + S A+V + PG TRD E +G ++DT G
Sbjct: 228 AIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRD--VVESQLVVGGIPVQVLDTAGIRET 285
Query: 61 EPEV-KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
+V K G+ ++++QA +D+++ +D G D+ I ++ +P++LV+N
Sbjct: 286 SDQVEKIGV-----ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMN 338
Query: 120 KSENINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENILTI 161
K + + + + +A GI + IL I
Sbjct: 339 KIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEI 381
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 116 bits (292), Expect = 5e-31
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+KV I G+PN GKS+L+N+L G I D GTTRD ++ + +IDTAG+R
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR- 63
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE---SGRSLIVC 299
+ + +E+ + + + I +A+ V+ ++D + I + + V
Sbjct: 64 --EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVV 121
Query: 300 VNKWD 304
NK D
Sbjct: 122 RNKAD 126
Score = 95.3 bits (238), Expect = 2e-23
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 16/162 (9%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF---EP 62
V+ GRPN GKS+L N L A+V + G TRD +I IIDT G
Sbjct: 8 VIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD 67
Query: 63 EV-KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK---SGQPIVLVI 118
EV + GI ++ Q I ++D ++F+VDG I + PI +V
Sbjct: 68 EVERIGI-----ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR 122
Query: 119 NKSENINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENIL 159
NK++ ++ + G+ I +SA G G+ ++
Sbjct: 123 NKADITGETLGMSEVN---GHALIRLSARTGEGVDVLRNHLK 161
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 109 bits (275), Expect = 7e-28
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 8/137 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+ V ++GK VGKS+ +NSL+GE V + +IDT G+
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQ-QNISAQDINIAN-----FIYESGRSL 296
+ +IK +V++ + + D + F E
Sbjct: 97 AGYVNHQALE--LIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKT 154
Query: 297 IVCVNKWDSIIHNQRKI 313
++ + ++
Sbjct: 155 LLVLTHAQFSPPDELSY 171
Score = 67.2 bits (164), Expect = 7e-13
Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 13/163 (7%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEP 62
++++G+ VGKS+ N L + V+ + +G + IIDT G
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96
Query: 63 EVKKGIMHEMTKQTKQAIIES--DIIIFIVD-GRQGLVEQDKLITN-----FLRKSGQPI 114
+ H+ + K ++ D+++++ + E DK + F ++
Sbjct: 97 --AGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKT 154
Query: 115 VLVINKSENI-NSSISLDFYELGIGNP--HIISALYGNGIKNF 154
+LV+ ++ +S + + + I A + F
Sbjct: 155 LLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEF 197
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 104 bits (261), Expect = 4e-25
Identities = 53/269 (19%), Positives = 96/269 (35%), Gaps = 41/269 (15%)
Query: 74 KQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS---------ENI 124
+ +++ IVD + F+ ++LV NK+ + +
Sbjct: 61 RILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVG--NNKVLLVGNKADLIPKSVKHDKV 118
Query: 125 NSSISLDFYELGIGNPHI--ISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEY 182
+ +LG+ + ISA G GI + I + + K
Sbjct: 119 KHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAI-------EYYRGGK---------- 161
Query: 183 IKVAIVGKPNVGKSTLINSLLG------ENRVITYDTPGTTRDSIKSLFEYNNKKYILID 236
V +VG NVGKST IN ++ EN + T PGTT D I + + L D
Sbjct: 162 -DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS---LYD 217
Query: 237 TAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSL 296
T GI ++ + K S +K + E ++ L+ +Q + + +++ R+
Sbjct: 218 TPGIINHHQMAHYVGKQS-LKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAF 276
Query: 297 IVCVNKWDSIIHNQRKIIKNNIKKKLNFL 325
+ +I + + K L
Sbjct: 277 TCHFSNRLTIHRTKLEKADELYKNHAGDL 305
Score = 46.9 bits (111), Expect = 6e-06
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 17/145 (11%)
Query: 7 LVGRPNVGKSTLFNRLTNS------RDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGG 59
+VG NVGKST NR+ +++PG T D I + + DT G
Sbjct: 165 VVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI----DIPLDEESSLYDTPG 220
Query: 60 FEPEVKKGIMHEMTKQTKQAIIESDI--IIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117
+ + + K +I ++F ++ Q L +++ +
Sbjct: 221 IINH-HQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCH 279
Query: 118 INKSENI---NSSISLDFYELGIGN 139
+ I + + Y+ G+
Sbjct: 280 FSNRLTIHRTKLEKADELYKNHAGD 304
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 94.8 bits (237), Expect = 4e-22
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 5/164 (3%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+AIVG+PNVGKSTL+N LLG+ IT TTR I + + I +DT G+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
K I + SI + +VI +++ + + D + N + E +I+ VNK D
Sbjct: 71 KR--AINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVD 127
Query: 305 SIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
++ ++ + +++ + ++F ISA N+++ +
Sbjct: 128 NV--QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169
Score = 90.6 bits (226), Expect = 1e-20
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66
+VGRPNVGKSTL N+L + ++ + TR R G G I +DT G E K+
Sbjct: 13 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 72
Query: 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126
I M K +I + +++IF+V+G + D+++ N LR+ P++L +NK +N+
Sbjct: 73 AINRLMNKAASSSIGDVELVIFVVEGTRWT-PDDEMVLNKLREGKAPVILAVNKVDNVQE 131
Query: 127 SISL----DFYELGIGNPHI--ISALYGNGIKNFLENIL 159
L F + I ISA G + +
Sbjct: 132 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 94.1 bits (235), Expect = 8e-22
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK-YILIDTAGIRRR 243
VAIVGKPNVGKSTL+N+LLG I GTTR + + N+ I +DT GI
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI-YE 71
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIA-NFIYESGRSLIVCVNK 302
K +V+ V +S+ EA+V++ ++DA + +D I NFI + +IV +NK
Sbjct: 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 131
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D I + ++ + ISA+K N++ +++I
Sbjct: 132 ID-KIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTI 176
Score = 90.2 bits (225), Expect = 2e-20
Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 18/167 (10%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDR-----HYGEGYIGKKSFIIIDT-GGF 60
+VG+PNVGKSTL N L ++ ++++ G TR R + I +DT G +
Sbjct: 15 IVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEA----QIIFLDTPGIY 70
Query: 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLI-TNFLRKSGQPIVLVIN 119
EP+ + H M + KQ++ E+D+I+F++D +G +D+ I NF++ +P+++VIN
Sbjct: 71 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVIN 130
Query: 120 KSENINSSISL-----DFYELGIGNPHI--ISALYGNGIKNFLENIL 159
K + I + ++ + ++ I ISAL G + ++ IL
Sbjct: 131 KIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTIL 177
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 93.3 bits (233), Expect = 1e-21
Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 12/167 (7%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI-RRR 243
VAIVGKPNVGKSTL+N+LLG P TTR ++ + ++ + +DT G+ +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFI--YESGRSLIVCVN 301
+ E +++ +++ + N V+ ++D + + +D +A + +++ N
Sbjct: 70 DALGEFMDQEV----YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 125
Query: 302 KWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
K D+ + + L M +SA+ + +
Sbjct: 126 KLDAA--KYPEEAMKAYHELLPEAEPRM---LSALDERQVAELKADL 167
Score = 88.3 bits (220), Expect = 7e-20
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDR-----HYGEGYIGKKSFIIIDT-GGF 60
+VG+PNVGKSTL N L + A ++ P TR R G I + +DT G
Sbjct: 12 IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQI-----VFVDTPGLH 66
Query: 61 EPEVKKGIMHE-MTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK--SGQPIVLV 117
+P + E M ++ +A+ + + ++++VD R +D+L+ L+ PI+LV
Sbjct: 67 KP---MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV 123
Query: 118 INKSENINS-SISLDFYELGIGNPHI--ISALYGNGIKNFLENIL 159
NK + ++ Y + +SAL + ++L
Sbjct: 124 GNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLL 168
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 89.6 bits (222), Expect = 2e-20
Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 11/179 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+ + ++GK VGKS+ +NS++GE V + +IDT G+
Sbjct: 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 99
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-ISAQDINIA-----NFIYESGRSL 296
++ +IK+ +V++ + + D +A +F
Sbjct: 100 GGYINDMALN--IIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKA 157
Query: 297 IVCVNKWDSIIHNQRKI---IKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVY 352
IV + + + L + A + +E+
Sbjct: 158 IVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCN 216
Score = 56.1 bits (135), Expect = 5e-09
Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 9/137 (6%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEP-- 62
++++G+ VGKS+ N + R ++ + + IIDT G
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101
Query: 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP------IVL 116
+ ++ + I+ ++ + DKL+ + S IV
Sbjct: 102 YINDMALNIIKSFLLDKTIDV-LLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 160
Query: 117 VINKSENINSSISLDFY 133
+ + + + D +
Sbjct: 161 LTHAQFSPPDGLPYDEF 177
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 85.5 bits (211), Expect = 2e-18
Identities = 40/207 (19%), Positives = 66/207 (31%), Gaps = 18/207 (8%)
Query: 119 NKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIH 178
+++ ++ SS + F + G IIS N I+ + + I
Sbjct: 11 DENNDLPSSFTGYFKKFNTGR-KIISQEILNLIELRMR---AGNIQLTNSAISDALKEID 66
Query: 179 SIEYIKVAIVGKPNVGKSTLINSLLG----ENRVITYDTPGTTRDSIKSLFEYNNKKYIL 234
S + VA+ G+ GKS+ IN+L G E T + N +
Sbjct: 67 S-SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPNIPNVVF 124
Query: 235 IDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR 294
D GI F L+ + ++ + DI+IA I +
Sbjct: 125 WDLPGIGS--------TNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK 176
Query: 295 SLIVCVNKWDSIIHNQRKIIKNNIKKK 321
K DS I N+ K+
Sbjct: 177 EFYFVRTKVDSDITNEADGEPQTFDKE 203
Score = 60.5 bits (146), Expect = 3e-10
Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 11/130 (8%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTN----SRDALVANYPGLTRDRHYGEGYIGKKSFIIIDT 57
+ + G GKS+ N L A +T +RH + + + + D
Sbjct: 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDL 127
Query: 58 GGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117
G T K E D I I R + D I + + V
Sbjct: 128 PGIG----STNFPPDTYLEKMKFYEYDFFIIISATR--FKKNDIDIAKAISMMKKEFYFV 181
Query: 118 INKSENINSS 127
K ++ ++
Sbjct: 182 RTKVDSDITN 191
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 72.9 bits (180), Expect = 2e-15
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 1 MKPVLV-LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
MK + L+G PNVGKST+FN LT + N+PG+T ++ GE + F ++D G
Sbjct: 1 MKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
Query: 60 F---------EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKS 110
E + I++E + D+++ IVD +E++ +T L +
Sbjct: 60 VYSLTANSIDEIIARDYIINE----------KPDLVVNIVDATA--LERNLYLTLQLMEM 107
Query: 111 GQPIVLVINKS-ENINSSISLDFYELG--IGNPHI-ISALYGNGIKNFLENI 158
G ++L +NK + I +D +L +G + +SA GI+ + I
Sbjct: 108 GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 159
Score = 52.1 bits (126), Expect = 3e-08
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G PNVGKST+ N+L GEN + + PG T + + FEYN +K+ ++D G+
Sbjct: 4 YEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 74.3 bits (183), Expect = 4e-15
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 15/168 (8%)
Query: 1 MKPVLV-LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
MK + + L+G PN GK+TLFN+LT SR V N+ G+T +R G+ ++D G
Sbjct: 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
Query: 60 ---FEPEVKKGIMHEMTKQTKQAIIES--DIIIFIVDGRQGLVEQDKLITNFLRKSGQPI 114
+ + E + I+ D++I +VD +E++ +T L + G P
Sbjct: 60 TYSLTTISSQTSLDE--QIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPC 115
Query: 115 VLVINKS-ENINSSISLDFYELG--IGNPHI-ISALYGNGIKNFLENI 158
++ +N +I ++ L +G P I + + G GI+ I
Sbjct: 116 IVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAI 163
Score = 51.6 bits (124), Expect = 1e-07
Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 34/186 (18%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI- 240
+ + ++G PN GK+TL N L G RV + G T + + F + + L+D G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTY 61
Query: 241 -----RRRNKTFEVIEKFSVIKTLKSILE--ANVVILLLDAQQ-----NISAQDINIANF 288
+ E I IL A+++I ++DA ++ Q
Sbjct: 62 SLTTISSQTSLDEQI-------ACHYILSGDADLLINVVDASNLERNLYLTLQ------- 107
Query: 289 IYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ E G IV +N D +I + + +L + + + I + +I
Sbjct: 108 LLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIP----LVSTRGRGIEALKLAI 163
Query: 349 NHVYDS 354
+ +
Sbjct: 164 DRYKAN 169
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 73.5 bits (181), Expect = 5e-15
Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 34/196 (17%)
Query: 1 MKPVLV-LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+ V V L G PNVGK++LFN LT ++ VAN+PG+T ++ G + +ID G
Sbjct: 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
Query: 60 F---------EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKS 110
E + ++ ++D++I + D EQ + + +
Sbjct: 62 TYSLGYSSIDEKIARDYLLKG----------DADLVILVADSVN--PEQSLYLLLEILEM 109
Query: 111 GQPIVLVINKS-ENINSSISLDFYELG--IGNPHI-ISALYGNGIKNFLENILTIELPYK 166
+ ++L + E + + +D YEL +G P + S++ G G++ E I+
Sbjct: 110 EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIV------- 162
Query: 167 KFFKKKEFTNIHSIEY 182
++ +K + ++Y
Sbjct: 163 EYAQKNTILHRMILDY 178
Score = 53.1 bits (128), Expect = 4e-08
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 30/186 (16%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
+KVA+ G PNVGK++L N+L G V + PG T + + +F Y LID G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANW--PGVTVEKKEGVFTYKGYTINLIDLPGTY 63
Query: 242 --RRNKTFEVIEKFSVIKTLKSILE--ANVVILLLDAQQ-----NISAQDINIANFIYES 292
+ E I +L+ A++VIL+ D+ + + I E
Sbjct: 64 SLGYSSIDEKI-------ARDYLLKGDADLVILVADSVNPEQSLYLLLE-------ILEM 109
Query: 293 GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVY 352
+ +I+ + D KI + ++K L S++ + E I
Sbjct: 110 EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVF----TSSVTGEGLEELKEKIVEYA 165
Query: 353 DSSIIH 358
+ I
Sbjct: 166 QKNTIL 171
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 71.0 bits (175), Expect = 1e-14
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 1 MKPVLV-LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
MK + L+G PNVGKST+FN LT + N+PG+T ++ GE + F ++D G
Sbjct: 5 MKSYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 63
Query: 60 F---------EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKS 110
E + I++E + D+++ IVD +E++ +T L +
Sbjct: 64 VYSLTANSIDEIIARDYIINE----------KPDLVVNIVDATA--LERNLYLTLQLMEM 111
Query: 111 GQPIVLVINKS-ENINSSISLDFYELG--IGNPHI-ISALYGNGIKNFLENI 158
G ++L +NK + I +D +L +G + +SA GI+ + I
Sbjct: 112 GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 163
Score = 51.8 bits (125), Expect = 4e-08
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G PNVGKST+ N+L GEN + + PG T + + FEYN +K+ ++D G+
Sbjct: 8 YEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 72.7 bits (179), Expect = 1e-14
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS----ENI 124
M + ++ + + DI+ +VD R + ++ +I + L+ +P ++++NK+ +
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADAAV 67
Query: 125 NSSISLDFYELGIGNPHI-ISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYI 183
+ +E G + I+++ G G+ + I + K I
Sbjct: 68 TQQW-KEHFE-NQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA----I 121
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDS--IKSLFEYNNKKYILIDTAGI 240
+ I+G PNVGKSTLIN L +N T D PG T +K K+ L+DT GI
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-----GKELELLDTPGI 175
Score = 48.5 bits (116), Expect = 2e-06
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 2 KPVLVLV-GRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+ + L+ G PNVGKSTL NRL A + PG+T + + K ++DT G
Sbjct: 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW---VKVGKELELLDTPG 174
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 68.9 bits (169), Expect = 2e-13
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG---FEPE 63
L+G PN GK+TLFN LTN+ V N+PG+T ++ GE +G+ I D G
Sbjct: 6 LIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVAN 64
Query: 64 VKKGIMHEMTKQTKQAIIES--DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS 121
+ E + Q++I+ D II ++D +E+ +T+ L + G+P+V+ +N
Sbjct: 65 AEGISQDE--QIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMM 120
Query: 122 -ENINSSISLDFYELG--IGNPHI-ISALYGNGIKNFLENIL 159
+ IS+D +L +G I I A GI +++L
Sbjct: 121 DIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLL 162
Score = 52.7 bits (127), Expect = 6e-08
Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 35/208 (16%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI- 240
++G PN GK+TL N+L N RV + PG T + F + D G+
Sbjct: 2 THALLIGNPNCGKTTLFNALTNANQRVGNW--PGVTVEKKTGEFLLGEHLIEITDLPGVY 59
Query: 241 --RRRNKTF---EVIEKFSVIKTLKSILE--ANVVILLLDAQQ-----NISAQDINIANF 288
+ E I +S+++ + +I ++DA +++Q
Sbjct: 60 SLVANAEGISQDEQI-------AAQSVIDLEYDCIINVIDACHLERHLYLTSQ------- 105
Query: 289 IYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
++E G+ ++V +N D H I ++ L I A K I + +S+
Sbjct: 106 LFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIP----IQAHKNIGIPALQQSL 161
Query: 349 NHVYDSSI-IHLSTSRITRALISAIKNH 375
H + LS S + +++ ++N
Sbjct: 162 LHCSQKIKPLKLSLSVAAQQILNDLENQ 189
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 69.6 bits (170), Expect = 3e-13
Identities = 48/209 (22%), Positives = 76/209 (36%), Gaps = 43/209 (20%)
Query: 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS----ENINS 126
+ + +++ IVD + F PI+LV NK+ ++
Sbjct: 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPRSVKY 117
Query: 127 SISLD-----FYELGIGNPHI--ISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHS 179
L ELG+ + +SA G G+ +E I +++
Sbjct: 118 PKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAI--------NRYREG------- 162
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLGE-----NRVITYDTPGTTRDSIKSLFEYNNKKYIL 234
V +VG NVGKST IN ++ E N + T PGTT D I+ L
Sbjct: 163 ---GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE---IPLESGATL 216
Query: 235 IDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263
DT GI ++ ++ + LK I
Sbjct: 217 YDTPGIINHHQMAHFVDA----RDLKIIT 241
Score = 43.8 bits (103), Expect = 6e-05
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 7 LVGRPNVGKSTLFNRLTN-----SRDALVANYPGLTRD 39
+VG NVGKST NR+ + +PG T D
Sbjct: 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD 204
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 68.1 bits (167), Expect = 4e-13
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+ + LVG PNVGK+T+FN LT R V N+PG+T ++ G +K F+++D G
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
Query: 61 ---------EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSG 111
E + I+ +D+I+ IVD + ++ +T L +
Sbjct: 61 YSLTAHSIDELIARNFILDG----------NADVIVDIVDSTC--LMRNLFLTLELFEME 108
Query: 112 QP-IVLVINKS-ENINSSISLDFYELG--IGNPHI-ISALYGNGIKNFLENILTIELPYK 166
I+LV+NK +D ++ +G P I +A G G++ I
Sbjct: 109 VKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIA------- 161
Query: 167 KFFKKKEFTNIHSIEY 182
+ K TN Y
Sbjct: 162 LMAEGKVTTNPIIPRY 177
Score = 50.4 bits (121), Expect = 3e-07
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
VA+VG PNVGK+T+ N+L G V + PG T + + + EY K+++++D GI
Sbjct: 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNW--PGVTVEKKEGIMEYREKEFLVVDLPGI 60
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 68.1 bits (167), Expect = 4e-13
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 27/166 (16%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG------F 60
L+G PN GK++LFN +T V N+PG+T +R G K I D G +
Sbjct: 8 LIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNKD-LEIQDLPGIYSMSPY 65
Query: 61 EPE---VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117
PE + ++ + +D I+ +VD +E++ +T L ++G P+ +
Sbjct: 66 SPEAKVARDYLLSQ----------RADSILNVVDATN--LERNLYLTTQLIETGIPVTIA 113
Query: 118 INKS-ENINSSISLDFYELG--IGNPHI-ISALYGNGIKNFLENIL 159
+N ++ +L +G P + SAL G+ ++
Sbjct: 114 LNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAA 159
Score = 49.2 bits (118), Expect = 8e-07
Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 31/202 (15%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
++A++G PN GK++L N + G N RV + PG T + KS NK + D GI
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNW--PGVTVER-KSGLVKKNKDLEIQDLPGIY 60
Query: 242 --RRNKTFEVIEKFSVIKTLKSILE--ANVVILLLDAQQ-----NISAQDINIANFIYES 292
+ +L A+ ++ ++DA ++ Q + E+
Sbjct: 61 SMSPYSPEAKV-------ARDYLLSQRADSILNVVDATNLERNLYLTTQ-------LIET 106
Query: 293 GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVY 352
G + + +N D + +KI + + L A SA+K ++ ++ H
Sbjct: 107 GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVA----TSALKQTGVDQVVKKAAHTT 162
Query: 353 DSSIIHLSTSRITRALISAIKN 374
S++ L+ L +AI
Sbjct: 163 TSTVGDLAFPIYDDRLEAAISQ 184
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 66.9 bits (164), Expect = 1e-12
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 37/178 (20%)
Query: 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS----ENI 124
+ + +Q K + + ++ + D R + S + ++++NK E
Sbjct: 8 IEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD----FSRKETIILLNKVDIADEKT 63
Query: 125 NSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIK 184
++F++ +I+ G K L KK + +
Sbjct: 64 TKKW-VEFFKKQ--GKRVITTHKGEPRKVLL----------KKLSFDRL---------AR 101
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDS--IKSLFEYNNKKYILIDTAGI 240
V IVG PN GKST+IN L G+ PG T+ ++DT GI
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-----ENGVKILDTPGI 154
Score = 51.1 bits (123), Expect = 2e-07
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 2 KPVLVLV-GRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGG 59
+ VL+ G PN GKST+ N+L R + V PG+T+ G + + I+DT G
Sbjct: 98 RLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITK----GIQWFSLENGVKILDTPG 153
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 63.8 bits (156), Expect = 5e-12
Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 39/201 (19%)
Query: 176 NIHSIEYIK---------------VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDS 220
I +E +K VA VG+ NVGKS+L+N+L TPG TR S
Sbjct: 2 IIRDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTR-S 60
Query: 221 IKSLFEYNNKKYILID-------TAGIRRRNKTFEVIEK-FSVIKTLKSILEANVVILLL 272
I + + N+K Y +D + R ++E F +L+ V LL+
Sbjct: 61 I-NFYLVNSKYY-FVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQM------VFLLV 112
Query: 273 DAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332
D + D+ + ++ + + K D + ++R +K +
Sbjct: 113 DGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172
Query: 333 ISAIK-------LNNINSFME 346
S++ L+ I++ ++
Sbjct: 173 TSSVTGEGISELLDLISTLLK 193
Score = 50.3 bits (121), Expect = 2e-07
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 17/168 (10%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDT-G-GFEPEV 64
VGR NVGKS+L N L N + A V+ PG TR ++ Y+ + +D G G+ +V
Sbjct: 28 FVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF---YLVNSKYYFVDLPGYGY-AKV 83
Query: 65 KKGIMHEMTKQTKQAIIESD---IIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS 121
K + + ++ +VDGR + D ++ +++ P +V+ K
Sbjct: 84 SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKM 143
Query: 122 ENINSSI---SLDFYELGI---GNPHII--SALYGNGIKNFLENILTI 161
+ + S L+ + G II S++ G GI L+ I T+
Sbjct: 144 DKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTL 191
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 64.6 bits (157), Expect = 5e-12
Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 10/153 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGT-TRDSIKSLFEYNNKKYILIDTAGIR 241
+++ +VGK GKS NS+LG + + T+ K + + +++DT GI
Sbjct: 30 LRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIF 89
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE-----SGRSL 296
K +I+ + +LL+ + ++ I + + +
Sbjct: 90 DTEVPNAETSK-EIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFM 148
Query: 297 IVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAM 329
I+ + D + + +++ + M
Sbjct: 149 ILIFTRKD---DLGDTNLHDYLREAPEDIQDLM 178
Score = 53.8 bits (129), Expect = 2e-08
Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 7/135 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPG-LTRDRHYGEGYIGKKSFIIIDTGGFE-- 61
