BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17090
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 173/315 (54%), Positives = 232/315 (73%), Gaps = 7/315 (2%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
MYSF+D LNG+NL+LRPE TA+V+R+ IE+N++YDGPKRLWY GPMFRHERPQ GRYRQF
Sbjct: 94 MYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQF 153
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIK 120
+Q+GVEA+GF GPD DAE+++MC RLW++L L I LE+NS+G ER + ++LI Y++
Sbjct: 154 HQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 213
Query: 121 KHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKIL 180
+H D +D + LY N LRVLD+KN ++EI+ NAPKL+D+L S HF G+Q++L
Sbjct: 214 QHADK--LDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQRLL 271
Query: 181 NYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASG 240
NN+ + IN +LVRG+DYYN TVFEW TDKLG+Q ++ GGRYD LI++ K A G
Sbjct: 272 KANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACG 331
Query: 241 FAIGIERLIELIKKININHNFSHQ--CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNC 298
+A+GIER++EL+K+ H Q D+Y+VH G A +AF+++E LR GL VIL+C
Sbjct: 332 WAMGIERILELLKE---EHLVPEQEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHC 388
Query: 299 VFNNIHESFKSQMKR 313
+ SFKSQMKR
Sbjct: 389 SADGAGASFKSQMKR 403
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 317 bits (813), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 159/358 (44%), Positives = 224/358 (62%), Gaps = 11/358 (3%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
MY+F D NGD+L+LRPEGTA +R+ IE+ L+Y+ +RLWY GPMFRHERPQ GRYRQF
Sbjct: 74 MYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQF 132
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL-KNICLELNSIGNFNERKKYCIDLINYI 119
+Q+G E G GPDIDAELI++ +R W+ L + +++ LELNSIG+ R Y L+ ++
Sbjct: 133 HQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFL 192
Query: 120 KKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKI 179
++HK+ ED K +Y N LRVLDSKN ++ +L +AP L DYL+++S +HF G+ K+
Sbjct: 193 EQHKEK--LDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKL 250
Query: 180 LNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPAS 239
L I+Y +N +LVRG+DYYNRTVFEW T+ LGSQ ++C GGRYD L+++ + PA
Sbjct: 251 LESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV 310
Query: 240 GFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRT--LGLKVILN 297
GFA+G+ERL+ L++ +N DIY+V G + + A L+E LR G+K++ N
Sbjct: 311 GFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTN 370
Query: 298 CVFNNIHESFKSQMKRXXXXXXXXXXXXXXXXXXXXXXXXKDLRNKYEDPTLKQISIS 355
N FK Q R KDLR+ E + Q S++
Sbjct: 371 HGGGN----FKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSG-EQTAVAQDSVA 423
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 317 bits (813), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 159/358 (44%), Positives = 224/358 (62%), Gaps = 11/358 (3%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
MY+F D NGD+L+LRPEGTA +R+ IE+ L+Y+ +RLWY GPMFRHERPQ GRYRQF
Sbjct: 67 MYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQF 125
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL-KNICLELNSIGNFNERKKYCIDLINYI 119
+Q+G E G GPDIDAELI++ +R W+ L + +++ LELNSIG+ R Y L+ ++
Sbjct: 126 HQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFL 185
Query: 120 KKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKI 179
++HK+ ED K +Y N LRVLDSKN ++ +L +AP L DYL+++S +HF G+ K+
Sbjct: 186 EQHKEK--LDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKL 243
