Query psy17090
Match_columns 373
No_of_seqs 180 out of 1448
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 21:36:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e51_A Histidine--tRNA ligase; 100.0 4.2E-71 1.4E-75 550.9 41.1 359 1-367 94-458 (467)
2 1h4v_B Histidyl-tRNA synthetas 100.0 8.1E-68 2.8E-72 523.1 41.2 353 1-367 65-420 (421)
3 1htt_A Histidyl-tRNA synthetas 100.0 1.5E-68 5E-73 528.7 33.4 354 1-367 66-422 (423)
4 3lc0_A Histidyl-tRNA synthetas 100.0 1.1E-66 3.6E-71 516.7 34.5 333 1-359 88-446 (456)
5 3net_A Histidyl-tRNA synthetas 100.0 1.3E-66 4.6E-71 518.9 27.9 346 1-366 70-463 (465)
6 4g85_A Histidine-tRNA ligase, 100.0 3.9E-65 1.3E-69 515.6 35.1 352 1-369 125-515 (517)
7 4g84_A Histidine--tRNA ligase, 100.0 4E-65 1.4E-69 509.9 32.4 351 1-369 72-462 (464)
8 1wu7_A Histidyl-tRNA synthetas 100.0 3.9E-65 1.3E-69 505.6 30.3 346 1-367 65-425 (434)
9 1qe0_A Histidyl-tRNA synthetas 100.0 8E-64 2.7E-68 494.4 30.6 351 1-364 64-419 (420)
10 3od1_A ATP phosphoribosyltrans 100.0 2E-59 6.8E-64 457.4 31.4 308 1-329 68-393 (400)
11 3rac_A Histidine-tRNA ligase; 100.0 3.2E-52 1.1E-56 403.0 17.3 250 1-256 82-367 (373)
12 1z7m_A ATP phosphoribosyltrans 100.0 1.8E-51 6E-56 394.3 20.9 243 1-257 84-339 (344)
13 1usy_A ATP phosphoribosyltrans 100.0 1E-46 3.5E-51 350.8 14.5 223 3-248 39-273 (275)
14 2j3l_A Prolyl-tRNA synthetase; 100.0 1.6E-41 5.3E-46 347.2 23.0 348 1-368 93-565 (572)
15 1evl_A Threonyl-tRNA synthetas 100.0 8.5E-40 2.9E-44 320.6 25.7 291 1-369 76-393 (401)
16 2i4l_A Proline-tRNA ligase; al 100.0 2.5E-41 8.6E-46 336.3 12.8 321 1-363 113-457 (458)
17 3a32_A Probable threonyl-tRNA 100.0 1.6E-39 5.4E-44 324.4 8.7 309 1-367 95-446 (471)
18 1nyr_A Threonyl-tRNA synthetas 100.0 2.1E-36 7.1E-41 312.7 25.4 300 1-368 317-640 (645)
19 1qf6_A THRRS, threonyl-tRNA sy 100.0 1.1E-34 3.7E-39 298.8 29.7 292 1-368 317-633 (642)
20 3uh0_A Threonyl-tRNA synthetas 100.0 4.7E-34 1.6E-38 282.9 26.9 296 1-368 111-457 (460)
21 1hc7_A Prolyl-tRNA synthetase; 100.0 2E-34 6.8E-39 287.0 23.9 271 1-367 91-385 (477)
22 1nj8_A Proline-tRNA synthetase 100.0 2.5E-33 8.5E-38 278.2 23.1 272 1-368 85-380 (459)
23 2zt5_A Glycyl-tRNA synthetase; 100.0 8.5E-35 2.9E-39 300.0 12.1 325 9-368 236-657 (693)
24 1nj1_A PROR, proline-tRNA synt 100.0 1.2E-32 4.2E-37 275.7 23.4 273 1-368 117-413 (501)
25 1ati_A Glycyl-tRNA synthetase; 100.0 1.9E-29 6.7E-34 252.7 15.1 286 10-367 180-503 (505)
26 4hvc_A Bifunctional glutamate/ 99.9 6.3E-25 2.1E-29 219.3 28.8 276 1-368 108-413 (519)
27 3ial_A Prolyl-tRNA synthetase; 99.9 7.1E-24 2.4E-28 211.1 23.1 254 1-359 102-398 (518)
28 1g5h_A Mitochondrial DNA polym 99.8 4.9E-19 1.7E-23 174.8 18.5 123 236-368 290-438 (454)
29 3ikl_A DNA polymerase subunit 99.8 3.3E-18 1.1E-22 167.1 21.4 268 13-369 147-449 (459)
30 1v95_A Nuclear receptor coacti 99.5 2.9E-13 9.9E-18 109.4 11.2 98 262-369 6-107 (130)
31 3dsq_A Pyrrolysyl-tRNA synthet 99.3 1E-11 3.5E-16 115.4 9.5 97 1-98 114-210 (288)
32 2dq3_A Seryl-tRNA synthetase; 99.2 2.8E-11 9.6E-16 118.4 6.6 99 1-104 218-329 (425)
33 1nnh_A Asparaginyl-tRNA synthe 99.0 1.4E-10 4.7E-15 108.2 5.8 192 9-255 66-275 (294)
34 3qtc_A Pyrrolysyl-tRNA synthet 98.9 4.6E-09 1.6E-13 97.8 11.0 85 11-98 129-213 (290)
35 2dq0_A Seryl-tRNA synthetase; 98.9 2.6E-09 8.9E-14 105.1 9.5 96 1-101 239-344 (455)
36 1ses_A Seryl-tRNA synthetase; 98.9 2.5E-09 8.5E-14 104.4 7.9 92 1-97 212-315 (421)
37 2cja_A Seryl-tRNA synthetase; 98.7 1.3E-08 4.4E-13 101.3 5.6 84 9-93 315-407 (522)
38 3vbb_A Seryl-tRNA synthetase, 98.5 2.3E-07 7.8E-12 91.9 9.6 97 1-98 247-362 (522)
39 1wle_A Seryl-tRNA synthetase; 98.5 3.1E-07 1.1E-11 91.1 8.7 95 1-97 266-371 (501)
40 3lss_A Seryl-tRNA synthetase; 98.3 2.8E-06 9.7E-11 83.5 10.5 95 1-98 254-360 (484)
41 3qne_A Seryl-tRNA synthetase, 98.1 6.3E-06 2.2E-10 81.0 9.4 96 1-99 231-338 (485)
42 3err_A Fusion protein of micro 98.1 1E-05 3.5E-10 80.9 10.2 93 1-98 321-425 (536)
43 1x54_A Asparaginyl-tRNA synthe 98.1 6E-06 2.1E-10 80.8 7.9 75 1-90 173-250 (434)
44 3l4g_A Phenylalanyl-tRNA synth 98.1 9.5E-06 3.2E-10 80.1 8.8 87 11-99 320-407 (508)
45 2du3_A O-phosphoseryl-tRNA syn 97.9 3.6E-05 1.2E-09 76.4 9.7 85 12-98 180-265 (534)
46 1wyd_A Hypothetical aspartyl-t 97.8 5.7E-05 1.9E-09 73.7 9.5 75 1-90 172-249 (429)
47 1n9w_A Aspartyl-tRNA synthetas 97.8 1.2E-05 4.3E-10 78.2 4.4 76 1-90 163-241 (422)
48 3mf2_A BLL0957 protein; aminoa 97.8 0.00014 4.8E-09 68.1 11.3 93 10-103 141-237 (346)
49 1eov_A ASPRS, aspartyl-tRNA sy 97.6 0.00022 7.5E-09 70.7 9.8 74 1-88 216-293 (487)
50 2du7_A O-phosphoseryl-tRNA syn 97.0 0.0022 7.4E-08 63.7 9.8 80 11-92 191-271 (549)
51 3a74_A Lysyl-tRNA synthetase; 97.0 0.0025 8.4E-08 63.2 10.1 78 1-89 212-290 (493)
52 1b7y_A Phers, protein (phenyla 96.5 0.018 6.2E-07 54.4 11.3 76 11-92 171-247 (350)
53 2odr_B Phosphoseryl-tRNA synth 96.4 0.019 6.5E-07 57.7 11.4 85 12-98 199-284 (648)
54 1e1o_A Lysyl-tRNA synthetase, 96.4 0.014 4.8E-07 57.9 10.5 72 6-88 227-298 (504)
55 2odr_A Phosphoseryl-tRNA synth 96.4 0.019 6.6E-07 57.7 11.4 85 12-98 199-284 (665)
56 2odr_D Phosphoseryl-tRNA synth 96.4 0.02 6.7E-07 57.7 11.4 85 12-98 199-284 (685)
57 2odr_C Phosphoseryl-tRNA synth 96.3 0.026 8.7E-07 57.1 11.7 85 12-98 199-284 (701)
58 2rhq_A Phenylalanyl-tRNA synth 96.1 0.025 8.7E-07 52.1 9.6 77 12-92 109-186 (294)
59 3a5y_A GENX, putative lysyl-tR 95.5 0.016 5.6E-07 54.6 6.0 70 11-90 89-158 (345)
60 2xgt_A Asparaginyl-tRNA synthe 95.3 0.022 7.4E-07 55.6 6.1 54 9-71 176-232 (435)
61 3ica_A Phenylalanyl-tRNA synth 95.2 0.14 4.7E-06 44.7 10.7 96 4-99 50-162 (213)
62 3nem_A Aspartyl-tRNA synthetas 95.1 0.063 2.2E-06 52.2 8.7 58 9-72 181-239 (438)
63 3ig2_A Phenylalanyl-tRNA synth 95.0 0.11 3.8E-06 45.3 9.2 96 4-99 50-162 (213)
64 3l4g_B Phenylalanyl-tRNA synth 94.3 0.21 7.3E-06 50.4 10.5 85 5-93 440-525 (589)
65 2rhq_B Phenylalanyl-tRNA synth 93.7 0.23 7.7E-06 52.1 9.7 90 3-93 537-635 (795)
66 1c0a_A Aspartyl tRNA synthetas 92.3 0.48 1.7E-05 47.8 9.4 57 9-71 184-240 (585)
67 1l0w_A Aspartyl-tRNA synthetas 92.1 0.21 7.2E-06 50.3 6.5 57 9-71 190-246 (580)
68 3m4p_A Ehasnrs, asparaginyl-tR 91.9 0.22 7.5E-06 48.7 6.2 55 10-71 201-256 (456)
69 3pco_A Phenylalanyl-tRNA synth 91.8 0.25 8.5E-06 46.0 6.1 54 12-70 163-216 (327)
70 4ah6_A Aspartate--tRNA ligase, 91.6 0.26 9E-06 49.8 6.5 47 39-89 218-264 (617)
71 1b7y_B Phers, protein (phenyla 91.3 0.52 1.8E-05 49.2 8.6 87 3-98 532-627 (785)
72 4ex5_A Lysine--tRNA ligase; st 90.0 0.46 1.6E-05 47.2 6.4 56 10-71 251-306 (529)
73 3bju_A Lysyl-tRNA synthetase; 89.8 1.2 4E-05 44.3 9.3 57 9-71 222-278 (521)
74 3i7f_A Aspartyl-tRNA synthetas 86.3 1.2 4.1E-05 44.3 6.8 34 37-70 310-345 (548)
75 3pco_B Phenylalanyl-tRNA synth 86.0 2.1 7.2E-05 44.7 8.8 88 5-92 534-630 (795)
76 1wyd_A Hypothetical aspartyl-t 78.7 2.1 7.1E-05 41.4 5.0 50 202-255 341-411 (429)
77 4grd_A N5-CAIR mutase, phospho 77.8 20 0.00067 29.8 9.9 61 263-325 11-74 (173)
78 1x54_A Asparaginyl-tRNA synthe 77.2 2.1 7.2E-05 41.4 4.6 49 204-255 346-416 (434)
79 3cmq_A Phenylalanyl-tRNA synth 73.5 3.1 0.0001 40.0 4.6 50 13-68 114-164 (415)
80 3kuu_A Phosphoribosylaminoimid 72.7 28 0.00096 28.9 9.6 60 265-326 13-75 (174)
81 3lp6_A Phosphoribosylaminoimid 72.7 26 0.00089 29.1 9.4 61 264-326 7-70 (174)
82 1m5w_A Pyridoxal phosphate bio 71.2 14 0.00049 32.3 7.8 46 276-327 112-157 (243)
83 1xmp_A PURE, phosphoribosylami 69.7 35 0.0012 28.2 9.4 60 265-326 12-74 (170)
84 3trh_A Phosphoribosylaminoimid 68.9 28 0.00096 28.7 8.7 60 265-326 7-69 (169)
85 3gk0_A PNP synthase, pyridoxin 68.8 14 0.00047 33.0 7.3 68 246-326 105-184 (278)
86 3ors_A N5-carboxyaminoimidazol 68.1 41 0.0014 27.6 9.5 60 265-326 4-66 (163)
87 3oow_A Phosphoribosylaminoimid 67.2 45 0.0015 27.4 9.6 61 265-327 6-69 (166)
88 1u11_A PURE (N5-carboxyaminoim 65.3 50 0.0017 27.6 9.6 59 265-325 22-83 (182)
89 1o4v_A Phosphoribosylaminoimid 64.7 50 0.0017 27.6 9.5 59 265-325 14-75 (183)
90 3m4p_A Ehasnrs, asparaginyl-tR 64.3 5.9 0.0002 38.5 4.4 49 204-255 369-438 (456)
91 3o6c_A PNP synthase, pyridoxin 64.2 12 0.00041 33.1 6.0 42 279-326 112-153 (260)
92 2pju_A Propionate catabolism o 63.6 22 0.00077 30.8 7.7 94 216-326 66-180 (225)
93 3rg8_A Phosphoribosylaminoimid 62.6 58 0.002 26.6 9.4 60 265-326 3-66 (159)
94 2q5c_A NTRC family transcripti 60.9 15 0.00051 31.1 5.9 94 216-326 54-168 (196)
95 3i7f_A Aspartyl-tRNA synthetas 57.8 9.1 0.00031 38.0 4.5 48 204-255 462-530 (548)
96 1eov_A ASPRS, aspartyl-tRNA sy 53.5 13 0.00043 36.5 4.7 50 202-255 397-469 (487)
97 2xgt_A Asparaginyl-tRNA synthe 51.7 13 0.00045 35.7 4.5 50 203-255 347-417 (435)
98 2o8n_A APOA-I binding protein; 51.3 42 0.0014 29.9 7.4 57 265-321 80-136 (265)
99 1jzt_A Hypothetical 27.5 kDa p 49.2 54 0.0019 28.7 7.8 57 265-321 59-116 (246)
100 3dsq_A Pyrrolysyl-tRNA synthet 48.4 27 0.00092 31.5 5.8 68 178-254 197-266 (288)
101 2h31_A Multifunctional protein 46.9 1.1E+02 0.0037 29.2 9.9 62 264-327 265-329 (425)
102 4b4k_A N5-carboxyaminoimidazol 46.3 1.3E+02 0.0044 25.1 9.3 59 265-325 23-84 (181)
103 2ywx_A Phosphoribosylaminoimid 45.3 1.2E+02 0.0042 24.6 9.4 57 267-325 2-58 (157)
104 3a5y_A GENX, putative lysyl-tR 45.1 11 0.00037 35.2 2.6 29 227-255 303-331 (345)
105 3lyh_A Cobalamin (vitamin B12) 43.1 1.1E+02 0.0036 23.3 7.9 61 265-326 6-69 (126)
106 3vnd_A TSA, tryptophan synthas 41.6 43 0.0015 29.8 5.9 132 173-325 34-178 (267)
107 3nav_A Tryptophan synthase alp 40.5 33 0.0011 30.6 5.0 131 174-325 37-180 (271)
108 2jvf_A De novo protein M7; tet 40.0 33 0.0011 23.9 3.7 24 77-100 63-86 (96)
109 2d59_A Hypothetical protein PH 40.0 68 0.0023 25.3 6.4 50 264-320 77-126 (144)
110 3d3j_A Enhancer of mRNA-decapp 38.6 1.1E+02 0.0036 27.8 8.2 74 265-340 133-209 (306)
111 2ab1_A Hypothetical protein; H 38.1 38 0.0013 26.3 4.4 36 265-300 62-98 (122)
112 3qay_A Endolysin; amidase A/B 38.1 1.3E+02 0.0044 24.8 8.1 53 276-328 31-87 (180)
113 3a74_A Lysyl-tRNA synthetase; 38.0 33 0.0011 33.6 4.9 21 235-255 458-478 (493)
114 1y81_A Conserved hypothetical 37.8 95 0.0033 24.3 6.9 51 264-321 69-119 (138)
115 1lxj_A YBL001C, hypothetical 1 36.3 1.3E+02 0.0045 22.4 9.3 85 265-367 8-102 (104)
116 3d3k_A Enhancer of mRNA-decapp 36.1 1.1E+02 0.0037 27.0 7.7 73 265-340 86-162 (259)
117 3nem_A Aspartyl-tRNA synthetas 34.1 24 0.00082 34.0 3.2 49 203-255 351-420 (438)
118 1n9w_A Aspartyl-tRNA synthetas 33.5 23 0.0008 33.8 3.0 50 202-255 334-404 (422)
119 1c0a_A Aspartyl tRNA synthetas 33.0 23 0.0008 35.4 3.0 30 226-255 516-545 (585)