+VLVG+ GKS N + + +T+ + +++DT G
Sbjct: 32 IVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDT 91
Query: 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVD-GRQGLVEQ---DKLITNFLRKSGQPIVLV 117
E+ + ++ +V GR E +K++ F ++ ++L+
Sbjct: 92 EVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILI 151
Query: 118 INKSENINSSISLDF 132
+ +++ + D+
Sbjct: 152 FTRKDDLGDTNLHDY 166
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 61.0 bits (149), Expect = 4e-11
Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 33/186 (17%)
Query: 176 NIHSIEYIK---------------VAIVGKPNVGKSTLINSLLGENR-VITYDTPGTTRD 219
+ E + +A+ G+ NVGKS+ INSL+ T PG T+
Sbjct: 2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQ- 60
Query: 220 SIKSLFEYNNKKYILID-------TAGIRRRNKTFEVIEK-FSVIKTLKSILEANVVILL 271
++ + + N++ + +D R +IE + + LK+ V+ +
Sbjct: 61 TL-NFYIINDELH-FVDVPGYGFAKVSKSEREAWGRMIETYITTREELKA------VVQI 112
Query: 272 LDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFN 331
+D + S D+ + F+ G +IV K D I + +++ LN
Sbjct: 113 VDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172
Query: 332 FISAIK 337
S+
Sbjct: 173 LFSSET 178
Score = 46.4 bits (111), Expect = 4e-06
Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 18/170 (10%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRD-ALVANYPGLTRDRHYGEGYIGKKSFIIIDT-G-GFEP 62
L GR NVGKS+ N L N ++ A ++ PG T+ ++ YI +D G GF
Sbjct: 27 ALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF---YIINDELHFVDVPGYGF-A 82
Query: 63 EVKKGIMHEMTKQTKQAIIESD---IIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
+V K + + I + ++ IVD R D + FL+ G P++++
Sbjct: 83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT 142
Query: 120 KSENINSS---ISLDFYELGIG---NPHII--SALYGNGIKNFLENILTI 161
K++ I + +I S+ G I +
Sbjct: 143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM 192
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 60.9 bits (148), Expect = 8e-11
Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 27/198 (13%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF-- 60
++L G PNVGKS+ N ++ + + V +Y T++ + G + IIDT G
Sbjct: 30 KTIILSGAPNVGKSSFMNIVSRA-NVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88
Query: 61 EPEVKKGIMHEMTKQTKQAI--IESDIIIFIVDGRQGLVEQDKLITNFLRK-----SGQP 113
+ + T A+ I +I+FI+D + K N S +
Sbjct: 89 RAFENRNTIE---MTTITALAHIN-GVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS 144
Query: 114 IVLVINKS---------ENINSSISLDFYELGIGNPHI-ISALYGNGI---KNFLENILT 160
IV+ NK + I + S L G G+ K +L
Sbjct: 145 IVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLK 204
Query: 161 IELPYKKFFKKKEFTNIH 178
+ +++ N
Sbjct: 205 NDQAESILLDQEQLLNTK 222
Score = 51.3 bits (123), Expect = 1e-07
Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 19/195 (9%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG-IRRR 243
+ + G PNVGKS+ +N + V TT++ F++ KY +IDT G + R
Sbjct: 32 IILSGAPNVGKSSFMNIVSR-ANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE-----SGRSLIV 298
+ IE + I L I V++ ++D + N Y S +S+++
Sbjct: 91 FENRNTIEMTT-ITALAHI--NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVI 147
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF--ISAIKLNNINSFMESINHVYDSSI 356
NK D + I + K++ F S + + ++ +
Sbjct: 148 GFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGV---EQAKITACE--- 201
Query: 357 IHLSTSRITRALISA 371
L + L+
Sbjct: 202 -LLKNDQAESILLDQ 215
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 61.9 bits (151), Expect = 1e-10
Identities = 41/180 (22%), Positives = 68/180 (37%), Gaps = 35/180 (19%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRD---RHYGEGYIGKKSFIIIDTGG 59
P + +VG N GK++LFN LT V T I + +++DT G
Sbjct: 180 PSIGIVGYTNSGKTSLFNSLTGL-TQKVDTKLFTTMSPKRYAI---PINNRKIMLVDTVG 235
Query: 60 FEPEVKKGIMH------EMTKQTKQAIIESDIIIFIVDGRQ---GLVEQDKLITNFLRK- 109
F I + T SD +I ++D L+E + LR+
Sbjct: 236 F-------IRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREI 288
Query: 110 --SGQPIVLVINKSENINSSISLDFYELGIGNPHI---------ISALYGNGIKNFLENI 158
SG+PI++ +NK + IN + + + + ISAL ++ + I
Sbjct: 289 GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKI 348
Score = 52.3 bits (126), Expect = 1e-07
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 35/187 (18%)
Query: 181 EYIKVAIVGKPNVGKSTLINSL-----LGENRVI-TYDTPGTTRDSIKSLFEYNNKKYIL 234
+ IVG N GK++L NSL + ++ T NN+K +L
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP--KRYA-----IPINNRKIML 230
Query: 235 IDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA-------QQNISA-----QD 282
+DT G R ++++ F V TL ++ +IL++D+ + + + ++
Sbjct: 231 VDTVGFIRGIPP-QIVDAFFV--TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILRE 287
Query: 283 INIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFN-FISAIKLNNI 341
I + SG+ ++V +NK D I + K + K S ISA+K N+
Sbjct: 288 IGV------SGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNL 341
Query: 342 NSFMESI 348
+ I
Sbjct: 342 ELLRDKI 348
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 59.2 bits (144), Expect = 2e-10
Identities = 36/206 (17%), Positives = 80/206 (38%), Gaps = 41/206 (19%)
Query: 176 NIHSIEYIK---------------VAIVGKPNVGKSTLINSLLGENR-VITYDTPGTTRD 219
N ++ VA G+ N GKS+ +N+L + T TPG T+
Sbjct: 5 NYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ- 63
Query: 220 SIKSLFEYNNKKYILID-------TAGIRRRNKTFEVIEK-FSVIKTLKSILEANVVILL 271
I +LFE + K L+D + K + + ++L+ +++L
Sbjct: 64 LI-NLFEVADGKR-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQG------LVVL 115
Query: 272 LDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFN 331
+D + + D + + +S +++V + K D + RK N +++ + + +
Sbjct: 116 MDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 175
Query: 332 FI-SAIK-------LNNINSFMESIN 349
S++K ++++ +
Sbjct: 176 ETFSSLKKQGVDKLRQKLDTWFSEMQ 201
Score = 47.6 bits (114), Expect = 1e-06
Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 23/172 (13%)
Query: 7 LVGRPNVGKSTLFNRLTNSRD-ALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF----E 61
GR N GKS+ N LTN + A + PG T+ + + ++D G+
Sbjct: 31 FAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL---FEVADGKRLVDLPGYGYAEV 87
Query: 62 PEVKKGIMHEMTK---QTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVI 118
PE K + +Q++ ++ ++D R L + D+ + + S +++++
Sbjct: 88 PEEMKRKWQRALGEYLEKRQSLQG---LVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144
Query: 119 NKSENINSS---ISLDFYELGIGN------PHIISALYGNGIKNFLENILTI 161
K++ + S L+ + S+L G+ + + T
Sbjct: 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 60.6 bits (147), Expect = 2e-10
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 19/189 (10%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF- 60
P +V+ G PNVGKSTL LT ++ +A+YP TR + G+ G + IIDT G
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYFRYQIIDTPGLL 225
Query: 61 -EPEVKKGIMHEMTKQTKQAIIE-SDIIIFIVD----GRQGLVEQDKLITNFLRK-SGQP 113
P ++ + KQ A+ ++II+I D L EQ L + P
Sbjct: 226 DRPISERNEIE---KQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP 282
Query: 114 IVLVINKS-----ENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKF 168
++VINK ENI E G+ NP ISAL G GI E I+ P +
Sbjct: 283 FLVVINKIDVADEENIKRLEK-FVKEKGL-NPIKISALKGTGIDLVKEEIIKTLRPLAEK 340
Query: 169 FKKKEFTNI 177
+++
Sbjct: 341 VAREKIERE 349
Score = 41.0 bits (96), Expect = 5e-04
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 185 VAIVGKPNVGKSTLINSL-LGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
V I G PNVGKSTL+ +L + + +Y P TTR FE +Y +IDT G+ R
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASY--PFTTRGINVGQFEDGYFRYQIIDTPGLLDR 227
Query: 244 NKTFE---VIEKFSVIKTLKSILEANVVILLLDA--QQNISAQDINIANFIYE---SGRS 295
IEK ++ L N++I + D ++
Sbjct: 228 P--ISERNEIEKQAI---LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP 282
Query: 296 LIVCVNKWDSIIHNQRKIIKNNIKKK 321
+V +NK D K ++ +K+K
Sbjct: 283 FLVVINKIDVADEENIKRLEKFVKEK 308
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 59.3 bits (143), Expect = 4e-10
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGT-TRDSIKSLFEYNNKKYILIDTAGIR 241
+++ +VGK GKS NS+L + + T T+ KS + N++ ++IDT +
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF 82
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE-----SGRSL 296
E + V + V+LL+ ++QD A + E +
Sbjct: 83 SWKDHCEAL-YKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHT 141
Query: 297 IVCVNKWD 304
IV +
Sbjct: 142 IVLFTHKE 149
Score = 47.4 bits (112), Expect = 3e-06
Identities = 20/137 (14%), Positives = 50/137 (36%), Gaps = 7/137 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPG-LTRDRHYGEGYIGKKSFIIIDTGGF--E 61
++LVG+ GKS N + + LT+ +G G + +IIDT
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSW 84
Query: 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPI----VLV 117
+ + + E+ + + +++ + + + + G+ +++
Sbjct: 85 KDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVL 144
Query: 118 INKSENINSSISLDFYE 134
E++N +D+
Sbjct: 145 FTHKEDLNGGSLMDYMH 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 4e-10
Identities = 44/352 (12%), Positives = 121/352 (34%), Gaps = 56/352 (15%)
Query: 60 FEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
FE + + ++I+ + I I+ + + +L L K + + +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 120 KSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPY-----KKFFK-KKE 173
+ IN + + P +++ +Y ++ L N + Y + + K ++
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 174 FTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRV-------ITYDTPGTTRDSIKSLFE 226
+ + V I G GK+ + + +V I + +S +++ E
Sbjct: 144 LLELRPAKN--VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLE 200
Query: 227 YNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT-LKSILEANV---VILLLDAQQN----- 277
K ID R + + + + I+ L+ +L++ +L+L QN
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 278 ---------ISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ-----RKIIKNNIKK--- 320
++ + + +F+ + + I + ++ ++ K + +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 321 ---KLNFLSFAMFNFISAIKLNNINSF-------MESINHVYDSSIIHLSTS 362
N ++ I+ + + ++ + + + +SS+ L +
Sbjct: 321 EVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Score = 48.7 bits (115), Expect = 3e-06
Identities = 60/462 (12%), Positives = 139/462 (30%), Gaps = 116/462 (25%)
Query: 1 MKPV--LVLVGRPNVGKSTL-------------FNR----LT----NSRDALVANYPGLT 37
++P +++ G GK+ + + L NS + ++ L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 38 R--DRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA-IIESDI----IIFIV 90
D ++ + I + + E+++ + K + ++ ++
Sbjct: 207 YQIDPNWTSRSDHSSN-IKLRIHSIQAELRRLLKS---KPYENCLLVLLNVQNAKAWNAF 262
Query: 91 DGR-QGLV-EQDKLITNFLRKSGQPIVLVINKSENINSSISLDFYE--LGI--------- 137
+ + L+ + K +T+FL + + + + S + L
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 138 --GNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGK 195
NP +S + I++ L T + +K K T I I+ +
Sbjct: 323 LTTNPRRLS-IIAESIRDGLA---TWD-NWKHVNCDK-LTTI-----IESS--------- 362
Query: 196 STLINSLLGENRVITYDTPGTTRDSIKSL--FEYNNKKYILIDTAGIRRRNKTFEVIEKF 253
+N L P R L F + I + + +
Sbjct: 363 ---LNVL----------EPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKSDVM-- 405
Query: 254 SVIKTL--KSILE---ANVVILLLDAQQNISAQDINIANF---IYESGRSLIVCVNKWDS 305
V+ L S++E I + + + N I + ++ + D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDL 464
Query: 306 IIHNQRKIIKN-------NIKKKLNFLSFAM----FNFISAIKLNNINSFMESINHVYDS 354
I + + NI+ F M F F+ K+ + ++ + + ++
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-KIRHDSTAWNASGSILNT 523
Query: 355 SIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKN 396
L + + I N P ++L+ L + + +N
Sbjct: 524 ----LQQLKFYKPYIC--DNDPK-YERLVNAILDFLPKIEEN 558
Score = 35.2 bits (80), Expect = 0.040
Identities = 24/171 (14%), Positives = 63/171 (36%), Gaps = 25/171 (14%)
Query: 236 DTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-SAQDINIANFIYESGR 294
+T + + K +++ F + V D ++I S ++I+ I S
Sbjct: 10 ETGEHQYQYK--DILSVF--EDAFVDNFDCKDV---QDMPKSILSKEEID---HIIMSKD 59
Query: 295 SLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI-SAIKLNNINSFMESINHVYD 353
++ + + +++ Q ++++ +++ L + F+ S IK M + ++
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLR----INYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 354 SSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHG 404
++ + + R + KLR A + ++I G
Sbjct: 116 RDRLYNDNQVFAK--------YNVSRLQPYL-KLRQALLELRPAKNVLIDG 157
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 58.5 bits (141), Expect = 6e-10
Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 9/147 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTP-GTTRDSIKSLFEYNNKKYILIDTAGIR 241
++ +VG+ GKS NS+LG+ R + TR ++ ++DT I
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIF 81
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE-----SGRSL 296
+ +LL+ +AQD + + + +
Sbjct: 82 SSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWM 141
Query: 297 IVCVNKWDSIIHNQRKIIKNNIKKKLN 323
++ + + + + + + N
Sbjct: 142 VIVFTRKEDL---AGGSLHDYVSNTEN 165
Score = 43.1 bits (101), Expect = 8e-05
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 8/136 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYP-GLTRDRHYGEGYIGKKSFIIIDTGGF--- 60
L+LVGR GKS N + R +TR G K ++DT
Sbjct: 24 LILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83
Query: 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPI----VL 116
+ E + ++ + + + + + G+ + V+
Sbjct: 84 QVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVI 143
Query: 117 VINKSENINSSISLDF 132
V + E++ D+
Sbjct: 144 VFTRKEDLAGGSLHDY 159
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 57.7 bits (140), Expect = 6e-10
Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 35/188 (18%)
Query: 176 NIHSIEYIK---------------VAIVGKPNVGKSTLINSLLGENR-VITYDTPGTTRD 219
+H + +A G+ N GKST IN L + R TPG T+
Sbjct: 8 LLHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQ- 66
Query: 220 SIKSLFEYNNK---KYILID-------TAGIRRRNKTFEVIEK-FSVIKTLKSILEANVV 268
I + F L+D + +++ L +
Sbjct: 67 HI-NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCG------M 119
Query: 269 ILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFA 328
IL++DA++ ++ D + + +G+ + + K D + + +K L+ A
Sbjct: 120 ILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179
Query: 329 MFNFISAI 336
+ +
Sbjct: 180 GYAGKLTV 187
Score = 52.3 bits (126), Expect = 5e-08
Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 22/173 (12%)
Query: 7 LVGRPNVGKSTLFNRLTNSRD-ALVANYPGLTRD-RHYGEGYIGKKSFIIIDT-G-GFEP 62
GR N GKST N L N + A + PG T+ ++ G + ++D G G+
Sbjct: 34 FAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGY-A 92
Query: 63 EVKKGIMHEMTKQTKQAIIESD---IIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
EV + + +I ++D R+ L E D+ + + +G+PI ++
Sbjct: 93 EVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLT 152
Query: 120 KS------------ENINSSISLDFYELGIGNPHII--SALYGNGIKNFLENI 158
K S+ G + SAL G+ + I
Sbjct: 153 KCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALI 205
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 54.1 bits (131), Expect = 4e-08
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 8 VGRPNVGKSTLFNRLTNSRDALVANYP 34
VG PNVGKST F +T S ANYP
Sbjct: 26 VGMPNVGKSTFFRAITKSVLGNPANYP 52
Score = 39.0 bits (92), Expect = 0.002
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 184 KVAIVGKPNVGKSTLINSL 202
K IVG PNVGKST ++
Sbjct: 22 KTGIVGMPNVGKSTFFRAI 40
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 52.7 bits (127), Expect = 1e-07
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYP 34
+VG+PNVGKST F+ T D +ANYP
Sbjct: 5 VVGKPNVGKSTFFSAATLV-DVEIANYP 31
Score = 44.2 bits (105), Expect = 4e-05
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 183 IKVAIVGKPNVGKSTLINSL 202
+++ +VGKPNVGKST ++
Sbjct: 1 MEIGVVGKPNVGKSTFFSAA 20
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 52.1 bits (126), Expect = 1e-07
Identities = 20/27 (74%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 8 VGRPNVGKSTLFNRLTNSRDALVANYP 34
VG PNVGKSTLFN LT + +AL ANYP
Sbjct: 7 VGLPNVGKSTLFNALTRA-NALAANYP 32
Score = 39.4 bits (93), Expect = 0.002
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 184 KVAIVGKPNVGKSTLINSL 202
V IVG PNVGKSTL N+L
Sbjct: 3 AVGIVGLPNVGKSTLFNAL 21
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 50.5 bits (122), Expect = 5e-07
Identities = 18/27 (66%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 8 VGRPNVGKSTLFNRLTNSRDALVANYP 34
VG PNVGKSTLFN LT + ANYP
Sbjct: 8 VGLPNVGKSTLFNALTKAG-IEAANYP 33
Score = 38.9 bits (92), Expect = 0.002
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 184 KVAIVGKPNVGKSTLINSL 202
K IVG PNVGKSTL N+L
Sbjct: 4 KCGIVGLPNVGKSTLFNAL 22
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 49.8 bits (120), Expect = 9e-07
Identities = 18/27 (66%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 8 VGRPNVGKSTLFNRLTNSRDALVANYP 34
VG PNVGKST FN LTNS A N+P
Sbjct: 28 VGLPNVGKSTFFNVLTNS-QASAENFP 53
Score = 39.0 bits (92), Expect = 0.002
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 184 KVAIVGKPNVGKSTLINSL 202
K+ IVG PNVGKST N L
Sbjct: 24 KIGIVGLPNVGKSTFFNVL 42
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 48.4 bits (116), Expect = 3e-06
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 30/132 (22%)
Query: 35 GLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQ 94
G+T D Y K+ FII DT G E + T+ D+ I +VD R
Sbjct: 89 GITIDVAYRYFSTAKRKFIIADTPGHE---------QYTRNMATGASTCDLAIILVDARY 139
Query: 95 GLVEQDK---LITNFLR-KSGQPIVLVINK------SENINSSISLDFYE----LGIGNP 140
G+ Q + I + L K IV+ INK E + SI D+ + +
Sbjct: 140 GVQTQTRRHSYIASLLGIKH---IVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPT 196
Query: 141 HI----ISALYG 148
+ +SAL G
Sbjct: 197 TMAFVPMSALKG 208
Score = 41.5 bits (98), Expect = 4e-04
Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 56/203 (27%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDT--------------------------- 213
E ++ G + GKSTLI LL ++++I D
Sbjct: 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGL 82
Query: 214 -----PGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVV 268
G T D F +K+I+ DT G T + S ++
Sbjct: 83 QAEREQGITIDVAYRYFSTAKRKFIIADTPG--HEQYTRNMATGAST---------CDLA 131
Query: 269 ILLLDAQQNISAQ---DINIANFIYESG-RSLIVCVNKWDSIIHNQRKI--IKNNIKKKL 322
I+L+DA+ + Q IA+ + G + ++V +NK D ++R IK + K
Sbjct: 132 IILVDARYGVQTQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFESIKADYLKFA 188
Query: 323 NFLSFAMFNF----ISAIKLNNI 341
++F +SA+K +N+
Sbjct: 189 EGIAFKPTTMAFVPMSALKGDNV 211
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 45.7 bits (107), Expect = 2e-05
Identities = 23/179 (12%), Positives = 56/179 (31%), Gaps = 50/179 (27%)
Query: 183 IKVAIVGKPNVGKSTLINSLLG----------------------ENRVITYDTPGTTRDS 220
++ ++G GKST +N+L+G E +V + G +
Sbjct: 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQ 129
Query: 221 IKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL----------------- 263
+ + + + K ++V++ ++L
Sbjct: 130 LDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA 189
Query: 264 ----------EANVVILLLDAQQNISAQDIN-IANFIYESGRSLIVCVNKWDSIIHNQR 311
+ ++ ++ A Q + + + N+I G ++ VN WD + +
Sbjct: 190 RNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLI 248
Score = 42.3 bits (98), Expect = 3e-04
Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDK-LITNFL 107
+K I+D+ G + + + I+F++ Q ++ + N++
Sbjct: 173 QKGIEIVDSPGL------NDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226
Query: 108 RKSGQPIVLVINKSENINSSI 128
+ G + ++N + + S+
Sbjct: 227 KGRGLTVFFLVNAWDQVRESL 247
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 42.5 bits (99), Expect = 2e-04
Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 45/211 (21%)
Query: 156 ENILTIELPYK-KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENR------- 207
+L +E Y+ F + V + G+ + GK++ I LL +
Sbjct: 38 TKLLPLEEHYRFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP 97
Query: 208 --------VITY-----DTPGTT-----RDSIKSLFEYNN----------------KKYI 233
+ + PG + L + N +
Sbjct: 98 EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESIS 157
Query: 234 LIDTAGIRRRNKTFEVIEKFSVIKTLKSILE-ANVVILLLDA-QQNISAQDINIANFIYE 291
+IDT GI K V + L+ E +++ILL DA + IS + +
Sbjct: 158 IIDTPGILSGAKQ-RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG 216
Query: 292 SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL 322
+ V +NK D + Q + + L
Sbjct: 217 HEDKIRVVLNKADMVETQQLMRVYGALMWAL 247
Score = 38.2 bits (88), Expect = 0.005
Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 44/170 (25%)
Query: 2 KPVLVLVGRPNVGKSTL----------------------FNRLTNSRDALVANYPGLTRD 39
KP++++ G+ + GK++ F + + L D
Sbjct: 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVD 124
Query: 40 --------RHYGEGYIGK-----------KSFIIIDTGGFEPEVKKGIM--HEMTKQTKQ 78
+G ++ + +S IIDT G K+ + ++ +
Sbjct: 125 PEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRW 184
Query: 79 AIIESDIIIFIVDGRQGLVEQD-KLITNFLRKSGQPIVLVINKSENINSS 127
D+II + D + + + LR I +V+NK++ + +
Sbjct: 185 FAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQ 234
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 40.3 bits (94), Expect = 4e-04
Identities = 24/200 (12%), Positives = 64/200 (32%), Gaps = 26/200 (13%)
Query: 166 KKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLF 225
+F+ + ++ ++G GKS++ + + +T K
Sbjct: 13 NLYFQGSK---------PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDI 63
Query: 226 EYN-NKKYILIDTAG-IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDI 283
+ + + D G + + TF+ F +I ++DAQ +
Sbjct: 64 SNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR---------GTGALIYVIDAQDDYMEALT 114
Query: 284 NIANFI-----YESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338
+ + + V ++K D + + + + +I ++ N +
Sbjct: 115 RLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF 174
Query: 339 NNINSFMESINHVYDSSIIH 358
+ + SI + S ++
Sbjct: 175 YLTSIYDHSIFEAF-SKVVQ 193
Score = 32.6 bits (74), Expect = 0.16
Identities = 18/139 (12%), Positives = 47/139 (33%), Gaps = 12/139 (8%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGE-GYIGKKSFIIIDTGGF 60
KP ++L+G GKS++ + + + T + + +F I D G
Sbjct: 20 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 79
Query: 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDK-----LITNFLRKSGQPIV 115
+ T + + +I+++D + +E + +
Sbjct: 80 MD------FFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFE 133
Query: 116 LVINKSENINSSISLDFYE 134
+ I+K + ++ ++
Sbjct: 134 VFIHKVDGLSDDHKIETQR 152
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 40.6 bits (96), Expect = 5e-04
Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 54/201 (26%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYP--------GLTRDRHYGEGYIGKKSFIIID-- 56
LVG P+VGKSTL + +++++ +A+Y G+ +G +SF++ D
Sbjct: 163 LVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVE---TDDG----RSFVMADLP 214
Query: 57 -------TGGFEPEVKKGIMHEMTKQTKQAIIE-SDIIIFIVD-----GRQGLVEQDKLI 103
G G+ H+ + IE + +I+ ++D GR + I
Sbjct: 215 GLIEGAHQG-------VGLGHQFLRH-----IERTRVIVHVIDMSGLEGRD-PYDDYLTI 261
Query: 104 TNFLRK-----SGQPIVLVINKSENINSSISLDFY--ELGIGNP-HIISALYGNGIKNFL 155
L + + +P ++V NK + ++ +L+ + +L P ISA+ G++ L
Sbjct: 262 NQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELL 321
Query: 156 ENILTI--ELPYKKFFKKKEF 174
+ P + ++E
Sbjct: 322 FEVANQLENTPEFPLYDEEEL 342
Score = 34.9 bits (81), Expect = 0.041
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 185 VAIVGKPNVGKSTLINSL 202
V +VG P+VGKSTL++ +
Sbjct: 161 VGLVGFPSVGKSTLLSVV 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 39.8 bits (94), Expect = 0.001
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYP 34
LVG PN GKS+L +T + +A YP
Sbjct: 162 LVGYPNAGKSSLLAAMTRAHPK-IAPYP 188
Score = 36.0 bits (84), Expect = 0.021
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 185 VAIVGKPNVGKSTLINSL 202
V +VG PN GKS+L+ ++
Sbjct: 160 VGLVGYPNAGKSSLLAAM 177
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 39.2 bits (91), Expect = 0.002
Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 13/147 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRR 242
K+ ++G+ GKS++ + + G T D S + N L D G
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES------GRSL 296
+ + +K + + V+I + D + +DI I + +
Sbjct: 65 FMENYFTKQKDHIFQ------MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKI 118
Query: 297 IVCVNKWDSIIHNQRKIIKNNIKKKLN 323
V ++K D + ++R+ + + K L+
Sbjct: 119 FVLLHKMDLVQLDKREELFQIMMKNLS 145
Score = 34.6 bits (79), Expect = 0.050
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRD-RHYGEGYIGKKSFIIIDTGG 59
+ L+L+GR GKS++ + + ++ A G T D H ++G + + D GG
Sbjct: 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGG 61
Query: 60 FEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQD-----KLITNFLRKSGQPI 114
+ + + TKQ ++I + D V +D K + + S
Sbjct: 62 QD----VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK 117
Query: 115 VLV-INKSENINSSISLDFYE 134
