Query psy17090
Match_columns 373
No_of_seqs 180 out of 1448
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 21:36:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0124 HisS Histidyl-tRNA syn 100.0 7.6E-81 1.7E-85 602.8 38.4 353 1-366 66-427 (429)
2 CHL00201 syh histidine-tRNA sy 100.0 8.9E-71 1.9E-75 544.0 41.3 353 1-368 66-419 (430)
3 PLN02972 Histidyl-tRNA synthet 100.0 3.2E-67 6.9E-72 533.4 39.5 348 1-369 385-762 (763)
4 PLN02530 histidine-tRNA ligase 100.0 5E-66 1.1E-70 516.8 37.1 340 1-359 129-486 (487)
5 TIGR00442 hisS histidyl-tRNA s 100.0 1.9E-64 4.2E-69 496.4 38.0 336 1-343 62-397 (397)
6 PRK00037 hisS histidyl-tRNA sy 100.0 3.4E-64 7.4E-69 497.0 39.6 346 1-367 66-411 (412)
7 PRK12420 histidyl-tRNA synthet 100.0 5.5E-63 1.2E-67 488.7 34.6 334 1-359 65-422 (423)
8 KOG1936|consensus 100.0 2.8E-63 6.2E-68 462.1 28.0 352 1-369 118-517 (518)
9 PRK12292 hisZ ATP phosphoribos 100.0 2.8E-57 6E-62 443.3 33.1 312 1-340 62-390 (391)
10 PRK12421 ATP phosphoribosyltra 100.0 2.4E-54 5.2E-59 421.3 28.9 302 1-327 66-383 (392)
11 TIGR00443 hisZ_biosyn_reg ATP 100.0 4.1E-50 8.8E-55 382.2 24.3 243 1-253 52-313 (314)
12 PRK12295 hisZ ATP phosphoribos 100.0 1.6E-48 3.5E-53 376.7 25.3 243 1-251 49-370 (373)
13 PF13393 tRNA-synt_His: Histid 100.0 1.1E-48 2.4E-53 372.6 21.7 239 1-248 54-311 (311)
14 cd00773 HisRS-like_core Class 100.0 5.3E-48 1.1E-52 358.9 24.2 212 1-252 47-260 (261)
15 PRK12293 hisZ ATP phosphoribos 100.0 4.4E-44 9.6E-49 333.7 20.5 218 1-253 60-280 (281)
16 TIGR00418 thrS threonyl-tRNA s 100.0 9.4E-42 2E-46 349.3 29.1 296 1-366 246-562 (563)
17 COG3705 HisZ ATP phosphoribosy 100.0 1.6E-41 3.5E-46 322.8 18.4 301 1-327 62-380 (390)
18 PRK12444 threonyl-tRNA synthet 100.0 1E-38 2.2E-43 330.5 30.2 294 1-368 320-636 (639)
19 PRK12305 thrS threonyl-tRNA sy 100.0 1.6E-37 3.4E-42 318.7 28.6 298 1-368 252-570 (575)
20 PRK12294 hisZ ATP phosphoribos 100.0 8.4E-38 1.8E-42 288.7 21.2 208 3-232 54-267 (272)
21 PRK00413 thrS threonyl-tRNA sy 100.0 1.1E-36 2.3E-41 316.4 29.9 299 1-368 316-633 (638)
22 PRK14799 thrS threonyl-tRNA sy 100.0 1.1E-32 2.3E-37 276.9 26.9 303 1-368 214-532 (545)
23 KOG1035|consensus 100.0 1.1E-32 2.3E-37 285.5 24.4 345 2-367 973-1350(1351)
24 PRK09194 prolyl-tRNA synthetas 100.0 4.8E-30 1E-34 261.9 25.8 347 1-364 93-561 (565)
25 PLN02908 threonyl-tRNA synthet 100.0 8.5E-31 1.8E-35 272.2 19.9 301 1-368 367-683 (686)
26 PRK12325 prolyl-tRNA synthetas 100.0 6.1E-27 1.3E-31 232.0 22.6 303 1-364 93-438 (439)
27 TIGR00409 proS_fam_II prolyl-t 99.9 2.5E-25 5.4E-30 225.8 24.8 342 1-365 93-567 (568)
28 PRK04173 glycyl-tRNA synthetas 99.9 1.4E-24 3E-29 215.4 21.6 255 9-366 156-455 (456)
29 PRK03991 threonyl-tRNA synthet 99.9 2E-22 4.4E-27 205.6 29.5 298 1-368 273-593 (613)
30 PLN02837 threonine-tRNA ligase 99.9 3.9E-22 8.5E-27 205.0 28.9 299 1-368 293-609 (614)
31 TIGR00408 proS_fam_I prolyl-tR 99.9 1.6E-21 3.6E-26 194.6 22.4 270 1-367 85-381 (472)
32 PRK08661 prolyl-tRNA synthetas 99.9 1.6E-20 3.5E-25 187.8 24.2 266 1-367 91-387 (477)
33 COG0441 ThrS Threonyl-tRNA syn 99.9 6.6E-21 1.4E-25 191.2 19.9 300 1-370 266-583 (589)
34 cd00670 Gly_His_Pro_Ser_Thr_tR 99.8 7.9E-19 1.7E-23 160.5 12.0 101 1-103 48-158 (235)
35 TIGR00389 glyS_dimeric glycyl- 99.7 1.3E-15 2.9E-20 152.3 24.3 116 240-366 419-550 (551)
36 PLN02734 glycyl-tRNA synthetas 99.7 3.9E-15 8.5E-20 151.2 24.3 116 240-369 533-663 (684)
37 KOG1637|consensus 99.7 2.6E-15 5.6E-20 142.8 16.5 300 1-366 238-554 (560)
38 PRK14894 glycyl-tRNA synthetas 99.7 1.1E-14 2.3E-19 142.1 20.4 99 259-368 429-538 (539)
39 KOG2324|consensus 99.6 1.1E-15 2.3E-20 141.1 11.0 303 1-363 98-426 (457)
40 PF03129 HGTP_anticodon: Antic 99.6 5.1E-15 1.1E-19 115.7 10.7 90 266-365 1-93 (94)
41 COG0423 GRS1 Glycyl-tRNA synth 99.6 2.9E-13 6.2E-18 131.7 22.9 118 240-368 420-552 (558)
42 cd00858 GlyRS_anticodon GlyRS 99.6 3.6E-14 7.8E-19 116.3 13.3 99 258-367 20-120 (121)
43 cd00861 ProRS_anticodon_short 99.6 1.9E-14 4.1E-19 112.4 10.8 91 264-364 1-94 (94)
44 cd00860 ThrRS_anticodon ThrRS 99.5 8E-14 1.7E-18 108.0 11.7 90 264-363 1-90 (91)
45 cd00779 ProRS_core_prok Prolyl 99.5 7.2E-15 1.6E-19 135.9 5.1 104 1-106 77-187 (255)
46 cd00771 ThrRS_core Threonyl-tR 99.5 6.9E-14 1.5E-18 132.3 11.5 101 1-103 76-183 (298)
47 PRK14938 Ser-tRNA(Thr) hydrola 99.5 2.7E-13 5.8E-18 128.7 14.0 116 241-366 245-366 (387)
48 cd00862 ProRS_anticodon_zinc P 99.5 2.6E-13 5.7E-18 121.0 13.2 101 258-368 4-111 (202)
49 PF12745 HGTP_anticodon2: Anti 99.5 2.5E-13 5.4E-18 125.7 12.8 100 262-370 3-109 (273)
50 cd00738 HGTP_anticodon HGTP an 99.5 1.1E-12 2.4E-17 102.1 11.8 90 264-363 1-93 (94)
51 PF00587 tRNA-synt_2b: tRNA sy 99.4 7.4E-13 1.6E-17 115.4 10.4 104 1-105 46-156 (173)
52 cd02426 Pol_gamma_b_Cterm C-te 99.4 1.4E-11 3E-16 101.6 13.4 103 258-367 21-126 (128)
53 cd00772 ProRS_core Prolyl-tRNA 99.4 4E-12 8.7E-17 118.1 11.2 101 1-103 79-191 (264)
54 TIGR02367 PylS pyrrolysyl-tRNA 99.3 6.6E-12 1.4E-16 121.4 10.9 85 11-98 292-376 (453)
55 cd00859 HisRS_anticodon HisRS 99.3 3.4E-11 7.3E-16 92.6 10.9 89 265-363 2-90 (91)
56 COG0442 ProS Prolyl-tRNA synth 99.3 4.6E-11 9.9E-16 118.5 14.5 330 1-363 93-498 (500)
57 PTZ00326 phenylalanyl-tRNA syn 99.3 1.8E-11 4E-16 120.8 10.4 95 10-106 325-449 (494)
58 cd00774 GlyRS-like_core Glycyl 99.3 7E-12 1.5E-16 115.9 6.5 91 1-94 66-169 (254)
59 PRK04172 pheS phenylalanyl-tRN 99.2 4.2E-11 9.1E-16 120.7 9.0 91 1-97 318-408 (489)
60 PRK09537 pylS pyrolysyl-tRNA s 99.0 1.1E-09 2.3E-14 106.4 9.3 85 11-98 256-340 (417)
61 cd00768 class_II_aaRS-like_cor 98.9 8E-09 1.7E-13 92.2 10.3 92 4-98 45-141 (211)
62 KOG2298|consensus 98.8 3.9E-08 8.5E-13 94.5 10.5 119 242-370 463-595 (599)
63 cd00778 ProRS_core_arch_euk Pr 98.7 1.3E-08 2.8E-13 94.6 4.2 95 1-97 79-185 (261)
64 cd00770 SerRS_core Seryl-tRNA 98.3 1.2E-06 2.6E-11 82.9 7.6 95 1-99 98-202 (297)
65 TIGR00414 serS seryl-tRNA synt 97.9 5.1E-05 1.1E-09 75.2 9.4 95 1-99 219-323 (418)
66 KOG4163|consensus 97.9 4.9E-05 1.1E-09 72.8 8.5 102 259-369 339-450 (551)
67 PRK05431 seryl-tRNA synthetase 97.8 0.00014 3E-09 72.2 9.7 92 1-97 217-318 (425)
68 PRK09350 poxB regulator PoxA; 97.6 4.1E-05 8.9E-10 72.7 3.1 68 9-88 56-125 (306)
69 cd00496 PheRS_alpha_core Pheny 97.3 0.0022 4.7E-08 58.0 9.9 74 12-91 59-132 (218)
70 PRK00960 seryl-tRNA synthetase 97.3 0.00056 1.2E-08 68.9 6.6 89 10-98 307-402 (517)
71 cd00669 Asp_Lys_Asn_RS_core As 97.2 0.0007 1.5E-08 63.1 6.4 54 9-70 47-102 (269)
72 PF01409 tRNA-synt_2d: tRNA sy 97.1 0.0025 5.4E-08 58.6 8.9 84 10-99 78-162 (247)
73 PLN02853 Probable phenylalanyl 97.0 0.0036 7.9E-08 62.4 9.5 85 11-97 316-400 (492)
74 PLN02320 seryl-tRNA synthetase 97.0 0.0013 2.8E-08 66.0 6.4 93 9-101 284-386 (502)
75 TIGR00470 sepS O-phosphoseryl- 97.0 0.0042 9.1E-08 61.1 9.5 86 11-98 181-267 (533)
76 PLN02678 seryl-tRNA synthetase 96.9 0.0041 9E-08 61.9 8.5 96 1-99 220-327 (448)
77 TIGR00468 pheS phenylalanyl-tR 96.9 0.0056 1.2E-07 57.9 9.1 77 12-93 128-204 (294)
78 cd00777 AspRS_core Asp tRNA sy 96.7 0.0025 5.5E-08 59.7 5.3 34 38-71 70-103 (280)
79 PRK00488 pheS phenylalanyl-tRN 96.1 0.048 1E-06 52.2 10.0 82 12-100 164-246 (339)
80 TIGR00415 serS_MJ seryl-tRNA s 95.9 0.049 1.1E-06 54.6 9.4 90 11-101 308-404 (520)
81 COG0016 PheS Phenylalanyl-tRNA 94.8 0.21 4.5E-06 47.7 9.5 76 12-92 170-245 (335)
82 PRK09616 pheT phenylalanyl-tRN 94.3 0.24 5.2E-06 51.1 9.6 88 3-93 405-492 (552)
83 cd00776 AsxRS_core Asx tRNA sy 94.1 0.059 1.3E-06 51.6 4.3 34 39-72 91-125 (322)
84 TIGR00459 aspS_bact aspartyl-t 93.3 0.12 2.6E-06 53.3 5.1 34 38-71 207-240 (583)
85 PRK00476 aspS aspartyl-tRNA sy 93.0 0.13 2.8E-06 53.3 4.8 34 38-71 210-243 (588)
86 PF00152 tRNA-synt_2: tRNA syn 92.6 0.23 5E-06 47.8 5.8 57 10-72 72-129 (335)
87 PLN02903 aminoacyl-tRNA ligase 92.5 0.18 3.8E-06 52.6 5.0 34 38-71 273-306 (652)
88 cd00775 LysRS_core Lys_tRNA sy 92.3 0.25 5.4E-06 47.5 5.6 34 38-71 77-110 (329)
89 KOG2784|consensus 91.9 0.12 2.6E-06 49.2 2.6 83 12-96 308-390 (483)
90 COG0172 SerS Seryl-tRNA synthe 91.8 0.93 2E-05 44.8 8.8 92 12-105 227-332 (429)
91 COG0442 ProS Prolyl-tRNA synth 91.3 0.55 1.2E-05 47.5 6.8 103 259-370 280-391 (500)
92 PRK06253 O-phosphoseryl-tRNA s 90.8 0.95 2.1E-05 45.7 7.8 85 9-98 180-268 (529)
93 cd00769 PheRS_beta_core Phenyl 90.3 0.82 1.8E-05 40.4 6.4 87 3-92 44-139 (198)
94 COG0173 AspS Aspartyl-tRNA syn 90.3 0.23 5.1E-06 49.9 3.1 54 9-68 187-240 (585)
95 PRK05159 aspC aspartyl-tRNA sy 89.9 0.43 9.4E-06 47.7 4.7 34 38-71 203-237 (437)
96 PRK06462 asparagine synthetase 89.8 0.37 8.1E-06 46.4 4.0 33 38-70 103-138 (335)
97 TIGR00458 aspS_arch aspartyl-t 89.1 0.56 1.2E-05 46.8 4.9 34 38-71 200-234 (428)
98 PRK00484 lysS lysyl-tRNA synth 89.0 0.77 1.7E-05 46.6 5.8 34 38-71 241-274 (491)
99 PRK12820 bifunctional aspartyl 88.9 0.44 9.6E-06 50.2 4.1 34 38-71 225-258 (706)
100 PRK03932 asnC asparaginyl-tRNA 88.6 0.51 1.1E-05 47.4 4.2 47 38-88 208-255 (450)
101 TIGR00457 asnS asparaginyl-tRN 87.7 0.57 1.2E-05 47.1 3.9 34 38-71 211-245 (453)
102 PTZ00425 asparagine-tRNA ligas 86.2 1.2 2.6E-05 45.9 5.3 34 38-71 344-378 (586)
103 PRK12445 lysyl-tRNA synthetase 86.1 1.1 2.3E-05 45.8 4.8 34 38-71 253-286 (505)
104 PTZ00385 lysyl-tRNA synthetase 84.7 1.3 2.9E-05 46.2 4.8 34 38-71 302-335 (659)
105 PLN02788 phenylalanine-tRNA sy 84.3 7 0.00015 38.5 9.3 53 12-70 128-180 (402)
106 TIGR00462 genX lysyl-tRNA synt 84.0 0.35 7.6E-06 46.0 0.2 33 38-70 74-106 (304)
107 PLN02850 aspartate-tRNA ligase 83.0 0.83 1.8E-05 46.8 2.5 31 39-69 293-325 (530)
108 KOG2411|consensus 82.9 0.44 9.6E-06 47.3 0.4 33 38-70 248-280 (628)
109 PLN02502 lysyl-tRNA synthetase 82.0 1.3 2.8E-05 45.6 3.5 34 38-71 298-331 (553)
110 PTZ00417 lysine-tRNA ligase; P 81.7 2.1 4.6E-05 44.3 4.9 33 38-70 322-354 (585)
111 COG2024 Phenylalanyl-tRNA synt 81.3 0.97 2.1E-05 43.5 2.0 86 11-98 181-267 (536)
112 PTZ00401 aspartyl-tRNA synthet 81.2 1.2 2.6E-05 45.8 2.9 32 38-69 280-313 (550)
113 TIGR00499 lysS_bact lysyl-tRNA 80.7 1.5 3.3E-05 44.6 3.4 34 38-71 241-274 (496)
114 PLN02603 asparaginyl-tRNA synt 80.3 2.8 6.1E-05 43.2 5.2 33 38-70 322-355 (565)
115 PLN02221 asparaginyl-tRNA synt 80.0 2.6 5.5E-05 43.6 4.8 33 38-70 327-360 (572)
116 cd00669 Asp_Lys_Asn_RS_core As 79.0 2.9 6.3E-05 39.0 4.5 21 235-255 235-255 (269)
117 COG0017 AsnS Aspartyl/asparagi 78.7 2.3 4.9E-05 42.1 3.8 33 39-71 201-234 (435)
118 TIGR00471 pheT_arch phenylalan 78.6 12 0.00025 38.8 9.2 86 4-93 408-494 (551)
119 PLN02532 asparagine-tRNA synth 77.4 3.1 6.8E-05 43.3 4.5 33 38-70 390-423 (633)
120 PF03853 YjeF_N: YjeF-related 76.4 15 0.00033 31.5 7.9 99 263-366 24-130 (169)
121 PF00152 tRNA-synt_2: tRNA syn 76.4 3.3 7.2E-05 39.8 4.2 50 202-255 247-321 (335)
122 KOG2509|consensus 76.2 6.4 0.00014 38.8 5.9 90 3-97 233-334 (455)
123 PRK07080 hypothetical protein; 74.8 11 0.00024 35.7 7.0 94 9-103 124-220 (317)
124 PF00731 AIRC: AIR carboxylase 71.7 36 0.00079 28.7 8.7 60 265-326 1-63 (150)
125 PF03740 PdxJ: Pyridoxal phosp 70.8 23 0.00049 32.3 7.8 57 264-326 85-153 (239)
126 TIGR00470 sepS O-phosphoseryl- 70.4 23 0.0005 35.6 8.3 82 170-252 245-331 (533)
127 COG3705 HisZ ATP phosphoribosy 69.4 0.28 6.1E-06 47.8 -5.0 59 187-250 324-383 (390)
128 TIGR00559 pdxJ pyridoxine 5'-p 68.6 31 0.00068 31.3 8.2 45 277-327 109-153 (237)
129 cd00775 LysRS_core Lys_tRNA sy 68.4 6.8 0.00015 37.6 4.2 29 227-255 287-315 (329)
130 PF15640 Tox-MPTase4: Metallop 68.0 12 0.00025 30.4 4.7 36 170-205 21-63 (132)
131 cd00003 PNPsynthase Pyridoxine 67.8 33 0.00072 31.1 8.1 45 277-327 109-153 (234)
132 PLN02532 asparagine-tRNA synth 67.0 6.3 0.00014 41.1 3.9 50 203-255 545-615 (633)
133 PRK05265 pyridoxine 5'-phospha 66.5 36 0.00077 31.0 8.1 45 277-327 112-156 (239)
134 PTZ00425 asparagine-tRNA ligas 66.3 6.3 0.00014 40.8 3.7 50 203-255 498-568 (586)
135 PLN02265 probable phenylalanyl 65.6 23 0.00051 37.0 7.8 80 9-93 450-531 (597)
136 PRK02983 lysS lysyl-tRNA synth 64.5 5.7 0.00012 44.4 3.2 34 38-71 839-872 (1094)
137 PF01409 tRNA-synt_2d: tRNA sy 63.5 27 0.00059 32.1 7.0 65 184-252 155-227 (247)
138 COG0017 AsnS Aspartyl/asparagi 62.5 6.9 0.00015 38.8 3.0 40 216-255 357-417 (435)
139 cd03412 CbiK_N Anaerobic cobal 58.5 82 0.0018 25.5 8.4 22 305-326 56-77 (127)
140 cd04724 Tryptophan_synthase_al 57.6 99 0.0021 28.2 9.7 134 172-326 15-160 (242)
141 PF06506 PrpR_N: Propionate ca 56.2 53 0.0011 28.2 7.3 37 216-255 37-73 (176)
142 PRK03972 ribosomal biogenesis 55.9 1.1E+02 0.0023 27.4 9.1 69 272-343 6-74 (208)
143 COG0854 PdxJ Pyridoxal phospha 55.6 43 0.00093 30.1 6.4 57 264-326 85-153 (243)
144 COG0062 Uncharacterized conser 54.5 88 0.0019 27.8 8.4 76 265-340 50-127 (203)
145 KOG2298|consensus 53.9 2.9 6.2E-05 41.5 -1.2 61 9-71 178-246 (599)
146 TIGR01162 purE phosphoribosyla 53.6 86 0.0019 26.6 7.8 57 268-326 2-61 (156)
147 cd02071 MM_CoA_mut_B12_BD meth 53.5 1E+02 0.0022 24.7 8.1 72 243-326 37-110 (122)
148 TIGR00640 acid_CoA_mut_C methy 51.8 87 0.0019 25.7 7.5 59 265-327 3-62 (132)
149 PF02780 Transketolase_C: Tran 51.8 36 0.00079 27.2 5.2 34 264-298 9-42 (124)
150 PRK00629 pheT phenylalanyl-tRN 51.4 55 0.0012 35.5 7.9 87 4-93 531-625 (791)
151 cd00777 AspRS_core Asp tRNA sy 50.7 13 0.00028 34.9 2.6 21 235-255 246-266 (280)
152 PF13380 CoA_binding_2: CoA bi 49.0 73 0.0016 25.4 6.5 51 264-321 55-105 (116)
153 cd00776 AsxRS_core Asx tRNA sy 48.5 14 0.00031 35.3 2.6 50 203-255 238-308 (322)
154 PLN02683 pyruvate dehydrogenas 48.5 84 0.0018 30.6 8.0 62 265-329 229-290 (356)
155 TIGR00469 pheS_mito phenylalan 47.3 39 0.00084 33.9 5.5 58 12-70 107-166 (460)
156 TIGR00472 pheT_bact phenylalan 46.7 53 0.0012 35.7 6.9 63 5-70 538-600 (798)
157 PRK12445 lysyl-tRNA synthetase 45.7 30 0.00065 35.4 4.6 21 235-255 469-489 (505)
158 PRK06462 asparagine synthetase 44.9 17 0.00036 35.1 2.5 50 204-255 247-317 (335)
159 cd02067 B12-binding B12 bindin 44.1 1.2E+02 0.0027 23.8 7.2 70 243-324 37-108 (119)
160 TIGR00288 conserved hypothetic 43.8 1.2E+02 0.0027 25.8 7.3 54 264-328 105-158 (160)
161 PRK09350 poxB regulator PoxA; 43.7 19 0.00041 34.2 2.7 20 235-254 280-299 (306)
162 PRK00476 aspS aspartyl-tRNA sy 43.2 17 0.00037 37.9 2.4 33 224-256 515-547 (588)
163 COG2099 CobK Precorrin-6x redu 42.5 59 0.0013 29.9 5.5 25 306-330 116-140 (257)
164 COG1066 Sms Predicted ATP-depe 41.4 3.1E+02 0.0066 27.4 10.4 93 235-329 325-432 (456)
165 PRK02261 methylaspartate mutas 40.3 2.1E+02 0.0045 23.6 8.1 15 354-368 121-135 (137)
166 TIGR00462 genX lysyl-tRNA synt 40.2 22 0.00048 33.7 2.5 21 235-255 275-295 (304)
167 PF01520 Amidase_3: N-acetylmu 39.9 1E+02 0.0022 26.1 6.5 52 276-328 26-77 (175)
168 cd02067 B12-binding B12 bindin 39.5 1.9E+02 0.004 22.7 7.8 41 281-325 17-57 (119)
169 TIGR00459 aspS_bact aspartyl-t 39.4 20 0.00043 37.3 2.2 21 235-255 521-541 (583)
170 CHL00192 syfB phenylalanyl-tRN 39.3 77 0.0017 33.9 6.6 65 3-70 436-500 (704)
171 PLN02757 sirohydrochlorine fer 39.2 2.4E+02 0.0051 23.8 8.8 61 265-326 14-79 (154)
172 cd02071 MM_CoA_mut_B12_BD meth 38.9 1.9E+02 0.0042 23.0 7.6 41 282-326 18-58 (122)
173 CHL00144 odpB pyruvate dehydro 38.5 1.2E+02 0.0027 29.0 7.4 60 265-329 202-263 (327)
174 PLN03050 pyridoxine (pyridoxam 38.0 1.2E+02 0.0026 27.9 6.8 56 265-321 61-117 (246)
175 TIGR03702 lip_kinase_YegS lipi 37.9 1.5E+02 0.0032 27.7 7.8 48 279-328 15-62 (293)
176 KOG4163|consensus 37.8 20 0.00043 35.4 1.7 68 12-83 159-234 (551)
177 TIGR00458 aspS_arch aspartyl-t 37.1 24 0.00051 35.3 2.3 48 204-255 342-410 (428)
178 TIGR00676 fadh2 5,10-methylene 36.9 2.9E+02 0.0063 25.6 9.4 80 245-329 14-97 (272)
179 PRK03932 asnC asparaginyl-tRNA 36.8 26 0.00055 35.3 2.5 21 235-255 412-432 (450)
180 PLN02221 asparaginyl-tRNA synt 36.6 27 0.00058 36.3 2.6 50 203-255 484-554 (572)
181 PRK13054 lipid kinase; Reviewe 36.6 1.5E+02 0.0033 27.7 7.7 49 278-328 18-66 (300)
182 PRK00923 sirohydrochlorin coba 36.2 2.2E+02 0.0048 22.7 8.7 59 267-326 4-67 (126)
183 PRK05159 aspC aspartyl-tRNA sy 36.1 27 0.00058 35.0 2.5 48 204-255 351-419 (437)
184 TIGR00677 fadh2_euk methylenet 35.7 2.5E+02 0.0054 26.3 8.8 55 275-329 42-98 (281)
185 PF02091 tRNA-synt_2e: Glycyl- 35.6 1E+02 0.0023 28.4 5.9 79 9-92 15-99 (284)
186 PLN02540 methylenetetrahydrofo 35.4 2.5E+02 0.0053 29.3 9.2 56 275-330 41-98 (565)
187 PF03698 UPF0180: Uncharacteri 35.3 1.3E+02 0.0028 22.5 5.4 68 282-367 12-79 (80)
188 COG3958 Transketolase, C-termi 35.1 1.5E+02 0.0032 28.0 6.9 61 265-329 193-254 (312)
189 TIGR00640 acid_CoA_mut_C methy 34.9 2.4E+02 0.0052 23.1 7.6 71 244-326 41-113 (132)
190 cd05017 SIS_PGI_PMI_1 The memb 34.7 1.8E+02 0.0039 22.9 6.7 55 264-325 43-97 (119)
191 PF13344 Hydrolase_6: Haloacid 34.6 55 0.0012 25.3 3.6 43 282-328 46-89 (101)
192 cd02070 corrinoid_protein_B12- 34.4 3.2E+02 0.0069 23.9 9.5 57 265-325 83-140 (201)
193 PTZ00182 3-methyl-2-oxobutanat 34.1 1.8E+02 0.0039 28.3 7.8 61 265-329 234-295 (355)
194 KOG4132|consensus 34.1 3.2E+02 0.0068 24.9 8.5 79 244-330 116-198 (260)
195 TIGR00283 arch_pth2 peptidyl-t 34.0 1.3E+02 0.0028 24.2 5.6 56 283-341 40-98 (115)
196 COG0041 PurE Phosphoribosylcar 33.9 2.7E+02 0.0059 23.6 7.6 57 266-324 4-63 (162)
197 PLN02903 aminoacyl-tRNA ligase 33.6 47 0.001 35.0 3.8 22 235-256 589-610 (652)
198 cd03415 CbiX_CbiC Archaeal sir 33.2 2.6E+02 0.0057 22.6 8.1 50 276-326 15-65 (125)
199 cd02696 MurNAc-LAA N-acetylmur 33.2 2.1E+02 0.0045 24.1 7.3 53 276-329 27-79 (172)
200 cd00248 Mth938-like Mth938-lik 32.7 35 0.00077 27.0 2.2 50 243-300 39-88 (109)
201 CHL00200 trpA tryptophan synth 32.5 3E+02 0.0066 25.4 8.7 71 242-326 105-175 (263)
202 cd02430 PTH2 Peptidyl-tRNA hyd 32.0 1.8E+02 0.0039 23.3 6.2 57 283-341 40-98 (115)
203 PTZ00401 aspartyl-tRNA synthet 31.4 38 0.00083 35.0 2.7 49 203-255 463-532 (550)
204 PF06857 ACP: Malonate decarbo 31.3 1.2E+02 0.0027 23.0 4.8 31 77-107 42-72 (87)
205 PLN02948 phosphoribosylaminoim 30.8 3.8E+02 0.0082 28.0 10.0 60 264-325 410-472 (577)
206 PF04430 DUF498: Protein of un 30.8 34 0.00073 27.0 1.8 37 264-300 53-89 (110)
207 PRK13253 citrate lyase subunit 30.6 2.5E+02 0.0054 21.6 6.5 31 77-107 43-73 (92)
208 PRK11892 pyruvate dehydrogenas 30.1 2.2E+02 0.0047 28.8 7.8 62 265-329 341-402 (464)
209 PF03668 ATP_bind_2: P-loop AT 30.1 4.4E+02 0.0096 24.8 9.3 102 189-300 167-280 (284)
210 PLN03194 putative disease resi 30.0 2.7E+02 0.0058 24.5 7.3 53 262-314 24-77 (187)
211 TIGR00262 trpA tryptophan synt 29.6 3.8E+02 0.0082 24.7 8.8 48 243-300 102-149 (256)
212 PF04800 ETC_C1_NDUFA4: ETC co 29.6 57 0.0012 25.6 2.8 23 305-327 56-78 (101)
213 PF08141 SspH: Small acid-solu 29.4 63 0.0014 22.5 2.7 25 331-361 33-58 (58)
214 cd02991 UAS_ETEA UAS family, E 29.2 2.6E+02 0.0056 22.2 6.7 43 316-370 74-116 (116)
215 PF01903 CbiX: CbiX; InterPro 28.9 1.3E+02 0.0027 23.1 4.8 49 276-325 8-57 (105)
216 cd00537 MTHFR Methylenetetrahy 28.7 4.3E+02 0.0094 24.3 9.2 65 265-329 29-97 (274)
217 PF08357 SEFIR: SEFIR domain; 28.6 2.9E+02 0.0064 22.5 7.4 61 266-327 2-67 (150)
218 TIGR00457 asnS asparaginyl-tRN 28.2 45 0.00097 33.6 2.6 50 203-255 365-435 (453)
219 cd08170 GlyDH Glycerol dehydro 28.1 4.4E+02 0.0096 25.2 9.5 47 276-326 62-109 (351)
220 PLN02850 aspartate-tRNA ligase 28.0 44 0.00096 34.4 2.5 49 203-255 443-512 (530)
221 cd07995 TPK Thiamine pyrophosp 27.6 2.7E+02 0.0058 24.6 7.3 41 286-327 59-99 (208)
222 TIGR02883 spore_cwlD N-acetylm 27.5 2.8E+02 0.0061 24.0 7.3 54 276-329 28-94 (189)
223 PLN03049 pyridoxine (pyridoxam 27.4 1.9E+02 0.0041 29.3 6.8 57 265-321 60-116 (462)
224 cd08550 GlyDH-like Glycerol_de 27.3 4.5E+02 0.0098 25.2 9.3 71 245-326 38-109 (349)
225 PRK00484 lysS lysyl-tRNA synth 27.2 50 0.0011 33.7 2.7 21 235-255 455-475 (491)
226 KOG0339|consensus 27.1 3E+02 0.0064 28.3 7.9 79 242-327 276-355 (731)
227 TIGR02329 propionate_PrpR prop 27.0 3E+02 0.0065 28.4 8.3 42 277-327 131-172 (526)
228 cd05560 Xcc1710_like Xcc1710_l 26.7 92 0.002 24.6 3.7 49 243-300 40-88 (109)
229 cd03416 CbiX_SirB_N Sirohydroc 26.7 2.8E+02 0.0061 20.9 8.3 49 277-326 15-65 (101)
230 PF03033 Glyco_transf_28: Glyc 26.6 2.5E+02 0.0054 22.3 6.4 51 268-326 2-53 (139)
231 cd03409 Chelatase_Class_II Cla 26.4 2.8E+02 0.006 20.7 8.0 48 278-326 17-66 (101)
232 PRK06253 O-phosphoseryl-tRNA s 26.3 7.3E+02 0.016 25.6 11.1 75 179-254 256-334 (529)
233 COG2185 Sbm Methylmalonyl-CoA 26.2 2.8E+02 0.006 23.2 6.5 18 308-325 81-98 (143)
234 PF02310 B12-binding: B12 bind 26.1 2.8E+02 0.006 21.5 6.5 14 243-256 15-28 (121)
235 PRK08057 cobalt-precorrin-6x r 25.8 3.9E+02 0.0084 24.5 8.1 64 285-367 184-247 (248)
236 COG1105 FruK Fructose-1-phosph 25.6 1.2E+02 0.0025 29.0 4.6 60 238-300 106-168 (310)
237 PRK15424 propionate catabolism 25.5 3.3E+02 0.0072 28.2 8.3 41 278-327 142-182 (538)
238 PRK10319 N-acetylmuramoyl-l-al 25.1 3.1E+02 0.0067 25.8 7.4 53 276-329 84-136 (287)
239 PRK03174 sspH acid-soluble spo 25.1 1.1E+02 0.0024 21.5 3.3 25 331-361 33-58 (59)
240 PLN02502 lysyl-tRNA synthetase 25.1 42 0.0009 34.8 1.7 20 236-255 518-537 (553)
241 cd00733 GlyRS_alpha_core Class 25.0 1.3E+02 0.0029 27.6 4.7 77 9-93 16-101 (279)
242 cd05212 NAD_bind_m-THF_DH_Cycl 24.9 3.7E+02 0.0081 22.2 7.1 84 245-343 12-102 (140)
243 COG2136 IMP4 Predicted exosome 24.9 4.8E+02 0.01 23.0 8.3 61 278-341 14-74 (191)
244 COG4038 Predicted membrane pro 24.9 38 0.00081 24.7 1.0 28 216-244 21-48 (87)
245 PF11823 DUF3343: Protein of u 24.8 1.5E+02 0.0033 21.3 4.3 39 277-327 11-49 (73)
246 PRK01625 sspH acid-soluble spo 24.8 1.1E+02 0.0023 21.5 3.1 26 331-361 33-58 (59)
247 COG2875 CobM Precorrin-4 methy 24.7 2.8E+02 0.0061 25.3 6.6 69 242-322 58-127 (254)
248 TIGR02861 SASP_H small acid-so 24.6 87 0.0019 21.9 2.7 24 331-360 33-57 (58)
249 cd05125 Mth938_2P1-like Mth938 24.6 63 0.0014 25.9 2.3 37 264-300 54-90 (114)
250 PRK09212 pyruvate dehydrogenas 24.6 3.1E+02 0.0067 26.2 7.5 61 265-329 202-263 (327)
251 COG2269 Truncated, possibly in 24.4 1.3E+02 0.0029 28.2 4.7 56 11-72 69-124 (322)
252 PLN02918 pyridoxine (pyridoxam 24.2 2.3E+02 0.005 29.3 6.8 56 265-321 136-192 (544)
253 PLN02958 diacylglycerol kinase 24.1 3.7E+02 0.0081 27.3 8.3 46 282-329 134-179 (481)
254 cd08171 GlyDH-like2 Glycerol d 24.0 4.8E+02 0.01 25.0 8.9 47 276-326 63-110 (345)
255 PF01008 IF-2B: Initiation fac 24.0 4.4E+02 0.0095 24.3 8.3 79 239-335 114-193 (282)
256 TIGR02370 pyl_corrinoid methyl 24.0 4.9E+02 0.011 22.7 9.8 57 265-325 85-142 (197)
257 PRK13111 trpA tryptophan synth 23.8 5.6E+02 0.012 23.6 8.8 23 278-300 129-151 (258)
258 PRK10494 hypothetical protein; 23.7 2.2E+02 0.0047 26.3 6.1 77 245-327 106-186 (259)
259 PRK02983 lysS lysyl-tRNA synth 23.7 1E+02 0.0022 34.8 4.5 20 236-255 1060-1079(1094)
260 PRK07119 2-ketoisovalerate fer 23.6 3.4E+02 0.0073 26.3 7.6 62 264-328 246-307 (352)
261 TIGR00715 precor6x_red precorr 23.4 3.7E+02 0.008 24.8 7.5 65 285-367 191-255 (256)
262 TIGR00388 glyQ glycyl-tRNA syn 23.4 1.6E+02 0.0034 27.3 4.8 77 9-93 17-102 (293)
263 PF02254 TrkA_N: TrkA-N domain 23.2 3.5E+02 0.0075 20.7 6.7 70 239-329 4-73 (116)
264 COG0041 PurE Phosphoribosylcar 23.2 1.4E+02 0.0031 25.2 4.2 29 67-99 8-36 (162)
265 TIGR00204 dxs 1-deoxy-D-xylulo 23.1 3.1E+02 0.0068 28.8 7.8 62 265-329 496-557 (617)
266 TIGR01501 MthylAspMutase methy 23.1 2.3E+02 0.0051 23.3 5.5 13 355-367 120-132 (134)
267 KOG2411|consensus 22.9 79 0.0017 32.0 3.1 31 226-256 556-586 (628)
268 KOG0556|consensus 22.8 26 0.00057 34.4 -0.2 49 37-88 294-343 (533)
269 PF11113 Phage_head_chap: Head 22.6 2.5E+02 0.0055 19.4 4.6 46 317-371 11-56 (56)
270 PTZ00326 phenylalanyl-tRNA syn 22.6 4.4E+02 0.0096 26.9 8.4 72 177-252 402-478 (494)
271 cd02958 UAS UAS family; UAS is 22.4 3.7E+02 0.008 20.7 6.8 70 282-369 44-113 (114)
272 PLN02603 asparaginyl-tRNA synt 22.2 63 0.0014 33.5 2.4 49 204-255 478-547 (565)
273 PRK09348 glyQ glycyl-tRNA synt 21.9 1.6E+02 0.0034 27.2 4.5 77 9-93 20-105 (283)
274 PF10087 DUF2325: Uncharacteri 21.9 2.4E+02 0.0051 21.4 5.1 35 264-298 48-82 (97)
275 cd08192 Fe-ADH7 Iron-containin 21.6 5.4E+02 0.012 24.9 8.7 77 244-328 11-91 (370)
276 cd08183 Fe-ADH2 Iron-containin 21.5 6.8E+02 0.015 24.2 9.4 48 281-328 37-85 (374)
277 cd06167 LabA_like LabA_like pr 21.3 2.3E+02 0.005 23.1 5.3 42 265-313 100-141 (149)
278 PF01981 PTH2: Peptidyl-tRNA h 21.3 3.9E+02 0.0084 21.1 6.4 56 282-340 40-98 (116)
279 KOG0554|consensus 21.2 88 0.0019 30.7 2.9 34 39-72 207-241 (446)
280 PRK04322 peptidyl-tRNA hydrola 21.1 3.9E+02 0.0085 21.2 6.3 56 283-340 38-95 (113)
281 cd03411 Ferrochelatase_N Ferro 21.1 2.9E+02 0.0063 23.2 5.9 21 305-325 99-119 (159)
282 TIGR00142 hycI hydrogenase mat 21.1 4.7E+02 0.01 21.5 9.9 93 268-365 2-101 (146)
283 PRK00724 formate dehydrogenase 21.0 6.6E+02 0.014 23.2 8.8 76 244-338 183-258 (263)
284 KOG0523|consensus 21.0 3.3E+02 0.0071 28.4 7.0 70 265-337 506-575 (632)
285 PTZ00417 lysine-tRNA ligase; P 20.9 76 0.0017 33.1 2.7 20 236-255 550-569 (585)
286 PF02571 CbiJ: Precorrin-6x re 20.8 3.8E+02 0.0083 24.6 7.0 43 285-329 188-230 (249)
287 cd08551 Fe-ADH iron-containing 20.8 6.4E+02 0.014 24.3 9.1 48 280-327 40-89 (370)
288 PLN02225 1-deoxy-D-xylulose-5- 20.8 3.5E+02 0.0075 29.0 7.5 61 265-328 568-628 (701)
289 COG0429 Predicted hydrolase of 20.6 2.3E+02 0.005 27.3 5.5 31 229-259 143-173 (345)
290 COG4981 Enoyl reductase domain 20.5 6.8E+02 0.015 26.0 8.9 36 264-300 123-158 (717)
291 cd02072 Glm_B12_BD B12 binding 20.5 2.9E+02 0.0063 22.6 5.5 22 306-327 66-88 (128)
292 PRK10333 5-formyltetrahydrofol 20.4 66 0.0014 27.9 1.8 27 220-246 130-156 (182)
293 PF11360 DUF3110: Protein of u 20.4 2E+02 0.0044 21.7 4.2 46 277-327 32-77 (86)
294 PRK15454 ethanol dehydrogenase 20.1 6.3E+02 0.014 24.8 8.9 46 282-327 68-115 (395)
295 KOG1432|consensus 20.0 1E+02 0.0023 29.7 3.1 25 305-329 121-145 (379)
296 PRK02399 hypothetical protein; 20.0 4.5E+02 0.0097 26.1 7.6 81 235-327 185-280 (406)
No 1
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-81 Score=602.76 Aligned_cols=353 Identities=44% Similarity=0.705 Sum_probs=333.1
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|.|+ +|+.++||||+|+|+||++++|....+.|.|+||+|+|||+|+||+||+|||+|+|+|+||.+++.+|||+|
T Consensus 66 mY~F~Dk-ggr~laLRpe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi 144 (429)
T COG0124 66 MYTFKDK-GGRSLALRPELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVI 144 (429)
T ss_pred eEEEEeC-CCCEEEecccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHH
Confidence 8999999 999999999999999999999987767899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHHHH-----HHHHHHHHHhcc----ccccccHHHHHHhhhchhhhhcccChhH
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNERKKY-----CIDLINYIKKHK----DSKWFCEDIKHSLYLNSLRVLDSKNLII 151 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~-----~~~l~~~l~~~~----~~~~l~~~~~~~l~~~~~~~l~~~~~~~ 151 (373)
.++.++|++||+.++.|+|||.|+++.+.++ +..+.+++.+.. +. |+++++.++..||+++++++.+..
T Consensus 145 ~l~~~~l~~lGi~~~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~--L~e~~~~r~~~n~lr~ld~k~~~~ 222 (429)
T COG0124 145 ALAVEILEALGIGGFTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLE--LDEDSKRRLKTNPLRVLDSKKDSD 222 (429)
T ss_pred HHHHHHHHHcCCCcEEEEEcCcccHHHHHHhhcchhHHHHHHHHhhhhhHHHHH--hhhhhhhhhhhchHHHHHhccchH
Confidence 9999999999998899999999999999888 999999998874 45 888888889999999999998878
Q ss_pred HHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhh
Q psy17090 152 REILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKF 231 (373)
Q Consensus 152 ~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f 231 (373)
.+++..+|.+.+.++.+++++++++.++|+.+|+++.+||+++||+|||||+|||++.++.+...+||+|||||+|++.|
T Consensus 223 ~~~~~~ap~i~~~~~~e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~ 302 (429)
T COG0124 223 QELLKNAPELLDYLDEESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEF 302 (429)
T ss_pred HHHHhccHHhhhhccHHHHHHHHHHHHHHHHcCCCEEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHh
Confidence 88999999999988889999999999999999999999999999999999999999999877678999999999999999
Q ss_pred cCCCCCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHH
Q psy17090 232 SNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQM 311 (373)
Q Consensus 232 ~~~~~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~ 311 (373)
+|+++||||||+|+|||+.++...+...+...+++|+|++.+++...+++.+|+.||++|++|++++.. +++++|+
T Consensus 303 gG~~~pavGFaiGveRl~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~----r~~k~q~ 378 (429)
T COG0124 303 GGKPTPAVGFAIGVERLILALEEEGKEDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSG----RKLKKQF 378 (429)
T ss_pred CCCCCCceeEehHHHHHHHHHHHcCCCCCcCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEecc----ccHHHHH
Confidence 999999999999999999999998753334667999999999887789999999999999999999998 8899999
Q ss_pred HHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHH
Q psy17090 312 KRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKK 366 (373)
Q Consensus 312 ~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~ 366 (373)
++|++.|++|+|++|++|.++|+|+|||+.++ +|..++++++++.++..
T Consensus 379 k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~------eq~~v~~~~~~~~~~~~ 427 (429)
T COG0124 379 KYADKLGARFAVILGEDELANGVVTVKDLATG------EQEEVPLDELVEELKEL 427 (429)
T ss_pred HHHHHCCCCEEEEEcchHHhcCCEEEeeCCCC------ccceecHHHHHHHHHhh
Confidence 99999999999999999999999999999999 99999999999998754
No 2
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=8.9e-71 Score=543.96 Aligned_cols=353 Identities=41% Similarity=0.685 Sum_probs=312.9
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAEL 79 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Ev 79 (373)
||+|+|+ +|+.++||||+|+|+||+++++.. ....|+|+||+|+|||+++|+.||.|||+|+|+|+||.+++.+|+|+
T Consensus 66 my~~~d~-~g~~l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Ev 144 (430)
T CHL00201 66 MYRFTDR-SNRDITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEV 144 (430)
T ss_pred eEEEEcC-CCCEEEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHH
Confidence 8999999 999999999999999999888765 23579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHhhCh
Q psy17090 80 IIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAP 159 (373)
Q Consensus 80 i~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~ 159 (373)
|.++.++|+.+|+++++|+|||.++++.+..+...+..++.+..+. ++.+..+++..++++++++++....+++..++
T Consensus 145 i~l~~~~l~~lGl~~~~i~l~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~ 222 (430)
T CHL00201 145 IHLAMQIFNELQVKNLILDINSIGKLEDRQSYQLKLVEYLSQYQDD--LDTDSQNRLYSNPIRILDSKNLKTQEILDGAP 222 (430)
T ss_pred HHHHHHHHHHcCCCceEEEECCCCchhhHHHHHHHHHHHHHHHHhh--cCHHHHHHHHhhhHHHhhccCccHHHHHhhhH
Confidence 9999999999999999999999999987666666677777664333 66777778878888888876655567777788
Q ss_pred hhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcCCCCCee
Q psy17090 160 KLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPAS 239 (373)
Q Consensus 160 ~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~pav 239 (373)
.+.+.++.+++++|.++.+.|+.+|+.+.|||+++||++||||+|||++.+..+...+||+|||||+|++.||+++.|||
T Consensus 223 ~l~~~~~~~~~~~l~~~~~~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~Pav 302 (430)
T CHL00201 223 KISDFLSLESTEHFYDVCTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAV 302 (430)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHcCCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCCee
Confidence 77766677899999999999999999999999999999999999999998654445799999999999999988899999
Q ss_pred eeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCC
Q psy17090 240 GFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNA 319 (373)
Q Consensus 240 Gfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi 319 (373)
|||+++|||+.++.+....| ..+.+|+|++.++....+++++++.||++|++|++++.+ .++++++++|++.|+
T Consensus 303 Gfa~g~erl~~~l~~~~~~~--~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~~----~~l~k~~k~A~~~~~ 376 (430)
T CHL00201 303 GCAIGLERLLLIAKDNIILP--KQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLSS----SNFHKQIKQAGKKRA 376 (430)
T ss_pred EEEecHHHHHHHHhccccCC--CCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeCC----CCHHHHHHHHHHcCC
Confidence 99999999999887633222 345789999988888889999999999999999999887 899999999999999
Q ss_pred CEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 320 NFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 320 ~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
++++++|++|.++++|+||++.++ +|..++++++++.+.+...
T Consensus 377 ~~viiiG~~E~~~~~vtvk~l~~~------~q~~i~~~~~~~~~~~~~~ 419 (430)
T CHL00201 377 KACIILGDNEIMDNCITIKWLDEQ------VQENAQYSNFKQEISYLKK 419 (430)
T ss_pred CEEEEEechHHhCCcEEEEECCCC------CcEEEcHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999876644
No 3
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=3.2e-67 Score=533.35 Aligned_cols=348 Identities=23% Similarity=0.347 Sum_probs=280.1
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcC-CCchhhHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF-PGPDIDAEL 79 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~-~~~~~d~Ev 79 (373)
||+|+|+ +|+.++||||+|+|+||++++|.. .|+|+||+|+|||+++|+.||+|||+||||||||. ++..+|+||
T Consensus 385 mY~f~D~-gGr~LaLRPDlTvPiAR~vA~n~~---~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEV 460 (763)
T PLN02972 385 IYDLADQ-GGELCSLRYDLTVPFARYVAMNGI---TSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEI 460 (763)
T ss_pred eEEEECC-CCCEEEeCCCChHHHHHHHHhCCC---CcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHH
Confidence 7999999 999999999999999999998753 48899999999999999999999999999999997 455689999
Q ss_pred HHHHHHHHHHCCCCceEEEeCCCcChhhHHH-------HHHHHHHHHHhc------------cccccccHHHHHHhhhch
Q psy17090 80 IIMCSRLWKNLNLKNICLELNSIGNFNERKK-------YCIDLINYIKKH------------KDSKWFCEDIKHSLYLNS 140 (373)
Q Consensus 80 i~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~-------~~~~l~~~l~~~------------~~~~~l~~~~~~~l~~~~ 140 (373)
|.++.++|+.||++++.|+|||+++++.+.+ ....+...+.++ .+..+++++..+++..
T Consensus 461 I~La~E~L~~LGi~df~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~-- 538 (763)
T PLN02972 461 IKVLTELLDELDIGTYEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGN-- 538 (763)
T ss_pred HHHHHHHHHhCCCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHH--
Confidence 9999999999999999999999998775421 122232233222 0112234443333321
Q ss_pred hhhhcccChhHHHHHhhChh----hH-hhhhHhHHHHHHHHHHHHHhCCC--cEEEecCCCCCCCCccceEEEEEeCCCC
Q psy17090 141 LRVLDSKNLIIREILINAPK----LL-DYLEKDSLDHFYGIQKILNYNNI--SYKINTKLVRGMDYYNRTVFEWTTDKLG 213 (373)
Q Consensus 141 ~~~l~~~~~~~~~~l~~~~~----l~-~~~~~~~~~~l~~l~~~l~~~g~--~i~~D~~~~r~~~YYtG~vFe~~~~~~g 213 (373)
++.-.. ...+++..... +. +....+++++|+.+.++|+.+|+ .+.|||+++|+++||||+|||+|.++.+
T Consensus 539 --L~~L~G-~~~evLd~L~~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g~~ 615 (763)
T PLN02972 539 --FVKERG-PPLELLSKLRQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKGAQ 615 (763)
T ss_pred --HHHhcC-CHHHHHHHHHHhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcCCc
Confidence 111000 01122222111 10 11224688999999999999998 4999999999999999999999987632
Q ss_pred CccceeccCccchhHHhhcCCCCCeeeeechHHHHHHHHHhhcCCC---CCCCCceEEEEEcCchhHHHHHHHHHHHHHc
Q psy17090 214 SQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININH---NFSHQCDIYIVHVGKEAELKAFVLSENLRTL 290 (373)
Q Consensus 214 ~~~~ia~GGRYD~L~~~f~~~~~pavGfai~le~l~~~l~~~~~~~---~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~ 290 (373)
..+||+|||||+|++.|++++.|||||||++|||+.++.+.+..+ ....++||+|++.+++...+++++++.||++
T Consensus 616 -~gsIagGGRYD~Lv~~FgG~~vPAVGFSiGIERL~~~L~~~~~~~~~~~~~~~~dVlV~s~g~~~l~~alkia~~LR~a 694 (763)
T PLN02972 616 -VGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQQEEEKSQVIRPTETEVLVSIIGDDKLALAAELVSELWNA 694 (763)
T ss_pred -cceeeecCCchhHHHhcCCCCCCEEEEEecHHHHHHHHHHcccCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHC
Confidence 258999999999999998889999999999999999998765321 1234579999998888888999999999999
Q ss_pred CCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHHh
Q psy17090 291 GLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIK 369 (373)
Q Consensus 291 Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~~ 369 (373)
|++|++.+ . +++++++++|++.||+++|++|++|.++|+|+|||+.++ +|..|+++|++++|++.+.+
T Consensus 695 GI~aE~~~-~----~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tg------eq~~V~~delv~~l~~~l~~ 762 (763)
T PLN02972 695 GIKAEYKV-S----TRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAG------VEEEVDRTCFVQELKAELLK 762 (763)
T ss_pred CCEEEEeC-C----CCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCC------cceEeeHHHHHHHHHHHhcC
Confidence 99999765 4 789999999999999999999999999999999999999 99999999999999988754
No 4
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=5e-66 Score=516.82 Aligned_cols=340 Identities=25% Similarity=0.400 Sum_probs=275.2
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|+|+ +|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|+|
T Consensus 129 ~y~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi 207 (487)
T PLN02530 129 LYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELL 207 (487)
T ss_pred eEEEECC-CCCEEecCCCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHH
Confidence 7999999 999999999999999999998765446899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCC--ceEEEeCCCcChhhHHH-------HHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhH
Q psy17090 81 IMCSRLWKNLNLK--NICLELNSIGNFNERKK-------YCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLII 151 (373)
Q Consensus 81 ~l~~~~l~~lg~~--~~~i~i~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~ 151 (373)
.++.++|+.||++ ++.|+|||++++..... ....+...+.+. ++ .+.+..... +..++......