120 3rf1_A Glycyl-tRNA synthetase 32.8 88 0.003 27.9 6.2 80 9-93 41-126 (311)
121 2lju_A Putative oxidoreductase 32.4 32 0.0011 26.2 2.9 22 305-326 67-88 (108)
122 3rss_A Putative uncharacterize 32.3 1E+02 0.0034 30.1 7.4 59 264-322 52-110 (502)
123 3fwz_A Inner membrane protein 32.1 1.7E+02 0.0058 22.4 8.0 16 310-325 63-78 (140)
124 1l0w_A Aspartyl-tRNA synthetas 31.6 25 0.00087 35.1 3.0 30 226-255 510-539 (580)
125 2xwp_A Sirohydrochlorin cobalt 31.4 1.5E+02 0.0052 25.8 7.9 60 267-326 5-81 (264)
126 3or5_A Thiol:disulfide interch 31.2 1.8E+02 0.0061 22.3 8.4 67 285-370 84-153 (165)
127 3ju3_A Probable 2-oxoacid ferr 30.8 85 0.0029 23.8 5.4 100 264-368 13-117 (118)
128 2yxb_A Coenzyme B12-dependent 30.7 1.9E+02 0.0063 23.2 7.8 72 240-323 53-126 (161)
129 1req_A Methylmalonyl-COA mutas 30.2 94 0.0032 31.9 6.9 81 240-326 574-655 (727)
130 3h16_A TIR protein; bacteria T 30.1 38 0.0013 27.2 3.3 61 263-324 19-79 (154)
131 1wn2_A Peptidyl-tRNA hydrolase 30.1 1.5E+02 0.0051 22.8 6.6 54 284-340 47-103 (121)
132 2ibo_A Hypothetical protein SP 29.6 1.5E+02 0.0052 22.1 6.4 60 265-325 5-73 (104)
133 1jwq_A N-acetylmuramoyl-L-alan 29.2 1.3E+02 0.0044 24.8 6.6 52 276-328 30-82 (179)
134 1rlk_A Hypothetical protein TA 29.1 1.4E+02 0.0049 22.7 6.4 54 284-340 43-99 (117)
135 2jya_A AGR_C_3324P, uncharacte 29.0 37 0.0013 25.7 2.8 21 305-325 59-79 (106)
136 2du3_A O-phosphoseryl-tRNA syn 28.8 95 0.0032 30.6 6.4 74 179-253 253-338 (534)
137 1j5w_A Glycyl-tRNA synthetase 28.7 91 0.0031 27.6 5.6 76 9-92 29-113 (298)
138 3bju_A Lysyl-tRNA synthetase; 27.8 36 0.0012 33.5 3.3 20 236-255 474-493 (521)
139 2xvy_A Chelatase, putative; me 27.5 1.8E+02 0.0062 25.2 7.8 62 266-327 11-87 (269)
140 2xij_A Methylmalonyl-COA mutas 27.3 1.2E+02 0.004 31.3 7.0 81 241-327 583-664 (762)
141 1iuk_A Hypothetical protein TT 26.7 90 0.0031 24.5 5.0 51 264-321 70-120 (140)
142 3apt_A Methylenetetrahydrofola 26.4 2.2E+02 0.0074 25.7 8.1 80 245-329 28-110 (310)
143 2yxb_A Coenzyme B12-dependent 26.3 1.3E+02 0.0045 24.2 6.1 38 283-324 38-75 (161)
144 3rfq_A Pterin-4-alpha-carbinol 25.9 1.7E+02 0.0059 24.2 6.8 64 262-328 28-99 (185)
145 1ccw_A Protein (glutamate muta 24.4 1.6E+02 0.0055 22.8 6.1 40 282-325 22-61 (137)
146 1jq5_A Glycerol dehydrogenase; 22.9 1.6E+02 0.0054 27.1 6.7 73 244-327 46-119 (370)
147 3s4y_A Thiamin pyrophosphokina 22.8 2.8E+02 0.0094 24.1 7.9 37 216-252 24-60 (247)
148 1xov_A PLY protein, plypsa; al 22.8 1.5E+02 0.0051 27.2 6.3 53 276-328 39-93 (326)
149 2fvt_A Conserved hypothetical 22.2 35 0.0012 27.0 1.7 37 264-300 67-103 (135)
150 1vk8_A Hypothetical protein TM 22.2 2.5E+02 0.0086 21.0 6.4 60 265-325 18-86 (106)
151 3ne8_A N-acetylmuramoyl-L-alan 22.1 2.1E+02 0.0073 24.6 6.9 53 276-329 32-85 (234)
152 1mkz_A Molybdenum cofactor bio 21.9 3E+02 0.01 22.2 7.5 63 264-328 10-79 (172)
153 3ezx_A MMCP 1, monomethylamine 21.6 3.3E+02 0.011 22.9 8.0 56 264-324 92-149 (215)
154 2fi9_A Outer membrane protein; 21.5 38 0.0013 26.5 1.7 37 264-300 68-104 (128)
155 3pzy_A MOG; ssgcid, seattle st 21.3 2.5E+02 0.0086 22.6 6.9 62 264-328 7-76 (164)
156 3nrs_A Dihydrofolate:folylpoly 21.1 4.7E+02 0.016 24.5 9.8 71 223-299 15-86 (437)
157 1e1o_A Lysyl-tRNA synthetase, 21.1 41 0.0014 33.0 2.2 20 236-255 469-488 (504)
158 3noh_A Putative peptide bindin 21.1 1.2E+02 0.0042 23.4 4.4 54 265-324 62-115 (139)
159 1y80_A Predicted cobalamin bin 20.8 2.3E+02 0.0079 23.5 6.8 58 265-326 89-147 (210)
160 1yqh_A DUF77, IG hypothetical 20.7 2.7E+02 0.0094 20.9 7.0 61 265-325 10-79 (109)
161 2zv3_A PTH, peptidyl-tRNA hydr 20.6 2.2E+02 0.0076 21.5 6.0 55 283-340 40-97 (115)
162 2duw_A Putative COA-binding pr 20.5 1.5E+02 0.005 23.3 5.1 51 264-321 70-120 (145)
163 3jrn_A AT1G72930 protein; TIR 20.4 1.1E+02 0.0039 25.2 4.5 36 264-299 8-44 (176)
164 3ff4_A Uncharacterized protein 20.2 1.8E+02 0.0062 22.2 5.4 50 265-321 59-108 (122)
No 1
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=4.2e-71 Score=550.94 Aligned_cols=359 Identities=52% Similarity=0.911 Sum_probs=321.8
Q ss_pred CeEeeecCC-CceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHH
Q psy17090 1 MYSFIDELN-GDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAEL 79 (373)
Q Consensus 1 m~~f~D~~~-G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Ev 79 (373)
||+|.|+ + |+.++||||+|+|+||+++++......|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|+
T Consensus 94 my~~~D~-~~g~~l~LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEv 172 (467)
T 4e51_A 94 MYSFVDA-LNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEI 172 (467)
T ss_dssp CCEEECT-TTCCEEEECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHH
T ss_pred eEEEecC-CCCCEEEeCcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHH
Confidence 8999999 8 9999999999999999999876544689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHhhCh
Q psy17090 80 IIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAP 159 (373)
Q Consensus 80 i~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~ 159 (373)
|.++.++|+.||++++.|+|||.|+++++..++..|.+++.+..+. |++++.+++..+|++++|++++.+.+++..+|
T Consensus 173 i~l~~~~l~~lGl~~~~i~in~~g~~~~~~~~~~~l~~~l~~~~~~--l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~ 250 (467)
T 4e51_A 173 VMMCQRLWEDLGLTGIKLEINSLGLAEERAAHRVELIKYLEQHADK--LDDDAQRRLYTNPLRVLDTKNPALQEIVRNAP 250 (467)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEECCCHHHHHHHHHHHHHHHHTTGGG--CCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSC
T ss_pred HHHHHHHHHHcCCCceEEEEeCCCchhhhHHHHHHHHHHHHHHHhc--cCHHHHHHHHhchHHHhhccchhHHHHHhhhH
Confidence 9999999999999889999999999998888899999999876555 89999999999999999999888899999999
Q ss_pred hhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcCCCCCee
Q psy17090 160 KLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPAS 239 (373)
Q Consensus 160 ~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~pav 239 (373)
.+.+.++.+++++++.+.++|+.+|+++.|||+++|+++||||+||+++.++.|...+|++|||||+|++.|++++.|||
T Consensus 251 ~l~~~l~~~~~~~l~~l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~~~~Pav 330 (467)
T 4e51_A 251 KLIDFLGDVSRAHFEGLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAAC 330 (467)
T ss_dssp CGGGGCCHHHHHHHHHHHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTSSCCCEE
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCCeEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCCCCCCce
Confidence 99888888899999999999999999999999999999999999999999876655799999999999999998899999
Q ss_pred eeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEec----cCccccCHHHHHHHHH
Q psy17090 240 GFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCV----FNNIHESFKSQMKRAN 315 (373)
Q Consensus 240 Gfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~----~~~~~~sl~~~~~~a~ 315 (373)
||++++|||+.++.+.+.+|. .++++|+|++.++.....+.++++.||++|++|++++. + .++++++++|+
T Consensus 331 Gfa~gleRl~~~l~~~~~~~~-~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~----~sl~kq~~~A~ 405 (467)
T 4e51_A 331 GWAMGIERILELLKEEHLVPE-QEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAG----ASFKSQMKRAD 405 (467)
T ss_dssp EEEEEHHHHHHHHHHTTCCCC-CCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCTTSSC----CCHHHHHHHHH
T ss_pred eehHHHHHHHHHHHhcCCccc-CCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEccccccc----CCHHHHHHHHH
Confidence 999999999999988775432 56789999999888888999999999999999999988 6 89999999999
Q ss_pred HcCCCEEEEEccCcccCCeEEEEECCC-CCCCCCccceeecHHHHHHHHHHHH
Q psy17090 316 ASNANFAAIIGENEIINNTLIIKDLRN-KYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 316 ~~gi~~~vivg~~e~~~~~v~Vk~l~~-~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
+.|+||+|+||++|+++|+|+||++.+ +.++++.+|..|+++|++++|++.+
T Consensus 406 ~~g~~~~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 406 ASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp HTTCSEEEEECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred HcCCCEEEEECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 999999999999999999999999998 5334455789999999999999887
No 2
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=8.1e-68 Score=523.09 Aligned_cols=353 Identities=34% Similarity=0.602 Sum_probs=317.8
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAEL 79 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Ev 79 (373)
||+|.|+ +|+.++||||+|+|+||+++++... .+.|+|+||+|+|||+++|+.||.|||+|+|+|+||.+++.+|+|+
T Consensus 65 m~~~~D~-~g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~ 143 (421)
T 1h4v_B 65 MFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEA 143 (421)
T ss_pred eEEEECC-CCCEEeeCCcchHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHH
Confidence 7999999 9999999999999999999876432 3689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHh--h
Q psy17090 80 IIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILI--N 157 (373)
Q Consensus 80 i~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~--~ 157 (373)
|.++.++|+.+|++++.|++||+|..+++..++..+.+++....+. +++++.+++..++++++++.++...+++. .
T Consensus 144 i~~~~~~l~~lgl~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~--l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 221 (421)
T 1h4v_B 144 VVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREA--LSEDSKERLEENPMRILDSKSERDQALLKELG 221 (421)
T ss_pred HHHHHHHHHHcCCCceEEEEcCCCchhhHHHHHHHHHHHHHHHHhh--cCHHHHHHHHhcchHhhhcccHHHHHHHHhcC
Confidence 9999999999999889999999999888777777777777654333 67777777777777788877666677777 7
Q ss_pred ChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcCCCCC
Q psy17090 158 APKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVP 237 (373)
Q Consensus 158 ~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~p 237 (373)
+|++.+.++.+++++++++.++++.+|++++||++++|+++||||++|+++..+.|...+||+|||||+|++.|++++.|
T Consensus 222 ~~~l~~~l~~~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~p 301 (421)
T 1h4v_B 222 VRPMLDFLGEEARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVP 301 (421)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEecccccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCC
Confidence 78887766778889999999999999999999999999999999999999987656557999999999999999888999
Q ss_pred eeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHc
Q psy17090 238 ASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANAS 317 (373)
Q Consensus 238 avGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~ 317 (373)
|+||||++|||+.++.+.+..|++.+|++|+|++.+++....+.++++.||++ ++|++++.+ .++++++++|++.