+ V ++K + + + ++
Sbjct: 118 IFVLLHKMDLVQLDKREELFQ 138
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 37.9 bits (89), Expect = 0.002
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 165 YKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL 224
+ +KV IVG + GKS L++ L V K
Sbjct: 3 HHHHHSSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEES---PEGGRFKKE 59
Query: 225 FEYNNKKYIL--IDTAG 239
+ + Y+L D G
Sbjct: 60 IVVDGQSYLLLIRDEGG 76
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 38.7 bits (91), Expect = 0.002
Identities = 27/142 (19%), Positives = 43/142 (30%), Gaps = 39/142 (27%)
Query: 113 PIVLVINKSENINSSIS------LDFYELGIG-NPHIISALYGNGIKNFLENILTIELPY 165
V+V NK + +N + Y G + +SA G GI
Sbjct: 112 EPVIVFNKIDLLNEEEKKELERWISIYR-DAGYDVLKVSAKTGEGIDEL----------- 159
Query: 166 KKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVI----TYDTPG--TTRD 219
+ + + G VGKS++++ L GE G TT
Sbjct: 160 VDYLEGF-----------ICILAGPSGVGKSSILSRLTGEELRTQEVSEKTERGRHTTTG 208
Query: 220 SIKSLFEYNNKKYILIDTAGIR 241
L + ++ DT G
Sbjct: 209 V--RLIPFGKGSFV-GDTPGFS 227
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 37.9 bits (89), Expect = 0.004
Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 39/142 (27%)
Query: 113 PIVLVINKSENINSSIS------LDFYELGIGNPHIISALYGNGIKNFLENILTIELPYK 166
V+VINK + + + Y + SA G GI+ K
Sbjct: 117 ETVMVINKMDLYDEDDLRKVRELEEIYSG-LYPIVKTSAKTGMGIEEL-----------K 164
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG-------TTRD 219
++ K K + G VGKS+L+N++ ++ + TT
Sbjct: 165 EYLKGK-----------ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTT 213
Query: 220 SIKSLFEYNNKKYILIDTAGIR 241
+ L +++ Y+ +DT G
Sbjct: 214 A--QLLKFDFGGYV-VDTPGFA 232
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 37.2 bits (87), Expect = 0.004
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
+V + G VGKS+L+ + TY T D+ + + + L DT G
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIP--TIEDTYRQVISCDKSVCTLQITDTTG 65
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 36.4 bits (85), Expect = 0.007
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
+ +AI+G+ GKS L L + + YD D+ S +++ L +DTA
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDP--NLEDTYSSEETVDHQPVHLRVMDTAD 78
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 36.0 bits (84), Expect = 0.008
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
+VA+ G VGKS+L+ + +Y T D+ + + + L DT G
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIP--TVEDTYRQVISCDKSICTLQITDTTG 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 36.1 bits (84), Expect = 0.009
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
+K+AI G+ VGKS L+ L + + YD T + + +++ + +DTAG
Sbjct: 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDP--TLESTYRHQATIDDEVVSMEILDTAG 85
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 36.0 bits (84), Expect = 0.010
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--ID 236
S+ +V ++G P VGK++L + G+ ++ D + + + L +D
Sbjct: 1 SMALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVD 58
Query: 237 TAG 239
T
Sbjct: 59 TWE 61
Score = 26.7 bits (60), Expect = 9.9
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 38/135 (28%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY--IGKKSFI--------- 53
+VL+G P VGK++L + + + + +G+ +
Sbjct: 7 VVLLGDPGVGKTSLASLFA---------------GKQERDLHEQLGEDVYERTLTVDGED 51
Query: 54 ----IIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK 109
++DT E ++ K E Q A +I++ + R +L R
Sbjct: 52 TTLVVVDTWEAE-KLDKSWSQESCLQGGSAY----VIVYSIADRGSFESASELRIQLRRT 106
Query: 110 SGQ---PIVLVINKS 121
PI+LV NK+
Sbjct: 107 HQADHVPIILVGNKA 121
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 36.3 bits (84), Expect = 0.010
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
+P +++ G N GK++L LT D++ ++D G
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTT--DSVRPTVVSQE---PLSAADYDGSGVTLVDFPG-- 100
Query: 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVD 91
+ ++++ K +IF+VD
Sbjct: 101 ---HVKLRYKLSDYLKTRAKFVKGLIFMVD 127
Score = 34.3 bits (79), Expect = 0.038
Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 23/132 (17%)
Query: 144 SALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLL 203
++ I + E I + + + I G N GK++L+ L
Sbjct: 19 GSINKRKISQWREWIDEKLGGGSGGGGSYQPS---------IIIAGPQNSGKTSLLTLLT 69
Query: 204 GENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR-RNKTFEVIEKFSVIKTLKSI 262
++ T +++ + + +Y+ L+D G + R K + ++
Sbjct: 70 TDSVRPTV----VSQEPLSAA-DYDGSGVTLVDFPGHVKLRYKLSDYLK--------TRA 116
Query: 263 LEANVVILLLDA 274
+I ++D+
Sbjct: 117 KFVKGLIFMVDS 128
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 36.5 bits (85), Expect = 0.013
Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 41/144 (28%)
Query: 113 PIVLVINKS------ENINSSISLDFYELGIGNP-HIISALYGNGIKNFLENILTIELPY 165
++V+NK + +D Y IG ++S+ +G+K L
Sbjct: 162 EPLIVLNKIDLLDDEGMDFVNEQMDIYR-NIGYRVLMVSSHTQDGLK---------PL-- 209
Query: 166 KKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVI------TYDTPG--TT 217
++ + G+ VGKS+L+N+LLG I G TT
Sbjct: 210 EEALTGR-----------ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTT 258
Query: 218 RDSIKSLFEYNNKKYILIDTAGIR 241
+ L+ + + + ID+ G+R
Sbjct: 259 TAA--RLYHFPHGGDV-IDSPGVR 279
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 35.2 bits (82), Expect = 0.014
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
KV ++G P VGKS L G + + ++ L D
Sbjct: 4 KVLLLGAPGVGKSALARIFGG-VEDGPEAE--AAGHTYDRSIVVDGEEASLMVYDIWE 58
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 35.6 bits (83), Expect = 0.020
Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 42/144 (29%)
Query: 113 PIVLVINK-----SENINSSIS--LDFYELGIG-NPHIISALYGNGIKNFLENILTIELP 164
++ I K ++ +I + Y IG + ++ S+ + + +
Sbjct: 119 QPIICITKMDLIEDQDTEDTIQAYAEDYR-NIGYDVYLTSSKDQDSLADI---------- 167
Query: 165 YKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG-------TT 217
F+ K G+ VGKS+L+N++ E + T + TT
Sbjct: 168 -IPHFQDK-----------TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTT 215
Query: 218 RDSIKSLFEYNNKKYILIDTAGIR 241
R L + + DT G
Sbjct: 216 RHV--ELIHTSGGL--VADTPGFS 235
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 35.1 bits (81), Expect = 0.024
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 10/90 (11%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
+P +++ G N GK++L LT + ++D G
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDS--VRPTVVSQE---PLSAADYDGSGVTLVDFPG-- 64
Query: 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVD 91
+ ++++ K +IF+VD
Sbjct: 65 ---HVKLRYKLSDYLKTRAKFVKGLIFMVD 91
Score = 32.4 bits (74), Expect = 0.16
Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR-R 243
+ I G N GK++L+ L ++ T +++ + + +Y+ L+D G + R
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRPTV----VSQEPLSAA-DYDGSGVTLVDFPGHVKLR 69
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
K + ++ +I ++D+
Sbjct: 70 YKLSDYLK--------TRAKFVKGLIFMVDS 92
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 34.9 bits (81), Expect = 0.027
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
KV +VG VGKS L + + V Y+ T DS + + ++ + +DTAG
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEP--TKADSYRKKVVLDGEEVQIDILDTAG 71
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 34.4 bits (80), Expect = 0.028
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTA 238
EY K+ ++G VGKS L + V YD T DS + E + ++ +L +DTA
Sbjct: 3 EY-KLVVLGSGGVGKSALTVQFVQGIFVEKYDP--TIEDSYRKQVEVDCQQCMLEILDTA 59
Query: 239 G 239
G
Sbjct: 60 G 60
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 34.5 bits (80), Expect = 0.028
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 165 YKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL 224
K K++E +++ ++G N GK+T++ GE+ T G +IK+
Sbjct: 10 KKMKQKERE---------LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGF---NIKT- 56
Query: 225 FEYNNKKYILIDTAG 239
E+ K + D G
Sbjct: 57 LEHRGFKLNIWDVGG 71
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 34.5 bits (80), Expect = 0.029
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
+++ ++G GKS+LI+ L + T + K + + +++ + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFL-TGSYQVLEK--TESEQYKKEMLVDGQTHLVLIREEAG 63
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 34.4 bits (80), Expect = 0.029
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
KV +VG VGKS L + + V Y+ T DS + + ++ + +DTAG
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEP--TKADSYRKKVVLDGEEVQIDILDTAG 61
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 34.6 bits (80), Expect = 0.031
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 165 YKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL 224
+ + F KK+ ++ +VG GK+T++ L V T T G +++
Sbjct: 21 FSRIFGKKQM---------RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV--- 68
Query: 225 FEYNNKKYILIDTAG 239
EY N + + D G
Sbjct: 69 -EYKNICFTVWDVGG 82
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 34.5 bits (80), Expect = 0.033
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 172 KEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK 231
+E + K+ +VG VGKS L L+ + V YD T DS + + +
Sbjct: 11 RENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP--TIEDSYRKQVVIDGET 68
Query: 232 YIL--IDTAG 239
+L +DTAG
Sbjct: 69 CLLDILDTAG 78
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 34.0 bits (79), Expect = 0.041
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTA 238
EY K+ +VG VGKS L L+ + V D T DS + + + +L +DTA
Sbjct: 3 EY-KLVVVGAGGVGKSALTIQLIQNHFVDECDP--TIEDSYRKQVVIDGETCLLDILDTA 59
Query: 239 G 239
G
Sbjct: 60 G 60
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 33.7 bits (78), Expect = 0.051
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
K+AI+G +VGKS+L + V +YD T ++ L N ++Y L +DTAG
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDP--TIENTFTKLITVNGQEYHLQLVDTAG 63
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 33.7 bits (78), Expect = 0.054
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTA 238
EY K+ +VG VGKS L L+ + V YD T DS + + + +L +DTA
Sbjct: 4 EY-KLVVVGADGVGKSALTIQLIQNHFVDEYDP--TIEDSYRKQVVIDGETCLLDILDTA 60
Query: 239 G 239
G
Sbjct: 61 G 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 33.7 bits (78), Expect = 0.060
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
KV +VG VGKS L + + V Y+ T DS + + ++ + +DTAG
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEP--TKADSYRKKVVLDGEEVQIDILDTAG 75
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 32.8 bits (76), Expect = 0.082
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
KV ++G VGKS L + + YD T D + E ++ +L +DTAG
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDP--TIEDFYRKEIEVDSSPSVLEILDTAG 60
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 33.3 bits (77), Expect = 0.092
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 20/66 (30%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRV----------ITYDT------PGTTRDSIKSLF--E 226
+A+ G GK++L+ ++GE I++ + PGT +++I +F
Sbjct: 37 LAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENI--IFGVS 94
Query: 227 YNNKKY 232
Y+ +Y
Sbjct: 95 YDEYRY 100
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 33.0 bits (76), Expect = 0.10
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 166 KKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLF 225
+ F +E KV IVG N GK+T++ V T T G+ + I
Sbjct: 9 WRLFNHQEH---------KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI---- 55
Query: 226 EYNNKKYILIDTAG 239
NN ++++ D G
Sbjct: 56 VINNTRFLMWDIGG 69
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 33.3 bits (77), Expect = 0.11
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 20/67 (29%)
Query: 184 KVAIVGKPNVGKSTLINSLLGE-----NRVITYDT-----------PGTTRDSIKSLF-- 225
VA+VG+ GKS+L+++LL E V + + R++I LF
Sbjct: 33 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENI--LFGC 90
Query: 226 EYNNKKY 232
+ Y
Sbjct: 91 QLEEPYY 97
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 32.9 bits (76), Expect = 0.11
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
K+ +VG VGKS L + V YD T DS E +N+ IL +DTAG
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDP--TIEDSYLKHTEIDNQWAILDVLDTAG 75
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 32.9 bits (76), Expect = 0.11
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
K+ +VG VGKS L + V YD T DS + + L +DTAG