Query: 180 LNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPAS 239
L I+Y +N +LVRG+DYYNRTVFEW T+ LGSQ ++C GGRYD L+++ + PA
Sbjct: 244 LESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV 303
Query: 240 GFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRT--LGLKVILN 297
GFA+G+ERL+ L++ +N DIY+V G + + A L+E LR G+K++ N
Sbjct: 304 GFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTN 363
Query: 298 CVFNNIHESFKSQMKRXXXXXXXXXXXXXXXXXXXXXXXXKDLRNKYEDPTLKQISIS 355
N FK Q R KDLR+ E + Q S++
Sbjct: 364 HGGGN----FKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSG-EQTAVAQDSVA 416
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 317 bits (812), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 159/358 (44%), Positives = 224/358 (62%), Gaps = 11/358 (3%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
MY+F D NGD+L+LRPEGTA +R+ IE+ L+Y+ +RLWY GPMFRHERPQ GRYRQF
Sbjct: 66 MYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQF 124
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL-KNICLELNSIGNFNERKKYCIDLINYI 119
+Q+G E G GPDIDAELI++ +R W+ L + +++ LELNSIG+ R Y L+ ++
Sbjct: 125 HQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFL 184
Query: 120 KKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKI 179
++HK+ ED K +Y N LRVLDSKN ++ +L +AP L DYL+++S +HF G+ K+
Sbjct: 185 EQHKEK--LDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKL 242
Query: 180 LNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPAS 239
L I+Y +N +LVRG+DYYNRTVFEW T+ LGSQ ++C GGRYD L+++ + PA
Sbjct: 243 LESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV 302
Query: 240 GFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRT--LGLKVILN 297
GFA+G+ERL+ L++ +N DIY+V G + + A L+E LR G+K++ N
Sbjct: 303 GFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTN 362
Query: 298 CVFNNIHESFKSQMKRXXXXXXXXXXXXXXXXXXXXXXXXKDLRNKYEDPTLKQISIS 355
N FK Q R KDLR+ E + Q S++
Sbjct: 363 HGGGN----FKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSG-EQTAVAQDSVA 415
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 180/293 (61%), Gaps = 10/293 (3%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQYGRYRQ 59
M++F D G +L+LRPEGTA+++R+ +E+ + ++ P RLW +GPMFR ERPQ GRYRQ
Sbjct: 65 MFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQ 123
Query: 60 FYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYI 119
F+Q+ EA+G P +DAE +++ K L L+ + ++L+S+G+ +R +Y L +
Sbjct: 124 FHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVL 183
Query: 120 KKHKDSKWFCEDIKHSLYLNSLRVLDSKN----LIIREILINAPKLLDYLEKDSLDHFYG 175
H+++ ED K L N +R+LDSK+ +++E+ + +LD+L +++ H
Sbjct: 184 SPHREA--LSEDSKERLEENPMRILDSKSERDQALLKELGVR--PMLDFLGEEARAHLKE 239
Query: 176 IQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKF 235
+++ L ++ Y++ LVRG+DYY RT FE +++G+Q+++ GGGRYD L +
Sbjct: 240 VERHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPR 299
Query: 236 VPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLR 288
VP GFA G+ER+ ++ D+Y++ + +EA +AF L+E LR
Sbjct: 300 VPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALR 352
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 190/321 (59%), Gaps = 18/321 (5%)
Query: 1 MYSFIDELNGD-NLSLRPEGTASVIRSVIENNLI--YDGPKRLWYSGPMFRHERPQYGRY 57
MY+F D+ GD +++LRPEGTA+V+RS IE+ + + P +L+Y+GPMFR+ER Q GRY
Sbjct: 64 MYTFKDK--GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRY 121
Query: 58 RQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLIN 117
RQF Q GVEAIG P +DAE++ M ++++ LK++ L +NS+G+ RK+Y L+
Sbjct: 122 RQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVK 181