T Consensus 302 a~Gf~igieRl~~~l~e~~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~~~----~~~~~~~~~a~~~ 376 (421)
T 1h4v_B 302 GVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAP----RKPAKGLEEALKR 376 (421)
T ss_pred eEEEeecHHHHHHHHHhcCcCCCCCCCCeEEEEECChHHHHHHHHHHHHHHhc-CEEEEecCC----CCHHHHHHHHHhC
Confidence 99999999999999988876666668899999999877788899999999999 999999887 8999999999999
Q ss_pred CCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 318 NANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 318 gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
|+||+|+||++|+++|+|+||++.++ ++..|+++|+++++.+.+
T Consensus 377 g~p~~iivG~~e~~~~~v~vk~~~~~------~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 377 GAAFAGFLGEDELRAGEVTLKRLATG------EQVRLSREEVPGYLLQAL 420 (421)
T ss_pred CCCEEEEECchHhhcCcEEEEECCCC------CceEECHHHHHHHHHHhh
Confidence 99999999999999999999999999 999999999999997654
No 3
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=1.5e-68 Score=528.72 Aligned_cols=354 Identities=46% Similarity=0.840 Sum_probs=280.1
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|.|+ +|+.++||||+|+|+||+++++..+.+.|+|+||+|+|||+++|+.||.|||+|+|+|+||.+++.+|+|+|
T Consensus 66 m~~~~D~-~g~~l~Lrpd~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i 144 (423)
T 1htt_A 66 MYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELI 144 (423)
T ss_dssp CEEEECT-TSCEEEECSCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHH
T ss_pred eEEEEcC-CCCEEEeCCCchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHH
Confidence 8999999 999999999999999999998765557899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCC-CceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHhhCh
Q psy17090 81 IMCSRLWKNLNL-KNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAP 159 (373)
Q Consensus 81 ~l~~~~l~~lg~-~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~ 159 (373)
.++.++|+.+|+ +++.|++||+|..++...++..+.+++....+. +++++.+++..++++++++.+....+++..+|
T Consensus 145 ~~~~~~l~~lgl~~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~ 222 (423)
T 1htt_A 145 MLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHKEK--LDEDCKRRMYTNPLRVLDSKNPEVQALLNDAP 222 (423)
T ss_dssp HHHHHHHHHHTCGGGCEEEEEECCCHHHHHHC------------------------------------------------
T ss_pred HHHHHHHHHCCCCCCcEEEEcCCCChhhHHHHHHHHHHHHHHHHhc--cCHHHHHHHHhchhHhhhcccHHHHHHHhcch
Confidence 999999999999 889999999999887766666666666542223 55666666666677777765555667777778
Q ss_pred hhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcCCCCCee
Q psy17090 160 KLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPAS 239 (373)
Q Consensus 160 ~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~pav 239 (373)
++.+.++.+++++++++.++|+.+|+.++||++++|+++||||++|+++..+.|...+||+|||||+|++.|+|++.|||
T Consensus 223 ~l~~~l~~~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~pav 302 (423)
T 1htt_A 223 ALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV 302 (423)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTTCCCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCCEE
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHcCCeEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCCeE
Confidence 87666667789999999999999999999999999999999999999998755555799999999999999988899999
Q ss_pred eeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHc--CCeEEEEeccCccccCHHHHHHHHHHc
Q psy17090 240 GFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTL--GLKVILNCVFNNIHESFKSQMKRANAS 317 (373)
Q Consensus 240 Gfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~--Gi~v~~~~~~~~~~~sl~~~~~~a~~~ 317 (373)
||||++|||+.++.+.+..|++.+|++|+|++.++.....+.++++.||++ |++|++++.+ .++++++++|++.
T Consensus 303 Gf~igveRl~~~l~e~~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~----~~~~~~~~~a~~~ 378 (423)
T 1htt_A 303 GFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGG----GNFKKQFARADKW 378 (423)
T ss_dssp EEEEEHHHHHHHHHHHSTTCCCCCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECCSC----CCHHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHhcCcCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeCCC----CCHHHHHHHHHHc
Confidence 999999999999998876666678899999998877788999999999999 9999999887 8999999999999
Q ss_pred CCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 318 NANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 318 gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
|+||+|++|++|+++|+|+||++.++ ++..|+++|+++++++.+
T Consensus 379 g~p~~iiiG~~e~~~~~v~vk~~~~~------~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 379 GARVAVVLGESEVANGTAVVKDLRSG------EQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp TCSEEEEECHHHHHHTEEEEEETTTC------CEEEEEHHHHHHHHHHHH
T ss_pred CCCEEEEECchhhhcCeEEEEECCCC------CceEEcHHHHHHHHHHhh
Confidence 99999999999999999999999999 999999999999997654
No 4
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=1.1e-66 Score=516.74 Aligned_cols=333 Identities=20% Similarity=0.320 Sum_probs=260.4
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|.|+ +|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|+|
T Consensus 88 my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi 166 (456)
T 3lc0_A 88 MFNFITK-GGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELV 166 (456)
T ss_dssp CEEEECS-SSCEEEECSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHH
T ss_pred eEEEEcC-CCCEEecCCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHH
Confidence 8999999 999999999999999999998866556899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCC--CceEEEeCCCcChhhHHH-------HHHHHHHHHHhcccc------------ccccHHHHHHhhhc
Q psy17090 81 IMCSRLWKNLNL--KNICLELNSIGNFNERKK-------YCIDLINYIKKHKDS------------KWFCEDIKHSLYLN 139 (373)
Q Consensus 81 ~l~~~~l~~lg~--~~~~i~i~~~~~~~~~~~-------~~~~l~~~l~~~~~~------------~~l~~~~~~~l~~~ 139 (373)
.++.++|+.+|+ +++.|+|||+++++.... ....+...+.+. ++ .+++++..+++.
T Consensus 167 ~l~~~~l~~lgl~~~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl-~~~~~~~~~~~L~~~~l~~~~~~~l~-- 243 (456)
T 3lc0_A 167 CAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKM-EKIPREEVEAQLAVLGLEPTVVDAIT-- 243 (456)
T ss_dssp HHHHHHHHHTTCCTTTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTT-TTSCHHHHHHHHHHTTCCHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCCceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cccCHHHHHHHHHHcCCCHHHHHHHH--
Confidence 999999999999 789999999877665321 122222333221 11 112222222221
Q ss_pred hhhhhcccChhHHHHHhhChhhHhhhh--HhHHHHHHHHHHHHHhCCCc--EEEecCCCCCCCCccceEEEEEeCCCCCc
Q psy17090 140 SLRVLDSKNLIIREILINAPKLLDYLE--KDSLDHFYGIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQ 215 (373)
Q Consensus 140 ~~~~l~~~~~~~~~~l~~~~~l~~~~~--~~~~~~l~~l~~~l~~~g~~--i~~D~~~~r~~~YYtG~vFe~~~~~~g~~ 215 (373)
++++.. .++.+.+.++ .+++++|+++.++|+.+|+. +.|||+++||++||||+|||+|.+. |..
T Consensus 244 --~~~~~~---------~~~~l~~~l~~~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~-g~~ 311 (456)
T 3lc0_A 244 --TTLSLK---------SIDEIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDRE-GKF 311 (456)
T ss_dssp --HHHTCC---------SHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETT-SCS
T ss_pred --HHhccC---------CHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECC-CCc
Confidence 111111 1122222221 24688999999999999996 9999999999999999999999764 334
Q ss_pred cceeccCccchhHHhhcCC-CCCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeE
Q psy17090 216 NSICGGGRYDFLIKKFSNK-FVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKV 294 (373)
Q Consensus 216 ~~ia~GGRYD~L~~~f~~~-~~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v 294 (373)
.+||+|||||+|++.||++ +.||||||+++|||+.++.+.+..++...+++|+|++.+++...+++++|+.||++|++|
T Consensus 312 ~~I~~GGRYD~Lv~~fg~~~~~PavGFaig~eRl~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~v 391 (456)
T 3lc0_A 312 RALCGGGRYDNLLTTYGSPTPIPCAGFGFGDCVIVELLQEKRLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSA 391 (456)
T ss_dssp SCSEEEEECSSHHHHTTCSSCCCEEEEEEESSHHHHHHHHTTCCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCE
T ss_pred ceEeecccHHHHHHHhCCCCCCCEEEEEeEHHHHHHHHHhcCCCCccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeE
Confidence 7999999999999999987 799999999999999999887654433456899999999888899999999999999999
Q ss_pred EEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHH
Q psy17090 295 ILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDA 359 (373)
Q Consensus 295 ~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el 359 (373)
++++.+ .++++++++|++.|++|+|++|++|+++|+|+|||+.++ +|..+++++.
T Consensus 392 e~~~~~----~slkkq~k~A~k~ga~~vviiGe~E~~~g~v~vK~l~tg------eQ~~~~~~~~ 446 (456)
T 3lc0_A 392 DIILDK----KKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREG------TGKEEGGAER 446 (456)
T ss_dssp EECCSC----CCHHHHHHHHHHTTEEEEEEECHHHHHTTEEEEEECC------------------
T ss_pred EEecCC----CCHHHHHHHHHHcCCCEEEEECCchhcCCeEEEEECCCC------CeEEeccccc
Confidence 999987 899999999999999999999999999999999999999 8888887664
No 5
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=1.3e-66 Score=518.86 Aligned_cols=346 Identities=21% Similarity=0.333 Sum_probs=268.8
Q ss_pred CeEeeecC--------------CCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEE
Q psy17090 1 MYSFIDEL--------------NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVE 66 (373)
Q Consensus 1 m~~f~D~~--------------~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~e 66 (373)
||+|.|+. +|+.++||||+|+|+||++++|....+.|+|+||+|+|||+++|+.||+|||+|+|+|
T Consensus 70 m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~e 149 (465)
T 3net_A 70 IYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDID 149 (465)
T ss_dssp EEEEEEEC----------------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEE
T ss_pred eEEEecccccccccccccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEE
Confidence 79999982 2899999999999999999988654568999999999999999999999999999999
Q ss_pred EEcCCCchh--hHHHHHHHHHHHHHCCCCceEEEeCCCcChhhHH-------HHHHHHHHHHHhcccc------------
Q psy17090 67 AIGFPGPDI--DAELIIMCSRLWKNLNLKNICLELNSIGNFNERK-------KYCIDLINYIKKHKDS------------ 125 (373)
Q Consensus 67 iig~~~~~~--d~Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~-------~~~~~l~~~l~~~~~~------------ 125 (373)
+||.+++.+ |+|+|.++.++|+.+|++++.|+|||++++.... .+...+...+.++ ++
T Consensus 150 i~G~~~~~a~~DaEvi~l~~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~-~~~~~~~~~~~l~~ 228 (465)
T 3net_A 150 VVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNL-EKIGEAKVKLELEK 228 (465)
T ss_dssp EECSSCCCHHHHHHHHHHHHHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTH-HHHHHHHHHHHHHH
T ss_pred EECCCCccchhhHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-cccCHHHHHHHHHh
Confidence 999999999 9999999999999999999999999987765431 1223343443321 11
Q ss_pred ccccHHHHHHhhhchhhhhcccChhHHHHHhhChhhH---h--hhhHhHHHHHHHHHHHHHhC-CCc----EEEecCCCC
Q psy17090 126 KWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLL---D--YLEKDSLDHFYGIQKILNYN-NIS----YKINTKLVR 195 (373)
Q Consensus 126 ~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~l~---~--~~~~~~~~~l~~l~~~l~~~-g~~----i~~D~~~~r 195 (373)
.+++++....+. .++.-.. +..+.+..+..+. . ....+++++|+++. |+.+ .-. ++|||+++|
T Consensus 229 ~~l~~~~~~~l~----~l~~~~g-~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~--l~~~~~~~~~~~~~~D~~lvr 301 (465)
T 3net_A 229 EGINPEQTQKII----DFVKIDG-SVDDVLDKLKHLSQTLPESEQFNLGVSELETVI--TGVRNLGVPDKRFCIDLAIAR 301 (465)
T ss_dssp TTCCHHHHHHHH----HHHTCCS-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--HHHHHTTCCGGGEEECTTCCC
T ss_pred cCCCHHHHHHHH----HHHHhcC-ChHHHHHHHHHhhhccccChHHHHHHHHHHHHH--HHHhcccccCceEEEccCccC
Confidence 122222222221 1111110 0112222221221 0 11235667777776 4443 116 999999999
Q ss_pred CCCCccceEEEEEeCCCCCccceeccCccchhHHhh-cCCCCCeeeeechHHHHHHHHHhhcCCCC-CCCCceEEEEEcC
Q psy17090 196 GMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKF-SNKFVPASGFAIGIERLIELIKKININHN-FSHQCDIYIVHVG 273 (373)
Q Consensus 196 ~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f-~~~~~pavGfai~le~l~~~l~~~~~~~~-~~~~~~v~v~~~~ 273 (373)
|++||||+|||+|.++.+...+||+|||||+|+++| |++ .||||||||+|||+.++.+.+.+|. +.++++|+|++.+
T Consensus 302 gldYYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~g~~-~pavGfaiGieRli~~L~e~g~~p~~~~~p~~V~Vi~~~ 380 (465)
T 3net_A 302 GLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEK-MPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQ 380 (465)
T ss_dssp CSSSEEEEEEEEEETTCGGGCCSSEEEEESSSSGGGTCSC-CCEEEEEEEHHHHHHHHHHTTSSCCCCSCSCCEEECCSC
T ss_pred CCcccCceEEEEEECCCCccceecccccHHHHhhhhcCCC-CceeeeeccHHHHHHHHHHcCCCCCcCCCCCeEEEEEcC
Confidence 999999999999998755456999999999999966 654 9999999999999999999887664 5788999999998
Q ss_pred chhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCC-eEEEEECCCCCCCCCccce
Q psy17090 274 KEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINN-TLIIKDLRNKYEDPTLKQI 352 (373)
Q Consensus 274 ~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~-~v~Vk~l~~~~~~~~~~~~ 352 (373)
+.....++++++.||++|++|++++.+ .++++++++|++.|+||+|+||++ +++| +|+||++.++ +|.
T Consensus 381 ~~~~~~A~~la~~LR~~Gi~ve~d~~~----~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~------eq~ 449 (465)
T 3net_A 381 DELMPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSG------EQV 449 (465)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEECCSC----CCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTT------EEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCC----CCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEECCCC------ceE
Confidence 888899999999999999999999987 899999999999999999999999 8899 9999999999 999
Q ss_pred eecHHHHHHHHHHH
Q psy17090 353 SISFKDAENYFYKK 366 (373)
Q Consensus 353 ~v~~~el~~~l~~~ 366 (373)
.|+++|++++|++.
T Consensus 450 ~v~~~el~~~l~~~ 463 (465)
T 3net_A 450 EVALADLAEEIKRR 463 (465)
T ss_dssp ECC-CCHHHHHHHT
T ss_pred EeeHHHHHHHHHHh
Confidence 99999999999764
No 6
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=3.9e-65 Score=515.56 Aligned_cols=352 Identities=21% Similarity=0.340 Sum_probs=274.3
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCC--CCCCCcceeeeEEEEEcCCC-chhhH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERP--QYGRYRQFYQIGVEAIGFPG-PDIDA 77 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~--~~gr~ref~Q~g~eiig~~~-~~~d~ 77 (373)
||+|.|+ +|+.++||||+|+|+||++++|.. .|+|+||+|+|||+++| ++||+|||+|+|+|+||..+ ..+|+
T Consensus 125 my~f~D~-~g~~l~LRPd~T~~~aR~~~~~~~---~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDa 200 (517)
T 4g85_A 125 IYDLKDQ-GGELLSLRYDLTVPFARYLAMNKL---TNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDA 200 (517)
T ss_dssp SCBBCCT-TSCCEEECSCSHHHHHHHHHHTTC---SCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHH
T ss_pred eEEEECC-CCCEEEeCCcCcHHHHHHHHhCCC---CCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHH
Confidence 7999999 999999999999999999998753 69999999999999999 46999999999999999765 45899
Q ss_pred HHHHHHHHHHHHCCCCceEEEeCCCcChhhHHH-------HHHHHHHHHHhcccccc-------------ccHHHHHHhh
Q psy17090 78 ELIIMCSRLWKNLNLKNICLELNSIGNFNERKK-------YCIDLINYIKKHKDSKW-------------FCEDIKHSLY 137 (373)
Q Consensus 78 Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~-------------l~~~~~~~l~ 137 (373)
|+|.++.++|+.+|++++.++|||.++++.+.+ ....+...+.+. +... ++++..+++.