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDP--TIEDSYTKICSVDGIPARLDILDTAG 66
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 33.8 bits (77), Expect = 0.12
Identities = 35/233 (15%), Positives = 78/233 (33%), Gaps = 45/233 (19%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTR------------DSIKS-----LFEY 227
++++ + GKSTL +SL+ +I+ G R +IKS E
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 228 NN------------KKYI--LIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLD 273
++ ++ LID+ G + + EV V + ++++D
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLIDSPG--HVDFSSEVTAALRV---------TDGALVVVD 130
Query: 274 AQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333
+ + Q + +V +NK D + + ++ K ++ + ++ +
Sbjct: 131 TIEGVCVQTETVLRQALGERIKPVVVINKVDRAL-LELQVSKEDLYQTFARTVESVNVIV 189
Query: 334 SAIKLNNINSFMESI--NHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIR 384
S + V S +H I + K + K++
Sbjct: 190 STYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMD 242
Score = 31.9 bits (72), Expect = 0.42
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 17/93 (18%)
Query: 33 YPGLTRDRHYGEGYIGKKSFII--IDTGG---FEPEVKKGIMHEMTKQTKQAIIESDIII 87
D + SF+I ID+ G F EV A+ +D +
Sbjct: 79 SEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTA------------ALRVTDGAL 126
Query: 88 FIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK 120
+VD +G+ Q + + V+VINK
Sbjct: 127 VVVDTIEGVCVQTETVLRQALGERIKPVVVINK 159
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 32.6 bits (75), Expect = 0.16
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
KV I+G VGK++L + + YD T ++ + ++ L +DTAG
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDP--TVENTYSKIVTLGKDEFHLHLVDTAG 81
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 32.9 bits (75), Expect = 0.16
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 155 LENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGE 205
+ +L L Y + ++ + +V + G P GKST I
Sbjct: 50 AQVLLQKVLLYHREQEQSNKGKPLAF---RVGLSGPPGAGKSTFIEYFGKM 97
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 32.3 bits (73), Expect = 0.16
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
P ++L G P VGK+TL L + N L R+ +GY + I+D
Sbjct: 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 70
Query: 62 PEVKKGIMHE 71
E+ +
Sbjct: 71 DELDNQMREG 80
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 32.0 bits (73), Expect = 0.23
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 27/133 (20%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDA-----LVANYPGLTRDRHYGEGYIGKKSFIIID 56
+ ++ VG + GK+ LF RL + + + + + G S +ID
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRG------NSLTLID 60
Query: 57 TGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDG--RQGLVEQ------DKLITNFLR 108
G ++ ++ ++F+VD Q V+ LI +
Sbjct: 61 LPG-HESLRFQLLDRFKSSA-------RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMAL 112
Query: 109 KSGQPIVLVINKS 121
K+ +++ NK
Sbjct: 113 KNSPSLLIACNKQ 125
Score = 31.2 bits (71), Expect = 0.41
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
V VG + GK+ L LL T + + K + LID G
Sbjct: 9 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYK-VNNNRGNSLTLIDLPG 63
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 32.0 bits (73), Expect = 0.23
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILI--D 236
+ +IK VG VGK+ L+ S Y T D+ + N L D
Sbjct: 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP--TVFDNFSANVVVNGATVNLGLWD 62
Query: 237 TAG 239
TAG
Sbjct: 63 TAG 65
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 32.3 bits (74), Expect = 0.24
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 184 KVAIVGKPNVGKSTLINSLLGE 205
+A+ G GK++L+ ++GE
Sbjct: 66 LLAVAGSTGAGKTSLLMMIMGE 87
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 31.9 bits (73), Expect = 0.25
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILI-----DTA 238
+V ++G+ VGKSTL N G + + D D+ + + + +I +
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 239 G 239
G
Sbjct: 68 G 68
Score = 27.3 bits (61), Expect = 8.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALV 30
+VL+G VGKSTL N D++
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMD 34
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 32.0 bits (73), Expect = 0.26
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILI--DTA 238
+ IK +VG VGK+ L+ S Y T D+ + + K L DTA
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP--TVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 239 G 239
G
Sbjct: 87 G 87
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 31.8 bits (73), Expect = 0.27
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 165 YKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL 224
++ +V ++G N GK++++ L + V T T G +++
Sbjct: 14 LGLLPADRKI---------RVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETL--- 61
Query: 225 FEYNNKKYILIDTAG 239
+Y N + + D G
Sbjct: 62 -QYKNISFEVWDLGG 75
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 31.6 bits (72), Expect = 0.28
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAG 239
K+ IVG GK+ L+ + Y P T ++ + E + K+ L DTAG
Sbjct: 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-VP-TVFENYIADIEVDGKQVELALWDTAG 82
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 31.7 bits (72), Expect = 0.28
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILID 236
+ +KV +VG GK++L+ +Y T + + K + D
Sbjct: 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTP--TVFERYMVNLQVKGKPVHLHIWD 88
Query: 237 TAG 239
TAG
Sbjct: 89 TAG 91
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 31.3 bits (71), Expect = 0.31
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 19/98 (19%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTR---DRHYGEGYIGKKSFIIIDT 57
MK +++ +G P GKST +A PG D + +
Sbjct: 1 MKKIILTIGCPGSGKSTWARE-------FIAKNPGFYNINRDD------YRQSIMAHEER 47
Query: 58 GGFEPEVKK-GIMHEMTKQTKQAIIES--DIIIFIVDG 92
++ KK GI+ M T ++I+ + I+
Sbjct: 48 DEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISD 85
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 31.6 bits (71), Expect = 0.32
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
M +L +VG + GK+TL R+
Sbjct: 1 MSLILSIVGTSDSGKTTLITRM 22
Score = 28.1 bits (62), Expect = 3.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 185 VAIVGKPNVGKSTLINSLLGE 205
++IVG + GK+TLI ++
Sbjct: 5 LSIVGTSDSGKTTLITRMMPI 25
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 32.0 bits (73), Expect = 0.32
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 216 TTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA- 274
T + ++ ++ ++ +DTAG R + E +K + L+L A
Sbjct: 169 TKEEFQQAKELFSEYDHVFVDTAG-RNFKDPQYIDE----LKETIPFESSIQSFLVLSAT 223
Query: 275 -QQN 277
+
Sbjct: 224 AKYE 227
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 31.7 bits (71), Expect = 0.35
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 187 IVGKPNVGKSTLINSLLGEN 206
+VG+ +GKSTLINSL +
Sbjct: 13 VVGESGLGKSTLINSLFLTD 32
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 31.7 bits (71), Expect = 0.35
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 28/173 (16%)
Query: 187 IVGKPNVGKSTLINSLLG--------ENRVITYDTPGTTRDSIKSLFEYNNKKYIL--ID 236
+VG+ +GKSTLINSL + ++ E K L +D
Sbjct: 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 82
Query: 237 TAGIRRR---NKTFEVIEKF-------------SVIKTLKSILEANVVILLLD-AQQNIS 279
T G F+ I + + + + + +
Sbjct: 83 TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLK 142
Query: 280 AQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332
D+ I+ +++ + K D++ +R+ +K I ++ + +++
Sbjct: 143 PLDVAFMKAIHNK-VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHL 194
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 31.7 bits (72), Expect = 0.40
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 178 HSIEYIKVAIVGKPNVGKSTLINSL 202
+ +++ + G P GKST + +
Sbjct: 52 YCGNTLRLGVTGTPGAGKSTFLEAF 76
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 31.8 bits (72), Expect = 0.45
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 178 HSIEYIKVAIVGKPNVGKSTLINSL 202
S +V I G P VGKST I +L
Sbjct: 75 DSGNAHRVGITGVPGVGKSTAIEAL 99
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 31.0 bits (71), Expect = 0.45
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDS-IKSLFEYNNKKYIL--IDTAG 239
KV +VG+ VGKSTL + G ++ P D+ + + + ++ L D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHE-PENPEDTYERRI-MVDKEEVTLVVYDIWE 81
Score = 27.6 bits (62), Expect = 5.9
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 40/136 (29%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY---IGKKSFI-------- 53
++LVG VGKSTL + + ++
Sbjct: 26 VMLVGESGVGKSTLAGTFG---------------GLQGDSAHEPENPEDTYERRIMVDKE 70
Query: 54 -----IIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLR 108
+ D G + + QT A +I+F V R+ + + +
Sbjct: 71 EVTLVVYDIWE--QGDAGGWLRDHCLQTGDAF----LIVFSVTDRRSFSKVPETLLRLRA 124
Query: 109 KSGQ---PIVLVINKS 121
P++LV NKS
Sbjct: 125 GRPHHDLPVILVGNKS 140
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 31.6 bits (71), Expect = 0.49
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTN--------SRDALVANYPGLTRDRHY 42
MK +++ +G P GKST +RD + Y
Sbjct: 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEY 50
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 30.6 bits (70), Expect = 0.50
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 168 FFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY 227
+E ++ I+G GK+T++ L V T T G +++ Y
Sbjct: 2 SHMTREM---------RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETV----TY 48
Query: 228 NNKKYILIDTAG 239
N K+ + D G
Sbjct: 49 KNLKFQVWDLGG 60
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 30.6 bits (70), Expect = 0.54
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 13/73 (17%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFE 226
K +E ++ ++G N GK+TL+ L E+ T G S+ +
Sbjct: 10 KSAPDQEV---------RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSV----Q 56
Query: 227 YNNKKYILIDTAG 239
K + D G
Sbjct: 57 SQGFKLNVWDIGG 69
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 30.6 bits (70), Expect = 0.56
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDS-IKSLFEYNNKKYIL--IDTAG 239
KV +VG+ VGKSTL + G ++ + D+ + + + ++ L D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHE-MENSEDTYERRI-MVDKEEVTLIVYDIWE 60
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 30.6 bits (68), Expect = 0.57
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
M P+L GK+TL +L
Sbjct: 5 MIPLLAFAAWSGTGKTTLLKKL 26
Score = 27.9 bits (61), Expect = 5.1
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 185 VAIVGKPNVGKSTLINSLLGE 205
+A GK+TL+ L+
Sbjct: 9 LAFAAWSGTGKTTLLKKLIPA 29
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 30.9 bits (70), Expect = 0.60
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 171 KKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK 230
E S+ K+ +VG GK+ L+ + Y T ++ + E + K
Sbjct: 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVP--TVFENYVADIEVDGK 71
Query: 231 KYILI--DTAG 239
+ L DTAG
Sbjct: 72 QVELALWDTAG 82
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 30.7 bits (69), Expect = 0.61
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 1 MKPVLVLV-GRPNVGKST----LFNRLTNSR--------DALVANYPGLTRDRH 41
M+ ++ + G VGK+ L RL S AL PG + D
Sbjct: 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQ 56
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 31.3 bits (71), Expect = 0.64
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 183 IKVAIVGKPNVGKSTLINSL 202
I+V I G P VGKST I++L
Sbjct: 56 IRVGITGVPGVGKSTTIDAL 75
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 30.3 bits (68), Expect = 0.75
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 1 MKPVLVLV-GRPNVGKSTLFNRL 22
P L++V G P GK+TL L
Sbjct: 3 QTPALIIVTGHPATGKTTLSQAL 25
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.4 bits (68), Expect = 0.76
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 183 IKVAIVGKPNVGKSTLINSLL 203
+K+ I G+P VGK+TL+ ++
Sbjct: 1 MKIIITGEPGVGKTTLVKKIV 21
Score = 28.8 bits (64), Expect = 2.0
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
+++ G P VGK+TL ++ + L G + + F II T G +
Sbjct: 3 IIITGEPGVGKTTLVKKIV---ERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKK 56
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 30.2 bits (69), Expect = 0.83
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENR-VITYDTPGTTR 218