Query: 118 YIKK--HKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYG 175
+ + H+ FC D + L+ + +R+LD K +E + AP++ D+L ++S ++
Sbjct: 182 HFEPVIHE----FCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQ 237
Query: 176 IQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKL---GSQNSICGGGRYDFLIKKFS 232
++ L+ I Y + LVRG+DYY T FE D G+ ++CGGGRY+ L++
Sbjct: 238 VKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLD 297
Query: 233 NKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGL 292
GFA+ IERL+ +++ I + D++IV +G +A+ A L +LR G+
Sbjct: 298 GPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGI 357
Query: 293 KVILNCVFNNIHESFKSQMKR 313
K + + I K QMK+
Sbjct: 358 KADKDYLQRKI----KGQMKQ 374
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 135/285 (47%), Gaps = 18/285 (6%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGP-MFRHERPQYGRYRQ 59
YSF+D+ G ++L PE T S +R V + P R WYS P ++R+E PQ GRYR+
Sbjct: 65 TYSFVDK-GGREVTLIPEATPSTVRXVTSRKDLQR-PLR-WYSFPKVWRYEEPQAGRYRE 121
Query: 60 FYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNIC-LELNS-------IGNFNERKKY 111
YQ + G P+ DAE+I + S + L L++I + +NS IG +
Sbjct: 122 HYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRINSRKIXEEIIGGXTSSDPF 181
Query: 112 CI-DLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSL 170
+ +I+ + HK S+ D S + V +L I+ + + +
Sbjct: 182 SVFSIID--RYHKISREEFVDQLRSAGIGEDGVSXIADLCSGTRGIDEXARITGKSSEEI 239
Query: 171 DHFYGIQKIL-NYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIK 229
++ +L +Y + + + +VRG+ YY VFE D+ G +I GGGRYD L
Sbjct: 240 ARXAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFE-AYDRSGQFRAILGGGRYDNLAS 298
Query: 230 KFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGK 274
S + VPA GF G + L+K+ N+ + +YI VGK
Sbjct: 299 LXSGESVPAVGFGXGDAVISLLLKRENVQIPREKKS-VYICRVGK 342
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 143/307 (46%), Gaps = 22/307 (7%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPM-FRHERPQYGRYRQ 59
M++FI + G ++LRPE T S+ R ++ P + WYS P +R+E GR R+
Sbjct: 88 MFNFITK-GGHRVALRPEMTPSLARLLLGKGRSLLLPAK-WYSIPQCWRYEAITRGRRRE 145
Query: 60 FYQIGVEAIGFPGPDIDAELIIMCSRLWK----NLNLKNICLELNS---IGNFNERKKYC 112
YQ ++ +G + AE+ ++C+ W L+ K++ +++NS + E+
Sbjct: 146 HYQWNMDIVGVK--SVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQAGVT 203
Query: 113 IDLINYIKKHKD--SKWFCEDIKHSLYLNSLR--VLDS--KNLIIREILINAPKLLDYLE 166
D + D K E+++ L + L V+D+ L ++ I A ++ + E
Sbjct: 204 SDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEEHE 263
Query: 167 K-DSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYD 225
L F+ + Y + + +VRG+ YY VFE D+ G ++CGGGRYD
Sbjct: 264 AVKELRQFFEQVEAYGYGDWVL-FDASVVRGLAYYTGIVFE-GFDREGKFRALCGGGRYD 321
Query: 226 FLIKKF-SNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLS 284
L+ + S +P +GF G ++EL+++ + + H D ++ + A +
Sbjct: 322 NLLTTYGSPTPIPCAGFGFGDCVIVELLQEKRLLPDIPHVVDDVVIPFDESMRPHALAVL 381
Query: 285 ENLRTLG 291
LR G
Sbjct: 382 RRLRDAG 388
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 139/293 (47%), Gaps = 26/293 (8%)
Query: 46 MFRHERPQYGRYRQFYQIGVEAIGFPGPDI--DAELIIMCSRLWKNLNLKNICLELNS-- 101
+FR ER + GR+RQF Q ++ +G + DA+ + + +++ +N+ + + +N+
Sbjct: 129 VFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQXPAIITEIFEAVNIGDFVIRINNRK 188
Query: 102 --IG-----NFNERK-KYCIDLINYIKKHKDSKWFCEDIKHSL-YLNSLRVLDSKNL--I 150
G N +E + K CI +I+ ++K ++K E K + + +++D +
Sbjct: 189 VLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGS 248
Query: 151 IREILINAPKLLDYLEKDSLDHFYGIQKI---------LNYNNISYKINTKLVRGMDYYN 201