T Consensus 201 Evi~l~~~~l~~lgl~~~~i~in~~~~l~~~~~~~~~~~~~~~~~~~~ld~l-dk~~~~~~~~~l~~~~~~~~~~~~~l~ 279 (517)
T 4g85_A 201 ECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKL-DKVSWEEVKNEMVGEKGLAPEVADRIG 279 (517)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHHTT-TTSCHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcccccccchhhHHHHHHhhcchHHHHHHHHHHHhhh-cchhHHHHHHHHHhhcCCCHHHHHHHH
Confidence 999999999999999999999999988765422 223333344332 2211 1111111111
Q ss_pred hchhhhhcccChhHHHHHhhChhhH-hhhhHhHHHHHHHHHHHHHhCCC--cEEEecCCCCCCCCccceEEEEEeCCCCC
Q psy17090 138 LNSLRVLDSKNLIIREILINAPKLL-DYLEKDSLDHFYGIQKILNYNNI--SYKINTKLVRGMDYYNRTVFEWTTDKLGS 214 (373)
Q Consensus 138 ~~~~~~l~~~~~~~~~~l~~~~~l~-~~~~~~~~~~l~~l~~~l~~~g~--~i~~D~~~~r~~~YYtG~vFe~~~~~~g~ 214 (373)
... -+......+..++ ..+.+. ...+.+++++|+.+.++|+.+|+ ++.|||+++||++||||+|||++..+.+.
T Consensus 280 ~~~--~~~g~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~ 356 (517)
T 4g85_A 280 DYV--QQHGGVSLVEQLL-QDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPA 356 (517)
T ss_dssp HHH--HCCBSHHHHHHHH-HCHHHHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC----
T ss_pred HHH--HhcCCchHHHHHH-hcccccccHHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCccc
Confidence 000 0000001111222 222221 12335678899999999999988 49999999999999999999999765432
Q ss_pred c--------cceeccCccchhHHhh--cCCCCCeeeeechHHHHHHHHHhhc---CCCCCCCCceEEEEEcCchhHHHHH
Q psy17090 215 Q--------NSICGGGRYDFLIKKF--SNKFVPASGFAIGIERLIELIKKIN---INHNFSHQCDIYIVHVGKEAELKAF 281 (373)
Q Consensus 215 ~--------~~ia~GGRYD~L~~~f--~~~~~pavGfai~le~l~~~l~~~~---~~~~~~~~~~v~v~~~~~~~~~~~~ 281 (373)
+ .+||+|||||+|++.| +|+++||||||+++|||+.++.+.+ ..+.+..+++|+|++.++....+++
T Consensus 357 ~~~~~~~~~~~i~~GGRYD~Lv~~f~~~G~~~pavGfa~gierl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~ 436 (517)
T 4g85_A 357 QAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERL 436 (517)
T ss_dssp ---------CCSEEEEECHHHHHTTSSSCCCCCEEEEEECHHHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHH
T ss_pred ccccCCcccceecCCCchhHHHHHhccCCCCCCcccccchHHHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHH
Confidence 2 4899999999999999 4688999999999999999998753 2233467789999999888889999
Q ss_pred HHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHH
Q psy17090 282 VLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAEN 361 (373)
Q Consensus 282 ~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~ 361 (373)
++++.||++|++|++++..+ .++++++++|++.|+||+||||++|+++|+|+|||+.++ +|..|+++|+++
T Consensus 437 ~l~~~Lr~~Gi~ve~~~~~~---~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tg------eq~~v~~~elv~ 507 (517)
T 4g85_A 437 KLVSELWDAGIKAELLYKKN---PKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSR------EEVDVRREDLVE 507 (517)
T ss_dssp HHHHHHHHTTCCEEECSSSS---CCHHHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTC------CEEEEEHHHHHH
T ss_pred HHHHHHHHCCCcEEEEeCCC---CCHHHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCC------CeEEeeHHHHHH
Confidence 99999999999999987642 699999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHh
Q psy17090 362 YFYKKIIK 369 (373)
Q Consensus 362 ~l~~~~~~ 369 (373)
+|++.+.+
T Consensus 508 ~lk~~l~~ 515 (517)
T 4g85_A 508 EIKRRTGQ 515 (517)
T ss_dssp HHHHHCC-
T ss_pred HHHHHhcC
Confidence 99988765
No 7
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=4e-65 Score=509.91 Aligned_cols=351 Identities=21% Similarity=0.346 Sum_probs=276.2
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCC--CCCCcceeeeEEEEEcCCC-chhhH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQ--YGRYRQFYQIGVEAIGFPG-PDIDA 77 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~--~gr~ref~Q~g~eiig~~~-~~~d~ 77 (373)
||+|.|+ +|+.++||||+|+|+||++++|.. .|+|+||+|+|||+++|+ .||+|||+|+|+|+||..+ ..+|+
T Consensus 72 ~y~f~D~-~g~~l~LRPd~T~~~aR~~~~~~~---~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDa 147 (464)
T 4g84_A 72 IYDLKDQ-GGELLSLRYDLTVPFARYLAMNKL---TNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDA 147 (464)
T ss_dssp CCBBCCC-SSCCEEECSCSHHHHHHHHHHTTC---SCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHH
T ss_pred eEEEECC-CCCEEEeCCcCcHHHHHHHHhcCC---CCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHH
Confidence 7999999 999999999999999999998753 699999999999999994 5799999999999999755 46899
Q ss_pred HHHHHHHHHHHHCCCCceEEEeCCCcChhhHHH-------HHHHHHHHHHhccccc-------------cccHHHHHHhh
Q psy17090 78 ELIIMCSRLWKNLNLKNICLELNSIGNFNERKK-------YCIDLINYIKKHKDSK-------------WFCEDIKHSLY 137 (373)
Q Consensus 78 Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~-------~~~~l~~~l~~~~~~~-------------~l~~~~~~~l~ 137 (373)
|+|.++.++|+.+|++++.++|||.++++...+ ....+...+.+. +.. +++++..+++.
T Consensus 148 Evi~l~~~~l~~lgl~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~~l~~~~~~~~~~~~~l~ 226 (464)
T 4g84_A 148 ECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKL-DKVSWEEVKNEMVGEKGLAPEVADRIG 226 (464)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGG-GTSCHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHh-chhhHHHHHHHHHhhcCCCHHHHHHHH
Confidence 999999999999999999999999988765422 223333344332 221 11111111111
Q ss_pred hchhhhhccc-ChhHHHHHhhChhhH-hhhhHhHHHHHHHHHHHHHhCCC--cEEEecCCCCCCCCccceEEEEEeCCCC
Q psy17090 138 LNSLRVLDSK-NLIIREILINAPKLL-DYLEKDSLDHFYGIQKILNYNNI--SYKINTKLVRGMDYYNRTVFEWTTDKLG 213 (373)
Q Consensus 138 ~~~~~~l~~~-~~~~~~~l~~~~~l~-~~~~~~~~~~l~~l~~~l~~~g~--~i~~D~~~~r~~~YYtG~vFe~~~~~~g 213 (373)
. .+... .....+.+...+.+. .....+++++|+.+.++|+.+|+ ++.||++++||++||||+|||++..+.+
T Consensus 227 ~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~ 302 (464)
T 4g84_A 227 D----YVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTP 302 (464)
T ss_dssp H----HHTCEESHHHHHHHTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC
T ss_pred H----HHHhcCCchHHHHHHhcccccccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcc
Confidence 0 00000 001111111222221 12334678899999999999988 4999999999999999999999976443
Q ss_pred Cc--------cceeccCccchhHHhhc--CCCCCeeeeechHHHHHHHHHhhcCC---CCCCCCceEEEEEcCchhHHHH
Q psy17090 214 SQ--------NSICGGGRYDFLIKKFS--NKFVPASGFAIGIERLIELIKKININ---HNFSHQCDIYIVHVGKEAELKA 280 (373)
Q Consensus 214 ~~--------~~ia~GGRYD~L~~~f~--~~~~pavGfai~le~l~~~l~~~~~~---~~~~~~~~v~v~~~~~~~~~~~ 280 (373)
.+ .+||+|||||+|++.|+ |+++||||||+++|||+.++.+.+.. +.+..+++|+|++.++....++
T Consensus 303 ~~~~~~~~~~~~i~~GGRYD~L~~~~~~~g~~~pavGfaigieRl~~~l~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~a 382 (464)
T 4g84_A 303 AQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEER 382 (464)
T ss_dssp -------EEEEEEEEEEECCSTGGGTSTTCCCCCEEEEEECHHHHHHHHHHHHHTTTCCCCSCCCCEEEECSSSSCHHHH
T ss_pred cccccCCcccceeccCCchhHHHHHhccCCCCCCCccccccHHHHHHHHHHhccccCcccccccceEEEEeCCHHHHHHH
Confidence 22 48999999999999995 67899999999999999999876422 2245678999999988888999
Q ss_pred HHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHH
Q psy17090 281 FVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAE 360 (373)
Q Consensus 281 ~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~ 360 (373)
+++++.||++|++|++++..+ .++++++++|++.|+||+||||++|+++|+|+|||+.++ +|..|+++|++
T Consensus 383 ~~l~~~Lr~~Gi~ve~~~~~~---~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tg------eq~~v~~~elv 453 (464)
T 4g84_A 383 LKLVSELWDAGIKAELLYKKN---PKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSR------EEVDVRREDLV 453 (464)
T ss_dssp HHHHHHHHHTTCCEECCSCSS---CCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTC------CEEEEEGGGHH
T ss_pred HHHHHHHHHCCCcEEEEeCCC---CCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCC------CeEEeeHHHHH
Confidence 999999999999999987542 689999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHh
Q psy17090 361 NYFYKKIIK 369 (373)
Q Consensus 361 ~~l~~~~~~ 369 (373)
++|++.+.+
T Consensus 454 ~~lk~~l~~ 462 (464)
T 4g84_A 454 EEIKRRTGQ 462 (464)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcC
Confidence 999998865
No 8
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=3.9e-65 Score=505.57 Aligned_cols=346 Identities=26% Similarity=0.438 Sum_probs=295.8
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|.|+ +|+.++||||+|+|+||++++++. .+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|+|
T Consensus 65 m~~~~D~-~g~~l~LrPd~t~~~aR~~~~~~~-~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i 142 (434)
T 1wu7_A 65 TYSFVDK-GGREVTLIPEATPSTVRMVTSRKD-LQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVI 142 (434)
T ss_dssp SCEEECT-TSCEEEECSCSHHHHHHHHTTCTT-CCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHH
T ss_pred eEEEECC-CCCEEEeCCCChHHHHHHHHhcCC-CCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHH
Confidence 8999999 999999999999999999987732 26899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCc-eEEEeCCCcChhhHH------HHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHH
Q psy17090 81 IMCSRLWKNLNLKN-ICLELNSIGNFNERK------KYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIRE 153 (373)
Q Consensus 81 ~l~~~~l~~lg~~~-~~i~i~~~~~~~~~~------~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~ 153 (373)
.++.++|+.+|+++ +.|++||.|+++.+. .+. .+.+++.+.... .++++..++..++++ ++..+.+.+
T Consensus 143 ~~~~~~l~~lgl~~~~~i~l~~~g~~~~~~~~~g~~~~~-~l~~~l~~~~~~--~~~~~~~~l~~~~l~--~~~~~~~~~ 217 (434)
T 1wu7_A 143 ALASSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSDPF-SVFSIIDRYHKI--SREEFVDQLRSAGIG--EDGVSMIAD 217 (434)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEEHHHHHHHHHTTCSSCHH-HHHHHHHTTTTS--CHHHHHHHHHHTTCC--HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCceEEEECChhhHHHHHHHhCcHhHH-HHHHHHHHHhcc--chHHHHHHHHhCCCC--HHHHHHHHH
Confidence 99999999999987 999999998776543 223 567777765222 334444444443332 222234455
Q ss_pred HHhhChhhHhhhh------HhHHHHHHHHHHHHHhCCCc-EEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccch
Q psy17090 154 ILINAPKLLDYLE------KDSLDHFYGIQKILNYNNIS-YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDF 226 (373)
Q Consensus 154 ~l~~~~~l~~~~~------~~~~~~l~~l~~~l~~~g~~-i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~ 226 (373)
++...|++.+ ++ .+++++++++.++|+.+|+. ++||++++|+++||||++|+++... |...+|++|||||+
T Consensus 218 ~~~~~~~~~~-l~~~~~~~~~~~~~l~~~~~~l~~~g~~~i~~D~~l~rgldYYtg~vFe~~~~~-g~~~~v~~GGRYD~ 295 (434)
T 1wu7_A 218 LCSGTRGIDE-MARITGKSSEEIARMAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYDRS-GQFRAILGGGRYDN 295 (434)
T ss_dssp HHHSCBCHHH-HHHHTTCCCHHHHHHHHHHHHHHHTTCCCCEECTTCCTTTTTCSSEEEEEEETT-SSCSCSSEEEECTT
T ss_pred HHHhCCCHHH-HHHHHhhHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCccccCCeEEEEEECC-CCcCeeeecccHHH
Confidence 6655666544 43 46889999999999999998 9999999999999999999999863 33479999999999
Q ss_pred hHHhhcCCCCCeeeeechHHHHHHHHHhhcCC-CCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCcccc
Q psy17090 227 LIKKFSNKFVPASGFAIGIERLIELIKKININ-HNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHE 305 (373)
Q Consensus 227 L~~~f~~~~~pavGfai~le~l~~~l~~~~~~-~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~ 305 (373)
|++.|+|++.||+||||++|||+.++.+.+.+ |+ +|++|+|++.+++....+.++++.||++|++|++++.+ .