T Consensus 208 ~l~~~~l~~lgl~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l-~k--~~~~~l~~~----L~~~~~~~~~~ 280 (487)
T PLN02530 208 AAIVTFFKRVGITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKL-EK--LPREEIEKE----LDTLGVSEEAI 280 (487)
T ss_pred HHHHHHHHHcCCCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhh-hh--ccHHHHHHH----HHHcCCCHHHH
Confidence 9999999999996 79999999987765422 112222222221 11 111111100 00000000000
Q ss_pred H---HHH--hhChhhHhhhh--HhHHHHHHHHHHHHHhCCCc--EEEecCCCCCCCCccceEEEEEeCCCCCccceeccC
Q psy17090 152 R---EIL--INAPKLLDYLE--KDSLDHFYGIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGG 222 (373)
Q Consensus 152 ~---~~l--~~~~~l~~~~~--~~~~~~l~~l~~~l~~~g~~--i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GG 222 (373)
. .++ ...+++.+.++ .+++++|+++.++|+.+|+. +.|||+++||++||||+|||+|.+. +...+||+||
T Consensus 281 ~~l~~l~~~~~~~~l~~~~~~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~-~~~~~I~gGG 359 (487)
T PLN02530 281 EGILDVLSLKSLDDLEALLGADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRA-GKLRAICGGG 359 (487)
T ss_pred HHHHHHHhccCHHHHHHHhhhhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecC-CCcceeeecc
Confidence 0 111 11122222222 35889999999999999986 9999999999999999999999853 3347899999
Q ss_pred ccchhHHhhcCCCCCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCc
Q psy17090 223 RYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNN 302 (373)
Q Consensus 223 RYD~L~~~f~~~~~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~ 302 (373)
|||+|++.|++++.||||||+++++|+.++.+.+..|.|.++++|+|++.+++...+++++++.||++|++|++++.+
T Consensus 360 RYD~Li~~fgg~~~pAvGFa~g~~~l~~~l~~~g~~p~~~~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~-- 437 (487)
T PLN02530 360 RYDRLLSTFGGEDTPACGFGFGDAVIVELLKEKGLLPELPHQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEP-- 437 (487)
T ss_pred cHHHHHHHhCCCCCCeeEEEEhHHHHHHHHHhcCCCCCCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCC--
Confidence 999999999988999999999999999998877766656778899999988888889999999999999999999987
Q ss_pred cccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHH
Q psy17090 303 IHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDA 359 (373)
Q Consensus 303 ~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el 359 (373)
.++++++++|++.|+++++++|++|.++++|+||++.++ +|..|+++++
T Consensus 438 --~~l~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sg------eq~~v~~~el 486 (487)
T PLN02530 438 --KKLKWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSG------EQTEVKLDEL 486 (487)
T ss_pred --CCHHHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCC------cceEechHHc
Confidence 899999999999999999999999999999999999999 9999998875
No 5
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=1.9e-64 Score=496.40 Aligned_cols=336 Identities=47% Similarity=0.793 Sum_probs=287.7
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|.|+ +|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++++.||+|||+|+|+|+||.++..+|+|+|
T Consensus 62 ~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i 140 (397)
T TIGR00442 62 MYTFKDK-GGRSLTLRPEGTAPVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEII 140 (397)
T ss_pred eEEEECC-CCCEEeecCCCcHHHHHHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHH
Confidence 6899999 999999999999999999998755446799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHhhChh
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPK 160 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~ 160 (373)
.++.++|+.+|++++.|+|||.++++.+.+.+..+.+.+.+..+. ++.+...++..++..+.+.....+..+++..|.
T Consensus 141 ~l~~e~l~~lg~~~~~i~i~~~~i~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (397)
T TIGR00442 141 ALAAEILKELGIKDFTLEINSLGILEGRLEYREALLRYLDKHLDK--LGEDSVRRLEKNPLRILDSKNEKIQELLKEAPK 218 (397)
T ss_pred HHHHHHHHHcCCCceEEEecCcccHHHHHHHHHHHHHHHHHhHhh--cCHHHHHHHhhccccCchhhhHHHHHHHhcCHH
Confidence 999999999999889999999999998777777787777763233 333333333322222222222334455555666
Q ss_pred hHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcCCCCCeee
Q psy17090 161 LLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASG 240 (373)
Q Consensus 161 l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~pavG 240 (373)
+...+..+++++|+++.++|+.+|+++.|||+++|+++||||++|++|.++.|...+||+|||||+|+++|++.+.||||
T Consensus 219 ~~~~~~~~~~~~l~~l~~~l~~~~~~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avG 298 (397)
T TIGR00442 219 ILDFLDEESRAHFEELKELLDALGIPYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTPAVG 298 (397)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHcCCCEEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCceEE
Confidence 55555567899999999999999999999999999999999999999998654447899999999999999878899999
Q ss_pred eechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCC
Q psy17090 241 FAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNAN 320 (373)
Q Consensus 241 fai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~ 320 (373)
||+++|||+.++.+.+..+++.++++|+|++.++....++++++..||++|++|++++.. .++++++++|++.|++
T Consensus 299 fs~~~~~l~~~l~~~~~~~~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~----~~l~k~~~~a~~~g~~ 374 (397)
T TIGR00442 299 FAIGIERLLLLLEELGLEPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGG----RKLKKQLKYADKLGAR 374 (397)
T ss_pred eeecHHHHHHHHHhcCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCC----CCHHHHHHHHHHcCCC
Confidence 999999999999887655545667899999988888889999999999999999998887 8999999999999999
Q ss_pred EEEEEccCcccCCeEEEEECCCC
Q psy17090 321 FAAIIGENEIINNTLIIKDLRNK 343 (373)
Q Consensus 321 ~~vivg~~e~~~~~v~Vk~l~~~ 343 (373)
++|++|++|.++++|+|||+.++
T Consensus 375 ~~i~ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 375 FAVILGEDELANGTVTLKDLETG 397 (397)
T ss_pred EEEEEChhHHhCCeEEEEeCCCC
Confidence 99999999999999999999874
No 6
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.4e-64 Score=497.04 Aligned_cols=346 Identities=46% Similarity=0.781 Sum_probs=300.5
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|.|+ +|+.++||||+|+|+||+++++.. .|+|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|+|
T Consensus 66 ~~~~~d~-~g~~l~LRpd~T~~~ar~~~~~~~---~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i 141 (412)
T PRK00037 66 MYTFQDK-GGRSLTLRPEGTAPVVRAVIEHKL---QPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVI 141 (412)
T ss_pred eEEEEcC-CCCEEEecCCCcHHHHHHHHhCCC---CCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHH
Confidence 7999999 999999999999999999997643 799999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHhhChh
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPK 160 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~ 160 (373)
.++.++|+.+|++++.+.+||.+.+......+..+..++....+. +.+++..++....++.++..+....+++..++.
T Consensus 142 ~~~~~~l~~lg~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (412)
T PRK00037 142 ALAADILKALGLKGLKLLINSLGDFEIRANYRKALVGFLEKGLDE--LDEDSKRRLETNPLRILDKKDKEDQELLKDAPK 219 (412)
T ss_pred HHHHHHHHHcCCCceeeeeccCCCHHHhHHHHHHHHHHHHhCchh--hchHHHHHHhhCchhhhcccchhhHHHHhcchH
Confidence 999999999999999999999999877666677777777652222 333333333334455566554444566666677
Q ss_pred hHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcCCCCCeee
Q psy17090 161 LLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASG 240 (373)
Q Consensus 161 l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~pavG 240 (373)
+...++..++++|+.+.++|+.+|+++.|||+++|+++||||++||+|.++.|...+||+|||||+|++.|++.+.||||
T Consensus 220 ~~~~~~~~~~~~l~~l~~~l~~~~~~i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavG 299 (412)
T PRK00037 220 LLDYLDEESKEHFEELKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPAVG 299 (412)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHcCCCEEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCCCCceEE
Confidence 66666677899999999999999999999999999999999999999997655446999999999999999878899999
Q ss_pred eechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCC
Q psy17090 241 FAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNAN 320 (373)
Q Consensus 241 fai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~ 320 (373)
||+++|||+.++.+.+. ++++|+|++.++....++.++++.||++|++|++++.. .++++++++|++.|++
T Consensus 300 fs~~le~l~~~l~~~~~-----~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i~~~~----~~~~~~~~~a~~~gi~ 370 (412)
T PRK00037 300 FAIGVERLLLLLEELGE-----EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGG----RKLKKQFKYADKSGAR 370 (412)
T ss_pred EEEcHHHHHHHHHhcCC-----CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEEeCCC----CCHHHHHHHHHHcCCC
Confidence 99999999999987653 36899999988777788999999999999999998776 7999999999999999
Q ss_pred EEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 321 FAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 321 ~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
++|++|++|.++++|+||++.++ ++..|+++|++++|++..
T Consensus 371 ~~viig~~e~~~~~v~vr~~~~~------~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 371 FVLILGEDELANGTVTVKDLRTG------EQQTVPLDELVEALKELL 411 (412)
T ss_pred EEEEEChhHHhCCeEEEEECCCC------ceEEeeHHHHHHHHHHhh
Confidence 99999999999999999999999 999999999999998653
No 7
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.5e-63 Score=488.69 Aligned_cols=334 Identities=25% Similarity=0.388 Sum_probs=267.5
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|+|+ +|+.++||||+|+|+||+++++. ..+.|+|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|+|
T Consensus 65 ~~~~~D~-~g~~l~LRpD~T~~iaR~va~~~-~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi 142 (423)
T PRK12420 65 IYTLTDQ-GKRDLALRYDLTIPFAKVVAMNP-NIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELM 142 (423)
T ss_pred eEEEecC-CCceecccccccHHHHHHHHhCc-CCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHH
Confidence 7999999 99999999999999999999864 235799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHHH-------HHHHHHH---HHHhcc--------ccccccHHHHHHhhhchhh
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNERKK-------YCIDLIN---YIKKHK--------DSKWFCEDIKHSLYLNSLR 142 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~-------~~~~l~~---~l~~~~--------~~~~l~~~~~~~l~~~~~~ 142 (373)
.++.++|+.||+ ++.|+|||++++..+.+ ....+.. .+.++. ...++++...+.+..
T Consensus 143 ~la~~~l~~lg~-~~~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~---- 217 (423)
T PRK12420 143 SMAFELFRRLNL-EVTIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICN---- 217 (423)
T ss_pred HHHHHHHHHCCC-CEEEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHH----
Confidence 999999999999 69999999987765422 1112211 111110 001233333333221
Q ss_pred hhcccChhHHHHHhhChhh-HhhhhHhHHHHHHHHHHHHHhCCCc--EEEecCCCCCCCCccceEEEEEeCCCCCcccee
Q psy17090 143 VLDSKNLIIREILINAPKL-LDYLEKDSLDHFYGIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSIC 219 (373)
Q Consensus 143 ~l~~~~~~~~~~l~~~~~l-~~~~~~~~~~~l~~l~~~l~~~g~~--i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia 219 (373)
++...+. ..+.....+ .+....+++++|+++.++|+.+|+. +.|||+++|+++||||+|||+|.++.+...+||
T Consensus 218 l~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~ 294 (423)
T PRK12420 218 TVLSCLQ---LSIADFKEAFNNPLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIG 294 (423)
T ss_pred HHhccCh---hhHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCcccccc
Confidence 1111111 111111111 1123357889999999999999884 899999999999999999999998643346899
Q ss_pred ccCccchhHHhhcC--CCCCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHH-cCCeEEE
Q psy17090 220 GGGRYDFLIKKFSN--KFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRT-LGLKVIL 296 (373)
Q Consensus 220 ~GGRYD~L~~~f~~--~~~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~-~Gi~v~~ 296 (373)
+|||||+|+++|++ .+.||||||+++|+|+.++...+.. ..++||+|++.+.. ..++++++.||+ +|++|++
T Consensus 295 ~GGRYD~L~~~f~~~~~~~pAvGfa~~~~~l~~~l~~~~~~---~~~~dvlI~~~~~~--~~a~~ia~~Lr~~~Gi~ve~ 369 (423)
T PRK12420 295 SGGRYDNIIGAFRGDDMNYPTVGISFGLDVIYTALSQKETI---SSTADVFIIPLGTE--LQCLQIAQQLRSTTGLKVEL 369 (423)
T ss_pred CCccHHHHHHHhCCCCCCCCceeEEEcHHHHHHHHHhcCCC---CCCceEEEEEcCCH--HHHHHHHHHHHhhcCCeEEE
Confidence 99999999999976 4689999999999999998765532 24689999997643 468999999999 9999999
Q ss_pred EeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHH
Q psy17090 297 NCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDA 359 (373)
Q Consensus 297 ~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el 359 (373)
++.+ .++++++++|++.|++|++++|++|.++++|+||++.++ ++..|+++++
T Consensus 370 ~~~~----~~l~~~i~~A~~~g~~~iviig~~e~~~~~v~vr~~~~~------~~~~v~~~~~ 422 (423)
T PRK12420 370 ELAG----RKLKKALNYANKENIPYVLIIGEEEVSTGTVMLRNMKEG------SEVKVPLSSL 422 (423)
T ss_pred ecCC----cCHHHHHHHHHHcCCCEEEEEChhHHhcCeEEEEECCCC------ceeeeeHHHc
Confidence 9987 899999999999999999999999999999999999999 9999999876
No 8
>KOG1936|consensus
Probab=100.00 E-value=2.8e-63 Score=462.08 Aligned_cols=352 Identities=22% Similarity=0.368 Sum_probs=287.5
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCC--CCCCCcceeeeEEEEEcC-CCchhhH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERP--QYGRYRQFYQIGVEAIGF-PGPDIDA 77 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~--~~gr~ref~Q~g~eiig~-~~~~~d~ 77 (373)
||.|.|+ .|++++||||+|+|||||+|.|.. ..+|+|+|+.|||++.| ..||+|||+||+|||.|. +...+|+
T Consensus 118 iYdlkDQ-GGEl~SLRYDLTVPfARylAmNki---~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pda 193 (518)
T KOG1936|consen 118 IYDLKDQ-GGELCSLRYDLTVPFARYLAMNKI---TSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDA 193 (518)
T ss_pred eEehhhc-CCcEEEeecccccHHHHHHHHccc---ccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchH
Confidence 6899999 999999999999999999999865 58999999999999988 489999999999999995 5556999
Q ss_pred HHHHHHHHHHHHCCCCceEEEeCCCcChhhHHH--------HHH--HHHHHHHhc---------cccccccHHHHHHhhh
Q psy17090 78 ELIIMCSRLWKNLNLKNICLELNSIGNFNERKK--------YCI--DLINYIKKH---------KDSKWFCEDIKHSLYL 138 (373)
Q Consensus 78 Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~--------~~~--~l~~~l~~~---------~~~~~l~~~~~~~l~~ 138 (373)
|+++.+.++|+.|++.+|.|.+||+.+++.+.+ ++. ...+.|++. ..++||+++.++++..
T Consensus 194 E~lkiv~e~L~~l~Igd~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~ige 273 (518)
T KOG1936|consen 194 ECLKIVVEILSRLGIGDYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGE 273 (518)
T ss_pred HHHHHHHHHHhhcCccceEEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999877665321 111 111222221 1225677777766542
Q ss_pred chhhhhcccC-hhHHHHHhhChhhHhh-hhHhHHHHHHHHHHHHHhCCCc--EEEecCCCCCCCCccceEEEEEeCCC--
Q psy17090 139 NSLRVLDSKN-LIIREILINAPKLLDY-LEKDSLDHFYGIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKL-- 212 (373)
Q Consensus 139 ~~~~~l~~~~-~~~~~~l~~~~~l~~~-~~~~~~~~l~~l~~~l~~~g~~--i~~D~~~~r~~~YYtG~vFe~~~~~~-- 212 (373)
++.... .++.+.+...|.+... -+.+++++|+.+.++++.+|+. |.||+|++||+|||||+|||++..+.
T Consensus 274 ----yv~~~g~~eL~e~l~~d~~l~~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~ 349 (518)
T KOG1936|consen 274 ----YVSLKGLDELLEKLIADPKLSQNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRL 349 (518)
T ss_pred ----HhhhccHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccc
Confidence 221111 1222333334555432 3357899999999999999994 99999999999999999999988531
Q ss_pred ---------------CCccceeccCccchhHHhhcCC--CCCeeeeechHHHHHHHHHhhcCC---CCCCCCceEEEEEc
Q psy17090 213 ---------------GSQNSICGGGRYDFLIKKFSNK--FVPASGFAIGIERLIELIKKININ---HNFSHQCDIYIVHV 272 (373)
Q Consensus 213 ---------------g~~~~ia~GGRYD~L~~~f~~~--~~pavGfai~le~l~~~l~~~~~~---~~~~~~~~v~v~~~ 272 (373)
+.-.+||+|||||+|++.|+.+ .+|+||++++++||+.++...... .......+|+|...
T Consensus 350 ~~~a~~~~~~~~~e~~~vGSvaaGGRYDnLv~mf~~k~~~vPcvG~S~GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~ 429 (518)
T KOG1936|consen 350 ICPAGRYDQAGSTEPGGVGSVAAGGRYDNLVGMFDKKGDKVPCVGQSVGVERIFSILEQRAATVATKIRTTETQVYVAAA 429 (518)
T ss_pred cCcchhhhccccccCCCccccccCcchhhHHHHhccccCcCCccceeehHhHHHHHHHHHHHhhhhccccCceEEEEEec
Confidence 1126999999999999999865 589999999999999999875322 11234578999999
Q ss_pred CchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccce
Q psy17090 273 GKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQI 352 (373)
Q Consensus 273 ~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~ 352 (373)
+...+.+++++++.||.+||.+++.+..+ +++-+|+.+|++.|||++|++|++|+++|.|+||++.+. +++
T Consensus 430 ~k~~l~eR~k~v~~Lw~agI~aE~~yk~~---~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~r------e~~ 500 (518)
T KOG1936|consen 430 GKNLLFERLKVVNALWDAGIKAEYLYKAN---PKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTR------EEV 500 (518)
T ss_pred CCchHHHHHHHHHHHHhcCcchhhhhhcC---ccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccc------cce
Confidence 88889999999999999999999999864 899999999999999999999999999999999999999 999
Q ss_pred eecHHHHHHHHHHHHHh
Q psy17090 353 SISFKDAENYFYKKIIK 369 (373)
Q Consensus 353 ~v~~~el~~~l~~~~~~ 369 (373)
.++.++++..|++.+.+
T Consensus 501 ~v~~e~~v~~l~~~l~~ 517 (518)
T KOG1936|consen 501 LVKREQFVSELKDLLSQ 517 (518)
T ss_pred eccHHHHHHHHHHHhcC
Confidence 99999999999987653
No 9
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=2.8e-57 Score=443.29 Aligned_cols=312 Identities=30% Similarity=0.465 Sum_probs=246.6
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|+|+.+|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|+|
T Consensus 62 ~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi 141 (391)
T PRK12292 62 TFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVI 141 (391)
T ss_pred hEEEeecCCCCEEEECCCCcHHHHHHHHHhccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHH
Confidence 79999986799999999999999999997643336799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHH-------HHHHHHHHHHHhccccc-------cccHHHHHHhhhchhhhhcc
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNERK-------KYCIDLINYIKKHKDSK-------WFCEDIKHSLYLNSLRVLDS 146 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~~-------~~~~~l~~~l~~~~~~~-------~l~~~~~~~l~~~~~~~l~~ 146 (373)
.++.++|+.+|++++.|+|||+++++.+. ..+..+.+.+.++ +.. ++++...+.+. .+++.
T Consensus 142 ~l~~~~l~~lgl~~~~i~i~~~~i~~~il~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~l~----~l~~~ 216 (391)
T PRK12292 142 LLLLEALKALGLPNFTLDLGHVGLFRALLEAAGLSEELEEVLRRALANK-DYVALEELVLDLSEELRDALL----ALPRL 216 (391)
T ss_pred HHHHHHHHHcCCCCeEEEeccHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CHHHHHHHHhcCCHHHHHHHH----HHHHh
Confidence 99999999999999999999999887542 2345566666554 111 12333222222 11211
Q ss_pred cChhHHHHHhhChhhHh-hhhHhHHHHHHHHHHHHHhCCC--cEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCc
Q psy17090 147 KNLIIREILINAPKLLD-YLEKDSLDHFYGIQKILNYNNI--SYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGR 223 (373)
Q Consensus 147 ~~~~~~~~l~~~~~l~~-~~~~~~~~~l~~l~~~l~~~g~--~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGR 223 (373)
.. ..++++.++.+.. ....+++++|+++.+.|+.+|+ .+.|||+++|+++||||+|||+|.++.+ .+||+|||
T Consensus 217 ~g--~~~~l~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~~~~~--~~i~~GGR 292 (391)
T PRK12292 217 RG--GREVLEEARKLLPSLPIKRALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVDGVG--NPIASGGR 292 (391)
T ss_pred cC--CHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEEEEECCCC--CcccCCcc
Confidence 11 1233333333321 1124688999999999999876 4999999999999999999999998765 67999999
Q ss_pred cchhHHhhcCCCCCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCcc
Q psy17090 224 YDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNI 303 (373)
Q Consensus 224 YD~L~~~f~~~~~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~ 303 (373)
||+|++.| +++.||||||+++|||+.+ .... ...+.+++|++.++....+++++++.||++|++|++.+.+
T Consensus 293 YD~L~~~f-g~~~pAvGfai~ldrl~~~--~~~~---~~~~~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~~~~~~--- 363 (391)
T PRK12292 293 YDDLLGRF-GRARPATGFSLDLDRLLEL--QLEL---PVEARKDLVIAPDSEALAAALAAAQELRKKGEIVVLALPG--- 363 (391)
T ss_pred hhhHHHHc-CCCCCCceEEeeHHHHHhh--cccc---ccccCCcEEEEeCcccHHHHHHHHHHHHHcCCEEEEecCC---
Confidence 99999999 5789999999999999984 1111 1234677888887777888999999999999999999887
Q ss_pred ccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEC
Q psy17090 304 HESFKSQMKRANASNANFAAIIGENEIINNTLIIKDL 340 (373)
Q Consensus 304 ~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l 340 (373)
.++++++++|++.|+ ++ .++.+++..+
T Consensus 364 -~~~~~~~~~a~~~~~----~~-----~~~~~~~~~~ 390 (391)
T PRK12292 364 -RNFEDAREYARDRQI----VE-----ADGEWQVEPL 390 (391)
T ss_pred -CChHHHHHHHhhcCe----ee-----cCCeEEEEeC
Confidence 889999999999998 22 2577777654
No 10
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=2.4e-54 Score=421.25 Aligned_cols=302 Identities=21% Similarity=0.284 Sum_probs=227.5
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|+|+.+|+.++||||+|+|+||+++++. ..+.|.|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|||
T Consensus 66 ~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~-~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi 144 (392)
T PRK12421 66 TFKLIDQLSGRLMGVRADITPQVARIDAHLL-NREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEII 144 (392)
T ss_pred eEEEEcCCCCcEEEECCcCCHHHHHHHHhhc-CCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHH
Confidence 7999998349999999999999999988653 235799999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHH-------HHHHHHHHHHHhccccccccHHHHHHhhhch----hhhhcccCh
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNERK-------KYCIDLINYIKKHKDSKWFCEDIKHSLYLNS----LRVLDSKNL 149 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~~-------~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~----~~~l~~~~~ 149 (373)
.++.++|+.||++++.|+|||+++++.+. ..++.+.+++.++ +..++.+........++ +..+.....
T Consensus 145 ~l~~e~l~~lgi~~~~l~ig~~~i~~~il~~l~l~~~~~~~l~~~l~kk-~~~~l~~~~~~~~~~~~~~~~l~~L~~~~g 223 (392)
T PRK12421 145 RLMLGLLRNAGVPALHLDLGHVGIFRRLAELAGLSPEEEEELFDLLQRK-ALPELAEVCQNLGVGSDLRRMFYALARLNG 223 (392)
T ss_pred HHHHHHHHHcCCCCeEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988653 2355666676654 22112222111000000 111111111
Q ss_pred hHHHHHhhChhhH---hhhhHhHHHHHHHHHHHHHhC--CCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCcc
Q psy17090 150 IIREILINAPKLL---DYLEKDSLDHFYGIQKILNYN--NISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRY 224 (373)
Q Consensus 150 ~~~~~l~~~~~l~---~~~~~~~~~~l~~l~~~l~~~--g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRY 224 (373)
. .+.+.++.+.. .....+++++|.++.+.++.+ ++.+.|||+++|+++||||+||++|.++.+ .+|++||||
T Consensus 224 ~-~~~l~~~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~vFe~~~~~~~--~~i~~GGRY 300 (392)
T PRK12421 224 G-LEALDRALSVLALQDAAIRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLVFAAYIPGRG--QALARGGRY 300 (392)
T ss_pred C-HHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCEEEEEECCCC--CcccCCCCc
Confidence 1 12222221111 111246788888999999887 667999999999999999999999998755 789999999
Q ss_pred chhHHhhcCCCCCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccc
Q psy17090 225 DFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIH 304 (373)
Q Consensus 225 D~L~~~f~~~~~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~ 304 (373)
|+|+++|+ .+.||||||+++|||+.++...+ ..+++|++.+.. ..++++++.||++|++|++++.+
T Consensus 301 D~L~~~fg-~~~pAvGfai~lerL~~~l~~~~-------~~~~~~~~~~~~--~~~~~~a~~LR~~G~~~~~~~~~---- 366 (392)
T PRK12421 301 DGIGEAFG-RARPATGFSMDLKELLALQFLEE-------EAGAILAPWGDD--PDLLAAIAELRQQGERVVQLLPG---- 366 (392)
T ss_pred cchhHhhC-CCCCCceEEeeHHHHHhhccccc-------CCceEEeecCCc--HHHHHHHHHHHhCCCEEEEeCCC----
Confidence 99999996 67999999999999998774321 126777776643 34789999999999999998765
Q ss_pred cCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 305 ESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 305 ~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
...++ +.++...++++.
T Consensus 367 -----~~~~~-~~~~~~~~~~~~ 383 (392)
T PRK12421 367 -----DDGSS-EPGCDHRLVLQD 383 (392)
T ss_pred -----cchhH-HhCCCeEEEEEC
Confidence 22224 568888888874
No 11
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=100.00 E-value=4.1e-50 Score=382.16 Aligned_cols=243 Identities=32% Similarity=0.493 Sum_probs=192.3
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|+|+ +|+.++||||+|+|+||+++++......|.|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|+|
T Consensus 52 ~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi 130 (314)
T TIGR00443 52 LFKLFDS-LGRVLGLRPDMTTPIARAVSTRLRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVI 130 (314)
T ss_pred eEEEECC-CCCEEeecCcCcHHHHHHHHHhcccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHH
Confidence 7999999 999999999999999999987644345799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHH-------HHHHHHHHHHHhcccc---------ccccHHHHHHhhhchhhhh
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNERK-------KYCIDLINYIKKHKDS---------KWFCEDIKHSLYLNSLRVL 144 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~~-------~~~~~l~~~l~~~~~~---------~~l~~~~~~~l~~~~~~~l 144 (373)
.++.++|+.+|++++.|+|||.++++.+. .++..+.+.+.++ +. .++++..+..+...+ .+.
T Consensus 131 ~l~~~~l~~lg~~~~~i~l~~~~il~~il~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~l~~~~~~~l~~l~-~~~ 208 (314)
T TIGR00443 131 ALLIEALKALGLKDFKIELGHVGLVRALLEEAGLPEEAREALREALARK-DLVALEELLAELGLDPEVRERLLALP-RLR 208 (314)
T ss_pred HHHHHHHHHcCCCCeEEEeCcHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CHHHHHHHHHhcCCCHHHHHHHHHHH-Hhc
Confidence 99999999999999999999999887652 3455666666554 11 112222222221111 000
Q ss_pred cccChhHHHHHhhChhhHh-hhhHhHHHHHHHHHHHHHhCCCc--EEEecCCCCCCCCccceEEEEEeCCCCCccceecc
Q psy17090 145 DSKNLIIREILINAPKLLD-YLEKDSLDHFYGIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGG 221 (373)
Q Consensus 145 ~~~~~~~~~~l~~~~~l~~-~~~~~~~~~l~~l~~~l~~~g~~--i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~G 221 (373)
....+.+++++++.. ....+++++|+++.++|+.+|++ +.||++++|+++||||+||++|.++.+ .+||+|
T Consensus 209 ----g~~~~~l~~l~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~i~~D~~~~r~~~YYtGivFe~~~~~~~--~~i~~G 282 (314)
T TIGR00443 209 ----GDGEEVLEEARALAGSETAEAALDELEAVLELLEARGVEEYISLDLGLVRGYHYYTGLIFEGYAPGLG--APIAGG 282 (314)
T ss_pred ----CChHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCeEEEecccccCCCCccceEEEEEECCCC--CcccCC
Confidence 011223333222221 11246889999999999999886 999999999999999999999997544 799999
Q ss_pred CccchhHHhhcCCCCCeeeeechHHHHHHHHH
Q psy17090 222 GRYDFLIKKFSNKFVPASGFAIGIERLIELIK 253 (373)
Q Consensus 222 GRYD~L~~~f~~~~~pavGfai~le~l~~~l~ 253 (373)
||||+|+++|+ ++.||||||+++|+|+.++.
T Consensus 283 GRYD~L~~~fg-~~~~AvGfa~~~d~l~~~l~ 313 (314)
T TIGR00443 283 GRYDNLLGRFG-RPLPATGFALNLERLLEALT 313 (314)
T ss_pred ccHHHHHHHcC-CCCCCceEEecHHHHHHHhc
Confidence 99999999995 78999999999999998764
No 12
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.6e-48 Score=376.70 Aligned_cols=243 Identities=27% Similarity=0.401 Sum_probs=178.8
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC-CchhhHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP-GPDIDAEL 79 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~-~~~~d~Ev 79 (373)
||+|+|+ +|+.++||||+|+|+||+++++. .+.|.|+||+|+|||++ .|++|||+|+|+|+||.. ++.+|+||
T Consensus 49 ~~~f~D~-~G~~l~LRpD~T~piaR~~~~~~--~~~p~R~~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEv 122 (373)
T PRK12295 49 IFVTSDE-NGEELCLRPDFTIPVCRRHIATA--GGEPARYAYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEV 122 (373)
T ss_pred eEEEECC-CCCEEeeCCCCcHHHHHHHHHcC--CCCCeEEEEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHH
Confidence 7999999 99999999999999999988763 35799999999999986 689999999999999974 57899999
Q ss_pred HHHHHHHHHHCCCCceEEEeCCCcChhhHH-------HHHHHHHHHHHhccc------c---------------------
Q psy17090 80 IIMCSRLWKNLNLKNICLELNSIGNFNERK-------KYCIDLINYIKKHKD------S--------------------- 125 (373)
Q Consensus 80 i~l~~~~l~~lg~~~~~i~i~~~~~~~~~~-------~~~~~l~~~l~~~~~------~--------------------- 125 (373)
|.++.++|+.+|++++.|+|||+++++... .+...+...+.++.. .
T Consensus 123 i~l~~~~L~~lgl~~~~i~ig~~~il~~ll~~l~l~~~~~~~l~~~i~kk~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 202 (373)
T PRK12295 123 LALALEALAALGPGDLEVRLGDVGLFAALVDALGLPPGWKRRLLRHFGRPRSLDALLARLAGPRVDPLDEHAGVLAALAD 202 (373)
T ss_pred HHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhccchHHHHHHhhcccccccccchhhhhhhhcc
Confidence 999999999999999999999999887542 233344444433210 0
Q ss_pred --------------ccc---c----HHHHHHhhhc----------------hhhhhcccChhHHHHHhhChhhHh--h-h
Q psy17090 126 --------------KWF---C----EDIKHSLYLN----------------SLRVLDSKNLIIREILINAPKLLD--Y-L 165 (373)
Q Consensus 126 --------------~~l---~----~~~~~~l~~~----------------~~~~l~~~~~~~~~~l~~~~~l~~--~-~ 165 (373)
.++ . .+.+.++... ...+++-.. ...+.+++..++.. . .
T Consensus 203 ~~~~~~~~~~~~~~~g~~~~~~r~~~ei~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~g-~~~~~~~~l~~l~~~~~~~ 281 (373)
T PRK12295 203 EAAARALVEDLMSIAGISPVGGRSPAEIARRLLEKAALAAAARLPAEALAVLERFLAISG-PPDAALAALRALAADAGLD 281 (373)
T ss_pred chhhhhhhhhhhhhccccccccccHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHhccChHH
Confidence 000 0 0000010000 000000000 00111111111111 0 1
Q ss_pred hHhHHHHHHHHHHHHHhCCCc---EEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcC-CCCCeeee
Q psy17090 166 EKDSLDHFYGIQKILNYNNIS---YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSN-KFVPASGF 241 (373)
Q Consensus 166 ~~~~~~~l~~l~~~l~~~g~~---i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~-~~~pavGf 241 (373)
..+++++|+++.+.++.+|+. +.|||+++|+++||||+||++|.++.+ ..+||+|||||+|++.|++ ++.|||||
T Consensus 282 ~~~al~~L~~l~~~l~~~g~~~~~v~~D~~~vrgl~YYTGiVFe~~~~~~~-~~~I~~GGRYD~Li~~fg~~~~~pAvGf 360 (373)
T PRK12295 282 LDAALDRFEARLAALAARGIDLERLRFSASFGRPLDYYTGFVFEIRAAGNG-DPPLAGGGRYDGLLTRLGAGEPIPAVGF 360 (373)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEEecccccCCccccceEEEEEECCCC-CCcccCCcCHHHHHHHhCCCCCCCeeEE
Confidence 246788999999999999974 999999999999999999999997653 3799999999999999985 78999999
Q ss_pred echHHHHHHH
Q psy17090 242 AIGIERLIEL 251 (373)
Q Consensus 242 ai~le~l~~~ 251 (373)
|+++|||+.+
T Consensus 361 ai~~drl~~~ 370 (373)
T PRK12295 361 SIWLDRLAAL 370 (373)
T ss_pred EEcHHHHHhh
Confidence 9999999764
No 13
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=100.00 E-value=1.1e-48 Score=372.64 Aligned_cols=239 Identities=35% Similarity=0.575 Sum_probs=182.6
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|+|+ +|++++||||+|+|+||+++++.. ...|.|+||+|+|||+++++.|++|||+|+|+|+||.+++.+|+|+|
T Consensus 54 ~~~~~D~-~G~~l~LR~D~T~~iaR~~a~~~~-~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi 131 (311)
T PF13393_consen 54 MYRFLDR-SGRVLALRPDLTVPIARYVARNLN-LPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVI 131 (311)
T ss_dssp SEEEECT-TSSEEEE-SSSHHHHHHHHHHCCG-SSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHH
T ss_pred hEEEEec-CCcEeccCCCCcHHHHHHHHHhcC-cCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHH
Confidence 6899999 999999999999999999998743 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HCCCCceEEEeCCCcChhhHH-------HHHHHHHHHHHhccc-c-------ccccHHHHHHhhhchhhhh
Q psy17090 81 IMCSRLWK-NLNLKNICLELNSIGNFNERK-------KYCIDLINYIKKHKD-S-------KWFCEDIKHSLYLNSLRVL 144 (373)
Q Consensus 81 ~l~~~~l~-~lg~~~~~i~i~~~~~~~~~~-------~~~~~l~~~l~~~~~-~-------~~l~~~~~~~l~~~~~~~l 144 (373)
.++.++|+ .+|++++.|+|||.++++... ..+..+.+++.++.. . .++++...+.+...+ .+
T Consensus 132 ~l~~e~l~~~l~~~~~~i~i~h~~i~~~il~~~gl~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~l~--~~ 209 (311)
T PF13393_consen 132 KLADEILDRELGLENFTIRINHTGILDAILEHLGLPEDLRRELLEALDKKDLSELKELLSELGLSSESLEILDKLP--EL 209 (311)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEHHHHHHHHHHTTHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTTHHHHHHHHHHH--HH
T ss_pred HHHHHHHHhhcCCCCcEEEEcCchhhHHHHhhcCCChhhhhhhhhheeccccccchhhhcccccchhhhhhhhccc--cc
Confidence 99999997 999999999999999887542 345556666655310 0 112222222111100 00
Q ss_pred cccChhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCC---CcEEEecCCCCCCCCccceEEEEEeCCCCCccceecc
Q psy17090 145 DSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNN---ISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGG 221 (373)
Q Consensus 145 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g---~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~G 221 (373)
......+.+.+...+.. ....+++++|+++.++++.+| .++.|||+++|+++||||+|||+|.++.+ .+||+|
T Consensus 210 ~g~~~~l~~~~~~~~~~--~~~~~~~~~L~~l~~~l~~~~~~~~~i~~D~~~~r~~~YYtG~vFe~~~~~~~--~~ia~G 285 (311)
T PF13393_consen 210 EGDPEALEELLESLPSS--PALQEALEELEELLKLLEALGYPSIKIIFDLSLVRGLDYYTGIVFEVYAPGRG--SPIAGG 285 (311)
T ss_dssp HHSHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHHHCTHTTTTEEEETT-GTSSTTEESEEEEEEETTSS--SESEEE
T ss_pred cchHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHhcccCceEEEChhhccchhhcCCEEEEEEEcCCC--ceEecc
Confidence 00001111111111000 112568899999999999987 46999999999999999999999998765 699999
Q ss_pred CccchhHHhhcCCCCCeeeeechHHHH
Q psy17090 222 GRYDFLIKKFSNKFVPASGFAIGIERL 248 (373)
Q Consensus 222 GRYD~L~~~f~~~~~pavGfai~le~l 248 (373)
||||+|+++| +++.||||||+++|||
T Consensus 286 GRYD~L~~~f-g~~~~AvGfai~ld~L 311 (311)
T PF13393_consen 286 GRYDNLLEQF-GKPIPAVGFAIGLDRL 311 (311)
T ss_dssp EEETTHHHHT-TSS-EEEEEEEEHHHH
T ss_pred cChhHHHHHh-CCCCceEEEEEEeccC
Confidence 9999999999 5889999999999996
No 14
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=100.00 E-value=5.3e-48 Score=358.88 Aligned_cols=212 Identities=45% Similarity=0.729 Sum_probs=180.2
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|+|+ +|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++++.|++|||+|+|+|+||.+++.+|+|+|
T Consensus 47 ~~~~~d~-~g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i 125 (261)
T cd00773 47 MYRFKDK-GGRDLALRPDLTAPVARAVAENLLSLPLPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVI 125 (261)
T ss_pred EEEEECC-CCCEEEeCCCCcHHHHHHHHhcCccCCCCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHH
Confidence 6999999 999999999999999999998654335899999999999999888899999999999999999999999999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHhhChh
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPK 160 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~ 160 (373)
.++.++|+.+|++++.|+|||+++++. ++.. .+++++....+ +
T Consensus 126 ~l~~~~l~~lg~~~~~i~l~~~~i~~~----------l~~~----~~~~~~~~~~l-------~---------------- 168 (261)
T cd00773 126 ALAVEILEALGLKDFQIKINHRGILDG----------IAGL----LEDREEYIERL-------I---------------- 168 (261)
T ss_pred HHHHHHHHHcCCCceEEEECCHHHHHH----------Hhhc----cCCCHHHHHHH-------H----------------
Confidence 999999999999999999999887653 2221 11333222111 1
Q ss_pred hHhhhhHhHHHHHHHHHHHHHhCCC--cEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcCCCCCe
Q psy17090 161 LLDYLEKDSLDHFYGIQKILNYNNI--SYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPA 238 (373)
Q Consensus 161 l~~~~~~~~~~~l~~l~~~l~~~g~--~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~pa 238 (373)
+.+.++++++|+++.+.|+.+|+ .+.|||+++|+++||||+||++|.++.+...+||+|||||+|+++|++.+.||
T Consensus 169 --~~l~~~~l~~l~~l~~~l~~~~~~~~i~~d~~~~r~~~YYtG~vF~~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~a 246 (261)
T cd00773 169 --DKLDKEALAHLEKLLDYLEALGVDIKYSIDLSLVRGLDYYTGIVFEAVADGLGAQGSIAGGGRYDGLLEEFGGEDVPA 246 (261)
T ss_pred --HHhhHHHHHHHHHHHHHHHHcCCCceEEEcCccccCCcccCceEEEEEECCCCccCeEeeccCHHHHHHHhCCCCCCe
Confidence 11112678899999999999985 49999999999999999999999987633479999999999999987788999
Q ss_pred eeeechHHHHHHHH
Q psy17090 239 SGFAIGIERLIELI 252 (373)
Q Consensus 239 vGfai~le~l~~~l 252 (373)
||||+++|+|+.++
T Consensus 247 vGfa~~~d~l~~~~ 260 (261)
T cd00773 247 VGFAIGLERLLLAL 260 (261)
T ss_pred EEEEEcHHHHHHhh
Confidence 99999999999875
No 15
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=4.4e-44 Score=333.74 Aligned_cols=218 Identities=22% Similarity=0.360 Sum_probs=158.8
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|.|+ +|+.++||||+|+|+||+++++....+.|.|+||+|+|||+++ |||+|+|+|+||.+++ +|+|
T Consensus 60 ~y~~~D~-~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~---~Evi 129 (281)
T PRK12293 60 LIRFSDE-KNHQISLRADSTLDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDL---SEIL 129 (281)
T ss_pred eEEEECC-CCCEEEECCcCCHHHHHHHHHhcccCCCceeEEEeccEEecCC------CcccccCeEeeCCCCH---HHHH
Confidence 7999999 9999999999999999999876433367999999999999863 8999999999999886 6999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHh-ccccccccHHHHHHhhhchhhhhcccCh-hHHHHHhhC
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKK-HKDSKWFCEDIKHSLYLNSLRVLDSKNL-IIREILINA 158 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~~~~~~l~~~~~~~l~~~~~-~~~~~l~~~ 158 (373)
.++.++|+.+|++ +.|+|||+++++.+.+....-.+...+ ..+. +.......+ .++++..+. .+.+....
T Consensus 130 ~la~~~l~~lgl~-~~i~ig~~~i~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~l----~~l~~~~~~~~~~~~~~~- 201 (281)
T PRK12293 130 NIAAEIFEELELE-PILQISNIKIPKLVAEILGLDIEVFKKGQIEK--LLAQNVPWL----NKLVRIKTLEDLDEVIEL- 201 (281)
T ss_pred HHHHHHHHHcCCC-CEEEECCHHHHHHHHHHcCCCHHHHhHHHHHH--HHHHhHHHH----HHHHhcCCHHHHHHHHhh-
Confidence 9999999999997 589999999887542210000000000 0000 000000000 112222211 11111111
Q ss_pred hhhHhhhhHhHHHHHHHHHHHHHhCCC-cEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcCCCCC
Q psy17090 159 PKLLDYLEKDSLDHFYGIQKILNYNNI-SYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVP 237 (373)
Q Consensus 159 ~~l~~~~~~~~~~~l~~l~~~l~~~g~-~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~p 237 (373)
...+++++|+++.++++.+++ .+.|||+++|+++||||+|||+|.++ .+|++|||||. .+.|
T Consensus 202 ------~~~~~~~~l~~l~~~l~~l~~~~~~~Dl~~vrgl~YYTGivFe~~~~~----~~i~~GGRYD~-------~~~P 264 (281)
T PRK12293 202 ------VPDEIKEELEKLKELAESIKYENLVIAPLYYAKMRYYDDLFFRFFDGN----STLASGGNYEI-------DGIS 264 (281)
T ss_pred ------CCHHHHHHHHHHHHHHHHcCCCcEEEccccccCCCCccceEEEEEECC----ceeccccCCCC-------CCCC
Confidence 123567778888888888776 59999999999999999999999873 38999999992 4689
Q ss_pred eeeeechHHHHHHHHH
Q psy17090 238 ASGFAIGIERLIELIK 253 (373)
Q Consensus 238 avGfai~le~l~~~l~ 253 (373)
|||||+++|||+.++.
T Consensus 265 AvGfa~~ld~l~~~l~ 280 (281)
T PRK12293 265 SSGFALYTDNLIEILL 280 (281)
T ss_pred cceEEeeHHHHHHHhh
Confidence 9999999999998874
No 16
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=9.4e-42 Score=349.26 Aligned_cols=296 Identities=17% Similarity=0.225 Sum_probs=245.2
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCC----CCCCcceeeeEEEEEcCCCchh
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQ----YGRYRQFYQIGVEAIGFPGPDI 75 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~----~gr~ref~Q~g~eiig~~~~~~ 75 (373)
||+|.|+ +|+.++|||+.|++++|+++.+... ..+|+|+||+|++||+|..+ .+|.|||+|.|+|+||. ...+
T Consensus 246 my~~~d~-~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~ 323 (563)
T TIGR00418 246 MFPFTEL-DNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQI 323 (563)
T ss_pred cceeccC-CCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHH
Confidence 8999999 9999999999999999999876543 35799999999999998543 13999999999999998 4556
Q ss_pred hHH---HHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHH
Q psy17090 76 DAE---LIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIR 152 (373)
Q Consensus 76 d~E---vi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~ 152 (373)
++| +|.++.++++.||++.+.+++|. +.++ ++ +++++.
T Consensus 324 ~~e~~~~i~~~~~~~~~lgl~~~~~~l~~-~~~~----------~~---------~~~~~~------------------- 364 (563)
T TIGR00418 324 KEEFKNQFRLIQKVYSDFGFSFDKYELST-RDPE----------DF---------IGEDEL------------------- 364 (563)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEeC-CChh----------hh---------cCCHHH-------------------
Confidence 666 99999999999999888899885 2221 11 112110
Q ss_pred HHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCC-------ccceeccCccc
Q psy17090 153 EILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGS-------QNSICGGGRYD 225 (373)
Q Consensus 153 ~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~-------~~~ia~GGRYD 225 (373)
...+...+.+.|..+|+...+|++ ||++||+.+.|++ .+..|. +-.++.|||||
T Consensus 365 ----------------~~~~~~~~~~~l~~~~i~~~~~~~--~g~~y~~~~~f~~-~~~lg~~~~~~t~q~~~~~g~ryd 425 (563)
T TIGR00418 365 ----------------WEKAEAALEEALKELGVPYEIDPG--RGAFYGPKIDFAF-KDALGREWQCATVQLDFELPERFD 425 (563)
T ss_pred ----------------HHHHHHHHHHHHHhCCCceEEcCC--CcceecceEEEEe-ecCCCCceeeceeeeccCCHhhcC
Confidence 001223455666677999999998 9999999999996 333332 13478899999
Q ss_pred hh-HHhhcCCCCCee---eeechHHHHHHHHHhh--cCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEec
Q psy17090 226 FL-IKKFSNKFVPAS---GFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCV 299 (373)
Q Consensus 226 ~L-~~~f~~~~~pav---Gfai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~ 299 (373)
.+ +...|++..|++ ||++|+|||+.++.+. +..|+|.+|.+|+|++.++.....|.++++.||++|++|++++.
T Consensus 426 ~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~~~~~p~~~~p~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~ 505 (563)
T TIGR00418 426 LTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLWLAPVQVVVIPVNERHLDYAKKVAQKLKKAGIRVDVDDR 505 (563)
T ss_pred CEEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhccCCCCCcCCCceEEEEEccchHHHHHHHHHHHHHHcCCEEEEECC
Confidence 95 788887788985 9999999999998664 34555678899999999988888999999999999999999988
Q ss_pred cCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHH
Q psy17090 300 FNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKK 366 (373)
Q Consensus 300 ~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~ 366 (373)
+ .++++++++|++.|+|++|++|++|+++|+|+||+++++ +|..++++++++.+++.
T Consensus 506 ~----~sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g------~q~~v~~~el~~~i~~~ 562 (563)
T TIGR00418 506 N----ERLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQ------KLEKMSLDEFLEKLRKE 562 (563)
T ss_pred C----CCHHHHHHHHHhcCCCEEEEEchhhhhCCeEEEEECCCC------ccceeeHHHHHHHHHhh
Confidence 7 899999999999999999999999999999999999999 99999999999888753
No 17
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=322.81 Aligned_cols=301 Identities=26% Similarity=0.308 Sum_probs=222.1
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|+|+ .|+.+|||||+|+||||.+++... ..|.|+||.|+|||..+...|+..||+|+|+|++|.++..+|+|||
T Consensus 62 ~f~l~d~-~g~~l~LRpD~T~pVaR~~~~~~~--~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi 138 (390)
T COG3705 62 LFKLEDE-TGGRLGLRPDFTIPVARIHATLLA--GTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVI 138 (390)
T ss_pred heEEecC-CCCeEEecccccHHHHHHHHHhcC--CCCceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHH
Confidence 6999999 999999999999999999997654 2899999999999987445678889999999999999999999999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhH-------HHHHHHHHHHHHhccccccccH---------HHHHHhhhchhhhh
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNER-------KKYCIDLINYIKKHKDSKWFCE---------DIKHSLYLNSLRVL 144 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~l~~---------~~~~~l~~~~~~~l 144 (373)
.++..+|+.+|+.++.|.|||.|+++.. ..++..|.+++.++ +..++.. .....+... ..++
T Consensus 139 ~la~~~L~~~gl~~~~l~LG~~gif~all~~~~l~~~~~~~L~~a~~~k-~~~~~~~~~~~~~~~~~~~~~l~~l-~~l~ 216 (390)
T COG3705 139 ALALAALKALGLADLKLELGHAGIFRALLAAAGLPGGWRARLRRAFGDK-DLLGLELLVLAAPLSPELRGRLSEL-LALL 216 (390)
T ss_pred HHHHHHHHHcCCcCeEEEeccHHHHHHHHHHcCCChhHHHHHHHHHhcc-chhhHHHHhhccCCChhhhHHHHHH-HHHh
Confidence 9999999999999999999999999864 34677888887765 2111111 111111000 0000
Q ss_pred cccChhHHHHHhhChhhHhhh-h-HhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccC
Q psy17090 145 DSKNLIIREILINAPKLLDYL-E-KDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGG 222 (373)
Q Consensus 145 ~~~~~~~~~~l~~~~~l~~~~-~-~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GG 222 (373)
...+.+..+....... . ..+.++++.+.++++.++.++.+|++++++++||||++|++|..+.+ .++++||
T Consensus 217 -----gg~e~l~~~~~~l~~~~~~~~al~~~~~l~di~~~~~e~i~lDLg~l~~~~YyTg~~F~ay~~~~~--~al~~GG 289 (390)
T COG3705 217 -----GGREVLERARGLLDELMAQGIALNEGRALADIARRLIEKIALDLGRLRHFDYYTGLVFLAYADGLG--DALASGG 289 (390)
T ss_pred -----CCHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhccchhheehhhcccccchhhceeeeeeecccc--chhhccc
Confidence 0112222221111111 1 34677888888888877777999999999999999999999988766 7999999
Q ss_pred ccchhHHhhcCCCCCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCc
Q psy17090 223 RYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNN 302 (373)
Q Consensus 223 RYD~L~~~f~~~~~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~ 302 (373)
|||++.+.|+ ...||+||+..++.|.. +..+....+.++.+.+........+.+++..++.+|-.+...+..
T Consensus 290 RYd~l~~~f~-~~~patGf~~~l~~l~~-----~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~r~~g~~~~~~l~~-- 361 (390)
T COG3705 290 RYDGLLGLFG-RAAPATGFALRLDALAQ-----GGLPLEERRYAALFGRELDYYTGAAFEAAQALRLAGGGRYDRLLT-- 361 (390)
T ss_pred chhhhhhhcC-ccccchhhHhhHHHHHh-----cCCCcccchhhhccCccchhhHHHHHHHHHHhcccCCeEEEeccc--
Confidence 9999999997 57799999999999987 222222344566555444434577889999999776555444432
Q ss_pred cccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 303 IHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 303 ~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
..-..+...++.+.+.+..
T Consensus 362 ------g~~~~~~~~~~~~~~~~~~ 380 (390)
T COG3705 362 ------GLGASEEIPGVGFSLWLDR 380 (390)
T ss_pred ------ccchHhhhcccceeEeecc
Confidence 1334566778888888765
No 18
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-38 Score=330.52 Aligned_cols=294 Identities=18% Similarity=0.289 Sum_probs=244.5
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCCC--C--CCcceeeeEEEEEcCCCchh
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQY--G--RYRQFYQIGVEAIGFPGPDI 75 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~~--g--r~ref~Q~g~eiig~~~~~~ 75 (373)
|| +.|. +|+.++|||+.|++++|++...... .++|+|+||+|+|||+|+++. | |.|||+|.|+++||.+++ +
T Consensus 320 my-~~d~-~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~-~ 396 (639)
T PRK12444 320 MY-FSEV-DNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQ-I 396 (639)
T ss_pred cC-eecC-CCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHH-H
Confidence 78 8899 9999999999999999999644332 367999999999999999764 6 999999999999998754 5
Q ss_pred hHH---HHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHH
Q psy17090 76 DAE---LIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIR 152 (373)
Q Consensus 76 d~E---vi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~ 152 (373)
++| ++.++.++++.||++ +.+.+++. ++ .+ +...
T Consensus 397 ~~e~~~~~~~~~~i~~~lgl~-~~~~~~~r--~~----------~~---------~G~~--------------------- 433 (639)
T PRK12444 397 EDEIKSVMAQIDYVYKTFGFE-YEVELSTR--PE----------DS---------MGDD--------------------- 433 (639)
T ss_pred HHHHHHHHHHHHHHHHHcCCc-EEEEEECC--cc----------cc---------CCCH---------------------
Confidence 666 899999999999994 89998874 11 00 1110
Q ss_pred HHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccch------
Q psy17090 153 EILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDF------ 226 (373)
Q Consensus 153 ~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~------ 226 (373)
+....++ ..+.+.|...|+++.++++ +|. || |.+|++...+.+.+...++|||||.
T Consensus 434 e~~~~~~--------------~~l~~~l~~~~~~y~~~~~--~ga-~Y-~~~~e~~~~~~~~~~~~~~t~~~d~~~~~~f 495 (639)
T PRK12444 434 ELWEQAE--------------ASLENVLQSLNYKYRLNEG--DGA-FY-GPKIDFHIKDALNRSHQCGTIQLDFQMPEKF 495 (639)
T ss_pred HHHHHHH--------------HHHHHHHHHcCCCceeccC--Ccc-cc-cceEEEEeecCCCChhcccceeeeccccccc
Confidence 0000000 2344556667889999998 787 89 9999999876555678999999998
Q ss_pred ---hHHhhcCCCCCeee---eechHHHHHHHHHhh--cCCCCCCCCceEEEEEcCc-hhHHHHHHHHHHHHHcCCeEEEE
Q psy17090 227 ---LIKKFSNKFVPASG---FAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGK-EAELKAFVLSENLRTLGLKVILN 297 (373)
Q Consensus 227 ---L~~~f~~~~~pavG---fai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~-~~~~~~~~la~~Lr~~Gi~v~~~ 297 (373)
++...|++..|++| +..++|||+.+|.+. +..|+|.+|.+|+|++.++ .....|.++++.||++|++|+++
T Consensus 496 ~l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~~~~~~p~~~ap~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~veid 575 (639)
T PRK12444 496 DLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWLAPVQVKVIPVSNAVHVQYADEVADKLAQAGIRVERD 575 (639)
T ss_pred ceEEECCCCCccccEEEEECCCCCHHHHHHHHHHhcCCCCCCccCCceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 66666667899999 888999999998664 4556678899999999988 67889999999999999999999
Q ss_pred eccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 298 CVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 298 ~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
+.+ .++++++++|++.|+|++++||++|+++|+|+||+++++ +|..++++++++.+.+.+.
