RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17089
(419 letters)
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 107 bits (269), Expect = 2e-27
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI 128
M + ++ + + DI+ +VD R + ++ +I + L+ +P ++++NK++ ++++
Sbjct: 2 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN--KPRIMLLNKADKADAAV 59
Query: 129 ---SLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKV 185
+ +E I+++ G G+ + I + K I+
Sbjct: 60 TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA----IRA 115
Query: 186 AIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
I+G PNVGKSTLIN L +N T D PG T + K+ L+DT GI
Sbjct: 116 LIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ---WVKVGKELELLDTPGILWPK 171
Score = 36.7 bits (84), Expect = 0.004
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
++G PNVGKSTL NRL A + PG+T + + K ++DT G
Sbjct: 117 IIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW---VKVGKELELLDTPGI 167
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 95.9 bits (237), Expect = 7e-24
Identities = 65/175 (37%), Positives = 105/175 (60%), Gaps = 3/175 (1%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
IKVAIVG+PNVGKSTL N++L + R + PGTTRD + + +KY+ +DTAG+RR
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68
Query: 243 RNKTFEVIEKFS-VIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
+++ + + + SI +A+VV+++LDA Q I+ QD +A + GR+ +V N
Sbjct: 69 KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128
Query: 302 KWDSIIHNQ--RKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDS 354
KWD ++H + ++KL F+ ++ F SA K NI+ ++++N Y S
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 183
Score = 79.0 bits (193), Expect = 7e-18
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65
+VGRPNVGKSTLFN + N ALV+ PG TRD E +I + ++ +DT G + +
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 71
Query: 66 KGI---MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE 122
+ +I ++D+++ ++D QG+ QD+ + + + G+ V+V NK +
Sbjct: 72 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD 131
Query: 123 NINSS----------ISLDFYELGIGNPHIISALYGNGIKNFLENILTI 161
+ Y + SA G I ++ +
Sbjct: 132 LVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 180
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 92.7 bits (229), Expect = 5e-23
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ IVGKPNVGKSTL+N LL E+R I D PGTTRD I + ++DTAG+
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV-- 58
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
R++T +++E+ + +TL+ I +A++V+ +LDA + +D I I +++ K
Sbjct: 59 RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVIN--K 116
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D + + IKN + + + ISA+K + ESI
Sbjct: 117 VDVVEKINEEEIKNKLGTDRHMV------KISALKGEGLEKLEESI 156
Score = 92.3 bits (228), Expect = 6e-23
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V+VG+PNVGKSTL NRL N A+V + PG TRD E I F I+DT G E
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ ++T Q I ++DI++F++D L E+D+ I ++ +V+
Sbjct: 63 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK 122
Query: 125 NSSISLDFYELGIGNPHI-ISALYGNGIKNFLENIL 159
+ + +LG + ISAL G G++ E+I
Sbjct: 123 INEEEI-KNKLGTDRHMVKISALKGEGLEKLEESIY 157
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 91.2 bits (225), Expect = 5e-22
Identities = 30/212 (14%), Positives = 83/212 (39%), Gaps = 13/212 (6%)
Query: 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY-IGKKSFIIIDTGGFEP 62
++V+VG P GK+ + +LT + + ++ + K +
Sbjct: 4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGL 63
Query: 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE 122
+++K ++ + E + + D E+ +I NF ++G V +
Sbjct: 64 KIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 123
Query: 123 NINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEY 182
+ I+ + ++ +G+P ++ ++F+ I E + ++ +
Sbjct: 124 DPE-VIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYE---------NSYESLDEEQD 173
Query: 183 IKVAIVGKPNVGKSTLINSLLG--ENRVITYD 212
++ + +VG+S ++N + ++R++ Y
Sbjct: 174 RDLSYIKIMDVGQSYVVNRVADHIQSRIVYYL 205
Score = 37.6 bits (86), Expect = 0.001
Identities = 17/166 (10%), Positives = 37/166 (22%), Gaps = 10/166 (6%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ +VG P GK+ + L I T + ++ T
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG---------QYRRDMVKTYKSFEFF 55
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
+ + L L + N + N +
Sbjct: 56 LPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFG-EQNGYK 114
Query: 305 SIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINH 350
+ + I + + ++++ FM I
Sbjct: 115 TFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIEC 160
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 87.5 bits (215), Expect = 6e-21
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65
+VGRPNVGKSTL N+L + ++ + TR R G G I +DT G E K
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68
Query: 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK----- 120
+ I M K +I + +++IF+V+G + + + ++ I+ V
Sbjct: 69 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQE 128
Query: 121 SENINSSISLDFYELGIGNPHIISALYGNGIKNFLENIL 159
++ + ++ + ISA G + +
Sbjct: 129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 167
Score = 78.6 bits (192), Expect = 8e-18
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+AIVG+PNVGKSTL+N LLG+ IT TTR I + + I +DT G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME- 66
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
I + SI + +VI +++ + D + N + E +I+ VNK D
Sbjct: 67 -EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP-DDEMVLNKLREGKAPVILAVNKVD 124
Query: 305 SIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
++ + +++ + ++F ISA N+++ +
Sbjct: 125 --NVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 166
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 86.6 bits (213), Expect = 1e-20
Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
V +VG PN GKS+L+ ++ + I T ++ + +++ L D GI
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINI-----ANFIYESGRSLIVC 299
+ + ++ L+ I V++ +LDA + A R +V
Sbjct: 64 SEGKGL----GLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119
Query: 300 VNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355
+NK D + K + + + ++ +SA+ + + E+++ + S+
Sbjct: 120 LNKVDLLEEEAVKALADALARE-----GLAVLPVSALTGAGLPALKEALHALVRST 170
Score = 71.6 bits (174), Expect = 2e-15
Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 10/163 (6%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66
LVG PN GKS+L +T + + ++ F + D G +
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65
Query: 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLIT--------NFLRKSGQPIVLVI 118
G + + + I + ++++++D ++ + + LR+ + +
Sbjct: 66 G--KGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123
Query: 119 NKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTI 161
+ E D +SAL G G+ E + +
Sbjct: 124 DLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHAL 166
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 89.1 bits (220), Expect = 5e-20
Identities = 29/143 (20%), Positives = 45/143 (31%), Gaps = 13/143 (9%)
Query: 183 IKVAIVGKPNVGKSTLINSLLG----ENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
+ VA+ G+ GKS+ IN+L G E T + N + D
Sbjct: 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLP 115
Query: 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIV 298
GI F L+ + ++ + DI+IA I +
Sbjct: 116 GIGST--------NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF 167
Query: 299 CVNKWDSIIHNQRKIIKNNIKKK 321
K DS I N+ K+
Sbjct: 168 VRTKVDSDITNEADGEPQTFDKE 190
Score = 67.1 bits (163), Expect = 8e-13
Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 11/124 (8%)
Query: 5 LVLVGRPNVGKSTLFNRLTN----SRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+ + G GKS+ N L A +T +RH + + + + D G
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGI 117
Query: 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK 120
T K E D I I R + D I + + V K
Sbjct: 118 GST----NFPPDTYLEKMKFYEYDFFIIISATR--FKKNDIDIAKAISMMKKEFYFVRTK 171
Query: 121 SENI 124
++
Sbjct: 172 VDSD 175
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 80.6 bits (197), Expect = 1e-18
Identities = 58/157 (36%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65
++VGRPNVGKSTLFN+L + A+V + G+TRD K+F ++DT G +
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63
Query: 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN 125
I +M + T I E+D+++F+VDG++G+ ++D+ + +FLRKS +LV NK+EN+
Sbjct: 64 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 123
Query: 126 SS---ISLDFYELGIGNPHIISALYGNGIKNFLENIL 159
+ + Y LG G P +SA + + LE I+
Sbjct: 124 EFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETII 160
Score = 70.6 bits (171), Expect = 4e-15
Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
V IVG+PNVGKSTL N L+ + + I D G TRD ++ E+ K + L+DT +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT--CGVFD 60
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
++I + TL I EA++V+ ++D ++ I+ +D ++A+F+ +S I+ NK +
Sbjct: 61 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 120
Query: 305 SIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
++ + + +K +L L F +SA N+++ +E+I
Sbjct: 121 NL-----REFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETI 159
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 77.8 bits (190), Expect = 2e-17
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 23/176 (13%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPE 63
+ GR NVGKSTL RLT + PG+TR E K G E
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGR-----------QGLVEQDKLITNFLRKSGQ 112
V++ I E+ + D+ + +VDG+ +G + D FLR+
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 113 PIVLVINKSENI-NSSISLDFYELGIGNPHI--------ISALYGNGIKNFLENIL 159
P ++ +NK + I N ++F P ISA +G+ I+ I
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 178
Score = 72.4 bits (176), Expect = 1e-15
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 13/176 (7%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ G+ NVGKSTLI L G+ +V PG TR I+ ++ + + +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGK-KVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDA-----------QQNISAQDINIANFIYESG 293
+ E I+ V + +V +L++D ++ D+ F+ E
Sbjct: 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121
Query: 294 RSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSF-AMFNFISAIKLNNINSFMESI 348
IV VNK D I + Q I K ++ +F ISA +NI I
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 177
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 75.4 bits (184), Expect = 1e-16
Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 10/169 (5%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
V +VG P+VGKSTL++ + I T ++ + + + +++ D G+
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
+ + L+ I V++ ++D + +D S
Sbjct: 64 HQGVGLGH----QFLRHIERTRVIVHVIDM-SGLEGRDPYDDYLTINQELSEYNLRLTER 118
Query: 305 SIIHNQRKIIKNNIKKKLNFLSFAMFN-----FISAIKLNNINSFMESI 348
I K+ + L + + ISA+ + + +
Sbjct: 119 PQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEV 167
Score = 75.4 bits (184), Expect = 1e-16
Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 18/182 (9%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEG-YIGKKSFIIIDTGGFEPEVK 65
LVG P+VGKSTL + +++++ +A+Y T + G +SF++ D G
Sbjct: 6 LVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 64
Query: 66 KGIMHEMTKQTKQAIIESDIIIFIV---------DGRQGLVEQDKLITNFLRKSGQPIVL 116
+G+ + Q + I + +I+ ++ L +L LR + +P ++
Sbjct: 65 QGV--GLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122
Query: 117 VINKSENINSSISLD--FYELGIGNPHI-ISALYGNGIKNFLENILTI--ELPYKKFFKK 171
V NK + ++ +L+ +L P ISA+ G++ L + P + +
Sbjct: 123 VANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPLYDE 182
Query: 172 KE 173
+E
Sbjct: 183 EE 184
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 72.5 bits (176), Expect = 1e-15
Identities = 27/173 (15%), Positives = 71/173 (41%), Gaps = 1/173 (0%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
I+VA G+ N GKS+ +N+L + + I + K+ + + G
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 74
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
+ + + ++ + L+ +++L+D + + D + + +S +++V +
Sbjct: 75 AEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134
Query: 301 NKWDSIIHNQRKIIKNNIKKKL-NFLSFAMFNFISAIKLNNINSFMESINHVY 352
K D + RK N +++ + F S++K ++ + ++ +
Sbjct: 135 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 187
Score = 57.5 bits (137), Expect = 2e-10
Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDT--GG 59
+ GR N GKS+ N LTN + + K + +
Sbjct: 16 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYA 75
Query: 60 FEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
PE K + + ++ ++D R L + D+ + + S +++++
Sbjct: 76 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLT 135
Query: 120 KSENINSSISLDFYE---------LGIGNPHIISALYGNGIKNFLENI 158
K++ + S G S+L G+ + +
Sbjct: 136 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 70.6 bits (172), Expect = 2e-14
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 4/149 (2%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+ + ++GK VGKS+ +NS++GE V + +IDT G+
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDA----QQNISAQDINIANFIYESGRSLIV 298
++ L ++ + + LDA + +F IV
Sbjct: 93 GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIV 152
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSF 327
+ + + K+ L
Sbjct: 153 ALTHAQFSPPDGLPYDEFFSKRSEALLQV 181
Score = 62.9 bits (152), Expect = 7e-12
Identities = 27/219 (12%), Positives = 64/219 (29%), Gaps = 18/219 (8%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG-FEPE 63
++++G+ VGKS+ N + R ++ + + IIDT G E
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 94
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDK-----LITNFLRKSGQPIVLVI 118
+ + K ++ + DK + +F + ++ +
Sbjct: 95 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVAL 154
Query: 119 NKSENI-NSSISLDFYELGIGN--PHIISALYGNGIKNFLENILTIELPYKKFFKKKEFT 175
++ + D + ++ + +I + + K +
Sbjct: 155 THAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKND-- 212
Query: 176 NIHSIEYIKVAIVGKPNVGK--STLINSLLGENRVITYD 212
KV G + T+ L ++ I D
Sbjct: 213 -----SDEKVLPNGIAWIPHLVQTITEVALNKSESIFVD 246
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 67.1 bits (162), Expect = 6e-14
Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+KV I G+PN GKS+L+N+L G I D GTTRD ++ + +IDTAG+R
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ E I + ++ ++ A+ + + V NK
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D ++ ++ +SA ++ +
Sbjct: 122 ADITGE----------TLGMSEVNGHALIRLSARTGEGVDVLRNHL 157
Score = 67.1 bits (162), Expect = 7e-14
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 2/155 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V+ GRPN GKS+L N L A+V + G TRD +I IIDT G
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + ++ Q I ++D ++F+VDG I + +
Sbjct: 64 DE-VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKA 122
Query: 125 NSSI-SLDFYELGIGNPHIISALYGNGIKNFLENI 158
+ + +L E+ +SA G G+ ++
Sbjct: 123 DITGETLGMSEVNGHALIRLSARTGEGVDVLRNHL 157
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 67.1 bits (162), Expect = 1e-13
Identities = 30/193 (15%), Positives = 68/193 (35%), Gaps = 15/193 (7%)
Query: 176 NIHSIEYIK---------------VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDS 220
+ E + +A+ G+ NVGKS+ INSL+ + + +
Sbjct: 2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61
Query: 221 IKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISA 280
+ + ++ + G + +K+ + + + E V+ ++D + S
Sbjct: 62 LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121
Query: 281 QDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340
D+ + F+ G +IV K D I + +++ LN S+
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKG 181
Query: 341 INSFMESINHVYD 353
+ +I + +
Sbjct: 182 KDEAWGAIKKMIN 194
Score = 54.8 bits (130), Expect = 2e-09
Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 10/169 (5%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTN-SRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG-F 60
P + L GR NVGKS+ N L N A ++ PG T+ ++ + G
Sbjct: 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83
Query: 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK 120
+ ++ M + E ++ IVD R D + FL+ G P++++ K
Sbjct: 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATK 143
Query: 121 SENINSS--------ISLDFYELGIGNPHIISALYGNGIKNFLENILTI 161
++ I + + S+ G I +
Sbjct: 144 ADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM 192
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 65.9 bits (159), Expect = 2e-13
Identities = 39/172 (22%), Positives = 79/172 (45%), Gaps = 7/172 (4%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEP 62
+ +VG+PNVGKSTL N L + A ++ P TR R G G++ + +DT G
Sbjct: 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 65
Query: 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSG-----QPIVLV 117
+ + M ++ +A+ + + ++++VD R +D+L+ L+ +
Sbjct: 66 PMDA-LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNK 124
Query: 118 INKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFF 169
++ ++ ++ L P ++SAL + ++L + +P FF
Sbjct: 125 LDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL-MPEGPFF 175
Score = 64.8 bits (156), Expect = 5e-13
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 6/164 (3%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
VAIVGKPNVGKSTL+N+LLG P TTR ++ + ++ I +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ---IVFVDTPGLH 64
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
K + + +F + +++ + N V+ ++D + + +D +A +
Sbjct: 65 KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLV 121
Query: 305 SIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ K + +K L A +SA+ + +
Sbjct: 122 GNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADL 165
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 63.9 bits (154), Expect = 2e-12
Identities = 30/210 (14%), Positives = 70/210 (33%), Gaps = 13/210 (6%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ I G N GK++L+ L ++ P S +Y+ L+D G +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60
Query: 245 KTF--EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ + +K L ++++ V L ++I E+G +++ NK
Sbjct: 61 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 120
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAM-----FNFISAIKLNNINSFMESINHVYDSSII 357
+ IK+ ++ ++ + + + + ++ +
Sbjct: 121 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFA 180
Query: 358 HLSTSRITRALISAIKNHPPCRKKLIRPKL 387
+L + S K ++ I KL
Sbjct: 181 NLEA-SVVAFEGSINKRKISQWREWIDEKL 209
Score = 57.3 bits (137), Expect = 4e-10
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 13/131 (9%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
+P +++ G N GK++L LT P + ++D G
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHV 57
Query: 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVE------QDKLITNFLRKSGQPIV 115
+ + + K + + ++ + L IT ++G I+
Sbjct: 58 K--LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115
Query: 116 LVINKSENINS 126
+ NKSE +
Sbjct: 116 IACNKSELFTA 126
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 81
Score = 59.4 bits (144), Expect = 4e-12
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 359 LSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYIGNDYKRYL 418
+ +S I AL + R K+ + Q PP + N ++ + N K +L
Sbjct: 2 VPSSAINSALQKVLAFTNLPR----GLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFL 57
Query: 419 E 419
Sbjct: 58 R 58
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 58.8 bits (142), Expect = 8e-11
Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 33/177 (18%)
Query: 183 IKVAIVGKPNVGKSTLINSLL-------GENRVITYDTP---------GTTRDSIKSLFE 226
+ V +G + GK+TL +L V Y G T ++ +E
Sbjct: 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE 63
Query: 227 YNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIA 286
+ Y +D G + + + + IL++ A Q
Sbjct: 64 TAKRHYSHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSAADGPMPQTREHI 112
Query: 287 NFIYESG-RSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSF----AMFNFISAIK 337
+ G ++V +NK D + + +++ ++ LN F SA+
Sbjct: 113 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALL 169
Score = 47.6 bits (113), Expect = 5e-07
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 26/153 (16%)
Query: 5 LVLVGRPNVGKSTLFNRLT-----NSRDALVANYP-----------GLTRDRHYGEGYIG 48
+ +G + GK+TL LT + + V +Y G+T + + E
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65
Query: 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLR 108
K+ + +D G +K M Q D I +V G + Q + R
Sbjct: 66 KRHYSHVDCPGHADYIK-----NMITGAAQM----DGAILVVSAADGPMPQTREHILLAR 116
Query: 109 KSGQP-IVLVINKSENINSSISLDFYELGIGNP 140
+ G P IV+ +NK + ++ LD E+ + +
Sbjct: 117 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDL 149
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 59.2 bits (142), Expect = 2e-10
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 27/109 (24%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY-------------------- 46
+VG+PNVGKST F+ T +ANYP T + + G Y
Sbjct: 5 VVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63
Query: 47 ----IGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVD 91
+ ++D G P +G + + + + +I +VD
Sbjct: 64 YRNGLALIPVKMVDVAGLVPGAHEGR--GLGNKFLDDLRMASALIHVVD 110
Score = 42.2 bits (98), Expect = 6e-05
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRD 219
++ +VGKPNVGKST ++ V + P TT +
Sbjct: 2 EIGVVGKPNVGKSTFFSAATL-VDVEIANYPFTTIE 36
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 57.9 bits (139), Expect = 5e-10
Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 19/102 (18%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRD-----------------RHYGEGYIGK 49
+VG PNVGKST F +T S ANYP T D Y
Sbjct: 15 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVP 74
Query: 50 KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVD 91
+ D G G+ + + D I +V
Sbjct: 75 AFLTVFDIAGLTKGASTGV--GLGNAFLSHVRAVDAIYQVVR 114
Score = 45.6 bits (107), Expect = 5e-06
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRD 219
+K IVG PNVGKST ++ + P T D
Sbjct: 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID 47
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 53.6 bits (128), Expect = 3e-09
Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 14/168 (8%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAGI 240
+K+ ++G VGKS L+ + E++ D + N KK L DTAG
Sbjct: 3 MKILLIGDSGVGKSCLLVRFV-EDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG- 60
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
E+F I T A +IL+ D + +I + +
Sbjct: 61 ---------QERFRTI-TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQL 110
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ + +++ + + L F SA +N+N ++
Sbjct: 111 LLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 158
Score = 41.3 bits (96), Expect = 6e-05
Identities = 31/163 (19%), Positives = 50/163 (30%), Gaps = 18/163 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
++L+G VGKS L R + + G+ + K I DT G E
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE-- 62
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVD----GRQGLVEQDKLITNFLRKSGQPIVLVIN 119
T + II + D ++Q N ++LV N
Sbjct: 63 -------RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 115
Query: 120 KSENINSSISLDFYELGIGNPHI----ISALYGNGIKNFLENI 158
KS+ ++ D E I SA + + +
Sbjct: 116 KSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 158
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 51.6 bits (122), Expect = 2e-08
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 13/164 (7%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
V VG + GK+ L LL T + + K N ++ R
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES-----GRSLIV 298
+ + + + V+ Q+ + + + +S SL++
Sbjct: 62 FQLLDRFKSSARAV--------VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLI 113
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342
NK D + K+I+ ++K+LN L S + ++
Sbjct: 114 ACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 157
Score = 48.1 bits (113), Expect = 4e-07
Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 3/122 (2%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65
+ VG + GK+ LF RL + +T + + + + + ++
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61
Query: 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNF-LRKSGQPIVLVINKSENI 124
++ + + D F + + +++ + K+ +++ NK +
Sbjct: 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121
Query: 125 NS 126
+
Sbjct: 122 MA 123
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 51.2 bits (121), Expect = 4e-08
Identities = 28/196 (14%), Positives = 56/196 (28%), Gaps = 7/196 (3%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
V+++G + GK+TL++ + G T + + R
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 245 KTFE------VIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIV 298
+ + A++ IL++D + Q N + +V
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVV 127
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIH 358
NK D IH R + + + + + E +
Sbjct: 128 AANKID-RIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVT 186
Query: 359 LSTSRITRALISAIKN 374
S+++ ISAI
Sbjct: 187 DFASQVSIIPISAITG 202
Score = 44.3 bits (103), Expect = 9e-06
Identities = 44/218 (20%), Positives = 75/218 (34%), Gaps = 18/218 (8%)
Query: 1 MK---PVLVLVGRPNVGKSTLFNRLTNSRDALVAN--------YPGLTRDRHYGEGYIGK 49
MK P++ ++G + GK+TL + + S A + D G
Sbjct: 1 MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFL 60
Query: 50 KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK 109
K F I +T + T K+ +D+ I IVD +G Q + N LR
Sbjct: 61 KKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRM 120
Query: 110 SGQPIVLVINKSENINSSISL---DFYELGIGNPHIISALYGNGIKNFLENILTIELPYK 166
P V+ NK + I+ F E + + + + +
Sbjct: 121 YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESE 180
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLG 204
+F + +F + SI + I G L+ L+G
Sbjct: 181 RFDRVTDFASQVSI----IPISAITGEGIPELLTMLMG 214
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 50.3 bits (119), Expect = 5e-08
Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 22/177 (12%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRR 242
K+ I+G +VGK++ + ++ + + +K+++ + + K + DTAG
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG--- 63
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQ-----QNISAQDINIANFIYESGRSLI 297
E++ I T A IL+ D + I + +++ + L+
Sbjct: 64 -------QERYRTI-TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 115
Query: 298 VCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN-SFMESINHVYD 353
V + L F F SA N+ +F ++ + +
Sbjct: 116 VGNKCDMEDERVVSSERGRQLADHLGF----EFFEASAKDNINVKQTFERLVDVICE 168
Score = 44.9 bits (105), Expect = 3e-06
Identities = 23/165 (13%), Positives = 45/165 (27%), Gaps = 19/165 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
++++G +VGK++ R + + G+ + I DT G E
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE-- 65
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQD----KLITNFLRKSGQPIVLVIN 119
T + I + D ++LV N
Sbjct: 66 -------RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 118
Query: 120 KSENINSSISLDFYELG----IGNPHI-ISALYGNGIKNFLENIL 159
K + + + +G SA +K E ++
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 51.1 bits (122), Expect = 8e-08
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI 47
+VG PNVGKSTLFN LT + ANYP T + + G +
Sbjct: 7 IVGLPNVGKSTLFNALTKA-GIEAANYPFCTIEPNTGVVPM 46
Score = 40.3 bits (94), Expect = 2e-04
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 183 IKVAIVGKPNVGKSTLINSL 202
K IVG PNVGKSTL N+L
Sbjct: 3 FKCGIVGLPNVGKSTLFNAL 22
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 49.2 bits (116), Expect = 1e-07
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ ++G N GK+TL+ L E+ T G IKS+ K + +
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN---IKSVQSQGFKLNVWDIGGQRKI 73
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
R E ++ + + + + + S +++ NK
Sbjct: 74 RPYWRSYFENTDILIYVIDSADRKR-------FEETGQELTELLEEEKLSCVPVLIFANK 126
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D + I + SA+ + M +
Sbjct: 127 QDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172
Score = 43.4 bits (101), Expect = 1e-05
Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 26/168 (15%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
++L+G N GK+TL +L + + + G +G+
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF-------------KLNVW 65
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQD-----KLITNFLRKSGQPIVLVIN 119