+ ++G VG+S + N+LL +N Y P TTR
Sbjct: 22 LVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTR 56
Score = 27.5 bits (62), Expect = 7.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 5 LVLVGRPNVGKSTLFNRL 22
LVL+G VG+S + N L
Sbjct: 22 LVLIGASGVGRSHIKNAL 39
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 30.4 bits (69), Expect = 0.84
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI------GKKSFIII--- 55
+VL+G VGKSTL N D++ ++ + + Y G+ + II+
Sbjct: 40 VVLIGEQGVGKSTLANIFAGVHDSMDSDC-----EVLGEDTYERTLMVDGESATIILLDM 94
Query: 56 -DTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ-- 112
+ G +H+ Q A +I++ + R + +L R
Sbjct: 95 WENKGEN-----EWLHDHCMQVGDAY----LIVYSITDRASFEKASELRIQLRRARQTED 145
Query: 113 -PIVLVINKS 121
PI+LV NKS
Sbjct: 146 IPIILVGNKS 155
Score = 28.8 bits (65), Expect = 2.6
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 184 KVAIVGKPNVGKSTLINSLLG--ENRVITYDTPGTTRDSIKSLFEYNNKKYILI-----D 236
+V ++G+ VGKSTL N G ++ + D+ + + + +I +
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV--LGEDTYERTLMVDGESATIILLDMWE 96
Query: 237 TAG 239
G
Sbjct: 97 NKG 99
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 30.2 bits (69), Expect = 0.91
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 185 VAIVGKPN-VGKSTLINSLLGE 205
+ +VG PN GKSTL+ + G
Sbjct: 29 LHLVG-PNGAGKSTLLARMAGM 49
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 30.6 bits (68), Expect = 0.91
Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 28/175 (16%)
Query: 185 VAIVGKPNVGKSTLINSLLGEN--------RVITYDTPGTTRDSIKSLFEYNNKKYIL-- 234
+ +VG+ +GKSTLINSL + ++ E K L
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 235 IDTAGI---RRRNKTFEVIEKF-------------SVIKTLKSILEANVVILLLD-AQQN 277
+DT G F+ I + + + + +
Sbjct: 100 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 159
Query: 278 ISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332
+ D+ I+ +++ + K D++ +R+ +K I ++ + +++
Sbjct: 160 LKPLDVAFMKAIHNK-VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHL 213
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 30.1 bits (68), Expect = 0.92
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAG 239
K+ +VG GK+ L++ + Y P T ++ + FE + ++ L DT+G
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENY-VP-TVFENYTASFEIDTQRIELSLWDTSG 64
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 29.8 bits (68), Expect = 1.0
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSL-LGENRVITYDTPGTTRDSIKSLF 225
K+E +++ +VG GK+T +N + G+ T G +++
Sbjct: 16 PRGSKEE---------MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF---NMRK-I 62
Query: 226 EYNNKKYILIDTAG 239
N L D G
Sbjct: 63 TKGNVTIKLWDIGG 76
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 29.5 bits (67), Expect = 1.2
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 163 LPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIK 222
+ K + KE ++ I+G GK+T++ L V T T G +++
Sbjct: 8 MFDKLWGSNKEL---------RILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL- 57
Query: 223 SLFEYNNKKYILIDTAG 239
Y N K + D G
Sbjct: 58 ---SYKNLKLNVWDLGG 71
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 29.7 bits (67), Expect = 1.2
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILI--D 236
S + IK +VG VGK+ L+ S + T D+ + + K L D
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYT--TNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 59
Query: 237 TAG 239
TAG
Sbjct: 60 TAG 62
Score = 29.3 bits (66), Expect = 1.7
Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 37/192 (19%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEP 62
V+VG VGK+ L T +A Y D + + K + + DT G E
Sbjct: 8 CVVVGDGAVGKTCLLISYT--TNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE- 64
Query: 63 EVKKGIMHEMTKQTKQAIIESDIII--FIVDGRQGLVE-QDKLITNFLRKS-GQPIVLVI 118
+ + + ++D+ + F + + K PI+LV
Sbjct: 65 --------DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 116
Query: 119 NKS---ENINSSISLD-------FYELG------IGNPHII--SALYGNGIKNFLENILT 160
K ++ ++ L Y G IG + SAL G+K + +
Sbjct: 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176
Query: 161 IELPYKKFFKKK 172
L KK
Sbjct: 177 AVLCPPP--VKK 186
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 29.5 bits (67), Expect = 1.3
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
+++ +VG GK+T++ L V T T G +++ EY N + + D G
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV----EYKNISFTVWDVGG 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 30.4 bits (68), Expect = 1.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 184 KVAIVGKPNVGKSTLINSLLGE 205
++A++G GKSTLIN L GE
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGE 722
Score = 29.2 bits (65), Expect = 3.3
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 184 KVAIVGKPNVGKSTLINSLLGE 205
+ I G GKSTL+ ++
Sbjct: 463 RYGICGPNGCGKSTLMRAIANG 484
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 29.8 bits (67), Expect = 1.4
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILI--DTAG 239
K+ +VG GK+ ++ L + TY T ++ + E ++ L DT+G
Sbjct: 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVP--TVFENYTACLETEEQRVELSLWDTSG 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 29.6 bits (67), Expect = 1.4
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 21/95 (22%)
Query: 151 IKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVIT 210
I + ++L KK K+ +G N GK+TL++ L +
Sbjct: 8 IYSGFSSVLQ-----FLGLYKKT---------GKLVFLGLDNAGKTTLLHMLKDDRLGQH 53
Query: 211 YDTPGTTRDSIKSLFEYNNKKYILIDTAG---IRR 242
T T + + + D G RR
Sbjct: 54 VPTLHPTSEEL----TIAGMTFTTFDLGGHIQARR 84
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 29.8 bits (68), Expect = 1.4
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Query: 185 VAIVGKPN-VGKSTLINSLLG 204
+A++G N GKSTL++ LLG
Sbjct: 34 LAVLG-QNGCGKSTLLDLLLG 53
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 29.2 bits (66), Expect = 1.7
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 175 TNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL 234
+++ ++IK VG VGK+ ++ Y P T D+ + + + L
Sbjct: 2 SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-P-TVFDNFSANVAVDGQIVNL 59
Query: 235 --IDTAG 239
DTAG
Sbjct: 60 GLWDTAG 66
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 29.3 bits (66), Expect = 1.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
L++VG GK+TL +L ++
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTK 26
Score = 28.5 bits (64), Expect = 3.3
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKS-LFEYNNKKYILI-----D 236
+K+ IVG GK+TL+ L+ + T +K + +K+ + D
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 237 TAG 239
AG
Sbjct: 63 FAG 65
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 30.0 bits (67), Expect = 1.7
Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 29/178 (16%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
IKV ++G GK++L+ L+GE T+D + + K+ I
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGE----TFDPKESQTHGL----NVVTKQAPNIKGLENDD 93
Query: 243 RNKTFEVI-------EKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE---- 291
K E + ++V +LLLD++ D N ++
Sbjct: 94 ELKECLFHFWDFGGQEIMHASHQF-FMTRSSVYMLLLDSR-----TDSNKHYWLRHIEKY 147
Query: 292 SGRSLIVCV-NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
G+S ++ V NK D + I + I ++ + F+ IS + + S +S+
Sbjct: 148 GGKSPVIVVMNKID--ENPSYNIEQKKINERFPAIE-NRFHRISCKNGDGVESIAKSL 202
Score = 27.6 bits (61), Expect = 8.0
Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 31/172 (18%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-----------DALVANYPGLTRDRHYGEGYIGKKSFI 53
+ L+G GK++L +L + + P + + E F
Sbjct: 44 VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL--FH 101
Query: 54 IIDTGGFEPEVKKGIMHEMTKQTKQAII-ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ 112
D GG E+ + Q + S + + ++D R + L
Sbjct: 102 FWDFGG----------QEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKS 151
Query: 113 PIVLVINK-----SENINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENI 158
P+++V+NK S NI + + I N IS G+G+++ +++
Sbjct: 152 PVIVVMNKIDENPSYNIEQKKINERFP-AIENRFHRISCKNGDGVESIAKSL 202
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 30.0 bits (68), Expect = 1.7
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 155 LENILTIELPYKKFFKKKEFTNIHSIEYIK---VAIVGKPN-VGKSTLINSLLGE 205
+E +E P + E K + IVG PN +GK+T + L G
Sbjct: 352 VERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVG-PNGIGKTTFVKMLAGV 405
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.7 bits (66), Expect = 1.8
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 187 IVGKPNVGKSTLINSLLGENRVITYDT---PGTTRDSIKSLFEYNNKKYIL--IDTAGI 240
VG+ +GKSTL+++L T PG S + +N + L + T G
Sbjct: 47 CVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105
Score = 28.6 bits (63), Expect = 4.4
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYP-----GLTRDRHYGEGYIGKKSFIIIDTGG 59
++ VG +GKSTL + L N++ L + + + + I+ T G
Sbjct: 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104
Query: 60 FEPEV 64
F ++
Sbjct: 105 FGDQI 109
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 29.0 bits (66), Expect = 1.8
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 187 IVGKPNVGKSTLINSLLGENR-VITYDTPGTTR 218
++G VG+ + N+L+ ++ Y P TTR
Sbjct: 10 LLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTR 42
Score = 28.2 bits (64), Expect = 3.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
M+ LVL+G VG+ + N L
Sbjct: 4 MRKTLVLLGAHGVGRRHIKNTL 25
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 29.3 bits (66), Expect = 1.9
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAG 239
+K +VG VGK++L+ S N T P T D+ ++ + + L DTAG
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYT-TNGYPTEYIP-TAFDNFSAVVSVDGRPVRLQLCDTAG 77
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 29.7 bits (66), Expect = 1.9
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 17/104 (16%)
Query: 2 KPVLVLVGRPNVGKSTLFNRL---------------TNSRDALVANYPGLTRDRHYGEGY 46
+ ++LVG P GKST+ L N + P +
Sbjct: 24 RVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQ 83
Query: 47 IGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIV 90
K + +I + G F+ V+ + + K ++ +V
Sbjct: 84 PNKVAEMIENQGLFKDHVED-VNFQPVKY-SALTSNNEECTAVV 125
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 29.8 bits (68), Expect = 1.9
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 17/54 (31%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENR-------VITYDTPGT-----TRDSIKSLF 225
KVA+VG GK+T++N LL R I D G R S++S
Sbjct: 383 KVALVGPTGSGKTTIVN-LL--MRFYDVDRGQILVD--GIDIRKIKRSSLRSSI 431
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 28.9 bits (64), Expect = 2.0
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 185 VAIVGKPNVGKSTLINSLLGE 205
+VG + GK+TL+ +
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAA 27
Score = 28.1 bits (62), Expect = 4.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 3 PVLVLVGRPNVGKSTLFNRL 22
V +VG + GK+TL +
Sbjct: 5 NVWQVVGYKHSGKTTLMEKW 24
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 28.8 bits (65), Expect = 2.1
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 169 FKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN 228
+E KV IVG N GK+T++ V T T G+ + I N
Sbjct: 17 RGSQEH---------KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI----VIN 63
Query: 229 NKKYILIDTAG 239
N ++++ D G
Sbjct: 64 NTRFLMWDIGG 74
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.9 bits (64), Expect = 2.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENR 207
V + G P VGK+TLI+ +
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLK 26
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 28.9 bits (65), Expect = 2.5
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILI--DTAG 239
K+ +VG GK+ L++ + Y P T ++ + FE + ++ L DT+G
Sbjct: 29 CKIVVVGDSQCGKTALLHVFAKDCFPENY-VP-TVFENYTASFEIDTQRIELSLWDTSG 85
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 29.3 bits (65), Expect = 2.8
Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 3/134 (2%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
P+ +++G GKS++ N + + YI K F++
Sbjct: 30 APITLVLGLRRTGKSSIIKIGINELNLPYIYL---DLRKFEERNYISYKDFLLELQKEIN 86
Query: 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS 121
VK+ + Q I+ I R+ + L+ +F + S +++V++++
Sbjct: 87 KLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEA 146
Query: 122 ENINSSISLDFYEL 135
+ + ++
Sbjct: 147 QELVKLRGVNLLPA 160