T Consensus 576 ~~~----~sl~kq~k~A~k~g~~~~iiiG~~E~~~~~v~vr~~~t~------~q~~i~l~el~~~l~~~~~ 636 (639)
T PRK12444 576 ERD----EKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYGEE------KSEVIELDMFVESIKEEIK 636 (639)
T ss_pred CCC----CCHHHHHHHHHHcCCCEEEEEcchhhhcCeEEEEECCCC------ceeeeeHHHHHHHHHHHhh
Confidence 987 899999999999999999999999999999999999999 9999999999999987654
No 19
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-37 Score=318.69 Aligned_cols=298 Identities=18% Similarity=0.270 Sum_probs=239.0
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCC----CCCCcceeeeEEEEEcCCCchh
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQ----YGRYRQFYQIGVEAIGFPGPDI 75 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~----~gr~ref~Q~g~eiig~~~~~~ 75 (373)
||+|.|. +|+.++|||+.|++++|+++++... .++|+|+||+|+|||+|+++ .+|.|||+|+|+|+||.+++.+
T Consensus 252 my~~~d~-~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~ 330 (575)
T PRK12305 252 MFPPMEI-DEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIE 330 (575)
T ss_pred ccccccc-CCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHH
Confidence 8999999 9999999999999999999875432 36899999999999999885 2599999999999999887777
Q ss_pred h--HHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHH
Q psy17090 76 D--AELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIRE 153 (373)
Q Consensus 76 d--~Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~ 153 (373)
| +|++.++.++++.||++++.+.+|+... ..++ .++.
T Consensus 331 ~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~-----------~~~~---------g~~~--------------------- 369 (575)
T PRK12305 331 DEILKVLDFVLELLKDFGFKDYYLELSTREP-----------EKYV---------GDDE--------------------- 369 (575)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCh-----------hhcc---------CCHH---------------------
Confidence 7 9999999999999999889999998532 0111 1100
Q ss_pred HHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeC-CCCCc---cce----eccCccc
Q psy17090 154 ILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTD-KLGSQ---NSI----CGGGRYD 225 (373)
Q Consensus 154 ~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~-~~g~~---~~i----a~GGRYD 225 (373)
... .+ ...+.+.+...|++..++++ +.+||+ ..|+.... ..|.. ..+ ..++|||
T Consensus 370 ~~~-----------~~---~~~l~~~l~~~g~~~~~~~~---~~~~y~-~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fd 431 (575)
T PRK12305 370 VWE-----------KA---TEALREALEELGLEYVEDPG---GAAFYG-PKIDVQIKDALGREWQMSTIQLDFNLPERFD 431 (575)
T ss_pred HHH-----------HH---HHHHHHHHHhcCCCcEecCC---Cccccc-ccEEEEeeccCCCceeccceeeecccHhhCC
Confidence 000 00 12233344556777777776 678885 55776433 23322 122 2568999
Q ss_pred h-hHHhhcCCCCCee---eeechHHHHHHHHHhh--cCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEec
Q psy17090 226 F-LIKKFSNKFVPAS---GFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCV 299 (373)
Q Consensus 226 ~-L~~~f~~~~~pav---Gfai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~ 299 (373)
- +.+..+++..|++ |++.++|||+.++.+. +.+|+|.+|.+|+|++.++.....|.++++.||++|++|+++++
T Consensus 432 l~y~~~~~~~~~p~~ih~~~~G~~eRl~~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~ 511 (575)
T PRK12305 432 LEYTAEDGKRQRPVMIHRALFGSIERFIGILTEHYAGAFPFWLAPVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTS 511 (575)
T ss_pred CEEECCCCCccCceEEEccccccHHHHHHHHHHHhCCCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4 5555555568888 7777999999999774 55676788899999999988888999999999999999999998
Q ss_pred cCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 300 FNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 300 ~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
. .++++++++|++.|+|++|+||++|+++|+|+||+++++ +|..|+++++++.|++.+.
T Consensus 512 ~----~~l~kk~~~A~~~g~p~~iivG~~E~~~~~v~vr~~~~~------~q~~v~~~~l~~~l~~~~~ 570 (575)
T PRK12305 512 N----ERLNKKIRNAQKQKIPYMLVVGDKEVEAGTVSVRTRDGE------QLNGMPLDEFIELIKEKIA 570 (575)
T ss_pred C----CCHHHHHHHHHhcCCCEEEEEechhhhCCEEEEEEcCCC------ceeeeeHHHHHHHHHHHHh
Confidence 7 899999999999999999999999999999999999999 9999999999999987664
No 20
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=8.4e-38 Score=288.71 Aligned_cols=208 Identities=13% Similarity=0.166 Sum_probs=153.5
Q ss_pred EeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHH
Q psy17090 3 SFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIM 82 (373)
Q Consensus 3 ~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l 82 (373)
.|.|. +|+.++||||+|+|+||+++++. ..|.|+||+|+|||+++ +++|+|+|+||.+ ..+++|++.+
T Consensus 54 ~~~~~-~Gr~laLRpD~T~~iAR~~a~~~---~~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~-~~a~~e~l~l 121 (272)
T PRK12294 54 SFWQH-EHQIYALRNDFTDQLLRYYSMYP---TAATKVAYAGLIIRNNE-------AAVQVGIENYAPS-LANVQQSFKL 121 (272)
T ss_pred eeecC-CCCEEEEcCCCCHHHHHHHHhcC---CCCceEEEeccEeccCC-------CcceeceEEECCC-chhHHHHHHH
Confidence 35566 99999999999999999987643 24679999999999764 4899999999955 6899999999
Q ss_pred HHHHHHHCCCCceE-EEeCCCcChhhH---HHHHHHHHHHHHhccccccccHHHHHHhhhchh-hhhcccChhHHHHHhh
Q psy17090 83 CSRLWKNLNLKNIC-LELNSIGNFNER---KKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSL-RVLDSKNLIIREILIN 157 (373)
Q Consensus 83 ~~~~l~~lg~~~~~-i~i~~~~~~~~~---~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~-~~l~~~~~~~~~~l~~ 157 (373)
+.++++.+|..++. |+|||+++++.. .+.+..+.+++.++ +-.+|.+.... . .++ .++.. ....+++.
T Consensus 122 a~~~l~~~g~~~~~~i~lGh~~~~~~l~~~~~~~~~l~~~l~~K-n~~~l~~~l~~-~--~~l~~~l~~---~~~~~l~~ 194 (272)
T PRK12294 122 FIQFIQQQLRDNVHFVVLGHYQLLDALLDKSLQTPDILSMIEER-NLSGLVTYLST-E--HPIVQILKE---NTQQQLNV 194 (272)
T ss_pred HHHHHHHhCCCCCcEEEeccHHHHHHHHhCHHHHHHHHHHHHhc-CHHHHHHHHhh-h--hhHHHHHHh---chHHHHHH
Confidence 99999999776653 799999988765 23455667777665 22112221110 0 000 01111 11223333
Q ss_pred ChhhHhhhhHhHHHHHHHHHHHHHhCCCc-EEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhc
Q psy17090 158 APKLLDYLEKDSLDHFYGIQKILNYNNIS-YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFS 232 (373)
Q Consensus 158 ~~~l~~~~~~~~~~~l~~l~~~l~~~g~~-i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~ 232 (373)
+.++... ..+++++|..+.+.++..|.. +.||++++|+++||||+||++|.++.+ .+|++|||||+|+++||
T Consensus 195 a~~l~~~-~~~~~~~L~~l~~~l~~~~~~~i~~Dl~~~r~~~YYTG~vF~~y~~~~~--~~i~~GGRYD~Ll~~Fg 267 (272)
T PRK12294 195 LEHYIPN-DHPALVELKIWERWLHTQGYKDIHLDITAQPPRSYYTGLFIQCHFAENE--SRVLTGGYYKGSIEGFG 267 (272)
T ss_pred HHHhhhh-hHHHHHHHHHHHHHHHhcCCCeEEEcccccCCCCCcCCeEEEEEECCCC--CcccCCcCchhHHHhcC
Confidence 3333221 246788999999999887764 999999999999999999999998765 79999999999999997
No 21
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-36 Score=316.45 Aligned_cols=299 Identities=16% Similarity=0.206 Sum_probs=228.2
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCC--CC--CCcceeeeEEEEEcCCCch-
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQ--YG--RYRQFYQIGVEAIGFPGPD- 74 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~--~g--r~ref~Q~g~eiig~~~~~- 74 (373)
||+|.|+ +|+.++|||+.|++++|+++++... .++|+|+||+|+|||+|+|+ .| |.|||+|+|+|+||.+++.
T Consensus 316 my~~~d~-~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~ 394 (638)
T PRK00413 316 MFPTTES-DGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIE 394 (638)
T ss_pred cceeecC-CCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHH
Confidence 8999999 9999999999999999999876543 36899999999999999986 35 9999999999999988765
Q ss_pred hh-HHHHHHHHHHHHHCCCCceEEEeCCC-----cChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccC
Q psy17090 75 ID-AELIIMCSRLWKNLNLKNICLELNSI-----GNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN 148 (373)
Q Consensus 75 ~d-~Evi~l~~~~l~~lg~~~~~i~i~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~ 148 (373)
+| +|+|.++.++++.||++++.+++||. |..+.+......+.+.+... ++.... +
T Consensus 395 ~e~~eii~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~----g~~~~~---------------~ 455 (638)
T PRK00413 395 EEVKKVIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDEL----GLDYEI---------------A 455 (638)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHc----CCCcee---------------c
Confidence 36 99999999999999998899999994 44432222233333333321 011000 0
Q ss_pred hhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCC-cEEEecCCCCCCC-CccceEEEEEeCCCCCccceeccCccch
Q psy17090 149 LIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNI-SYKINTKLVRGMD-YYNRTVFEWTTDKLGSQNSICGGGRYDF 226 (373)
Q Consensus 149 ~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~-~i~~D~~~~r~~~-YYtG~vFe~~~~~~g~~~~ia~GGRYD~ 226 (373)
+....+ ..|++. . ...+.+.++. .+ .+++|+++.++++ ||||.+++
T Consensus 456 ~~~~~~--~~~~~~-~---~~~~~~~~~~------~l~~~~~d~~~~~~~dl~Yt~~~~~-------------------- 503 (638)
T PRK00413 456 PGEGAF--YGPKID-F---QLKDALGREW------QCGTIQLDFNLPERFDLTYVGEDGE-------------------- 503 (638)
T ss_pred CCcccc--ccceEE-E---EeecCCCCeE------EeccEeecccChhhcCCEEECCCCC--------------------
Confidence 000000 012210 0 0001111110 11 3778888888888 78776321
Q ss_pred hHHhhcCCCCCee---eeechHHHHHHHHHhh--cCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccC
Q psy17090 227 LIKKFSNKFVPAS---GFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFN 301 (373)
Q Consensus 227 L~~~f~~~~~pav---Gfai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~ 301 (373)
...|++ |++.++||++.++.+. +.+|+|.+|.+|+|++.++.....|.++++.||++|++|++++.+
T Consensus 504 -------~~~p~~i~~~~~g~~eRli~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~- 575 (638)
T PRK00413 504 -------KHRPVMIHRAILGSMERFIGILIEHYAGAFPTWLAPVQVVVLPITDKHADYAKEVAKKLKAAGIRVEVDLRN- 575 (638)
T ss_pred -------ccCcEEEEecceehHHHHHHHHHHHcCCCCCcccCcceEEEEEeChhHHHHHHHHHHHHHhCCCEEEEECCC-
Confidence 234666 6777899999999764 566667788999999998888889999999999999999999988
Q ss_pred ccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 302 NIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 302 ~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
.++++++++|++.|+|++|++|++|+++|+|+||+++++ +|..++++++++.+.+.+.
T Consensus 576 ---~~l~kki~~A~~~g~~~~iiiG~~E~~~~~v~vr~~~~~------~q~~i~~~~l~~~i~~~~~ 633 (638)
T PRK00413 576 ---EKIGYKIREAQLQKVPYMLVVGDKEVEAGTVSVRRRGGK------DLGTMSLDEFIERLLEEIA 633 (638)
T ss_pred ---CCHhHHHHHhhccCCCEEEEEcchhhhcCeEEEEECCCC------ccceeeHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999 9999999999999976654
No 22
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-32 Score=276.88 Aligned_cols=303 Identities=16% Similarity=0.220 Sum_probs=218.9
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCCC----CCCcceeeeEEEEEcCCCch-
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQY----GRYRQFYQIGVEAIGFPGPD- 74 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~~----gr~ref~Q~g~eiig~~~~~- 74 (373)
||.+ |. .|+.++|||+.|++++++++.+... +++|+|+|++|+|||+|.++. +|.|||+|+++||||.+++.
T Consensus 214 mf~~-~~-~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~ 291 (545)
T PRK14799 214 LIVF-NM-EGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLR 291 (545)
T ss_pred ccee-ec-cCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHH
Confidence 6777 88 8999999999999999999876543 378999999999999999875 79999999999999998765
Q ss_pred hhH-HHHHHHHHHHHHCCCC--ceEEEeCCCcC-----hhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcc
Q psy17090 75 IDA-ELIIMCSRLWKNLNLK--NICLELNSIGN-----FNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDS 146 (373)
Q Consensus 75 ~d~-Evi~l~~~~l~~lg~~--~~~i~i~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~ 146 (373)
+|+ |++.++.++++.+|++ ++.+.++++.. .+........+.+.+... +++ ..+.+
T Consensus 292 ~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~----gl~-----------~~~~~- 355 (545)
T PRK14799 292 EEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQES----GLK-----------FGIKE- 355 (545)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHc----CCC-----------eEEec-
Confidence 676 8999999999999995 69999998631 000011111122222111 111 00110
Q ss_pred cChhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccch
Q psy17090 147 KNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDF 226 (373)
Q Consensus 147 ~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~ 226 (373)
....+ ..|++ +....+++.+..++. ++++|+.+.+.++ + +.+..+.....+|
T Consensus 356 ---g~gaf--ygpki-D~~v~dalgr~~q~~--------Tiqldf~lp~rf~----L--ey~~~~~~~~~pv-------- 407 (545)
T PRK14799 356 ---KEGAF--YGPKI-DFEIRDSLGRWWQLS--------TIQVDFNLPERFK----L--EYIDKDGIKKRPV-------- 407 (545)
T ss_pred ---ceecc--ccCcc-ceEehhhcCchhhhh--------hhhhhcCcccccc----e--EEEcCCCCCcccE--------
Confidence 00011 11332 111112222222221 3556776665554 1 2222211101122
Q ss_pred hHHhhcCCCCCeeeeechHHHHHHHHHhh--cCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccc
Q psy17090 227 LIKKFSNKFVPASGFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIH 304 (373)
Q Consensus 227 L~~~f~~~~~pavGfai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~ 304 (373)
+...|+..++||++.++.+. +..|+|.+|.+|+|++.++.....|.++++.||++|++|++++++
T Consensus 408 ---------~ihr~~~GgiERli~iL~e~~~G~~P~wlaP~qV~Iipi~e~~~~~A~~Ia~~LR~~GirVelD~~~---- 474 (545)
T PRK14799 408 ---------MVHRAIYGSIDRFVAILLEHFKGKLPTWLSSVQVRVLPITDEVNEYAEKVLNDMRKRRIRAEIDYAG---- 474 (545)
T ss_pred ---------EEEccCCCCHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhCCCEEEEECCC----
Confidence 11227778999999999774 666777889999999998888889999999999999999999987
Q ss_pred cCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 305 ESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 305 ~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
.++++++++|++.|+|++++||++|+++++|+||+++++ ++..|+++++++.+.+.+.
T Consensus 475 ~~lgkkir~A~k~gip~viIIG~~E~e~~~VtVR~r~~~------eq~~v~l~eli~~l~~~i~ 532 (545)
T PRK14799 475 ETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARGNI------EVRNVKFEKFLELLITEIA 532 (545)
T ss_pred CCHHHHHHHHHHcCCCEEEEEChhHhhcCeEEEEECCCC------ceEEEcHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999 9999999999999987754
No 23
>KOG1035|consensus
Probab=100.00 E-value=1.1e-32 Score=285.46 Aligned_cols=345 Identities=17% Similarity=0.148 Sum_probs=245.2
Q ss_pred eEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHH
Q psy17090 2 YSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELII 81 (373)
Q Consensus 2 ~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~ 81 (373)
+.++|+ +|.++.|++|++.||||+++.|.. ..+|+|.++.|||.+. .. +|+|++||+|||||+.....|||+|.
T Consensus 973 v~~ld~-sG~~v~Lp~DLr~pfar~vs~N~~---~~~Kry~i~rVyr~~~-~~-hP~~~~ec~fDii~~t~sl~~AE~L~ 1046 (1351)
T KOG1035|consen 973 VELLDH-SGDVVELPYDLRLPFARYVSRNSV---LSFKRYCISRVYRPAI-HN-HPKECLECDFDIIGPTTSLTEAELLK 1046 (1351)
T ss_pred eeeecC-CCCEEEeeccccchHHHHhhhchH---HHHHHhhhheeecccc-cC-CCccccceeeeEecCCCCccHHHHHH
Confidence 578999 999999999999999999998764 6889999999999766 44 99999999999999986689999999
Q ss_pred HHHHHHHH-CCCCceEEEeCCCcChhhHH-------HHHHHHHHHHHhccccccccHHHHHH-----------hhhchhh
Q psy17090 82 MCSRLWKN-LNLKNICLELNSIGNFNERK-------KYCIDLINYIKKHKDSKWFCEDIKHS-----------LYLNSLR 142 (373)
Q Consensus 82 l~~~~l~~-lg~~~~~i~i~~~~~~~~~~-------~~~~~l~~~l~~~~~~~~l~~~~~~~-----------l~~~~~~ 142 (373)
++.|++.. |.=.++.|.+||..+++++. .++..+.+.+...... -.....++. +...+..
T Consensus 1047 vi~Ei~~~~l~~~n~~i~lnH~~LL~Ai~~~~~i~~~~r~~v~~~l~~~~~~-r~~~~~~~~~~~~~~~~s~~~~~l~~~ 1125 (1351)
T KOG1035|consen 1047 VIVEITTEILHEGNCDIHLNHADLLEAILSHCGIPKDQRRKVAELLSDMGSS-RPQRSEKELKWVFIRRSSLQLAKLPEF 1125 (1351)
T ss_pred HHHHHHHHHhccCceeEEeChHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-cccHHHHHHHHhhhhHHHHHhhhhHHH
Confidence 99999987 23378999999998888753 3455555555443110 011111110 0000100
Q ss_pred hhcc--cChhHHHHHhhC-hhh-HhhhhHhHHHHHHHHHHHHHhCCCc--EEEecCCCCCCCCccceEEEEEeCCC----
Q psy17090 143 VLDS--KNLIIREILINA-PKL-LDYLEKDSLDHFYGIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKL---- 212 (373)
Q Consensus 143 ~l~~--~~~~~~~~l~~~-~~l-~~~~~~~~~~~l~~l~~~l~~~g~~--i~~D~~~~r~~~YYtG~vFe~~~~~~---- 212 (373)
++.. ...+-...++.. .++ .+.+.. ++++|+.+..++..+|++ +.|+.++.+....-.|++|++.....
T Consensus 1126 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vr-~L~eLe~~~~~~~~~~i~~~~~i~~g~~~~~~~~~g~~~qi~a~~~~~~~ 1204 (1351)
T KOG1035|consen 1126 VLNRLFLVAGRFQALKLIRGKLRADSLVR-ALKELENVVGLLRSLGIEEHVHIYVGPTESRHRNGGIQFQITAEIKSNTS 1204 (1351)
T ss_pred HHhhhhhhhcchhhhHHHhhhhhhhHHHH-HHHHHHHHHHHHHHhccccceEEeeccceeEEcCCcEEEEEeecccCCCc
Confidence 0000 000000111100 011 112233 788899999999999985 78888866665566699999987532
Q ss_pred CCccceeccCccchhHHhhcCCC----CCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHH
Q psy17090 213 GSQNSICGGGRYDFLIKKFSNKF----VPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLR 288 (373)
Q Consensus 213 g~~~~ia~GGRYD~L~~~f~~~~----~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr 288 (373)
|.+..+|+|||||.++..|++.. .+|+|++.-......+..... .+..+..|||+||+.+...+..+++++++||
T Consensus 1205 ~~~~~la~GgRyd~~~~~~~~~~~~~~p~a~gv~~~~~~~~~~~~~~~-~~~~~~~cdvlics~g~~l~t~~~~l~~~LW 1283 (1351)
T KOG1035|consen 1205 GDPVLLAAGGRYDSLLQEVRDEQKMNLPGAIGVSALSTIRQHAPKDLE-PIKTPSSCDVLICSRGSGLLTQRMELVAKLW 1283 (1351)
T ss_pred CCceeeecccchHHHHHHhhhhhhhcCcccceehhhHHHHHhhhcccc-CCCCcccccEEEEecCCchHHHHHHHHHHHH
Confidence 34578999999999999997531 246666622222222222222 2223558999999999878899999999999
Q ss_pred HcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 289 TLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 289 ~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
++||++++.++++ .+.+.+..+|+..-|.+++++. ++..+||....+ +..+..+.+.||++++.+.+
T Consensus 1284 s~gI~a~i~~~~s---~~~~e~~e~~~~~~i~~iliv~-----n~~~~vks~~~e----~~se~~~~~~elv~f~~~~~ 1350 (1351)
T KOG1035|consen 1284 SKGIKAEIVPDPS---PSLEELTEYANEHEITCILIVT-----NQKEKVKSFELE----RKSEKVVGRTELVEFLLQAL 1350 (1351)
T ss_pred HcCcccceeeCCC---cchHHHHHHHhcCceEEEEEEe-----cceeeechhHHh----hhhhhhhhHHHHHHHHHHhh
Confidence 9999999999885 8889999999888888888885 577777776655 44888899999999998865
No 24
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.97 E-value=4.8e-30 Score=261.87 Aligned_cols=347 Identities=17% Similarity=0.224 Sum_probs=222.0
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCCchhh
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPDID 76 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~~~~d 76 (373)
||+|.|+ .|+.++|||+.+.+++.++..... +.++|+|+||+|++||+| +|+.| |.|||+|.++++||.+...+|
T Consensus 93 mf~~~d~-~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~ 171 (565)
T PRK09194 93 LLRLKDR-HGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLD 171 (565)
T ss_pred ceEEecC-CCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHH
Confidence 7999999 999999999888877777654332 236899999999999999 99999 999999999999999887788
Q ss_pred H---HHHHHHHHHHHHCCCCceEEEeCCCcChhhHHH---------------------HHHHHHHHHHh-cccccc----
Q psy17090 77 A---ELIIMCSRLWKNLNLKNICLELNSIGNFNERKK---------------------YCIDLINYIKK-HKDSKW---- 127 (373)
Q Consensus 77 ~---Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~---------------------~~~~l~~~l~~-~~~~~~---- 127 (373)
+ +++.++.++|+.||+ +|.+.++|+|.+..... +.......-.. ......
T Consensus 172 ~~~~~~~~~~~~i~~~lgl-~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~ 250 (565)
T PRK09194 172 ETYDAMYQAYSRIFDRLGL-DFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEAL 250 (565)
T ss_pred HHHHHHHHHHHHHHHHhCC-ccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccc
Confidence 7 566777999999999 59999999886543100 00000000000 000000
Q ss_pred --------cc-HHHHHHhhhchhhh-----hccc-------Ch--------hHHHHHhhChhhHhhhhHhHHHHHHHHHH
Q psy17090 128 --------FC-EDIKHSLYLNSLRV-----LDSK-------NL--------IIREILINAPKLLDYLEKDSLDHFYGIQK 178 (373)
Q Consensus 128 --------l~-~~~~~~l~~~~~~~-----l~~~-------~~--------~~~~~l~~~~~l~~~~~~~~~~~l~~l~~ 178 (373)
-+ ++....+...+-.. +... .+ .+.+.+.. .++ .....+++.++..
T Consensus 251 ~~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~lg~-~~l----~~a~~eel~~~~g 325 (565)
T PRK09194 251 EKVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLENLLGA-APL----ELATEEEIRAALG 325 (565)
T ss_pred eeecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHhhcCC-ccc----ccCCHHHHHHhhC
Confidence 00 00000000000000 0000 00 00000000 000 0001112222211
Q ss_pred H----HHhC----CCcEEEecCCCCCCCCccce-----E---------EEE--EeC----CCCCc-----------ccee
Q psy17090 179 I----LNYN----NISYKINTKLVRGMDYYNRT-----V---------FEW--TTD----KLGSQ-----------NSIC 219 (373)
Q Consensus 179 ~----l~~~----g~~i~~D~~~~r~~~YYtG~-----v---------Fe~--~~~----~~g~~-----------~~ia 219 (373)
+ +.-+ ++++.+|.++...-++++|- - |.. +.+ ..|.. ..|-
T Consensus 326 ~~~G~v~P~Gl~~~v~viiD~sl~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iE 405 (565)
T PRK09194 326 AVPGFLGPVGLPKDVPIIADRSVADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIE 405 (565)
T ss_pred CCCCccCcccCCCCceEEEeccccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEE
Confidence 1 1111 23578899888776776651 1 110 000 00100 1111
Q ss_pred ------ccCccchhHH-hhc---CCCCC--eeeeechHHHHHHHHHhh-----c-CCCCCCCCceEEEEEcC---chhHH
Q psy17090 220 ------GGGRYDFLIK-KFS---NKFVP--ASGFAIGIERLIELIKKI-----N-INHNFSHQCDIYIVHVG---KEAEL 278 (373)
Q Consensus 220 ------~GGRYD~L~~-~f~---~~~~p--avGfai~le~l~~~l~~~-----~-~~~~~~~~~~v~v~~~~---~~~~~ 278 (373)
=|=+|..-++ .|. ++..| ...|+||++||+.++.+. | .+|++.+|.+|+|++.+ +....
T Consensus 406 vGh~f~lG~~ys~~~~~~~~~~~g~~~~~~m~~~gIGv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~~~~~~ 485 (565)
T PRK09194 406 VGHIFQLGTKYSEAMNATVLDENGKAQPLIMGCYGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKDEEVKE 485 (565)
T ss_pred EEEEecCCcchhhccCCEEECCCCCEEeEEEeeEechHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCcHHHHH
Confidence 2334432211 111 12222 346889999999999876 5 45667889999999997 45678
Q ss_pred HHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHH
Q psy17090 279 KAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKD 358 (373)
Q Consensus 279 ~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~e 358 (373)
.+.++++.||++|++|.+++++ .++++++++|+..|+|++|+||++|+++|+|+||++.++ ++..|++++
T Consensus 486 ~a~~i~~~L~~~gi~v~~Ddr~----~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~g------e~~~v~~~~ 555 (565)
T PRK09194 486 LAEKLYAELQAAGIEVLLDDRK----ERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTG------EKEEVPVDE 555 (565)
T ss_pred HHHHHHHHHhccCCeEEEECCC----CCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCC------ceEEEeHHH
Confidence 8999999999999999999887 899999999999999999999999999999999999999 999999999
Q ss_pred HHHHHH
Q psy17090 359 AENYFY 364 (373)
Q Consensus 359 l~~~l~ 364 (373)
+++.+.
T Consensus 556 l~~~i~ 561 (565)
T PRK09194 556 LVEFLK 561 (565)
T ss_pred HHHHHH
Confidence 998886
No 25
>PLN02908 threonyl-tRNA synthetase
Probab=99.97 E-value=8.5e-31 Score=272.23 Aligned_cols=301 Identities=13% Similarity=0.173 Sum_probs=216.4
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCC----CCCCCcceeeeEEEEEcCC-Cch
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERP----QYGRYRQFYQIGVEAIGFP-GPD 74 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~----~~gr~ref~Q~g~eiig~~-~~~ 74 (373)
||.| |. +++.++|||+.|++++++++..... +++|+|+|++|++||+|.+ +.+|.|||+|+++++|+.+ ...
T Consensus 367 mf~~-~~-~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~ 444 (686)
T PLN02908 367 MFVF-EI-EKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIK 444 (686)
T ss_pred ccEE-ec-CCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHH
Confidence 7888 77 8999999999999999999865443 3689999999999999987 3469999999999999984 456
Q ss_pred hhH-HHHHHHHHHHHHCCCCceEEEeCCCc--ChhhHHHH---HHHHHHHHHhccccccccHHHHHHhhhchhhhhcccC
Q psy17090 75 IDA-ELIIMCSRLWKNLNLKNICLELNSIG--NFNERKKY---CIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN 148 (373)
Q Consensus 75 ~d~-Evi~l~~~~l~~lg~~~~~i~i~~~~--~~~~~~~~---~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~ 148 (373)
+++ |++.++.++++.||++ +.+.+|++. .+.....| ...|.+.+.+.. . . +. ++
T Consensus 445 ~e~~~~l~~~~~v~~~lG~~-~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~-~---~-----------~~-~~--- 504 (686)
T PLN02908 445 DEVKGVLDFLDYVYEVFGFT-YELKLSTRPEKYLGDLETWDKAEAALTEALNAFG-K---P-----------WQ-LN--- 504 (686)
T ss_pred HHHHHHHHHHHHHHHHCCCc-EEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcC-C---C-----------cE-EC---
Confidence 777 8999999999999995 999999963 22222222 222333333320 0 0 00 00
Q ss_pred hhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCC--CCCCccceEEEEEeCCCCCccceeccCccch
Q psy17090 149 LIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVR--GMDYYNRTVFEWTTDKLGSQNSICGGGRYDF 226 (373)
Q Consensus 149 ~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r--~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~ 226 (373)
+. .. ....|++ +....+++.++.++. .+++|+.+.. +++||| .. +..
T Consensus 505 ~g-~~-afygpki-d~~~~d~l~r~~~~~--------t~q~df~lp~~f~L~Y~~--------e~-~~~----------- 553 (686)
T PLN02908 505 EG-DG-AFYGPKI-DITVSDALKRKFQCA--------TVQLDFQLPIRFKLSYSA--------ED-EAK----------- 553 (686)
T ss_pred CC-ce-eecccce-EEEEEeccCCEeecc--------ceeecccCHhhcCCEEEC--------CC-CCc-----------
Confidence 00 00 0112322 000011222221111 4677777643 567776 11 100
Q ss_pred hHHhhcCCCCCeeeeechHHHHHHHHHhh--cCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccc
Q psy17090 227 LIKKFSNKFVPASGFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIH 304 (373)
Q Consensus 227 L~~~f~~~~~pavGfai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~ 304 (373)
...+...-.....++||++.+|.+. +.+|.|.+|.+|+|++.++.....|.++++.||++|++|+++..+
T Consensus 554 ----~~~pv~ihrai~GsiERli~iL~e~~~g~~p~wlsp~qv~Vipv~~~~~~~A~~va~~LR~~Gi~vevd~~~---- 625 (686)
T PLN02908 554 ----IERPVMIHRAILGSVERMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTD---- 625 (686)
T ss_pred ----CCCCEEEEeCceEhHHHHHHHHHHHcCCCCCCCCCCceEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCC----
Confidence 0000011001222999999999776 667777889999999999888889999999999999999999887
Q ss_pred cCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 305 ESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 305 ~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
.++++++++|++.|++++++||++|+++|+|+||+++++ ++..++++++++.+++...
T Consensus 626 ~~l~kkir~A~~~g~~~viivG~~E~~~~~V~vr~~~~~------~q~~i~l~el~~~l~~~~~ 683 (686)
T PLN02908 626 RKIQKKVREAQLAQYNYILVVGEAEAATGTVNVRTRDNV------VHGEKKIEELLTEFKEERA 683 (686)
T ss_pred CCHHHHHHHHHHcCCCEEEEECchHHhCCEEEEEECCCC------ceeeeeHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999 9999999999999986543
No 26
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.95 E-value=6.1e-27 Score=232.03 Aligned_cols=303 Identities=18% Similarity=0.254 Sum_probs=197.5
Q ss_pred CeEeeecCCCceEeecC---CChHHHHHHHHHhcCCCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCCc-
Q psy17090 1 MYSFIDELNGDNLSLRP---EGTASVIRSVIENNLIYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGP- 73 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRp---D~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~~- 73 (373)
||+|.|. .++.++||| +++.+++|....+ ++++|+|+|++|++||+| +|..| |.|||+|.++++|+.+..
T Consensus 93 mf~~~d~-~~~~~~L~Pt~e~~~~~~~~~~~~s--yrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~ 169 (439)
T PRK12325 93 MLRIKDR-HDREMLYGPTNEEMITDIFRSYVKS--YKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEG 169 (439)
T ss_pred heEEecC-CCCEEEEcCCCcHHHHHHHHHHhhh--chhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHH
Confidence 7999999 999999999 5667777776643 456999999999999999 77778 999999999999987632
Q ss_pred --hhhHHHHHHHHHHHHHCCCCceEEEeCCC--cChhhHHHHHHHHHHHH--Hhcc-ccccccHHHHHHhhhchhhhhcc
Q psy17090 74 --DIDAELIIMCSRLWKNLNLKNICLELNSI--GNFNERKKYCIDLINYI--KKHK-DSKWFCEDIKHSLYLNSLRVLDS 146 (373)
Q Consensus 74 --~~d~Evi~l~~~~l~~lg~~~~~i~i~~~--~~~~~~~~~~~~l~~~l--~~~~-~~~~l~~~~~~~l~~~~~~~l~~ 146 (373)
....+++.+..++++.||++.+.+..+.. |-..+ .+|. .... +....++.+.+...
T Consensus 170 a~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s--------~ef~~~~~~Ge~~~~~c~~~~~~~~--------- 232 (439)
T PRK12325 170 ARHSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLS--------HEFIILAETGESTVFYDKDFLDLLV--------- 232 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcc--------eeeEeecCCCCceEEEcCCchhhcc---------
Confidence 35688999999999999997666655332 11100 0010 0000 00001111100000
Q ss_pred cChhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCc--------------------EEEecCCCCCCCCccceEEE
Q psy17090 147 KNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNIS--------------------YKINTKLVRGMDYYNRTVFE 206 (373)
Q Consensus 147 ~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~--------------------i~~D~~~~r~~~YYtG~vFe 206 (373)
. .+.. .. +. ..+.+.++.++.. +..--++.-|..++-|..|
T Consensus 233 ~----------~~~~--~~-----~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~y- 293 (439)
T PRK12325 233 P----------GEDI--DF-----DV-ADLQPIVDEWTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTKY- 293 (439)
T ss_pred C----------CCcc--cC-----CH-HHHHHHHhhhcccccchhhhhccCCCCcCCCcceeecceEEEEeeecCcccc-
Confidence 0 0000 00 00 1111111111111 0000000001112222221
Q ss_pred EEeCCCCCccceeccCccchhHHhhcCCCCCeeeeechHHHHHHHHHhh-----c-CCCCCCCCceEEEEEc---CchhH
Q psy17090 207 WTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKI-----N-INHNFSHQCDIYIVHV---GKEAE 277 (373)
Q Consensus 207 ~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~pavGfai~le~l~~~l~~~-----~-~~~~~~~~~~v~v~~~---~~~~~ 277 (373)
....+. ..+-..|.. ..+.-..|++|++|++.++.+. + .+|.|.+|.+|+|++. ++...
T Consensus 294 --s~~f~~-~y~d~~g~~---------~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~ 361 (439)
T PRK12325 294 --SEPMNA-KVQGPDGKE---------VPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACD 361 (439)
T ss_pred --cHhcCC-EEECCCCCE---------EeEEEeeeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHH
Confidence 000000 000000000 1122335788999999999887 5 5677788999999998 45567
Q ss_pred HHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHH
Q psy17090 278 LKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFK 357 (373)
Q Consensus 278 ~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~ 357 (373)
..+.++++.||++|++|+++.++ .++++++++|+..|+|++|+||++|+++++|+||+++++ ++..|+++
T Consensus 362 ~~a~~i~~~L~~~Gi~v~~D~~~----~~lg~ki~~a~~~giP~~iiVG~~e~~~~~V~vr~r~~~------~~~~v~~~ 431 (439)
T PRK12325 362 AACEKLYAALSAAGIDVLYDDTD----ERPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTG------EREELSVE 431 (439)
T ss_pred HHHHHHHHHHHHCCCEEEEECCC----CCHhHHHHHHHHcCCCEEEEECCcccccCeEEEEEcCCC------ceEEEEHH
Confidence 88999999999999999999887 899999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHH
Q psy17090 358 DAENYFY 364 (373)
Q Consensus 358 el~~~l~ 364 (373)
++++.+.
T Consensus 432 el~~~i~ 438 (439)
T PRK12325 432 AAINRLT 438 (439)
T ss_pred HHHHHHh
Confidence 9998764
No 27
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.94 E-value=2.5e-25 Score=225.81 Aligned_cols=342 Identities=20% Similarity=0.242 Sum_probs=209.5
Q ss_pred CeEeeecCCCceEeecCC----ChHHHHHHHHHhcCCCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCCc
Q psy17090 1 MYSFIDELNGDNLSLRPE----GTASVIRSVIENNLIYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGP 73 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD----~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~~ 73 (373)
||+|.|+ .|+.++|||+ +|..++|.+.++ ..+|+|+||++++||+| +|+.| |.|||+|.++++||.+..
T Consensus 93 mf~~~dr-~~~~l~LrPT~Ee~~t~~~~~~i~sy---r~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~ 168 (568)
T TIGR00409 93 LLRLKDR-KGREFVLGPTHEEVITDLARNEIKSY---KQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEE 168 (568)
T ss_pred cEEEecC-CCCEEEEcCCCcHHHHHHHHHHHhhc---cccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChH
Confidence 7999999 9999999997 887777776643 35899999999999999 99999 999999999999999888
Q ss_pred hhhHHHHHH---HHHHHHHCCCCceEEEeCCCcChhhHH---------------------HHHHHHHHHHHhcccccccc
Q psy17090 74 DIDAELIIM---CSRLWKNLNLKNICLELNSIGNFNERK---------------------KYCIDLINYIKKHKDSKWFC 129 (373)
Q Consensus 74 ~~d~Evi~l---~~~~l~~lg~~~~~i~i~~~~~~~~~~---------------------~~~~~l~~~l~~~~~~~~l~ 129 (373)
.+|+|+..+ ..++|++||++ +.+..++.|.+.... .+...+... ....+. -.
T Consensus 169 ~a~~e~~~~~~~y~~if~~LgL~-~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~e~a-~~~~~~--~~ 244 (568)
T TIGR00409 169 SLDATYQKMYQAYSNIFSRLGLD-FRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIELA-EALAPG--ER 244 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc-ceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchhhhhh-cccCcc--cc
Confidence 888888755 59999999994 777766665433210 000000000 000000 00
Q ss_pred HHHHHHhhhchhhhhcccC----hhHHHHHhhCh--------------------------------hhHhhh------hH
Q psy17090 130 EDIKHSLYLNSLRVLDSKN----LIIREILINAP--------------------------------KLLDYL------EK 167 (373)
Q Consensus 130 ~~~~~~l~~~~~~~l~~~~----~~~~~~l~~~~--------------------------------~l~~~~------~~ 167 (373)
+.. ...+......+ ..+...+.-.+ ++...+ ..
T Consensus 245 ~~~-----~~~~~~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~ 319 (568)
T TIGR00409 245 NAP-----TAELDKVDTPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLEL 319 (568)
T ss_pred ccc-----cccceeecCCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccCccccc
Confidence 000 00000000000 00011110000 000000 00
Q ss_pred hHHHHHHHHHH----HHHhCC----CcEEEecCCCCCCCC----------ccceEEE----E--EeC----CCCCc----
Q psy17090 168 DSLDHFYGIQK----ILNYNN----ISYKINTKLVRGMDY----------YNRTVFE----W--TTD----KLGSQ---- 215 (373)
Q Consensus 168 ~~~~~l~~l~~----~l~~~g----~~i~~D~~~~r~~~Y----------YtG~vFe----~--~~~----~~g~~---- 215 (373)
..-+++..... .+.-.| +.+..|.+.....++ |.|+.+. . +.+ ..|..
T Consensus 320 a~~~~~~~~~g~~~g~~gpv~~~~~~~i~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd~cp~c 399 (568)
T TIGR00409 320 ATEEEIFQKIASGPGSLGPVNINGGIPVLIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGDPSPDG 399 (568)
T ss_pred CCHHHHHHhhCCCCCccCccccccCceEEechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccCCCCCC
Confidence 00011111100 000111 235566664433333 2233221 0 000 00100
Q ss_pred -------ccee------ccCccchhHHh-h---cCCCC--CeeeeechHHHHHHHHHhh-----c-CCCCCCCCceEEEE
Q psy17090 216 -------NSIC------GGGRYDFLIKK-F---SNKFV--PASGFAIGIERLIELIKKI-----N-INHNFSHQCDIYIV 270 (373)
Q Consensus 216 -------~~ia------~GGRYD~L~~~-f---~~~~~--pavGfai~le~l~~~l~~~-----~-~~~~~~~~~~v~v~ 270 (373)
+.|- =|=||..-++- | .++.. ....++||++|++.++.+. | .+|++.+|++|.|+
T Consensus 400 ~~~l~~~rgIEvGhiF~LG~kYS~~~~~~~~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Ii 479 (568)
T TIGR00409 400 QGTLKIARGIEVGHIFQLGTKYSEALKATFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIV 479 (568)
T ss_pred CCcccccceEEEEEeccchhhhHHhcCCEEECCCCCEEEEEEeCCcchHHHHHHHHHHHhCccCCCcCChhhCCeEEEEE
Confidence 1111 23355432211 1 11222 2335778999999998774 3 35667899999999
Q ss_pred EcCc---hhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCC
Q psy17090 271 HVGK---EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDP 347 (373)
Q Consensus 271 ~~~~---~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~ 347 (373)
|... ...+.+.++.+.|.++|++|.++.++ .+++.+++.|+..|+|+.|+||.+++++|+|+|++++++
T Consensus 480 p~~~~~~~~~~~a~~l~~~L~~~gi~v~~DDr~----~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~---- 551 (568)
T TIGR00409 480 VMNMKDEEQQQLAEELYSELLAQGVDVLLDDRN----ERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNG---- 551 (568)
T ss_pred EcCCChHHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCC----
Confidence 8752 34566888999999999999999887 899999999999999999999999999999999999999
Q ss_pred CccceeecHHHHHHHHHH
Q psy17090 348 TLKQISISFKDAENYFYK 365 (373)
Q Consensus 348 ~~~~~~v~~~el~~~l~~ 365 (373)
++..|+++++++++..
T Consensus 552 --~~~~v~~~~l~~~i~~ 567 (568)
T TIGR00409 552 --EKQLIKKDELVECLEE 567 (568)
T ss_pred --ceEEEEHHHHHHHHhh
Confidence 9999999999998753
No 28
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.93 E-value=1.4e-24 Score=215.37 Aligned_cols=255 Identities=20% Similarity=0.236 Sum_probs=181.7
Q ss_pred CCceEeecCCChHHHHHHHHHh-cCCC-CCCeeEEEeeceeecCCCC-CC--CCcceeeeEEEEEcCCCchh--hHHHHH
Q psy17090 9 NGDNLSLRPEGTASVIRSVIEN-NLIY-DGPKRLWYSGPMFRHERPQ-YG--RYRQFYQIGVEAIGFPGPDI--DAELII 81 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~-~~~~-~~p~k~~y~g~vfR~~~~~-~g--r~ref~Q~g~eiig~~~~~~--d~Evi~ 81 (373)
++..+.|||+....+-=.+.+. ..++ ++|+|++++|+|||+|.+. .| |.|||+|.++++|..+.... -..++.
T Consensus 156 ~~~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~ 235 (456)
T PRK04173 156 SKSLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIE 235 (456)
T ss_pred CCcceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHH
Confidence 6778999999765543333321 1244 6899999999999998543 45 78999999999999876421 133455
Q ss_pred HHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHhhChhh
Q psy17090 82 MCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKL 161 (373)
Q Consensus 82 l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~l 161 (373)
++.+++..+|++...++++
T Consensus 236 ~~~~~l~~lG~~~~~~~~s------------------------------------------------------------- 254 (456)
T PRK04173 236 LRKNWLLDLGIDPENLRFR------------------------------------------------------------- 254 (456)
T ss_pred HHHHHHHHcCCCccceEEE-------------------------------------------------------------
Confidence 5566666666654444443
Q ss_pred HhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCC-CC--Cc--cceeccCccchhHH--hhcCC
Q psy17090 162 LDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDK-LG--SQ--NSICGGGRYDFLIK--KFSNK 234 (373)
Q Consensus 162 ~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~-~g--~~--~~ia~GGRYD~L~~--~f~~~ 234 (373)
+...+++.|||+.+|++.... .| .. ..+++||+|| |.. .|++.
T Consensus 255 -----------------------------~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dyd-L~~~~~~s~~ 304 (456)
T PRK04173 255 -----------------------------EHLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYD-LSRHSKHSGE 304 (456)
T ss_pred -----------------------------ecCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhh-cccchhhcCC
Confidence 222223333333333322110 01 00 2467899998 553 23332
Q ss_pred CC-------------C-eeeeechHHHHHHHH-Hhh--c------------CCCCCCCCceEEEEEcCc--hhHHHHHHH
Q psy17090 235 FV-------------P-ASGFAIGIERLIELI-KKI--N------------INHNFSHQCDIYIVHVGK--EAELKAFVL 283 (373)
Q Consensus 235 ~~-------------p-avGfai~le~l~~~l-~~~--~------------~~~~~~~~~~v~v~~~~~--~~~~~~~~l 283 (373)
+. | .+++|+|+||++.++ .+. + .+|+|.+|.+|+|++.++ .....|.++
T Consensus 305 dl~y~~~~~~~~~~~P~vi~~siGieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~~e~~~~A~~l 384 (456)
T PRK04173 305 DLSYFDDETTGEKYIPYVIEPSAGLDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKKEKLSEKAREI 384 (456)
T ss_pred CeEEEecCCCCceeeeEEEEecccHHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCEEEEEEecCcHHHHHHHHHH
Confidence 22 3 348999999965554 432 2 467789999999999876 367889999
Q ss_pred HHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHH
Q psy17090 284 SENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYF 363 (373)
Q Consensus 284 a~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l 363 (373)
++.||++ ++|+++ .. .++++++++|++.|+|++|+||++|+++++|+||++.++ ++..++++++++.+
T Consensus 385 a~~LR~~-irVelD-~~----~slgkkir~A~~~Gip~~IIIG~~El~~g~VtvR~r~t~------eq~~v~l~el~~~l 452 (456)
T PRK04173 385 YAELRKD-FNVDYD-DS----GSIGKRYRRQDEIGTPFCITVDFDTLEDNTVTIRDRDTM------EQVRVKIDELKDYL 452 (456)
T ss_pred HHHHHhc-CEEEEe-CC----CCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCC------ceEEEeHHHHHHHH
Confidence 9999999 999998 44 699999999999999999999999999999999999999 99999999999888
Q ss_pred HHH
Q psy17090 364 YKK 366 (373)
Q Consensus 364 ~~~ 366 (373)
++.
T Consensus 453 ~~~ 455 (456)
T PRK04173 453 AEK 455 (456)
T ss_pred Hhh
Confidence 653
No 29
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.92 E-value=2e-22 Score=205.64 Aligned_cols=298 Identities=13% Similarity=0.165 Sum_probs=197.8
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeec-eeecCCCC--CC--CCcceeeeEEEEEcCCCch
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGP-MFRHERPQ--YG--RYRQFYQIGVEAIGFPGPD 74 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~-vfR~~~~~--~g--r~ref~Q~g~eiig~~~~~ 74 (373)
||.+ +. +++.++|||..++++.-++..... ++++|+|+|.+|+ +||+|.++ .| |.|||+|.++++|..+...
T Consensus 273 my~v-~~-~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eq 350 (613)
T PRK03991 273 QYRV-KS-DKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQ 350 (613)
T ss_pred ceEe-cC-CCceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHH
Confidence 6776 55 678999999999999888765433 3468999999999 99999654 34 8899999999999986323
Q ss_pred hh---HHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhH
Q psy17090 75 ID---AELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLII 151 (373)
Q Consensus 75 ~d---~Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~ 151 (373)
+. .+++.++.++++.||++ +.+.++..+-+ .......|.+.+.... ++ . .+....+..
T Consensus 351 a~~e~~~~l~~~~~i~~~lGl~-~~~~~~~t~df--~~~~~~~l~~~l~~~g----~~--~-------~~~~~~g~~--- 411 (613)
T PRK03991 351 AMEEFEKQYEMILETGEDLGRD-YEVAIRFTEDF--YEENKDWIVELVKREG----KP--V-------LLEILPERK--- 411 (613)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-eEEEecCHHHH--hhhHHHHHHHHHHHcC----CC--E-------EecccCCcc---
Confidence 33 45788999999999996 77776542100 0000111111111100 00 0 000000000
Q ss_pred HHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCC-cEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHh
Q psy17090 152 REILINAPKLLDYLEKDSLDHFYGIQKILNYNNI-SYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKK 230 (373)
Q Consensus 152 ~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~-~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~ 230 (373)
. ...|++ +. ...+.+.+ .+.+ .+++|+.....+ |+.| .+..|
T Consensus 412 -~--~yg~ki-e~---~~~d~~gr------~~q~~T~qld~~~~~~f----~l~y---~d~~g----------------- 454 (613)
T PRK03991 412 -H--YWVLKV-EF---AFIDSLGR------PIENPTVQIDVENAERF----GIKY---VDENG----------------- 454 (613)
T ss_pred -c--cCcCcE-EE---EEeCCCCC------EEEEeeeecCcccchhC----CCEE---ECCCC-----------------
Confidence 0 000111 00 00000000 0111 133333332222 1221 11111
Q ss_pred hcCCCCCee-e--eechHHHHHHHHHhh--cC--------CCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEE
Q psy17090 231 FSNKFVPAS-G--FAIGIERLIELIKKI--NI--------NHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILN 297 (373)
Q Consensus 231 f~~~~~pav-G--fai~le~l~~~l~~~--~~--------~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~ 297 (373)
....|.+ | ...+++|++.++.+. +. +|+|.+|.+|+|++.++.....|.++++.||++|++|+++
T Consensus 455 --~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~e~~~~~A~eIa~~Lr~~GirV~lD 532 (613)
T PRK03991 455 --EEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEAAGIRVDVD 532 (613)
T ss_pred --CEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1123422 3 234599999999774 33 6789999999999998888899999999999999999999
Q ss_pred eccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 298 CVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 298 ~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
+++ .++++++++|++.|+|++|+||++|+++|+|+||+++++ ++..|+++++++.+.+.+.
T Consensus 533 dr~----~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~------eq~~v~l~eli~~l~~~~~ 593 (613)
T PRK03991 533 DRD----ESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREES------EKVEMTLEELIERIKEETK 593 (613)
T ss_pred CCC----CCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCC------ceEEeeHHHHHHHHHHHHh
Confidence 987 899999999999999999999999999999999999999 9999999999999987664
No 30
>PLN02837 threonine-tRNA ligase
Probab=99.91 E-value=3.9e-22 Score=205.00 Aligned_cols=299 Identities=15% Similarity=0.165 Sum_probs=203.8
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCC--CC--CCcceeeeEEEEEcCCCch-
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQ--YG--RYRQFYQIGVEAIGFPGPD- 74 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~--~g--r~ref~Q~g~eiig~~~~~- 74 (373)
||++.|. +++.++|||..++.++-++..... ++++|+|++.+|+|||+|..+ .| |.|||+|.+.++|..++..
T Consensus 293 mf~~~~~-~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~ 371 (614)
T PLN02837 293 MYDQMDI-EDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIK 371 (614)
T ss_pred cccccCC-CCceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHH
Confidence 7888898 899999999999988877765432 346899999999999998753 24 8899999999999877542
Q ss_pred -hhHHHHHHHHHHHHHCCCCceEEEeCCCcC--h---hhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccC
Q psy17090 75 -IDAELIIMCSRLWKNLNLKNICLELNSIGN--F---NERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN 148 (373)
Q Consensus 75 -~d~Evi~l~~~~l~~lg~~~~~i~i~~~~~--~---~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~ 148 (373)
.-.+++.++.++++.||++.+.+.++.... . +........+.+.+... ++ ... ..
T Consensus 372 ~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~----~~-----------~~~----~~ 432 (614)
T PLN02837 372 DEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDK----GW-----------EYK----VD 432 (614)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHc----CC-----------Cce----eC
Confidence 124578899999999999878888876420 0 00000011111111110 00 000 00
Q ss_pred hhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCC-cEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchh
Q psy17090 149 LIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNI-SYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFL 227 (373)
Q Consensus 149 ~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~-~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L 227 (373)
++..++ ..|++ +.. ..+.+.+ .+.+ ++++|+.+...++ +.| ....|
T Consensus 433 ~g~~af--ygpki-d~~---~~d~~gr------~~q~~tiqldf~~~~~f~----l~y---~~~d~-------------- 479 (614)
T PLN02837 433 EGGGAF--YGPKI-DLK---IEDALGR------KWQCSTIQVDFNLPERFD----ITY---VDSNS-------------- 479 (614)
T ss_pred CCcccc--cCcce-eeE---eeccCCc------eeeecceeEeecchhhcC----cEE---ECCCC--------------
Confidence 000000 01222 000 0000000 1111 3556665554442 222 22111
Q ss_pred HHhhcCCCCCee---eeechHHHHHHHHHhh--cCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCc
Q psy17090 228 IKKFSNKFVPAS---GFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNN 302 (373)
Q Consensus 228 ~~~f~~~~~pav---Gfai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~ 302 (373)
....|-+ +.--++||++.+|.+. +.+|+|.+|.+|+|+|.++.....+.++++.||++|++|++ +.+
T Consensus 480 -----~~~~pv~ih~~~~G~~eRlia~Lie~~~g~~P~~laP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev-~~~-- 551 (614)
T PLN02837 480 -----EKKRPIMIHRAILGSLERFFGVLIEHYAGDFPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEV-CHG-- 551 (614)
T ss_pred -----CccCCEEEEcCCccCHHHHHHHHHHHcCCCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-eCC--
Confidence 0122322 1111799999999885 66777899999999999888889999999999999999999 455
Q ss_pred cccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 303 IHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 303 ~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
.++++++++|++.|+|++|+||++|+++++|+||++.++ ++..++++++++.+.+.+.