G ++ + +DI+I+++D ++ + + S P+++ N
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125
Query: 120 KSENINS------SISLDFYELGIGNPHI--ISALYGNGIKNFLENIL 159
K + + + + L+ + + I SAL G G+++ + +
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 47.7 bits (112), Expect = 3e-07
Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ ++G N GK+T++ GE+ DT T E+ K + D G +
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGED----VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 58
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ + + V Q+ + ++ +G +L++ NK
Sbjct: 59 LRSYWRNYFESTDGLI------WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANK 112
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D I+ ++ SA+ ++ ++ +
Sbjct: 113 QDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 158
Score = 41.6 bits (96), Expect = 5e-05
Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
L+++G N GK+T+ + + T + I D GG +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTI----SPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + +++S + D + + + R +G +++ NK +
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQD----CQRELQSLLVEERLAGATLLIFANKQDLP 116
Query: 125 NS------SISLDFYELGIGNPHI--ISALYGNGIKNFLENIL 159
+ +L+ + + I SA+ G + ++ +L
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 159
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 48.1 bits (113), Expect = 3e-07
Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 19/182 (10%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFE 226
+ F +E KV IVG N GK+T++ V T T G+ + I
Sbjct: 9 RLFNHQEH---------KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV---- 55
Query: 227 YNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIA 286
NN ++++ D G ++ + + V + + +
Sbjct: 56 INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV------VVDSTDRERISVTREELYKML 109
Query: 287 NFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFME 346
L++ NK D I +K A+ + +E
Sbjct: 110 AHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 169
Query: 347 SI 348
+
Sbjct: 170 WM 171
Score = 35.7 bits (81), Expect = 0.004
Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 12/162 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++VG N GK+T+ + + + + T + E I F++ D GG E
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINNTRFLMWDIGGQES-- 71
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + T+ I+ D L LRK+G I +
Sbjct: 72 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131
Query: 125 NS----SISLDFYELGIGNPHII--SALYGNGIKNFLENILT 160
+ S L + HI AL G G+ LE +++
Sbjct: 132 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 173
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 47.4 bits (112), Expect = 4e-07
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 15/169 (8%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAGI 240
K+ ++G VGK+ ++ E+ + D E + K+ L DTAG
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFS-EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG- 64
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
E+F I T A ++L+ D S +I E S V
Sbjct: 65 ---------QERFRTI-TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK 114
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAM-FNFISAIKLNNINSFMESI 348
+ K + + + L + + F SA N+ + ++
Sbjct: 115 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163
Score = 40.9 bits (95), Expect = 7e-05
Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 21/166 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEP 62
L+L+G VGK+ + R + + D + K I DT G E
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE- 66
Query: 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDG----RQGLVEQDKLITNFLRKSGQPIVLVI 118
T + I+ + D + + +++
Sbjct: 67 --------RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 118
Query: 119 NKSENINSSIS----LDFYELGIGNPHI-ISALYGNGIKNFLENIL 159
NK + + + L G + SA ++N +
Sbjct: 119 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 47.4 bits (111), Expect = 4e-07
Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ I+G GK+T++ L V T T G + + G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE-----TVTYKNLKFQVWDLGGLT 60
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ + + + + + ++ + + L+V NK
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDR-----IGISKSELVAMLEEEELRKAILVVFANK 115
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D + N++ SA K ++ ME +
Sbjct: 116 QDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 161
Score = 43.9 bits (102), Expect = 6e-06
Identities = 26/161 (16%), Positives = 43/161 (26%), Gaps = 12/161 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
++++G GK+T+ RL + + K+
Sbjct: 8 ILILGLDGAGKTTILYRLQVGE------VVTTIPTIGFNVETVTYKNLKFQVWDLGGLTS 61
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ T I D G L LRK+ + E
Sbjct: 62 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 121
Query: 125 NSS----ISLDFYELGIGNPHI--ISALYGNGIKNFLENIL 159
+S SL L I SA G G+ +E ++
Sbjct: 122 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 47.3 bits (112), Expect = 1e-06
Identities = 45/205 (21%), Positives = 65/205 (31%), Gaps = 55/205 (26%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDT--------------------------- 213
+I V ++G + GKST L+ + I T
Sbjct: 5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKA 64
Query: 214 ---PGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVIL 270
G T D FE + +ID G R+ +I S A+ IL
Sbjct: 65 ERERGITIDIALWKFETPKYQVTVIDAPG--HRDFIKNMITGTSQ---------ADCAIL 113
Query: 271 LLDAQQ-------NISAQDINIANFIYESG-RSLIVCVNKWDSIIHNQ------RKIIKN 316
++ + Q A + G R LIV VNK DS+ ++ K N
Sbjct: 114 IIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSN 173
Query: 317 NIKKKLNFLSFAMFNFISAIKLNNI 341
IKK F IS +N+
Sbjct: 174 FIKKVGYNPKTVPFVPISGWNGDNM 198
Score = 30.4 bits (68), Expect = 0.35
Identities = 37/205 (18%), Positives = 62/205 (30%), Gaps = 61/205 (29%)
Query: 5 LVLVGRPNVGKSTLFNRLT------------------------NSRDALVANYPGLTRDR 40
+V++G + GKST L + + A V + R+R
Sbjct: 9 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER 68
Query: 41 HYGEG------YIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQ 94
K +ID G +K M T QA D I I+ G
Sbjct: 69 GITIDIALWKFETPKYQVTVIDAPGHRDFIK-----NMITGTSQA----DCAILIIAGGV 119
Query: 95 GLVE-------QDKLITNFLRKSG-QPIVLVINKSENINSS---------ISLDFYELGI 137
G E Q + G + +++ +NK +++ + +F +
Sbjct: 120 GEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVG 179
Query: 138 GNPH-----IISALYGNGIKNFLEN 157
NP IS G+ + N
Sbjct: 180 YNPKTVPFVPISGWNGDNMIEATTN 204
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 46.0 bits (108), Expect = 2e-06
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 13/168 (7%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAGI 240
K+ ++G VGK+ L+ + D + E N +K L DTAG
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFT-QGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 64
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
R F I + IL ++ + I + + ++ V
Sbjct: 65 ER----FRSITQSYYRSANALILTYDIT------CEESFRCLPEWLREIEQYASNKVITV 114
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ I +R+ + ++ + + SA + +N+ +
Sbjct: 115 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 162
Score = 37.5 bits (86), Expect = 0.001
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEP 62
+VL+G VGK+ L R T + D I + I DT G E
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE- 65
Query: 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE 122
+ + + ++ A+I + I R + + + VLV NK +
Sbjct: 66 --RFRSITQSYYRSANALILTYDITCEESFRC--LPEWLREIEQYASNKVITVLVGNKID 121
Query: 123 ----NINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENILT 160
S + + ++ SA + ++ ++
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 46.0 bits (108), Expect = 2e-06
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL-FEYNNKKYILIDTAGIR 241
+K+ I+G+ VGKS+L+ + +K++ + N K + DTAG
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67
Query: 242 R 242
R
Sbjct: 68 R 68
Score = 44.1 bits (103), Expect = 7e-06
Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 19/165 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
++++G VGKS+L R T+ D +A G+ K I DT G E
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE-- 67
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVD-----GRQGLVEQDKLITNFLRKSGQPIVLVI 118
T + +I + D L + + ++ +LV
Sbjct: 68 -------RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120
Query: 119 NKSENINSSISLDFYEL---GIGNPHI-ISALYGNGIKNFLENIL 159
NK + N + + I SA +G++ E ++
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV 165
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 43.5 bits (101), Expect = 1e-05
Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 6/168 (3%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGI 240
+KV I+G VGK++L++ + + Y K + + DTAG
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
R + + L + N N ++
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVT-NASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ + + K L + SA N+++ E I
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLF---LTSAKNAINVDTAFEEI 166
Score = 36.2 bits (82), Expect = 0.003
Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 18/179 (10%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR--DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEP 62
++++G VGK++L +R N + A + + + DT G E
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 64
Query: 63 EVKKGIMHEMTKQTKQAIIESDIII---FIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
+ + ++ D+ F N I+
Sbjct: 65 FQS--LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 120 KSENINSSISLDFY-----ELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKE 173
+E +S LG + SA + E I + ++ +
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA------RSALQQNQ 175
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 43.4 bits (101), Expect = 1e-05
Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 19/170 (11%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL-FEYNNKKYILIDTAGIRR 242
K ++G GKS L++ + + + K + K + DTAG
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG--- 63
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS----LIV 298
E+F T A +L+ D + + S +I+
Sbjct: 64 -------QERFR-SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 115
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
C NK D + ++ + + N L F SA+ N+
Sbjct: 116 CGNKKDLDADREVTFLEASRFAQENELMFL---ETSALTGENVEEAFVQC 162
Score = 39.9 bits (92), Expect = 2e-04
Identities = 21/164 (12%), Positives = 40/164 (24%), Gaps = 19/164 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
+++G GKS L ++ + + G+ I DT G E
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE-- 65
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP----IVLVIN 119
T+ + + + D + I+L N
Sbjct: 66 -------RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 118
Query: 120 KSENINSSISLDFYELGIGNPHII-----SALYGNGIKNFLENI 158
K + + + SAL G ++
Sbjct: 119 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 162
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 42.7 bits (99), Expect = 1e-05
Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ +VG GK+T++ L V T T G ++++ Y N + + D G +
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE----YKNISFTVWDVGGQDK 56
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ + + V + + + + L+V NK
Sbjct: 57 IRPLWRHYFQNTQGLIF------VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D I + + A + + ++ +
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156
Score = 39.3 bits (90), Expect = 2e-04
Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 16/164 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++VG GK+T+ +L T + SF + D GG +
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK-- 56
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS--- 121
+ + + T+ I D + E+ + +++ NK
Sbjct: 57 IRPLWRHYFQNTQGLIFVVD--SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114
Query: 122 -----ENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILT 160
I + L A G+G+ L+ +
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 42.8 bits (99), Expect = 2e-05
Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 9/166 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ +VG GK+T +N + T +++ + + N + R
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
R+ S I + + + + N+ + G ++V NK
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEK-------IEASKNELHNLLDKPQLQGIPVLVLGNK 113
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D K + + IS + +NI+ ++ +
Sbjct: 114 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 159
Score = 37.4 bits (85), Expect = 0.001
Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 15/163 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
L LVG GK+T N + + + T + + G + + D GG
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQ---FNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 61
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ ++++ I + + + + + G P++++ NK +
Sbjct: 62 SMWERYCRGVSAIVYMVDAADQEKIEASKN----ELHNLLDKPQLQGIPVLVLGNKRDLP 117
Query: 125 NSSISLDFYEL-------GIGNPHI-ISALYGNGIKNFLENIL 159
+ + E IS + I L+ ++
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 42.6 bits (99), Expect = 2e-05
Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 14/168 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAGIR 241
KV +VG VGK+ L+ + D + + + K L DTAG
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG-- 65
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
E+F + T +A+ ++LL D S +I V +
Sbjct: 66 --------QERFRSV-THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM 116
Query: 302 KWDSIIH-NQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ + +++K +KL F SA N++ +I
Sbjct: 117 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI 164
Score = 36.4 bits (83), Expect = 0.003
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR--DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
++LVG VGK+ L R + + G+ + K + DT G E
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 43.5 bits (102), Expect = 2e-05
Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 29/156 (18%)
Query: 185 VAIVGKPNVGKSTLINSLL-----------GENRVITYDTP------GTTRDSIKSLFEY 227
+ I + GK+T +L T D G T + + +