T Consensus 296 li~~fgg~~~pa~Gf~igveRl~~~l~e~~~~~p~--~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~----~ 369 (434)
T 1wu7_A 296 LASLMSGESVPAVGFGMGDAVISLLLKRENVQIPR--EKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIME----R 369 (434)
T ss_dssp HHHHHHSCCCCEEEEEEEHHHHHHHHHHTTCCCCC--SSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSC----C
T ss_pred HHHHhCCCCCCeEEEEEcHHHHHHHHHhcCCccCC--CCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCC----C
Confidence 99999888999999999999999999988765 43 57899999998777889999999999999999999887 8
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 306 SFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 306 sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
++++++++|++.|+|++|++|++|+++|+|+||++.++ ++..|+++|+++++++.+
T Consensus 370 ~~~~~~~~a~~~g~~~~iiiG~~e~~~g~v~vk~~~~~------~~~~v~~~el~~~l~~~~ 425 (434)
T 1wu7_A 370 GLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTG------SQENVGLDSVVEHLISQA 425 (434)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTC------CEEEEEGGGHHHHHHHCC
T ss_pred CHHHHHHHHHHCCCCEEEEECchhhhcCeEEEEECCCC------CeEEEcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 999999999999997654
No 9
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=8e-64 Score=494.43 Aligned_cols=351 Identities=36% Similarity=0.640 Sum_probs=299.5
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC--CCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI--YDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAE 78 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~--~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~E 78 (373)
||+|.|+ +|+.++||||+|+|++|+++++... .++|+|+||+|+|||+|+|+.||.|||+|+|+|+||.+++.+|+|
T Consensus 64 m~~~~D~-~g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e 142 (420)
T 1qe0_A 64 MYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAE 142 (420)
T ss_dssp CEEECHH-HHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHH
T ss_pred eEEEEcC-CCCEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHH
Confidence 7999999 9999999999999999999876543 368999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHhhC
Q psy17090 79 LIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINA 158 (373)
Q Consensus 79 vi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~ 158 (373)
+|.++.++|+.||++++.+++||+|..+++..++..+.+++....+. +++++.+++..++++++++......+++..+
T Consensus 143 ~i~~~~~~l~~lgl~~~~i~l~~~g~~~~~~~~~~~l~~~~~~~~~~--l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a 220 (420)
T 1qe0_A 143 VLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHE--FCSDCQSRLHTDPMRILDCKVDRDKEAIKTA 220 (420)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEEECCCHHHHHHHHHHHHHHHGGGGGG--SCHHHHHTTTTCGGGGC------------CC
T ss_pred HHHHHHHHHHHcCCCceEEEEcccCchhhHHHHHHHHHHHHHHHHhh--hCHHHHHHHHhcchhhhcccchhHHHHHhhc
Confidence 99999999999999889999999999988888888888888765444 7888888887788888877665567778878
Q ss_pred hhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCC---CCccceeccCccchhHHhhcCCC
Q psy17090 159 PKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKL---GSQNSICGGGRYDFLIKKFSNKF 235 (373)
Q Consensus 159 ~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~---g~~~~ia~GGRYD~L~~~f~~~~ 235 (373)
|.+.+.++.+++++++.+.+.|+.+|+.+.+|++++|+++||||++|+++.++. |...+|++|||||+|++.|++++
T Consensus 221 ~~l~~~l~~~~~~~l~~l~~~l~~~gi~~~~d~~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~ 300 (420)
T 1qe0_A 221 PRITDFLNEESKAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPS 300 (420)
T ss_dssp CCGGGCCCTTHHHHHHHHHHHHHHHTCCCEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTCCC
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHcCCeEEECcccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCCCC
Confidence 887776677788999999999999999999999999999999999999998765 54469999999999999998888
Q ss_pred CCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHH
Q psy17090 236 VPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRAN 315 (373)
Q Consensus 236 ~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~ 315 (373)
.|||||++++|||+.++...+..+|..+|++|+|++.++.....+.++++.||++|++|++++.+ .++++++++|+
T Consensus 301 ~P~vg~~igveRl~~~le~~~~~~p~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~ 376 (420)
T 1qe0_A 301 ETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQ----RKIKGQMKQAD 376 (420)
T ss_dssp CEEEEEEEEHHHHHHHHHHTTCCCCCCCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSC----CCHHHHHHHHH
T ss_pred CCEEEEEecHHHHHHHHHhcCCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHH
Confidence 99999999999999999665533222577899999987777788999999999999999999877 89999999999
Q ss_pred HcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHH
Q psy17090 316 ASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFY 364 (373)
Q Consensus 316 ~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~ 364 (373)
+.|+||+|+||++|+++|+|+||++.++ ++..|+++|++++++
T Consensus 377 ~~g~p~~iiig~~e~~~~~v~vk~~~~~------~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 377 RLGAKFTIVIGDQELENNKIDVKNMTTG------ESETIELDALVEYFK 419 (420)
T ss_dssp HTTCSEEEEECHHHHHHTCEEEEETTTC------CEEEECTTHHHHHHH
T ss_pred HcCCCEEEEECcchhhcCeEEEEECCCC------CeEEEcHHHHHHHHh
Confidence 9999999999999999999999999999 999999999999885
No 10
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=2e-59 Score=457.41 Aligned_cols=308 Identities=26% Similarity=0.343 Sum_probs=250.8
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|.|+ +|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|+|
T Consensus 68 my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi 146 (400)
T 3od1_A 68 LFKLLDQ-QGNTLVLRPDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVI 146 (400)
T ss_dssp SCEEECT-TSCEEEECSCSHHHHHHHHHHHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHH
T ss_pred eEEEECC-CCCEEEECCCCHHHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHH
Confidence 8999999 999999999999999999998754456899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhH-------HHHHHHHHHHHHhcc--------ccccccHHHHHHhhhchhhhhc
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNER-------KKYCIDLINYIKKHK--------DSKWFCEDIKHSLYLNSLRVLD 145 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~-------~~~~~~l~~~l~~~~--------~~~~l~~~~~~~l~~~~~~~l~ 145 (373)
.++.++|+.+|++++.|+|||.++++.+ ..++..+.+++.++. +..+|++++.+++..+|. +.
T Consensus 147 ~l~~~~l~~lgl~~~~i~l~~~~i~~~ll~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~--~~ 224 (400)
T 3od1_A 147 ALMIAALKRAGLSEFKVAIGHVGYVNALLMDVVGNEQRADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLMNLLS--LR 224 (400)
T ss_dssp HHHHHHHHHTTCCSEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHTTCHHHHHHHHHHSSSCHHHHHHHHHGGG--CE
T ss_pred HHHHHHHHHCCCCceEEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHHHHHHhcCCCHHHHHHHHHHHh--cc
Confidence 9999999999999999999999987653 234666777776541 113467777777665543 11
Q ss_pred ccChhHHHHHhhChhhHh-hhhHhHHHHHHHHHHHHHhCCCc--EEEecCCCCCCCCccceEEEEEeCCCCCccceeccC
Q psy17090 146 SKNLIIREILINAPKLLD-YLEKDSLDHFYGIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGG 222 (373)
Q Consensus 146 ~~~~~~~~~l~~~~~l~~-~~~~~~~~~l~~l~~~l~~~g~~--i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GG 222 (373)
+..++++.++.+.. ..+.+++++|+++.++|+.+|+. +.|||+++||++||||+|||+|.++.| .+||+||
T Consensus 225 ----g~~~~l~~~~~l~~~~~~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~~~~g--~~i~~GG 298 (400)
T 3od1_A 225 ----GGRAAIEEARGLIQTEKGKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNRLG--VPLCSGG 298 (400)
T ss_dssp ----ESHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEETTCS--SEEEEEE
T ss_pred ----CCHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHcCCCceEEEeCCccCCCcccCCeEEEEEECCCC--Ceeeccc
Confidence 12346666666542 45578899999999999999986 999999999999999999999998766 6999999
Q ss_pred ccchhHHhhcCCCCCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCc
Q psy17090 223 RYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNN 302 (373)
Q Consensus 223 RYD~L~~~f~~~~~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~ 302 (373)
|||+|++.||+ +.||||||+++|||+.++.+.+..++ .++|+|+ .+++...+++++|+.||++|++|++...+
T Consensus 299 RYD~L~~~fG~-~~pavGfaiglerL~~~l~~~~~~~~---~~~v~v~-~~~~~~~~a~~~a~~LR~~G~~v~~~~~~-- 371 (400)
T 3od1_A 299 RYDELLSKFHR-PAQATGFGVRIDLLVEALNGEIISNG---HEQTCIL-FSNERRFEAIELARKKRANGEAVVLQDLA-- 371 (400)
T ss_dssp ECTTHHHHTTC-CCCEEEEEEEHHHHHHHHCC---------CCCEEEE-ECGGGHHHHHHHHHHHHTTTCCEEEEEGG--
T ss_pred ccchhhhccCC-CCCEEEEEeeHHHHHHHHHhcCCCCC---CCeEEEE-ECcHHHHHHHHHHHHHHHCCCEEEEEecC--
Confidence 99999999985 59999999999999999876554321 2346655 66777889999999999999999999875
Q ss_pred cccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 303 IHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 303 ~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
.. ... +|...|++.++++...+
T Consensus 372 --~~-~~~--~~~~~~~~~~~~~~~~~ 393 (400)
T 3od1_A 372 --GV-TDV--DAMSSNYQDVIYCIGTA 393 (400)
T ss_dssp --GC-SCH--HHHHTTSSEEEEECSCC
T ss_pred --Ch-hHH--HHHHcCCCEEEEEecCC
Confidence 22 222 99999999999998765
No 11
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=3.2e-52 Score=403.03 Aligned_cols=250 Identities=21% Similarity=0.289 Sum_probs=198.5
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCC------CCCCCcceeeeEEEEEcCC-Cc
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERP------QYGRYRQFYQIGVEAIGFP-GP 73 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~------~~gr~ref~Q~g~eiig~~-~~ 73 (373)
||+|.|+ +|+.++||||+|+|+||+++++......|+|+||+|+|||+++| +.||+|||+|+|+|+||.+ ++
T Consensus 82 my~~~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~ 160 (373)
T 3rac_A 82 WIRLFDG-GGDAVALRPEMTPSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASV 160 (373)
T ss_dssp CCBCCCC-SSSCEEECSSSHHHHHHHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCH
T ss_pred eEEEECC-CCCEEEECCcCHHHHHHHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCH
Confidence 8999999 99999999999999999998764334689999999999999999 8899999999999999999 88
Q ss_pred hhhHHHHHHHHHHHHHCCCCceEEEeCCCcChhhH-------HHHHHHHHHHHHhcccccc-------ccHHHHHHhhhc
Q psy17090 74 DIDAELIIMCSRLWKNLNLKNICLELNSIGNFNER-------KKYCIDLINYIKKHKDSKW-------FCEDIKHSLYLN 139 (373)
Q Consensus 74 ~~d~Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~-------l~~~~~~~l~~~ 139 (373)
.+|+|+|.++.++|+.+|++++.|+|||+++++.+ ..++..+.+.+.++ +..+ |++++.+++. +
T Consensus 161 ~aDaEvi~l~~~~l~~lgl~~~~i~l~~~~i~~~ll~~~g~~~~~~~~l~~~l~k~-~~~~~~~~~~~l~~~~~~~l~-~ 238 (373)
T 3rac_A 161 DVDMDVLRLLHEASAAAGVRHHRIVVSHARLVPRLLDALGISASLSRAFLACLTSG-NYVQFRELWQLHAAKDVDLLA-N 238 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCEEEEEETTHHHHHHHHTTCCHHHHHHHHHHHHHT-CHHHHHHHHHHHCSCCSCHHH-H
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-ChhhHHHHHHhcCHHHHHHHH-H
Confidence 99999999999999999998899999999988653 23466677777654 1111 1111122222 2
Q ss_pred hhhhhcc-------cChhHHHHHhhChhhHhh-hh----HhHHHHHHHHHHHHHhCCC---cEEEecCCCCCCCCccceE
Q psy17090 140 SLRVLDS-------KNLIIREILINAPKLLDY-LE----KDSLDHFYGIQKILNYNNI---SYKINTKLVRGMDYYNRTV 204 (373)
Q Consensus 140 ~~~~l~~-------~~~~~~~~l~~~~~l~~~-~~----~~~~~~l~~l~~~l~~~g~---~i~~D~~~~r~~~YYtG~v 204 (373)
++++.++ +++...+++++++++... .+ .+++++|+++.++|+.+|+ .+.|||+++||++||||+|
T Consensus 239 l~~l~g~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~al~~l~~l~~~L~~~gi~~~~i~~D~~lvRgldYYTG~v 318 (373)
T 3rac_A 239 LLTWSPAERDAAKRSREASDRELEALLRDAVDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDYYTGLV 318 (373)
T ss_dssp HHHBCCCSSCTTSBCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEECTTCCCSCTTCCSEE
T ss_pred HHHHhCCccccccccccccHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHcCCCCceEEEeCCccCCCCccCCeE
Confidence 2344442 222345677776665432 23 6789999999999999998 6999999999999999999
Q ss_pred EEEEeCCCCCccceeccCccchhHHhhcCCCCCeeeeechHHHHHHHHHhhc
Q psy17090 205 FEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKIN 256 (373)
Q Consensus 205 Fe~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~pavGfai~le~l~~~l~~~~ 256 (373)
||+|.++.| .+||+|||||+|++.||+ +.||||||+++|||+.++.+.+
T Consensus 319 Fe~~~~~~g--~~i~~GGRYD~L~~~fG~-~~pAvGFaiglerL~~~l~~~~ 367 (373)
T 3rac_A 319 FEMFAPGVG--APIAQGGRYDELLAQFGA-GAPAVGFAFEVERVMAVLEAQE 367 (373)
T ss_dssp EEEECTTCS--SCSEEEEECTTTTGGGTC-CCCCEEEEEEHHHHHHHHHHHH
T ss_pred EEEEECCCC--CeEeecccccHHHHhhCC-CCCeEEEEEEHHHHHHHHHhcc
Confidence 999998765 599999999999999985 6999999999999999998765
No 12
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=100.00 E-value=1.8e-51 Score=394.27 Aligned_cols=243 Identities=23% Similarity=0.358 Sum_probs=195.1
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||+|.|+ +|+.++||||+|+|+||+++++ ..+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|+|
T Consensus 84 my~~~D~-~g~~l~LRpd~T~~~aR~~~~~--~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi 160 (344)
T 1z7m_A 84 MFQFIKH-EGQSITLRYDFTLPLVRLYSQI--KDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEIL 160 (344)
T ss_dssp CCEEECT-TCCEEEECCCSHHHHHHHHHTC--CSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHH
T ss_pred EEEEECC-CCCEEecCCCCcHHHHHHHHhc--CCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHH
Confidence 8999999 9999999999999999999876 346899999999999999999999999999999999999989999999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHHH----HHHHHHHHHHhc--------cccccccHHHHHHhhhchhhhhcccC
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNERKK----YCIDLINYIKKH--------KDSKWFCEDIKHSLYLNSLRVLDSKN 148 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~----~~~~l~~~l~~~--------~~~~~l~~~~~~~l~~~~~~~l~~~~ 148 (373)
.++.++|+.+|++++.|+|||.|+++.+.. .+..+.+.+.++ .+..+|+++..+++.. +++. .
T Consensus 161 ~l~~~~l~~lgl~~~~i~l~~~gi~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~----l~~~-g 235 (344)
T 1z7m_A 161 SLALQVIEQLGLNKTVFEIGSAKFFQRLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELRGLLKE----IFIT-N 235 (344)
T ss_dssp HHHHHHHHHHTCSSEEEEEEEHHHHHHHHHHTTTCHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHHHHH----HTTC-C
T ss_pred HHHHHHHHHCCCCcEEEEECCHHHHHHHhCCCHHHHHHHHHHHHhhCHHHHHHHHHhcCCCHHHHHHHHH----HHhc-C
Confidence 999999999999889999999998765432 234445555443 1112355555544432 2333 2
Q ss_pred hhHHHHHhhChhhHh-hhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchh
Q psy17090 149 LIIREILINAPKLLD-YLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFL 227 (373)
Q Consensus 149 ~~~~~~l~~~~~l~~-~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L 227 (373)
..++++.++++.+ ..+.+++++|+++.+.|+.+| .+.|||+++||++||||+|||+|.++.+ .+||+|||||+|
T Consensus 236 --~~~~l~~~~~l~~~~~~~~~l~~l~~l~~~L~~~g-~~~~D~~lvrgldYYtG~vFe~~~~~~~--~~i~~GGRYD~L 310 (344)
T 1z7m_A 236 --ELSRLENLVTNTKDDVLISSFDQLKEFSEKLSMIK-PIIIDLGMVPKMDYYTDLMFKAYSSAAN--QPILSGGRYDQL 310 (344)
T ss_dssp --CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTTS-CCEECTTCCCSSTTCCSEEEEEEETTEE--EEEEEEEECHHH
T ss_pred --CHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhCC-CEEEeCCCCCCCccCCCeEEEEEECCCC--CeEeeCccHHHH
Confidence 1356666666654 245678999999999999999 9999999999999999999999988654 699999999999
Q ss_pred HHhhcCCCCCeeeeechHHHHHHHHHhhcC
Q psy17090 228 IKKFSNKFVPASGFAIGIERLIELIKKINI 257 (373)
Q Consensus 228 ~~~f~~~~~pavGfai~le~l~~~l~~~~~ 257 (373)
++.|+ +++||||||+++|||+.++.+.+.
T Consensus 311 ~~~fg-~~~pavGfaiglerl~~~l~~~~~ 339 (344)
T 1z7m_A 311 LSNFQ-EEAFAIGFCCHMDTILKALERQEL 339 (344)
T ss_dssp HHTSS-SCCCCEEEEEEHHHHHHHHHHHHC
T ss_pred HHHhC-CCCCeEEEEEEHHHHHHHHHhccc
Confidence 99998 889999999999999999987653
No 13
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=100.00 E-value=1e-46 Score=350.82 Aligned_cols=223 Identities=18% Similarity=0.251 Sum_probs=175.8
Q ss_pred EeeecCCCceEeecCCChHHHHHHHHHhcCCCC-CCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHH
Q psy17090 3 SFIDELNGDNLSLRPEGTASVIRSVIENNLIYD-GPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELII 81 (373)
Q Consensus 3 ~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~-~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~ 81 (373)
+|.|+ +|+.++||||+|+|+| +++....+ .|+|+||+|+|||+++|+. |||+|+|+|+||.+++.+|+|+|.