T Consensus 552 --~slgkkir~A~~~gip~~IiIG~~E~e~~~VtVr~r~~g------eq~~v~~~el~~~l~~~~~ 609 (614)
T PLN02837 552 --ERLPKLIRNAETQKIPLMAVVGPKEVETRTLTVRSRHGG------ELGTMPVDDFINRIQLAVE 609 (614)
T ss_pred --CCHHHHHHHHHHcCCCEEEEEcchhhhcCEEEEEECCCC------ceeEeeHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999 9999999999999987764
No 31
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.89 E-value=1.6e-21 Score=194.58 Aligned_cols=270 Identities=14% Similarity=0.145 Sum_probs=182.1
Q ss_pred CeEeeecCC----CceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCC---CCCCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELN----GDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQ---YGRYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~----G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~---~gr~ref~Q~g~eiig~~~ 72 (373)
||.+.|. + ++.++|||+.|++++.+++.... ++++|+|+|++++|||+|.++ .+|.|||+|.+.+.+-.+.
T Consensus 85 ~f~v~~~-g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~ 163 (472)
T TIGR00408 85 VYWITHG-GLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATA 163 (472)
T ss_pred cEEEecC-CCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCH
Confidence 7899887 6 48999999999999988765433 346899999999999999764 3689999999999554443
Q ss_pred chhh---HHHHHHHHHHHH-HCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccC
Q psy17090 73 PDID---AELIIMCSRLWK-NLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN 148 (373)
Q Consensus 73 ~~~d---~Evi~l~~~~l~-~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~ 148 (373)
..++ .+++.+..+++. .||++ +.+.....+ ..+... .. ..+..
T Consensus 164 e~a~~e~~~~l~~y~~i~~~~lglp-~~~~~~~~~------------ek~~ga--~~-----------------~~~~e- 210 (472)
T TIGR00408 164 EEAEEQVLRALDIYKEFIENSLAIP-YFVGRKPEW------------EKFAGA--EY-----------------TWAFE- 210 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCe-EEEEecCch------------hhcCCc--cc-----------------eEEEe-
Confidence 3344 346788889997 89986 333221100 000000 00 00000
Q ss_pred hhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCC--CCCCCCccceEEEEEeCCCCCccceeccCccch
Q psy17090 149 LIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKL--VRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDF 226 (373)
Q Consensus 149 ~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~--~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~ 226 (373)
.. .++. +.+.+.-.++++. .+.+ ++.|. +..|
T Consensus 211 -----------~~----~~dg-----------r~~q~~t~~~Lg~~~sk~f----~i~y~---~~~g------------- 244 (472)
T TIGR00408 211 -----------TI----MPDG-----------RTLQIATSHNLGQNFAKTF----EIKFE---TPTG------------- 244 (472)
T ss_pred -----------EE----EcCC-----------CEEEEeeeecccccccHhc----CCEEE---CCCC-------------
Confidence 00 0000 0001111112211 1111 22221 1111
Q ss_pred hHHhhcCCCCCeeeeechH-HHHHHHHHhh-----c-CCCCCCCCceEEEEEc--C----chhHHHHHHHHHHHHHcCCe
Q psy17090 227 LIKKFSNKFVPASGFAIGI-ERLIELIKKI-----N-INHNFSHQCDIYIVHV--G----KEAELKAFVLSENLRTLGLK 293 (373)
Q Consensus 227 L~~~f~~~~~pavGfai~l-e~l~~~l~~~-----~-~~~~~~~~~~v~v~~~--~----~~~~~~~~~la~~Lr~~Gi~ 293 (373)
.....--+++|+ +|++.++.+. | ..|++.+|.+|.|+|+ + ......+.++++.||++|++
T Consensus 245 -------~~~~~h~~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~gir 317 (472)
T TIGR00408 245 -------DKEYAYQTSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFR 317 (472)
T ss_pred -------CEEeeEEccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 111111134444 9999998643 3 2466788999999996 3 24678899999999999999
Q ss_pred EEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 294 VILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 294 v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
|++++++ .++++++++|++.|+|++|+||++|+++|+|+||+++++ ++..|+++++++.+.+.+
T Consensus 318 v~lD~r~----~s~gkk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~------eq~~v~l~el~~~l~~~l 381 (472)
T TIGR00408 318 VHIDDRD----NRPGRKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTG------EKYQVSLDQLEERVVELL 381 (472)
T ss_pred EEEECCC----CCHHHHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCC------ceEEEEHHHHHHHHHHHH
Confidence 9999887 799999999999999999999999999999999999999 999999999998886654
No 32
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.87 E-value=1.6e-20 Score=187.84 Aligned_cols=266 Identities=14% Similarity=0.187 Sum_probs=178.9
Q ss_pred CeEeeecCC----CceEeecCCC----hHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCC--CCCcceeeeEEEEEcC
Q psy17090 1 MYSFIDELN----GDNLSLRPEG----TASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQY--GRYRQFYQIGVEAIGF 70 (373)
Q Consensus 1 m~~f~D~~~----G~~l~LRpD~----T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~--gr~ref~Q~g~eiig~ 70 (373)
||.+.|. + ++.++|||+. |..+++++.++ +++|+|+|++++|||+|.+.. .|.|||+|.+.+++-.
T Consensus 91 ~~~v~~~-~~~~~~e~l~LrPtsE~~i~~~~~~~i~Sy---rdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~ 166 (477)
T PRK08661 91 VAWVTHG-GGEKLEEKLALRPTSETIIYPMYKKWIQSY---RDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHA 166 (477)
T ss_pred cEEEEcc-CCCccCceEEEecCCcHHHHHHHHhhhcch---hhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeC
Confidence 6888887 6 4689999999 66777766543 368999999999999986654 5899999999998765
Q ss_pred CCchhhH---HHHHHHHHHH-HHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcc
Q psy17090 71 PGPDIDA---ELIIMCSRLW-KNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDS 146 (373)
Q Consensus 71 ~~~~~d~---Evi~l~~~~l-~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~ 146 (373)
+...++. +++.+..+++ +.||++ +.+..... . ..+... .. ... ++.
T Consensus 167 ~~eea~~e~~~~l~~y~~i~~~~Lglp-~~~~~~~~--------~----ekf~ga--~~------------~~~---ie~ 216 (477)
T PRK08661 167 TEEEAEEETLEMLEIYKEFFEDYLAIP-VIIGKKTE--------W----EKFAGA--DY------------TYT---IEA 216 (477)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCe-EEEEecCh--------H----HhhCCC--cc------------eeE---EEE
Confidence 5444443 4677788899 888886 33221110 0 000000 00 000 000
Q ss_pred cChhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCc---E-EEecCCCCCCCCccceEEEEEeCCCCCccceeccC
Q psy17090 147 KNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNIS---Y-KINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGG 222 (373)
Q Consensus 147 ~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~---i-~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GG 222 (373)
. + | + ...+. + .++..+.+.+ ++.| .+..|..
T Consensus 217 ~-------~---~--------d-------------gr~~q~gt~~~Lg~~~s~~f----~i~y---~d~~g~~------- 251 (477)
T PRK08661 217 M-------M---P--------D-------------GKALQAGTSHYLGQNFAKAF----DIKF---QDKDGKL------- 251 (477)
T ss_pred E-------e---C--------C-------------CCEEEEEEecccccchhHhc----CCEE---ECCCCCE-------
Confidence 0 0 0 0 00001 0 0111111111 1222 1111100
Q ss_pred ccchhHHhhcCCCCCeeeeechHHHHHHHHHhh-----c-CCCCCCCCceEEEEEc------CchhHHHHHHHHHHHHHc
Q psy17090 223 RYDFLIKKFSNKFVPASGFAIGIERLIELIKKI-----N-INHNFSHQCDIYIVHV------GKEAELKAFVLSENLRTL 290 (373)
Q Consensus 223 RYD~L~~~f~~~~~pavGfai~le~l~~~l~~~-----~-~~~~~~~~~~v~v~~~------~~~~~~~~~~la~~Lr~~ 290 (373)
. + ....+ ++++ +|++.++.+. | ..|++.+|.+|+|+|. ++.....+.++++.||++
T Consensus 252 --~-----~--v~~~s--~G~~-~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~ 319 (477)
T PRK08661 252 --E-----Y--VHQTS--WGVS-TRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKA 319 (477)
T ss_pred --e-----e--eEEec--ccHH-HHHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHC
Confidence 0 0 11222 3344 9999998763 2 2466788999999998 455678899999999999
Q ss_pred CCeEEEEe-ccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 291 GLKVILNC-VFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 291 Gi~v~~~~-~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
|++|++++ +. .++++++++|+..|+|++|+||++|+++|+|+|++++++ ++..|+++++++.+.+.+
T Consensus 320 GirV~lD~r~~----~s~gkK~~~ae~~GvP~~IiIG~~ele~~~V~ik~rdtg------ek~~v~~~el~~~l~~~l 387 (477)
T PRK08661 320 GIRVKLDDRSD----KTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVRRDTL------EKETVPLDELVEKVPELL 387 (477)
T ss_pred CCEEEEECCCC----CCHHHHHHHHHHCCCCEEEEECcchhhcCeEEEEECCCC------ceEEEEHHHHHHHHHHHH
Confidence 99999998 55 899999999999999999999999999999999999999 999999999999887654
No 33
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=6.6e-21 Score=191.20 Aligned_cols=300 Identities=17% Similarity=0.231 Sum_probs=214.1
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCC--CC--CCcceeeeEEEEEcCCCchh
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQ--YG--RYRQFYQIGVEAIGFPGPDI 75 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~--~g--r~ref~Q~g~eiig~~~~~~ 75 (373)
||.+ .. .++.++|||..|+..+.++..... ++++|+|++.+|.|||+|.++ .| |.|.|+|-+++||...++..
T Consensus 266 mf~~-~~-~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~ 343 (589)
T COG0441 266 MFLT-ES-DDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIK 343 (589)
T ss_pred ceee-cc-CChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccceeccHHHHH
Confidence 5555 33 558999999999999998875443 347899999999999999876 35 89999999999999965433
Q ss_pred --hHHHHHHHHHHHHHCCCCceEEEeCCCc-ChhhHHHH---HHHHHHHHHhccccccccHHHHHHhhhchhhhhcccCh
Q psy17090 76 --DAELIIMCSRLWKNLNLKNICLELNSIG-NFNERKKY---CIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNL 149 (373)
Q Consensus 76 --d~Evi~l~~~~l~~lg~~~~~i~i~~~~-~~~~~~~~---~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~ 149 (373)
-.+++.++.++++.+|+++|.+.++.+. .+.+...| ...|...+.... ...... +
T Consensus 344 ~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~k~ig~d~~W~~a~~~l~~al~~~~-----------------~~~~~~--~ 404 (589)
T COG0441 344 DEFKGILELILEVYKDFGFTDYEVKLSTRPKFIGSDEMWDKAEAALREALKEIG-----------------VEYVEE--P 404 (589)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEecCCcccCChhhhHHHHHHHHHHHHhhC-----------------ceeeec--C
Confidence 2668899999999999988999988763 11111111 111111111110 000000 0
Q ss_pred hHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCC-cEEEecCCCCCCCCccceEEEE-EeCCCCCccceeccCccchh
Q psy17090 150 IIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNI-SYKINTKLVRGMDYYNRTVFEW-TTDKLGSQNSICGGGRYDFL 227 (373)
Q Consensus 150 ~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~-~i~~D~~~~r~~~YYtG~vFe~-~~~~~g~~~~ia~GGRYD~L 227 (373)
+-.. -..|++. + ...+.|.+ .+.+ .|++|+.+...++ + |+...+
T Consensus 405 G~~a--FyGPKid-~---~v~Dalgr------~~q~~TIQlDf~lpeRF~--------l~Yv~~d~-------------- 450 (589)
T COG0441 405 GEGA--FYGPKID-F---QVKDALGR------EWQLGTIQLDFNLPERFD--------LEYVDEDG-------------- 450 (589)
T ss_pred CceE--EECcccc-e---EEEeccCc------ceecceEEEecCChhhce--------EEEEcCCC--------------
Confidence 0000 0123321 0 00111111 1222 4888988875542 3 233222
Q ss_pred HHhhcCCCCC---eeeeechHHHHHHHHHhh--cCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCc
Q psy17090 228 IKKFSNKFVP---ASGFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNN 302 (373)
Q Consensus 228 ~~~f~~~~~p---avGfai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~ 302 (373)
.+..| .++..-.++|.+.+|.+. |..|.|.+|.+|.|+|++......|.++++.|++.|++|+++.++
T Consensus 451 -----~~~~PvmiHrai~GSiERfi~iLiE~~~G~~P~WLaPvQv~VipV~~~~~~ya~~v~~~L~~~giRvdvD~~~-- 523 (589)
T COG0441 451 -----EKKRPVIIHRAILGSIERFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDRN-- 523 (589)
T ss_pred -----CccCCEEEEeccchhHHHHHHHHHHhccCCCcccCCccEEEEEEeChHHHHHHHHHHHHHHHcCCeeeecccc--
Confidence 11223 334556899999999874 677889999999999999888899999999999999999999997
Q ss_pred cccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHHhh
Q psy17090 303 IHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIKN 370 (373)
Q Consensus 303 ~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~~~ 370 (373)
.+++++++.|...++|++++||++|++++.|.||.+.+. ++..++++++++.+++.+...
T Consensus 524 --e~l~kKIR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~------~~~~~~l~e~i~~ik~e~~~~ 583 (589)
T COG0441 524 --EKLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRRRGGK------QQKSMTLEELVEELKKEIEGR 583 (589)
T ss_pred --cchHHHHHHHHhcCCCEEEEEchhhhccCceEEEEccCC------ccccccHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999 888899999999999887654
No 34
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.79 E-value=7.9e-19 Score=160.48 Aligned_cols=101 Identities=27% Similarity=0.388 Sum_probs=90.0
Q ss_pred CeEeeecCC----CceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCC---CCCCcceeeeEEEEEcCC-
Q psy17090 1 MYSFIDELN----GDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQ---YGRYRQFYQIGVEAIGFP- 71 (373)
Q Consensus 1 m~~f~D~~~----G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~---~gr~ref~Q~g~eiig~~- 71 (373)
||+|.|. + |+.++||||.|+|++|+++++... .++|+|+||+|+|||+|.++ .+|.|||+|.|+|++|.+
T Consensus 48 ~~~~~~~-~~~~~~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~ 126 (235)
T cd00670 48 MYTFEDK-GRELRDTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPE 126 (235)
T ss_pred cCeeccC-cccccCCeEEEecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHH
Confidence 7889888 7 899999999999999998865433 46899999999999999776 578999999999999998
Q ss_pred -CchhhHHHHHHHHHHHHHCCCCceEEEeCCCc
Q psy17090 72 -GPDIDAELIIMCSRLWKNLNLKNICLELNSIG 103 (373)
Q Consensus 72 -~~~~d~Evi~l~~~~l~~lg~~~~~i~i~~~~ 103 (373)
+..++.|++.++.++|+.||++ +.+.+++.+
T Consensus 127 ~~~~~~~e~~~~~~~~l~~lgl~-~~i~~~~~~ 158 (235)
T cd00670 127 EAEEERREWLELAEEIARELGLP-VRVVVADDP 158 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc-EEEEEccCh
Confidence 6778999999999999999994 999999864
No 35
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.72 E-value=1.3e-15 Score=152.34 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=100.8
Q ss_pred eeechHHHHHHHHHhhc--------------CCCCCCCCceEEEEEcCch--hHHHHHHHHHHHHHcCCeEEEEeccCcc
Q psy17090 240 GFAIGIERLIELIKKIN--------------INHNFSHQCDIYIVHVGKE--AELKAFVLSENLRTLGLKVILNCVFNNI 303 (373)
Q Consensus 240 Gfai~le~l~~~l~~~~--------------~~~~~~~~~~v~v~~~~~~--~~~~~~~la~~Lr~~Gi~v~~~~~~~~~ 303 (373)
=-|+|+|||+.++.+.+ .+|++.+|.+|+|++.++. ....+.++++.||.+|++|+++..+
T Consensus 419 epS~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~~el~~~A~eIa~~LR~~GI~VeiD~s~--- 495 (551)
T TIGR00389 419 EPSFGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNKEELKEIAKEIFQALRKTGIRIKYDDSG--- 495 (551)
T ss_pred EcccCHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC---
Confidence 45678899998876532 1255668999999998843 6788999999999999999998865
Q ss_pred ccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHH
Q psy17090 304 HESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKK 366 (373)
Q Consensus 304 ~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~ 366 (373)
++++++++|++.|+|++|+||++++++++|+||+++++ +|..++++++++.+.+.
T Consensus 496 --sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~------eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 496 --TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSM------KQVRVKIKELPSYIKKL 550 (551)
T ss_pred --CHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCC------ceEEeeHHHHHHHHHhh
Confidence 49999999999999999999999999999999999999 99999999999888753
No 36
>PLN02734 glycyl-tRNA synthetase
Probab=99.70 E-value=3.9e-15 Score=151.17 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=100.1
Q ss_pred eeechHHHHHHHHHhhc-------------CCCCCCCCceEEEEEcCc--hhHHHHHHHHHHHHHcCCeEEEEeccCccc
Q psy17090 240 GFAIGIERLIELIKKIN-------------INHNFSHQCDIYIVHVGK--EAELKAFVLSENLRTLGLKVILNCVFNNIH 304 (373)
Q Consensus 240 Gfai~le~l~~~l~~~~-------------~~~~~~~~~~v~v~~~~~--~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~ 304 (373)
==|+|++||+.++.+.. .+|++.+|.+|.|+|... .....+.++++.||++|++|.++.++
T Consensus 533 EPS~GIgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~~---- 608 (684)
T PLN02734 533 EPSFGIGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDITG---- 608 (684)
T ss_pred ecCccHHHHHHHHHHHHhccccCCCcceEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECCC----
Confidence 34467779998886632 146789999999998864 35678999999999999999999877
Q ss_pred cCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHHh
Q psy17090 305 ESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIK 369 (373)
Q Consensus 305 ~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~~ 369 (373)
.++++++++|++.|+|++|+||. +|+|+||+++++ +|..|+++++++.+.+.+..
T Consensus 609 ~SIGKRyrrADeiGIPf~ItIG~----dgtVTIRdRdsg------eQ~rV~ldeLv~~I~~li~~ 663 (684)
T PLN02734 609 TSIGKRYARTDELGVPFAVTVDS----DGSVTIRERDSK------DQVRVPVEEVASVVKDLTDG 663 (684)
T ss_pred CCHhHHHHHHHHcCCCEEEEECC----CCeEEEEECCCC------ceEEeeHHHHHHHHHHHHcC
Confidence 89999999999999999999996 799999999999 99999999999999877653
No 37
>KOG1637|consensus
Probab=99.66 E-value=2.6e-15 Score=142.75 Aligned_cols=300 Identities=15% Similarity=0.225 Sum_probs=199.7
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCC--C--CCCcceeeeEEEEEcCCCch-
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQ--Y--GRYRQFYQIGVEAIGFPGPD- 74 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~--~--gr~ref~Q~g~eiig~~~~~- 74 (373)
||+| +. ..+.++|.|+.+++..-+.+.... ++++|+|+.-+|.++|+|-++ + -|.|.|.|-+++||+..++.
T Consensus 238 mF~~-e~-eke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~ 315 (560)
T KOG1637|consen 238 MFKF-EV-EKEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVK 315 (560)
T ss_pred ceee-ee-chhhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHH
Confidence 7777 44 556799999999999888775443 347899999999999998765 2 38899999999999987653
Q ss_pred hh-HHHHHHHHHHHHHCCCCceEEEeCCC-----cChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccC
Q psy17090 75 ID-AELIIMCSRLWKNLNLKNICLELNSI-----GNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN 148 (373)
Q Consensus 75 ~d-~Evi~l~~~~l~~lg~~~~~i~i~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~ 148 (373)
.+ .-++..+..+..-+|+. +.+.++.+ |.++...+....|.+.+.... .|+. + |
T Consensus 316 ~Eik~~l~fl~~vY~~fgf~-f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g---------------~pw~-l---N 375 (560)
T KOG1637|consen 316 EEIKGCLDFLDYVYGVFGFT-FKLNLSTRPEKFLGDLETWDEAEFKLEEALNESG---------------EPWV-L---N 375 (560)
T ss_pred HHHHHHHHHHHHHHHhcccc-ceeEeccChHHhccCHHHHHHHHHHHHHHHHHhC---------------CCce-e---c
Confidence 22 23566666667777764 78888775 222222222222332222210 0110 0 1
Q ss_pred hhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhC-CC-cEEEecCCCCCCCCccceEEEEEeCCCCC-ccceeccCccc
Q psy17090 149 LIIREILINAPKLLDYLEKDSLDHFYGIQKILNYN-NI-SYKINTKLVRGMDYYNRTVFEWTTDKLGS-QNSICGGGRYD 225 (373)
Q Consensus 149 ~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~-g~-~i~~D~~~~r~~~YYtG~vFe~~~~~~g~-~~~ia~GGRYD 225 (373)
++.-.+ ..|++- . .+.+.+... .+ .|++|+-+.-.++-+ | ....|. ..+|
T Consensus 376 ~GDGAF--YGPKID----i-------~l~Dal~r~hQcaTIQLDFqLP~rFdL~----y---~~~~g~~erPV------- 428 (560)
T KOG1637|consen 376 PGDGAF--YGPKID----I-------TLDDALGRKHQCATIQLDFQLPIRFDLE----Y---ETEDGDLERPV------- 428 (560)
T ss_pred CCCccc--ccceee----e-------EhhhhcCcccceeeeeecccChhhcCce----e---ecccccccchh-------
Confidence 110111 123331 0 111111111 22 488888776443311 1 111120 0010
Q ss_pred hhHHhhcCCCCCeeeeechHHHHHHHHHhh--cCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCcc
Q psy17090 226 FLIKKFSNKFVPASGFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNI 303 (373)
Q Consensus 226 ~L~~~f~~~~~pavGfai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~ 303 (373)
++. +.-.| +++|++++|.+. |.+|-|..|.++.|+++++.....|-++..+|+.+|+-++++.++
T Consensus 429 -mIH------RAIlG---SvERmiaiL~E~~~gkwPFWlSPRq~~vIpVse~~~~ya~~V~~ql~~a~f~~Dld~t~--- 495 (560)
T KOG1637|consen 429 -MIH------RAILG---SVERMIAILLESYGGKWPFWLSPRQAVVIPVSEGPLDYATSVQKQLEEAGFYVDLDPTD--- 495 (560)
T ss_pred -hHH------HHHhh---hHHHHHHHHHHHhCCCCCeeeccceEEEEECCCcchhHHHHHHHHHHhhhceeecCCcc---
Confidence 110 11123 799999999885 566778999999999999888999999999999999999999988
Q ss_pred ccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHH
Q psy17090 304 HESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKK 366 (373)
Q Consensus 304 ~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~ 366 (373)
.++.+.++.|...+++++++||++|.+.++|.||.+++... ..+..++++++.+.+.+.
T Consensus 496 -~tl~kkir~Aqla~yn~i~VVGdkE~~~~~vnVr~Rd~~~~---~~~~~~tie~~~~~~~~l 554 (560)
T KOG1637|consen 496 -STLRKKIRNAQLAHYNFIFVVGDKEVETGRVNVRTRDNRDN---KTESEMTIEELSDEFKEL 554 (560)
T ss_pred -chHHHHHhhhhhcceeEEEEEchhhhhcCceeeeccccccc---cccceeeHHHHHHHHHHh
Confidence 89999999999999999999999999999999999854410 156689999998887643
No 38
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.65 E-value=1.1e-14 Score=142.12 Aligned_cols=99 Identities=11% Similarity=0.221 Sum_probs=89.5
Q ss_pred CCCCCCceEEEEEcCch---hHHHHHHHHHHHHHcCC-eEEEEeccCccccCHHHHHHHHHHcCCCEEEEE-------cc
Q psy17090 259 HNFSHQCDIYIVHVGKE---AELKAFVLSENLRTLGL-KVILNCVFNNIHESFKSQMKRANASNANFAAII-------GE 327 (373)
Q Consensus 259 ~~~~~~~~v~v~~~~~~---~~~~~~~la~~Lr~~Gi-~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~viv-------g~ 327 (373)
|+|.+|.+|.|+|+... ....|.++++.|+++|+ +|+++. . .+++++++.|+..|+||+|+| |+
T Consensus 429 p~wLAPvQVaVLPLs~~~~~l~eyAkeI~~~L~~~Gi~rv~~Dd-s----esIGKKyRraDeiGiPy~ITVD~~Tl~dGd 503 (539)
T PRK14894 429 KPRLAPIKVAVFPLKRNHEGLVATAKAVRRQLQVGGRMRTVYDD-T----GAIGKLYRRQDEIGTPFCITVDFDTIGQGK 503 (539)
T ss_pred CcCCCCceEEEEeccccccchHHHHHHHHHHHHHCCCceEEEcC-C----CCHhHHHHhhhccCCCEEEEEecccccccc
Confidence 47899999999999853 33789999999999998 999987 4 699999999999999999999 78
Q ss_pred CcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 328 NEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 328 ~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
+|.++++|+||+++++ +|..|+++++++.|.+.+.
T Consensus 504 kE~e~gTVTVR~RDs~------eQ~rV~ideli~~L~~~~~ 538 (539)
T PRK14894 504 DPALAGTVTVRDRDTM------AQERVPISELEAYLRDRVS 538 (539)
T ss_pred chhhcCeEEEEEeCCC------eEEEEEHHHHHHHHHHHhc
Confidence 8888899999999999 9999999999999987753
No 39
>KOG2324|consensus
Probab=99.64 E-value=1.1e-15 Score=141.12 Aligned_cols=303 Identities=15% Similarity=0.190 Sum_probs=179.3
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC--CCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCCchh
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL--IYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPDI 75 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~--~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~~~~ 75 (373)
||+|.|+ +|+.+||.|-..-.+.+.+|+... +..+|+++|++|+.||+| +|..| |-|||+..|...|..+...|
T Consensus 98 l~rl~Dr-~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA 176 (457)
T KOG2324|consen 98 LFRLHDR-KGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETA 176 (457)
T ss_pred heEeecc-CCCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHH
Confidence 6999999 999999999888888888776432 346899999999999998 88766 77999999999998765432
Q ss_pred ---hHHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccCh---
Q psy17090 76 ---DAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNL--- 149 (373)
Q Consensus 76 ---d~Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~--- 149 (373)
-.-|-+....+|+.|+++-+.+. .+.|....... .-.++... +.++. +..|.+-
T Consensus 177 ~qTy~~v~~aY~~iFkqL~~pfVkv~-AdsG~iGG~vS---hEfhl~~~------vgED~----------l~~C~~C~~s 236 (457)
T KOG2324|consen 177 QQTYQLVDQAYDRIFKQLGLPFVKVW-ADSGDIGGEVS---HEFHLIHP------VGEDT----------LMSCPSCGYS 236 (457)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEe-ecccccCceee---eeEeccCc------cCccc----------eeecCcCCcc
Confidence 23456677888999998633332 22232210000 00111111 22221 1111111
Q ss_pred hHHHHHhhChhhHhhhhHhHHH-HHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhH
Q psy17090 150 IIREILINAPKLLDYLEKDSLD-HFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLI 228 (373)
Q Consensus 150 ~~~~~l~~~~~l~~~~~~~~~~-~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~ 228 (373)
...+.+. .|+. ..|+.+.+ .|..+. +|++ ++.||-|..|.-- .++.. +
T Consensus 237 ~n~e~~~-~sk~--~~Cp~C~~~~L~~~~------~IEV--------gHtF~LG~kYS~~---lna~f-----------~ 285 (457)
T KOG2324|consen 237 KNSEDLD-LSKI--ASCPKCNEGRLTKTK------SIEV--------GHTFLLGTKYSKP---LNAKF-----------V 285 (457)
T ss_pred Cchhhhc-CCcc--ccCCcccCCCccccc------ceEE--------EEEEEeccccccc---cCcee-----------e
Confidence 0011111 1111 11222222 232222 3444 5566666654321 11100 0
Q ss_pred HhhcCCC--CCeeeeechHHHHHHHHHhhc------CCCCCCCCceEEEEEcC-chhHHHHHHHHHHHHHcC----CeEE
Q psy17090 229 KKFSNKF--VPASGFAIGIERLIELIKKIN------INHNFSHQCDIYIVHVG-KEAELKAFVLSENLRTLG----LKVI 295 (373)
Q Consensus 229 ~~f~~~~--~pavGfai~le~l~~~l~~~~------~~~~~~~~~~v~v~~~~-~~~~~~~~~la~~Lr~~G----i~v~ 295 (373)
.+.+++ .....++||+.||+.+..+-. .+|...+|.+|+++... +.....+.++..+|-... ..-+
T Consensus 286 -~~~gKpe~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~~~~~q~~~ev~~el~~~~~~~~l~~~ 364 (457)
T KOG2324|consen 286 -NVEGKPEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKKGSKSQRAQEVISELLNDEAVGNLHGE 364 (457)
T ss_pred -eecCCcceEEecceeccHHHHHHHHHHHhccccccccccccCcceeEEeccCCcchhhhHHHHHHHhhcchhhhhhccc
Confidence 011233 334458899999999887642 23445788999554444 333444556666555421 1123
Q ss_pred EEeccCccccCHHHHHHHHHHcCCCEEEEEcc-CcccCCeEEEEECCCCCCCCCccceeecHHHHHHHH
Q psy17090 296 LNCVFNNIHESFKSQMKRANASNANFAAIIGE-NEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYF 363 (373)
Q Consensus 296 ~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~-~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l 363 (373)
+.+++ +...++++.++.|++.|+|++|++|. .-..+..++|+-..++ +..++..+.+...+
T Consensus 365 iLldd-r~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~g------e~~~l~~~~~~~l~ 426 (457)
T KOG2324|consen 365 ILLDD-REELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWG------ESAELDKDGFMKLL 426 (457)
T ss_pred eeccc-hhhhhhHHhhhhHHhcCCCEEEEEcccccCCCceEEEEEeecC------ceeccchhhHHHHh
Confidence 33332 34579999999999999999999994 4446789999999888 76666666655444
No 40
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.61 E-value=5.1e-15 Score=115.74 Aligned_cols=90 Identities=32% Similarity=0.428 Sum_probs=85.8
Q ss_pred eEEEEEcCc---hhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCC
Q psy17090 266 DIYIVHVGK---EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRN 342 (373)
Q Consensus 266 ~v~v~~~~~---~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~ 342 (373)
+|+|+|.+. .....+.++++.||++|++|++++.+ .++++++++|...|+||++++|++|.++|.|+||++.+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~----~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~ 76 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSD----KSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDT 76 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSS----STHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTT
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCC----CchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCC
Confidence 588999998 77889999999999999999999977 99999999999999999999999999999999999999
Q ss_pred CCCCCCccceeecHHHHHHHHHH
Q psy17090 343 KYEDPTLKQISISFKDAENYFYK 365 (373)
Q Consensus 343 ~~~~~~~~~~~v~~~el~~~l~~ 365 (373)
+ ++..|+++|++++|++
T Consensus 77 ~------~~~~v~~~el~~~l~~ 93 (94)
T PF03129_consen 77 G------EQETVSLEELIEYLKE 93 (94)
T ss_dssp T------EEEEEECCHHHHHHHH
T ss_pred C------cEEEEEHHHHHHHHhh
Confidence 9 9999999999999975
No 41
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.9e-13 Score=131.68 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=103.0
Q ss_pred eeechHHHHHHHHHhhc-------------CCCCCCCCceEEEEEcCch--hHHHHHHHHHHHHHcCCeEEEEeccCccc
Q psy17090 240 GFAIGIERLIELIKKIN-------------INHNFSHQCDIYIVHVGKE--AELKAFVLSENLRTLGLKVILNCVFNNIH 304 (373)
Q Consensus 240 Gfai~le~l~~~l~~~~-------------~~~~~~~~~~v~v~~~~~~--~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~ 304 (373)
==|+|+||++-++.... ..|++.+|.+|+|+|.-.. ....+.++.+.|++.|+.|.++.++
T Consensus 420 EPSfGidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v~yDdsG---- 495 (558)
T COG0423 420 EPSFGIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYDDSG---- 495 (558)
T ss_pred ccCCCchHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecccchhHHHHHHHHHHHhcCceEEecCCC----
Confidence 44578899987776532 1256789999999998643 6678899999999999999888774
Q ss_pred cCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 305 ESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 305 ~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
|+++.++.+++.|.||.|.|+.+.+++++||||++++. +|..|+++||+.+|.+.+.
T Consensus 496 -sIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~------~QvRv~i~el~~~l~~~~~ 552 (558)
T COG0423 496 -SIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSM------EQVRVKIEELADYLRELIK 552 (558)
T ss_pred -cHhhhhhhccccCCceEEEecCCcccCCcEEEeecCch------heeeeeHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999 9999999999999988765
No 42
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.58 E-value=3.6e-14 Score=116.29 Aligned_cols=99 Identities=17% Similarity=0.239 Sum_probs=91.2
Q ss_pred CCCCCCCceEEEEEcC--chhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeE
Q psy17090 258 NHNFSHQCDIYIVHVG--KEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTL 335 (373)
Q Consensus 258 ~~~~~~~~~v~v~~~~--~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v 335 (373)
+|+|.++.+|+|++.+ +.....++++++.||++|++|++++. .++++++++|++.|++|++++|++|.+++++
T Consensus 20 ~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-----~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v 94 (121)
T cd00858 20 LPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-----GSIGRRYARQDEIGTPFCVTVDFDTLEDGTV 94 (121)
T ss_pred cCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-----CCHHHHHHHhHhcCCCEEEEECcCchhCCEE
Confidence 5778999999999998 77788999999999999999999875 4999999999999999999999999999999
Q ss_pred EEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 336 IIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 336 ~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
+||++.++ ++..++++++++++.+.+
T Consensus 95 ~lk~l~~~------~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 95 TIRERDSM------RQVRVKIEELPSYLRELI 120 (121)
T ss_pred EEEECCCC------ceEEEEHHHHHHHHHHHh
Confidence 99999999 999999999998887543
No 43
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.58 E-value=1.9e-14 Score=112.41 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=84.3
Q ss_pred CceEEEEEcCc---hhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEC
Q psy17090 264 QCDIYIVHVGK---EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDL 340 (373)
Q Consensus 264 ~~~v~v~~~~~---~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l 340 (373)
|.+|.|+|.+. .....+++++..||++|++|++++.. .++++++++|++.|+||++++|++|+++++++||++
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~----~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~ 76 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRN----ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVR 76 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCC----CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEEC
Confidence 47899999876 56788999999999999999999887 899999999999999999999999999999999999
Q ss_pred CCCCCCCCccceeecHHHHHHHHH
Q psy17090 341 RNKYEDPTLKQISISFKDAENYFY 364 (373)
Q Consensus 341 ~~~~~~~~~~~~~v~~~el~~~l~ 364 (373)
.++ ++..+++++++++++
T Consensus 77 ~~~------~~~~~~~~~~~~~l~ 94 (94)
T cd00861 77 KTG------EKEEISIDELLEFLQ 94 (94)
T ss_pred CCC------cceEEeHHHHHHhhC
Confidence 999 999999999988764
No 44
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.54 E-value=8e-14 Score=108.00 Aligned_cols=90 Identities=14% Similarity=0.239 Sum_probs=84.2
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCC
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNK 343 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~ 343 (373)
|.+|+|++.++.....+++++..||+.|++|++++.. .++++++++|++.|+++++++|.++..++.++++++.++
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~----~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~ 76 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRN----EKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGG 76 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCC
Confidence 4788899888888889999999999999999999987 899999999999999999999999999999999999999
Q ss_pred CCCCCccceeecHHHHHHHH
Q psy17090 344 YEDPTLKQISISFKDAENYF 363 (373)
Q Consensus 344 ~~~~~~~~~~v~~~el~~~l 363 (373)
++..++++++++.+
T Consensus 77 ------~~~~~~~~~~~~~~ 90 (91)
T cd00860 77 ------DLGSMSLDEFIEKL 90 (91)
T ss_pred ------ccceEcHHHHHHHh
Confidence 99999999988765
No 45
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.52 E-value=7.2e-15 Score=135.91 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=85.0
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCCchhh
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPDID 76 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~~~~d 76 (373)
||+|.|. +|+.++|||+.++++.-+++.... +.++|+|+||+|+|||+| +|+.| |.|||+|++++++|.+...+|
T Consensus 77 my~~~d~-~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~ 155 (255)
T cd00779 77 LLRLKDR-HGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLE 155 (255)
T ss_pred cEEEecC-CCCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHH
Confidence 7999999 999999999955555544332211 125899999999999999 98899 999999999999999877788
Q ss_pred H---HHHHHHHHHHHHCCCCceEEEeCCCcChh
Q psy17090 77 A---ELIIMCSRLWKNLNLKNICLELNSIGNFN 106 (373)
Q Consensus 77 ~---Evi~l~~~~l~~lg~~~~~i~i~~~~~~~ 106 (373)
+ |++.++.++|+.||++ +.+..++.|.+.
T Consensus 156 ~~~~~i~~~~~~il~~Lgl~-~~~~~~~~~~~g 187 (255)
T cd00779 156 ETYEKMYQAYSRIFKRLGLP-FVKVEADSGAIG 187 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCc-EEEEEecCCCCC
Confidence 8 7888899999999995 777777776543
No 46
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.52 E-value=6.9e-14 Score=132.29 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=85.4
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCCC----CCCcceeeeEEEEEcCCCch-
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQY----GRYRQFYQIGVEAIGFPGPD- 74 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~~----gr~ref~Q~g~eiig~~~~~- 74 (373)
||++ +. +|+.++|||+.|++++|++++... +.++|+|+||+|+|||+|.++. +|.|||+|.|+|+||.++..
T Consensus 76 my~~-~~-~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~ 153 (298)
T cd00771 76 MFPF-EE-EDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIK 153 (298)
T ss_pred ceEe-cc-CCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchH
Confidence 7888 56 789999999999999999886543 3468999999999999997642 58899999999999876542
Q ss_pred hh-HHHHHHHHHHHHHCCCCceEEEeCCCc
Q psy17090 75 ID-AELIIMCSRLWKNLNLKNICLELNSIG 103 (373)
Q Consensus 75 ~d-~Evi~l~~~~l~~lg~~~~~i~i~~~~ 103 (373)
++ .|++.++.++++.||+..+.|.+++..
T Consensus 154 ~e~~e~l~~~~~~l~~lgl~~~~i~l~~~~ 183 (298)
T cd00771 154 EEIKGVLDLIKEVYSDFGFFDYKVELSTRP 183 (298)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEEEcCh
Confidence 34 369999999999999988999999964
No 47
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.50 E-value=2.7e-13 Score=128.71 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=102.9
Q ss_pred eechHHHHHHHHHh------hcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHH
Q psy17090 241 FAIGIERLIELIKK------ININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRA 314 (373)
Q Consensus 241 fai~le~l~~~l~~------~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a 314 (373)
.-+.+||++-+... .+.+|+|.+|.+|+|++.+++....+++++..||++|++|++++.. .++++++++|
T Consensus 245 ~~~~~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~s----rSLgKQiK~A 320 (387)
T PRK14938 245 TYVDVGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLD----DSLGNKIRRA 320 (387)
T ss_pred EEEEecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHH
Confidence 34677777655422 3567889999999999998877889999999999999999999887 8999999999
Q ss_pred HHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHH
Q psy17090 315 NASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKK 366 (373)
Q Consensus 315 ~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~ 366 (373)
++.|++++|++|++|+++|+|+||++.++ +|..++++++.+++++.
T Consensus 321 dK~GaPfvIIIGedEle~gtVtIKdrdTg------EQ~~IsLdELie~Lkk~ 366 (387)
T PRK14938 321 GTEWIPFVIIIGEREVKTSTLTVKIRANN------EQKSMTVEELVKEIKRA 366 (387)
T ss_pred HHcCCCEEEEECchhhhCCeEEEEECCCC------ceEEEeHHHHHHHHHhC
Confidence 99999999999999999999999999999 99999999999988753
No 48
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.50 E-value=2.6e-13 Score=120.95 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=91.7
Q ss_pred CCCCCCCceEEEEEcCch------hHHHHHHHHHHHHHcCCeEEEEeccCcccc-CHHHHHHHHHHcCCCEEEEEccCcc
Q psy17090 258 NHNFSHQCDIYIVHVGKE------AELKAFVLSENLRTLGLKVILNCVFNNIHE-SFKSQMKRANASNANFAAIIGENEI 330 (373)
Q Consensus 258 ~~~~~~~~~v~v~~~~~~------~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~-sl~~~~~~a~~~gi~~~vivg~~e~ 330 (373)
+|++.+|.+|+|+|.+.. ....+.++++.||++|++|++++++ . ++++++++|+..|+|++|+||++|+
T Consensus 4 lP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~----~~s~g~K~~~ae~~GvP~~I~IG~~El 79 (202)
T cd00862 4 LPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRD----NYTPGWKFNDWELKGVPLRIEIGPRDL 79 (202)
T ss_pred CChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCC----CCCHhHHHHHHHhCCCCEEEEECcchh
Confidence 466789999999998644 5678999999999999999999987 6 9999999999999999999999999
Q ss_pred cCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 331 INNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 331 ~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
++|+|+|++++++ ++..++++++++.+.+.+.
T Consensus 80 e~g~V~v~~Rd~~------ek~~v~~~el~~~i~~ll~ 111 (202)
T cd00862 80 EKNTVVIVRRDTG------EKKTVPLAELVEKVPELLD 111 (202)
T ss_pred hCCEEEEEEecCC------cceEEEHHHHHHHHHHHHH
Confidence 9999999999999 9999999999998876543
No 49
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=99.50 E-value=2.5e-13 Score=125.68 Aligned_cols=100 Identities=16% Similarity=0.273 Sum_probs=89.1
Q ss_pred CCCceEEEEEcCchhH-HHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCc------ccCCe
Q psy17090 262 SHQCDIYIVHVGKEAE-LKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENE------IINNT 334 (373)
Q Consensus 262 ~~~~~v~v~~~~~~~~-~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e------~~~~~ 334 (373)
+++|||+|+++++..+ ..+++++..||++||+|++.++.. .|+++.+.+|+..||+|+|+|.+.+ -..+.
T Consensus 3 ~~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~---~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~ 79 (273)
T PF12745_consen 3 PSRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDAS---PSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKP 79 (273)
T ss_pred CCcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccC---CCHHHHHHHHHHCCCCEEEEEecccccccCCCccCc
Confidence 5789999999998876 899999999999999999977652 6999999999999999999999865 22346
Q ss_pred EEEEECCCCCCCCCccceeecHHHHHHHHHHHHHhh
Q psy17090 335 LIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIKN 370 (373)
Q Consensus 335 v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~~~ 370 (373)
++||++.++ ++.+|+.+||++||++++...
T Consensus 80 lKVK~l~~~------~e~dv~~~eLv~~l~~ei~~r 109 (273)
T PF12745_consen 80 LKVKSLEKK------KETDVDRDELVDWLQQEIRER 109 (273)
T ss_pred eEEeccCCC------cccccCHHHHHHHHHHHHHhh
Confidence 999999999 999999999999999998543
No 50
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.45 E-value=1.1e-12 Score=102.09 Aligned_cols=90 Identities=20% Similarity=0.326 Sum_probs=83.1
Q ss_pred CceEEEEEcCc---hhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEC
Q psy17090 264 QCDIYIVHVGK---EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDL 340 (373)
Q Consensus 264 ~~~v~v~~~~~---~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l 340 (373)
|.+|+|++.+. .....+++++..||..|++|++++.. .++++++++|++.|+++++++|++|+++++++++++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~----~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~ 76 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRE----RKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSR 76 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCC----cCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEEC
Confidence 46788998887 77889999999999999999998877 899999999999999999999999999999999999
Q ss_pred CCCCCCCCccceeecHHHHHHHH
Q psy17090 341 RNKYEDPTLKQISISFKDAENYF 363 (373)
Q Consensus 341 ~~~~~~~~~~~~~v~~~el~~~l 363 (373)
.++ ++..+++++++..+
T Consensus 77 ~~~------~~~~~~~~~~~~~i 93 (94)
T cd00738 77 DTG------ESETLHVDELPEFL 93 (94)
T ss_pred CCC------ceeEEEHHHHHhhc
Confidence 999 99999999987654
No 51
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.43 E-value=7.4e-13 Score=115.44 Aligned_cols=104 Identities=24% Similarity=0.371 Sum_probs=88.4
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC--CCCCeeEEEeeceeecC-CCC--CCCCcceeeeEEEEEcCC--Cc
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI--YDGPKRLWYSGPMFRHE-RPQ--YGRYRQFYQIGVEAIGFP--GP 73 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~--~~~p~k~~y~g~vfR~~-~~~--~gr~ref~Q~g~eiig~~--~~ 73 (373)
||++.|. +++.++|||+.+++++.++...... ..+|+|+|++|++||+| ++. ..|.|||+|.++++||.+ ..
T Consensus 46 ~~~~~~~-~~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~ 124 (173)
T PF00587_consen 46 MFKVKDR-GDEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSE 124 (173)
T ss_dssp SEEEEET-TTEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHH
T ss_pred eeeeeec-ccccEEeccccccceeeeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccH
Confidence 7999999 8899999999999999998875543 35899999999999999 665 468999999999999998 33
Q ss_pred hhhHHHHHHHHHHHHHCCCCceEEEeCCCcCh
Q psy17090 74 DIDAELIIMCSRLWKNLNLKNICLELNSIGNF 105 (373)
Q Consensus 74 ~~d~Evi~l~~~~l~~lg~~~~~i~i~~~~~~ 105 (373)
....+++.++.++++.||++++.+..++.+..
T Consensus 125 ~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~ 156 (173)
T PF00587_consen 125 EEFEELLELYKEILEKLGLEPYRIVLSSSGEL 156 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTSGCEEEEEEETCTS
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEcCCCcc
Confidence 46788999999999999997799999887653
No 52
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.37 E-value=1.4e-11 Score=101.65 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=89.3
Q ss_pred CCCCCCCceEEEEEcC---chhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCe
Q psy17090 258 NHNFSHQCDIYIVHVG---KEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNT 334 (373)
Q Consensus 258 ~~~~~~~~~v~v~~~~---~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~ 334 (373)
+|+..+|++|.|+|.+ +.....+.++++.|+++|++|.++.+.. ...+++++++.++..|+|+.|+||++.+++|+
T Consensus 21 ~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~-~~~~~G~k~~~~dliGiP~~I~IG~~~l~~g~ 99 (128)
T cd02426 21 LHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLET-QHSSLEQLLDKYDEMGVLFTLLISEQTLENGL 99 (128)
T ss_pred CCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcc-cccCHHHHHHhhhhcCCCEEEEECCCcccCCE
Confidence 4667899999999884 2355678899999999999998887650 01389999999999999999999999999999
Q ss_pred EEEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 335 LIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 335 v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
|++++++++ ++..|+++++++++.+.+
T Consensus 100 vei~~Rdt~------~k~~v~~~~l~~~i~~~~ 126 (128)
T cd02426 100 LQLRSRDTT------LKETIHISDLPDYLLRYI 126 (128)
T ss_pred EEEEECCCC------ceEEEeHHHHHHHHHHHh
Confidence 999999999 999999999999998654
No 53
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.36 E-value=4e-12 Score=118.08 Aligned_cols=101 Identities=23% Similarity=0.328 Sum_probs=84.3
Q ss_pred CeEeeecCCC----ceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNG----DNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G----~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~ 72 (373)
||.+.|. +| +.++|||+.|++++++++.... +.++|+|+|++++|||+| +|..| |.|||+|.++++++.+.
T Consensus 79 ~~~~~~~-~~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~ 157 (264)
T cd00772 79 LAVFKDA-GDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADA 157 (264)
T ss_pred ceEEEeC-CCCccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCH
Confidence 5888888 77 8999999999999999886543 246899999999999999 87788 99999999999998877
Q ss_pred chhhHHHHHHH---HHHHHHCC-CCceEEEeCCCc
Q psy17090 73 PDIDAELIIMC---SRLWKNLN-LKNICLELNSIG 103 (373)
Q Consensus 73 ~~~d~Evi~l~---~~~l~~lg-~~~~~i~i~~~~ 103 (373)
..++.|+..+. .++++.|| ++ +.+.....|
T Consensus 158 e~a~~e~~~~~~~~~~i~~~l~~lp-~~~~~~~~~ 191 (264)
T cd00772 158 EEADEEFLNMLSAYAEIARDLAAID-FIEGEADEG 191 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc-EEEEEcCCC
Confidence 77888876555 99999999 65 776665544
No 54
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.33 E-value=6.6e-12 Score=121.35 Aligned_cols=85 Identities=15% Similarity=0.269 Sum_probs=73.0
Q ss_pred ceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC
Q psy17090 11 DNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l 90 (373)
+.++||||+|++++|+++.+......|.|+||+|+|||++.++.++.|||+|+|++++|.+...+|+| .++.++|+.|
T Consensus 292 e~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDle--alL~e~Lr~L 369 (453)
T TIGR02367 292 KNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLE--AIIKDFLDHL 369 (453)
T ss_pred CceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHH--HHHHHHHHHC
Confidence 35899999999999998865332357999999999999999889999999999999999988776666 6999999999
Q ss_pred CCCceEEE
Q psy17090 91 NLKNICLE 98 (373)
Q Consensus 91 g~~~~~i~ 98 (373)
|++ +.+.
T Consensus 370 GId-feit 376 (453)
T TIGR02367 370 EID-FEIV 376 (453)
T ss_pred CCc-eEEe
Confidence 994 6663
No 55
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.29 E-value=3.4e-11 Score=92.62 Aligned_cols=89 Identities=31% Similarity=0.504 Sum_probs=81.1
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCC
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKY 344 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~ 344 (373)
++|+|++.+......+++++..||++|++|++++.+ .++++++++|...|+++++++++.+..+++++++++.++
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~----~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~- 76 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG----RKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETG- 76 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCC-
Confidence 478899988878889999999999999999998876 799999999999999999999988888899999999999
Q ss_pred CCCCccceeecHHHHHHHH
Q psy17090 345 EDPTLKQISISFKDAENYF 363 (373)
Q Consensus 345 ~~~~~~~~~v~~~el~~~l 363 (373)
++..+++++++..+
T Consensus 77 -----~~~~~~~~~~~~~~ 90 (91)
T cd00859 77 -----EQETVALDELVEEL 90 (91)
T ss_pred -----CcEEEeHHHHHHHh
Confidence 88899999887665
No 56
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=4.6e-11 Score=118.51 Aligned_cols=330 Identities=18% Similarity=0.216 Sum_probs=191.2
Q ss_pred CeEeeecCCCceEeecCCChH---HHHHHHHHhcCCCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCCch
Q psy17090 1 MYSFIDELNGDNLSLRPEGTA---SVIRSVIENNLIYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPD 74 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~---~iaR~~~~~~~~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~~~ 74 (373)
||++.|+ .++.++|||-.-. ++.|.+.++ +.++|+++|+++++||+| +|..| |.|||+.-+++-+..+...
T Consensus 93 l~~v~dr-g~~~l~L~PTsEe~it~~~~~~i~S--YkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~ 169 (500)
T COG0442 93 LFRVKDR-GDRPLALRPTSEEVITDMFRKWIRS--YKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEED 169 (500)
T ss_pred hEEEEcc-CCceeeeCCCcHHHHHHHHHHHhhh--hhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHH
Confidence 7999999 9999999995543 344433332 346999999999999998 66665 8899999999999988766
Q ss_pred hhHHH---HHHHHHHHHHCCCCceEEEeCCCcChhh--------HH-----H---HHHHHHHHHHhcc-ccccccHHHHH
Q psy17090 75 IDAEL---IIMCSRLWKNLNLKNICLELNSIGNFNE--------RK-----K---YCIDLINYIKKHK-DSKWFCEDIKH 134 (373)
Q Consensus 75 ~d~Ev---i~l~~~~l~~lg~~~~~i~i~~~~~~~~--------~~-----~---~~~~l~~~l~~~~-~~~~l~~~~~~ 134 (373)
++.+. +.+-.++|..+|+. +..+.-+.|..-. +. . ....+-+-+++.. +...-.++...
T Consensus 170 a~~~y~~~~~~Y~~if~~i~l~-~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~ 248 (500)
T COG0442 170 AEETYEKMLDAYSRIFLRLPLI-FGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGE 248 (500)
T ss_pred HHHHHHHHHHHHHHHHHhCCce-EEeecccCCCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCCcccccccc
Confidence 66554 56668899888884 4444444332211 00 0 0000111111110 10000011000
Q ss_pred --Hhhhchh----h------hhcccChhHHHHHhhChh-hHh--------hhh-----HhHHHHHHHHHHHHHhCCCcEE
Q psy17090 135 --SLYLNSL----R------VLDSKNLIIREILINAPK-LLD--------YLE-----KDSLDHFYGIQKILNYNNISYK 188 (373)
Q Consensus 135 --~l~~~~~----~------~l~~~~~~~~~~l~~~~~-l~~--------~~~-----~~~~~~l~~l~~~l~~~g~~i~ 188 (373)
......+ + .+...+.+ ++ .|. +.+ ... ....+.-+.+..-+...++.+.