Sbjct: 9 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 68
Query: 228 NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIAN 287
+ + +ID G EV V + I++ D+ Q + Q +
Sbjct: 69 KDHRINIIDAPGHVDFTI--EVERSMRV---------LDGAIVVFDSSQGVEPQSETVWR 117
Query: 288 FIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323
+ I NK D ++ ++++L
Sbjct: 118 QAEKYKVPRIAFANKMD-KTGADLWLVIRTMQERLG 152
Score = 35.8 bits (82), Expect = 0.006
Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 8/138 (5%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDAL--VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
+ + GK+T R+ + + + E + I +
Sbjct: 10 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 69
Query: 64 VKKGIMHEM------TKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117
+ + + T + ++++ D I + D QG+ Q + + K P +
Sbjct: 70 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 129
Query: 118 INKSENINSSISLDFYEL 135
NK + + + L +
Sbjct: 130 ANKMDKTGADLWLVIRTM 147
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 42.0 bits (97), Expect = 3e-05
Identities = 20/165 (12%), Positives = 43/165 (26%), Gaps = 19/165 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
L+ +G N GK+TL + L N R L H + +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDR------LATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 65 KKGIMHEMTKQTKQAIIESD---------IIIFIVDGRQGLVEQDKLITNFLRKSGQPIV 115
+ + + + + D + + +D K P
Sbjct: 57 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116
Query: 116 LVINKSENINSSISLDFYELGIGNPHI----ISALYGNGIKNFLE 156
+ + + ++ + G + S + NG +
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161
Score = 40.8 bits (94), Expect = 7e-05
Identities = 19/168 (11%), Positives = 49/168 (29%), Gaps = 9/168 (5%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
K+ +G N GK+TL++ L + T N K+ D G +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQA 57
Query: 244 NKTFEVIEKFSVIKTLK---SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
+ ++ + E + A+ ++ I + V
Sbjct: 58 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
++ + + + ++ +++ S + N + +
Sbjct: 118 SEAE--LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 163
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 41.5 bits (96), Expect = 5e-05
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 163 LPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIK 222
+ K + KE ++ I+G GK+T++ L V T T G +++
Sbjct: 7 MFDKLWGSNKEL---------RILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL- 56
Query: 223 SLFEYNNKKYILIDTA 238
Y N K + D
Sbjct: 57 ---SYKNLKLNVWDLG 69
Score = 32.3 bits (72), Expect = 0.060
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTG 58
++++G GK+T+ RL G + + + D G
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNL----KLNVWDLG 69
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 41.4 bits (96), Expect = 6e-05
Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 14/175 (8%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL-FEYNNKKYILIDTAGIR 241
K+ ++G VGKS L+ + Y + IK++ + K + DTAG
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG-- 64
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR--SLIVC 299
E+F I T ++ +I++ D S + + + +++
Sbjct: 65 --------QERFRTI-TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL 115
Query: 300 VNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDS 354
+ + ++R + + K+ + + N ++F+ + +S
Sbjct: 116 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 170
Score = 37.1 bits (85), Expect = 0.002
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 15/163 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
L+L+G VGKS L R ++ + G+ E I DT G E
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE-- 66
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSEN 123
+ + + I II++ V ++ + R + ++ ++ ++
Sbjct: 67 -RFRTITSSYYRGSHGI----IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 121
Query: 124 INSSISLDFYELGIGNPHI-------ISALYGNGIKNFLENIL 159
+ Y++ SAL +++ +
Sbjct: 122 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 164
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 40.7 bits (94), Expect = 8e-05
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 9/160 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++VG VGKS L + D V +Y D + + + + I E
Sbjct: 7 VIMVGSGGVGKSALTLQFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE-- 122
I + + + I + + + I P +LV NKS+
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEM--ESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 123 --NINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENIL 159
S ++ SA + +++
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162
Score = 34.5 bits (78), Expect = 0.010
Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 19/170 (11%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
KV +VG VGKS L + + V Y+ K + + + ++DTAG
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDIN-----IANFIYESGRSLIV 298
+ + + + + S I + ++
Sbjct: 66 AAIRDNYFRS-----------GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 114
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
NK D Q + + + +++ SA N++ +
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYV---ETSAKTRANVDKVFFDL 161
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 40.6 bits (94), Expect = 1e-04
Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 19/170 (11%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL-FEYNNKKYILIDTAGIRR 242
KV ++G VGKS L++ + + + +S+ + K + DTAG
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG--- 62
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISA----QDINIANFIYESGRSLIV 298
E++ I T A +L+ D ++++ + + +S +++
Sbjct: 63 -------QERYRRI-TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 114
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
NK D + + + + + F SA+ N+ ++I
Sbjct: 115 VGNKSD---LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 161
Score = 39.9 bits (92), Expect = 2e-04
Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 15/164 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPE 63
+VL+G VGKS L +R T + L + GK I DT G E
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE-- 64
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ--PIVLVINKS 121
+T + ++++ + ++ + + I+LV NKS
Sbjct: 65 ----RYRRITSAYYR-GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 119
Query: 122 ENINSSISLD----FYELGIGNPHI-ISALYGNGIKNFLENILT 160
+ + + I SAL ++ +NILT
Sbjct: 120 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 163
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 40.0 bits (92), Expect = 1e-04
Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 8/159 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
LV+VG VGKS L +L + V Y D + + I ++ ++ E
Sbjct: 6 LVVVGAGGVGKSALTIQLIQ--NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + + + + I + + + + I P+VLV NK +
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNT--KSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 125 NSSISLDFYELG---IGNPHI-ISALYGNGIKNFLENIL 159
++ + G P+I SA G+++ ++
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Score = 37.3 bits (85), Expect = 0.001
Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 10/165 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
K+ +VG VGKS L L+ + V YD + + + ++DTAG
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKW 303
+ + + I + ++I I +++ NK
Sbjct: 65 SAMRDQYMRT------GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 304 DSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D ++ + + SA + ++
Sbjct: 119 DLAARTVESRQAQDLARSYG----IPYIETSAKTRQGVEDAFYTL 159
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 40.0 bits (92), Expect = 1e-04
Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 8/163 (4%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ + G VGKS+L R +Y T + Y + KS +
Sbjct: 5 VAVFGAGGVGKSSLVLRFVK--GTFRESYIP-TVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK---- 120
+ M ++ A I I + +++ PI+LV NK
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 121 SENINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENILTIE 162
S + + SA + +K + +L +E
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164
Score = 33.4 bits (75), Expect = 0.027
Identities = 19/166 (11%), Positives = 47/166 (28%), Gaps = 8/166 (4%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+VA+ G VGKS+L+ + +Y + + + DT G +
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ + + ++ + +++ NK
Sbjct: 63 FPAMQRLSISKGHA-----FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 117
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D + + + + +F SA +N+ + +
Sbjct: 118 CDESPSREVQSSEAEALARTWKCAFM---ETSAKLNHNVKELFQEL 160
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 39.3 bits (90), Expect = 2e-04
Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 14/167 (8%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
L + G + GK+TL LT + ++ R I V
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGI---TIDIGFSAFKLENYRITLV 64
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
++ + A D+ + +VD ++G Q L PI++VI KS+N
Sbjct: 65 DAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNA 124
Query: 125 NSSISLDFYEL---------GIGNPHI--ISALYGNGIKNFLENILT 160
+ + + N I ISA G G+ I+T
Sbjct: 125 GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIIT 171
Score = 39.3 bits (90), Expect = 3e-04
Identities = 23/170 (13%), Positives = 57/170 (33%), Gaps = 2/170 (1%)
Query: 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
+ I + I G + GK+TL L +D ++ + + ++
Sbjct: 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQ--KRGITIDIGFSAFKLENY 59
Query: 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIV 298
I + +V+ I A +V+ + + + + + I + +I
Sbjct: 60 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVIT 119
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ + + ++I +I + + L + ISA ++ I
Sbjct: 120 KSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLI 169
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 39.4 bits (90), Expect = 3e-04
Identities = 29/160 (18%), Positives = 47/160 (29%), Gaps = 6/160 (3%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+VL+G VGKSTL N D++ ++ + Y + I
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEV-LGEDTYERTLMVDGESATIILLDMWENK 64
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE-- 122
+ I + E + + PI+LV NKS+
Sbjct: 65 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124
Query: 123 --NINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENIL 159
S + I SA + +K E I+
Sbjct: 125 RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 164
Score = 37.4 bits (85), Expect = 0.001
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY 232
Y +V ++G+ VGKSTL N G + + D D+ + + +
Sbjct: 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESA 53
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 40.5 bits (94), Expect = 3e-04
Identities = 26/196 (13%), Positives = 62/196 (31%), Gaps = 23/196 (11%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRD------------SIKSLFEYNNKKY 232
++++ + GKSTL +SL+ +I+ G R +IKS +
Sbjct: 20 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 79
Query: 233 ILIDTAGIRRRNKTFEVIEKFSVIKTLKSILE--------ANVVILLLDAQQNISAQDIN 284
D I+++ + + ++++D + + Q
Sbjct: 80 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 139
Query: 285 IANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSF 344
+ +V +NK D + ++ K ++ + ++ +S +
Sbjct: 140 VLRQALGERIKPVVVINKVD-RALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDV 198
Query: 345 MESI--NHVYDSSIIH 358
V S +H
Sbjct: 199 QVYPARGTVAFGSGLH 214
Score = 27.4 bits (60), Expect = 3.5
Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 22/152 (14%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTR--DRHYGEGYIG---KKSFIIIDTGGF 60
++ + GKSTL + L + A G R D E G K + I + +
Sbjct: 21 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 80
Query: 61 EPEVKKGIMHEMTKQTKQAIIES-----------------DIIIFIVDGRQGLVEQDKLI 103
+ +VK+ +I+S D + +VD +G+ Q + +
Sbjct: 81 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 140
Query: 104 TNFLRKSGQPIVLVINKSENINSSISLDFYEL 135
V+VINK + + + +L
Sbjct: 141 LRQALGERIKPVVVINKVDRALLELQVSKEDL 172
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 39.8 bits (92), Expect = 3e-04
Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 37/221 (16%)
Query: 166 KKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL- 224
+ ++ +++ E++ + +G + GKSTL ++L ++ T K
Sbjct: 8 QNEVDQELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAG 67
Query: 225 -----FEYNNKKYILIDTAGIRRRNKTFE-------------VIEKFSVIKTLKSILEAN 266
+ G K V + +A+
Sbjct: 68 KESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQAD 127
Query: 267 VVILLLDAQQNISAQDINIANFIYESG--------RSLIVCVNKWDSIIHNQRKIIKNNI 318
+ +L++ A++ E L+V +NK D +
Sbjct: 128 IGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKEC 187
Query: 319 KKKL----------NFLSFAMFNFISAIKLNNINSFMESIN 349
KL N + + +SA N+ ++S
Sbjct: 188 VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSV 228
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 39.2 bits (90), Expect = 3e-04
Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 23/189 (12%)
Query: 183 IKVAIVGKPNVGKSTLINSLLG---------ENRVITYDTPGTTRDSIKSLFEYNNKKYI 233
+ + +VG + GK+TL+ ++ G R +T + + Y+
Sbjct: 9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYV 68
Query: 234 LIDTAGIRRRNKTFEVIEKFSVIKTLK------------SILEANVVILLLDAQQNISAQ 281
+ + + + + S I ++++ ++++ +
Sbjct: 69 TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 128
Query: 282 DINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI--SAIKLN 339
+ ++LI+ NK D + + IK+ I SA+
Sbjct: 129 REHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKI 188
Query: 340 NINSFMESI 348
NI+S +E I
Sbjct: 189 NIDSLIEGI 197
Score = 31.5 bits (70), Expect = 0.12
Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 34/195 (17%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGE---------------GYIGK 49
+ +VG + GK+TL +T + + G Y+ +
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
Query: 50 KSFIIIDTGGFEPEVKK------GIMHEMTKQTKQAIIESDIIIFIVDGRQ-GLVEQDKL 102
S + +++ + D I +V + Q +
Sbjct: 71 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 130
Query: 103 ITNFLRKSGQPIVLVINK---------SENINSSISLDFYELGIGNPHII--SALYGNGI 151
L G ++++ + + I N II SAL+ I