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 28.6 bits (64), Expect = 2.8
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 38/146 (26%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENR------VITYDTPGTT-------RDSIKSLFEYNN 229
K+ G GK+T + + + +++ T I +
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGE-VKGFK 73
Query: 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTL-KSILE-ANVVILLLDAQQNISAQDI---- 283
++ L G K IL + ++ + D+ N +
Sbjct: 74 TRFHLYTVPGQVF-------------YNASRKLILRGVDGIVFVADSAPNRLRANAESMR 120
Query: 284 NIANFIYESGRSL-----IVCVNKWD 304
N+ + E G +L ++ VNK D
Sbjct: 121 NMRENLAEYGLTLDDVPIVIQVNKRD 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 28.3 bits (64), Expect = 3.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 1 MKPVLVLVGRPNVGKST 17
M P VLVG P GKST
Sbjct: 1 MAPKAVLVGLPGSGKST 17
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.2
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 315 KNNIKKKLNFL--SFAMFNFISAIKLNNINSFME 346
K +KK L S ++ SA L I + ME
Sbjct: 19 KQALKK----LQASLKLYADDSAPAL-AIKATME 47
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 28.8 bits (63), Expect = 3.5
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFE 226
V++ G GKS L++ +L + + F
Sbjct: 70 VSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS 111
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 28.6 bits (64), Expect = 3.6
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 362 SRITRALISAIKNHP-PCRKKLIRPKLRYAHQGGKNPPIIVIHG 404
+ + A N P P +++ + GG P +I +HG
Sbjct: 46 ALLAENAEQAGVNGPLPEVERVQAGAISALRWGGSAPRVIFLHG 89
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.1 bits (62), Expect = 3.7
Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 8/133 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
V + G P VG +T + R + + S+ +FE ++ ++ D +R+
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV--MFEVAKEENLVSDRDQMRKM 62
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSL----IVC 299
+ + + + + + + + V +D +S + L I+
Sbjct: 63 DPETQKRIQKMAGRKIAEMAKESPVA--VDTHSTVSTPKGYLPGLPSWVLNELNPDLIIV 120
Query: 300 VNKWDSIIHNQRK 312
V I +R
Sbjct: 121 VETTGDEILMRRM 133
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 28.9 bits (64), Expect = 3.7
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 185 VAIVGKPNVGKSTLINSLLG--ENRVITYDTPGTTRDSIKSLFEYN---NKKYILIDTA- 238
G + GK+TL +LL + + + P + FE ++ ++ +
Sbjct: 172 WLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD-----RLNFELGVAIDQFLVVFEDVK 226
Query: 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVI 269
G ++ + + + L+ L+ +V +
Sbjct: 227 GTGGESRDLPSGQGINNLDNLRDYLDGSVKV 257
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 28.5 bits (63), Expect = 4.0
Identities = 17/136 (12%), Positives = 50/136 (36%), Gaps = 12/136 (8%)
Query: 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
+++L+G GKS++ + ++ L Y T + E + +++ G
Sbjct: 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSL-EHFSTLIDLAVMELPGQLNY 59
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVE-----QDKLITNFLRKSGQPIVLVI 118
+ E ++ A +++++D + + + + I ++I
Sbjct: 60 FEPSYDSERLFKSVGA------LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLI 113
Query: 119 NKSENINSSISLDFYE 134
+K + ++ +D
Sbjct: 114 HKVDGLSEDFKVDAQR 129
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 28.2 bits (63), Expect = 4.0
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTA 238
+K +VG VGK+ L+ S + P T D K+Y+L DTA
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYA-NDAFPEEYVP-TVFDHYAVSVTVGGKQYLLGLYDTA 74
Query: 239 G 239
G
Sbjct: 75 G 75
Score = 27.1 bits (60), Expect = 8.5
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 21/125 (16%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFI--IIDTGGFEP 62
V+VG VGK+ L N DA Y D + +G K ++ + DT G E
Sbjct: 21 CVVVGDGAVGKTCLLMSYAN--DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE- 77
Query: 63 EVKKGIMHEMTKQTKQAIIESDIII--FIVDGRQGLVEQDKL----ITNFLRKSGQPIVL 116
+ + + +D+ + F V + + + P +L
Sbjct: 78 --------DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNV--PFLL 127
Query: 117 VINKS 121
+ +
Sbjct: 128 IGTQI 132
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 28.5 bits (64), Expect = 4.4
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 176 NIHSIEYIKVAIVGKPNVGKSTLINSLLG 204
+I + +V ++G+ GKSTL+++ L
Sbjct: 43 SISPGQ--RVGLLGRTGSGKSTLLSAFLR 69
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 28.5 bits (64), Expect = 4.4
Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 30/173 (17%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
+I V ++G + GKST L+ + I T L + + K ++D
Sbjct: 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKA 65
Query: 241 -RRRNKTFEV-IEKFSVIKTLKSILEA-----------------NVVILLLDAQQNISAQ 281
R R T ++ + KF K ++++A + IL++
Sbjct: 66 ERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEA 125
Query: 282 DINIANFIYESG--------RSLIVCVNKWDSIIHNQRKIIKNNIKKKL-NFL 325
I+ E R LIV VNK DS+ ++ + I K+ NF+
Sbjct: 126 GISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF--QEIVKETSNFI 176
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.1 bits (62), Expect = 4.5
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 4 VLVLVGRPNVGKSTL 18
V LV GKS L
Sbjct: 32 VGALVSPGGAGKSML 46
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 27.9 bits (63), Expect = 4.7
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 151 IKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVIT 210
I + ++L K K+ +G N GK+TL++ L +
Sbjct: 6 IFGWFRDVLA-----SLGLWNKH---------GKLLFLGLDNAGKTTLLHMLKNDRLATL 51
Query: 211 YDTPGTTRDSIKSLFEYNNKKYILIDTAG---IRR 242
T T + + N K+ D G RR
Sbjct: 52 QPTWHPTSEEL----AIGNIKFTTFDLGGHIQARR 82
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 28.1 bits (63), Expect = 4.8
Identities = 3/19 (15%), Positives = 11/19 (57%)
Query: 386 KLRYAHQGGKNPPIIVIHG 404
++ + G + ++++HG
Sbjct: 26 RIHFNDCGQGDETVVLLHG 44
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 28.1 bits (62), Expect = 5.1
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFE-----YNNKKYILIDTAG 239
++G VGKS+L+ + L E I D + E +
Sbjct: 34 TLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPFQKFQS 93
Query: 240 IRRRNKTFEVIEKFSVIKTLKSILEA 265
+ + + + +L+ +
Sbjct: 94 KFKISLNLKFLTLEPRKLSLREVFRE 119
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 27.7 bits (62), Expect = 5.2
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTA 238
+ +K+ +VG VGK+ L+ + + + T P T ++ + +Y N+++IL DTA
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFS-KGEIPTAYVP-TVFENFSHVMKYKNEEFILHLWDTA 79
Query: 239 G 239
G
Sbjct: 80 G 80
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 27.8 bits (61), Expect = 5.3
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDAL-VANYPGLTRDRHYGEGYIGKKSFIIID 56
+++ G P GK+++ + D L ++ H+ Y + II+
Sbjct: 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIE 65
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 28.0 bits (63), Expect = 5.6
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 386 KLRYAHQGGKNPPIIVIHG 404
+L +A + P ++++HG
Sbjct: 6 QLHFAKPTARTPLVVLVHG 24
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 28.2 bits (62), Expect = 5.9
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 187 IVGKPNVGKSTLINSLLGENRVITYDT-------PGTTRDSIKSLFEYNNKKYIL--IDT 237
+VG+ +GKSTLINSL + + K L + + +L +DT
Sbjct: 36 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDT 95
Query: 238 AGI 240
G
Sbjct: 96 PGF 98
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.5 bits (62), Expect = 6.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 193 VGKSTLINSLLGENRVITYDTPGTTR 218
VGKST++ L + + TTR
Sbjct: 31 VGKSTVVRCLRERIPNLHFSVSATTR 56
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 27.9 bits (63), Expect = 6.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 184 KVAIVGKPNVGKSTLIN 200
VA+VG+ GKST+ +
Sbjct: 371 TVALVGRSGSGKSTIAS 387
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 27.9 bits (63), Expect = 6.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 184 KVAIVGKPNVGKSTLIN 200
VA+VG+ GKST+ N
Sbjct: 371 TVALVGRSGSGKSTIAN 387
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 27.7 bits (62), Expect = 6.5
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 386 KLRYAHQGGKNPPIIVIHG 404
+ RY + GK P+I+IHG
Sbjct: 27 ETRY-LEAGKGQPVILIHG 44
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 27.6 bits (62), Expect = 6.9
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 230 KKYILIDTAGIRRRNKTFEVIEKF--SVIKTLKSILEANVVIL-----LLDAQQNISAQ 281
+ +++ + + I L E + I+ +LDA IS +
Sbjct: 150 LRLESSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIR 208
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 28.1 bits (63), Expect = 7.0
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 159 LTIELPYKKFFKKKEFTNIHSIEYIK---VAIVGKPN-VGKSTLINSLLGENR 207
P K + N+ E+ + ++G N GK+TLI L G +
Sbjct: 352 RAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMG-ENGTGKTTLIKLLAGALK 403
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 27.7 bits (61), Expect = 7.1
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 48 GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFL 107
K + D G E + ++ M + ++ D+ + +Q K ++N
Sbjct: 135 EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR---GMNRNFDDQLKFVSNLY 191
Query: 108 R---KSGQPIVLVINKS 121
K+ +PIV+V+ K
Sbjct: 192 NQLAKTKKPIVVVLTKC 208
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 27.2 bits (61), Expect = 7.2
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 169 FKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN 228
KE V +G N GK+T+IN L N P T SI+ F+ +
Sbjct: 17 RGSKEV---------HVLCLGLDNSGKTTIINKLKPSNAQSQNILP-TIGFSIEK-FKSS 65
Query: 229 NKKYILIDTAG 239
+ + + D +G
Sbjct: 66 SLSFTVFDMSG 76
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 27.8 bits (62), Expect = 7.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 386 KLRYAHQGGKNPPIIVIHG 404
+ + A N PI+++HG
Sbjct: 6 RAQTAQNQHNNSPIVLVHG 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 27.6 bits (62), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 185 VAIVGKPN-VGKSTLINSLLGEN 206
+ G N GK+TL+N L
Sbjct: 50 WILYG-LNGAGKTTLLNILNAYE 71
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 27.3 bits (61), Expect = 8.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANY 33
+ +VG VGKS L + T+ + +Y
Sbjct: 23 VAVVGEATVGKSALISMFTSKGSKFLKDY 51
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 27.0 bits (60), Expect = 9.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 185 VAIVGKPNVGKSTLINSL 202
VA+ G P GKSTL N L
Sbjct: 25 VALSGAPGSGKSTLSNPL 42
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 27.5 bits (62), Expect = 9.2
Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 24/141 (17%)
Query: 70 HEMTKQTKQAI---IESDIIIFIVDGRQGLVEQDKLITNFLRKSG--QPIV-----LVIN 119
H +T K+ + I GR ++ + G ++ V +
Sbjct: 37 HFLTPYAKETLKLLTARGINFVFATGR-HYID----VGQIRDNLGIRSYMITSNGARVHD 91
Query: 120 K------SENINSSISLDFYELGIGNPHIISALYGNG---IKNFLENILTIELPYKKFFK 170
+ N++ I+ D +E+ +P I++ +Y + + +K
Sbjct: 92 SDGQQIFAHNLDRDIAADLFEIVRNDPKIVTNVYREDEWYMNRHRPEEMRFFKEAVFNYK 151
Query: 171 KKEFTNIHSIEYIKVAIVGKP 191
E + KV +
Sbjct: 152 LYEPGELDPQGISKVFFTCED 172
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 27.5 bits (62), Expect = 9.5
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 184 KVAIVGKPNVGKSTLIN 200
VA VG GKSTLIN
Sbjct: 369 TVAFVGMSGGGKSTLIN 385
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 27.5 bits (60), Expect = 9.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTN 24
P +V+VG GK++L L +
Sbjct: 139 PRVVIVGGSQTGKTSLSRTLCS 160
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 26.8 bits (59), Expect = 10.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1 MKPVLVLVGRPNVGKSTL 18
MK + ++ G VGKST
Sbjct: 1 MKKLYIITGPAGVGKSTT 18
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.393
Gapped
Lambda K H
0.267 0.0453 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,312,782
Number of extensions: 391533
Number of successful extensions: 1845
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1705
Number of HSP's successfully gapped: 327
Length of query: 419
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 323
Effective length of database: 4,021,377
Effective search space: 1298904771
Effective search space used: 1298904771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)