T Consensus 249 ~~~v~t~s~~~s~r~~~~~i~i~GDn~G---~v--~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~ 323 (500)
T COG0442 249 LEYVHTTSYGISTRIIGAAILIHGDNEG---LV--LPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVE 323 (500)
T ss_pred ceEecccceEEEeeeeeEEEEEecCCCC---cc--CCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEe
Confidence 0000000 0 00000000 00 011 100 000 0112222233333444556677
Q ss_pred Ee-cC-CCCCCCCcc------ceEEEEEeCCCCCccceeccCccchhH-Hhhc---CCC--CCeeeeechHHHHHHHHHh
Q psy17090 189 IN-TK-LVRGMDYYN------RTVFEWTTDKLGSQNSICGGGRYDFLI-KKFS---NKF--VPASGFAIGIERLIELIKK 254 (373)
Q Consensus 189 ~D-~~-~~r~~~YYt------G~vFe~~~~~~g~~~~ia~GGRYD~L~-~~f~---~~~--~pavGfai~le~l~~~l~~ 254 (373)
.| .+ ..+|.-||. |++|++ |=||-.-+ ..+. ++. ...+.++++++|++..+.+
T Consensus 324 ~D~~~~~~~G~kl~~~e~ieVghif~l-------------G~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ie 390 (500)
T COG0442 324 GDDRSPDGPGFKLNIWEGIEVGHIFEL-------------GTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLE 390 (500)
T ss_pred ccccCCCCCCceeeeeeccccCEEEEE-------------CchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHH
Confidence 78 43 333332221 455554 33332110 0011 223 3466788999996555544
Q ss_pred h-----cCCCC-CCCCceEEEEEcCch-h--HHHHHHHHHHHHHcC-CeEEEEeccCccccCHHHHHHHHHHcCCCEEEE
Q psy17090 255 I-----NINHN-FSHQCDIYIVHVGKE-A--ELKAFVLSENLRTLG-LKVILNCVFNNIHESFKSQMKRANASNANFAAI 324 (373)
Q Consensus 255 ~-----~~~~~-~~~~~~v~v~~~~~~-~--~~~~~~la~~Lr~~G-i~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vi 324 (373)
. +..++ ..+|.++.|++.+.. . ...+-++...|..+| ..|.++.++ ++.+-.+..|+..|+|+.++
T Consensus 391 q~~d~~gi~w~~a~apf~~~iv~~n~~~~~~~~~~~~~~~~l~~~G~~e~~~ddr~----er~g~k~~~a~liGiP~~~~ 466 (500)
T COG0442 391 QIHDENGIIWPKAIAPFDVHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDDRD----ERPGVKFADADLIGIPLRIV 466 (500)
T ss_pred HhcccccCccccccCcceeEEEEcCchhHHHHHHhhhHHHHHHhCCchhhhhhhhc----cccCccccCCeEecccceee
Confidence 3 23333 567899999988753 2 223345677788889 888888887 89999999999999999999
Q ss_pred EccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHH
Q psy17090 325 IGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYF 363 (373)
Q Consensus 325 vg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l 363 (373)
+|++ .+.|.+.+|.+.++ +...++..+++..+
T Consensus 467 ~g~~-~~~g~~e~k~r~~g------e~~~~~~~~l~~~~ 498 (500)
T COG0442 467 VGKR-LAEGEVEVKCRKCG------EKEAVTIEALFARL 498 (500)
T ss_pred eccc-ccCCceeEEecCCC------chhhccHHHHHHHh
Confidence 9987 67799999999999 88888888887765
No 57
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.27 E-value=1.8e-11 Score=120.81 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=81.8
Q ss_pred CceEeecCCChHHHHHHHHHhcCC----CC-CCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHH
Q psy17090 10 GDNLSLRPEGTASVIRSVIENNLI----YD-GPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCS 84 (373)
Q Consensus 10 G~~l~LRpD~T~~iaR~~~~~~~~----~~-~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~ 84 (373)
.+.++||+++|++.+|+++++... .. .|.|+|++|+|||++.+..+|.+||+|++..++|... ++++++.++.
T Consensus 325 a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~~~~--s~~~L~~~l~ 402 (494)
T PTZ00326 325 ARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGFVIDRNL--TLGDLIGTIR 402 (494)
T ss_pred hccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEEEEeCCC--CHHHHHHHHH
Confidence 357899999999999999875321 12 4999999999999999999999999999999999876 6789999999
Q ss_pred HHHHHCCCCc--eE-----------------------EEeCCCcChh
Q psy17090 85 RLWKNLNLKN--IC-----------------------LELNSIGNFN 106 (373)
Q Consensus 85 ~~l~~lg~~~--~~-----------------------i~i~~~~~~~ 106 (373)
++++.+|+.+ +. |+|+++|++.
T Consensus 403 ~f~~~lG~~~~RfrP~yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm~r 449 (494)
T PTZ00326 403 EFFRRIGITKLRFKPAFNPYTEPSMEIFGYHPGLKKWVEVGNSGIFR 449 (494)
T ss_pred HHHHhcCCCceEEecCCCCCCCCeeEEEEEecCCCcEEEEeCcCccC
Confidence 9999999855 54 7888888875
No 58
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.26 E-value=7e-12 Score=115.92 Aligned_cols=91 Identities=20% Similarity=0.111 Sum_probs=75.1
Q ss_pred CeEee----ecCCCceEeecCCCh----HHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCC---CCCcceeeeEEEEEc
Q psy17090 1 MYSFI----DELNGDNLSLRPEGT----ASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQY---GRYRQFYQIGVEAIG 69 (373)
Q Consensus 1 m~~f~----D~~~G~~l~LRpD~T----~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~---gr~ref~Q~g~eiig 69 (373)
||++. |. .++.++||||+| ++++|.+..+. ..+|+|+|++|+|||+|.+.. +|.|||+|+++|+||
T Consensus 66 mf~~~~g~~d~-~~~~~~Lrp~~~~~~~~~~~~~~~~~~--~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~ 142 (254)
T cd00774 66 MFKTSIGPVES-GGNLGYLRPETAQGIFVNFKNLLEFNR--RKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFV 142 (254)
T ss_pred HheeeecccCC-CCcccccCCcccchHHHHHHHHHHHhC--CCCCchhhhhchhhccccCcccceeeeccchhhheeeeE
Confidence 56665 56 678899999999 79999887654 268999999999999997654 799999999999999
Q ss_pred CCCch--hhHHHHHHHHHHHHHCCCCc
Q psy17090 70 FPGPD--IDAELIIMCSRLWKNLNLKN 94 (373)
Q Consensus 70 ~~~~~--~d~Evi~l~~~~l~~lg~~~ 94 (373)
.++.. .-..++.+..+++..+|++.
T Consensus 143 ~~~~~~e~~~~v~~~~~~~l~~~G~~~ 169 (254)
T cd00774 143 DPEKSHPWFDYWADQRLKWLPKFAQSP 169 (254)
T ss_pred CCCCchHHHHHHHHHHHHHHHHcCCCc
Confidence 77542 23568899999999999843
No 59
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.20 E-value=4.2e-11 Score=120.67 Aligned_cols=91 Identities=20% Similarity=0.324 Sum_probs=79.7
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
+|.|.|. .++.++|||++|++++|+++++. ..|.|+|++|+|||+++++.++.+||+|+++.++|.+. ..+|++
T Consensus 318 ~y~~~~~-~~~~~~LR~~~T~~~~r~l~~~~---~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~--~f~elk 391 (489)
T PRK04172 318 GYKWDED-IAKRLVLRTHTTALSARYLASRP---EPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDV--SFRDLL 391 (489)
T ss_pred cCCcchh-hhhccccccCChHHHHHHHHhcC---CCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCC--CHHHHH
Confidence 5778888 88999999999999999999754 46999999999999988888888999999999999743 368999
Q ss_pred HHHHHHHHHCCCCceEE
Q psy17090 81 IMCSRLWKNLNLKNICL 97 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i 97 (373)
.++.+++..+|+.++.+
T Consensus 392 g~l~~ll~~lGi~~~~~ 408 (489)
T PRK04172 392 GILKEFYKRLGFEEVKF 408 (489)
T ss_pred HHHHHHHHHhCCceEEE
Confidence 99999999999864444
No 60
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.02 E-value=1.1e-09 Score=106.41 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=72.4
Q ss_pred ceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC
Q psy17090 11 DNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l 90 (373)
+.++|||++|++++|+++.+....+.|.|+|++|+|||++.++.++.+||+|++++++|.+... .|+..++.++|+.|
T Consensus 256 eel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f--~dL~~lleeLL~~L 333 (417)
T PRK09537 256 KNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTR--ENLENIIDDFLKHL 333 (417)
T ss_pred CceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHH--HHHHHHHHHHHHHC
Confidence 4589999999999999876543346799999999999999888889999999999999966544 55779999999999
Q ss_pred CCCceEEE
Q psy17090 91 NLKNICLE 98 (373)
Q Consensus 91 g~~~~~i~ 98 (373)
|++ |.+.
T Consensus 334 GI~-f~i~ 340 (417)
T PRK09537 334 GID-YEII 340 (417)
T ss_pred CCC-cEEe
Confidence 995 7666
No 61
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=98.91 E-value=8e-09 Score=92.25 Aligned_cols=92 Identities=32% Similarity=0.414 Sum_probs=75.1
Q ss_pred eeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCC--CCCcceeeeEEEEEcCCCc--hhhHHH
Q psy17090 4 FIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQY--GRYRQFYQIGVEAIGFPGP--DIDAEL 79 (373)
Q Consensus 4 f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~--gr~ref~Q~g~eiig~~~~--~~d~Ev 79 (373)
+.+. +++..+|||++|+++++.++.+. ...|.|+|++|+|||.+.... .|.+||+|.+++++|.... ....|+
T Consensus 45 ~~~~-~~~~~~LR~s~~~~l~~~~~~n~--~~~~~~lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~ 121 (211)
T cd00768 45 VGAE-NEEDLYLRPTLEPGLVRLFVSHI--RKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEEL 121 (211)
T ss_pred eecC-CCCEEEECCCCcHHHHHHHHhhc--ccCCEEEEEEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHH
Confidence 3455 88999999999999999988764 468999999999999875433 5678999999999997653 256889
Q ss_pred HHHHHHHHHHCCCC-ceEEE
Q psy17090 80 IIMCSRLWKNLNLK-NICLE 98 (373)
Q Consensus 80 i~l~~~~l~~lg~~-~~~i~ 98 (373)
+.++.++++.+|++ ++.+.
T Consensus 122 ~~~~~~~l~~lg~~~~~~~~ 141 (211)
T cd00768 122 IELTEELLRALGIKLDIVFV 141 (211)
T ss_pred HHHHHHHHHHcCCCcceEEE
Confidence 99999999999972 44443
No 62
>KOG2298|consensus
Probab=98.78 E-value=3.9e-08 Score=94.54 Aligned_cols=119 Identities=14% Similarity=0.189 Sum_probs=102.7
Q ss_pred echHHHHHHHHHhhc------------CCCCCCCCceEEEEEcCc--hhHHHHHHHHHHHHHcCCeEEEEeccCccccCH
Q psy17090 242 AIGIERLIELIKKIN------------INHNFSHQCDIYIVHVGK--EAELKAFVLSENLRTLGLKVILNCVFNNIHESF 307 (373)
Q Consensus 242 ai~le~l~~~l~~~~------------~~~~~~~~~~v~v~~~~~--~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl 307 (373)
++|+-||+-.+.++. .+||..+|+++.|.|.++ +.......+.+.|++.|+++.++.+. .|+
T Consensus 463 SfGiGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n~ef~pv~~~ls~~L~~~gis~kvdds~----~SI 538 (599)
T KOG2298|consen 463 SFGIGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPNLEFRPVCQGLSNELTENGISVKVDDSS----SSI 538 (599)
T ss_pred cchhhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCchhHHHHHHHHHHHHHhCCCeEEecCCC----CcH
Confidence 456668888776642 236678899999998874 34566788999999999999999988 899
Q ss_pred HHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHHhh
Q psy17090 308 KSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIKN 370 (373)
Q Consensus 308 ~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~~~ 370 (373)
++.+...++.|+||.|.|+.+.+++++|++|++++. .|..+++++++..+.+.+.-+
T Consensus 539 GrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~------~QvR~~i~e~~s~v~~~~~g~ 595 (599)
T KOG2298|consen 539 GRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDST------MQVRMHISKLKSFLIKYISGA 595 (599)
T ss_pred hhhhhccccccCceEEEEchhhhcCceEEEeecccH------HHHHhhHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999 999999999999998876543
No 63
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.69 E-value=1.3e-08 Score=94.60 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=68.4
Q ss_pred CeEeeecCCCc----eEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCC---CCCCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGD----NLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQ---YGRYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~----~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~---~gr~ref~Q~g~eiig~~~ 72 (373)
||++.|. +++ .++|||+..++++-+++.... ++++|+|+|++|++||+|.++ .+|.|||+|.+++.+-.+.
T Consensus 79 ~f~~~~~-~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~ 157 (261)
T cd00778 79 VAWVTHG-GLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATE 157 (261)
T ss_pred eEEEEec-CCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCH
Confidence 7899887 654 799999955444444433221 235899999999999998665 3589999999998644332
Q ss_pred chhh---HHHHHHHHHHHHHC-CCCceEE
Q psy17090 73 PDID---AELIIMCSRLWKNL-NLKNICL 97 (373)
Q Consensus 73 ~~~d---~Evi~l~~~~l~~l-g~~~~~i 97 (373)
..++ .+++.+..++++.| |++ +.+
T Consensus 158 e~~~~~~~~~~~~~~~i~~~llgl~-~~~ 185 (261)
T cd00778 158 EEAEEEVLQILDLYKEFYEDLLAIP-VVK 185 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCe-EEE
Confidence 2233 44678889999999 997 444
No 64
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=98.34 E-value=1.2e-06 Score=82.89 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=74.1
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCC-----CC--CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQ-----YG--RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~-----~g--r~ref~Q~g~eiig~~~ 72 (373)
||++.| +.++|+|..+++++.++++... +.++|+|+|++|++||+|... .| |.|||.|.+..++..+.
T Consensus 98 ~f~v~~----~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e 173 (297)
T cd00770 98 LYKVEG----EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPE 173 (297)
T ss_pred ccEecC----CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECch
Confidence 566633 5799999999999999875432 336899999999999998542 34 78999999999998764
Q ss_pred c--hhhHHHHHHHHHHHHHCCCCceEEEe
Q psy17090 73 P--DIDAELIIMCSRLWKNLNLKNICLEL 99 (373)
Q Consensus 73 ~--~~d~Evi~l~~~~l~~lg~~~~~i~i 99 (373)
. ..-.+++.++.++++.||++...+..
T Consensus 174 ~~~~~~~~~l~~~~~i~~~lgl~~~~~~~ 202 (297)
T cd00770 174 ESWEELEELISNAEEILQELGLPYRVVNI 202 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEc
Confidence 3 23466899999999999997444444
No 65
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.90 E-value=5.1e-05 Score=75.17 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=72.1
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCCC-----C--CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQY-----G--RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~~-----g--r~ref~Q~g~eiig~~~ 72 (373)
||++.| +.++|+|...+|++-+++..... ..+|+|+|.++++||+|.... | |.|||.+....+|..+.
T Consensus 219 ~y~i~~----~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e 294 (418)
T TIGR00414 219 IFKLED----TDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPE 294 (418)
T ss_pred ceEecC----CCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHH
Confidence 566633 45899999999999887754332 368999999999999986432 3 78999999999998764
Q ss_pred c--hhhHHHHHHHHHHHHHCCCCceEEEe
Q psy17090 73 P--DIDAELIIMCSRLWKNLNLKNICLEL 99 (373)
Q Consensus 73 ~--~~d~Evi~l~~~~l~~lg~~~~~i~i 99 (373)
. ..-.+++.++.++++.||++-..+.+
T Consensus 295 ~s~~~~~~~~~~~~~i~~~Lglp~r~v~~ 323 (418)
T TIGR00414 295 ESAEELEEMTSDAEQILQELELPYRVVNL 323 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 2 12355789999999999997333444
No 66
>KOG4163|consensus
Probab=97.89 E-value=4.9e-05 Score=72.82 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=89.5
Q ss_pred CCCCCCceEEEEEcCc----------hhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 259 HNFSHQCDIYIVHVGK----------EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 259 ~~~~~~~~v~v~~~~~----------~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
||..++.+|.|+|.+- .....+-.+..+|-..|+||+.+++++ .+.+=++.+.+..|+|.-+=+|++
T Consensus 339 PPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDn---ytpGwKfnhwElkGVPlRiEiGPr 415 (551)
T KOG4163|consen 339 PPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDN---YTPGWKFNHWELKGVPLRIEIGPR 415 (551)
T ss_pred CCcccceEEEEEeccccccCchHHHHHHHHHHHHHHHHHhccCceEeeccccc---CCCCccccceeecCceeEEEeccc
Confidence 5667789999999862 234566778899999999999999876 899999999999999999999999
Q ss_pred cccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHHh
Q psy17090 329 EIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIK 369 (373)
Q Consensus 329 e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~~ 369 (373)
++++++|.+-.++++ +...|++++|+..++..|.+
T Consensus 416 D~~~~qv~~VrRd~~------~K~~v~~~~l~~~v~elLe~ 450 (551)
T KOG4163|consen 416 DLASNQVVAVRRDTG------EKKDVSLGDLEKTVKELLEK 450 (551)
T ss_pred hhhhCeEEEEEccCC------cccccCHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999998877654
No 67
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.75 E-value=0.00014 Score=72.22 Aligned_cols=92 Identities=22% Similarity=0.270 Sum_probs=71.6
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCC-----CC--CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQ-----YG--RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~-----~g--r~ref~Q~g~eiig~~~ 72 (373)
||++. ++.++|+|...+|++.+++.... +..+|+|++.++++||+|... .| |.|||++....+|..+.
T Consensus 217 ly~i~----~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e 292 (425)
T PRK05431 217 LYKIE----DDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPE 292 (425)
T ss_pred ceEec----CCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHH
Confidence 56663 45689999999999998875433 236899999999999998643 34 77999999999999874
Q ss_pred ch--hhHHHHHHHHHHHHHCCCCceEE
Q psy17090 73 PD--IDAELIIMCSRLWKNLNLKNICL 97 (373)
Q Consensus 73 ~~--~d~Evi~l~~~~l~~lg~~~~~i 97 (373)
.. .-.+++.++.++++.||++ |.+
T Consensus 293 ~s~~~~~~~l~~~~~i~~~Lglp-yr~ 318 (425)
T PRK05431 293 DSYAELEELTANAEEILQKLELP-YRV 318 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc-EEE
Confidence 21 2245788999999999997 555
No 68
>PRK09350 poxB regulator PoxA; Provisional
Probab=97.59 E-value=4.1e-05 Score=72.74 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=51.6
Q ss_pred CCceEeec--CCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHH
Q psy17090 9 NGDNLSLR--PEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRL 86 (373)
Q Consensus 9 ~G~~l~LR--pD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~ 86 (373)
.|+.+.|| |++| +.|.+++. .-|+||+|+|||.+.+..++..||+|+.++..+.+- .+++.++-++
T Consensus 56 ~~~~~~L~~SPe~~--~kr~la~~------~~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~----~dlm~~~E~l 123 (306)
T PRK09350 56 QGKTLWLMTSPEYH--MKRLLAAG------SGPIFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDM----YRLMNEVDDL 123 (306)
T ss_pred CCcceEEecCHHHH--HHHHhhcc------ccceEEecceeecCCCCCCCCcHHHhhhhhhhCCCH----HHHHHHHHHH
Confidence 68899999 9999 66776643 229999999999998877889999999999888632 3444444444
Q ss_pred HH
Q psy17090 87 WK 88 (373)
Q Consensus 87 l~ 88 (373)
+.
T Consensus 124 i~ 125 (306)
T PRK09350 124 LQ 125 (306)
T ss_pred HH
Confidence 43
No 69
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=97.26 E-value=0.0022 Score=57.98 Aligned_cols=74 Identities=22% Similarity=0.197 Sum_probs=58.7
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHCC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLN 91 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~lg 91 (373)
.-+||+.+++++.+.++.| ..+.|+|++|+|||.+.....+..|+++.++.+.|... ...++..++..+++.+|
T Consensus 59 ~~~LR~sLlp~LL~~l~~N----~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~--df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 59 RLLLRTHTSAVQARALAKL----KPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGL--TFADLKGTLEEFAKELF 132 (218)
T ss_pred eEEEeccCcHHHHHHHHhc----CCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCC--CHHHHHHHHHHHHHHhc
Confidence 4689999999999998876 36999999999999764332333499999999999532 35677778888888887
No 70
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=97.26 E-value=0.00056 Score=68.89 Aligned_cols=89 Identities=20% Similarity=0.214 Sum_probs=67.0
Q ss_pred CceEeecCCChHHHHHHHHHhcCC-CCCCeeEEE-eeceeecCCCC-CC--CCcceeeeEEEEEcCCCch-h-hHHHHHH
Q psy17090 10 GDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWY-SGPMFRHERPQ-YG--RYRQFYQIGVEAIGFPGPD-I-DAELIIM 82 (373)
Q Consensus 10 G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y-~g~vfR~~~~~-~g--r~ref~Q~g~eiig~~~~~-~-d~Evi~l 82 (373)
...++|||..++++.-+++..... .++|+|++. .|+|||+|... .| |.+||.|..+.++|.+... . -.+++..
T Consensus 307 ~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~ 386 (517)
T PRK00960 307 DPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKY 386 (517)
T ss_pred cccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHH
Confidence 567899999999998877743332 357999998 78999998422 23 8899999999999987532 1 2446778
Q ss_pred HHHHHHHCCCCceEEE
Q psy17090 83 CSRLWKNLNLKNICLE 98 (373)
Q Consensus 83 ~~~~l~~lg~~~~~i~ 98 (373)
+.++++.||++-+.+.
T Consensus 387 ~e~i~~~LgLp~~r~v 402 (517)
T PRK00960 387 AHILAEKLDLEYWREV 402 (517)
T ss_pred HHHHHHHcCCCceEEe
Confidence 8889999999734443
No 71
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=97.21 E-value=0.0007 Score=63.14 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=42.9
Q ss_pred CCceEeec--CCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcC
Q psy17090 9 NGDNLSLR--PEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70 (373)
Q Consensus 9 ~G~~l~LR--pD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~ 70 (373)
.|+.+.|+ |+++ ..|.++.+ . -|+|++|+|||++.++.+|.+||+|+++|....
T Consensus 47 ~g~~~~L~~Spql~--~~~~~~~~-~-----~~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~ 102 (269)
T cd00669 47 LGLDYYLRISPQLF--KKRLMVGG-L-----DRVFEINRNFRNEDLRARHQPEFTMMDLEMAFA 102 (269)
T ss_pred CCCcEEeecCHHHH--HHHHHhcC-C-----CcEEEEecceeCCCCCCCcccceeEEEEEEecC
Confidence 37888888 7877 34555432 1 299999999999977788999999999998875
No 72
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=97.12 E-value=0.0025 Score=58.58 Aligned_cols=84 Identities=15% Similarity=0.218 Sum_probs=64.5
Q ss_pred CceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHH
Q psy17090 10 GDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKN 89 (373)
Q Consensus 10 G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~ 89 (373)
.+-.+||.-.|+..+|.+..+ .+.|.|++++|+|||++.....+..+|+|.+.=+++... .-.++..++.++++.
T Consensus 78 ~~~~vLRThts~~~~~~l~~~---~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~--~f~~Lk~~l~~l~~~ 152 (247)
T PF01409_consen 78 EDYSVLRTHTSPGQLRTLNKH---RPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNV--TFEDLKGTLEELLKE 152 (247)
T ss_dssp CSSEEE-SSTHHHHHHHHTTT---SHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE---HHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhHHHHHHHHHh---cCCCeEEEecCceEecCCcccccCccceeEeeEEEeccc--chhHHHHHHHHHHHH
Confidence 467899999999999998222 257999999999999887666677899999998888642 225677888888888
Q ss_pred C-CCCceEEEe
Q psy17090 90 L-NLKNICLEL 99 (373)
Q Consensus 90 l-g~~~~~i~i 99 (373)
+ |.+ +.+++
T Consensus 153 lfG~~-~~~r~ 162 (247)
T PF01409_consen 153 LFGID-VKVRF 162 (247)
T ss_dssp HHTTT-EEEEE
T ss_pred Hhhcc-cceEe
Confidence 8 876 44443
No 73
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.02 E-value=0.0036 Score=62.36 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=67.5
Q ss_pred ceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC
Q psy17090 11 DNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l 90 (373)
+.++||.-.|.--+|++.........|.|++.+|.|||++....-+.-||+|+..=+++..- .-..++.++.++++.+
T Consensus 316 ~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~--t~~~L~g~l~~f~~~l 393 (492)
T PLN02853 316 NKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGL--TLGDLIGVLEDFFSRL 393 (492)
T ss_pred cccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCCC--CHHHHHHHHHHHHHHc
Confidence 57899999999999998853322236999999999999987777788999999988887652 2356888999999998
Q ss_pred CCCceEE
Q psy17090 91 NLKNICL 97 (373)
Q Consensus 91 g~~~~~i 97 (373)
|...+.+
T Consensus 394 g~~~~Rf 400 (492)
T PLN02853 394 GMTKLRF 400 (492)
T ss_pred CCceEEE
Confidence 7643443
No 74
>PLN02320 seryl-tRNA synthetase
Probab=97.02 E-value=0.0013 Score=65.99 Aligned_cols=93 Identities=23% Similarity=0.254 Sum_probs=65.6
Q ss_pred CCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCCCC-------CCcceeeeEEEEEcCCCch--hhHH
Q psy17090 9 NGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQYG-------RYRQFYQIGVEAIGFPGPD--IDAE 78 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~~g-------r~ref~Q~g~eiig~~~~~--~d~E 78 (373)
+++.++|-|-.-.|++-++..... +.++|+|++.+|++||+|....| |.++|.|....+|..+... .-.+
T Consensus 284 e~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ 363 (502)
T PLN02320 284 DGSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEE 363 (502)
T ss_pred CCCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHH
Confidence 456678855444444333322221 23689999999999999976434 7789999999999986432 2355
Q ss_pred HHHHHHHHHHHCCCCceEEEeCC
Q psy17090 79 LIIMCSRLWKNLNLKNICLELNS 101 (373)
Q Consensus 79 vi~l~~~~l~~lg~~~~~i~i~~ 101 (373)
++.++.++++.||++...+.+..
T Consensus 364 ll~~~e~i~~~LgLpyrvv~l~t 386 (502)
T PLN02320 364 LIQIEEDLFTSLGLHFKTLDMAT 386 (502)
T ss_pred HHHHHHHHHHHcCCCeEEEEecC
Confidence 78999999999999755565543
No 75
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=97.00 E-value=0.0042 Score=61.13 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=65.4
Q ss_pred ceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCC-CCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHH
Q psy17090 11 DNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHER-PQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKN 89 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~-~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~ 89 (373)
..+.||.-+|+...|.+..-....+.|.|+|.+|.|||++. ...-+..+|+|+..=++|..-. -.++..++..+++.
T Consensus 181 ~~~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVS--f~DLKgvLe~LLr~ 258 (533)
T TIGR00470 181 TTLTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVS--VDDGKAVAEGLLAQ 258 (533)
T ss_pred hCcccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCC--HHHHHHHHHHHHHH
Confidence 35689999999888876631112257999999999999884 3446789999999999997642 36788888889999
Q ss_pred CCCCceEEE
Q psy17090 90 LNLKNICLE 98 (373)
Q Consensus 90 lg~~~~~i~ 98 (373)
||...+.++
T Consensus 259 LG~~~vRFR 267 (533)
T TIGR00470 259 FGFTKFRFR 267 (533)
T ss_pred hCCceEEec
Confidence 987545444
No 76
>PLN02678 seryl-tRNA synthetase
Probab=96.87 E-value=0.0041 Score=61.86 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=62.3
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCCCC-------CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQYG-------RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~~g-------r~ref~Q~g~eiig~~~ 72 (373)
||++.+. +...+.++ -.-+|++=+++.... +.++|+|++.++++||+|....| |.++|+|...=.|..+.
T Consensus 220 my~i~~~-~~~~yLi~-TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe 297 (448)
T PLN02678 220 LYKVTGE-GDDKYLIA-TSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPN 297 (448)
T ss_pred CceecCC-CCceeeec-ccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCC
Confidence 6777443 33444444 222333333332222 33689999999999999976433 56899999887775543
Q ss_pred c----hhhHHHHHHHHHHHHHCCCCceEEEe
Q psy17090 73 P----DIDAELIIMCSRLWKNLNLKNICLEL 99 (373)
Q Consensus 73 ~----~~d~Evi~l~~~~l~~lg~~~~~i~i 99 (373)
. ..--|++..+.++++.||+. |.+..
T Consensus 298 ~~~s~~~~e~~l~~~~~i~~~L~lp-yrvv~ 327 (448)
T PLN02678 298 GNESWEMHEEMLKNSEDFYQSLGIP-YQVVS 327 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCC-eEEEe
Confidence 2 23356889999999999997 66643
No 77
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=96.87 E-value=0.0056 Score=57.88 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=58.6
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHCC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLN 91 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~lg 91 (373)
..+||+-+++..+|.++.|.. .|+|+|.+|+|||.+.....+..||+|+++-+.+.. ..-.++..++..++..++
T Consensus 128 ~~vLRtsl~p~ll~~l~~N~~---~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~--~~f~dLKg~le~ll~~l~ 202 (294)
T TIGR00468 128 RLLLRTHTTAVQLRTMEENEK---PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKN--VSFTNLKGFLEEFLKKMF 202 (294)
T ss_pred CcceecccHHHHHHHHHhcCC---CCceEEEecceEEcCCCCCccCChhhEEEEEEECCC--CCHHHHHHHHHHHHHHhC
Confidence 468999999999999886542 699999999999976533233349999998888732 124677777888888888
Q ss_pred CC
Q psy17090 92 LK 93 (373)
Q Consensus 92 ~~ 93 (373)
++
T Consensus 203 ~~ 204 (294)
T TIGR00468 203 GE 204 (294)
T ss_pred CC
Confidence 75
No 78
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=96.70 E-value=0.0025 Score=59.74 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=31.0
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+||+|+|||+++++.+|..||+|+++|+.+.+
T Consensus 70 ~~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~~ 103 (280)
T cd00777 70 DRYFQIARCFRDEDLRADRQPEFTQIDIEMSFVD 103 (280)
T ss_pred CcEEEeccceeCCCCCCCccceeEEeEeeeccCC
Confidence 3999999999999988888899999999999864
No 79
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=96.07 E-value=0.048 Score=52.18 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=63.7
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC-
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL- 90 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l- 90 (373)
..+||.-.|+..+|.+..+ ..|+|++.+|.|||++....-+..+|+|...=+++..- .-+++..++..+++.+
T Consensus 164 ~~lLRThTSp~qir~L~~~----~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~v--tf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 164 GLLLRTHTSPVQIRTMEKQ----KPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNI--SFADLKGTLEDFLKAFF 237 (339)
T ss_pred CceeeccCcHHHHHHHHhc----CCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCC--CHHHHHHHHHHHHHHHc
Confidence 3689999999999988752 46999999999999876556678899999999998753 2367777777777777
Q ss_pred CCCceEEEeC
Q psy17090 91 NLKNICLELN 100 (373)
Q Consensus 91 g~~~~~i~i~ 100 (373)
| ++..+++-
T Consensus 238 g-~~~~~R~r 246 (339)
T PRK00488 238 G-EDVKIRFR 246 (339)
T ss_pred C-CCCeEEec
Confidence 4 34555543
No 80
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=95.86 E-value=0.049 Score=54.62 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=67.1
Q ss_pred ceEeecCCChHHHHHHHHHhcCC-CCCCeeEEE-eeceeecCCC-CCC--CCcceeeeEEEEEcCCCc--hhhHHHHHHH
Q psy17090 11 DNLSLRPEGTASVIRSVIENNLI-YDGPKRLWY-SGPMFRHERP-QYG--RYRQFYQIGVEAIGFPGP--DIDAELIIMC 83 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y-~g~vfR~~~~-~~g--r~ref~Q~g~eiig~~~~--~~d~Evi~l~ 83 (373)
..++|+|-.++|+.-+++..... .++|+|++. .++|||+|.. ..| |.+||.+.-...+|.+.. ..--+.+..+
T Consensus 308 ~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~ 387 (520)
T TIGR00415 308 PGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELA 387 (520)
T ss_pred CceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHH
Confidence 37899999999999887743322 357999998 6689999863 233 778999887777776532 1224467888
Q ss_pred HHHHHHCCCCceEEEeCC
Q psy17090 84 SRLWKNLNLKNICLELNS 101 (373)
Q Consensus 84 ~~~l~~lg~~~~~i~i~~ 101 (373)
.++++.|+++ +.+..++
T Consensus 388 ~~~l~~L~Lp-yrv~~ad 404 (520)
T TIGR00415 388 EDAADELDLE-WWTEVGD 404 (520)
T ss_pred HHHHHHcCCC-eEEeecC
Confidence 9999999996 7777555
No 81
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=94.79 E-value=0.21 Score=47.69 Aligned_cols=76 Identities=20% Similarity=0.164 Sum_probs=61.3
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHCC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLN 91 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~lg 91 (373)
.+.||-..|+--||.+..+.. .|+|++..|.|||++....-+.-+|+|+..=+++..- .-+.+..++.++++.++
T Consensus 170 ~~lLRTHTs~vq~R~l~~~~~---~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~--s~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 170 KLLLRTHTSPVQARTLAENAK---IPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNI--SFADLKGTLEEFAKKFF 244 (335)
T ss_pred ceeecccCcHhhHHHHHhCCC---CCceEecccceecCCCCCcccchheeeeEEEEEeCCc--cHHHHHHHHHHHHHHhc
Confidence 679999999999999887542 3999999999999986666778899999986666442 23678888888888886
Q ss_pred C
Q psy17090 92 L 92 (373)
Q Consensus 92 ~ 92 (373)
-
T Consensus 245 g 245 (335)
T COG0016 245 G 245 (335)
T ss_pred C
Confidence 4
No 82
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.33 E-value=0.24 Score=51.11 Aligned_cols=88 Identities=11% Similarity=0.153 Sum_probs=63.8
Q ss_pred EeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHH
Q psy17090 3 SFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIM 82 (373)
Q Consensus 3 ~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l 82 (373)
++.++.+.+.-.||+-+++++.+.++.|. .+..++|+|.+|.||+.+......++|+.+.++=+.|... .=.++-.+
T Consensus 405 ~l~NPls~e~svLRtsLlpgLL~~~~~N~-~~~~~~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~--df~dlKg~ 481 (552)
T PRK09616 405 EVLNPISEDYTVVRTSLLPSLLEFLSNNK-HREYPQKIFEIGDVVLIDESTETGTRTERKLAAAIAHSEA--SFTEIKSV 481 (552)
T ss_pred EEcCCCccchheEeccchHHHHHHHHhcc-CCCCCeeEEEeeEEEecCCccccCcchhhEEEEEEECCCC--CHHHHHHH
Confidence 44555567778999999999999988765 5567999999999998643212245799999998998521 12445556
Q ss_pred HHHHHHHCCCC
Q psy17090 83 CSRLWKNLNLK 93 (373)
Q Consensus 83 ~~~~l~~lg~~ 93 (373)
+-.++..+|++
T Consensus 482 ve~ll~~lgi~ 492 (552)
T PRK09616 482 VQALLRELGIE 492 (552)
T ss_pred HHHHHHHcCCe
Confidence 66666777763
No 83
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=94.12 E-value=0.059 Score=51.64 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=28.6
Q ss_pred eEEEeeceeecCCCCCC-CCcceeeeEEEEEcCCC
Q psy17090 39 RLWYSGPMFRHERPQYG-RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 39 k~~y~g~vfR~~~~~~g-r~ref~Q~g~eiig~~~ 72 (373)
|+|++|+|||.+.+... +..||+|+++|..+.++
T Consensus 91 ~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~ 125 (322)
T cd00776 91 RVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIED 125 (322)
T ss_pred hhEEeccccccCCCCcCCCcceeeccceeeeccCC
Confidence 89999999999875543 56899999999998744
No 84
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=93.30 E-value=0.12 Score=53.27 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=30.3
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||.|.....|.-||+|+++|.-..+
T Consensus 207 ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d 240 (583)
T TIGR00459 207 DRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMT 240 (583)
T ss_pred CcEEEEcceeeCCCCCCCCCcccCcceeeecCCC
Confidence 3999999999999887778889999999998864
No 85
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=93.02 E-value=0.13 Score=53.33 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=29.1
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||.|.....|.-||+|+++|.-+.+
T Consensus 210 ~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~ 243 (588)
T PRK00476 210 DRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVT 243 (588)
T ss_pred CceEEEeceeecCCCCCCcCcccccceeeecCCC
Confidence 3999999999998766666559999999998875
No 86
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=92.61 E-value=0.23 Score=47.80 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=36.0
Q ss_pred CceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCC-CCcceeeeEEEEEcCCC
Q psy17090 10 GDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYG-RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 10 G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~g-r~ref~Q~g~eiig~~~ 72 (373)
|+.+-|+.-.-...=++++. . --|+|++|++||.+..... +.-||+|+.+|.-+.+.
T Consensus 72 ~~~~~L~~Spql~~k~ll~~-g-----~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~ 129 (335)
T PF00152_consen 72 GEPAYLTQSPQLYLKRLLAA-G-----LERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADY 129 (335)
T ss_dssp TEEEEE-SSSHHHHHHHHHT-T-----HSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSH
T ss_pred ccceecCcChHHHHhhhccc-c-----chhhhheecceeccCcccccchhhhhhhhhccccCcH
Confidence 34444554443433344442 2 2399999999999876333 45699999999988654
No 87
>PLN02903 aminoacyl-tRNA ligase
Probab=92.53 E-value=0.18 Score=52.56 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=29.9
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||+|.....|.-||+|+++|.-..+
T Consensus 273 ~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d 306 (652)
T PLN02903 273 DRYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 306 (652)
T ss_pred CcEEEEehhhccCCCCCCcccceeeeeeeecCCC
Confidence 4999999999999877677789999999988765
No 88
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=92.34 E-value=0.25 Score=47.49 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=28.4
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||.+....-+.-||+|+++|..+.+
T Consensus 77 ~~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~~~ 110 (329)
T cd00775 77 ERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYAD 110 (329)
T ss_pred CcEEEEeccccCCCCCCCCCCceEEEEEeeecCC
Confidence 4999999999998765555679999999988753
No 89
>KOG2784|consensus
Probab=91.90 E-value=0.12 Score=49.21 Aligned_cols=83 Identities=18% Similarity=0.119 Sum_probs=63.2
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHCC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLN 91 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~lg 91 (373)
-..||--.|.--||++.+--...-.|.|+|.|.+|||+|....-+.-||+|.---|.+..- .-..+|-++.+++..+|
T Consensus 308 KnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gl--tLgdLig~l~~ff~~lg 385 (483)
T KOG2784|consen 308 KNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGL--TLGDLIGILMEFFTKLG 385 (483)
T ss_pred HHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCC--cHHHHHHHHHHHHhccC
Confidence 4578888888888886543323347999999999999987777788899998766655442 33678999999999999
Q ss_pred CCceE
Q psy17090 92 LKNIC 96 (373)
Q Consensus 92 ~~~~~ 96 (373)
.++..
T Consensus 386 ~tnlr 390 (483)
T KOG2784|consen 386 ATNLR 390 (483)
T ss_pred Ccccc
Confidence 86543
No 90
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.79 E-value=0.93 Score=44.81 Aligned_cols=92 Identities=24% Similarity=0.292 Sum_probs=63.3
Q ss_pred eEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCCCCC-----Cc--ceeeeEEEEEcCCCc---hh-hHHH
Q psy17090 12 NLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQYGR-----YR--QFYQIGVEAIGFPGP---DI-DAEL 79 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~~gr-----~r--ef~Q~g~eiig~~~~---~~-d~Ev 79 (373)
.+.|=|-...|++-+++..-.. ..+|+|++-.+++||.|....|+ .| ||.- +|.|-...+ .. --|+
T Consensus 227 ~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~K--VE~v~~~~Pe~S~~~~E~m 304 (429)
T COG0172 227 DLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDK--VELVVITKPEESEEELEEM 304 (429)
T ss_pred CEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeee--EEEEEEeCcchhHHHHHHH
Confidence 6889999999999988755444 24799999999999998665443 33 4444 555544332 22 2457
Q ss_pred HHHHHHHHHHCCCCceEEEe--CCCcCh
Q psy17090 80 IIMCSRLWKNLNLKNICLEL--NSIGNF 105 (373)
Q Consensus 80 i~l~~~~l~~lg~~~~~i~i--~~~~~~ 105 (373)
+..+-++++.|+++-..+.+ |+.|+.
T Consensus 305 ~~~ae~il~~LeLPyRvv~lctGDlgf~ 332 (429)
T COG0172 305 LGNAEEVLQELELPYRVVNLCTGDLGFS 332 (429)
T ss_pred HHHHHHHHHHhCCCceEeeeccCCcCCc
Confidence 89999999999997433333 455543
No 91
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.29 E-value=0.55 Score=47.45 Aligned_cols=103 Identities=10% Similarity=0.011 Sum_probs=79.8
Q ss_pred CCCCCCceEEEEEcCc--h-----hHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCccc
Q psy17090 259 HNFSHQCDIYIVHVGK--E-----AELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEII 331 (373)
Q Consensus 259 ~~~~~~~~v~v~~~~~--~-----~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~ 331 (373)
|+..++.+|.+++... + ....+..++..|...+++++.+..++ ...+.++..++-.|+++++-+|.+..+
T Consensus 280 Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~---~~~G~kl~~~e~ieVghif~lG~kyse 356 (500)
T COG0442 280 PPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSP---DGPGFKLNIWEGIEVGHIFELGTKYSE 356 (500)
T ss_pred CchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCC---CCCCceeeeeeccccCEEEEECchhhh
Confidence 5556778888776531 1 34456677777888899999984421 688888999999999999999999999
Q ss_pred CCeEEEEECCCCCCCCCcc--ceeecHHHHHHHHHHHHHhh
Q psy17090 332 NNTLIIKDLRNKYEDPTLK--QISISFKDAENYFYKKIIKN 370 (373)
Q Consensus 332 ~~~v~Vk~l~~~~~~~~~~--~~~v~~~el~~~l~~~~~~~ 370 (373)
+.+++|.+.+++ + ...++....+.-+...+..|
T Consensus 357 ~~~a~v~~r~g~------~~~~~mg~ygigvsr~v~a~ieq 391 (500)
T COG0442 357 AMNATVLDRDGK------EQPKTMGCYGIGVSRLVAALLEQ 391 (500)
T ss_pred hCeeEEEecCCC------ccceEEEehhhhhhhHHHHHHHH
Confidence 999999999998 7 67788888888844444333
No 92
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=90.79 E-value=0.95 Score=45.65 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=54.6
Q ss_pred CCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEc---CCCchhh-HHHHHHHH
Q psy17090 9 NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIG---FPGPDID-AELIIMCS 84 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig---~~~~~~d-~Evi~l~~ 84 (373)
....-+||+-+|+++...++.|...+..|+|+|.+|+|||.+.. . |..-.+.-+-| ..+...| .++-.++.
T Consensus 180 ~~~~svLRtSLlPGLL~tLs~Nl~Rg~~piRLFEIGRVFr~d~~--e---E~t~La~llsGs~W~~~e~vDFfDlKGiLE 254 (529)
T PRK06253 180 ESSRLTLRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQR--E---DASRLMTYHSASCVIADEDVTVDDGKAVAE 254 (529)
T ss_pred ccccCccccchHHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCc--c---chhheeEEEEccccccCCCCCHHHHHHHHH
Confidence 44566899999999999887765455789999999999986421 1 22222222222 1122223 45667777
Q ss_pred HHHHHCCCCceEEE
Q psy17090 85 RLWKNLNLKNICLE 98 (373)
Q Consensus 85 ~~l~~lg~~~~~i~ 98 (373)
.+|..+|++++.+.
T Consensus 255 ~LL~~LGI~~i~f~ 268 (529)
T PRK06253 255 GLLSQFGFTKFKFR 268 (529)
T ss_pred HHHHHcCCCeEEEe
Confidence 78888888644443
No 93
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=90.31 E-value=0.82 Score=40.41 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=58.5
Q ss_pred EeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCC--------ch
Q psy17090 3 SFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPG--------PD 74 (373)
Q Consensus 3 ~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~--------~~ 74 (373)
++.++++...=+||+-+.+++.+.++.|......++|+|.+|+||.... . .++|..-.++=+-|... ..
T Consensus 44 ~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lFEiG~vf~~~~-~--~~~e~~~l~~~~~g~~~~~~w~~~~~~ 120 (198)
T cd00769 44 ELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLFEIGRVFLKDE-D--GPEEEEHLAALLSGNREPESWQGKGRP 120 (198)
T ss_pred EEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEEEeEeEEecCC-C--CCcchheEEEEEECCCccccccCCCCc
Confidence 3445555566679999999999998877654458999999999997532 1 34577777777777531 11
Q ss_pred hhH-HHHHHHHHHHHHCCC
Q psy17090 75 IDA-ELIIMCSRLWKNLNL 92 (373)
Q Consensus 75 ~d~-Evi~l~~~~l~~lg~ 92 (373)
.|. ++-.++..+++.+|+
T Consensus 121 ~~f~~~Kg~ve~ll~~l~~ 139 (198)
T cd00769 121 VDFYDAKGILEALLRALGI 139 (198)
T ss_pred cCHhhHHHHHHHHHHHcCC
Confidence 243 344555566677776
No 94
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.26 E-value=0.23 Score=49.95 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=38.3
Q ss_pred CCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEE
Q psy17090 9 NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAI 68 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eii 68 (373)
.|+-++|+- .+|+-..+..- ..-=|+|+|.+|||+|....-|.-||+|.|+|.=
T Consensus 187 ~G~FYALPQ--SPQlfKQLLMv----sGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmS 240 (585)
T COG0173 187 PGKFYALPQ--SPQLFKQLLMV----AGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMS 240 (585)
T ss_pred CCceeecCC--CHHHHHHHHHH----hcccceeeeeeeecccccccccCCcceeEeEEee
Confidence 466677763 34444433321 1234999999999999888888889999999974
No 95
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=89.90 E-value=0.43 Score=47.74 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=28.0
Q ss_pred eeEEEeeceeecCCCCCCC-CcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGR-YRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr-~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||.|.....| .-||+|+.+|..+.+
T Consensus 203 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 237 (437)
T PRK05159 203 ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFID 237 (437)
T ss_pred CcEEEEeceeeCCCCCCcccchhhheeeeeeeecc
Confidence 3999999999998765443 469999999988765
No 96
>PRK06462 asparagine synthetase A; Reviewed
Probab=89.75 E-value=0.37 Score=46.44 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=27.8
Q ss_pred eeEEEeeceeecCCCCC---CCCcceeeeEEEEEcC
Q psy17090 38 KRLWYSGPMFRHERPQY---GRYRQFYQIGVEAIGF 70 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~---gr~ref~Q~g~eiig~ 70 (373)
-|+|++|++||.|.... -+.-||+++.+|..+.
T Consensus 103 ~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~ 138 (335)
T PRK06462 103 GKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGA 138 (335)
T ss_pred CcEEEEeccccCCCCCCCCCCCCCchheeeehhhcC
Confidence 39999999999987655 4567999999998874
No 97
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=89.14 E-value=0.56 Score=46.80 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=28.0
Q ss_pred eeEEEeeceeecCCCCCC-CCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYG-RYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~g-r~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||.|..... +.-||+|+.+|..+.+
T Consensus 200 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 234 (428)
T TIGR00458 200 ERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFED 234 (428)
T ss_pred CcEEEEecccccCCCCCccchheeeEeeeeeccCC
Confidence 499999999999876543 4469999999988764
No 98
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=88.96 E-value=0.77 Score=46.63 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=28.5
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||.|....-+.-||+|+.+|....+
T Consensus 241 ~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~d 274 (491)
T PRK00484 241 ERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYAD 274 (491)
T ss_pred CcEEEEecceecCCCCCCcCCceEEEEEEEecCC
Confidence 4999999999998766556679999999988753
No 99
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=88.91 E-value=0.44 Score=50.16 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=29.5
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||.|.....|.-||+|+++|.-+.+
T Consensus 225 ~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af~d 258 (706)
T PRK12820 225 ERYFQLARCFRDEDLRPNRQPEFTQLDIEASFID 258 (706)
T ss_pred CcEEEEechhcCCCCCCCcCccccccceeeccCC
Confidence 4999999999998776667789999999988864
No 100
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=88.64 E-value=0.51 Score=47.43 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=33.2
Q ss_pred eeEEEeeceeecCCCCCC-CCcceeeeEEEEEcCCCchhhHHHHHHHHHHHH
Q psy17090 38 KRLWYSGPMFRHERPQYG-RYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWK 88 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~g-r~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~ 88 (373)
-|+|++|++||.|..... +.-||+|+++|..+.+- .|++.++-+.+.
T Consensus 208 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~----~~~m~~~e~li~ 255 (450)
T PRK03932 208 GKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADL----EDNMDLAEEMLK 255 (450)
T ss_pred CCeEEeeeccccCCCCCccccccccccceEEeccCH----HHHHHHHHHHHH
Confidence 399999999999875333 34699999999887542 345555544444
No 101
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=87.67 E-value=0.57 Score=47.06 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=27.7
Q ss_pred eeEEEeeceeecCCCCCC-CCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYG-RYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~g-r~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||.|..... +.-||+|+++|.-+.+
T Consensus 211 ~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~ 245 (453)
T TIGR00457 211 SKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFAN 245 (453)
T ss_pred cCceEeeeccccCCCCCCcCcchhccceeeeecCC
Confidence 399999999999876533 4469999999988764
No 102
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=86.22 E-value=1.2 Score=45.92 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=27.5
Q ss_pred eeEEEeeceeecCCCCCCC-CcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGR-YRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr-~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||.|.....| .-||||.++|+-..+
T Consensus 344 ~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d 378 (586)
T PTZ00425 344 GDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFAD 378 (586)
T ss_pred CCEEEEeceEeCCCCCCCCCCcccceEEEEEecCC
Confidence 3999999999998765444 479999999987653
No 103
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=86.11 E-value=1.1 Score=45.76 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=28.6
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||+|....-+.-||+|+.+|.-..+
T Consensus 253 ~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 286 (505)
T PRK12445 253 ERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD 286 (505)
T ss_pred CcEEEEehhccCCCCCCCcCcccceeeeeeecCC
Confidence 3999999999998765456679999999998764
No 104
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=84.72 E-value=1.3 Score=46.23 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=28.4
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||+|....-+.-||+|+.+|..+.+
T Consensus 302 erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 335 (659)
T PTZ00385 302 ERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYHT 335 (659)
T ss_pred CCEEEEeceecCCCCCCCccccccceeeeeecCC
Confidence 4999999999998766556679999999977753
No 105
>PLN02788 phenylalanine-tRNA synthetase
Probab=84.30 E-value=7 Score=38.54 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=43.7
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~ 70 (373)
..+||.-.|.--+|++.++ .| |++..|.|||++....-+.-+|+|+..=.+..
T Consensus 128 ~~lLRTHTSa~q~~~l~~~-----~~-~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~ 180 (402)
T PLN02788 128 QTVLRCHTSAHQAELLRAG-----HT-HFLVTGDVYRRDSIDATHYPVFHQMEGVRVFS 180 (402)
T ss_pred CccccCCCcHHHHHHHHhC-----CC-cEEEEeeEeecCCCCcccCccceeEEEEEEec
Confidence 3689999999999987642 23 99999999999876777888999998877763
No 106
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=83.96 E-value=0.35 Score=45.96 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=27.1
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~ 70 (373)
-|+|.+|+|||.|....-+.-||+++.++..+.
T Consensus 74 ~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~~~ 106 (304)
T TIGR00462 74 GPIFQICKVFRNGERGRRHNPEFTMLEWYRPGF 106 (304)
T ss_pred CCEEEEcCceeCCCCCCCcccHHHhHHHHHHcC
Confidence 399999999999876544567999999987664
No 107
>PLN02850 aspartate-tRNA ligase
Probab=83.04 E-value=0.83 Score=46.80 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=24.9
Q ss_pred eEEEeeceeecCCCCCC-CCcceeeeEEEE-Ec
Q psy17090 39 RLWYSGPMFRHERPQYG-RYRQFYQIGVEA-IG 69 (373)
Q Consensus 39 k~~y~g~vfR~~~~~~g-r~ref~Q~g~ei-ig 69 (373)
|+|++|+|||.|..... +.-||+|.++|+ |+
T Consensus 293 rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~ 325 (530)
T PLN02850 293 RVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIK 325 (530)
T ss_pred ceEEEecccccCCCCCCccchhhccchhhhhhh
Confidence 99999999999875333 346999999994 55
No 108
>KOG2411|consensus
Probab=82.92 E-value=0.44 Score=47.26 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=28.4
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~ 70 (373)
=|+|+++++||+|....-|.-||+|.++|+-=.
T Consensus 248 drYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~ 280 (628)
T KOG2411|consen 248 DRYYQIARCFRDEDLRADRQPEFTQVDMEMSFT 280 (628)
T ss_pred hhHHhHHhhhcccccCcccCCcceeeeeEEecc
Confidence 389999999999977777888999999998543
No 109
>PLN02502 lysyl-tRNA synthetase
Probab=82.05 E-value=1.3 Score=45.56 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=28.3
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||+|....-+.-||||+.+|.-..+
T Consensus 298 ~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~d 331 (553)
T PLN02502 298 ERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYAD 331 (553)
T ss_pred CCEEEEcCeeeCCCCCCccccceeehhhhhhcCC
Confidence 3999999999998766555679999999988753
No 110
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=81.75 E-value=2.1 Score=44.29 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=27.7
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~ 70 (373)
-|+|.+|++||+|....-+.-||||+.++.-+.
T Consensus 322 ~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~ 354 (585)
T PTZ00417 322 DKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYA 354 (585)
T ss_pred CCEEEEcccccCCCCCCCccceeeeeeeeeecC
Confidence 399999999999876555566999999998774
No 111
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=81.27 E-value=0.97 Score=43.45 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=54.3
Q ss_pred ceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCC-CCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHH
Q psy17090 11 DNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQ-YGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKN 89 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~-~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~ 89 (373)
.-+.||.-||...--.+..-....+.|+|+|.|..+||+++.. ..+.--++-+..-+++.+-.-.+.- .++--+|..
T Consensus 181 ~tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GK--aVAEglL~q 258 (536)
T COG2024 181 STLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGK--AVAEGLLRQ 258 (536)
T ss_pred CceehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccH--HHHHHHHHH
Confidence 3568899888763222221111235799999999999987433 3455567777787887653222221 233446888
Q ss_pred CCCCceEEE
Q psy17090 90 LNLKNICLE 98 (373)
Q Consensus 90 lg~~~~~i~ 98 (373)
+|+++|.++
T Consensus 259 fGFe~F~Fr 267 (536)
T COG2024 259 FGFEKFRFR 267 (536)
T ss_pred hCccceeec
Confidence 999888775
No 112
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=81.16 E-value=1.2 Score=45.76 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=25.4
Q ss_pred eeEEEeeceeecCCCCC-CCCcceeeeEEEE-Ec
Q psy17090 38 KRLWYSGPMFRHERPQY-GRYRQFYQIGVEA-IG 69 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~-gr~ref~Q~g~ei-ig 69 (373)
-|+|++|+|||.|.... -+.-||+|.++|+ |+
T Consensus 280 ~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~ 313 (550)
T PTZ00401 280 PRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRIN 313 (550)
T ss_pred CCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhc
Confidence 49999999999987643 3446999999986 44
No 113
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=80.68 E-value=1.5 Score=44.59 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=28.1
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||+|....-+.-|||++.+|.-..+
T Consensus 241 ~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 274 (496)
T TIGR00499 241 EKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYAD 274 (496)
T ss_pred CceEEEecceecCCCCCcccchhheeehhhhcCC
Confidence 3999999999998766555679999999987653
No 114
>PLN02603 asparaginyl-tRNA synthetase
Probab=80.34 E-value=2.8 Score=43.23 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=26.9
Q ss_pred eeEEEeeceeecCCCCCC-CCcceeeeEEEEEcC
Q psy17090 38 KRLWYSGPMFRHERPQYG-RYRQFYQIGVEAIGF 70 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~g-r~ref~Q~g~eiig~ 70 (373)
-|+|++|++||.|+.... +.-||||+.+|+-..