Sbjct: 131 HFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINI 190
Query: 152 KNFLENILT-IELPY 165
+ +E I I+ PY
Sbjct: 191 DSLIEGIEEYIKTPY 205
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 38.9 bits (89), Expect = 4e-04
Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 9/168 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
LV+VG VGKS L + V++Y D + + + E
Sbjct: 9 LVVVGGGGVGKSALTIQFIQ--SYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 66
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE-- 122
+ + + ++ I G + I + P+VLV NK++
Sbjct: 67 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQ--ILRVKDRDDFPVVLVGNKADLE 124
Query: 123 --NINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENILTIELPYKK 167
+ + SA + E ++ Y++
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 172
Score = 36.2 bits (82), Expect = 0.003
Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 9/166 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
K+ +VG VGKS L + V YD + + + ++DTAG
Sbjct: 7 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 66
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
E + I + + I +++ NK
Sbjct: 67 FGAMREQYMRAGH------GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 120
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D Q + + + +++ SA N++ E +
Sbjct: 121 ADLESQRQVPRSEASAFGASHHVAYF---EASAKLRLNVDEAFEQL 163
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 38.8 bits (89), Expect = 4e-04
Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 19/184 (10%)
Query: 165 YKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL 224
K F KE ++ ++G GK+T++ L V T T G ++
Sbjct: 4 LSKIFGNKEM---------RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET---- 50
Query: 225 FEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDIN 284
Y N K+ + D G + + + V D +
Sbjct: 51 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF------VVDCADRDRIDEARQELHR 104
Query: 285 IANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSF 344
I N +++ NK D + I+ + A + +
Sbjct: 105 IINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 164
Query: 345 MESI 348
+ +
Sbjct: 165 LTWL 168
Score = 34.2 bits (77), Expect = 0.015
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 16/160 (10%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
++++G GK+T+ +L + G + + F + D GG +
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV----KFNVWDVGGQDKIR 70
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ Q +++ I + RQ L I N I++ NK +
Sbjct: 71 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----IINDREMRDAIILIFANKQDLP 126
Query: 125 NS------SISLDFYELGIGNPHII--SALYGNGIKNFLE 156
++ L + N ++ A G+G+ L
Sbjct: 127 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 166
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 38.4 bits (88), Expect = 5e-04
Identities = 17/170 (10%), Positives = 50/170 (29%), Gaps = 10/170 (5%)
Query: 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
SI +++ ++G GKS+LI+ L + T + K + + ++++
Sbjct: 2 SIPELRLGVLGDARSGKSSLIHRFL-TGSYQVLEK--TESEQYKKEMLVDGQTHLVLIRE 58
Query: 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIV 298
+ F + + + ++ G +L +
Sbjct: 59 EAGAPDAKFSGWADAVIFVFSLEDENSF-------QAVSRLHGQLSSLRGEGRGGLALAL 111
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ + R + + + + A N++ + +
Sbjct: 112 VGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV 161
Score = 30.7 bits (68), Expect = 0.20
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
L ++G GKS+L +R
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGS 29
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 38.5 bits (88), Expect = 5e-04
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
+KV I+G VGK++L+N + + Y T G + + + + + DTAG
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 242 R 242
R
Sbjct: 63 R 63
Score = 33.9 bits (76), Expect = 0.020
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
++++G VGK++L N+ N +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKK 26
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 38.0 bits (87), Expect = 6e-04
Identities = 28/166 (16%), Positives = 49/166 (29%), Gaps = 9/166 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
KV ++G VGKS L + + YD + + + ++DTAG +
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
++ K L L + Q+I I +I+ NK
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQ------QSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D + + + F SA ++ I
Sbjct: 118 VDLESEREVSSSEGRALAEEWGCPFM---ETSAKSKTMVDELFAEI 160
Score = 38.0 bits (87), Expect = 7e-04
Identities = 26/168 (15%), Positives = 45/168 (26%), Gaps = 25/168 (14%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V++G VGKS L + + Y D + E + ++ E
Sbjct: 6 VVVLGSGGVGKSALTVQFVT--GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS--- 121
+ K + I+ + Q + I R P++LV NK
Sbjct: 64 FASMRDLYIKNGQGFIL--VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 122 ----------ENINSSISLDFYELGIGNPHIISALYGNGIKNFLENIL 159
+ F E SA + I+
Sbjct: 122 SEREVSSSEGRALAEEWGCPFME--------TSAKSKTMVDELFAEIV 161
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 38.1 bits (87), Expect = 7e-04
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 168 FFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSI 221
KK K+ +G N GK+TL++ L + T T + +
Sbjct: 8 GLYKKT---------GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL 52
Score = 33.9 bits (76), Expect = 0.021
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY 46
LV +G N GK+TL + L + R T + G
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 57
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 37.3 bits (85), Expect = 0.001
Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 4/116 (3%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
LV+VG VGKS L + V +Y D + I + I+ E
Sbjct: 7 LVVVGDGGVGKSALTIQFFQ--KIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 64
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK 120
+ + + +I + +LI + P++LV NK
Sbjct: 65 FSAMREQYMRTGDGFLIVYSVTDKASFEHV--DRFHQLILRVKDRESFPMILVANK 118
Score = 35.0 bits (79), Expect = 0.006
Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 13/172 (7%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
K+ +VG VGKS L + V YD + + ++DTAG
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKW 303
+ E + + + +++ I +I+ NK
Sbjct: 66 SAMREQYMRTG------DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 119
Query: 304 DSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN---SFMESINHVY 352
D + + + + + SA K +N +F + + +
Sbjct: 120 DLMHLRKVTRDQGKEMATKYNIPYI---ETSA-KDPPLNVDKTFHDLVRVIR 167
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 36.9 bits (84), Expect = 0.002
Identities = 29/191 (15%), Positives = 56/191 (29%), Gaps = 24/191 (12%)
Query: 1 MKPV-LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
M+ + V+VG VGK+ L T + + Y D + IG + + +
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTT--NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 58
Query: 60 FEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
E + QT + + + E+ P +LV
Sbjct: 59 AGQEDYDRLRPLSYPQTDV--FLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGT 115
Query: 120 KSENINSSISLDFYELGIGNPHI------------------ISALYGNGIKNFLENILTI 161
+ + + +++ P SAL G+KN + +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 175
Query: 162 ELPYKKFFKKK 172
L + K +
Sbjct: 176 ALEPPEPKKSR 186
Score = 33.8 bits (76), Expect = 0.018
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL 234
IK +VG VGK+ L+ S Y T D+ + Y L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVP--TVFDNYAVTVMIGGEPYTL 53
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 37.2 bits (85), Expect = 0.002
Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 6/170 (3%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
IK+ +G VGK+T + +N+ D + YN + +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYT-DNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64
Query: 243 RNKTFEV--IEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
+ ++ E+F + T +A +L+ D S ++ ++
Sbjct: 65 HLQLWDTAGQERFRSLTTA-FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 123
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLS--FAMFNFISAIKLNNINSFMESI 348
+ + N ++ + SA N+ +E++
Sbjct: 124 IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 173
Score = 32.2 bits (72), Expect = 0.077
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
L+ +G VGK+T R T+++
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNK 29
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 36.6 bits (83), Expect = 0.002
Identities = 11/97 (11%), Positives = 20/97 (20%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
MK +++ +G P GKST R + + G
Sbjct: 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIV 60
Query: 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLV 97
+ + + R
Sbjct: 61 TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWE 97
Score = 29.7 bits (65), Expect = 0.38
Identities = 13/61 (21%), Positives = 20/61 (32%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ +G P GKST + +N R SI + E + KY +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 245 K 245
Sbjct: 65 F 65
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 36.0 bits (82), Expect = 0.003
Identities = 17/163 (10%), Positives = 45/163 (27%), Gaps = 13/163 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++G VGKS L + T+ + I + +
Sbjct: 6 YIIIGDTGVGKSCLLLQFTD--KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + ++++ + R+ + + + S +V+++ +++
Sbjct: 64 SFRSITRSYYRGAAGA----LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 119
Query: 125 NSSISLDFYELGIGNPHI-------ISALYGNGIKNFLENILT 160
S E G SA ++ N
Sbjct: 120 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 162
Score = 31.8 bits (71), Expect = 0.084
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTP 214
K I+G VGKS L+ + +D
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT 35
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 35.8 bits (81), Expect = 0.003
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD 212
IK+ +VG VGKS++I Y
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYK 32
Score = 33.9 bits (76), Expect = 0.015
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
+V+VG VGKS++ R
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGI 26
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 35.8 bits (81), Expect = 0.003
Identities = 21/168 (12%), Positives = 57/168 (33%), Gaps = 9/168 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
LV+VG VGKS L + V +Y D + + I ++ + E
Sbjct: 8 LVVVGGGGVGKSALTIQFIQ--SYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + + + ++ + + + + + I + P++L+ NK++
Sbjct: 66 FGAMREQYMRTGEGFLLVFSVTDRGS--FEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123
Query: 125 NSSISLDFYELG----IGNPHI-ISALYGNGIKNFLENILTIELPYKK 167
+ + ++ SA + ++ + +++
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQE 171
Score = 32.3 bits (72), Expect = 0.055
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG 215
E ++ +VG VGKS L + V YD
Sbjct: 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI 38
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 35.6 bits (81), Expect = 0.005
Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 22/177 (12%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAGI 240
K I+G VGKS L++ E + + + + E + +K + DTAG
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFT-EKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG- 62
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNIS----AQDINIANFIYESGRSL 296
E+F + T A +++ D + + + + A + +
Sbjct: 63 ---------QERFRAV-TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI 112
Query: 297 IVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN-SFMESINHVY 352
I+ NK D + + N L F SA N+ +F+E+ +Y
Sbjct: 113 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFL---EASAKTGENVEDAFLEAAKKIY 166
Score = 32.2 bits (72), Expect = 0.061
Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 19/165 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++G VGKS L ++ T + D + G I + + ++
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKK---------FMADCPHTIGVEFGTRIIEVSGQKIKLQI 57
Query: 65 KKGIMHEMTKQTKQAIIES---DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS 121
E + ++ ++++ + R +T+ + V+++ +
Sbjct: 58 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 117
Query: 122 ENINSSISLDFYELG------IGNPHI-ISALYGNGIKNFLENIL 159
+ + YE G + SA G +++
Sbjct: 118 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 162
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 35.4 bits (80), Expect = 0.005
Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 16/174 (9%)
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-GTTRDSIKSLFEYNNKKYILIDTA 238
+ IK+ ++G+ VGKS+++ + + + G + + + K+ + DTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQ----DINIANFIYESGR 294
G E+F+ + A +++ D + S + +
Sbjct: 61 G----------QERFASL-APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI 109
Query: 295 SLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ + NK D + + + +KL +F SA N+N I
Sbjct: 110 IIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163
Score = 31.9 bits (71), Expect = 0.069
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
LVL+G VGKS++ R ++
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSND 27
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 36.0 bits (82), Expect = 0.005
Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 28/189 (14%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDT----------PGTTRDSIKSLF----- 225
E ++ G + GKSTLI LL ++++I D GTT D +
Sbjct: 8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGL 67
Query: 226 --EYNNKKYILIDTAGIRRRNKTFEVIE---KFSVIKTLKSILEAN-VVILLLDAQQNIS 279
E I + + F + + + + + + I+L+DA+ +
Sbjct: 68 QAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ 127
Query: 280 AQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF------- 332
Q + G IV + ++ ++ L F F
Sbjct: 128 TQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVP 187
Query: 333 ISAIKLNNI 341
+SA+K +N+
Sbjct: 188 MSALKGDNV 196
Score = 27.1 bits (59), Expect = 3.5
Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 38/191 (19%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ G + GKSTL RL + + ++ G G + + G + E