T Consensus 39 ~f~d~-~g~~l~LRpd~T~~~a---~~~~~~~~~~p~R~~y~g~vfR~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~ 111 (275)
T 1usy_A 39 FFLDR-KGNLFSIREDFTKTVL---NHRKRYSPDSQIKVWYADFVYRYSGSDL---VAEYQLGLEKVPRNSLDDSLEVLE 111 (275)
T ss_dssp CEEET-TSCEEEECCCHHHHHH---HHHTTCTTCCCEEEECCEEEEEEETTEE---EEEEEEEEEEESCCSHHHHHHHHH
T ss_pred ccCCC-CCCEEEeCCcChHHHH---HHHhhcCCCCceEEEEeceEEecCCCCC---CeeeEeCEEEecCCCchhHHHHHH
Confidence 36799 9999999999999999 33433346 8999999999999999876 999999999999999999999999
Q ss_pred HHHHHHHHCCCCceEEEeCCCcChhhHH-----HHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHh
Q psy17090 82 MCSRLWKNLNLKNICLELNSIGNFNERK-----KYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILI 156 (373)
Q Consensus 82 l~~~~l~~lg~~~~~i~i~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~ 156 (373)
++.++|+.+|++++.|+|||+++++.+. ..+..+.+++.++ +. ..+.+.+..++++ ++..+.+.+++.
T Consensus 112 l~~~~l~~lgl~~~~i~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~----~~~~~~l~~~~l~--~~~~~~l~~l~~ 184 (275)
T 1usy_A 112 IIVESASEFFEGPVIVEIGHTGVYEDLLKEIPKDLHEKVLNLIDTK-NL----AEIEFLSHMKKID--LSRVEKIIEDSI 184 (275)
T ss_dssp HHHHHHHHHCCSCEEEEEEETTHHHHHHTTSCGGGHHHHHHHHHTT-CH----HHHHHHHHHTCCC--CTHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEeCCHHHHHHHHHhCCHHHHHHHHHHHHcc-CH----HHHHHHHHhcCCC--HHHHHHHHHHHH
Confidence 9999999999988999999999877653 2345667777654 11 1223333333322 222223334443
Q ss_pred h--ChhhHhhhh--HhHHHHHHHHHHHHH-hCC-CcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHh
Q psy17090 157 N--APKLLDYLE--KDSLDHFYGIQKILN-YNN-ISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKK 230 (373)
Q Consensus 157 ~--~~~l~~~~~--~~~~~~l~~l~~~l~-~~g-~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~ 230 (373)
. .|.+.+.++ .+++++|+++.++|+ .+| +.+.|||+++||++||||+|||+|.++.+ .+||+|||||+|
T Consensus 185 ~~g~~~~l~~l~~~~~~l~~l~~l~~~l~~~~g~~~~~~D~~lvRgldYYtG~vFe~~~~~~~--~~i~~GGRYD~l--- 259 (275)
T 1usy_A 185 YRRSPEHLKTMDLPLSVREDLLSASSFLQEKFPTVSVEIDLTLARTIEEYCGLIFTIYDTSSS--RLVAAGGEYTVN--- 259 (275)
T ss_dssp HCCSGGGGGTSCCCHHHHHHHHHHHHHHHHHCSSSEEEECCCCGGGGGTCSSEEEEEEETTTT--EEEEEEEEEEET---
T ss_pred hhCCHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCCCccCCeEEEEEECCCC--CeEeeecCCCCC---
Confidence 2 344433343 568999999999999 999 78999999999999999999999998544 799999999996
Q ss_pred hcCCCCCeeeeechHHHH
Q psy17090 231 FSNKFVPASGFAIGIERL 248 (373)
Q Consensus 231 f~~~~~pavGfai~le~l 248 (373)
+.||||||+++||+
T Consensus 260 ----~~pavGfsig~er~ 273 (275)
T 1usy_A 260 ----GEKGVGGSIFLEGK 273 (275)
T ss_dssp ----TEEEEEEEEEEEEE
T ss_pred ----CCCEEEEEEEeecc
Confidence 58999999999885
No 14
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=1.6e-41 Score=347.18 Aligned_cols=348 Identities=13% Similarity=0.165 Sum_probs=247.4
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCC-CCC--CCcceeeeEEEEEcCCCchhh
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERP-QYG--RYRQFYQIGVEAIGFPGPDID 76 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~-~~g--r~ref~Q~g~eiig~~~~~~d 76 (373)
||+|.|+ +|+.++|||+.|++++|+++.+.. +.++|+|+||+|+|||+|++ +.| |.|||+|+|+|+||.+...+|
T Consensus 93 m~~~~d~-~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~ 171 (572)
T 2j3l_A 93 LYRLKDR-NDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLD 171 (572)
T ss_dssp SCEEECT-TCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHH
T ss_pred eEEEecC-CCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHH
Confidence 8999999 999999999999999999887643 24689999999999999987 567 999999999999999888888
Q ss_pred HHHH---HHHHHHHHHCCCCceEEEeCCCcChhhHHH---------------------H--HHHHHHHHHhcccc-----
Q psy17090 77 AELI---IMCSRLWKNLNLKNICLELNSIGNFNERKK---------------------Y--CIDLINYIKKHKDS----- 125 (373)
Q Consensus 77 ~Evi---~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~---------------------~--~~~l~~~l~~~~~~----- 125 (373)
+|++ .++.++|+.||++ +.+.+||.|.+..... + ...+..++....+.
T Consensus 172 ~e~~~~~~~~~~~~~~lgl~-~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (572)
T 2j3l_A 172 QSYRDYEKAYSRIFERCGLE-FRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQL 250 (572)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-EEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCc-EEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhccccccccccccc
Confidence 8864 5899999999997 9999999775443100 0 00000000000000
Q ss_pred ----cccc-----HHHHHHhhhchhhhhcc---------------c----C-hhHHHHHhhChhhHhhhhHhHHHHHHHH
Q psy17090 126 ----KWFC-----EDIKHSLYLNSLRVLDS---------------K----N-LIIREILINAPKLLDYLEKDSLDHFYGI 176 (373)
Q Consensus 126 ----~~l~-----~~~~~~l~~~~~~~l~~---------------~----~-~~~~~~l~~~~~l~~~~~~~~~~~l~~l 176 (373)
.... ++....+...+-++... . + ..+...+... .+ .....+++..+
T Consensus 251 ~~~~~~~~~~~ti~~l~~~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~-~l----~~a~~~el~~~ 325 (572)
T 2j3l_A 251 DLEKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGAD-FL----DEATEEDARRV 325 (572)
T ss_dssp CCEEEECTTCCSHHHHHHHHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCS-CE----EECCHHHHHHH
T ss_pred ccceecCCCCCcHHHHHHHhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHHhhCCC-cc----ccCCHHHHHHh
Confidence 0000 00000000000000000 0 0 0011111110 00 00112334443
Q ss_pred HH----HHHhC----CCcEEEecCCCC--------------------CCCCccceEEEEEeCCCCCccceeccCccc---
Q psy17090 177 QK----ILNYN----NISYKINTKLVR--------------------GMDYYNRTVFEWTTDKLGSQNSICGGGRYD--- 225 (373)
Q Consensus 177 ~~----~l~~~----g~~i~~D~~~~r--------------------~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD--- 225 (373)
.. .+..+ ++.+.+|+++++ |.+||++.+|++.....|...++|+ ||||
T Consensus 326 ~g~~~g~~~p~gl~~~i~~~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~g-g~~~~~~ 404 (572)
T 2j3l_A 326 LGAGFGSIGPVNVSEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGN-GVLAFTK 404 (572)
T ss_dssp HSSCTTSCCSTTCCTTCEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSS-SBEEEEE
T ss_pred hCCCccccCCccCCCCCcEEEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccC-Ccceecc
Confidence 32 12223 356899999999 7899999999997655555456664 7877
Q ss_pred --------hh----HHhh-------cCC-CCCee-eeechHHHHHHHHHhh------cCCCCCCCCceEEEEEcC---ch
Q psy17090 226 --------FL----IKKF-------SNK-FVPAS-GFAIGIERLIELIKKI------NINHNFSHQCDIYIVHVG---KE 275 (373)
Q Consensus 226 --------~L----~~~f-------~~~-~~pav-Gfai~le~l~~~l~~~------~~~~~~~~~~~v~v~~~~---~~ 275 (373)
+| .+.| +|+ ..|++ ||+||+|||+.++.+. ..+|+|.+|.+|+|++.+ +.
T Consensus 405 ~ievg~~f~Lg~~ys~~~~~~~~~~~g~~~~p~~g~~giGveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~ 484 (572)
T 2j3l_A 405 GIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEY 484 (572)
T ss_dssp EEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTCHH
T ss_pred ceEEEEEeccCcccccccCCEEECCCCcEEeeeeeccccCHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCCHH
Confidence 22 2455 343 47888 7999999999998765 245667788999999998 66
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeec
Q psy17090 276 AELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISIS 355 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~ 355 (373)
....+.++++.||++|++|++++++ .++++++++|++.|+||+|+||++| ++|+|+||+++++ +|..|+
T Consensus 485 ~~~~a~~l~~~Lr~~gi~v~~d~~~----~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~------~q~~v~ 553 (572)
T 2j3l_A 485 QTKLSQEVEAMMTEAGYEVLVDDRN----ERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKIKRTG------EMLEVR 553 (572)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEETTTC------CEEEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCC----CCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCC------cEEEEe
Confidence 7888999999999999999999987 8999999999999999999999999 9999999999999 999999
Q ss_pred HHHHHHHHHHHHH
Q psy17090 356 FKDAENYFYKKII 368 (373)
Q Consensus 356 ~~el~~~l~~~~~ 368 (373)
++++++++. .+.
T Consensus 554 ~~~l~~~l~-~~~ 565 (572)
T 2j3l_A 554 KEELESTLS-ILM 565 (572)
T ss_dssp HHHHHHHHH-HHC
T ss_pred HHHHHHHHH-HHh
Confidence 999999998 654
No 15
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=8.5e-40 Score=320.58 Aligned_cols=291 Identities=16% Similarity=0.203 Sum_probs=232.5
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCC--CCC--CCcceeeeEEEEEcCCCchh
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERP--QYG--RYRQFYQIGVEAIGFPGPDI 75 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~--~~g--r~ref~Q~g~eiig~~~~~~ 75 (373)
||+ .|+ +|+.++|||+.|++++|+++++... .++|+|+||+|+|||+|.+ +.| |.|||+|+|+|+||. ...+
T Consensus 76 m~~-~d~-~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~-~~~~ 152 (401)
T 1evl_A 76 MFT-TSS-ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCT-EEQI 152 (401)
T ss_dssp CCE-EEE-TTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEC-GGGH
T ss_pred hEe-Eec-CCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCC-HHHH
Confidence 789 899 9999999999999999999765332 3689999999999999974 778 999999999999996 4567
Q ss_pred hH---HHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHH
Q psy17090 76 DA---ELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIR 152 (373)
Q Consensus 76 d~---Evi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~ 152 (373)
|+ |++.++.++++.||++++.+.+|+.. +... + ..+.
T Consensus 153 ~~e~~e~i~~~~~~~~~lgl~~~~~~~~~~~--~~~~-----------------~-~~~~-------------------- 192 (401)
T 1evl_A 153 RDEVNGCIRLVYDMYSTFGFEKIVVKLSTRP--EKRI-----------------G-SDEM-------------------- 192 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSCCEEEEECCC--SSCC-----------------S-CHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEecCC--cccC-----------------C-CHHH--------------------
Confidence 77 58999999999999977999999853 1100 0 0000
Q ss_pred HHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcE------------EEecCCCC--CCCCccceEEEEEeCCCCCccce
Q psy17090 153 EILINAPKLLDYLEKDSLDHFYGIQKILNYNNISY------------KINTKLVR--GMDYYNRTVFEWTTDKLGSQNSI 218 (373)
Q Consensus 153 ~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i------------~~D~~~~r--~~~YYtG~vFe~~~~~~g~~~~i 218 (373)
...++ ..+.+.|...|+++ .+|+.+++ |.+||+|++|.-|. -+.
T Consensus 193 --~~~a~--------------~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~gt~~~d~~------l~~ 250 (401)
T 1evl_A 193 --WDRAE--------------ADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFS------LPS 250 (401)
T ss_dssp --HHHHH--------------HHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEEEEEEEESS------HHH
T ss_pred --HHHHH--------------HHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEeeeeeeccc------ccc
Confidence 00000 00111122222222 26777777 99999999983221 145
Q ss_pred eccCccchhHHhhcCCCCCeeee-ec--hHHHHHHHHHhh--cCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCe
Q psy17090 219 CGGGRYDFLIKKFSNKFVPASGF-AI--GIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLK 293 (373)
Q Consensus 219 a~GGRYD~L~~~f~~~~~pavGf-ai--~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~ 293 (373)
+.|+||+.. .|++..|++|+ ++ ++|||+.++.+. +.+|++.+|.+|+|++.++.....+.++++.||++|++
T Consensus 251 ~~~~~y~~~---~g~~~~p~~~~~~~~GgieRli~~l~e~~~~~~p~~~ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~ 327 (401)
T 1evl_A 251 RLSASYVGE---DNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIR 327 (401)
T ss_dssp HTTCCEECT---TSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSGGGHHHHHHHHHHHHHTTCC
T ss_pred ccCCEEECC---CCCCcCcEEEEecCCCcHHHHHHHHHHHhCCcCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHCCCE
Confidence 689999853 34446899988 77 999999999886 66666678899999999988889999999999999999
Q ss_pred EEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHHh
Q psy17090 294 VILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIK 369 (373)
Q Consensus 294 v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~~ 369 (373)
|++++++ .++++++++|++.|+|++|+||++|+++|+|+||++.++ +|..|+++++++.+.+.+..
T Consensus 328 v~~d~~~----~~~~~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~------~q~~v~~~el~~~l~~~~~~ 393 (401)
T 1evl_A 328 VKADLRN----EKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGK------DLGSMDVNEVIEKLQQEIRS 393 (401)
T ss_dssp EEEECCS----SCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTSC------EEEEEEHHHHHHHHHHHHHT
T ss_pred EEEECCC----CCHHHHHHHHHhcCCCEEEEECcchhhCCeEEEEECCCC------ceEEeeHHHHHHHHHHHHhh
Confidence 9999887 899999999999999999999999999999999999999 99999999999999877654
No 16
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=2.5e-41 Score=336.28 Aligned_cols=321 Identities=15% Similarity=0.186 Sum_probs=236.7
Q ss_pred CeEeeecCCCceEeecC---CChHHHHHHHHHhcCCCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCCch
Q psy17090 1 MYSFIDELNGDNLSLRP---EGTASVIRSVIENNLIYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPD 74 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRp---D~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~~~ 74 (373)
||+|.|+ +|+.++||| |+|++++|.++.+. .++|+|+||+|+|||+| +|+.| |.|||+|+|+|+||.++..