T Consensus 322 ~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~ 355 (565)
T PLN02603 322 SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 355 (565)
T ss_pred cceEEEecceeCCCCCCccccccceeeeeeeecC
Confidence 389999999999877543 447999999998653
No 115
>PLN02221 asparaginyl-tRNA synthetase
Probab=80.00 E-value=2.6 Score=43.57 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=26.9
Q ss_pred eeEEEeeceeecCCCC-CCCCcceeeeEEEEEcC
Q psy17090 38 KRLWYSGPMFRHERPQ-YGRYRQFYQIGVEAIGF 70 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~-~gr~ref~Q~g~eiig~ 70 (373)
-|+|++|++||.|... .-+.-|||++.+|+-..
T Consensus 327 ~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~ 360 (572)
T PLN02221 327 SSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFA 360 (572)
T ss_pred CCeEEEccceecCCCCCCcccccccceeeeeecC
Confidence 3999999999998763 34567999999997654
No 116
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=79.04 E-value=2.9 Score=38.98 Aligned_cols=21 Identities=43% Similarity=0.795 Sum_probs=17.8
Q ss_pred CCCeeeeechHHHHHHHHHhh
Q psy17090 235 FVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 235 ~~pavGfai~le~l~~~l~~~ 255 (373)
..|+.||++|+|||+.++...
T Consensus 235 ~pp~~G~glGieRL~m~~~g~ 255 (269)
T cd00669 235 LPPHGGLGIGIDRLIMLMTNS 255 (269)
T ss_pred CCCCceEeeHHHHHHHHHhCC
Confidence 357889999999999998764
No 117
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=78.69 E-value=2.3 Score=42.14 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.9
Q ss_pred eEEEeeceeecCCCCCC-CCcceeeeEEEEEcCC
Q psy17090 39 RLWYSGPMFRHERPQYG-RYRQFYQIGVEAIGFP 71 (373)
Q Consensus 39 k~~y~g~vfR~~~~~~g-r~ref~Q~g~eiig~~ 71 (373)
|.|.+||+||-|++... +..|||+.++|+-..+
T Consensus 201 rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~ 234 (435)
T COG0017 201 RVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFAD 234 (435)
T ss_pred ceEEecCceecCCCCCcchhhhHheecceeccCc
Confidence 89999999999876543 4679999999998765
No 118
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=78.63 E-value=12 Score=38.77 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=57.6
Q ss_pred eeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhh-HHHHHH
Q psy17090 4 FIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDID-AELIIM 82 (373)
Q Consensus 4 f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d-~Evi~l 82 (373)
+.++.+.+.=.||+-+.+++.+.++.|. .+..|+|+|.+|.||.......-+.+++...++-+.|.. .| .++-..
T Consensus 408 l~NPis~e~s~lR~SLlp~LL~~~~~N~-~~~~~~~lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~---~df~d~Kg~ 483 (551)
T TIGR00471 408 VANPKTLEYTIVRTSLLPGLLETLSENK-HHELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSE---ANFNEIKSI 483 (551)
T ss_pred eCCCCchhhhHhHhhhHHHHHHHHHhcc-cCCCCeeEEEEEEEEEcCCccccccceeeEEEEEEECCC---CCHHHHHHH
Confidence 4455556667899999999999988765 557899999999999542110102334477777777742 33 344555
Q ss_pred HHHHHHHCCCC
Q psy17090 83 CSRLWKNLNLK 93 (373)
Q Consensus 83 ~~~~l~~lg~~ 93 (373)
+-.++..+|++
T Consensus 484 ve~ll~~l~i~ 494 (551)
T TIGR00471 484 VAALARELGIE 494 (551)
T ss_pred HHHHHHHcCCc
Confidence 66666778775
No 119
>PLN02532 asparagine-tRNA synthetase
Probab=77.44 E-value=3.1 Score=43.31 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=27.2
Q ss_pred eeEEEeeceeecCCCC-CCCCcceeeeEEEEEcC
Q psy17090 38 KRLWYSGPMFRHERPQ-YGRYRQFYQIGVEAIGF 70 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~-~gr~ref~Q~g~eiig~ 70 (373)
-|+|++|++||.|... .-+.-|||++.+|+-..
T Consensus 390 ~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~ 423 (633)
T PLN02532 390 GNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFS 423 (633)
T ss_pred CceEEEccceecCCCCCCcccccccceeeeehhc
Confidence 3999999999998765 34567999999997764
No 120
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=76.44 E-value=15 Score=31.49 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=59.2
Q ss_pred CCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEe--ccCccccCHHHHHHHHHHcCCCEEEEEccCccc----CCeEE
Q psy17090 263 HQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNC--VFNNIHESFKSQMKRANASNANFAAIIGENEII----NNTLI 336 (373)
Q Consensus 263 ~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~--~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~----~~~v~ 336 (373)
....|+|++-+...-.+++-+|+.|.+.|++|.+.. ...........+++.++..|++++-.....+.. ...+.
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dlI 103 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADLI 103 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccEE
Confidence 356677777666677899999999999999999843 221122455777888999998776655544321 23444
Q ss_pred EEECCCCCCCCCccceee--cHHHHHHHHHHH
Q psy17090 337 IKDLRNKYEDPTLKQISI--SFKDAENYFYKK 366 (373)
Q Consensus 337 Vk~l~~~~~~~~~~~~~v--~~~el~~~l~~~ 366 (373)
|=-+ -+.+ -...+ ...++++++.+.
T Consensus 104 IDal-~G~G----~~~~l~~~~~~~i~~iN~~ 130 (169)
T PF03853_consen 104 IDAL-FGTG----FSGPLRGPIAELIDWINAS 130 (169)
T ss_dssp EEES--STT----GGSCGSTCHHHHHHHHHHH
T ss_pred EEec-ccCC----CCCCcCHHHHHHHHHHhcc
Confidence 4443 2211 22222 366677766543
No 121
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=76.39 E-value=3.3 Score=39.77 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=33.2
Q ss_pred ceEEEEEeCCCCCccceeccCc----cchhHHhh---------------------cCCCCCeeeeechHHHHHHHHHhh
Q psy17090 202 RTVFEWTTDKLGSQNSICGGGR----YDFLIKKF---------------------SNKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 202 G~vFe~~~~~~g~~~~ia~GGR----YD~L~~~f---------------------~~~~~pavGfai~le~l~~~l~~~ 255 (373)
.--|++|.++ ..||+|+. |+.+..+| ..-..|..|||+|+|||+.++...
T Consensus 247 ~~~fdl~~~g----~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~ 321 (335)
T PF00152_consen 247 AERFDLYIPG----GEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGL 321 (335)
T ss_dssp BSEEEEEETT----EEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-
T ss_pred ccceeEEEeC----EEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCC
Confidence 4568999985 47887763 33333333 211357889999999999998765
No 122
>KOG2509|consensus
Probab=76.19 E-value=6.4 Score=38.75 Aligned_cols=90 Identities=24% Similarity=0.286 Sum_probs=61.6
Q ss_pred EeeecCCCceEeecCCChHHHHHHHHHhcCCC-CCCeeEEEeeceeecCCCCC-----CCCc--ceeeeEEEEEcCCCch
Q psy17090 3 SFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQY-----GRYR--QFYQIGVEAIGFPGPD 74 (373)
Q Consensus 3 ~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~-~~p~k~~y~g~vfR~~~~~~-----gr~r--ef~Q~g~eiig~~~~~ 74 (373)
..+|. |...+|-.-.-.|+|-+........ .+|+|+.-.+++||.|.... |-+| ||. =+|.|...+++
T Consensus 233 y~ld~--~~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~--KVE~Fvit~Pe 308 (455)
T KOG2509|consen 233 YVLDG--GDEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFE--KVEQFVITGPE 308 (455)
T ss_pred EeecC--CccceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeee--eeEEEEecCcc
Confidence 34453 3455666666788888876554433 58999999999999886443 3334 554 46777665443
Q ss_pred ----hhHHHHHHHHHHHHHCCCCceEE
Q psy17090 75 ----IDAELIIMCSRLWKNLNLKNICL 97 (373)
Q Consensus 75 ----~d~Evi~l~~~~l~~lg~~~~~i 97 (373)
.--|+|...-+++++||+. +.|
T Consensus 309 ~S~~~~eEmi~~~eef~qsLgip-~rv 334 (455)
T KOG2509|consen 309 DSWEMLEEMINNQEEFYQSLGLP-YRV 334 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCc-eeE
Confidence 3467899999999999996 554
No 123
>PRK07080 hypothetical protein; Validated
Probab=74.81 E-value=11 Score=35.70 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=66.7
Q ss_pred CCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCC-CCCCcceeeeEEEEEcCCCchhh--HHHHHHHHH
Q psy17090 9 NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQ-YGRYRQFYQIGVEAIGFPGPDID--AELIIMCSR 85 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~-~gr~ref~Q~g~eiig~~~~~~d--~Evi~l~~~ 85 (373)
.-..++|.|=.+.|+-=.++...........+=-.|.+||+|... .-|..+|.+--+=.+|.+....+ -..+..+.+
T Consensus 124 ~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iGt~e~v~~~r~~w~e~~~~ 203 (317)
T PRK07080 124 KPTDVVLTPAACYPVYPVLARRGALPADGRLVDVASYCFRHEPSLDPARMQLFRMREYVRIGTPEQIVAFRQSWIERGTA 203 (317)
T ss_pred CCCcceecccccccchhhhccCcccCCCCcEEEeeeeeeccCCCCCcHHHhheeeeEEEEecCHHHHHHHHHHHHHHHHH
Confidence 445789999999998777664322122345666789999998643 23778999999999996653222 235788888
Q ss_pred HHHHCCCCceEEEeCCCc
Q psy17090 86 LWKNLNLKNICLELNSIG 103 (373)
Q Consensus 86 ~l~~lg~~~~~i~i~~~~ 103 (373)
+.+.||++ +.+++.+=-
T Consensus 204 l~~~LgL~-~~ve~AnDP 220 (317)
T PRK07080 204 MADALGLP-VEIDLANDP 220 (317)
T ss_pred HHHHhCCc-eeEeecCCc
Confidence 89999997 788877643
No 124
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=71.69 E-value=36 Score=28.72 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=42.8
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHH---cCCCEEEEEc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANA---SNANFAAIIG 326 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~---~gi~~~vivg 326 (373)
++|.|+.-+.++...+.+.++.|...|+.+++...+ .+++.++..++.+. .|++-+|.+-
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~s--aHR~p~~l~~~~~~~~~~~~~viIa~A 63 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVAS--AHRTPERLLEFVKEYEARGADVIIAVA 63 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE----TTTSHHHHHHHHHHTTTTTESEEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEe--ccCCHHHHHHHHHHhccCCCEEEEEEC
Confidence 357888877888888999999999999999887765 56777766666554 5777555543
No 125
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=70.76 E-value=23 Score=32.32 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=39.1
Q ss_pred CceEEEEEcCc------------hhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 264 QCDIYIVHVGK------------EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 264 ~~~v~v~~~~~------------~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
|-+|.++|-.. ........+.++|++.||+|-+..++ . .++++.|.+.|++++=+-.
T Consensus 85 P~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP-----~-~~qi~~A~~~Gad~VELhT 153 (239)
T PF03740_consen 85 PDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP-----D-PEQIEAAKELGADRVELHT 153 (239)
T ss_dssp -SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-------HHHHHHHHHTT-SEEEEET
T ss_pred cCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC-----C-HHHHHHHHHcCCCEEEEeh
Confidence 45677777542 23566778899999999999998876 2 6699999999999876643
No 126
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=70.40 E-value=23 Score=35.64 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=56.6
Q ss_pred HHHHHHHH-HHHHhCCCc-EEEecCCCCCCCCccceEEEEEeCCCC--CccceeccCccc-hhHHhhcCCCCCeeeeech
Q psy17090 170 LDHFYGIQ-KILNYNNIS-YKINTKLVRGMDYYNRTVFEWTTDKLG--SQNSICGGGRYD-FLIKKFSNKFVPASGFAIG 244 (373)
Q Consensus 170 ~~~l~~l~-~~l~~~g~~-i~~D~~~~r~~~YYtG~vFe~~~~~~g--~~~~ia~GGRYD-~L~~~f~~~~~pavGfai~ 244 (373)
.++|..+. .++..+|.. +.|-|+.-|.-.|.-+.-.++++...+ .-..|++-|=++ +.+..+| -+.|.+.|.++
T Consensus 245 f~DLKgvLe~LLr~LG~~~vRFRPsekrskyYFPFTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~G-Id~PV~AFGIG 323 (533)
T TIGR00470 245 VDDGKAVAEGLLAQFGFTKFRFRPDEKKSKYYIPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYN-IDVPVMNLGLG 323 (533)
T ss_pred HHHHHHHHHHHHHHhCCceEEeccCcCCCCCcCCCceEEEEEEccCCCceEEEEeccccCHHHHHHcC-CCCceEEEEec
Confidence 34444443 334556764 888888776666777777888764311 115799999998 6667775 67788889999
Q ss_pred HHHHHHHH
Q psy17090 245 IERLIELI 252 (373)
Q Consensus 245 le~l~~~l 252 (373)
+|||+.+.
T Consensus 324 VERlAMi~ 331 (533)
T TIGR00470 324 VERLAMIL 331 (533)
T ss_pred HHHHHHHH
Confidence 99997664
No 127
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=69.43 E-value=0.28 Score=47.84 Aligned_cols=59 Identities=29% Similarity=0.583 Sum_probs=47.7
Q ss_pred EEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcCC-CCCeeeeechHHHHHH
Q psy17090 187 YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNK-FVPASGFAIGIERLIE 250 (373)
Q Consensus 187 i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~~-~~pavGfai~le~l~~ 250 (373)
...+..+.+..+||+|-+|+..... ..++|||||.+...++.. ..+++||++.++++..
T Consensus 324 ~~~~~~f~~~~~~~~~~~~e~~~~~-----r~~g~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~ 383 (390)
T COG3705 324 RRYAALFGRELDYYTGAAFEAAQAL-----RLAGGGRYDRLLTGLGASEEIPGVGFSLWLDRGVA 383 (390)
T ss_pred chhhhccCccchhhHHHHHHHHHHh-----cccCCeEEEecccccchHhhhcccceeEeecccce
Confidence 6678888899999999999986542 378999999998766542 5799999999888643
No 128
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=68.65 E-value=31 Score=31.34 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 277 ELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 277 ~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
.+....+.++|+++||+|-+..++ . .++++.|.+.|++++=+-..
T Consensus 109 ~~~l~~~i~~l~~~gI~VSLFiDP-----~-~~qi~~A~~~GAd~VELhTG 153 (237)
T TIGR00559 109 KDKLCELVKRFHAAGIEVSLFIDA-----D-KDQISAAAEVGADRIEIHTG 153 (237)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCC-----C-HHHHHHHHHhCcCEEEEech
Confidence 345668889999999999998875 2 67999999999998877543
No 129
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=68.38 E-value=6.8 Score=37.64 Aligned_cols=29 Identities=28% Similarity=0.629 Sum_probs=20.8
Q ss_pred hHHhhcCCCCCeeeeechHHHHHHHHHhh
Q psy17090 227 LIKKFSNKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 227 L~~~f~~~~~pavGfai~le~l~~~l~~~ 255 (373)
.++.+..--.|+.||++|+|||+.++...
T Consensus 287 yl~a~~~G~pp~~G~glGleRL~m~~~g~ 315 (329)
T cd00775 287 FVTALEYGMPPTGGLGIGIDRLVMLLTDS 315 (329)
T ss_pred HHHHHHCCCCCCCcEEecHHHHHHHHcCC
Confidence 44444322457889999999999988664
No 130
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=68.01 E-value=12 Score=30.37 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEecC-------CCCCCCCccceEE
Q psy17090 170 LDHFYGIQKILNYNNISYKINTK-------LVRGMDYYNRTVF 205 (373)
Q Consensus 170 ~~~l~~l~~~l~~~g~~i~~D~~-------~~r~~~YYtG~vF 205 (373)
..++..+.+.+.+.||++.+|=- ...+++||||.++
T Consensus 21 ~~d~k~~kk~m~~~gIkV~Idkk~kilP~n~aagFd~~tg~I~ 63 (132)
T PF15640_consen 21 VKDIKNFKKEMGKRGIKVKIDKKDKILPENKAAGFDPETGEIY 63 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCccCCCCccccccCCCCCCcEE
Confidence 46778888889999999887754 3348999999863
No 131
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=67.82 E-value=33 Score=31.12 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 277 ELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 277 ~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
......+.++|+++||+|-+..++ . .++++.|.+.|++++=+-..
T Consensus 109 ~~~l~~~i~~l~~~gI~VSLFiDP-----d-~~qi~~A~~~GAd~VELhTG 153 (234)
T cd00003 109 AEKLKPIIERLKDAGIRVSLFIDP-----D-PEQIEAAKEVGADRVELHTG 153 (234)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCC-----C-HHHHHHHHHhCcCEEEEech
Confidence 455678889999999999988875 2 56999999999998877543
No 132
>PLN02532 asparagine-tRNA synthetase
Probab=67.04 E-value=6.3 Score=41.14 Aligned_cols=50 Identities=26% Similarity=0.529 Sum_probs=35.5
Q ss_pred eEEEEEeCCCCCccceeccC----ccchhHHhhcC-----------------CCCCeeeeechHHHHHHHHHhh
Q psy17090 203 TVFEWTTDKLGSQNSICGGG----RYDFLIKKFSN-----------------KFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 203 ~vFe~~~~~~g~~~~ia~GG----RYD~L~~~f~~-----------------~~~pavGfai~le~l~~~l~~~ 255 (373)
--|++++++.| .|++|+ |||.|..++.. -..|.-||++|+|||+.++...
T Consensus 545 ~~FDLlvp~~G---EIigGsqRE~r~e~L~~~~ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl 615 (633)
T PLN02532 545 AAFDLVVPKVG---TVITGSQNEERMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGL 615 (633)
T ss_pred EEEEEecCCCe---EEeeCcEeHHHHHHHHHHHHHcCCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCC
Confidence 46777777543 577776 57777665521 1358889999999999998764
No 133
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=66.53 E-value=36 Score=31.03 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 277 ELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 277 ~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
......+.++|+++||+|-+..++ . .++++.|.+.|++++=+-..
T Consensus 112 ~~~l~~~i~~L~~~gIrVSLFidP-----~-~~qi~~A~~~GAd~VELhTG 156 (239)
T PRK05265 112 FDKLKPAIARLKDAGIRVSLFIDP-----D-PEQIEAAAEVGADRIELHTG 156 (239)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCC-----C-HHHHHHHHHhCcCEEEEech
Confidence 455668889999999999888875 3 56999999999999877543
No 134
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=66.29 E-value=6.3 Score=40.83 Aligned_cols=50 Identities=30% Similarity=0.551 Sum_probs=35.9
Q ss_pred eEEEEEeCCCCCccceeccC----ccchhHHhhcC-----------------CCCCeeeeechHHHHHHHHHhh
Q psy17090 203 TVFEWTTDKLGSQNSICGGG----RYDFLIKKFSN-----------------KFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 203 ~vFe~~~~~~g~~~~ia~GG----RYD~L~~~f~~-----------------~~~pavGfai~le~l~~~l~~~ 255 (373)
--|++++++.| .|++|| ||+.|..+... -..|.-||++|+|||+.++...
T Consensus 498 ~~fDLlvpgiG---EI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl 568 (586)
T PTZ00425 498 AAMDVLVPKIG---EVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGV 568 (586)
T ss_pred EEEeEEccCce---EEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCC
Confidence 56778887543 677776 67777665421 1358889999999999998664
No 135
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=65.56 E-value=23 Score=36.98 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=54.4
Q ss_pred CCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCC-cceeeeEEEEEcCCCchhhHH-HHHHHHHH
Q psy17090 9 NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRY-RQFYQIGVEAIGFPGPDIDAE-LIIMCSRL 86 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~-ref~Q~g~eiig~~~~~~d~E-vi~l~~~~ 86 (373)
+.+.=.||+-+.+++...++.|... ..|+|+|.+|.||-.... .... +|..-.++=+.|.. ++.+ +-.++..+
T Consensus 450 s~e~~vlRtSLlPgLL~~l~~N~~~-~~p~klFEiG~V~~~~~~-~~~~~~e~~~la~~~~g~~---~~f~~ikg~le~l 524 (597)
T PLN02265 450 SADFEVVRTSLLPGLLKTLGHNKDA-PKPIKLFEVSDVVLLDES-KDVGARNSRRLAALYCGTT---SGFEVIHGLVDRI 524 (597)
T ss_pred chhHHHHHHhhHHHHHHHHHHhhcC-CCCeeEEEeEeEEecCCc-ccCCcchhhEEEEEEECCC---CCHhhHHHHHHHH
Confidence 4444568999999999998876543 459999999999954321 1111 56667777777743 3444 44566667
Q ss_pred HHHCCCC
Q psy17090 87 WKNLNLK 93 (373)
Q Consensus 87 l~~lg~~ 93 (373)
|..+++.
T Consensus 525 l~~l~i~ 531 (597)
T PLN02265 525 MEVLGIP 531 (597)
T ss_pred HHHcCCc
Confidence 7888875
No 136
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=64.47 E-value=5.7 Score=44.44 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=28.4
Q ss_pred eeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 38 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 38 ~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|+|++|++||+|....-+.-||+++.+|.-..+
T Consensus 839 erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~d 872 (1094)
T PRK02983 839 ERVFELGRNFRNEGVDATHNPEFTLLEAYQAHAD 872 (1094)
T ss_pred CceEEEcceecCCCCCCCccccccchhhhhhcCC
Confidence 4999999999998776556679999999988753
No 137
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=63.54 E-value=27 Score=32.08 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=42.3
Q ss_pred CC--cEEEecCCCCCCCCcc-ceEEEEEe---CCCCCccceeccCccc-hhHHhhcC-CCCCeeeeechHHHHHHHH
Q psy17090 184 NI--SYKINTKLVRGMDYYN-RTVFEWTT---DKLGSQNSICGGGRYD-FLIKKFSN-KFVPASGFAIGIERLIELI 252 (373)
Q Consensus 184 g~--~i~~D~~~~r~~~YYt-G~vFe~~~---~~~g~~~~ia~GGRYD-~L~~~f~~-~~~pavGfai~le~l~~~l 252 (373)
|. ++.+.++.. .|+. |.-..+++ .+.+ -..|++.|-.+ .+++.+|- ...|++.|++|+|||+.+.
T Consensus 155 G~~~~~r~~ps~f---PftePs~e~~i~~~~~~~~~-wiEvgg~G~vhP~Vl~~~gid~~~~~~A~G~GleRlam~~ 227 (247)
T PF01409_consen 155 GIDVKVRFRPSYF---PFTEPSREADIYCGVCKGGG-WIEVGGCGMVHPEVLENWGIDEEYPGFAFGLGLERLAMLK 227 (247)
T ss_dssp TTTEEEEEEECEE---TTEEEEEEEEEEEECTTTTC-EEEEEEEEEE-HHHHHHTT--TTSEEEEEEEEHHHHHHHH
T ss_pred hcccceEeecCCC---CcccCCeEEEEEEeeccCCC-ceEEeecccccHhhhhccCcCccceEEEecCCHHHHHHHH
Confidence 65 477877653 2332 66666666 2222 24688888886 66677762 2679999999999997654
No 138
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=62.55 E-value=6.9 Score=38.85 Aligned_cols=40 Identities=35% Similarity=0.785 Sum_probs=30.6
Q ss_pred cceeccC----ccchhHHhhcC-----------------CCCCeeeeechHHHHHHHHHhh
Q psy17090 216 NSICGGG----RYDFLIKKFSN-----------------KFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 216 ~~ia~GG----RYD~L~~~f~~-----------------~~~pavGfai~le~l~~~l~~~ 255 (373)
..|.+|| +||.|++++.. -..|..||++|+|||+..+...
T Consensus 357 gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl 417 (435)
T COG0017 357 GEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGL 417 (435)
T ss_pred eeeecceeccccHHHHHHHHHHcCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCC
Confidence 3566666 68988887741 1468889999999999998764
No 139
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=58.46 E-value=82 Score=25.55 Aligned_cols=22 Identities=5% Similarity=0.060 Sum_probs=20.0
Q ss_pred cCHHHHHHHHHHcCCCEEEEEc
Q psy17090 305 ESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 305 ~sl~~~~~~a~~~gi~~~vivg 326 (373)
.++.+.++.....|+..++++.
T Consensus 56 p~~~eaL~~l~~~G~~~V~V~P 77 (127)
T cd03412 56 DTPEEALAKLAADGYTEVIVQS 77 (127)
T ss_pred CCHHHHHHHHHHCCCCEEEEEe
Confidence 7999999999999999998874
No 140
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=57.57 E-value=99 Score=28.15 Aligned_cols=134 Identities=17% Similarity=0.180 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCCCc-EEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccc---hhHHhhcCC-CCCeeeee----
Q psy17090 172 HFYGIQKILNYNNIS-YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYD---FLIKKFSNK-FVPASGFA---- 242 (373)
Q Consensus 172 ~l~~l~~~l~~~g~~-i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD---~L~~~f~~~-~~pavGfa---- 242 (373)
.+.+..+.++..|++ +.+|+ ...-..+.|.+-+-. ..+++..|-..+ .+++.+... +.|.+-++
T Consensus 15 ~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG~~I~~a-----~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 15 TTLEILKALVEAGADIIELGI--PFSDPVADGPVIQAA-----SERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred HHHHHHHHHHHCCCCEEEECC--CCCCCCCCCHHHHHH-----HHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 344445556666886 77775 222233444432211 124566666444 344444321 35533222
Q ss_pred ---chHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCC
Q psy17090 243 ---IGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNA 319 (373)
Q Consensus 243 ---i~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi 319 (373)
.|+++.+..+.+.| .+-++++.=+ .++...+.+.+++.|++..+...+ .+..+.++.......
T Consensus 88 ~~~~G~~~fi~~~~~aG--------~~giiipDl~--~ee~~~~~~~~~~~g~~~i~~i~P----~T~~~~i~~i~~~~~ 153 (242)
T cd04724 88 ILQYGLERFLRDAKEAG--------VDGLIIPDLP--PEEAEEFREAAKEYGLDLIFLVAP----TTPDERIKKIAELAS 153 (242)
T ss_pred HHHhCHHHHHHHHHHCC--------CcEEEECCCC--HHHHHHHHHHHHHcCCcEEEEeCC----CCCHHHHHHHHhhCC
Confidence 23577777776655 3334443211 235567778888888888777776 565666666665556
Q ss_pred CEEEEEc
Q psy17090 320 NFAAIIG 326 (373)
Q Consensus 320 ~~~vivg 326 (373)
.++.+++
T Consensus 154 ~~vy~~s 160 (242)
T cd04724 154 GFIYYVS 160 (242)
T ss_pred CCEEEEe
Confidence 6655554
No 141
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=56.21 E-value=53 Score=28.24 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=21.1
Q ss_pred cceeccCccchhHHhhcCCCCCeeeeechHHHHHHHHHhh
Q psy17090 216 NSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 216 ~~ia~GGRYD~L~~~f~~~~~pavGfai~le~l~~~l~~~ 255 (373)
-.|+.||=++-|-+.+ +.|.|-..+.---++.++.+.
T Consensus 37 ViIsRG~ta~~lr~~~---~iPVV~I~~s~~Dil~al~~a 73 (176)
T PF06506_consen 37 VIISRGGTAELLRKHV---SIPVVEIPISGFDILRALAKA 73 (176)
T ss_dssp EEEEEHHHHHHHHCC----SS-EEEE---HHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHhC---CCCEEEECCCHhHHHHHHHHH
Confidence 3566777666554443 478888777777777777664
No 142
>PRK03972 ribosomal biogenesis protein; Validated
Probab=55.91 E-value=1.1e+02 Score=27.40 Aligned_cols=69 Identities=6% Similarity=-0.045 Sum_probs=50.9
Q ss_pred cCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCC
Q psy17090 272 VGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNK 343 (373)
Q Consensus 272 ~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~ 343 (373)
.+...-....+.+++|..-=-.+....++ +.++++.+++|.+.|...+|+|+++--..+.+.|-++-.+
T Consensus 6 TSr~PS~rtr~F~keL~~v~Pns~~i~RG---k~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~g 74 (208)
T PRK03972 6 TSHRPTRRTRSFGHDLERVFPNSLYLTRG---KKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPE 74 (208)
T ss_pred CCCCccHHHHHHHHHHHHhCCCCEEEecC---CccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCC
Confidence 34344455678888888763234444454 3799999999999999999999998666788888887543
No 143
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=55.56 E-value=43 Score=30.14 Aligned_cols=57 Identities=16% Similarity=0.027 Sum_probs=42.1
Q ss_pred CceEEEEEcCc------------hhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 264 QCDIYIVHVGK------------EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 264 ~~~v~v~~~~~------------~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
|.+|.++|-.. ........++++|.+.|++|.+..++ -..+++.|...|.+++=+-.
T Consensus 85 P~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD~------d~~qi~aa~~~gA~~IELhT 153 (243)
T COG0854 85 PHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFIDP------DPEQIEAAAEVGAPRIELHT 153 (243)
T ss_pred CCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeCC------CHHHHHHHHHhCCCEEEEec
Confidence 45666666542 12345567889999999999988775 25689999999999987753
No 144
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=54.45 E-value=88 Score=27.84 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=50.3
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCc--ccCCeEEEEEC
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENE--IINNTLIIKDL 340 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e--~~~~~v~Vk~l 340 (373)
..|+|++-..+.-.+++-.|+.|+..|+.|.+..-.+.....-+.+..+.+..++++.+-+.+.+ ..+--+.|=-+
T Consensus 50 ~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~~~~~~~dvIVDal 127 (203)
T COG0062 50 RRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELEDEPESADVIVDAL 127 (203)
T ss_pred CEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeecccccccccCCEEEEec
Confidence 45888876666778999999999999999998875421223356666666678887555554421 33444444433
No 145
>KOG2298|consensus
Probab=53.86 E-value=2.9 Score=41.53 Aligned_cols=61 Identities=31% Similarity=0.346 Sum_probs=44.0
Q ss_pred CCc-eEeecCCChH----HHHHHHHHhcCCCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCC
Q psy17090 9 NGD-NLSLRPEGTA----SVIRSVIENNLIYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFP 71 (373)
Q Consensus 9 ~G~-~l~LRpD~T~----~iaR~~~~~~~~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~ 71 (373)
+|. .--|||+... .|-|.+--|+ +..|.--.++|..||+| .|..| |.|||+++-+|-|-.+
T Consensus 178 sG~~kgyLRPETAQG~FlNFkrlle~N~--~KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIEHFvdP 246 (599)
T KOG2298|consen 178 SGGLKGYLRPETAQGQFLNFKRLLEFNQ--GKLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIEHFVDP 246 (599)
T ss_pred CCCcccccCccccccccccHHHHHHhcC--CCCcchHHHhchHhhhccCcccCceeEEEeehHHhhccCCC
Confidence 443 4568998543 3455543332 35899999999999998 55555 7899999999998754
No 146
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=53.56 E-value=86 Score=26.65 Aligned_cols=57 Identities=12% Similarity=0.034 Sum_probs=40.2
Q ss_pred EEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHH---HHHcCCCEEEEEc
Q psy17090 268 YIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR---ANASNANFAAIIG 326 (373)
Q Consensus 268 ~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~---a~~~gi~~~vivg 326 (373)
.|+..+.+++..+.+.++.|...|+..++...+ .++++++..++ ++..|+.-+|.+.
T Consensus 2 ~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~S--aHRtp~~~~~~~~~a~~~g~~viIa~A 61 (156)
T TIGR01162 2 GIIMGSDSDLPTMKKAADILEEFGIPYELRVVS--AHRTPELMLEYAKEAEERGIKVIIAGA 61 (156)
T ss_pred EEEECcHhhHHHHHHHHHHHHHcCCCeEEEEEC--cccCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 455556677888889999999999998887655 45666666555 4557875555443
No 147
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=53.52 E-value=1e+02 Score=24.67 Aligned_cols=72 Identities=13% Similarity=-0.051 Sum_probs=41.4
Q ss_pred chHHHHHHHHHhhcCCCCCCCCceEEEEEc-CchhHHHHHHHHHHHHHcCC-eEEEEeccCccccCHHHHHHHHHHcCCC
Q psy17090 243 IGIERLIELIKKININHNFSHQCDIYIVHV-GKEAELKAFVLSENLRTLGL-KVILNCVFNNIHESFKSQMKRANASNAN 320 (373)
Q Consensus 243 i~le~l~~~l~~~~~~~~~~~~~~v~v~~~-~~~~~~~~~~la~~Lr~~Gi-~v~~~~~~~~~~~sl~~~~~~a~~~gi~ 320 (373)
.-.+.+.+...+.+ +++++++. .......+.++++.|++.|. .+.+...+ ....+......+.|+.
T Consensus 37 vp~e~~~~~a~~~~--------~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG----~~~~~~~~~~~~~G~d 104 (122)
T cd02071 37 QTPEEIVEAAIQED--------VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGG----IIPPEDYELLKEMGVA 104 (122)
T ss_pred CCHHHHHHHHHHcC--------CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEEC----CCCHHHHHHHHHCCCC
Confidence 44555555555432 44444443 34455666777888888866 44445554 3445556666777877
Q ss_pred EEEEEc
Q psy17090 321 FAAIIG 326 (373)
Q Consensus 321 ~~vivg 326 (373)
-++-.|
T Consensus 105 ~~~~~~ 110 (122)
T cd02071 105 EIFGPG 110 (122)
T ss_pred EEECCC
Confidence 666544
No 148
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=51.81 E-value=87 Score=25.68 Aligned_cols=59 Identities=14% Similarity=0.269 Sum_probs=34.7
Q ss_pred ceEEEEEcCchhHHHH-HHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 265 CDIYIVHVGKEAELKA-FVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~-~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
..|++...+.+.-..+ --++..|+..|+.|.-.-.. .+.++..+.|.+.+.+.+++-+-
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~----~s~e~~v~aa~e~~adii~iSsl 62 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF----QTPEEIARQAVEADVHVVGVSSL 62 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC----CCHHHHHHHHHHcCCCEEEEcCc
Confidence 4455555544322222 23446677778777544444 67777777777777777776553
No 149
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=51.76 E-value=36 Score=27.23 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=28.1
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEe
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNC 298 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~ 298 (373)
..|+.|+++|. ....+++.++.|+++|+++.+..
T Consensus 9 g~di~iia~G~-~~~~al~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 9 GADITIIAYGS-MVEEALEAAEELEEEGIKAGVID 42 (124)
T ss_dssp SSSEEEEEETT-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeehH-HHHHHHHHHHHHHHcCCceeEEe
Confidence 35788888875 46788999999999999988764
No 150
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=51.42 E-value=55 Score=35.54 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=55.8
Q ss_pred eeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCc-------hhh
Q psy17090 4 FIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGP-------DID 76 (373)
Q Consensus 4 f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~-------~~d 76 (373)
+.++.+-+.=.||+-+.+++.+.++.|...+..++|+|.+|.||.... ..++|..-.++=+-|.... ..|
T Consensus 531 l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFEiG~Vf~~~~---~~~~e~~~la~~~~g~~~~~~w~~~~~~d 607 (791)
T PRK00629 531 LLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALFEIGRVFLPDG---DLPREPEHLAGVLTGNRVEESWGGKRPVD 607 (791)
T ss_pred EeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeeeeeCCCC---CCCcchhEEEEEEECCCccccccccCCCC
Confidence 344445555678999999999998877654467999999999996421 2345666677767773210 123
Q ss_pred -HHHHHHHHHHHHHCCCC
Q psy17090 77 -AELIIMCSRLWKNLNLK 93 (373)
Q Consensus 77 -~Evi~l~~~~l~~lg~~ 93 (373)
.++-..+..+|..+|++
T Consensus 608 f~~~Kg~le~ll~~l~~~ 625 (791)
T PRK00629 608 FFDLKGDVEALLEALGLP 625 (791)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 33444555566666664
No 151
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=50.72 E-value=13 Score=34.90 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=17.7
Q ss_pred CCCeeeeechHHHHHHHHHhh
Q psy17090 235 FVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 235 ~~pavGfai~le~l~~~l~~~ 255 (373)
..|+.||++|+|||+.++...
T Consensus 246 ~pP~~G~giGidRL~m~~~g~ 266 (280)
T cd00777 246 APPHGGIALGLDRLVMLLTGS 266 (280)
T ss_pred CCCCCeEeEhHHHHHHHHcCC
Confidence 347889999999999998664
No 152
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=49.01 E-value=73 Score=25.37 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=30.1
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCE
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANF 321 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~ 321 (373)
++|+.++..... ...++.+++.+.|++..+...+ ..-.+..+.|++.|++.
T Consensus 55 ~iDlavv~~~~~---~~~~~v~~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 55 PIDLAVVCVPPD---KVPEIVDEAAALGVKAVWLQPG----AESEELIEAAREAGIRV 105 (116)
T ss_dssp T-SEEEE-S-HH---HHHHHHHHHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EE
T ss_pred CCCEEEEEcCHH---HHHHHHHHHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEE
Confidence 577777776543 3446666777778888777766 66677788888888763
No 153
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=48.49 E-value=14 Score=35.33 Aligned_cols=50 Identities=28% Similarity=0.577 Sum_probs=32.4
Q ss_pred eEEEEEeCCCCCccceeccCc----cchhHHhhc-----------------CCCCCeeeeechHHHHHHHHHhh
Q psy17090 203 TVFEWTTDKLGSQNSICGGGR----YDFLIKKFS-----------------NKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 203 ~vFe~~~~~~g~~~~ia~GGR----YD~L~~~f~-----------------~~~~pavGfai~le~l~~~l~~~ 255 (373)
--|++|.++. ..|++|+. |+.+..+|. .-..|+.||++|+|||+.++...
T Consensus 238 ~~fdl~~~G~---~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~ 308 (322)
T cd00776 238 ESFDLLMPGV---GEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGL 308 (322)
T ss_pred EEEEEEcCCC---eEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCC
Confidence 4588888762 35666653 333433332 11357889999999999988664
No 154
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=48.48 E-value=84 Score=30.56 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=40.9
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
.|+.|+..| .....+++.++.|.++||++.+..-.. -+.+++..=.....+.+.+|++.++-
T Consensus 229 ~dvtIia~G-~~v~~Al~Aa~~L~~~GI~v~VId~~~--ikPlD~~~l~~~~~~t~~vvtvEE~~ 290 (356)
T PLN02683 229 KDVTIVAFS-KMVGYALKAAEILAKEGISAEVINLRS--IRPLDRDTINASVRKTNRLVTVEEGW 290 (356)
T ss_pred CCEEEEEcc-HHHHHHHHHHHHHHhcCCCEEEEECCC--CCccCHHHHHHHHhhcCeEEEEeCCC
Confidence 478888875 466789999999999999999875431 12222222222234556788887754
No 155
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=47.27 E-value=39 Score=33.94 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=44.0
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCee--EEEeeceeecCCCCCCCCcceeeeEEEEEcC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKR--LWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k--~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~ 70 (373)
..+||.-.++--+|.+.++. ....|.| +...|.|||++....-++-.|+|...=.+..
T Consensus 107 ~~lLRTHTSa~q~~~~~~~~-~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 107 QHLLRAHTSAHELECFQGGL-DDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIRK 166 (460)
T ss_pred CceeCCCCcHHHHHHHHhcc-ccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEec
Confidence 46899998888888876432 1124666 9999999999876677888999998555554
No 156
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=46.71 E-value=53 Score=35.66 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=45.2
Q ss_pred eecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcC
Q psy17090 5 IDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70 (373)
Q Consensus 5 ~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~ 70 (373)
.++.+-..=.||+-+.+++.+.++.|......++|+|.+|.||..... . ++|....++=+.|.
T Consensus 538 ~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG~V~~~~~~--~-~~e~~~La~~~~g~ 600 (798)
T TIGR00472 538 KNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIGKVFAKDGL--G-VKEQLRLAILISGE 600 (798)
T ss_pred eCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeecccCCCCC--C-cchhhEEEEEEECC
Confidence 333344445789999999999988776544679999999999953211 1 56777777777774
No 157
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=45.66 E-value=30 Score=35.36 Aligned_cols=21 Identities=38% Similarity=0.786 Sum_probs=17.4
Q ss_pred CCCeeeeechHHHHHHHHHhh
Q psy17090 235 FVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 235 ~~pavGfai~le~l~~~l~~~ 255 (373)
-.|+-||+||+|||+.++...
T Consensus 469 ~PP~gG~GiGiDRLvMlltg~ 489 (505)
T PRK12445 469 LPPTAGLGIGIDRMIMLFTNS 489 (505)
T ss_pred CCCCCeEEEhHHHHHHHHcCC
Confidence 357889999999999998663
No 158
>PRK06462 asparagine synthetase A; Reviewed
Probab=44.92 E-value=17 Score=35.07 Aligned_cols=50 Identities=24% Similarity=0.506 Sum_probs=35.0
Q ss_pred EEEEEeCCCCCccceeccC----ccchhHHhhcC-----------------CCCCeeeeechHHHHHHHHHhh
Q psy17090 204 VFEWTTDKLGSQNSICGGG----RYDFLIKKFSN-----------------KFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 204 vFe~~~~~~g~~~~ia~GG----RYD~L~~~f~~-----------------~~~pavGfai~le~l~~~l~~~ 255 (373)
-|++|.++.+ ..|++|+ ||+.+..+... -..|+.||++|+|||+.++...
T Consensus 247 rFdL~~~~g~--gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~ 317 (335)
T PRK06462 247 NYDLLLPEGY--GEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTRYICGL 317 (335)
T ss_pred EEEEEeeCCC--cEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCC
Confidence 6899986322 4777777 56666654310 1357889999999999998664
No 159
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.12 E-value=1.2e+02 Score=23.77 Aligned_cols=70 Identities=13% Similarity=-0.018 Sum_probs=40.1
Q ss_pred chHHHHHHHHHhhcCCCCCCCCceEEEEEcC-chhHHHHHHHHHHHHHcCC-eEEEEeccCccccCHHHHHHHHHHcCCC
Q psy17090 243 IGIERLIELIKKININHNFSHQCDIYIVHVG-KEAELKAFVLSENLRTLGL-KVILNCVFNNIHESFKSQMKRANASNAN 320 (373)
Q Consensus 243 i~le~l~~~l~~~~~~~~~~~~~~v~v~~~~-~~~~~~~~~la~~Lr~~Gi-~v~~~~~~~~~~~sl~~~~~~a~~~gi~ 320 (373)
...+.+...+.+. .+++..++.. ......+.++++.+++.+. .+.+...+ .-....-+.++..|+.
T Consensus 37 ~~~~~l~~~~~~~--------~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG----~~~~~~~~~~~~~G~D 104 (119)
T cd02067 37 VPPEEIVEAAKEE--------DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG----AIVTRDFKFLKEIGVD 104 (119)
T ss_pred CCHHHHHHHHHHc--------CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC----CCCChhHHHHHHcCCe
Confidence 3455555555443 2455555544 4456677788888888865 55555554 2222222467777876
Q ss_pred EEEE
Q psy17090 321 FAAI 324 (373)
Q Consensus 321 ~~vi 324 (373)
.++-
T Consensus 105 ~~~~ 108 (119)
T cd02067 105 AYFG 108 (119)
T ss_pred EEEC
Confidence 6554
No 160
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=43.84 E-value=1.2e+02 Score=25.82 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=36.3
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
.+|.+|+..+.+.. ..++.+||+.|.+|...-.+ .+....+.. -|...|-+.++
T Consensus 105 ~iD~~vLvSgD~DF---~~Lv~~lre~G~~V~v~g~~----~~ts~~L~~----acd~FI~L~~~ 158 (160)
T TIGR00288 105 NIDAVALVTRDADF---LPVINKAKENGKETIVIGAE----PGFSTALQN----SADIAIILGEE 158 (160)
T ss_pred CCCEEEEEeccHhH---HHHHHHHHHCCCEEEEEeCC----CCChHHHHH----hcCeEEeCCCC
Confidence 47777766665544 37888999999999887644 445545544 35666666654
No 161
>PRK09350 poxB regulator PoxA; Provisional
Probab=43.67 E-value=19 Score=34.18 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=17.0
Q ss_pred CCCeeeeechHHHHHHHHHh
Q psy17090 235 FVPASGFAIGIERLIELIKK 254 (373)
Q Consensus 235 ~~pavGfai~le~l~~~l~~ 254 (373)
..|+.||++|+|||+.++..
T Consensus 280 ~pp~~G~giGidRL~m~~~g 299 (306)
T PRK09350 280 LPDCSGVALGVDRLIMLALG 299 (306)
T ss_pred CCCCCceEecHHHHHHHHcC
Confidence 45788999999999988755
No 162
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=43.16 E-value=17 Score=37.86 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=23.1
Q ss_pred cchhHHhhcCCCCCeeeeechHHHHHHHHHhhc
Q psy17090 224 YDFLIKKFSNKFVPASGFAIGIERLIELIKKIN 256 (373)
Q Consensus 224 YD~L~~~f~~~~~pavGfai~le~l~~~l~~~~ 256 (373)
|..++..|.--..|..|+|+|+||++.++....
T Consensus 515 ~~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~~ 547 (588)
T PRK00476 515 FGFLLDALKYGAPPHGGIAFGLDRLVMLLAGAD 547 (588)
T ss_pred HHHHHHHHhcCCCCCcceeccHHHHHHHHcCCc
Confidence 344454443224678899999999999997653
No 163
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=42.52 E-value=59 Score=29.93 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCcc
Q psy17090 306 SFKSQMKRANASNANFAAIIGENEI 330 (373)
Q Consensus 306 sl~~~~~~a~~~gi~~~vivg~~e~ 330 (373)
+++++.+.+.+.+=.-++.+|.+++
T Consensus 116 d~~ea~~~~~~~~~rVflt~G~~~l 140 (257)
T COG2099 116 DIEEAAEAAKQLGRRVFLTTGRQNL 140 (257)
T ss_pred CHHHHHHHHhccCCcEEEecCccch
Confidence 4455555555555444444555443
No 164
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.40 E-value=3.1e+02 Score=27.43 Aligned_cols=93 Identities=16% Similarity=0.041 Sum_probs=60.0
Q ss_pred CCCeeeeech-HHHHHHHHHhhcCCCCCCCCceEEEEEcCc-------hhHHHHHHHHHHHHHcCCeEEE------Eecc
Q psy17090 235 FVPASGFAIG-IERLIELIKKININHNFSHQCDIYIVHVGK-------EAELKAFVLSENLRTLGLKVIL------NCVF 300 (373)
Q Consensus 235 ~~pavGfai~-le~l~~~l~~~~~~~~~~~~~~v~v~~~~~-------~~~~~~~~la~~Lr~~Gi~v~~------~~~~ 300 (373)
.+-++|+--+ +..|+++|+++...+ ....||+|-..|. .++.-++.++..+++.-++-+. .+.+
T Consensus 325 rR~~~G~D~nRl~mllAVLek~~gl~--l~~~DvyvnvaGG~ki~EPAaDLAva~Al~SS~~~~~lp~~~v~~GEvgL~G 402 (456)
T COG1066 325 RRVAVGLDQNRLAMLLAVLEKRLGLP--LGDQDVYVNVAGGVKVTEPAADLAVALALVSSFRNRPLPQDTVVFGEVGLSG 402 (456)
T ss_pred ceEEeccChhHHHHHHHHHHHhcCCc--ccCccEEEEccCCEecCCchHHHHHHHHHHHHhcCCCCCCCeEEEEeeccCc
Confidence 3457786555 555566666664333 4567888855542 3566778888888876444322 2222
Q ss_pred C-ccccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 301 N-NIHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 301 ~-~~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
. |--.+++..++.|.+.|.+.+++-..+.
T Consensus 403 eIR~V~~~~~RlkEA~klGFk~aivP~~~~ 432 (456)
T COG1066 403 EIRPVPRGERRLKEAAKLGFKRAIVPKGNI 432 (456)
T ss_pred eeeecCcHHHHHHHHHHcCCCEEEccCCcC
Confidence 1 1236789999999999999999987653
No 165
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=40.33 E-value=2.1e+02 Score=23.58 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=10.7
Q ss_pred ecHHHHHHHHHHHHH
Q psy17090 354 ISFKDAENYFYKKII 368 (373)
Q Consensus 354 v~~~el~~~l~~~~~ 368 (373)
.++++++++|.+.+.
T Consensus 121 ~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 121 TDPEEAIDDLKKDLN 135 (137)
T ss_pred CCHHHHHHHHHHHhc
Confidence 367888888876654
No 166
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=40.20 E-value=22 Score=33.73 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=17.6
Q ss_pred CCCeeeeechHHHHHHHHHhh
Q psy17090 235 FVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 235 ~~pavGfai~le~l~~~l~~~ 255 (373)
..|+.||+||+|||+.++...
T Consensus 275 ~pP~~G~GiGieRL~m~l~g~ 295 (304)
T TIGR00462 275 LPECSGVALGVDRLLMLALGA 295 (304)
T ss_pred CCCCCceEEcHHHHHHHHhCC
Confidence 457889999999999988653
No 167
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=39.87 E-value=1e+02 Score=26.06 Aligned_cols=52 Identities=25% Similarity=0.163 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 276 AELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
.+.-+..+.+.|++.|++|.+.-+. -...++.+..+.|+..++..+|-+--+
T Consensus 26 ~l~ia~~l~~~L~~~g~~V~~tr~~-d~~~~l~~R~~~an~~~ad~~isiH~n 77 (175)
T PF01520_consen 26 NLDIALRLKKELEKHGIKVYLTRDN-DSDVSLQERAALANSWGADLFISIHFN 77 (175)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESSSS-SHCCCHHHHHHHHHHTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCC-CCCCCHHHHHHHHHhcccCEEEEEeec
Confidence 3567888999999999888776543 123589999999999999999998654
No 168
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=39.47 E-value=1.9e+02 Score=22.72 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEE
Q psy17090 281 FVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAII 325 (373)
Q Consensus 281 ~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~viv 325 (373)
.-++..|+..|+.|...-.. .+.++..+.+.+.+...+.+-
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~----~~~~~l~~~~~~~~pdvV~iS 57 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVD----VPPEEIVEAAKEEDADAIGLS 57 (119)
T ss_pred HHHHHHHHHCCCEEEECCCC----CCHHHHHHHHHHcCCCEEEEe
Confidence 34556666777776333333 566666666666666655553
No 169
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=39.43 E-value=20 Score=37.26 Aligned_cols=21 Identities=38% Similarity=0.781 Sum_probs=18.1
Q ss_pred CCCeeeeechHHHHHHHHHhh
Q psy17090 235 FVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 235 ~~pavGfai~le~l~~~l~~~ 255 (373)
..|.-|+|+|+|||+.+|...
T Consensus 521 ~PPhgG~alG~DRlvmlLt~~ 541 (583)
T TIGR00459 521 TPPHAGFALGLDRLMMLLTGT 541 (583)
T ss_pred CCCcCceeccHHHHHHHHcCC
Confidence 357889999999999999774
No 170
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=39.31 E-value=77 Score=33.92 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=46.5
Q ss_pred EeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcC
Q psy17090 3 SFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70 (373)
Q Consensus 3 ~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~ 70 (373)
++.++.+-+.=+||+-+.+++.+.++.|...+..++|+|.+|.||-... . ..+|....++-+.|.
T Consensus 436 ~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~Vf~~~~-~--~~~e~~~la~~~~g~ 500 (704)
T CHL00192 436 KLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGHVFNLDS-S--SIIEETELAGGIFGG 500 (704)
T ss_pred EEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeeeeEcCCC-c--cccccceEEEEEECC
Confidence 3445555566689999999999998877655558999999999995321 1 134566677777774
No 171
>PLN02757 sirohydrochlorine ferrochelatase
Probab=39.23 E-value=2.4e+02 Score=23.83 Aligned_cols=61 Identities=18% Similarity=0.085 Sum_probs=39.9
Q ss_pred ceEEEEEcCc---hhHHHHHHHHHHHHHc-CC-eEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 265 CDIYIVHVGK---EAELKAFVLSENLRTL-GL-KVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 265 ~~v~v~~~~~---~~~~~~~~la~~Lr~~-Gi-~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
..++++.-|. .......++++.|++. +. .|+..+-. ...+++.+.++.+.+.|++.++++-
T Consensus 14 ~~lllvgHGSrd~~a~~~~~~la~~l~~~~~~~~V~~aFle-~~~Psl~eal~~l~~~g~~~vvVvP 79 (154)
T PLN02757 14 DGVVIVDHGSRRKESNLMLEEFVAMYKQKTGHPIVEPAHME-LAEPSIKDAFGRCVEQGASRVIVSP 79 (154)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEe-cCCCCHHHHHHHHHHCCCCEEEEEE
Confidence 4566666553 3345667888889864 23 23333321 1128999999999999999988863
No 172
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=38.93 E-value=1.9e+02 Score=23.01 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 282 VLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 282 ~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
-++..|+.+|+.|...-.. .+.++..+.+.+.+...+++-.