Sbjct: 12 FLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAER 71
Query: 65 KKGI-----------------------MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDK 101
++GI + T+ D+ I +VD R G+ Q +
Sbjct: 72 EQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR 131
Query: 102 LITNFLRKSGQPIVLVINKSENINS-------------SISLDFYELGIGNPHII--SAL 146
+ G ++V ++N + + SAL
Sbjct: 132 RHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSAL 191
Query: 147 YGNGIKNFLEN 157
G+ + N E
Sbjct: 192 KGDNVVNKSER 202
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 35.5 bits (80), Expect = 0.005
Identities = 15/159 (9%), Positives = 39/159 (24%), Gaps = 5/159 (3%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ ++G +VGKS+L + V +Y + + + + + +
Sbjct: 7 IAILGYRSVGKSSLTIQFVE--GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ I+ + ++ L + +V
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 125 NSSISLDFYELG--IGNPHI-ISALYGNGIKNFLENILT 160
+ L + SA + I+
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIIL 163
Score = 33.6 bits (75), Expect = 0.020
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD 212
K+AI+G +VGKS+L + V +YD
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYD 34
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 35.4 bits (81), Expect = 0.006
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 25/149 (16%)
Query: 5 LVLVGRPNVGKSTLFNRLT------NSRDALVANYP---------GLTRDRHYGEGYIGK 49
+ +G + GK+TL +T G+T + + E
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65
Query: 50 KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK 109
+ + D G VK M T D I +V G + Q + R+
Sbjct: 66 RHYAHTDCPGHADYVK-----NMITGTAPL----DGCILVVAANDGPMPQTREHLLLARQ 116
Query: 110 -SGQPIVLVINKSENINSSISLDFYELGI 137
+ +V+ +NK++ + S ++ EL I
Sbjct: 117 IGVEHVVVYVNKADAVQDSEMVELVELEI 145
Score = 33.9 bits (77), Expect = 0.022
Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 32/176 (18%)
Query: 183 IKVAIVGKPNVGKSTLINSLL------GENRVITYDTP---------GTTRDSIKSLFEY 227
+ V +G + GK+TL ++ G + Y+ G T ++ +
Sbjct: 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST 63
Query: 228 NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIAN 287
+ Y D G K +I + + IL++ A Q
Sbjct: 64 AARHYAHTDCPGHADYVK--NMITGTAP---------LDGCILVVAANDGPMPQTREHLL 112
Query: 288 FIYE-SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSF----AMFNFISAIK 337
+ ++V VNK D++ ++ ++++ I++ L + SA+
Sbjct: 113 LARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALC 168
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 35.3 bits (80), Expect = 0.006
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
M P+L GK+TL +L
Sbjct: 1 MIPLLAFAAWSGTGKTTLLKKL 22
Score = 32.3 bits (72), Expect = 0.064
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 185 VAIVGKPNVGKSTLINSLLGE 205
+A GK+TL+ L+
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPA 25
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 35.0 bits (79), Expect = 0.006
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 10/119 (8%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
++++G NVGK+ L R R G+ + + + DT G E
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ---PIVLVIN 119
K + H + ++ + I + P +LV N
Sbjct: 65 RKSMVQHYYRNVHA------VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 117
Score = 34.2 bits (77), Expect = 0.011
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
K+ ++G NVGK+ L + T G + K L DTAG
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62
Query: 242 RRNKTF 247
R K+
Sbjct: 63 RFRKSM 68
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 35.1 bits (79), Expect = 0.006
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYI 233
KV ++G P VGKS L G + G T D + +
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMV 52
Score = 34.7 bits (78), Expect = 0.010
Identities = 24/157 (15%), Positives = 42/157 (26%), Gaps = 2/157 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
++L+G P VGKS L D A G T DR +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
G M +D F + + T+ + + +S +
Sbjct: 64 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 123
Query: 125 NSSISLDFYELGIGNPHI-ISALYGNGIKNFLENILT 160
+ I SA + ++ E ++
Sbjct: 124 SVDEGRACAV-VFDCKFIETSAALHHNVQALFEGVVR 159
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 35.3 bits (80), Expect = 0.006
Identities = 26/184 (14%), Positives = 61/184 (33%), Gaps = 18/184 (9%)
Query: 183 IKVAIVGKPNVGKSTLINSLLG---ENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
+ + +VG + GK+TL +L G + T + T+
Sbjct: 6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSP 65
Query: 240 I----------RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFI 289
+ RR + +++ T+ + +L+ A + + +
Sbjct: 66 VCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM 125
Query: 290 Y---ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI--SAIKLNNINSF 344
+++I+ NK + + + IK+ + I SA+ NI+
Sbjct: 126 ALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVL 185
Query: 345 MESI 348
+++I
Sbjct: 186 VKAI 189
Score = 26.5 bits (57), Expect = 5.0
Identities = 26/182 (14%), Positives = 47/182 (25%), Gaps = 28/182 (15%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYP--GLTRDRHYGEGYIGK-----KSFIIIDT 57
+ +VG + GK+TL LT + G+T + + I + +
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 67
Query: 58 GGFEPEVKKG---------IMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFL- 107
E + + D I ++ +
Sbjct: 68 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 127
Query: 108 ----RKSGQPIVLVINK-----SENINSSISLDFYELGIGNPHII--SALYGNGIKNFLE 156
+K+ I + I N II SAL+G I ++
Sbjct: 128 QIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVK 187
Query: 157 NI 158
I
Sbjct: 188 AI 189
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 35.4 bits (80), Expect = 0.006
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGE 205
+K+ I G+P VGK+TL+ ++
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVER 23
Score = 26.5 bits (57), Expect = 4.9
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTN 24
MK +++ G P VGK+TL ++
Sbjct: 1 MK--IIITGEPGVGKTTLVKKIVE 22
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 36.0 bits (82), Expect = 0.007
Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)
Query: 178 HSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDT 237
++ ++ +VG + GKS+++ +++G + + T R I L
Sbjct: 20 DPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQ 79
Query: 238 AGIRRRNKTFEVIEKFS-----VIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES 292
+K ++ FS +I+ + N I I + + +
Sbjct: 80 EWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLP 139
Query: 293 GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAM 329
G + + ++ I R+++ IKK+ +
Sbjct: 140 GITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVT 176
Score = 26.3 bits (57), Expect = 8.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 3 PVLVLVGRPNVGKSTLFNRLT 23
P +V+VG + GKS++ +
Sbjct: 25 PQIVVVGSQSSGKSSVLENIV 45
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 34.9 bits (79), Expect = 0.008
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 14/174 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRR 242
KV ++G+ VGK++L+ + T K L + DTAG R
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ + ++N IL+ D S Q + +C+
Sbjct: 65 FHALGPIY-----------YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCI 113
Query: 303 WDSIIHNQRKIIKN-NIKKKLNFLSFAMFNFISAIKLNNIN-SFMESINHVYDS 354
+ I +++ + + A SA + I F++ + ++
Sbjct: 114 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 167
Score = 33.0 bits (74), Expect = 0.034
Identities = 25/167 (14%), Positives = 48/167 (28%), Gaps = 23/167 (13%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-KSFIIIDTGGFEPE 63
+VL+G VGK++L R ++ GK + I DT G +
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG---Q 62
Query: 64 VKKGIMHEMTKQTKQAII-----------ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ 112
+ + + + I + + E I +
Sbjct: 63 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 122
Query: 113 PIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENIL 159
+ I ++E+ S+ Y SA GI+ ++
Sbjct: 123 ERHVSIQEAESYAESVGAKHYH--------TSAKQNKGIEELFLDLC 161
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 34.6 bits (78), Expect = 0.010
Identities = 15/56 (26%), Positives = 20/56 (35%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
IK +VG VGK+ L+ S Y S + + L DTA
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Score = 33.8 bits (76), Expect = 0.022
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 5/117 (4%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
V+VG VGK+ L T +A Y D + + K + E
Sbjct: 8 CVVVGDGAVGKTCLLISYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS 121
+ QT ++I ++ V PI+LV K
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFEN---VRAKWYPEVRHHCPNTPIILVGTKL 119
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 34.6 bits (78), Expect = 0.011
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V+VG GK+ L + D NY + + I + +
Sbjct: 5 IVVVGDSQCGKTALLHVFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 65 KKGIMHEMTKQTKQAIIESDI 85
+ + +I DI
Sbjct: 63 YDNVRPLSYPDSDAVLICFDI 83
Score = 32.3 bits (72), Expect = 0.055
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY 232
K+ +VG GK+ L++ + Y T ++ + FE + ++
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP--TVFENYTASFEIDTQRI 50
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 34.2 bits (77), Expect = 0.014
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
K+ +G+ +VGK++LI + ++ TY T G S E + L DTAG R
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Score = 31.9 bits (71), Expect = 0.084
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
LV +G +VGK++L R
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDS 24
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 34.2 bits (77), Expect = 0.015
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYD 212
++ +KV ++G VGKS+++ + ++ +
Sbjct: 1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNIN 34
Score = 33.1 bits (74), Expect = 0.031
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 1 MKPV-LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTG 58
++ + + L+G VGKS++ R D + G + + F+I DT
Sbjct: 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 61
Query: 59 GFE 61
G E
Sbjct: 62 GLE 64
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 34.2 bits (77), Expect = 0.015
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
K+ IVG GK+ L+ + Y + + L DTAG
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 59
Score = 31.9 bits (71), Expect = 0.078
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
LV+VG GK+ L + +
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQ 26
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 33.8 bits (76), Expect = 0.015
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDT 213
+K+AI G+ VGKS L+ L + + YD
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDP 33
Score = 31.5 bits (70), Expect = 0.11
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
L + GR VGKS L R R
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKR 26
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 34.3 bits (78), Expect = 0.018
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 30/150 (20%)
Query: 102 LITNFL---RKSGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENI 158
+I FL K+ V+VINK + + EL + + +
Sbjct: 29 IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTS--------- 79
Query: 159 LTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLL-------GENRVITY 211
+ K+ S + G VGKS+L+N++ E
Sbjct: 80 --AKTGMGIEELKEYLKGKIST------MAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQ 131
Query: 212 DTPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
TT + F++ ++DT G
Sbjct: 132 RGRHTTTTAQLLKFDFGG---YVVDTPGFA 158
Score = 28.1 bits (62), Expect = 1.5
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALV-ANYPGLTRDRHYG 43
+ G VGKS+L N + V L R RH
Sbjct: 99 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT 137
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 33.4 bits (75), Expect = 0.022
Identities = 14/115 (12%), Positives = 33/115 (28%), Gaps = 2/115 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
++L+G VGKS+L NR + + F+ + +
Sbjct: 9 VILLGDGGVGKSSLMNRYVT--NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
+ + + + + + + + + I K + VI
Sbjct: 67 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 121
Score = 33.0 bits (74), Expect = 0.032
Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 10/175 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
KV ++G VGKS+L+N + T G + + + + DTAG
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDI-NIANFIYESGRSLIVCV 300
R F + + +L +V + ++ A+ ++
Sbjct: 67 R----FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN-SFMESINHVYDS 354
NK D ++R++ + + SA N+ +F E++ V +
Sbjct: 123 NKID---ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 174
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 34.1 bits (77), Expect = 0.023
Identities = 21/141 (14%), Positives = 38/141 (26%), Gaps = 10/141 (7%)
Query: 178 HSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDT 237
+ I+V I G P VGKST I++L + D + IL D
Sbjct: 47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST----RTGGSILGDK 102
Query: 238 AGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN------ISAQDINIANFIYE 291
+ R + S + A +L + + + +
Sbjct: 103 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA 162
Query: 292 SGRSLIVCVNKWDSIIHNQRK 312
+ + + Q
Sbjct: 163 DLTDFFLVLMLPGAGDELQGI 183
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 32.7 bits (73), Expect = 0.042
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
LVL+G VGKS+L R + + G F I DT G E
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Score = 31.5 bits (70), Expect = 0.11
Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 13/167 (7%)
Query: 184 KVAIVGKPNVGKSTLINSLL-GENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
K+ ++G+ VGKS+L+ + G+ T G + + K+ + DTAG
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG--- 64
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
E++ + A I++ D S + S + +
Sbjct: 65 -------QERYHSL-APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 116