+ ++L + K L +S G+ ++ L + + I+ + RG++YY
Sbjct: 249 VDDVL-DKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYT 307
Query: 202 RTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIE-LIKKININHN 260
TV+E T + SIC GGRY+ L+ F + P G +IG+ RLI L+K +N
Sbjct: 308 GTVYETTLIGHEALGSICSGGRYEELVGTFIGEKXPGVGISIGLTRLISRLLKAGILNTL 367
Query: 261 FSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR 313
+ +V+ E +S+ LR GL VI N + + F++ K+
Sbjct: 368 PPTPAQVVVVNXQDELXPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQ 420
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
pdb|3OD1|B Chain B, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
Length = 400
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 133/322 (41%), Gaps = 46/322 (14%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
++ +D+ G+ L LRP+ TA + R V + P RL Y ++R ++ + G+ +F
Sbjct: 68 LFKLLDQ-QGNTLVLRPDXTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEF 126
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFN-------------- 106
Q+GVE IG D E+I + K L + + +G N
Sbjct: 127 EQLGVELIGDGTASADGEVIALXIAALKRAGLSEFKVAIGHVGYVNALLXDVVGNEQRAD 186
Query: 107 --ERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLR-----VLDSKNLIIRE----IL 155
R Y + + Y + K D L SLR + +++ LI E L
Sbjct: 187 RLRRFLYEKNYVGYREHVKSLNLSTIDKSRLXNLLSLRGGRAAIEEARGLIQTEKGKTAL 246
Query: 156 INAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQ 215
KL + LE YG + + K + LV YY VFE ++LG
Sbjct: 247 AEXTKLYEVLES------YGASEYV-------KFDLTLVLHXSYYTGVVFEGYGNRLGV- 292
Query: 216 NSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKE 275
+C GGRYD L+ KF ++ A+GF + I+ L+E + I++ C ++ E
Sbjct: 293 -PLCSGGRYDELLSKF-HRPAQATGFGVRIDLLVEALNGEIISNGHEQTCILF----SNE 346
Query: 276 AELKAFVLSENLRTLGLKVILN 297
+A L+ R G V+L
Sbjct: 347 RRFEAIELARKKRANGEAVVLQ 368
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 139/307 (45%), Gaps = 22/307 (7%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPM-FRHERPQYGRYRQ 59
M++FI + G ++LRPE T S+ R ++ P + WYS P +R+E GR R+
Sbjct: 88 MFNFITK-GGHRVALRPEMTPSLARQLLAKGRSLLLPAK-WYSIPQCWRYEAITRGRRRE 145
Query: 60 FYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL--KNICLELNS---IGNFNERKKYCID 114
YQ ++ IG + EL+ ++L L K++ +++NS + E+ D
Sbjct: 146 HYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQTVVEQAGVSAD 205
Query: 115 -------LINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEK 167
+++ ++K + + L N + + S L ++ I A ++ + E
Sbjct: 206 KFAPVCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITS-TLSLKTIDEIAQRIGEEHEA 264
Query: 168 -DSLDHFYGIQKILNYNNISYKI-NTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYD 225
L F I +I Y + I + +VRG+ YY VFE D+ G+ ++CGGGRYD
Sbjct: 265 VRELRDF--ITQIEAYGFGDWVIFDASVVRGLAYYTGIVFE-GFDRDGNFRALCGGGRYD 321
Query: 226 FLIKKF-SNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLS 284
L+ + S VP GF G ++EL+ + + H D ++ + A +
Sbjct: 322 NLLTTYGSPTAVPCVGFGFGDCVIVELLNEKKLLPELHHVVDDLVIPFDETMRPHALSIL 381
Query: 285 ENLRTLG 291
LR G
Sbjct: 382 RRLRDAG 388
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 54/295 (18%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQY--GRYR 58
+Y D+ G+ LSLR + T R + N L KR ++ ++R + P GRYR
Sbjct: 72 IYDLKDQ-GGELLSLRYDLTVPFARYLAMNKLT--NIKR-YHIAKVYRRDNPAMTRGRYR 127
Query: 59 QFYQIGVEAIGFPGPDI-DAE-LIIMCSRLWKNLNLKNICLELN---------SIGNFNE 107
+FYQ + G P I DAE L IMC + +L + + +++N +I ++
Sbjct: 128 EFYQCDFDIAGNFDPMIPDAECLKIMCE-ILSSLQIGDFLVKVNDRRILDGMFAICGVSD 186
Query: 108 RKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLI-----------IREILI 156