T Consensus 18 ~~~~~l~~~G~~vi~lG~~----vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 18 VIARALRDAGFEVIYTGLR----QTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred HHHHHHHHCCCEEEECCCC----CCHHHHHHHHHHcCCCEEEEcc
Confidence 3445566667666544433 5566666666666666666654
No 173
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=38.48 E-value=1.2e+02 Score=28.97 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=39.8
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHH--HHHHHHHcCCCEEEEEccCc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKS--QMKRANASNANFAAIIGENE 329 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~--~~~~a~~~gi~~~vivg~~e 329 (373)
.|+.|+..| .....+++.++.|.++|+++++..-.. -..++. ..+.+ .+...+|++.++-
T Consensus 202 ~ditiia~G-~~v~~al~Aa~~L~~~Gi~~~VId~~~--ikPlD~~~i~~~~--~~t~~vv~vEE~~ 263 (327)
T CHL00144 202 NDITILTYS-RMRHHVLQAVKVLVEKGYDPEIIDLIS--LKPLDLGTISKSV--KKTHKVLIVEECM 263 (327)
T ss_pred CCEEEEEcc-HHHHHHHHHHHHHHhcCCCEEEEecCc--CCCCCHHHHHHHH--HhhCcEEEEECCC
Confidence 578888775 466788999999999999998875421 112222 23333 3457788887653
No 174
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=37.99 E-value=1.2e+02 Score=27.87 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=39.6
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCH-HHHHHHHHHcCCCE
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESF-KSQMKRANASNANF 321 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl-~~~~~~a~~~gi~~ 321 (373)
..|+|++-....-.+++-+|+.|+..|+.|.+..... ..... ..+.+.+++.|+++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~-~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQ-SSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCC-CChHHHHHHHHHHHHcCCCE
Confidence 4577776555667889999999999999999987421 00122 44567788888775
No 175
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=37.91 E-value=1.5e+02 Score=27.69 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 279 KAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 279 ~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
...++.+.|+++|+.+++.... ......+..+.+.+.+.+.+|++|.|
T Consensus 15 ~~~~~~~~l~~~g~~~~v~~t~--~~~~a~~~a~~~~~~~~d~vv~~GGD 62 (293)
T TIGR03702 15 DVREAVGDLRDEGIQLHVRVTW--EKGDAQRYVAEALALGVSTVIAGGGD 62 (293)
T ss_pred HHHHHHHHHHHCCCeEEEEEec--CCCCHHHHHHHHHHcCCCEEEEEcCC
Confidence 3445566777788776655432 00344555555556777777777765
No 176
>KOG4163|consensus
Probab=37.78 E-value=20 Score=35.43 Aligned_cols=68 Identities=25% Similarity=0.386 Sum_probs=47.9
Q ss_pred eEeecCCC----hHHHHHHHHHhcCCCCCCeeEEEeeceeecC--CCC-CCCCccee-eeEEEEEcCCCchhhHHHHHHH
Q psy17090 12 NLSLRPEG----TASVIRSVIENNLIYDGPKRLWYSGPMFRHE--RPQ-YGRYRQFY-QIGVEAIGFPGPDIDAELIIMC 83 (373)
Q Consensus 12 ~l~LRpD~----T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~--~~~-~gr~ref~-Q~g~eiig~~~~~~d~Evi~l~ 83 (373)
.+++||-. -+.++.++-+|+ ++|+|+=+--+|-|.| .|+ .-|.|||. |-|=-.+-.. .+|+-||++++
T Consensus 159 piaiRPTSETvmyp~yakWi~ShR---DLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat~-~eA~eEvlqiL 234 (551)
T KOG4163|consen 159 PIAIRPTSETVMYPYYAKWIQSHR---DLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATP-EEAEEEVLQIL 234 (551)
T ss_pred ceeeccCccceecHHHHHHHHhhc---cCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCCH-hHHHHHHHHHH
Confidence 58899953 367888876553 6899999999999986 344 36889985 8776555433 25777776554
No 177
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=37.13 E-value=24 Score=35.30 Aligned_cols=48 Identities=21% Similarity=0.515 Sum_probs=32.9
Q ss_pred EEEEEeCCCCCccceeccCc----cchhHHhhcC-----------------CCCCeeeeechHHHHHHHHHhh
Q psy17090 204 VFEWTTDKLGSQNSICGGGR----YDFLIKKFSN-----------------KFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 204 vFe~~~~~~g~~~~ia~GGR----YD~L~~~f~~-----------------~~~pavGfai~le~l~~~l~~~ 255 (373)
-|++|.++ ..|++|+. |+.|..++.. -..|+.||++|+|||+.++...
T Consensus 342 ~fdl~~~g----~Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~ 410 (428)
T TIGR00458 342 SFDLMYRD----LEISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGL 410 (428)
T ss_pred EEEEEeCC----eEEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCC
Confidence 78889875 36777763 3344444321 1357889999999999998664
No 178
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=36.90 E-value=2.9e+02 Score=25.59 Aligned_cols=80 Identities=10% Similarity=0.170 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCceEEEEEcCc--hhHHHHHHHHHHHHH-cCCeEEEEecc-CccccCHHHHHHHHHHcCCC
Q psy17090 245 IERLIELIKKININHNFSHQCDIYIVHVGK--EAELKAFVLSENLRT-LGLKVILNCVF-NNIHESFKSQMKRANASNAN 320 (373)
Q Consensus 245 le~l~~~l~~~~~~~~~~~~~~v~v~~~~~--~~~~~~~~la~~Lr~-~Gi~v~~~~~~-~~~~~sl~~~~~~a~~~gi~ 320 (373)
.+++++.+...... .++.+-+..++ ......+.++..|++ .|+.+.....+ +++...+...+..+...|+.
T Consensus 14 ~~~l~~~~~~l~~~-----~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~ 88 (272)
T TIGR00676 14 EENLWETVDRLSPL-----DPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIR 88 (272)
T ss_pred HHHHHHHHHHHhcC-----CCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCC
Confidence 46666665543221 13333333332 356677899999995 49998766553 22344678888899999999
Q ss_pred EEEEEccCc
Q psy17090 321 FAAIIGENE 329 (373)
Q Consensus 321 ~~vivg~~e 329 (373)
.++.+..+.
T Consensus 89 nvL~l~GD~ 97 (272)
T TIGR00676 89 HILALRGDP 97 (272)
T ss_pred EEEEeCCCC
Confidence 999887664
No 179
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=36.83 E-value=26 Score=35.31 Aligned_cols=21 Identities=48% Similarity=0.877 Sum_probs=17.9
Q ss_pred CCCeeeeechHHHHHHHHHhh
Q psy17090 235 FVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 235 ~~pavGfai~le~l~~~l~~~ 255 (373)
..|..||++|+|||+.++...
T Consensus 412 ~pP~gG~GiGidRL~m~l~g~ 432 (450)
T PRK03932 412 SVPHSGFGLGFERLVAYITGL 432 (450)
T ss_pred CCCCCcEeehHHHHHHHHhCC
Confidence 358889999999999998764
No 180
>PLN02221 asparaginyl-tRNA synthetase
Probab=36.61 E-value=27 Score=36.28 Aligned_cols=50 Identities=28% Similarity=0.555 Sum_probs=34.6
Q ss_pred eEEEEEeCCCCCccceeccC----ccchhHHhhc-----------------CCCCCeeeeechHHHHHHHHHhh
Q psy17090 203 TVFEWTTDKLGSQNSICGGG----RYDFLIKKFS-----------------NKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 203 ~vFe~~~~~~g~~~~ia~GG----RYD~L~~~f~-----------------~~~~pavGfai~le~l~~~l~~~ 255 (373)
--|++|.++. ..|++|+ ||+.|..... --..|..||++|+|||+.++...
T Consensus 484 ~~fDLl~~g~---~El~~g~~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~ 554 (572)
T PLN02221 484 AAMDVLVPKV---GELIGGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGI 554 (572)
T ss_pred EEEEEecCCc---eEECCHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCC
Confidence 3788888863 3666666 5565544331 01467889999999999998664
No 181
>PRK13054 lipid kinase; Reviewed
Probab=36.58 E-value=1.5e+02 Score=27.72 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 278 LKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 278 ~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
....++.+.|++.|+.+++.... ......+..+.+...+.+.+|++|.|
T Consensus 18 ~~~~~~~~~l~~~g~~~~v~~t~--~~~~a~~~a~~~~~~~~d~vvv~GGD 66 (300)
T PRK13054 18 EELREAVGLLREEGHTLHVRVTW--EKGDAARYVEEALALGVATVIAGGGD 66 (300)
T ss_pred HHHHHHHHHHHHcCCEEEEEEec--CCCcHHHHHHHHHHcCCCEEEEECCc
Confidence 34455666788888776654432 01345556666666777888888765
No 182
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=36.18 E-value=2.2e+02 Score=22.66 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=38.6
Q ss_pred EEEEEcCc---hhHHHHHHHHHHHHHc--CCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 267 IYIVHVGK---EAELKAFVLSENLRTL--GLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 267 v~v~~~~~---~~~~~~~~la~~Lr~~--Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
++++.-|. .......++++.|++. +..|...+-. ...+++.+.++.+.+.|++.++++-
T Consensus 4 lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~afle-~~~P~l~~~l~~l~~~g~~~v~vvP 67 (126)
T PRK00923 4 LLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVGFME-FNEPTIPEALKKLIGTGADKIIVVP 67 (126)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEE-cCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 34454443 2335667888888875 3345544311 0128999999999999999988863
No 183
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=36.09 E-value=27 Score=34.99 Aligned_cols=48 Identities=31% Similarity=0.617 Sum_probs=33.4
Q ss_pred EEEEEeCCCCCccceeccC----ccchhHHhhcC-----------------CCCCeeeeechHHHHHHHHHhh
Q psy17090 204 VFEWTTDKLGSQNSICGGG----RYDFLIKKFSN-----------------KFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 204 vFe~~~~~~g~~~~ia~GG----RYD~L~~~f~~-----------------~~~pavGfai~le~l~~~l~~~ 255 (373)
-|++|.++ ..|++|+ +|+.+..++.. -..|+.||++|+|||+.++...
T Consensus 351 ~fdl~~~g----~Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~ 419 (437)
T PRK05159 351 SFDLLFRG----LEITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGL 419 (437)
T ss_pred EEEEEECC----EEEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCC
Confidence 68888885 3677776 34455444421 1357889999999999998664
No 184
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=35.71 E-value=2.5e+02 Score=26.27 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHc-CCeEEEEecc-CccccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 275 EAELKAFVLSENLRTL-GLKVILNCVF-NNIHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 275 ~~~~~~~~la~~Lr~~-Gi~v~~~~~~-~~~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
......++++..|++. |+.+.....+ ++....+...+..+...|+..+++++.+.
T Consensus 42 ~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~ 98 (281)
T TIGR00677 42 TTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDP 98 (281)
T ss_pred cchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3566778999999966 9998776654 22334577788889999999999988764
No 185
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=35.65 E-value=1e+02 Score=28.45 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=40.1
Q ss_pred CCceEeecCCChHHHHHHH-HHh-cCCCCCCeeEEEeeceeecCCCCCC----CCcceeeeEEEEEcCCCchhhHHHHHH
Q psy17090 9 NGDNLSLRPEGTASVIRSV-IEN-NLIYDGPKRLWYSGPMFRHERPQYG----RYRQFYQIGVEAIGFPGPDIDAELIIM 82 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~-~~~-~~~~~~p~k~~y~g~vfR~~~~~~g----r~ref~Q~g~eiig~~~~~~d~Evi~l 82 (373)
.|-.+.-++|+-+.-.-+. ++- +..++.|.+.+|+.+..|......| |.-.++|.=+=+ .+++ ..+-.+
T Consensus 15 ~GC~i~qPyD~evGAGT~~P~Tflr~Lgpepw~vaYVqPsrRP~DGRYGeNPNRLq~y~QfQVil--KPsP---~niq~l 89 (284)
T PF02091_consen 15 QGCIILQPYDIEVGAGTFHPATFLRALGPEPWNVAYVQPSRRPTDGRYGENPNRLQHYYQFQVIL--KPSP---DNIQEL 89 (284)
T ss_dssp TT-EE----SS--SSGGGSHHHHTTTSSSS-EEEEEEEEEE-GGG--TTTSSS--SEEEEEEEEE--ES-----TTHHHH
T ss_pred CCCEEECCcccccccccCCHHHHHHhcCCCCccccccccCCCCCCCccCCCchHhhhhheeEEEE--cCCC---ccHHHH
Confidence 4667777777654322110 010 1124789999999999996543333 455778876633 4444 456778
Q ss_pred HHHHHHHCCC
Q psy17090 83 CSRLWKNLNL 92 (373)
Q Consensus 83 ~~~~l~~lg~ 92 (373)
-+++|+.+|+
T Consensus 90 YL~SL~~lGI 99 (284)
T PF02091_consen 90 YLESLEALGI 99 (284)
T ss_dssp HHHHHHHCT-
T ss_pred HHHHHHHhCC
Confidence 8999999998
No 186
>PLN02540 methylenetetrahydrofolate reductase
Probab=35.39 E-value=2.5e+02 Score=29.25 Aligned_cols=56 Identities=4% Similarity=0.088 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHc-CCeEEEEecc-CccccCHHHHHHHHHHcCCCEEEEEccCcc
Q psy17090 275 EAELKAFVLSENLRTL-GLKVILNCVF-NNIHESFKSQMKRANASNANFAAIIGENEI 330 (373)
Q Consensus 275 ~~~~~~~~la~~Lr~~-Gi~v~~~~~~-~~~~~sl~~~~~~a~~~gi~~~vivg~~e~ 330 (373)
......+++|..+++. |+.+.....+ ++....+...+..|...||.-++.+..+-.
T Consensus 41 st~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp 98 (565)
T PLN02540 41 STADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPP 98 (565)
T ss_pred CcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 4567789999999987 9998776654 224456888899999999999999987643
No 187
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=35.33 E-value=1.3e+02 Score=22.47 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHH
Q psy17090 282 VLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAEN 361 (373)
Q Consensus 282 ~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~ 361 (373)
.+.+.|+++|+.|.-.... .+..++.-+|+-|.+. +..-+-+..++ .|-..=.=.+.+|+++
T Consensus 12 ~v~~~L~~~GyeVv~l~~~-------------~~~~~~daiVvtG~~~---n~mg~~d~~~~--~pVInA~G~T~eEI~~ 73 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENE-------------QDLQNVDAIVVTGQDT---NMMGIQDTSTK--VPVINASGLTAEEIVQ 73 (80)
T ss_pred HHHHHHHHCCCEEEecCCc-------------cccCCcCEEEEECCCc---ccccccccccC--ceEEecCCCCHHHHHH
Confidence 5678899999999554443 1467999999998763 33323332222 1111112346778888
Q ss_pred HHHHHH
Q psy17090 362 YFYKKI 367 (373)
Q Consensus 362 ~l~~~~ 367 (373)
.+.+++
T Consensus 74 ~v~~rl 79 (80)
T PF03698_consen 74 EVEERL 79 (80)
T ss_pred HHHHhh
Confidence 877665
No 188
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=35.13 E-value=1.5e+02 Score=28.02 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=40.6
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCcccc-CHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHE-SFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~-sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
.|+.|+..| .....+++.|+.|.+.||++-+..-.. .++ .-...+++|++- ..+|.+-++.
T Consensus 193 ~D~tiiA~G-~mv~~al~AA~~L~~~GIsa~Vi~m~t-IKPiD~~~i~~~A~~t--~~IvT~EeHs 254 (312)
T COG3958 193 SDLTIIATG-VMVAEALEAAEILKKEGISAAVINMFT-IKPIDEQAILKAARET--GRIVTAEEHS 254 (312)
T ss_pred CceEEEecC-cchHHHHHHHHHHHhcCCCEEEEecCc-cCCCCHHHHHHHHhhc--CcEEEEecce
Confidence 567777654 466789999999999999998876431 111 223334555544 7888886654
No 189
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=34.95 E-value=2.4e+02 Score=23.06 Aligned_cols=71 Identities=10% Similarity=-0.025 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCCceEEEEE-cCchhHHHHHHHHHHHHHcCC-eEEEEeccCccccCHHHHHHHHHHcCCCE
Q psy17090 244 GIERLIELIKKININHNFSHQCDIYIVH-VGKEAELKAFVLSENLRTLGL-KVILNCVFNNIHESFKSQMKRANASNANF 321 (373)
Q Consensus 244 ~le~l~~~l~~~~~~~~~~~~~~v~v~~-~~~~~~~~~~~la~~Lr~~Gi-~v~~~~~~~~~~~sl~~~~~~a~~~gi~~ 321 (373)
..+.+++...+.+ .++++++ .........-++++.|+++|. .+.+...+ ..+.+..+...+.|+..
T Consensus 41 s~e~~v~aa~e~~--------adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG----~~~~~~~~~l~~~Gvd~ 108 (132)
T TIGR00640 41 TPEEIARQAVEAD--------VHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG----VIPPQDFDELKEMGVAE 108 (132)
T ss_pred CHHHHHHHHHHcC--------CCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC----CCChHhHHHHHHCCCCE
Confidence 3455555554433 3444333 333455566677777777765 33344443 23444556666677766
Q ss_pred EEEEc
Q psy17090 322 AAIIG 326 (373)
Q Consensus 322 ~vivg 326 (373)
++-.|
T Consensus 109 ~~~~g 113 (132)
T TIGR00640 109 IFGPG 113 (132)
T ss_pred EECCC
Confidence 65543
No 190
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=34.71 E-value=1.8e+02 Score=22.94 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=36.4
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEE
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAII 325 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~viv 325 (373)
+.|++|+....+.-.+.++.++.++++|.++...... .. .-+.|++.|++.+.+-
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~----~~---l~~~~~~~~~~~~~~p 97 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSG----GK---LLEMAREHGVPVIIIP 97 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCC----ch---HHHHHHHcCCcEEECC
Confidence 4566655444444556678888889999988766654 33 4446777777777664
No 191
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=34.63 E-value=55 Score=25.35 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHH-cCCCEEEEEccC
Q psy17090 282 VLSENLRTLGLKVILNCVFNNIHESFKSQMKRANA-SNANFAAIIGEN 328 (373)
Q Consensus 282 ~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~-~gi~~~vivg~~ 328 (373)
+++++|++.|+.+..+ . ...+-.....+-++ .+...+.++|.+
T Consensus 46 ~~~~~L~~~Gi~~~~~--~--i~ts~~~~~~~l~~~~~~~~v~vlG~~ 89 (101)
T PF13344_consen 46 EYAKKLKKLGIPVDED--E--IITSGMAAAEYLKEHKGGKKVYVLGSD 89 (101)
T ss_dssp HHHHHHHHTTTT--GG--G--EEEHHHHHHHHHHHHTTSSEEEEES-H
T ss_pred HHHHHHHhcCcCCCcC--E--EEChHHHHHHHHHhcCCCCEEEEEcCH
Confidence 5556666666664321 1 11222333333333 455566666544
No 192
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=34.36 E-value=3.2e+02 Score=23.92 Aligned_cols=57 Identities=11% Similarity=0.015 Sum_probs=38.5
Q ss_pred ceEEEEEcCchhHHH-HHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEE
Q psy17090 265 CDIYIVHVGKEAELK-AFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAII 325 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~-~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~viv 325 (373)
..|++.+...+.-.- ..-++..|+.+|+.|...-.+ .+.++..+.+.+.+.+.+.+-
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~----~p~~~l~~~~~~~~~d~v~lS 140 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD----VPPEEFVEAVKEHKPDILGLS 140 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC----CCHHHHHHHHHHcCCCEEEEe
Confidence 456666555433222 345567899999999443334 788889999998888876654
No 193
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=34.10 E-value=1.8e+02 Score=28.29 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=39.8
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHH-HHHHHHHcCCCEEEEEccCc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKS-QMKRANASNANFAAIIGENE 329 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~-~~~~a~~~gi~~~vivg~~e 329 (373)
.|+.|+..| .....+++.++.|+++|+++.+..-.. . .-+.+ .+..+ ..+.+.+|++.++-
T Consensus 234 ~di~Iia~G-s~~~~aleAa~~L~~~Gi~v~vI~~~~-l-~Pld~e~i~~~-~~~~~~IvvvEE~~ 295 (355)
T PTZ00182 234 KDVTIVGYG-SQVHVALKAAEELAKEGISCEVIDLRS-L-RPWDRETIVKS-VKKTGRCVIVHEAP 295 (355)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHHhCCCcEEEEEEee-C-CCCCHHHHHHH-HhcCCEEEEEEeCC
Confidence 578888776 456778999999999999998774320 1 22222 33332 34667888886654
No 194
>KOG4132|consensus
Probab=34.10 E-value=3.2e+02 Score=24.90 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEE--eccCccccCHHHHHHHHHHcC--C
Q psy17090 244 GIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILN--CVFNNIHESFKSQMKRANASN--A 319 (373)
Q Consensus 244 ~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~--~~~~~~~~sl~~~~~~a~~~g--i 319 (373)
+-+.|.+++.+.-. + .+... ++++.|+.. ..-+-.+|.++||+|+-. |.. ++++...+++.+|-+.. +
T Consensus 116 Na~~LaD~Ive~~~-~--~~alP-LLfpcGn~~---rdil~kkL~~~G~~Vds~~VY~T-~~hp~~~~~~~~alk~~~~~ 187 (260)
T KOG4132|consen 116 NAEILADLIVETFT-D--KRALP-LLFPCGNLR---RDILPKKLHDKGIRVDSCEVYET-REHPDGFKQFIHALKECGFI 187 (260)
T ss_pred cHHHHhHhhhhcCC-C--cccCc-eEEEcccch---hHHHHHHHHhCCceeeEEEEEee-eecccHHHHHHHHHHhcCCc
Confidence 66778888877411 1 11122 667777532 235667899999998654 322 35578888888887665 8
Q ss_pred CEEEEEccCcc
Q psy17090 320 NFAAIIGENEI 330 (373)
Q Consensus 320 ~~~vivg~~e~ 330 (373)
.|+++.++...
T Consensus 188 d~ivfFSPsgv 198 (260)
T KOG4132|consen 188 DWIVFFSPSGV 198 (260)
T ss_pred ceEEEECcchH
Confidence 99999988654
No 195
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=33.97 E-value=1.3e+02 Score=24.17 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=38.0
Q ss_pred HHHHHHHcCCe-EEEEeccCccccCHHHHHHHHHHcCCCEEEEEc--cCcccCCeEEEEECC
Q psy17090 283 LSENLRTLGLK-VILNCVFNNIHESFKSQMKRANASNANFAAIIG--ENEIINNTLIIKDLR 341 (373)
Q Consensus 283 la~~Lr~~Gi~-v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg--~~e~~~~~v~Vk~l~ 341 (373)
..+.++..|.+ +.+-.++. ..+.+..+.|+..|+++.++.+ .-|+..|+.+|--+.
T Consensus 40 ~~~~W~~~G~~KVvlk~~~~---~el~~l~~~a~~~~l~~~~v~DAG~Tei~pgs~Tvlaig 98 (115)
T TIGR00283 40 LRRKWLDEGQKKVVLKVNSL---EELLEIYHKAESLGLVTGLIRDAGHTQIPPGTITAVGIG 98 (115)
T ss_pred HHHHHHHcCCCEEEEEeCCH---HHHHHHHHHHHHcCCCEEEEEcCCcceeCCCCcEEEEEC
Confidence 34566677877 55544331 5677788889999999998865 355667877776553
No 196
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=33.88 E-value=2.7e+02 Score=23.62 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=39.2
Q ss_pred eEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHH---HHcCCCEEEE
Q psy17090 266 DIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRA---NASNANFAAI 324 (373)
Q Consensus 266 ~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a---~~~gi~~~vi 324 (373)
+|.|+-.+.+++....+.++.|.+.|+..+...-+ .++++++.+++| ++.|++.+|-
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvS--AHRTPe~m~~ya~~a~~~g~~viIA 63 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVS--AHRTPEKMFEYAEEAEERGVKVIIA 63 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEe--ccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 56666555667777778888899999988877654 457777666654 5666655443
No 197
>PLN02903 aminoacyl-tRNA ligase
Probab=33.59 E-value=47 Score=35.02 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=18.4
Q ss_pred CCCeeeeechHHHHHHHHHhhc
Q psy17090 235 FVPASGFAIGIERLIELIKKIN 256 (373)
Q Consensus 235 ~~pavGfai~le~l~~~l~~~~ 256 (373)
..|..|+|+|+|||+.++....
T Consensus 589 ~PphgG~alGldRlvmll~~~~ 610 (652)
T PLN02903 589 APPHGGIAYGLDRLVMLLAGAK 610 (652)
T ss_pred CCCCCceeecHHHHHHHHcCCC
Confidence 3578899999999999987653
No 198
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=33.24 E-value=2.6e+02 Score=22.63 Aligned_cols=50 Identities=10% Similarity=0.002 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHc-CCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 276 AELKAFVLSENLRTL-GLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~-Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
......++++.|+.. +..|...+-+ ...+++.+.++.+...|+..++++-
T Consensus 15 ~~~~~~~la~~l~~~~~~~v~~afle-~~~P~l~~~l~~l~~~G~~~ivVvP 65 (125)
T cd03415 15 FNEDMEEWAAYLERKLGVPVYLTYNE-YAEPNWRDLLNELLSEGYGHIIIAL 65 (125)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEee-cCCCCHHHHHHHHHHCCCCEEEEeh
Confidence 345567888888754 5566655421 1127999999999999999988873
No 199
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=33.24 E-value=2.1e+02 Score=24.10 Aligned_cols=53 Identities=25% Similarity=0.209 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 276 AELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
.+.-+..+.+.|.+.|++|.+.-+++ ...++.+....|+..+...+|-+--+.
T Consensus 27 ~~~ia~~l~~~L~~~G~~v~~~r~~~-~~~~l~~r~~~an~~~~d~~islH~na 79 (172)
T cd02696 27 NLAIALKLAKLLEAAGAKVVLTRDDD-TFVSLSERVAIANRAGADLFISIHANA 79 (172)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCC-CCCCHHHHHHHHHhcCCCEEEEEeecC
Confidence 35667788899999999998876541 125899999999999999999986543
No 200
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=32.73 E-value=35 Score=26.97 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=34.2
Q ss_pred chHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEecc
Q psy17090 243 IGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 243 i~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
+..+.+..++... +++++|+..|.....-.-++.+.|+++|+.++++..+
T Consensus 39 l~~~~l~~~~~~~--------~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 39 LDPEALLPLLAED--------RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCHHHHHHHHhhC--------CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 5566666555431 2678888877543333356778999999999998764
No 201
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.46 E-value=3e+02 Score=25.44 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=40.2
Q ss_pred echHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCE
Q psy17090 242 AIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANF 321 (373)
Q Consensus 242 ai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~ 321 (373)
+.|+|+.+....+.| .+-++++.-+ .++..++.+.+++.|+...+...+ .+..+.++.-.+..-.|
T Consensus 105 ~~G~e~F~~~~~~aG--------vdgviipDLP--~ee~~~~~~~~~~~gi~~I~lv~P----tT~~eri~~i~~~a~gF 170 (263)
T CHL00200 105 HYGINKFIKKISQAG--------VKGLIIPDLP--YEESDYLISVCNLYNIELILLIAP----TSSKSRIQKIARAAPGC 170 (263)
T ss_pred HhCHHHHHHHHHHcC--------CeEEEecCCC--HHHHHHHHHHHHHcCCCEEEEECC----CCCHHHHHHHHHhCCCc
Confidence 346677766666654 3334444322 345567777777777777777766 45555555544444445
Q ss_pred EEEEc
Q psy17090 322 AAIIG 326 (373)
Q Consensus 322 ~vivg 326 (373)
+-++.
T Consensus 171 IY~vS 175 (263)
T CHL00200 171 IYLVS 175 (263)
T ss_pred EEEEc
Confidence 44443
No 202
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=32.03 E-value=1.8e+02 Score=23.32 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=38.1
Q ss_pred HHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc--CcccCCeEEEEECC
Q psy17090 283 LSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE--NEIINNTLIIKDLR 341 (373)
Q Consensus 283 la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~--~e~~~~~v~Vk~l~ 341 (373)
..+.++..|.+..+.-.+ +-..+.+..+.|+..|+++.++.+. -|+..|+.++--+.
T Consensus 40 ~~~~W~~~G~~KiVl~~~--~~~el~~l~~~a~~~~l~~~~v~DAG~Tev~~gt~T~laig 98 (115)
T cd02430 40 LLRAWEREGQKKIVLKVN--SEEELLELKKKAKSLGLPTSLIQDAGRTQIAPGTITVLGIG 98 (115)
T ss_pred HHHHHHhcCCcEEEEecC--CHHHHHHHHHHHHHcCCCeEEEEeCCCcccCCCCceEEEeC
Confidence 445677788766553322 0146778888889999999999754 35667777776554
No 203
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=31.43 E-value=38 Score=35.00 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=34.9
Q ss_pred eEEEEEeCCCCCccceeccC----ccchhHHhhcC-----------------CCCCeeeeechHHHHHHHHHhh
Q psy17090 203 TVFEWTTDKLGSQNSICGGG----RYDFLIKKFSN-----------------KFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 203 ~vFe~~~~~~g~~~~ia~GG----RYD~L~~~f~~-----------------~~~pavGfai~le~l~~~l~~~ 255 (373)
--|++|.++ ..|++|+ +|+.|.+++.. -..|+-||++|+|||+.++...
T Consensus 463 ~~fDlf~~G----~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~ 532 (550)
T PTZ00401 463 NSYDMFIRG----EEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGL 532 (550)
T ss_pred EEEEEEeCC----EEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCC
Confidence 568888874 4788884 45566655531 1357889999999999998664
No 204
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=31.30 E-value=1.2e+02 Score=22.96 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHCCCCceEEEeCCCcChhh
Q psy17090 77 AELIIMCSRLWKNLNLKNICLELNSIGNFNE 107 (373)
Q Consensus 77 ~Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~ 107 (373)
.-+-.++.++|+.+|+++..|.+++.|-++.
T Consensus 42 ~~i~~vi~~~l~~~~i~~~~v~i~D~GAld~ 72 (87)
T PF06857_consen 42 DQIRAVIRETLEELGIEDAKVEINDKGALDC 72 (87)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCCCHH
Confidence 3455788999999999999999999997765
No 205
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=30.85 E-value=3.8e+02 Score=27.96 Aligned_cols=60 Identities=12% Similarity=-0.009 Sum_probs=45.5
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHH---HHHcCCCEEEEE
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR---ANASNANFAAII 325 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~---a~~~gi~~~viv 325 (373)
.+.|.|+..+.++...+.+.++.|...|+.+++...+ .++++++..++ |+..|++-+|.+
T Consensus 410 ~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~s--ahr~~~~~~~~~~~~~~~~~~v~i~~ 472 (577)
T PLN02948 410 TPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVS--AHRTPERMFSYARSAHSRGLQVIIAG 472 (577)
T ss_pred CCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEEC--CccCHHHHHHHHHHHHHCCCCEEEEE
Confidence 4568888777788888899999999999999888765 46777666555 566788844444
No 206
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=30.79 E-value=34 Score=27.04 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=25.6
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEecc
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
.++++|+..|.....-.-++.+.|+++|+.++++..+
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 4789999888654333457888999999999998764
No 207
>PRK13253 citrate lyase subunit gamma; Provisional
Probab=30.61 E-value=2.5e+02 Score=21.57 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHCCCCceEEEeCCCcChhh
Q psy17090 77 AELIIMCSRLWKNLNLKNICLELNSIGNFNE 107 (373)
Q Consensus 77 ~Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~ 107 (373)
.-+-.++.++|+++++++..|.+++.|-++.
T Consensus 43 ~~i~~vv~~~l~~~~v~~~~i~i~D~GAld~ 73 (92)
T PRK13253 43 DQIRAVILETLAKLGVENAQVKVDDKGALDC 73 (92)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCCHH
Confidence 4456888999999999999999999998765
No 208
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=30.08 E-value=2.2e+02 Score=28.85 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=40.2
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
.|+.|++.| .....+++.++.|.+.||++++..-....--..+...+.+ .+...+|++-++-
T Consensus 341 ~DvtIva~G-~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv--~kt~~vvtvEE~~ 402 (464)
T PRK11892 341 KDVTIVSFS-IGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESV--KKTNRLVTVEEGW 402 (464)
T ss_pred CCEEEEEcc-HHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHH--HhcCeEEEEeCCC
Confidence 478888776 4667899999999999999998854210001222233333 4556788887654
No 209
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=30.06 E-value=4.4e+02 Score=24.77 Aligned_cols=102 Identities=17% Similarity=0.078 Sum_probs=57.0
Q ss_pred EecCCCCCCCCccceEEEEE-eCCCCCccceeccCccchhHHhhcCCCCCee-------eeechHHHHHHHHHhhcCC--
Q psy17090 189 INTKLVRGMDYYNRTVFEWT-TDKLGSQNSICGGGRYDFLIKKFSNKFVPAS-------GFAIGIERLIELIKKININ-- 258 (373)
Q Consensus 189 ~D~~~~r~~~YYtG~vFe~~-~~~~g~~~~ia~GGRYD~L~~~f~~~~~pav-------Gfai~le~l~~~l~~~~~~-- 258 (373)
..|++-+|..-=..+||.+- .+++- |+.-+..+.|.+.|.. +..--++++.+++...-..
T Consensus 167 ~SFGfK~GiP~dAD~VfDvRfLpNP~----------y~~~Lr~lTG~D~~V~~yv~~~~~~~~f~~~~~~~l~~~lp~y~ 236 (284)
T PF03668_consen 167 QSFGFKYGIPPDADLVFDVRFLPNPY----------YVPELRPLTGLDKPVQDYVLSDPEAQEFLEKIEDLLDFLLPRYE 236 (284)
T ss_pred EEeccccCCCCCCCEEEEcCcCCCCC----------CChhhhhcCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777778999984 44432 3433444444322211 1223455554444321000
Q ss_pred CCCCCCceEEEEEcCch--hHHHHHHHHHHHHHcCCeEEEEecc
Q psy17090 259 HNFSHQCDIYIVHVGKE--AELKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 259 ~~~~~~~~v~v~~~~~~--~~~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
..-.+...|.|-+.|+. ..--|-++++.|++.|..|.+.+++
T Consensus 237 ~egk~~ltIaiGCTGG~HRSV~iae~La~~L~~~~~~v~v~HRd 280 (284)
T PF03668_consen 237 KEGKSYLTIAIGCTGGQHRSVAIAERLAERLREKGYTVVVRHRD 280 (284)
T ss_pred hcCCceEEEEEEcCCCcCcHHHHHHHHHHHHHhcCCcceEEcCC
Confidence 00012346777777753 3345668999999999999887765
No 210
>PLN03194 putative disease resistance protein; Provisional
Probab=29.96 E-value=2.7e+02 Score=24.47 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=34.0
Q ss_pred CCCceEEEEEcCchh-HHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHH
Q psy17090 262 SHQCDIYIVHVGKEA-ELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRA 314 (373)
Q Consensus 262 ~~~~~v~v~~~~~~~-~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a 314 (373)
...+||+|-.-|.+. ...+-.+.+.|+.+||+|-++...-....++...+..|
T Consensus 24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~A 77 (187)
T PLN03194 24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSA 77 (187)
T ss_pred CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHH
Confidence 456899887666654 34567899999999999988753200014554444444
No 211
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=29.64 E-value=3.8e+02 Score=24.65 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=27.6
Q ss_pred chHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEecc
Q psy17090 243 IGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 243 i~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
.|+++.+..+.+.| .+.++++.-+ .++..++.+.+++.|+...+...+
T Consensus 102 ~G~e~f~~~~~~aG--------vdgviipDlp--~ee~~~~~~~~~~~gl~~i~lv~P 149 (256)
T TIGR00262 102 KGVEEFYAKCKEVG--------VDGVLVADLP--LEESGDLVEAAKKHGVKPIFLVAP 149 (256)
T ss_pred hhHHHHHHHHHHcC--------CCEEEECCCC--hHHHHHHHHHHHHCCCcEEEEECC
Confidence 45666666666654 3334444322 244556667777777776666655
No 212
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=29.61 E-value=57 Score=25.58 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=18.3
Q ss_pred cCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 305 ESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 305 ~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
.+.++++.+|+++|++|.|.-..
T Consensus 56 ~skE~Ai~yaer~G~~Y~V~~p~ 78 (101)
T PF04800_consen 56 DSKEDAIAYAERNGWDYEVEEPK 78 (101)
T ss_dssp SSHHHHHHHHHHCT-EEEEE-ST
T ss_pred CCHHHHHHHHHHcCCeEEEeCCC
Confidence 47899999999999999887543
No 213
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=29.41 E-value=63 Score=22.54 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.7
Q ss_pred cCCeEEEEECC-CCCCCCCccceeecHHHHHH
Q psy17090 331 INNTLIIKDLR-NKYEDPTLKQISISFKDAEN 361 (373)
Q Consensus 331 ~~~~v~Vk~l~-~~~~~~~~~~~~v~~~el~~ 361 (373)
++++.+|+.++ .+ ++..|++.+|.+
T Consensus 33 ~~~tA~V~~l~~p~------~~~~Vpv~~L~E 58 (58)
T PF08141_consen 33 ENGTARVHPLDNPE------EEQEVPVNDLEE 58 (58)
T ss_pred CCCeEEEEECCCCC------cEEEEEHHHccC
Confidence 57999999994 55 889999998853
No 214
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=29.16 E-value=2.6e+02 Score=22.25 Aligned_cols=43 Identities=21% Similarity=0.090 Sum_probs=33.0
Q ss_pred HcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHHhh
Q psy17090 316 ASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIKN 370 (373)
Q Consensus 316 ~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~~~ 370 (373)
..+.|+++++... ++..+|-.+-.| .++.++++..|+..+.+|
T Consensus 74 ~~~~P~~~~l~~~---~~~~~vv~~i~G---------~~~~~~ll~~L~~~~~~~ 116 (116)
T cd02991 74 ERTYPFLAMIMLK---DNRMTIVGRLEG---------LIQPEDLINRLTFIMDAN 116 (116)
T ss_pred CCCCCEEEEEEec---CCceEEEEEEeC---------CCCHHHHHHHHHHHHhcC
Confidence 3478999999754 356777776666 789999999999887654
No 215
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=28.91 E-value=1.3e+02 Score=23.06 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHcC-CeEEEEeccCccccCHHHHHHHHHHcCCCEEEEE
Q psy17090 276 AELKAFVLSENLRTLG-LKVILNCVFNNIHESFKSQMKRANASNANFAAII 325 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~G-i~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~viv 325 (373)
.......+++.|++.+ ..|...+-. ....++.+.++.+...|+..++++
T Consensus 8 ~~~~~~~la~~l~~~~~~~v~~~fle-~~~P~l~~~l~~l~~~g~~~ivvv 57 (105)
T PF01903_consen 8 ANAELEDLADRLRERLPVPVEVAFLE-FAEPSLEEALERLVAQGARRIVVV 57 (105)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEEEESS-CCCSCCHHCCHHHHCCTCSEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEe-cCCCCHHHHHHHHHHcCCCeEEEE
Confidence 3455678888898864 466666521 122899999999999999998887
No 216
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=28.68 E-value=4.3e+02 Score=24.28 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=44.7
Q ss_pred ceEEEEEcCc--hhHHHHHHHHHHHHHc-CCeEEEEecc-CccccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 265 CDIYIVHVGK--EAELKAFVLSENLRTL-GLKVILNCVF-NNIHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 265 ~~v~v~~~~~--~~~~~~~~la~~Lr~~-Gi~v~~~~~~-~~~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
++.+.++.++ ........++..|++. |+.+.....+ ++....+...+..+...|+..+++++.+.
T Consensus 29 ~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~ 97 (274)
T cd00537 29 PDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDP 97 (274)
T ss_pred CCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCC
Confidence 4444444443 3556678888888877 4888666553 22335678888889999999999996553
No 217
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=28.61 E-value=2.9e+02 Score=22.54 Aligned_cols=61 Identities=21% Similarity=0.189 Sum_probs=38.4
Q ss_pred eEEEEEcCch--hHHHHHHHHHHHHHc-CCeEEEEeccC--ccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 266 DIYIVHVGKE--AELKAFVLSENLRTL-GLKVILNCVFN--NIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 266 ~v~v~~~~~~--~~~~~~~la~~Lr~~-Gi~v~~~~~~~--~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
.|+|++...+ -.....++|+.|++. |+.|.++.-+. ........-+... ...+.++|+|-.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~-~~~ad~Vliv~S 67 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQ-IREADKVLIVCS 67 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHH-HhcCCEEEEEec
Confidence 4777765432 335578999999999 99998884321 0112334334444 567778877755
No 218
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=28.17 E-value=45 Score=33.62 Aligned_cols=50 Identities=32% Similarity=0.603 Sum_probs=32.7
Q ss_pred eEEEEEeCCCCCccceeccC----ccchhHHhhcC-----------------CCCCeeeeechHHHHHHHHHhh
Q psy17090 203 TVFEWTTDKLGSQNSICGGG----RYDFLIKKFSN-----------------KFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 203 ~vFe~~~~~~g~~~~ia~GG----RYD~L~~~f~~-----------------~~~pavGfai~le~l~~~l~~~ 255 (373)
--|+.+.++.| .|++|+ +|+.|..++.. -..|.-||++|+|||+.++...
T Consensus 365 ~~fDL~~~g~g---Ei~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~ 435 (453)
T TIGR00457 365 AAMDLLAPGIG---EIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGL 435 (453)
T ss_pred eeeeeccCCce---EEeehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCC
Confidence 35777777532 566665 35555444310 1347889999999999998764
No 219
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.11 E-value=4.4e+02 Score=25.22 Aligned_cols=47 Identities=17% Similarity=0.039 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHH-HHHcCCCEEEEEc
Q psy17090 276 AELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR-ANASNANFAAIIG 326 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~-a~~~gi~~~vivg 326 (373)
..+...+.++..++.+..+.+-..+ -|.-+.-+. |-..+.|++.|..
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGG----GS~iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 62 TRAEIERLAEIARDNGADVVIGIGG----GKTLDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecC----chhhHHHHHHHHHcCCCEEEeCC
Confidence 4456677778888888888777776 333222222 3345888888754
No 220
>PLN02850 aspartate-tRNA ligase
Probab=27.98 E-value=44 Score=34.40 Aligned_cols=49 Identities=24% Similarity=0.439 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCCccceeccCc----cchhHHhhc-----------------CCCCCeeeeechHHHHHHHHHhh
Q psy17090 203 TVFEWTTDKLGSQNSICGGGR----YDFLIKKFS-----------------NKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 203 ~vFe~~~~~~g~~~~ia~GGR----YD~L~~~f~-----------------~~~~pavGfai~le~l~~~l~~~ 255 (373)
--|++|.++ ..|++|+. |+.|..++. --..|.-||++|+|||+.++...
T Consensus 443 ~~fDl~i~G----~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiGlERLvM~l~g~ 512 (530)
T PLN02850 443 NSFDVFIRG----EEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGL 512 (530)
T ss_pred EEEEEEeCC----EEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCC
Confidence 368889875 47888774 344443332 11357889999999999998664
No 221
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=27.59 E-value=2.7e+02 Score=24.56 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=21.2
Q ss_pred HHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 286 NLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 286 ~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
.+.+.|..+....+. -....+++++++|.+.|...++++|.
T Consensus 59 ~~~~~~~~~~~~p~~-KD~TD~e~Al~~~~~~~~~~i~i~Ga 99 (208)
T cd07995 59 YYKSKGVEIIHFPDE-KDFTDFEKALKLALERGADEIVILGA 99 (208)
T ss_pred HHHhcCCeEEECCCC-CCCCHHHHHHHHHHHcCCCEEEEEcc
Confidence 344445544443321 01245666666666666666666653
No 222
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=27.55 E-value=2.8e+02 Score=23.98 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeccCcc-------------ccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 276 AELKAFVLSENLRTLGLKVILNCVFNNI-------------HESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~Gi~v~~~~~~~~~-------------~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
.+.-+..+++.|.+.|+.|.+.-.++.. ..++.+....|+..++..+|-+=-+.
T Consensus 28 ~l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na 94 (189)
T TIGR02883 28 TLEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNA 94 (189)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCC
Confidence 3566788889999999999876543210 12688899999999999998886553
No 223
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=27.38 E-value=1.9e+02 Score=29.30 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=39.7
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCE
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANF 321 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~ 321 (373)
..|+|++...+.-.+++-+|+.|...|+.|.+.+............+..+...|++.
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 457777765667789999999999999999988743101122234566777778764
No 224
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=27.30 E-value=4.5e+02 Score=25.19 Aligned_cols=71 Identities=13% Similarity=0.036 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHH-HHHcCCCEEE
Q psy17090 245 IERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR-ANASNANFAA 323 (373)
Q Consensus 245 le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~-a~~~gi~~~v 323 (373)
.+++...+.+.+. ..++.++. ++.......+.++.+++.+..+.+-..+ -|.-+.-+. |...++|++.
T Consensus 38 ~~~v~~~l~~~~i------~~~~~~~~-~~p~~~~v~~~~~~~~~~~~d~IIavGG----Gs~~D~aK~ia~~~~~p~i~ 106 (349)
T cd08550 38 RPRFEAALAKSII------VVDVIVFG-GECSTEEVVKALCGAEEQEADVIIGVGG----GKTLDTAKAVADRLDKPIVI 106 (349)
T ss_pred HHHHHHHHHhcCC------eeEEEEcC-CCCCHHHHHHHHHHHHhcCCCEEEEecC----cHHHHHHHHHHHHcCCCEEE
Confidence 4556666655432 12334432 3334566778888888888888887776 343333322 3456889888
Q ss_pred EEc
Q psy17090 324 IIG 326 (373)
Q Consensus 324 ivg 326 (373)
|..
T Consensus 107 VPT 109 (349)
T cd08550 107 VPT 109 (349)
T ss_pred eCC
Confidence 864
No 225
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=27.21 E-value=50 Score=33.68 Aligned_cols=21 Identities=38% Similarity=0.797 Sum_probs=17.7
Q ss_pred CCCeeeeechHHHHHHHHHhh
Q psy17090 235 FVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 235 ~~pavGfai~le~l~~~l~~~ 255 (373)
-.|+-||++|+|||+.++...
T Consensus 455 ~PP~gG~GiGiDRLvm~ltg~ 475 (491)
T PRK00484 455 MPPTGGLGIGIDRLVMLLTDS 475 (491)
T ss_pred CCCCCeEEEeHHHHHHHHhCC
Confidence 347889999999999998764
No 226
>KOG0339|consensus
Probab=27.14 E-value=3e+02 Score=28.33 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=54.6
Q ss_pred echHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHH-HHcCCeEEEEeccCccccCHHHHHHHHHHcCCC
Q psy17090 242 AIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENL-RTLGLKVILNCVFNNIHESFKSQMKRANASNAN 320 (373)
Q Consensus 242 ai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~L-r~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~ 320 (373)
||-+--+++++.+....| -..|+-|+++|. .+........|+++ ...|+++.-.|.+ .+.-.|.+.-+ .|+.
T Consensus 276 Afi~pm~~himdq~eL~~-g~gPi~vilvPT-rela~Qi~~eaKkf~K~ygl~~v~~ygG----gsk~eQ~k~Lk-~g~E 348 (731)
T KOG0339|consen 276 AFIWPMIVHIMDQPELKP-GEGPIGVILVPT-RELASQIFSEAKKFGKAYGLRVVAVYGG----GSKWEQSKELK-EGAE 348 (731)
T ss_pred HHHHHHHHHhcchhhhcC-CCCCeEEEEecc-HHHHHHHHHHHHHhhhhccceEEEeecC----CcHHHHHHhhh-cCCe
Confidence 345555566655543322 245677777664 45556667788888 6779999999988 89999988776 8998
Q ss_pred EEEEEcc
Q psy17090 321 FAAIIGE 327 (373)
Q Consensus 321 ~~vivg~ 327 (373)
++|.--.
T Consensus 349 ivVaTPg 355 (731)
T KOG0339|consen 349 IVVATPG 355 (731)
T ss_pred EEEechH
Confidence 8886544
No 227
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=26.95 E-value=3e+02 Score=28.36 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 277 ELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 277 ~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
..++......|.+.|+.+.+-..- ..+.|++.|++.+++...
T Consensus 131 ~~e~~~~~~~l~~~G~~~viG~~~---------~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 131 EEDARSCVNDLRARGIGAVVGAGL---------ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHHCCCCEEECChH---------HHHHHHHcCCceEEEecH
Confidence 345667778888888877663322 467788888888887764
No 228
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=26.75 E-value=92 Score=24.61 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEecc
Q psy17090 243 IGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 243 i~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
+..+.+..++.. .++++|+..|....----++.+.|+++|+.++++..+
T Consensus 40 l~~e~l~~l~~~---------~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 40 LTAAHFEALLAL---------QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCHHHHHHHHhc---------CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 566666655532 2468888887543222356778899999999998764
No 229
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=26.66 E-value=2.8e+02 Score=20.91 Aligned_cols=49 Identities=18% Similarity=0.072 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcC--CeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 277 ELKAFVLSENLRTLG--LKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 277 ~~~~~~la~~Lr~~G--i~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
.....++++.|++.. ..|...+-. ....++.+.++.+...|++.++++-
T Consensus 15 ~~~~~~l~~~l~~~~~~~~v~~afle-~~~p~~~~~l~~l~~~g~~~v~vvP 65 (101)
T cd03416 15 AEALEALAERLRERLPGDEVELAFLE-LAEPSLAEALDELAAQGATRIVVVP 65 (101)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEE-cCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 345678888888763 445443311 0127899999999999999888873
No 230
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=26.55 E-value=2.5e+02 Score=22.31 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=34.0
Q ss_pred EEEEcC-chhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 268 YIVHVG-KEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 268 ~v~~~~-~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
+|+..+ .+...=.+.+++.|++.|..|.+...+ .+.+.. +..|+++.-+-+
T Consensus 2 li~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~-----~~~~~v---~~~Gl~~~~~~~ 53 (139)
T PF03033_consen 2 LIATGGTRGHVYPFLALARALRRRGHEVRLATPP-----DFRERV---EAAGLEFVPIPG 53 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETG-----GGHHHH---HHTT-EEEESSS
T ss_pred EEEEcCChhHHHHHHHHHHHHhccCCeEEEeecc-----cceecc---cccCceEEEecC
Confidence 445444 345556789999999999999877664 444444 778999887543
No 231
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=26.39 E-value=2.8e+02 Score=20.74 Aligned_cols=48 Identities=6% Similarity=0.016 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHc--CCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 278 LKAFVLSENLRTL--GLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 278 ~~~~~la~~Lr~~--Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
....++++.|++. +..+.+.+.. ...+++.+.++...+.|++.++++-
T Consensus 17 ~~~~~~~~~l~~~~~~~~v~~a~~~-~~~P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 17 KDIEAQAHNLAESLPDFPYYVGFQS-GLGPDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHHHHHHcCCCeEEEEe
Confidence 4455677777665 3445544332 0137899999999899999988874
No 232
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=26.35 E-value=7.3e+02 Score=25.56 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=46.5
Q ss_pred HHHhCCCc-EEEecCCCCCCCCccceEEEEEe--CCCCCccceeccCccc-hhHHhhcCCCCCeeeeechHHHHHHHHHh
Q psy17090 179 ILNYNNIS-YKINTKLVRGMDYYNRTVFEWTT--DKLGSQNSICGGGRYD-FLIKKFSNKFVPASGFAIGIERLIELIKK 254 (373)
Q Consensus 179 ~l~~~g~~-i~~D~~~~r~~~YYtG~vFe~~~--~~~g~~~~ia~GGRYD-~L~~~f~~~~~pavGfai~le~l~~~l~~ 254 (373)
+|..+|+. +.+.++..+...|+-|..-+++. +..+....|+.=|.++ .++..|+ -+.|.+.|.+++++|......
T Consensus 256 LL~~LGI~~i~f~pse~~~p~fHPGRSAeI~v~hp~~dGwkeIG~fGELHP~VLk~fD-I~~pV~aFELDLErL~~i~~~ 334 (529)
T PRK06253 256 LLSQFGFTKFKFRPDEKRSKYYTPDTQTEVYAYHPKLDGWVEVATFGIYSPVALAEYG-IDVPVMNLGLGVERLAMILYG 334 (529)
T ss_pred HHHHcCCCeEEEeecccCCCCcCCCeEEEEEEEeecCCCCEEEEEEEEECHHHHHHcC-CCCceEEEEEeHHHHHhhhcC
Confidence 34566775 56655311222256677777766 1111113688888888 4456676 567889999999999875533
No 233
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=26.17 E-value=2.8e+02 Score=23.22 Aligned_cols=18 Identities=0% Similarity=0.034 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCCEEEEE
Q psy17090 308 KSQMKRANASNANFAAII 325 (373)
Q Consensus 308 ~~~~~~a~~~gi~~~viv 325 (373)
.+.++.+++.|...+.++
T Consensus 81 ~~lve~lre~G~~~i~v~ 98 (143)
T COG2185 81 PGLVEALREAGVEDILVV 98 (143)
T ss_pred HHHHHHHHHhCCcceEEe
Confidence 455666777777777733
No 234
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=26.07 E-value=2.8e+02 Score=21.52 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=8.1
Q ss_pred chHHHHHHHHHhhc
Q psy17090 243 IGIERLIELIKKIN 256 (373)
Q Consensus 243 i~le~l~~~l~~~~ 256 (373)
+++.-+...+++.|
T Consensus 15 lGl~~la~~l~~~G 28 (121)
T PF02310_consen 15 LGLLYLAAYLRKAG 28 (121)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 45666666665544
No 235
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=25.84 E-value=3.9e+02 Score=24.53 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=42.7
Q ss_pred HHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHH
Q psy17090 285 ENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFY 364 (373)
Q Consensus 285 ~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~ 364 (373)
+.++..|+.+.+.-+++. ....++++.|++.||+-++|=.+.. ..+ ....-+++|+++++.
T Consensus 184 aL~~~~~i~~lVtK~SG~--~g~~eKi~AA~~lgi~vivI~RP~~-~~~----------------~~~~~~~~e~~~~l~ 244 (248)
T PRK08057 184 ALLRQHRIDVVVTKNSGG--AGTEAKLEAARELGIPVVMIARPAL-PYA----------------DREFEDVAELVAWLR 244 (248)
T ss_pred HHHHHcCCCEEEEcCCCc--hhhHHHHHHHHHcCCeEEEEeCCCC-CCC----------------CcccCCHHHHHHHHH
Confidence 356778999877765420 1478889999999999998876642 001 122346788888887
Q ss_pred HHH
Q psy17090 365 KKI 367 (373)
Q Consensus 365 ~~~ 367 (373)
+.+
T Consensus 245 ~~~ 247 (248)
T PRK08057 245 HLL 247 (248)
T ss_pred Hhh
Confidence 643
No 236
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=25.62 E-value=1.2e+02 Score=29.01 Aligned_cols=60 Identities=22% Similarity=0.158 Sum_probs=37.1
Q ss_pred eeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcC--ch-hHHHHHHHHHHHHHcCCeEEEEecc
Q psy17090 238 ASGFAIGIERLIELIKKININHNFSHQCDIYIVHVG--KE-AELKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 238 avGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~--~~-~~~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
.-|..+.-+.+-..+...... ....|+.|++-+ +. ......++++.++++|.+|.++.++
T Consensus 106 ~~Gp~is~~~~~~~l~~~~~~---l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 106 FPGPEISEAELEQFLEQLKAL---LESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHh---cccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh
Confidence 445556655555555443221 234677666542 12 3445568899999999999998775
No 237
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=25.51 E-value=3.3e+02 Score=28.16 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 278 LKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 278 ~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
.++......|.+.|+.+.+-..- ..+.|.+.|.+.+.+...