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAM-FNFISAIKLNNINSFMESI 348
+ K + + + ++ F SA N+N +I
Sbjct: 117 SGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 32.7 bits (73), Expect = 0.047
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK 230
+K +VG VGK+ L+ S + P S+ +
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYA-NDAFPEEYVPTVFDHYAVSVTVGGKQ 56
Score = 31.5 bits (70), Expect = 0.12
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
V+VG VGK+ L N
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDA 33
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 32.5 bits (73), Expect = 0.049
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI----GKKSFIIIDTGG 59
V+V VG P GKST S + N L + K +I +T
Sbjct: 16 VVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNP 75
Query: 60 FEPEVKK 66
P +
Sbjct: 76 DVPSRAR 82
Score = 26.8 bits (58), Expect = 3.9
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPG 215
V VG P GKST I L + +
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHVNRDT 47
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 32.9 bits (74), Expect = 0.055
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 178 HSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGT 216
++ ++A+VG + GKS+++ + +G + + T
Sbjct: 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
Score = 26.4 bits (57), Expect = 7.7
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLT 23
P + +VG + GKS++
Sbjct: 26 LPQIAVVGGQSAGKSSVLENFV 47
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 32.9 bits (74), Expect = 0.059
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 178 HSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRD 219
+ +++ + G P GKST + + D
Sbjct: 50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 91
Score = 26.7 bits (58), Expect = 5.1
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 3 PVLVLVGRPNVGKSTLFNRLT------NSRDALVANYPGLTRDRHYGEGYIGKKSFIIID 56
L + G P GKST + A++A P G + + +
Sbjct: 55 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARA 114
Query: 57 TGGFEPEV----KKGIMHEMTKQTKQAIIESDI-IIFIVDGRQGLVEQD 100
F V G + ++ + ++ + G E +
Sbjct: 115 EAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE 163
>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae
[TaxId: 666]}
Length = 264
Score = 32.6 bits (72), Expect = 0.069
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 382 LIRPKLRYAHQGGKNPPIIVIHG 404
L+ +L +A + P ++++HG
Sbjct: 2 LLSNQLHFAKPTARTPLVVLVHG 24
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 32.4 bits (73), Expect = 0.077
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 24/138 (17%)
Query: 110 SGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFF 169
+ ++ I K + I + D + + E+ I
Sbjct: 40 NDIQPIICITKMDLIEDQDTEDTI------------------QAYAEDYRNIGYDVYLTS 81
Query: 170 KKKEFTNIHSIEYIK---VAIVGKPNVGKSTLINSLLGENRVITYDTP---GTTRDSIKS 223
K + + I + + G+ VGKS+L+N++ E + T + G + + +
Sbjct: 82 SKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRH 141
Query: 224 LFEYNNKKYILIDTAGIR 241
+ + ++ DT G
Sbjct: 142 VELIHTSGGLVADTPGFS 159
Score = 30.1 bits (67), Expect = 0.46
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
V G+ VGKS+L N ++ + + + +I +GG
Sbjct: 101 VFAGQSGVGKSSLLNAISPELGLRT----NEISEHLGRGKHTTRHVELIHTSGGL 151
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 31.9 bits (71), Expect = 0.085
Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 10/161 (6%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
LV++G VGKS L + V Y D + + + + ++ E
Sbjct: 6 LVVLGSGGVGKSALTVQFVQ--GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV-----IN 119
+ K + + I L + + I P++LV +
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQ--STFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 120 KSENINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENIL 159
+ + + SA + +++
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162
Score = 30.3 bits (67), Expect = 0.24
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTP 214
K+ ++G VGKS L + V YD
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT 35
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 31.2 bits (69), Expect = 0.13
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
LVLVG GK+T R
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGE 27
Score = 30.8 bits (68), Expect = 0.20
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYD 212
K+ +VG GK+T + L Y
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYV 33
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 31.8 bits (72), Expect = 0.13
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRV----ITYDTPGTTRDSIKSL 224
+A G GKST+ + L + IT D S+++
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW 74
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 31.3 bits (70), Expect = 0.16
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDT 237
+ + ++G + GKSTL+ LL + I T ++ K L + + K L+D
Sbjct: 4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDR 58
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 30.6 bits (68), Expect = 0.20
Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 16/170 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF-EPE 63
++L+G P GK T +L + L R +G ++ +D G +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSEN 123
+ ++ + A FI+DG VEQ K + L + G I V+
Sbjct: 63 LTNELVDDRLNNPDAA------NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLE---- 112
Query: 124 INSSISLDFYELGI-GNPHIISALYGNGIKNFLENILTIELPYKKFFKKK 172
+ L + + I N ++ P ++++ +
Sbjct: 113 ----FRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQ 158
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 30.6 bits (68), Expect = 0.21
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 185 VAIVGKPNVGKSTLINSLLGE 205
+VG + GK+TL+ +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAA 24
Score = 28.7 bits (63), Expect = 0.89
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
M V +VG + GK+TL +
Sbjct: 1 MN-VWQVVGYKHSGKTTLMEKW 21
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 31.0 bits (70), Expect = 0.22
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLG----ENRVITYDTPGTTRDSIKSL 224
VA+VG+ GKST+ + + + I D ++ SL
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 31.2 bits (70), Expect = 0.22
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRV 208
VAIVG GKS L+N L G+ +
Sbjct: 35 VAIVGLYRTGKSYLMNKLAGKKKG 58
Score = 29.3 bits (65), Expect = 0.85
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSF--------III 55
V+ +VG GKS L N+L + G T H ++ +++
Sbjct: 34 VVAIVGLYRTGKSYLMNKLAGKKKGFSL---GSTVQSHTKGIWMWCVPHPKKPGHILVLL 90
Query: 56 DTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG 95
DT G K ++ ++ S + +
Sbjct: 91 DTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQ 130
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 30.9 bits (70), Expect = 0.23
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 19/63 (30%)
Query: 147 YGNGIKNFLENI-LTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGE 205
Y + L++I L+I +K E VA VG GKSTLIN +
Sbjct: 26 YNDNEAPILKDINLSI--------EKGET----------VAFVGMSGGGKSTLINLIPRF 67
Query: 206 NRV 208
V
Sbjct: 68 YDV 70
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 30.4 bits (67), Expect = 0.23
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 1 MKP-VLVLVGRPNVGKSTLFNRLTN---------SRDALVANYPGLTRDRHYGEGYIGKK 50
M +++L G + GKS + L + D+L+ P + G +
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADG 60
Query: 51 SFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIF 88
I + M + + II+ +
Sbjct: 61 GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGG 98
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.7 bits (68), Expect = 0.24
Identities = 32/243 (13%), Positives = 61/243 (25%), Gaps = 53/243 (21%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENR------VITYD-----TPGTTRDSIKSLFEYNN-- 229
+ V VG GK+TL + D P ++
Sbjct: 1 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIM 60
Query: 230 -----------------KKYILIDTAGIRRRNKTFEVI--------EKFSVIKTLKSILE 264
+ I R K + + E F + ++E
Sbjct: 61 REGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLME 120
Query: 265 A---NVVILLLDAQQNISAQDINIANF-----IYESGRSLIVCVNKWDSIIHNQRKIIKN 316
+V+ + D + D F G + I +NK D + +++ +
Sbjct: 121 NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRK 180
Query: 317 NIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITR----ALISAI 372
+ + + + M S+ + L S TR L +
Sbjct: 181 YFE---DIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLA 237
Query: 373 KNH 375
H
Sbjct: 238 YEH 240
Score = 29.2 bits (64), Expect = 0.89
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 4 VLVLVGRPNVGKSTLFNRLTNSRDA 28
++V VG GK+TL +
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLED 26
Score = 26.9 bits (58), Expect = 4.4
Identities = 10/110 (9%), Positives = 28/110 (25%), Gaps = 4/110 (3%)
Query: 52 FIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG-LVEQDKLITNFLRKS 110
+I +P + + + + VD E+ + +
Sbjct: 129 YISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYL 188
Query: 111 GQPIVLVINKSENINSSISLDFYELGIGNPHII--SALYGNGIKNFLENI 158
+ L + + + E+ ++ SA G ++
Sbjct: 189 TARLKLDPSMQGLMAYKMCSMMTEVL-PPVRVLYLSAKTREGFEDLETLA 237
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 30.7 bits (69), Expect = 0.29
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 184 KVAIVGKPNVGKSTLINSLLGE 205
+AI G GK++L+ +LGE
Sbjct: 64 MLAITGSTGSGKTSLLMLILGE 85
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 30.3 bits (68), Expect = 0.37
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRV 208
+ IVG+ GKSTL +
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIP 55
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 29.9 bits (67), Expect = 0.53
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRV 208
A+VG GKST+ L +
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQP 66
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.7 bits (63), Expect = 0.92
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 183 IKVAIVGKPNVGKSTLINSL 202
+K+ ++G GKST + +
Sbjct: 3 VKILLLGAGESGKSTFLKQM 22
Score = 28.3 bits (62), Expect = 1.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRD 27
++L+G GKST ++
Sbjct: 5 ILLLGAGESGKSTFLKQMRIIHG 27
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 28.7 bits (63), Expect = 0.96
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
M+ LVL+G VG+ + N L
Sbjct: 2 MRKTLVLLGAHGVGRRHIKNTL 23
Score = 27.5 bits (60), Expect = 2.0
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENR-VITYDTPGTTR 218
+ ++G VG+ + N+L+ ++ Y P TTR
Sbjct: 6 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTR 40
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 28.5 bits (62), Expect = 1.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
MK + ++ G VGKST RL
Sbjct: 1 MKKLYIITGPAGVGKSTTCKRL 22
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.4 bits (62), Expect = 1.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 5 LVLVGRPNVGKSTLFNRLTN 24
L+L+G GKST ++
Sbjct: 5 LLLLGTGESGKSTFIKQMRI 24
Score = 28.4 bits (62), Expect = 1.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN 206
+K+ ++G GKST I + +
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIH 26
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 28.4 bits (62), Expect = 1.3
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTR 218
V + G GKSTL+ L E+ + + TTR
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTR 37
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 28.5 bits (63), Expect = 1.5
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 166 KKFFKKKEFTNIHSIEY-IK----VAIVGKPNVGKSTLINSLLG 204
K FKK + + ++ I+ I+G GK+T + + G
Sbjct: 10 SKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 28.2 bits (63), Expect = 1.6
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 21/91 (23%)
Query: 185 VAIVGKPNVGKSTLINSLLG--ENRVITYDTPGTTRDSIKSLFEYN---NKKYILIDTAG 239
+ G N GKS S + + VI++ S F + K ++D A
Sbjct: 56 LVFCGPANTGKSYFGMSFIHFIQGAVISFVN-------STSHFWLEPLTDTKVAMLDDAT 108
Query: 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVIL 270
+ + + +++ L+ N + +
Sbjct: 109 ----TTCWTYFDTY-----MRNALDGNPISI 130
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 28.2 bits (62), Expect = 1.6
Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 14/153 (9%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
++ ++G GKST++ + T ++ F+ + + + D G R
Sbjct: 8 RLLLLGAGESGKSTIVKQM-------RILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDE 60
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQ----DINIANFIYESGRSLIVC 299
+ + + +++ D Q N + +I N + S+I+
Sbjct: 61 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120
Query: 300 VNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332
+NK D + K++ K + F FA +
Sbjct: 121 LNKQDLL---AEKVLAGKSKIEDYFPEFARYTT 150
Score = 27.8 bits (61), Expect = 2.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 5 LVLVGRPNVGKSTLFNRLTN 24
L+L+G GKST+ ++
Sbjct: 9 LLLLGAGESGKSTIVKQMRI 28
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.0 bits (61), Expect = 1.7
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 4/106 (3%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEG-YIGKKSFIIIDTGGFE 61
V+ ++G P GK T +L + + L R G G+ I G
Sbjct: 9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIV 68
Query: 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFL 107
P+ I + + ++++ F++DG ++Q +
Sbjct: 69 PQE---ITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI 111
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 27.6 bits (60), Expect = 2.0
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITY 211
+K+ ++G GKST++ + + T
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTG 31
Score = 27.6 bits (60), Expect = 2.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 5 LVLVGRPNVGKSTLFNRLTN 24
L+L+G GKST+ ++
Sbjct: 5 LLLLGAGESGKSTIVKQMKI 24
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.9 bits (61), Expect = 2.2
Identities = 18/137 (13%), Positives = 35/137 (25%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ GKS+LI +LL + + E + + Y ++ +
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
+E V + +L D A I +
Sbjct: 65 SRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPP 124
Query: 305 SIIHNQRKIIKNNIKKK 321
S I R++ +
Sbjct: 125 SKIELDRRLRGRGQDSE 141