K I + + K W E++K+ + + + I + E L+
Sbjct: 187 SKFRTI--CSSVDKLDKVSW--EEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLL 242
Query: 157 NAPKLLDYLEKDSLDHFYGIQKILNY-------NNISYKINTKLVRGMDYYNRTVFE--- 206
PKL K +L+ ++ + Y + IS+ ++ L RG+DYY ++E
Sbjct: 243 QDPKLSQ--NKQALEGLGDLKLLFEYLTLFGIDDKISFDLS--LARGLDYYTGVIYEAVL 298
Query: 207 -WTTDKLGSQ----NSICGGGRYDFLIKKFSNKF--VPASGFAIGIERLIELIKK 254
T + G + S+ GGRYD L+ F K VP G +IG+ER+ ++++
Sbjct: 299 LQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 353
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 54/295 (18%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQY--GRYR 58
+Y D+ G+ LSLR + T R + N L KR ++ ++R + P GRYR
Sbjct: 125 IYDLKDQ-GGELLSLRYDLTVPFARYLAMNKLT--NIKR-YHIAKVYRRDNPAMTRGRYR 180
Query: 59 QFYQIGVEAIGFPGPDI-DAE-LIIMCSRLWKNLNLKNICLELN---------SIGNFNE 107
+FYQ + G P I DAE L IMC + +L + + +++N +I ++
Sbjct: 181 EFYQCDFDIAGNFDPMIPDAECLKIMCE-ILSSLQIGDFLVKVNDRRILDGMFAICGVSD 239
Query: 108 RKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLI-----------IREILI 156
K I + + K W E++K+ + + + I + E L+
Sbjct: 240 SKFRTI--CSSVDKLDKVSW--EEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLL 295
Query: 157 NAPKLLDYLEKDSLDHFYGIQKILNY-------NNISYKINTKLVRGMDYYNRTVFE--- 206
PKL K +L+ ++ + Y + IS+ ++ L RG+DYY ++E
Sbjct: 296 QDPKLSQ--NKQALEGLGDLKLLFEYLTLFGIDDKISFDLS--LARGLDYYTGVIYEAVL 351
Query: 207 -WTTDKLGSQ----NSICGGGRYDFLIKKFSNKF--VPASGFAIGIERLIELIKK 254
T + G + S+ GGRYD L+ F K VP G +IG+ER+ ++++
Sbjct: 352 LQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQ 406
>pdb|1Z7M|A Chain A, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|B Chain B, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|C Chain C, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|D Chain D, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7N|A Chain A, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|B Chain B, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|C Chain C, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|D Chain D, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
Length = 344
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 115/265 (43%), Gaps = 47/265 (17%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
M+ FI G +++LR + T ++R + + + R Y G +FR E+ GR +
Sbjct: 84 MFQFIKH-EGQSITLRYDFTLPLVR--LYSQIKDSTSARYSYFGKIFRKEKRHKGRSTEN 140
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCID------ 114
YQIG+E G + E++ + ++ + L L E+ S F +R D
Sbjct: 141 YQIGIELFGESADKSELEILSLALQVIEQLGLNKTVFEIGS-AKFFQRLCQLADGSTELL 199
Query: 115 -----------LINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIR---EILINA-P 159
L +I+K+ SK +K N L L+ NL+ ++LI++
Sbjct: 200 TELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFITNELSRLE--NLVTNTKDDVLISSFD 257
Query: 160 KLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSIC 219
+L ++ EK S+ I+ I+ I+ +V MDYY +F+ + + I
Sbjct: 258 QLKEFSEKLSM-----IKPII--------IDLGMVPKMDYYTDLMFKAYSS--AANQPIL 302
Query: 220 GGGRYDFLIKKFSNKFVPASGFAIG 244
GGRYD L+ F + FAIG
Sbjct: 303 SGGRYDQLLSNFQEE-----AFAIG 322
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 373
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 118/282 (41%), Gaps = 41/282 (14%)
Query: 9 NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRH-ERPQY-----GRYRQFYQ 62
GD ++LRPE T S+ R P R Y ++R + P G+ + Q
Sbjct: 89 GGDAVALRPEMTPSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQ 148
Query: 63 IGVEAIGFPGP-DIDAELIIMCSRLWKNLNLKN----------ICLELNSIG---NFNER 108