T Consensus 142 ~e~~~~v~~lk~~G~~~vvG~~~---------~~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 142 EDARGQINELKANGIEAVVGAGL---------ITDLAEEAGMTGIFIYSA 182 (538)
T ss_pred HHHHHHHHHHHHCCCCEEEcCch---------HHHHHHHhCCceEEecCH
Confidence 34556666677777766553322 345666667776666543
No 238
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=25.12 E-value=3.1e+02 Score=25.81 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 276 AELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
.+.-+.++.+.|.+.|+.|.+.-+++ ...++.+..+.|++.+...+|-|=-+.
T Consensus 84 ~L~IA~~l~~~L~~~G~~V~lTR~~D-~~vsL~~R~~~An~~~ADlFISIH~Ns 136 (287)
T PRK10319 84 VLAIAKNVRSILRNHGIDARLTRSGD-TFIPLYDRVEIAHKHGADLFMSIHADG 136 (287)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCCCC-CCCCHHHHHHHHHhcCCCEEEEecCCC
Confidence 35667788899999999997775431 236899999999999999999987654
No 239
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=25.10 E-value=1.1e+02 Score=21.47 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.3
Q ss_pred cCCeEEEEECCC-CCCCCCccceeecHHHHHH
Q psy17090 331 INNTLIIKDLRN-KYEDPTLKQISISFKDAEN 361 (373)
Q Consensus 331 ~~~~v~Vk~l~~-~~~~~~~~~~~v~~~el~~ 361 (373)
.+++.+|+.++. + ++..|++.+|.+
T Consensus 33 ~~~tA~I~~l~~p~------~~~~Vpv~~L~E 58 (59)
T PRK03174 33 QNGTARIHPLDNPN------QEQSVPLASLKE 58 (59)
T ss_pred CCCeEEEEECCCCC------cEEEEEHHHhcc
Confidence 579999999975 5 889999999875
No 240
>PLN02502 lysyl-tRNA synthetase
Probab=25.07 E-value=42 Score=34.75 Aligned_cols=20 Identities=35% Similarity=0.816 Sum_probs=17.3
Q ss_pred CCeeeeechHHHHHHHHHhh
Q psy17090 236 VPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 236 ~pavGfai~le~l~~~l~~~ 255 (373)
.|+-||+||+|||+.++...
T Consensus 518 PP~gG~GiGiDRLvMlltg~ 537 (553)
T PLN02502 518 PPTGGWGLGIDRLVMLLTDS 537 (553)
T ss_pred CCCceEEehHHHHHHHHcCC
Confidence 57889999999999998764
No 241
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=24.97 E-value=1.3e+02 Score=27.61 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=49.4
Q ss_pred CCceEeecCCChHHH-----HHHHHHhcCCCCCCeeEEEeeceeecCCCCCC----CCcceeeeEEEEEcCCCchhhHHH
Q psy17090 9 NGDNLSLRPEGTASV-----IRSVIENNLIYDGPKRLWYSGPMFRHERPQYG----RYRQFYQIGVEAIGFPGPDIDAEL 79 (373)
Q Consensus 9 ~G~~l~LRpD~T~~i-----aR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~g----r~ref~Q~g~eiig~~~~~~d~Ev 79 (373)
.|-.+.-++|+-+.- +-++.. .++.|.+.+|+.|..|......| |...++|.-+ |=.+++ ..+
T Consensus 16 ~GC~i~qPyD~EvGAGT~hPaTflr~---Lgpepw~vAYVqPsrRP~DGRYGeNPNRLq~y~QfQV--iiKPsP---~ni 87 (279)
T cd00733 16 QGCLIIQPYDMEVGAGTFHPATFLRA---LGPEPWNVAYVEPSRRPTDGRYGENPNRLQHYYQFQV--IIKPSP---DNI 87 (279)
T ss_pred CCCEEEcCcccccccccCCHHHHHHh---cCCCcceeccccCCCCCCCCCcCCCchhhhhheeeEE--EECCCC---ccH
Confidence 466777777765331 111111 23689999999999996443333 4456778665 334554 446
Q ss_pred HHHHHHHHHHCCCC
Q psy17090 80 IIMCSRLWKNLNLK 93 (373)
Q Consensus 80 i~l~~~~l~~lg~~ 93 (373)
-.+-+++|+.+|++
T Consensus 88 QelYL~SL~~lGid 101 (279)
T cd00733 88 QELYLESLEALGIN 101 (279)
T ss_pred HHHHHHHHHHhCCC
Confidence 67889999999984
No 242
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=24.90 E-value=3.7e+02 Score=22.21 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEE
Q psy17090 245 IERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAI 324 (373)
Q Consensus 245 le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vi 324 (373)
...++++++..+.. ....+|.|+.-+. ..+..++..|.+.|..|....... .++.+..+.|+ .+|.
T Consensus 12 ~~a~~~ll~~~~~~---~~gk~v~VvGrs~---~vG~pla~lL~~~gatV~~~~~~t---~~l~~~v~~AD-----IVvs 77 (140)
T cd05212 12 AKAVKELLNKEGVR---LDGKKVLVVGRSG---IVGAPLQCLLQRDGATVYSCDWKT---IQLQSKVHDAD-----VVVV 77 (140)
T ss_pred HHHHHHHHHHcCCC---CCCCEEEEECCCc---hHHHHHHHHHHHCCCEEEEeCCCC---cCHHHHHhhCC-----EEEE
Confidence 45667777776642 2346777765432 334578888999999998887542 46666666553 3332
Q ss_pred -------EccCcccCCeEEEEECCCC
Q psy17090 325 -------IGENEIINNTLIIKDLRNK 343 (373)
Q Consensus 325 -------vg~~e~~~~~v~Vk~l~~~ 343 (373)
++.+-++.|.+.+ |....
T Consensus 78 Atg~~~~i~~~~ikpGa~Vi-dvg~~ 102 (140)
T cd05212 78 GSPKPEKVPTEWIKPGATVI-NCSPT 102 (140)
T ss_pred ecCCCCccCHHHcCCCCEEE-EcCCC
Confidence 3344456676655 55444
No 243
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=24.89 E-value=4.8e+02 Score=22.95 Aligned_cols=61 Identities=18% Similarity=0.071 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECC
Q psy17090 278 LKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLR 341 (373)
Q Consensus 278 ~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~ 341 (373)
....+.|+.|..----+.....+ ..++.+....|...|...+++|+++--..+.+++.++.
T Consensus 14 ~Rtr~Fak~L~~~lp~~~~~~rg---~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~ 74 (191)
T COG2136 14 RRTRSFAKDLSRVLPNAYFLRRG---KKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLE 74 (191)
T ss_pred HHHHHHHHHHHHhCCcceEEecC---ccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEec
Confidence 34567788887653333333443 28899999999999999999999886677899999985
No 244
>COG4038 Predicted membrane protein [Function unknown]
Probab=24.89 E-value=38 Score=24.70 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=23.6
Q ss_pred cceeccCccchhHHhhcCCCCCeeeeech
Q psy17090 216 NSICGGGRYDFLIKKFSNKFVPASGFAIG 244 (373)
Q Consensus 216 ~~ia~GGRYD~L~~~f~~~~~pavGfai~ 244 (373)
..+++-||-|-.++.++ ...|+||+|+-
T Consensus 21 ~~~~gp~~~dpiv~~LN-~EiPtvGVSLI 48 (87)
T COG4038 21 GAAIGPARSDPVVKSLN-LELPTVGVSLI 48 (87)
T ss_pred HhhcCCcccCcHHHHhc-cccccceeeeh
Confidence 47788899999999886 68999998863
No 245
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.78 E-value=1.5e+02 Score=21.28 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 277 ELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 277 ~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
-.+|++.-+.|+++|+++.+...+ +.+. .||...+-+..
T Consensus 11 t~~a~~~ek~lk~~gi~~~liP~P----~~i~--------~~CG~al~~~~ 49 (73)
T PF11823_consen 11 THDAMKAEKLLKKNGIPVRLIPTP----REIS--------AGCGLALRFEP 49 (73)
T ss_pred HHHHHHHHHHHHHCCCcEEEeCCC----hhcc--------CCCCEEEEECh
Confidence 457788889999999999998876 4442 56777777655
No 246
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=24.77 E-value=1.1e+02 Score=21.54 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=21.5
Q ss_pred cCCeEEEEECCCCCCCCCccceeecHHHHHH
Q psy17090 331 INNTLIIKDLRNKYEDPTLKQISISFKDAEN 361 (373)
Q Consensus 331 ~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~ 361 (373)
++++.+|+.+.+.. ++.+|++.+|.+
T Consensus 33 ~~~tA~V~~~~~p~-----~e~~Vpv~~L~E 58 (59)
T PRK01625 33 QSGVAQVYDVSNPG-----ESVHVDVTALEE 58 (59)
T ss_pred CCCeEEEEecCCCC-----cEEEEEHHHccc
Confidence 57899999998742 889999999865
No 247
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=24.71 E-value=2.8e+02 Score=25.34 Aligned_cols=69 Identities=14% Similarity=0.072 Sum_probs=35.5
Q ss_pred echHHHHHHHHHhhcCCCCCCCCceE-EEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCC
Q psy17090 242 AIGIERLIELIKKININHNFSHQCDI-YIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNAN 320 (373)
Q Consensus 242 ai~le~l~~~l~~~~~~~~~~~~~~v-~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~ 320 (373)
++.+|.|++++...-.. ..+| .+-+.+++......+=.+.|++.||..++... +......|...|+.
T Consensus 58 ~~tLeeIi~~m~~a~~~-----Gk~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPG-------Vss~~AAAA~L~~E 125 (254)
T COG2875 58 SLTLEEIIDLMVDAVRE-----GKDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPG-------VSSFAAAAAALGIE 125 (254)
T ss_pred cCCHHHHHHHHHHHHHc-----CCeEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCC-------chHHHHHHHHhCce
Confidence 35666666666543210 1222 23333344555555566667777776666543 23345555556655
Q ss_pred EE
Q psy17090 321 FA 322 (373)
Q Consensus 321 ~~ 322 (373)
..
T Consensus 126 LT 127 (254)
T COG2875 126 LT 127 (254)
T ss_pred ee
Confidence 43
No 248
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=24.60 E-value=87 Score=21.86 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.7
Q ss_pred cCCeEEEEECCC-CCCCCCccceeecHHHHH
Q psy17090 331 INNTLIIKDLRN-KYEDPTLKQISISFKDAE 360 (373)
Q Consensus 331 ~~~~v~Vk~l~~-~~~~~~~~~~~v~~~el~ 360 (373)
++++.+|+.+.. + ++..|++.+|.
T Consensus 33 ~~~tA~V~~l~~p~------~~~~Vpv~~L~ 57 (58)
T TIGR02861 33 QSGTARVYSLDNPG------KEQDVPVNDLE 57 (58)
T ss_pred CCCeEEEEECCCCC------cEEEEEHHHcc
Confidence 579999999995 6 89999998875
No 249
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=24.56 E-value=63 Score=25.87 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=27.5
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEecc
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
.++++|+..|.....-.-++.+.|+++|+.++++..+
T Consensus 54 ~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 54 RPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred CCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 4678888887654333346678899999999998764
No 250
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=24.55 E-value=3.1e+02 Score=26.25 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=37.8
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHH-HHHHHHHcCCCEEEEEccCc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKS-QMKRANASNANFAAIIGENE 329 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~-~~~~a~~~gi~~~vivg~~e 329 (373)
.|+.|++.| .....+++.++.|.+.|+++.+..-.. . .-+.. .+..+ ..+.+.+|++-++-
T Consensus 202 ~di~iva~G-~~~~~a~eAa~~L~~~Gi~v~vi~~~~-l-~Pld~~~i~~~-~~~~~~vv~vEe~~ 263 (327)
T PRK09212 202 SDVTIVTFS-IQVKLALEAAELLEKEGISVEVIDLRT-L-RPLDTETIIES-VKKTNRLVVVEEGW 263 (327)
T ss_pred CCEEEEEcc-HHHHHHHHHHHHHHhcCCcEEEEEEec-C-CCCCHHHHHHH-HHhCCeEEEEcCCC
Confidence 577888776 455678888899999999988764320 0 11222 22222 23567788886654
No 251
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=24.44 E-value=1.3e+02 Score=28.21 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=36.5
Q ss_pred ceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCC
Q psy17090 11 DNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~ 72 (373)
..+-|.+-=-.+.-|.+|.. .-+.|++|.|||++.-+.-+.-||++.--.=+|.+-
T Consensus 69 ~~l~L~TSPEy~mKrLLAag------~~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~ 124 (322)
T COG2269 69 KPLWLHTSPEYHMKRLLAAG------SGPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDY 124 (322)
T ss_pred ceeeeecCcHHHHHHHHHcc------CCcchhhhHHHhcccccccCCCceeEeeeeccCCcH
Confidence 34455544445566766643 347899999999876333344599998777777653
No 252
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=24.20 E-value=2.3e+02 Score=29.28 Aligned_cols=56 Identities=9% Similarity=0.129 Sum_probs=40.0
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCH-HHHHHHHHHcCCCE
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESF-KSQMKRANASNANF 321 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl-~~~~~~a~~~gi~~ 321 (373)
..|+|++..++.-.+++-+|+.|...|+.|.+.+... ..... ......++..|+++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~-~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKR-TAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCC-CCcHHHHHHHHHHHHcCCCe
Confidence 3588877666677899999999999999999987431 01111 22567788888875
No 253
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=24.06 E-value=3.7e+02 Score=27.27 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 282 VLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 282 ~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
++...|..+|+.+++..... .....+..+.+...+.+.+|++|.|.
T Consensus 134 ~v~~~L~~~gi~~~v~~T~~--~ghA~~la~~~~~~~~D~VV~vGGDG 179 (481)
T PLN02958 134 VVKPLLEDADIQLTIQETKY--QLHAKEVVRTMDLSKYDGIVCVSGDG 179 (481)
T ss_pred HHHHHHHHcCCeEEEEeccC--ccHHHHHHHHhhhcCCCEEEEEcCCC
Confidence 46668999999988776530 02233344445567889999999864
No 254
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.02 E-value=4.8e+02 Score=24.96 Aligned_cols=47 Identities=11% Similarity=-0.089 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHH-HHHcCCCEEEEEc
Q psy17090 276 AELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR-ANASNANFAAIIG 326 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~-a~~~gi~~~vivg 326 (373)
......+.++..++.+..+.+...+ -|.-+.-+. |-..++|++.|..
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iiavGG----Gs~~D~aK~ia~~~~~p~i~VPT 110 (345)
T cd08171 63 TYENVERLKKNPAVQEADMIFAVGG----GKAIDTVKVLADKLGKPVFTFPT 110 (345)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCC----cHHHHHHHHHHHHcCCCEEEecC
Confidence 4555566667777777777777765 333333332 3335778777753
No 255
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=23.98 E-value=4.4e+02 Score=24.29 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=42.9
Q ss_pred eeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcC
Q psy17090 239 SGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASN 318 (373)
Q Consensus 239 vGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~g 318 (373)
.|+|-.+.+.+....+.+. .++|+|+-..+ ..+...+|+.|.+.|+.|.+..+. ++...++. .
T Consensus 114 ~~~S~~v~~~l~~a~~~~~------~~~V~v~es~P--~~eG~~~a~~L~~~gi~v~~i~d~-----~~~~~m~~----~ 176 (282)
T PF01008_consen 114 HGYSSTVERFLLSAKKKGK------KFRVIVLESRP--YNEGRLMAKELAEAGIPVTLIPDS-----AVGYVMPR----D 176 (282)
T ss_dssp ES--SHHHHHHHHHHHTTE------EEEEEEE--TT--TTHHHTHHHHHHHTT-EEEEE-GG-----GHHHHHHC----T
T ss_pred eCCchHHHHHHHHHHHcCC------eEEEEEccCCc--chhhhhHHHHhhhcceeEEEEech-----HHHHHHHH----h
Confidence 3455556666655555442 36676653323 445578999999999999888774 55555543 3
Q ss_pred CCEEEEEccCc-ccCCeE
Q psy17090 319 ANFAAIIGENE-IINNTL 335 (373)
Q Consensus 319 i~~~vivg~~e-~~~~~v 335 (373)
++.+ ++|.+- .++|.|
T Consensus 177 vd~V-liGad~v~~nG~v 193 (282)
T PF01008_consen 177 VDKV-LIGADAVLANGGV 193 (282)
T ss_dssp ESEE-EEE-SEEETTS-E
T ss_pred CCee-EEeeeEEecCCCE
Confidence 5554 444433 345543
No 256
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.96 E-value=4.9e+02 Score=22.72 Aligned_cols=57 Identities=9% Similarity=-0.028 Sum_probs=39.2
Q ss_pred ceEEEEEcCchhHHHH-HHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEE
Q psy17090 265 CDIYIVHVGKEAELKA-FVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAII 325 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~-~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~viv 325 (373)
..|++.+..++.-.-. .-++..|+.+|+.|...=.+ .+.++..+.+++.+.+.+.+-
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~----vp~e~~v~~~~~~~pd~v~lS 142 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD----VPIDTVVEKVKKEKPLMLTGS 142 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC----CCHHHHHHHHHHcCCCEEEEc
Confidence 4566655554433322 45567889999999655444 788889999988888877664
No 257
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.83 E-value=5.6e+02 Score=23.58 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEecc
Q psy17090 278 LKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 278 ~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
+++.++.+.+++.|+.......+
T Consensus 129 ee~~~~~~~~~~~gl~~I~lvap 151 (258)
T PRK13111 129 EEAEELRAAAKKHGLDLIFLVAP 151 (258)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCC
Confidence 34445555556666655554544
No 258
>PRK10494 hypothetical protein; Provisional
Probab=23.70 E-value=2.2e+02 Score=26.31 Aligned_cols=77 Identities=16% Similarity=0.048 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCceEEEEEcCc---hhHHHHHHHHHHHHHcCCeEE-EEeccCccccCHHHHHHHHHHcCCC
Q psy17090 245 IERLIELIKKININHNFSHQCDIYIVHVGK---EAELKAFVLSENLRTLGLKVI-LNCVFNNIHESFKSQMKRANASNAN 320 (373)
Q Consensus 245 le~l~~~l~~~~~~~~~~~~~~v~v~~~~~---~~~~~~~~la~~Lr~~Gi~v~-~~~~~~~~~~sl~~~~~~a~~~gi~ 320 (373)
.+|+...+.-....+ .+ .+|++.+. ....+|.-+++.|.+.|+..+ +..++ .+..+.+.+..-++..+.+
T Consensus 106 ~~Rl~~a~~L~r~~~----~~-~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~-~s~nT~eNa~~~~~~~~~~ 179 (259)
T PRK10494 106 LPRLTEGIRLWRANP----GA-KLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLD-LPKDTEEEAAAVKQAIGDA 179 (259)
T ss_pred HHHHHHHHHHHHhCC----CC-EEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCC-CCCCHHHHHHHHHHHhCCC
Confidence 588877764433211 12 24444432 124567777788888888874 22221 2334556666666666776
Q ss_pred EEEEEcc
Q psy17090 321 FAAIIGE 327 (373)
Q Consensus 321 ~~vivg~ 327 (373)
.+++|.+
T Consensus 180 ~iiLVTs 186 (259)
T PRK10494 180 PFLLVTS 186 (259)
T ss_pred CEEEECC
Confidence 6666664
No 259
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=23.66 E-value=1e+02 Score=34.84 Aligned_cols=20 Identities=30% Similarity=0.733 Sum_probs=17.0
Q ss_pred CCeeeeechHHHHHHHHHhh
Q psy17090 236 VPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 236 ~pavGfai~le~l~~~l~~~ 255 (373)
.|.-||+||+|||+.++...
T Consensus 1060 PP~gG~GiGiDRLvM~ltg~ 1079 (1094)
T PRK02983 1060 PPTGGLGMGVDRLVMLLTGR 1079 (1094)
T ss_pred CCCCeEEeeHHHHHHHHhCC
Confidence 46779999999999998764
No 260
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=23.57 E-value=3.4e+02 Score=26.30 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=42.7
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
..++.|++.|. ....+.+.++.|++.|+++.+..-. ..++-..+.+..+ ..+++.++++..+
T Consensus 246 dad~~iva~Gs-~~~~a~eA~~~L~~~Gi~v~vi~~~-~l~Pfp~~~i~~~-l~~~k~VivvE~n 307 (352)
T PRK07119 246 DAELVLVAYGT-SARIAKSAVDMAREEGIKVGLFRPI-TLWPFPEKALEEL-ADKGKGFLSVEMS 307 (352)
T ss_pred CCCEEEEEcCc-cHHHHHHHHHHHHHcCCeEEEEeec-eecCCCHHHHHHH-HhCCCEEEEEeCC
Confidence 35788887764 4567889999999999999877421 1123334456554 5588999998765
No 261
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=23.44 E-value=3.7e+02 Score=24.78 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=43.1
Q ss_pred HHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHH
Q psy17090 285 ENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFY 364 (373)
Q Consensus 285 ~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~ 364 (373)
+.++..|+.+.+.-+++ ..-...++++.|++.||+.++|=.+.. ..+ ....-+++|++.++.
T Consensus 191 al~~~~~i~~lVtK~SG-~~Gg~~eKi~AA~~lgi~vivI~RP~~-~~~----------------~~~~~~~~el~~~l~ 252 (256)
T TIGR00715 191 ALLREYRIDAVVTKASG-EQGGELEKVKAAEALGINVIRIARPQT-IPG----------------VAIFDDISQLNQFVA 252 (256)
T ss_pred HHHHHcCCCEEEEcCCC-CccchHHHHHHHHHcCCcEEEEeCCCC-CCC----------------CccCCCHHHHHHHHH
Confidence 45777899997775531 001467889999999999999887642 101 112235788888887
Q ss_pred HHH
Q psy17090 365 KKI 367 (373)
Q Consensus 365 ~~~ 367 (373)
+.+
T Consensus 253 ~~~ 255 (256)
T TIGR00715 253 RLL 255 (256)
T ss_pred Hhc
Confidence 643
No 262
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=23.36 E-value=1.6e+02 Score=27.34 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=49.7
Q ss_pred CCceEeecCCChHHH-----HHHHHHhcCCCCCCeeEEEeeceeecCCCCCC----CCcceeeeEEEEEcCCCchhhHHH
Q psy17090 9 NGDNLSLRPEGTASV-----IRSVIENNLIYDGPKRLWYSGPMFRHERPQYG----RYRQFYQIGVEAIGFPGPDIDAEL 79 (373)
Q Consensus 9 ~G~~l~LRpD~T~~i-----aR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~g----r~ref~Q~g~eiig~~~~~~d~Ev 79 (373)
.|-.+.-++|+-+.- +-++.. .++.|.+.+|+.|..|......| |...++|.-+ |=.+++ ..+
T Consensus 17 ~GC~i~QPyD~EvGAGT~hPaTflra---lgpepw~vAYVqPsRRP~DGRYGeNPNRLq~yyQfQV--ilKPsP---~ni 88 (293)
T TIGR00388 17 QGCLIVQPYDMEKGAGTMHPMTFLRS---LGPEPWAVAYVEPSRRPTDGRYGENPNRLQHYYQFQV--VIKPSP---DNI 88 (293)
T ss_pred CCCEEEcCcccccccccCCHHHHHHh---cCCCcceeccccCCCCCCCCCCCCCchhhhheeeeEE--EECCCC---ccH
Confidence 466777777765431 111111 23689999999999986433332 4457778665 334554 456
Q ss_pred HHHHHHHHHHCCCC
Q psy17090 80 IIMCSRLWKNLNLK 93 (373)
Q Consensus 80 i~l~~~~l~~lg~~ 93 (373)
-.+-+++|+.+|++
T Consensus 89 QelYL~SL~~lGid 102 (293)
T TIGR00388 89 QELYLDSLRALGID 102 (293)
T ss_pred HHHHHHHHHHhCCC
Confidence 77889999999984
No 263
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=23.24 E-value=3.5e+02 Score=20.74 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=42.0
Q ss_pred eeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcC
Q psy17090 239 SGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASN 318 (373)
Q Consensus 239 vGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~g 318 (373)
||++-.--.++..|.+.+ .+|.++-.++ +.++.+++.|+.+. +.+ .+-.+.++.+.-..
T Consensus 4 ~G~g~~~~~i~~~L~~~~--------~~vvvid~d~-------~~~~~~~~~~~~~i--~gd----~~~~~~l~~a~i~~ 62 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGG--------IDVVVIDRDP-------ERVEELREEGVEVI--YGD----ATDPEVLERAGIEK 62 (116)
T ss_dssp ES-SHHHHHHHHHHHHTT--------SEEEEEESSH-------HHHHHHHHTTSEEE--ES-----TTSHHHHHHTTGGC
T ss_pred EcCCHHHHHHHHHHHhCC--------CEEEEEECCc-------HHHHHHHhcccccc--ccc----chhhhHHhhcCccc
Confidence 455544455555565522 3566665543 33566888886643 333 45566788888888
Q ss_pred CCEEEEEccCc
Q psy17090 319 ANFAAIIGENE 329 (373)
Q Consensus 319 i~~~vivg~~e 329 (373)
+..+++..+++
T Consensus 63 a~~vv~~~~~d 73 (116)
T PF02254_consen 63 ADAVVILTDDD 73 (116)
T ss_dssp ESEEEEESSSH
T ss_pred cCEEEEccCCH
Confidence 88888886543
No 264
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=23.17 E-value=1.4e+02 Score=25.25 Aligned_cols=29 Identities=7% Similarity=0.171 Sum_probs=22.8
Q ss_pred EEcCCCchhhHHHHHHHHHHHHHCCCCceEEEe
Q psy17090 67 AIGFPGPDIDAELIIMCSRLWKNLNLKNICLEL 99 (373)
Q Consensus 67 iig~~~~~~d~Evi~l~~~~l~~lg~~~~~i~i 99 (373)
|.|++ .|.++.+-+.++|++||++ |.+++
T Consensus 8 IMGS~---SD~~~mk~Aa~~L~~fgi~-ye~~V 36 (162)
T COG0041 8 IMGSK---SDWDTMKKAAEILEEFGVP-YEVRV 36 (162)
T ss_pred EecCc---chHHHHHHHHHHHHHcCCC-eEEEE
Confidence 44544 5799999999999999996 66554
No 265
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=23.13 E-value=3.1e+02 Score=28.82 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=40.8
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
.|+.|++.| .....+++.++.|.+.|+++++..-.. -..+++..-.....+...+|++-+.-
T Consensus 496 ~dvtIva~G-~~v~~al~Aa~~L~~~gi~~~VId~~~--lkPlD~e~i~~~~~k~~~vvtvEE~~ 557 (617)
T TIGR00204 496 EKILILGFG-TLVPEALEVAESLNEKGIEATVVDARF--VKPLDEELILEIAASHEKLVTVEENA 557 (617)
T ss_pred CCEEEEEcC-HHHHHHHHHHHHHHhcCCCEEEEecCc--CCcCCHHHHHHHHhhcCeEEEEECCC
Confidence 478888776 456789999999999999999875421 12233332223334666788887654
No 266
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.07 E-value=2.3e+02 Score=23.32 Aligned_cols=13 Identities=8% Similarity=-0.110 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHHH
Q psy17090 355 SFKDAENYFYKKI 367 (373)
Q Consensus 355 ~~~el~~~l~~~~ 367 (373)
++++++++|.+.+
T Consensus 120 ~~~~iv~~l~~~~ 132 (134)
T TIGR01501 120 PPEVVIADLKKDL 132 (134)
T ss_pred CHHHHHHHHHHHh
Confidence 7889999988765
No 267
>KOG2411|consensus
Probab=22.95 E-value=79 Score=32.02 Aligned_cols=31 Identities=23% Similarity=0.528 Sum_probs=22.3
Q ss_pred hhHHhhcCCCCCeeeeechHHHHHHHHHhhc
Q psy17090 226 FLIKKFSNKFVPASGFAIGIERLIELIKKIN 256 (373)
Q Consensus 226 ~L~~~f~~~~~pavGfai~le~l~~~l~~~~ 256 (373)
+|+..+..-..|--|||+|+||++.++....
T Consensus 556 HLL~ALd~GaPPHGGiAlGlDRlvaml~~a~ 586 (628)
T KOG2411|consen 556 HLLNALDMGAPPHGGIALGLDRLVAMLTGAP 586 (628)
T ss_pred HHHHHhhcCCCCCCceeecHHHHHHHHcCCC
Confidence 4555554334567799999999999997753
No 268
>KOG0556|consensus
Probab=22.82 E-value=26 Score=34.36 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=29.4
Q ss_pred CeeEEEeeceeecCCCCC-CCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHH
Q psy17090 37 PKRLWYSGPMFRHERPQY-GRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWK 88 (373)
Q Consensus 37 p~k~~y~g~vfR~~~~~~-gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~ 88 (373)
--|.|.+|+|||.|.+.- -+.-||.-.++|.-=. ..-.||+.++.+.|-
T Consensus 294 f~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~---~hYhEVm~~i~~lfv 343 (533)
T KOG0556|consen 294 FERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFN---EHYHEVMDTIGELFV 343 (533)
T ss_pred hhheeeecceeeccccchhhhhHHhhCcchhhHHH---HHHHHHHHHHHHHHH
Confidence 459999999999876542 2345776555543111 123566666655543
No 269
>PF11113 Phage_head_chap: Head assembly gene product; InterPro: IPR021049 This head assembly protein is also refereed to as gene product 40 (Gp40). A specific gp20-gp40 membrane insertion structure constitutes the T4 prohead assembly initiation complex [].
Probab=22.64 E-value=2.5e+02 Score=19.40 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=31.9
Q ss_pred cCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHHhhh
Q psy17090 317 SNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIKNI 371 (373)
Q Consensus 317 ~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~~~~ 371 (373)
.|-+++|.+-+-.+.+|++++-=-.-. +++ -+||.+++.+.+..|+
T Consensus 11 dG~~hiVYi~~~~~~~G~l~vdfsT~~------e~~---k~el~phVe~ci~~Qi 56 (56)
T PF11113_consen 11 DGESHIVYITELHYDDGKLKVDFSTPS------EDR---KEELAPHVEKCIQAQI 56 (56)
T ss_pred CCCEEEEEEEEEEEcCCeEEEEEeCCC------cch---hhHHHHHHHHHHhhcC
Confidence 477788888776677788877433222 222 7889999998887775
No 270
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=22.57 E-value=4.4e+02 Score=26.91 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=46.3
Q ss_pred HHHHHhCCC-cEEEecCCCCCCCCccceEEEEE--eCCCCCccceeccCccc-hhHHhhcCC-CCCeeeeechHHHHHHH
Q psy17090 177 QKILNYNNI-SYKINTKLVRGMDYYNRTVFEWT--TDKLGSQNSICGGGRYD-FLIKKFSNK-FVPASGFAIGIERLIEL 251 (373)
Q Consensus 177 ~~~l~~~g~-~i~~D~~~~r~~~YYtG~vFe~~--~~~~g~~~~ia~GGRYD-~L~~~f~~~-~~pavGfai~le~l~~~ 251 (373)
.+.++.+|+ ++.|-|+.. =||-.-+|++ ++..|.=-.|++-|=.. .++...|-+ +.++..|++|+||+..+
T Consensus 402 ~~f~~~lG~~~~RfrP~yf----PfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi~~~~~~~A~GlGleRlaMi 477 (494)
T PTZ00326 402 REFFRRIGITKLRFKPAFN----PYTEPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMGFPEDVTVIAWGLSLERPTMI 477 (494)
T ss_pred HHHHHhcCCCceEEecCCC----CCCCCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcCCCCcceEEEEEecHHHHHHH
Confidence 345566676 466766643 3676666665 44333114678888888 888777632 35578899999999755
Q ss_pred H
Q psy17090 252 I 252 (373)
Q Consensus 252 l 252 (373)
.
T Consensus 478 ~ 478 (494)
T PTZ00326 478 K 478 (494)
T ss_pred H
Confidence 3
No 271
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=22.36 E-value=3.7e+02 Score=20.75 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHH
Q psy17090 282 VLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAEN 361 (373)
Q Consensus 282 ~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~ 361 (373)
++.+.|.+.-+.+..+... ....+........+.|.++++++. +|++ ++ .-.| .++.+++..
T Consensus 44 ~v~~~l~~~~v~~~~d~~~----~e~~~~~~~~~~~~~P~~~~i~~~---~g~~-l~-~~~G---------~~~~~~f~~ 105 (114)
T cd02958 44 SVKEFIRENFIFWQCDIDS----SEGQRFLQSYKVDKYPHIAIIDPR---TGEV-LK-VWSG---------NITPEDLLS 105 (114)
T ss_pred HHHHHHHhCEEEEEecCCC----ccHHHHHHHhCccCCCeEEEEeCc---cCcE-eE-EEcC---------CCCHHHHHH
Confidence 5566666654444444433 333444555567799999999874 2433 22 2344 567788888
Q ss_pred HHHHHHHh
Q psy17090 362 YFYKKIIK 369 (373)
Q Consensus 362 ~l~~~~~~ 369 (373)
.|.+.+..
T Consensus 106 ~L~~~~~~ 113 (114)
T cd02958 106 QLIEFLEE 113 (114)
T ss_pred HHHHHHhc
Confidence 88876654
No 272
>PLN02603 asparaginyl-tRNA synthetase
Probab=22.19 E-value=63 Score=33.54 Aligned_cols=49 Identities=29% Similarity=0.685 Sum_probs=33.7
Q ss_pred EEEEEeCCCCCccceeccC----ccchhHHhhcC-----------------CCCCeeeeechHHHHHHHHHhh
Q psy17090 204 VFEWTTDKLGSQNSICGGG----RYDFLIKKFSN-----------------KFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 204 vFe~~~~~~g~~~~ia~GG----RYD~L~~~f~~-----------------~~~pavGfai~le~l~~~l~~~ 255 (373)
-|++++++.| .|++|+ ||+.|..+... -..|.-||++|+||++.++...
T Consensus 478 ~fDLl~p~~g---El~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~ 547 (565)
T PLN02603 478 AMDMLVPRVG---ELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGI 547 (565)
T ss_pred EEEEEecCce---EecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCC
Confidence 5777777543 677776 56666554321 1457889999999999998664
No 273
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=21.94 E-value=1.6e+02 Score=27.22 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCceEeecCCChHHH-----HHHHHHhcCCCCCCeeEEEeeceeecCCCCCC----CCcceeeeEEEEEcCCCchhhHHH
Q psy17090 9 NGDNLSLRPEGTASV-----IRSVIENNLIYDGPKRLWYSGPMFRHERPQYG----RYRQFYQIGVEAIGFPGPDIDAEL 79 (373)
Q Consensus 9 ~G~~l~LRpD~T~~i-----aR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~g----r~ref~Q~g~eiig~~~~~~d~Ev 79 (373)
.|-.+.-++|+-+.- +-++.. .++.|.+.+|+.|..|......| |...++|.-+ |=.+++ ..+
T Consensus 20 ~GC~i~qPyD~EvGAGT~~P~Tflr~---Lgpepw~vaYvqPsRRP~DGRYGeNPNRLq~y~QfQV--ilKPsP---~ni 91 (283)
T PRK09348 20 QGCVILQPYDMEVGAGTFHPATFLRA---LGPEPWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQV--ILKPSP---DNI 91 (283)
T ss_pred CCCEEECCcccccccccCCHHHHHHh---cCCCccccccccCCCCCCCCCcCCCchhhhhheeeEE--EEcCCC---ccH
Confidence 567777777765432 111111 23689999999999986443333 4457778665 334554 456
Q ss_pred HHHHHHHHHHCCCC
Q psy17090 80 IIMCSRLWKNLNLK 93 (373)
Q Consensus 80 i~l~~~~l~~lg~~ 93 (373)
-.+-+++|+.+|++
T Consensus 92 QelYL~SL~~lGid 105 (283)
T PRK09348 92 QELYLGSLEALGID 105 (283)
T ss_pred HHHHHHHHHHhCCC
Confidence 77889999999984
No 274
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.86 E-value=2.4e+02 Score=21.43 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=20.8
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEe
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNC 298 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~ 298 (373)
..|+.|+..+--.-.....+-+.-.+.|+++.+.-
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 46777777654332333344455567788887665
No 275
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=21.57 E-value=5.4e+02 Score=24.87 Aligned_cols=77 Identities=16% Similarity=0.058 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhH--HHHHHHHHHHHHcCCeEEEEe--ccCccccCHHHHHHHHHHcCC
Q psy17090 244 GIERLIELIKKININHNFSHQCDIYIVHVGKEAE--LKAFVLSENLRTLGLKVILNC--VFNNIHESFKSQMKRANASNA 319 (373)
Q Consensus 244 ~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~--~~~~~la~~Lr~~Gi~v~~~~--~~~~~~~sl~~~~~~a~~~gi 319 (373)
.++++-+.+.+.+. ..++|+. ++... ...-++.+.|.+.|+.+.+.. .++.....+.+..+.++..++
T Consensus 11 ~~~~l~~~l~~~g~-------~~~liv~-~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~ 82 (370)
T cd08192 11 AIKELPAECAELGI-------KRPLIVT-DPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGC 82 (370)
T ss_pred HHHHHHHHHHHcCC-------CeEEEEc-CcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 35566555555431 2355554 22221 234567778888888775442 121122356677788888888
Q ss_pred CEEEEEccC
Q psy17090 320 NFAAIIGEN 328 (373)
Q Consensus 320 ~~~vivg~~ 328 (373)
+.+|-||..
T Consensus 83 d~IIaiGGG 91 (370)
T cd08192 83 DGVIAFGGG 91 (370)
T ss_pred CEEEEeCCc
Confidence 888888763
No 276
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=21.51 E-value=6.8e+02 Score=24.23 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCeEEEEe-ccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 281 FVLSENLRTLGLKVILNC-VFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 281 ~~la~~Lr~~Gi~v~~~~-~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
-++.+.|.+.|+.+.+.. .++.....+.+..+.+++.+++.+|-||..
T Consensus 37 ~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 85 (374)
T cd08183 37 AWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGG 85 (374)
T ss_pred HHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 345555666666554331 111112234455555666666666666643
No 277
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=21.28 E-value=2.3e+02 Score=23.08 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=26.9
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHH
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR 313 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~ 313 (373)
+|++|+..+.... ..+++.|++.|.+|.+.... .+....++.
T Consensus 100 ~d~ivLvSgD~Df---~~~i~~lr~~G~~V~v~~~~----~~~s~~L~~ 141 (149)
T cd06167 100 IDTIVLVSGDSDF---VPLVERLRELGKRVIVVGFE----AKTSRELRK 141 (149)
T ss_pred CCEEEEEECCccH---HHHHHHHHHcCCEEEEEccC----ccChHHHHH
Confidence 5566655554433 35677889999999888764 344444443
No 278
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=21.25 E-value=3.9e+02 Score=21.14 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCe-EEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc--CcccCCeEEEEEC
Q psy17090 282 VLSENLRTLGLK-VILNCVFNNIHESFKSQMKRANASNANFAAIIGE--NEIINNTLIIKDL 340 (373)
Q Consensus 282 ~la~~Lr~~Gi~-v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~--~e~~~~~v~Vk~l 340 (373)
+.+..+...|.+ +.+-.++ ...+.+..+.|+..|+++.+|.+. .++..|+.+|--+
T Consensus 40 ~~~~~W~~~g~~Kivlkv~~---e~~L~~l~~~a~~~gl~~~~i~Dag~Tei~pgs~Tvlai 98 (116)
T PF01981_consen 40 EWLREWENNGQKKIVLKVPS---EEELLELAKKAKEAGLPHYLIRDAGRTEIPPGSVTVLAI 98 (116)
T ss_dssp HHHHHHHHTTTSEEEEEESS---HHHHHHHHHHHHHTT-SEEEEEETSSSSSSTTCEEEEEE
T ss_pred HHHHHHhcCCCceEEEEeCC---HHHHHHHHHHHHHCCCCEEEEEECCCCcCCCCCeEEEEE
Confidence 344555667764 3333332 157788888999999999998765 3556777777655
No 279
>KOG0554|consensus
Probab=21.22 E-value=88 Score=30.74 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=25.4
Q ss_pred eEEEeeceeecCCCCCC-CCcceeeeEEEEEcCCC
Q psy17090 39 RLWYSGPMFRHERPQYG-RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 39 k~~y~g~vfR~~~~~~g-r~ref~Q~g~eiig~~~ 72 (373)
|.|.+|+.||.|+++.. +.-|||..-+|+--.++
T Consensus 207 rvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~s 241 (446)
T KOG0554|consen 207 RVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAES 241 (446)
T ss_pred ceEeeccceecccCCchhHHhhhhhhhhHHHHHHH
Confidence 88999999998877643 34689988887755443
No 280
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=21.08 E-value=3.9e+02 Score=21.24 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=36.6
Q ss_pred HHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc--cCcccCCeEEEEEC
Q psy17090 283 LSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG--ENEIINNTLIIKDL 340 (373)
Q Consensus 283 la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg--~~e~~~~~v~Vk~l 340 (373)
..+.++..|.+..+.--+ +-..+.+..+.|+..|+++.++.+ .-|...|+.+|--+
T Consensus 38 ~~~~W~~~G~~Kvvlkv~--~~~el~~l~~~a~~~~l~~~~v~DAG~Tei~~gs~Tvlai 95 (113)
T PRK04322 38 WLEEWLNEGQKKVVLKVN--SEEELLELKEKAERLGLPTALIRDAGLTQLPPGTVTALGI 95 (113)
T ss_pred HHHHHHHCCCcEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCcEEEEe
Confidence 345566778776555322 014577778888899999988865 34556677777555
No 281
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=21.08 E-value=2.9e+02 Score=23.19 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=12.7
Q ss_pred cCHHHHHHHHHHcCCCEEEEE
Q psy17090 305 ESFKSQMKRANASNANFAAII 325 (373)
Q Consensus 305 ~sl~~~~~~a~~~gi~~~viv 325 (373)
+++.+.++...+.|+..+|++
T Consensus 99 P~i~~~l~~l~~~g~~~iivl 119 (159)
T cd03411 99 PSIEEALEELKADGVDRIVVL 119 (159)
T ss_pred CCHHHHHHHHHHcCCCEEEEE
Confidence 556666666666666665555
No 282
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=21.07 E-value=4.7e+02 Score=21.49 Aligned_cols=93 Identities=11% Similarity=0.026 Sum_probs=56.0
Q ss_pred EEEEcCchhH---HHHHHHHHHHHHcCCe--EEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCc--ccCCeEEEEEC
Q psy17090 268 YIVHVGKEAE---LKAFVLSENLRTLGLK--VILNCVFNNIHESFKSQMKRANASNANFAAIIGENE--IINNTLIIKDL 340 (373)
Q Consensus 268 ~v~~~~~~~~---~~~~~la~~Lr~~Gi~--v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e--~~~~~v~Vk~l 340 (373)
+|+..|+... .-...++++|++.... +.+.... ......+...+..+...+|+++.-. .+.|+|...+.
T Consensus 2 lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~g----t~~~~~~~~~~~~~~d~viivDA~~~g~~PG~v~~~~~ 77 (146)
T TIGR00142 2 VLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAG----TVPENFTVAIRELRPTHILIVDATDMGLNPGEVRIIDD 77 (146)
T ss_pred EEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECC----CChHHHHHHHHhcCCCEEEEEECcccCCCCCeEEEECh
Confidence 4566665432 3467888889876432 4444433 3445555666667899999998632 35688777553
Q ss_pred CCCCCCCCccceeecHHHHHHHHHH
Q psy17090 341 RNKYEDPTLKQISISFKDAENYFYK 365 (373)
Q Consensus 341 ~~~~~~~~~~~~~v~~~el~~~l~~ 365 (373)
+.. .........+++.+++..+..
T Consensus 78 ~~~-~~~~~s~H~~~l~~ll~~~~~ 101 (146)
T TIGR00142 78 DII-EMYSMSTHNMPLSYLVDYLKE 101 (146)
T ss_pred hhc-cccccCcCcCCHHHHHHHHHh
Confidence 211 111235667888888877654
No 283
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=21.04 E-value=6.6e+02 Score=23.16 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEE
Q psy17090 244 GIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAA 323 (373)
Q Consensus 244 ~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~v 323 (373)
.+|+++......+... .+.+++..|.- ..+++.+.-.+||++.+.... -...+++-|++.|+.-+=
T Consensus 183 AvDKviG~all~g~~~-----~~~~l~~SGR~----s~emv~Ka~~aGipvivS~sa-----PT~lAVelA~~~giTLiG 248 (263)
T PRK00724 183 ALDKLIGAALRAGIPL-----RDGALLVSGRA----SSEMVQKAAMAGIPILVAVSA-----PTSLAVELAEELGLTLVG 248 (263)
T ss_pred HHHHHHHHHHHcCCCc-----cCcEEEEeCCc----hHHHHHHHHHcCCcEEEEccc-----chHHHHHHHHHhCCEEEE
Confidence 6788888776655432 33344444432 237777888899999888764 566789999999999988
Q ss_pred EEccCcccCCeEEEE
Q psy17090 324 IIGENEIINNTLIIK 338 (373)
Q Consensus 324 ivg~~e~~~~~v~Vk 338 (373)
++.. +.++|.
T Consensus 249 f~R~-----~r~~vY 258 (263)
T PRK00724 249 FARG-----GRFNIY 258 (263)
T ss_pred EecC-----CCeEEc
Confidence 8864 455554
No 284
>KOG0523|consensus
Probab=20.96 E-value=3.3e+02 Score=28.43 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=49.6
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEE
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLII 337 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~V 337 (373)
.||.++..| .....+++.|+.|.+.|+.+.+.... -++-++-++-.-..+...+.+++-++-...+.+.+
T Consensus 506 ~dV~LiG~G-s~v~~cl~AA~~L~~~gi~vrVvd~~--~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~ 575 (632)
T KOG0523|consen 506 PDVILIGTG-SEVQECLEAAELLSEDGIKVRVVDPF--TWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEV 575 (632)
T ss_pred CCEEEEecc-HHHHHHHHHHHHHHhcCceEEEeccc--ceeecchHHhhhhhcccceeEEEccCCCCCcchhh
Confidence 477777654 56778999999999999999877542 23566656555666778888888776665554443
No 285
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=20.91 E-value=76 Score=33.09 Aligned_cols=20 Identities=25% Similarity=0.675 Sum_probs=17.2
Q ss_pred CCeeeeechHHHHHHHHHhh
Q psy17090 236 VPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 236 ~pavGfai~le~l~~~l~~~ 255 (373)
.|+-|+++|+|||+.++...
T Consensus 550 PPtgG~GiGIDRLvMlltg~ 569 (585)
T PTZ00417 550 PPTGGLGLGIDRITMFLTNK 569 (585)
T ss_pred CCCceEEEcHHHHHHHHcCC
Confidence 47889999999999998664
No 286
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.85 E-value=3.8e+02 Score=24.56 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=32.8
Q ss_pred HHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 285 ENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 285 ~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
+.++..|+.+.+.-+++ ......+++.|++.|++.++|=.+.+
T Consensus 188 al~~~~~i~~lVtK~SG--~~g~~eKi~AA~~lgi~vivI~RP~~ 230 (249)
T PF02571_consen 188 ALFRQYGIDVLVTKESG--GSGFDEKIEAARELGIPVIVIKRPPE 230 (249)
T ss_pred HHHHHcCCCEEEEcCCC--chhhHHHHHHHHHcCCeEEEEeCCCC
Confidence 35777799887765532 13678899999999999999887653
No 287
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=20.78 E-value=6.4e+02 Score=24.26 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCeEEEEec--cCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 280 AFVLSENLRTLGLKVILNCV--FNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 280 ~~~la~~Lr~~Gi~v~~~~~--~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
..++.+.|.+.|+.+.+... .+.....+.+..+.++..+++.+|-||.
T Consensus 40 ~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG 89 (370)
T cd08551 40 LDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG 89 (370)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34566666666666543321 1112234556666666677777776765
No 288
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.77 E-value=3.5e+02 Score=28.99 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=40.3
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
.|+.|+..| .....+++.++.|.+.|+++.+..-.. -.-+++..=.........+|++-++
T Consensus 568 ~dvtIia~G-~mv~~Al~AA~~L~~~GI~vtVIdlr~--ikPLD~e~I~~~~~k~~~vVTvEE~ 628 (701)
T PLN02225 568 QDVALLGYG-AMVQNCLHAHSLLSKLGLNVTVADARF--CKPLDIKLVRDLCQNHKFLITVEEG 628 (701)
T ss_pred CCEEEEecc-HHHHHHHHHHHHHHhcCCCEEEEecCC--CCCCCHHHHHHHHhhcCeEEEEcCC
Confidence 477888775 466789999999999999998875420 1223333222223456788888764
No 289
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=20.59 E-value=2.3e+02 Score=27.33 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=24.2
Q ss_pred HhhcCCCCCeeeeechHHHHHHHHHhhcCCC
Q psy17090 229 KKFSNKFVPASGFAIGIERLIELIKKININH 259 (373)
Q Consensus 229 ~~f~~~~~pavGfai~le~l~~~l~~~~~~~ 259 (373)
..+...+.-|||||+|=.-|...+.+++..+
T Consensus 143 ~~~~~r~~~avG~SLGgnmLa~ylgeeg~d~ 173 (345)
T COG0429 143 ARFPPRPLYAVGFSLGGNMLANYLGEEGDDL 173 (345)
T ss_pred HhCCCCceEEEEecccHHHHHHHHHhhccCc
Confidence 3344456679999999999999999887643
No 290
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=20.49 E-value=6.8e+02 Score=26.01 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=26.6
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEecc
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
+++-.+++.|-..+++|.++.+.|-..|++... +.+
T Consensus 123 ~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~-fKP 158 (717)
T COG4981 123 PIDGVVISAGIPSLEEAVELIEELGDDGFPYVA-FKP 158 (717)
T ss_pred CcceEEEecCCCcHHHHHHHHHHHhhcCceeEE-ecC
Confidence 567777777766678888888888888888744 444
No 291
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.48 E-value=2.9e+02 Score=22.59 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHcCC-CEEEEEcc
Q psy17090 306 SFKSQMKRANASNA-NFAAIIGE 327 (373)
Q Consensus 306 sl~~~~~~a~~~gi-~~~vivg~ 327 (373)
.+.+.++..++.|+ ...|++|.
T Consensus 66 ~~~~~~~~l~~~gl~~v~vivGG 88 (128)
T cd02072 66 DCKGLREKCDEAGLKDILLYVGG 88 (128)
T ss_pred HHHHHHHHHHHCCCCCCeEEEEC
Confidence 34555555566665 44455553
No 292
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=20.40 E-value=66 Score=27.92 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=19.4
Q ss_pred ccCccchhHHhhcCCCCCeeeeechHH
Q psy17090 220 GGGRYDFLIKKFSNKFVPASGFAIGIE 246 (373)
Q Consensus 220 ~GGRYD~L~~~f~~~~~pavGfai~le 246 (373)
|||=||..+.++.....+.+|+++...
T Consensus 130 GgGyYDR~L~~~~~~~~~~igla~~~Q 156 (182)
T PRK10333 130 GGGFYDRTLQNWQHYKTQPVGYAHDCQ 156 (182)
T ss_pred CcchHHHHHHHhcccCCcEEEEeeeeE
Confidence 789999999987533334688877643
No 293
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=20.38 E-value=2e+02 Score=21.74 Aligned_cols=46 Identities=7% Similarity=-0.156 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 277 ELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 277 ~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
..+|.+-+..|.+++...... .. .........|+..|+.|.|+-..
T Consensus 32 edDA~RYa~lLEAqd~~~p~V-e~----id~~~i~~fC~~~gy~~~iv~~g 77 (86)
T PF11360_consen 32 EDDAERYAGLLEAQDFPDPTV-EE----IDPEEIEEFCRSAGYEYEIVPPG 77 (86)
T ss_pred HHHHHHHHHHHHhcCCCCCCe-EE----ECHHHHHHHHHHCCceEEEECCC
Confidence 467788899999998876422 22 56778899999999999998643
No 294
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=20.08 E-value=6.3e+02 Score=24.79 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCeEEEEe--ccCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 282 VLSENLRTLGLKVILNC--VFNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 282 ~la~~Lr~~Gi~v~~~~--~~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
++.+.|.+.|+.+.+.. .++.....+.+..+.+++.+++.+|-||.
T Consensus 68 ~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGG 115 (395)
T PRK15454 68 GLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGG 115 (395)
T ss_pred HHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 45555555555544331 11101122345555555566666665554
No 295
>KOG1432|consensus
Probab=20.04 E-value=1e+02 Score=29.69 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.3
Q ss_pred cCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 305 ESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 305 ~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
.++.+++.=|...||||++++|.++
T Consensus 121 ~sl~kAvaP~I~~~IPwA~~lGNHD 145 (379)
T KOG1432|consen 121 TSLMKAVAPAIDRKIPWAAVLGNHD 145 (379)
T ss_pred HHHHHHhhhHhhcCCCeEEEecccc
Confidence 6888999999999999999999763
No 296
>PRK02399 hypothetical protein; Provisional
Probab=20.03 E-value=4.5e+02 Score=26.11 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=48.6
Q ss_pred CCCeeeeec------hHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcC-CeEEEEeccC------
Q psy17090 235 FVPASGFAI------GIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLG-LKVILNCVFN------ 301 (373)
Q Consensus 235 ~~pavGfai------~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~G-i~v~~~~~~~------ 301 (373)
+.|.||.++ +++++.+.|++.+ ++|+|+..... -.. ..++|-..| +...+++..-
T Consensus 185 ~kp~Ig~TmfGvTtp~v~~~~~~Le~~G--------yEvlVFHATG~-GGr---aME~Li~~G~~~gVlDlTttEv~d~l 252 (406)
T PRK02399 185 DKPLIGLTMFGVTTPCVQAAREELEARG--------YEVLVFHATGT-GGR---AMEKLIDSGLIAGVLDLTTTEVCDEL 252 (406)
T ss_pred CCceEEEecCCCcHHHHHHHHHHHHhCC--------CeEEEEcCCCC-chH---HHHHHHHcCCceEEEEcchHHHHHHH
Confidence 578887554 5788888887755 67888865321 111 223444444 4555554310
Q ss_pred --ccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 302 --NIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 302 --~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
-...--...+..|-+.|||++|.+|.
T Consensus 253 ~GGv~sagp~Rl~Aa~~~gIP~Vvs~Ga 280 (406)
T PRK02399 253 FGGVLAAGPDRLEAAARTGIPQVVSPGA 280 (406)
T ss_pred hCcCccCCccHHHHHHHcCCCEEecCCc
Confidence 00011245788999999999988864
Done!