T Consensus 113 m~~~~d~-~~~~~~LrPt~ee~t~~i~r~~~~s~--~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ 189 (458)
T 2i4l_A 113 MLRIADR-HKRELLYGPTNEEMITEIFRAYIKSY--KSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAG 189 (458)
T ss_dssp SEEEECT-TCCEEEECSCCHHHHHHHHHHHCCBG--GGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHH
T ss_pred eEEEEeC-CCCeEEECCCChHHHHHHHHHHHhhc--cccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHH
Confidence 8999999 999999999 99999999987542 36899999999999999 99899 9999999999999988888
Q ss_pred hhHHHHHH---HHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHH--HHhcc-ccccccHHHHHHhhhchhhhhccc-
Q psy17090 75 IDAELIIM---CSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINY--IKKHK-DSKWFCEDIKHSLYLNSLRVLDSK- 147 (373)
Q Consensus 75 ~d~Evi~l---~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~--l~~~~-~~~~l~~~~~~~l~~~~~~~l~~~- 147 (373)
+|+|++.+ +.++|+.||++ +.+.+||.|.+...... .+ +.... +...++ ++ ....++ ..+++.
T Consensus 190 ad~e~~~~~~~~~~i~~~lGl~-~~~~~~~~g~~gg~~s~-----e~~~l~~~ged~i~~~-~~--~~~~n~-~~~~~~~ 259 (458)
T 2i4l_A 190 ARKSYNKMFVAYLRTFARMGLK-AIPMRAETGPIGGDLSH-----EFIVLAETGESGVYID-RD--VLNLPV-PDENVDY 259 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCC-EEEEECCCCSSCSSCEE-----EEEEECTTCSEEEEEE-GG--GGGCCC-CCTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCc-eEEEEccccccCCccch-----hhhhhhhcCcceEEec-cc--ccccCH-HHHhccc
Confidence 89998755 99999999997 99999999875432100 00 00000 000011 01 011111 112211
Q ss_pred ChhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchh
Q psy17090 148 NLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFL 227 (373)
Q Consensus 148 ~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L 227 (373)
.+.+.+++..++.+.. +..+. .+....+ |..+.+|++++|+++ ||.+|++ |...+++.||||++.
T Consensus 260 ~~~l~~~l~~~~~~~~-~~~~~--~~g~~~~-----~~~~~~~l~~~rgl~--~G~iFel-----g~~~s~~~g~ry~~~ 324 (458)
T 2i4l_A 260 DGDLTPIIKQWTSVYA-ATEDV--HEPARYE-----SEVPEANRLNTRGIE--VGQIFYF-----GTKYSDSMKANVTGP 324 (458)
T ss_dssp TSCCHHHHHHHHHSCE-EETTT--CCTTHHH-----HHSCTTTEEEEEEEE--EEEEEEE-----ETHHHHHTTCEEECT
T ss_pred cHhHHHHHhcCchhhh-cChhh--ccccccc-----CCCCCcCceeeeeec--cCcEEEe-----cccccccCCcEEECC
Confidence 1122233322221100 00000 0000000 012346777888888 9999998 223689999999874
Q ss_pred HHhhcCCCCC--eeeeechHHHHHHHHHhh-----c-CCCCCCCCceEEEEEcC---chhHHHHHHHHHHHHHcCCeEEE
Q psy17090 228 IKKFSNKFVP--ASGFAIGIERLIELIKKI-----N-INHNFSHQCDIYIVHVG---KEAELKAFVLSENLRTLGLKVIL 296 (373)
Q Consensus 228 ~~~f~~~~~p--avGfai~le~l~~~l~~~-----~-~~~~~~~~~~v~v~~~~---~~~~~~~~~la~~Lr~~Gi~v~~ 296 (373)
+|++.| ++||+||+||++.++.+. + .+|++.+|.+|+|++.+ +.....|.++++.||++|++|++
T Consensus 325 ----~G~~~p~~~~gfgiGveRli~al~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~ 400 (458)
T 2i4l_A 325 ----DGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLY 400 (458)
T ss_dssp ----TSCEEECEEEEEEEEHHHHHHHHHHHSEETTEECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ----CCCEeceEEeeecccHHHHHHHHHHhhccccCCcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 356677 889999999999998765 3 45667788999999986 55678899999999999999999
Q ss_pred EeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHH
Q psy17090 297 NCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYF 363 (373)
Q Consensus 297 ~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l 363 (373)
++++ .++++++++|++.|+|++|+||++|+++|+|+||+++++ ++..|+++++++++
T Consensus 401 D~~~----~~~g~k~~~ad~~g~p~~iivG~~e~~~g~v~vr~r~~~------~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 401 DDTD----QRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDG------ARENLALADVVARL 457 (458)
T ss_dssp ECSS----CCHHHHHHHHHHHTCSEEEEECHHHHTTTEEEEEETTTC------CEEEEETTTTTCC-
T ss_pred ECCC----CCHHHHHHHHHhcCCCEEEEECCchhhCCEEEEEECCCC------cEEEEeHHHHHHhh
Confidence 9987 899999999999999999999999999999999999999 99999999987665
No 17
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=1.6e-39 Score=324.38 Aligned_cols=309 Identities=16% Similarity=0.140 Sum_probs=223.2
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhc-CCC---CCCeeEEEeeceeecCCCC--CC--CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENN-LIY---DGPKRLWYSGPMFRHERPQ--YG--RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~-~~~---~~p~k~~y~g~vfR~~~~~--~g--r~ref~Q~g~eiig~~~ 72 (373)
||+| |+ +|+.++||||.|++++|+++++. .++ ++|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.++
T Consensus 95 my~~-d~-~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~ 172 (471)
T 3a32_A 95 MYLF-DI-EGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGG 172 (471)
T ss_dssp SEEE-EE-TTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGG
T ss_pred eEEE-ec-CCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChH
Confidence 7999 99 99999999999999999998762 233 6899999999999999888 88 99999999999999988
Q ss_pred chhh--HHHHHHHHHHHHH-CCC----CceEEEeCCCc--Ch-hhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhh
Q psy17090 73 PDID--AELIIMCSRLWKN-LNL----KNICLELNSIG--NF-NERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLR 142 (373)
Q Consensus 73 ~~~d--~Evi~l~~~~l~~-lg~----~~~~i~i~~~~--~~-~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~ 142 (373)
..+| +|+|.++.++|+. ||+ +++.+.+||.. ++ +....+...+.+. .. . +.+.+..++..+++.
T Consensus 173 ~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~-~~---~--l~~~~~~~l~~~~~~ 246 (471)
T 3a32_A 173 RVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGA-EE---A--LREAASRINEKYGID 246 (471)
T ss_dssp GHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHH-HH---H--HHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHH-HH---H--HHHHHHHHHHhcCCc
Confidence 8888 9999999999999 999 78999999985 22 3321111111100 00 0 222222222222211
Q ss_pred hhcccChhHHHHHhhChhhHhhhhH-h-HHHHHHHHHHHHHhCCCcEEEecCCCCCCC--Ccc----ceEEEEEeCCCCC
Q psy17090 143 VLDSKNLIIREILINAPKLLDYLEK-D-SLDHFYGIQKILNYNNISYKINTKLVRGMD--YYN----RTVFEWTTDKLGS 214 (373)
Q Consensus 143 ~l~~~~~~~~~~l~~~~~l~~~~~~-~-~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~--YYt----G~vFe~~~~~~g~ 214 (373)
++..+....++ .|++...+.. + ++.++ ...| .+++|++++++++ ||| |.+ +.+.-+
T Consensus 247 --~~~~~~~~~~~--gp~i~~~l~d~~~~l~~~-------~~~g-~~~lD~~l~r~~d~~Yyt~~~~G~~-e~~~i~--- 310 (471)
T 3a32_A 247 --IVELEGEAAFY--GPKLDFIMMVEESGVSKE-------WQMG-TIQFDFNLPRRFRLYDVVREEFGIE-EVYIIH--- 310 (471)
T ss_dssp --EEEETTCSBTT--BCEEEEEEEEESSSCEEE-------EEEE-EEEEESSHHHHTTHHHHHHHHHCCS-CEEEEE---
T ss_pred --eEecccchhhC--CCccceEEeccHHhhhhh-------heee-eEEecccccccCCceEeccccCCce-eeEEEe---
Confidence 11111111111 2222111110 0 00000 0124 5899999999999 999 998 665421
Q ss_pred ccceeccCccchhHHhhcCCCCCeeeeechHHHHHHHHHhh--cCCCCCCCCceEEEEEcC------chhHHHHHHHHHH
Q psy17090 215 QNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVG------KEAELKAFVLSEN 286 (373)
Q Consensus 215 ~~~ia~GGRYD~L~~~f~~~~~pavGfai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~------~~~~~~~~~la~~ 286 (373)
.+++ | ++||++.++.+. +.+|+|.+|.+|+|+|.+ +.....|.++++.
T Consensus 311 -~~i~--------------------G---gieRli~~lie~~~g~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~~~ 366 (471)
T 3a32_A 311 -RALL--------------------G---SIERFLGVYLEHRRGRMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKG 366 (471)
T ss_dssp -EEEE--------------------E---EHHHHHHHHHHHTTTCCCGGGCSCSEEEEEEECSSTTHHHHHHHHHHHHHH
T ss_pred -cccc--------------------C---cHHHHHHHHHHHhCCCCCCCcCCceEEEEEccCcccccHHHHHHHHHHHHH
Confidence 1222 2 899999655443 356666788999999987 5567889999999
Q ss_pred HHHcCCeEEEEe-ccCccccCHHHHHHHHH-HcCCCEEEEEccCcccCCeEEEEECCCCCCCCCcc--ceeecHH-----
Q psy17090 287 LRTLGLKVILNC-VFNNIHESFKSQMKRAN-ASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLK--QISISFK----- 357 (373)
Q Consensus 287 Lr~~Gi~v~~~~-~~~~~~~sl~~~~~~a~-~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~--~~~v~~~----- 357 (373)
||++|++|++++ ++ .++++++++|+ ..|+|++|+||++|+++|+|+||+++++ + +..|+++
T Consensus 367 Lr~~Gi~v~~D~~~~----~~~g~k~~~a~~~~gip~~iiiG~~e~~~~~V~vr~r~~~------~q~~~~v~~~~~~~~ 436 (471)
T 3a32_A 367 LLDKGFRVAVKGSSK----TGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLE------SMKRRRLAIAYGDAA 436 (471)
T ss_dssp HHHTTCEEEEEEEET----TTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETT------TTEEEEEEEECSSHH
T ss_pred HHHCCCEEEEecCCC----CCHHHHHHHHHHhcCCCEEEEECchhhhCCEEEEEECCCC------ccceEEEeecccchh
Confidence 999999999999 76 89999999999 9999999999999999999999999998 6 6889888
Q ss_pred HHHHHHHHHH
Q psy17090 358 DAENYFYKKI 367 (373)
Q Consensus 358 el~~~l~~~~ 367 (373)
++++.+.+.+
T Consensus 437 ~~~~~~~~~~ 446 (471)
T 3a32_A 437 DAVENLAAVA 446 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777765544
No 18
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=2.1e-36 Score=312.70 Aligned_cols=300 Identities=15% Similarity=0.181 Sum_probs=223.8
Q ss_pred CeEeeecCCC-ceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCC--CC--CCcceeeeEEEEEcCCCch
Q psy17090 1 MYSFIDELNG-DNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQ--YG--RYRQFYQIGVEAIGFPGPD 74 (373)
Q Consensus 1 m~~f~D~~~G-~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~--~g--r~ref~Q~g~eiig~~~~~ 74 (373)
||+|+|. +| +.++||||.|++++|+++++... +++|+|+||+|+|||+|+++ .| |.|||+|+|+|+||.+++.
T Consensus 317 mf~~~d~-~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~ 395 (645)
T 1nyr_A 317 MFPPMQL-DETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQI 395 (645)
T ss_dssp SCCCEEE-TTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGH
T ss_pred cceeEec-CCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHH
Confidence 8999999 99 99999999999999999876442 36899999999999999886 56 9999999999999998888
Q ss_pred hh--HHHHHHHHHHHHHCCCCceEEEeCCCcCh--hhH----HHHH---HHHHHHHHhccccccccHHHHHHhhhchhhh
Q psy17090 75 ID--AELIIMCSRLWKNLNLKNICLELNSIGNF--NER----KKYC---IDLINYIKKHKDSKWFCEDIKHSLYLNSLRV 143 (373)
Q Consensus 75 ~d--~Evi~l~~~~l~~lg~~~~~i~i~~~~~~--~~~----~~~~---~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~ 143 (373)
+| +|++.++.++|+.||++++.+++|+.... +.. ..|. ..+.+.+... .+..
T Consensus 396 ~d~~~e~i~~~~~~l~~lGl~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~-----------------g~~~ 458 (645)
T 1nyr_A 396 KEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADEL-----------------GLSY 458 (645)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHH-----------------CCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcccchhhcCChHHHHHHHHHHHHHHHHc-----------------CCCe
Confidence 88 99999999999999998899999986321 110 0110 0111111100 0000
Q ss_pred hcccChhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCC-CccceEEEEEeCCCCCccceeccC
Q psy17090 144 LDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMD-YYNRTVFEWTTDKLGSQNSICGGG 222 (373)
Q Consensus 144 l~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~-YYtG~vFe~~~~~~g~~~~ia~GG 222 (373)
..+++...+ ..|++...+ .++ +.+. -.+| .+++|+.++++++ ||+|.
T Consensus 459 --~~~~~~~~~--ygpki~~~~-~d~---lg~~----~~~g-tiq~D~~l~~~~d~~Y~~~------------------- 506 (645)
T 1nyr_A 459 --EEAIGEAAF--YGPKLDVQV-KTA---MGKE----ETLS-TAQLDFLLPERFDLTYIGQ------------------- 506 (645)
T ss_dssp --CCEESCSBT--TBCEEEEEE-CCT---TSCC----EEEE-EEEEESSHHHHTTCCEECT-------------------
T ss_pred --EecCCCCce--eCCccceeh-hhh---hCch----hhcc-eEEeecccccccceEEECC-------------------
Confidence 000000000 011110000 000 0000 0011 3566666666666 66543
Q ss_pred ccchhHHhhcCCCCCee---eeechHHHHHHHHHhh--cCCCCCCCCceEEEEEcC-chhHHHHHHHHHHHHHcCCeEEE
Q psy17090 223 RYDFLIKKFSNKFVPAS---GFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVG-KEAELKAFVLSENLRTLGLKVIL 296 (373)
Q Consensus 223 RYD~L~~~f~~~~~pav---Gfai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~-~~~~~~~~~la~~Lr~~Gi~v~~ 296 (373)
.|++..|++ |++.++||++.++.+. +.+|+|.+|.+|+|+|.+ +.....|.++++.||++|++|++
T Consensus 507 --------~g~~~~P~~ih~~~~GgieR~i~~liE~~~~~~P~~lap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~ 578 (645)
T 1nyr_A 507 --------DGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSI 578 (645)
T ss_dssp --------TSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred --------CCCccCcEEEEeccCCcHHHHHHHHHHHhcCCCCCCCCCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEE
Confidence 122457888 8888999999888664 567778899999999998 77888999999999999999999
Q ss_pred EeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 297 NCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 297 ~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
++++ .++++++++|+..|+||+|+||++|+++|+|+||+++++ ++..|+++++++.|++.+.