+G+E IG D+D +++ + +++ + L+++G + +
Sbjct: 149 VGIERIGEEASVDVDMDVLRLLHEASAAAGVRHHRIVVSHARLVPRLLDALGISASLSRA 208
Query: 109 KKYCIDLINYIKKHKDSKWFCEDIKH-SLYLNSLRVLDSKNLIIREILINAPKLLDYLEK 167
C+ NY++ + W K L N L ++ + + + L+ L +
Sbjct: 209 FLACLTSGNYVQFRE--LWQLHAAKDVDLLANLLTWSPAERDAAKRSREASDRELEALLR 266
Query: 168 DSLD------------HFYGIQKILNYNNISYKINT---KLVRGMDYYNRTVFEWTTDKL 212
D++D + + + L+ + ++ + T L R +DYY VFE +
Sbjct: 267 DAVDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDYYTGLVFEMFAPGV 326
Query: 213 GSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKK 254
G+ I GGRYD L+ +F PA GFA +ER++ +++
Sbjct: 327 GA--PIAQGGRYDELLAQF-GAGAPAVGFAFEVERVMAVLEA 365
>pdb|2V3D|A Chain A, Acid-Beta-Glucosidase With N-Butyl-Deoxynojirimycin
pdb|2V3D|B Chain B, Acid-Beta-Glucosidase With N-Butyl-Deoxynojirimycin
pdb|2V3E|A Chain A, Acid-Beta-Glucosidase With N-Nonyl-Deoxynojirimycin
pdb|2V3E|B Chain B, Acid-Beta-Glucosidase With N-Nonyl-Deoxynojirimycin
pdb|2V3F|A Chain A, Acid-Beta-Glucosidase Produced In Carrot
pdb|2V3F|B Chain B, Acid-Beta-Glucosidase Produced In Carrot
pdb|2VT0|A Chain A, X-Ray Structure Of A Conjugate With
Conduritol-Beta-Epoxide Of Acid-Beta-Glucosidase
Overexpressed In Cultured Plant Cells
pdb|2VT0|B Chain B, X-Ray Structure Of A Conjugate With
Conduritol-Beta-Epoxide Of Acid-Beta-Glucosidase
Overexpressed In Cultured Plant Cells
pdb|2WCG|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With N-Octyl(
Cyclic Guanidine)-Nojirimycin In The Active Site
pdb|2WCG|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With N-Octyl(
Cyclic Guanidine)-Nojirimycin In The Active Site
pdb|2XWD|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6o-(N'-(N- Octyl)imino)nojirimycin In The Active Site
pdb|2XWD|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6o-(N'-(N- Octyl)imino)nojirimycin In The Active Site
pdb|2XWE|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6s-(N'-(N- Octyl)imino)-6-Thionojirimycin In The
Active Site
pdb|2XWE|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6s-(N'-(N- Octyl)imino)-6-Thionojirimycin In The
Active Site
Length = 505
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70
NL+L PEG + +R+ +++ +I D K +Y PMF H G + +F G + +G
Sbjct: 384 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYH----LGHFSKFIPEGSQRVGL 438
>pdb|1OGS|A Chain A, Human Acid-Beta-Glucosidase
pdb|1OGS|B Chain B, Human Acid-Beta-Glucosidase
pdb|1Y7V|A Chain A, X-ray Structure Of Human Acid-beta-glucosidase Covalently
Bound To Conduritol B Epoxide
pdb|1Y7V|B Chain B, X-ray Structure Of Human Acid-beta-glucosidase Covalently
Bound To Conduritol B Epoxide
pdb|2F61|A Chain A, Crystal Structure Of Partially Deglycosylated Acid
Beta-Glucosidase
pdb|2F61|B Chain B, Crystal Structure Of Partially Deglycosylated Acid
Beta-Glucosidase
pdb|2J25|A Chain A, Partially Deglycosylated Glucoceramidase
pdb|2J25|B Chain B, Partially Deglycosylated Glucoceramidase
pdb|2NSX|A Chain A, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|B Chain B, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|C Chain C, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|D Chain D, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NT0|A Chain A, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|B Chain B, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|C Chain C, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|D Chain D, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT1|A Chain A, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|B Chain B, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|C Chain C, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|D Chain D, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|3GXD|A Chain A, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|B Chain B, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|C Chain C, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|D Chain D, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXF|A Chain A, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|B Chain B, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|C Chain C, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|D Chain D, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXI|A Chain A, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|B Chain B, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|C Chain C, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|D Chain D, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXM|A Chain A, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|B Chain B, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|C Chain C, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|D Chain D, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3RIK|A Chain A, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|B Chain B, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|C Chain C, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|D Chain D, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|A Chain A, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|B Chain B, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|C Chain C, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|D Chain D, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
Length = 497
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70
NL+L PEG + +R+ +++ +I D K +Y PMF H G + +F G + +G
Sbjct: 382 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYH----LGHFSKFIPEGSQRVGL 436
>pdb|2WKL|A Chain A, Velaglucerase Alfa
pdb|2WKL|B Chain B, Velaglucerase Alfa
Length = 497
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70
NL+L PEG + +R+ +++ +I D K +Y PMF H G + +F G + +G
Sbjct: 382 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYH----LGHFSKFIPEGSQRVGL 436
>pdb|3KE0|A Chain A, Crystal Structure Of N370s Glucocerebrosidase At Acidic
Ph.
pdb|3KE0|B Chain B, Crystal Structure Of N370s Glucocerebrosidase At Acidic
Ph.
pdb|3KEH|A Chain A, Crystal Structure Of N370s Glucocerebrosidase Mutant At Ph
7.4
pdb|3KEH|B Chain B, Crystal Structure Of N370s Glucocerebrosidase Mutant At Ph
7.4
Length = 497
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70
NL+L PEG + +R+ +++ +I D K +Y PMF H G + +F G + +G
Sbjct: 382 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYH----LGHFSKFIPEGSQRVGL 436
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 23 VIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIM 82
+I+ +I + + GP + + + +HE+ ++G Y FY G+E G P E++
Sbjct: 61 LIKDLISSGNVGLGPIEIVHMSYLNKHEKEEFGEY--FYVTGIEVSGPAMPVEFLEVLKS 118
Query: 83 CSRLWKNLNLKNICLE---LNSIGNFNERKKYCID 114
R+ KN++ NI L N N + R +Y D
Sbjct: 119 SKRISKNIS-NNIILTYCCFNFFSNLDIRIRYDAD 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,931,321
Number of Sequences: 62578
Number of extensions: 461296
Number of successful extensions: 1263
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1210
Number of HSP's gapped (non-prelim): 29
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)