Score = 26.0 bits (56), Expect = 7.6
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFI 53
+ ++ GKS+L L ++ R G + + +
Sbjct: 4 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYF 53
>d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC
{Janthinobacterium sp. J3 [TaxId: 213804]}
Length = 268
Score = 27.9 bits (60), Expect = 2.3
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 386 KLRYAHQGGKNPPIIVIHG 404
+ RY + GK P+I+IHG
Sbjct: 13 ETRY-LEAGKGQPVILIHG 30
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.8 bits (60), Expect = 2.4
Identities = 26/227 (11%), Positives = 57/227 (25%), Gaps = 12/227 (5%)
Query: 169 FKKKEFTNIHSIEYIKV-------AIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSI 221
++ N S V I+G+ GKS+L++++L +
Sbjct: 3 LERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFT 62
Query: 222 KSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISA- 280
K I R + F I +K ++ + + + ISA
Sbjct: 63 KVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAF 122
Query: 281 ----QDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336
NI + I + + + + + A
Sbjct: 123 MEKLIPYNIFLNAIYIRQGQIDAILESAREAALSKIGELASEIFAEFTEGKYSEVVVRAE 182
Query: 337 KLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLI 383
+ + + + + A A+ + L+
Sbjct: 183 ENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLL 229
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 27.8 bits (62), Expect = 2.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 185 VAIVGKPNVGKSTLINSLLG 204
+ ++G GK+T + + G
Sbjct: 35 LVLLGPSGCGKTTTLRMIAG 54
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 27.7 bits (61), Expect = 2.5
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
G + GK+TL +LL + L ++ ++ +
Sbjct: 157 WLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDV 210
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.6 bits (60), Expect = 2.5
Identities = 22/213 (10%), Positives = 56/213 (26%), Gaps = 12/213 (5%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ G+P GK++L +++ E + T F+ K Y + +
Sbjct: 35 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYS 94
Query: 245 KTFEVIEKFSVIKTLKSI-----LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVC 299
+ ++ V + + + S +
Sbjct: 95 NRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGT 154
Query: 300 VNKWDSII----HNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355
+ +++++ R K + L + ++I + +Y S
Sbjct: 155 IERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSL 214
Query: 356 IIHLSTSRITRALISAIKNHPPCRKKLIRPKLR 388
S + + N K++ R
Sbjct: 215 ETP---SISPKETLEKELNRKVSGKEIQPTLER 244
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 27.6 bits (61), Expect = 2.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 185 VAIVGKPNVGKSTLINSLLG 204
V G +GK+TL+ ++
Sbjct: 30 VNFHGPNGIGKTTLLKTIST 49
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 27.2 bits (59), Expect = 2.7
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPG 215
+ + G P GKST+ +L V
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHS 37
Score = 26.8 bits (58), Expect = 3.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 4 VLVLVGRPNVGKSTLFNRL 22
+L+L G P GKST+ L
Sbjct: 6 ILLLSGHPGSGKSTIAEAL 24
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 27.2 bits (60), Expect = 2.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 185 VAIVGKPNVGKSTLINSLLG 204
+ +VG GKSTL+ + G
Sbjct: 28 LHLVGPNGAGKSTLLARMAG 47
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 27.2 bits (60), Expect = 3.1
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 185 VAIVGKPNVGKSTLINSLLG 204
+ ++G GK+T + + G
Sbjct: 32 MILLGPSGCGKTTTLRMIAG 51
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 27.2 bits (60), Expect = 3.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 185 VAIVGKPNVGKSTLINSLLG 204
I+G GKSTLIN + G
Sbjct: 33 TLIIGPNGSGKSTLINVITG 52
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.3 bits (59), Expect = 3.2
Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL-----TNSRDALVANYPGLTRDRHYGEGYIGKKSFIII 55
MK + ++ G P VGKST+ ++ + + NY GY + +
Sbjct: 1 MK-IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRK 59
Query: 56 DTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGR 93
+ + +++ + ++ + +
Sbjct: 60 LSVEKQKKLQIDAAKGIAEEARAG--GEGYLFIDTHAV 95
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.3 bits (59), Expect = 3.2
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 4 VLVLVGRPNVGKSTL 18
V LV GKS L
Sbjct: 31 VGALVSPGGAGKSML 45
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.4 bits (59), Expect = 3.4
Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 3/131 (2%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
P+ +++G GKS++ N + Y L + YI K F++
Sbjct: 29 APITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRKFEERNYISYKDFLLELQKEIN 85
Query: 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS 121
VK+ + Q I+ I R+ + L+ +F + S +++V++++
Sbjct: 86 KLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEA 145
Query: 122 ENINSSISLDF 132
+ + ++
Sbjct: 146 QELVKLRGVNL 156
Score = 26.2 bits (56), Expect = 8.0
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 166 KKFF-KKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITY 211
K FF ++KE + + ++G GKS++I + E +
Sbjct: 12 KDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYI 58
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 26.8 bits (58), Expect = 3.7
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
M + +VG G +T+ L
Sbjct: 1 MTEPIFMVGARGCGMTTVGREL 22
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.2 bits (60), Expect = 3.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYD 212
V VG GKSTL+ + G + + D
Sbjct: 29 VVFVGPSGCGKSTLLRMIAGLETITSGD 56
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.9 bits (59), Expect = 3.9
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 185 VAIVGKPNVGKSTLINSLLG 204
I+G GK+ + + G
Sbjct: 29 FVILGPTGAGKTLFLELIAG 48
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 27.2 bits (60), Expect = 3.9
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRV 208
V ++G GK+T ++++ G R
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRA 58
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 26.9 bits (59), Expect = 3.9
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 185 VAIVGKPNVGKSTLINSLLG 204
++G GKS + + G
Sbjct: 27 CVLLGPTGAGKSVFLELIAG 46
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
Length = 157
Score = 26.5 bits (58), Expect = 4.2
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS----- 121
G E ++ + I ++ R + L S + ++ V++++
Sbjct: 19 GSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAK-VITVLDRTKEPGA 77
Query: 122 --ENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFT 175
+ + + F E G P I++ YG G K F ++ KK FT
Sbjct: 78 PGDPLYLDVCSAFVERGEAMPKILAGRYGLGSKEFSPAMVKSVYDNMSGAKKNHFT 133
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 26.5 bits (57), Expect = 4.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 4 VLVLVGRPNVGKSTLFNRL 22
+ VL+G GKS + + +
Sbjct: 8 IYVLMGVSGSGKSAVASEV 26
>d1ji1a2 b.71.1.1 (A:555-637) Maltogenic amylase {Thermoactinomyces
vulgaris, TVAI [TaxId: 2026]}
Length = 83
Score = 25.2 bits (55), Expect = 4.6
Identities = 6/60 (10%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 106 FLRKSGQPIVLV-INKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELP 164
+ R + V +N + ++++ ++L + N ++ ++T+ +
Sbjct: 16 YGRFDNVNRIAVVLNNDSV-SHTVNVPVWQLSMPNGSTVTDKITGHSYTVQNGMVTVAVD 74
>d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed
(Calystegia sepium) [TaxId: 47519]}
Length = 151
Score = 26.4 bits (58), Expect = 4.6
Identities = 10/91 (10%), Positives = 29/91 (31%)
Query: 141 HIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLIN 200
+ I+ + + + ++ +T+ E NI + EY+ + ++
Sbjct: 40 NPIALTFSSTKADGSKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLR 99
Query: 201 SLLGENRVITYDTPGTTRDSIKSLFEYNNKK 231
S+ + + G + S +
Sbjct: 100 SITFTTNLKAHGPYGQKVGTPFSSANVVGNE 130
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 26.7 bits (59), Expect = 4.7
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 185 VAIVGKPNVGKSTLINSLLGENR 207
++I+G GKST + + +
Sbjct: 31 ISIIGSSGSGKSTFLRCINFLEK 53
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 26.6 bits (57), Expect = 5.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 184 KVAIVGKPNVGKSTLINSL 202
VAI+G + GKS L+N L
Sbjct: 9 TVAILGGESSGKSVLVNKL 27
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 26.8 bits (58), Expect = 5.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 184 KVAIVGKPNVGKSTL 198
+VAI GK +GKST
Sbjct: 3 QVAIYGKGGIGKSTT 17
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 26.4 bits (57), Expect = 5.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 185 VAIVGKPNVGKSTLINSLLGEN 206
+ I G GKSTL+ L E
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEY 25
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 26.4 bits (57), Expect = 5.3
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIID 56
+ P ++L G P VGK+TL L + N L R+ +GY + I+D
Sbjct: 3 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILD 58
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 88
Score = 25.2 bits (55), Expect = 5.5
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 232 YILI--DTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFI 289
LI D RN+ E ++K + + S+ ++ L + N
Sbjct: 3 LYLIFYDITDDNLRNRVAEFLKKKGLDRIQYSVFMGDLNSSRLKDVEAGLKIIGNRKKLQ 62
Query: 290 YESGRSLI---VCVNKWDSII 307
+ ++ + N++ I
Sbjct: 63 EDERFFILIVPITENQFRERI 83
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 26.5 bits (58), Expect = 5.7
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 183 IKVAIVGKPNVGKSTLINSL---LGENRVITYDTP 214
++V I G +GK+T L + ++ P
Sbjct: 5 LRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP 39
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 26.4 bits (57), Expect = 5.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVIT 210
VA+VG GK+TL +LL +
Sbjct: 5 VALVGHAGSGKTTLTEALLYKTGAKE 30
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.1 bits (56), Expect = 6.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 185 VAIVGKPNVGKSTLINSLLGE 205
V + G P VGK+TLI+
Sbjct: 4 VFLTGPPGVGKTTLIHKASEV 24
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of
SecA {Bacillus subtilis [TaxId: 1423]}
Length = 210
Score = 26.4 bits (57), Expect = 6.2
Identities = 14/120 (11%), Positives = 36/120 (30%), Gaps = 3/120 (2%)
Query: 300 VNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHL 359
+ ++D ++ QR++I K++ + I + + + +
Sbjct: 26 LLQYDDVLRQQREVI---YKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEW 82
Query: 360 STSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYIGNDYKRYLE 419
+ + + + K I K II + + + G + R E
Sbjct: 83 KLDGLVDLINTTYLDEGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFE 142
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 26.4 bits (57), Expect = 6.2
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 5/108 (4%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRD----ALVANYPGLTRDRHYGEGYIGKKSFIIIDTG 58
V +L G GK+TL + N + A++ N G G + + G
Sbjct: 4 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQ-IKTLTNG 62
Query: 59 GFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNF 106
+ + + +V G+ + +I F
Sbjct: 63 CICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTF 110
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 26.5 bits (58), Expect = 6.2
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 185 VAIVGKPNVGKSTLINSLLG 204
++G GK+T + +
Sbjct: 31 FGLIGPNGAGKTTTLRIIST 50
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.1 bits (56), Expect = 6.9
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 185 VAIVGKPNVGKSTLINSLLGEN 206
V + G VGKST++ L
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERI 26
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.4 bits (57), Expect = 7.1
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 185 VAIVGKPNVGKSTLINSLLGE-----NRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
+ + G GKS L+ L +R++ D G D + + D
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG---DMLSKFGRDKDIILNPYDQRT 109
Query: 240 IR 241
Sbjct: 110 KG 111
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 26.3 bits (56), Expect = 7.8
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 10/69 (14%)
Query: 137 IGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKS 196
GN + L KN+L N + K K + + G P +GK+
Sbjct: 17 CGNKGSVMKL-----KNWLANWENSKKNSFKHAGKDGSGVFRAA-----MLYGPPGIGKT 66
Query: 197 TLINSLLGE 205
T + + E
Sbjct: 67 TAAHLVAQE 75
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 25.7 bits (55), Expect = 8.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 3 PVLVLVGRPNVGKSTLFNRL 22
P VLVG P GKST+ RL
Sbjct: 2 PKAVLVGLPGSGKSTIGRRL 21
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 25.6 bits (56), Expect = 9.8
Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 11/111 (9%)
Query: 173 EFTNIH----SIEYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEY 227
E ++H I + V I G VGKS L+ R+I D + +++
Sbjct: 1 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGA 60
Query: 228 NNKKY-ILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN 277
L++ G+ + + ++ ++++ L + +
Sbjct: 61 APPILSHLLEIRGLGIID-----VMNLFGAGAVREDTTISLIVHLENWTPD 106
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 25.7 bits (55), Expect = 9.8
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+VL+G P GK T L A + R + +G ++ I+D GG +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDD 64
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
M + A FI+DG + Q + + L++ G P+ I
Sbjct: 65 IMVNMIKDELTNNPACKN----GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIE 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.393
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,554,927
Number of extensions: 75658
Number of successful extensions: 744
Number of sequences better than 10.0: 1
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 309
Length of query: 419
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 331
Effective length of database: 1,199,356
Effective search space: 396986836
Effective search space used: 396986836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.5 bits)