T Consensus 579 D~~~----~~~g~k~~~a~~~g~p~~iivG~~e~~~~~V~vr~r~~~------~~~~v~~~e~~~~l~~~~~ 640 (645)
T 1nyr_A 579 DDRN----EKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQ------DQETVEKDEFIWNLVDEIR 640 (645)
T ss_dssp CCSS----CCHHHHHHHHHHHTCSEEEEECHHHHHTTEEEEEETTSS------CCCEEEHHHHHHHHHHHHH
T ss_pred ECCC----CCHHHHHHHHHhcCCCEEEEEccchhhCCEEEEEECCCC------cEEEEEHHHHHHHHHHHHh
Confidence 9987 899999999999999999999999999999999999999 9999999999999987765
No 19
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=1.1e-34 Score=298.78 Aligned_cols=292 Identities=17% Similarity=0.244 Sum_probs=223.9
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCC--CCC--CCcceeeeEEEEEcCCCchh
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERP--QYG--RYRQFYQIGVEAIGFPGPDI 75 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~--~~g--r~ref~Q~g~eiig~~~~~~ 75 (373)
||+ .|. +|+.++|||+.|++++|+++.+.. ++++|+|+||+|+|||+|.+ +.| |.|||+|+|+|+||.+. .+
T Consensus 317 my~-~d~-~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~-~~ 393 (642)
T 1qf6_A 317 MFT-TSS-ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEE-QI 393 (642)
T ss_dssp CEE-EEE-TTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGG-GH
T ss_pred cee-eec-CCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHH-HH
Confidence 899 899 999999999999999999886532 34689999999999999987 678 99999999999999653 56
Q ss_pred hHH---HHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHH
Q psy17090 76 DAE---LIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIR 152 (373)
Q Consensus 76 d~E---vi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~ 152 (373)
++| ++.++.++++.||++++.+.+++.. +. . ...+
T Consensus 394 ~~e~~~~i~~~~~i~~~lGl~~~~v~l~~~~--e~-----------------~--~g~~--------------------- 431 (642)
T 1qf6_A 394 RDEVNGCIRLVYDMYSTFGFEKIVVKLSTRP--EK-----------------R--IGSD--------------------- 431 (642)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCCCEEEEECCC--SS-----------------C--CSCH---------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEecCc--cc-----------------c--cCCH---------------------
Confidence 777 6999999999999977999999852 10 0 0000
Q ss_pred HHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEe-CCCCCc-----------cceec
Q psy17090 153 EILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTT-DKLGSQ-----------NSICG 220 (373)
Q Consensus 153 ~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~-~~~g~~-----------~~ia~ 220 (373)
+....++ ..+.+.+...|+++.++++ .-+||+ ..|++.. +..|.. -+..-
T Consensus 432 e~w~~a~--------------~~l~~~l~~~g~~~~~~~g---~~afyg-pk~d~~~~d~~G~~~~~gti~~df~l~~r~ 493 (642)
T 1qf6_A 432 EMWDRAE--------------ADLAVALEENNIPFEYQLG---EGAFYG-PKIEFTLYDCLDRAWQCGTVQLDFSLPSRL 493 (642)
T ss_dssp HHHHHHH--------------HHHHHHHHTTTCCCEEETT---CSCTTC-CEEEEEEECTTCCEEEEEEEEEESSHHHHT
T ss_pred HHHHHHH--------------HHHHHHHHHcCCCcEEcCC---Cccccc-CcccEEEEccCCceEEeeeEEEeccCCccC
Confidence 0000000 1123334455666666665 124443 3344422 111210 02233
Q ss_pred cCccchhHHhhcCCCCCeeee-ec--hHHHHHHHHHhh--cCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEE
Q psy17090 221 GGRYDFLIKKFSNKFVPASGF-AI--GIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVI 295 (373)
Q Consensus 221 GGRYD~L~~~f~~~~~pavGf-ai--~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~ 295 (373)
|+||- ...|++..|++|+ ++ +++|++.++.+. +.+|+|.+|.+|.|+|.++.....|.++++.||++|++|+
T Consensus 494 ~~~y~---~~~g~~~~P~~~hrai~G~ieR~i~~liE~~~~~~P~~laP~qv~vipi~~~~~~~a~~v~~~L~~~Gi~v~ 570 (642)
T 1qf6_A 494 SASYV---GEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVK 570 (642)
T ss_dssp TCCEE---CTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEE
T ss_pred CCEEE---ecCCCCcCcEEEEeccCCCHHHHHHHHHHHhcCCCCcccCCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEE
Confidence 45552 2234456888877 66 899999998775 5678788999999999998888999999999999999999
Q ss_pred EEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 296 LNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 296 ~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
+++++ .++++++++|+..|+||+|+||++|+++|+|+||+++++ ++..|+++++++.|.+.+.
T Consensus 571 ~D~~~----~~~g~kir~a~~~g~p~~ivvG~~E~~~~~V~vr~r~~~------~~~~v~~~e~~~~l~~~~~ 633 (642)
T 1qf6_A 571 ADLRN----EKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGK------DLGSMDVNEVIEKLQQEIR 633 (642)
T ss_dssp EECCS----SCHHHHHHHHHHTTCSEEEEECTTTGGGCCEEEEESSSC------EEEEECHHHHHHHHHHHHH
T ss_pred EECCC----CCHHHHHHHHHHcCCCEEEEECchhhhcCeEEEEECCCC------ceEEEEHHHHHHHHHHHHh
Confidence 99987 899999999999999999999999999999999999999 9999999999999987764
No 20
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=4.7e-34 Score=282.88 Aligned_cols=296 Identities=18% Similarity=0.217 Sum_probs=219.5
Q ss_pred CeEeeecC-CCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCC--CC--CCcceeeeEEEEEcCCCch
Q psy17090 1 MYSFIDEL-NGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQ--YG--RYRQFYQIGVEAIGFPGPD 74 (373)
Q Consensus 1 m~~f~D~~-~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~--~g--r~ref~Q~g~eiig~~~~~ 74 (373)
||+|.|.. .|+.++|||+.|++++++++.... +.++|+|+||+|+|||+|.++ .| |.|||+|.|+++|+.+. .
T Consensus 111 my~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e-~ 189 (460)
T 3uh0_A 111 MFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPS-Q 189 (460)
T ss_dssp SCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGG-G
T ss_pred eEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHH-H
Confidence 78998861 378999999999999999876433 246899999999999999885 78 99999999999998764 4
Q ss_pred hhHH---HHHHHHHHH-HHCCCC--------ceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhh
Q psy17090 75 IDAE---LIIMCSRLW-KNLNLK--------NICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLR 142 (373)
Q Consensus 75 ~d~E---vi~l~~~~l-~~lg~~--------~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~ 142 (373)
+++| +|.++.+++ +.||++ ++.+.+++.. + + - +.++
T Consensus 190 ~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l~t~p--e--------------~---~--~G~~----------- 237 (460)
T 3uh0_A 190 VKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRP--D--------------H---F--IGDL----------- 237 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCC-----CCSSCEEEEECCC--S--------------S---C--CSCH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcccccccceEEEEccCC--c--------------c---c--CCCH-----------
Confidence 5665 899999999 999998 7888887631 0 0 0 1100
Q ss_pred hhcccChhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEe-CCCCCcc---ce
Q psy17090 143 VLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTT-DKLGSQN---SI 218 (373)
Q Consensus 143 ~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~-~~~g~~~---~i 218 (373)
+....+ - ..|.+.|+..|.++.++++ .-.|| |...++.. +..|..- .|
T Consensus 238 ----------~~w~~a-----------e---~~L~~~l~~~g~~~~~~~g---~gafy-gpkid~~~~d~~gr~~q~~Ti 289 (460)
T 3uh0_A 238 ----------KVWNHA-----------E---QVLKEILEESGKPWKLNPG---DGAFY-GPKLDIMVTDHLRKTHQVATI 289 (460)
T ss_dssp ----------HHHHHH-----------H---HHHHHHHHHHTCCEEEETT---CSCSS-CCEEEEEEECTTSCEEEEEEE
T ss_pred ----------HHHHHH-----------H---HHHHHHHHHhCCCeeECCC---ccccc-cceEEEEEEccCCCeeeeccc
Confidence 000000 0 1122233345777777776 33466 54444432 2223110 11
Q ss_pred ----eccCccchhH-HhhcCCCCCee----eeechHHHHHHHHHhh--cCCCCCCCCceEEEEEcCch---hHHHHHHHH
Q psy17090 219 ----CGGGRYDFLI-KKFSNKFVPAS----GFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKE---AELKAFVLS 284 (373)
Q Consensus 219 ----a~GGRYD~L~-~~f~~~~~pav----Gfai~le~l~~~l~~~--~~~~~~~~~~~v~v~~~~~~---~~~~~~~la 284 (373)
..+.|||-.. ..-|++..|++ +|+ ++||++.+|.+. +.+|+|.+|.+|+|+|++.. ....|.+++
T Consensus 290 qld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~G-g~eRli~~Lie~~~g~~P~~laP~qv~Vipi~~~~~~~~~~a~~l~ 368 (460)
T 3uh0_A 290 QLDFQLPERFDLKFKDQDNSYKRPIMIHRATFG-SIERFMALLIDSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQ 368 (460)
T ss_dssp EEESHHHHHTTCCEECTTSCEECCEEEEEEEEE-EHHHHHHHHHHHHTTCCCGGGCSCCEEEEESSTTCHHHHHHHHHHH
T ss_pred ccccccccccceEEECCCCCccCcEEEecCcch-HHHHHHHHHHHHcCCCCCCCCCCceEEEEEecCCcHHHHHHHHHHH
Confidence 1235555331 11123457877 477 899999999775 56777899999999999876 678899999
Q ss_pred HHHHHc--------------CCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCcc
Q psy17090 285 ENLRTL--------------GLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLK 350 (373)
Q Consensus 285 ~~Lr~~--------------Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~ 350 (373)
+.||++ |++|++++++ .++++++++|++.|+||+|+||++|+++|+|+||+++++ +
T Consensus 369 ~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~----~~lg~k~r~Ad~~g~p~~ivvG~~E~~~g~Vtvr~r~~~------e 438 (460)
T 3uh0_A 369 KKLRNELEADDMEPVPLNDWHFNVDLDIRN----EPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNR------K 438 (460)
T ss_dssp HHHHCCCCTTSSCCCCTTCCCCCEEECCCS----SCHHHHHHHHHHHTCSEEEEECHHHHHHTCEEEEEGGGT------T
T ss_pred HHHHcCcccccccccccCCCCEEEEEECCC----CCHHHHHHHHHHcCCCEEEEEcchhhhCCeEEEEECCCC------c
Confidence 999999 9999999987 899999999999999999999999999999999999999 9
Q ss_pred -ceeecHHHHHHHHHHHHH
Q psy17090 351 -QISISFKDAENYFYKKII 368 (373)
Q Consensus 351 -~~~v~~~el~~~l~~~~~ 368 (373)
+..|+++|+++.+++.+.
T Consensus 439 ~q~~v~~~el~~~l~~~~~ 457 (460)
T 3uh0_A 439 SFEKLTMSQIWEKFIELEK 457 (460)
T ss_dssp SCEEECHHHHHHHHHHHHH
T ss_pred eeEEeeHHHHHHHHHHHHH
Confidence 999999999999987764
No 21
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=2e-34 Score=286.99 Aligned_cols=271 Identities=14% Similarity=0.085 Sum_probs=218.2
Q ss_pred CeEeeecCC----CceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCCCC--CCcceeeeEEEEEcCCCc
Q psy17090 1 MYSFIDELN----GDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQYG--RYRQFYQIGVEAIGFPGP 73 (373)
Q Consensus 1 m~~f~D~~~----G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~~g--r~ref~Q~g~eiig~~~~ 73 (373)
||+|.|+ + |+.++|||+.|++++|+++.+... +++|+|+||+|+|||+|.+..| |.|||+|+|+|++|.+..
T Consensus 91 my~~~d~-g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~ 169 (477)
T 1hc7_A 91 LAVVTHA-GGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATRE 169 (477)
T ss_dssp CEEEEEE-SSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHH
T ss_pred eEEEECC-CCccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHH
Confidence 8999998 7 899999999999999999876443 3689999999999999955558 999999999999999888
Q ss_pred hhhHHHHHH---HHHHH-HHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccCh
Q psy17090 74 DIDAELIIM---CSRLW-KNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNL 149 (373)
Q Consensus 74 ~~d~Evi~l---~~~~l-~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~ 149 (373)
.+|+|++.+ +.+++ +.||++ +.+.+++.. .+. +... +.
T Consensus 170 ~ad~E~~~~l~~~~~i~~~~Lgl~-~~~~~~~~~----------------e~~-----~g~~-------------~~--- 211 (477)
T 1hc7_A 170 EAEEEVRRMLSIYARLAREYAAIP-VIEGLKTEK----------------EKF-----AGAV-------------YT--- 211 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC-CEEEECCTT----------------TSC-----TTSS-------------EE---
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCe-EEEEeCChH----------------Hhc-----CCcc-------------cc---
Confidence 899998765 89999 899997 888887621 000 0000 00
Q ss_pred hHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHH
Q psy17090 150 IIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIK 229 (373)
Q Consensus 150 ~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~ 229 (373)
..++.-+..+-.+|+|.+|++ |...+.+.|+||++.
T Consensus 212 -------------------------------------~~ie~~~~dgr~~~~gt~~~l-----g~~~s~~~g~~y~~~-- 247 (477)
T 1hc7_A 212 -------------------------------------TTIEALMKDGKALQAGTSHYL-----GENFARAFDIKFQDR-- 247 (477)
T ss_dssp -------------------------------------EEEEEECTTSCEEEEEEEEEE-----ETHHHHHTTCEEECT--
T ss_pred -------------------------------------eEEEEEcCCCcEEEEeeeEEc-----ccccccccCeEEECC--
Confidence 000000011234789999985 223588999999763
Q ss_pred hhcC-CCCCeeeeechHHHHHHHHHhh-----c-CCCCCCCCceEEEEEcCc-----hhHHHHHHHHHHHHHcCCeEEEE
Q psy17090 230 KFSN-KFVPASGFAIGIERLIELIKKI-----N-INHNFSHQCDIYIVHVGK-----EAELKAFVLSENLRTLGLKVILN 297 (373)
Q Consensus 230 ~f~~-~~~pavGfai~le~l~~~l~~~-----~-~~~~~~~~~~v~v~~~~~-----~~~~~~~~la~~Lr~~Gi~v~~~ 297 (373)
-|. ...+++||+++ +|++.+|.+. + .+|++.+|.+|+|+|.+. .....+.++++.||++|++|+++
T Consensus 248 -~G~~~~~~~~~~Gig-eRli~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D 325 (477)
T 1hc7_A 248 -DLQVKYVHTTSWGLS-WRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLD 325 (477)
T ss_dssp -TSCEEECEEEEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred -CCCEEeeeEeeccHH-HHHHHHHHHHhCccccccCCcccCCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 222 13568899999 9999999664 2 456677899999999975 56788999999999999999999
Q ss_pred ec-cCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 298 CV-FNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 298 ~~-~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
++ + .++++++++|+..|+|++|+||++|+++|+|+||+++ + ++..|+++++++.+.+.+
T Consensus 326 ~~~~----~s~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~------eq~~v~~~el~~~l~~~l 385 (477)
T 1hc7_A 326 DRDQ----HTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRL-G------GKETLPLAALPEALPGKL 385 (477)
T ss_dssp CCSS----SCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETT-S------CCCEEEGGGHHHHHHHHH
T ss_pred CCCC----CCHHHHHHHHhhcCCCEEEEECcchhcCCEEEEEEec-C------ceEEEeHHHHHHHHHHHH
Confidence 87 6 8999999999999999999999999999999999999 9 999999999999987655
No 22
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=2.5e-33 Score=278.22 Aligned_cols=272 Identities=15% Similarity=0.127 Sum_probs=219.6
Q ss_pred CeEeeecCC----CceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCC-CCC--CCccee-eeEEEEEcCC
Q psy17090 1 MYSFIDELN----GDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERP-QYG--RYRQFY-QIGVEAIGFP 71 (373)
Q Consensus 1 m~~f~D~~~----G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~-~~g--r~ref~-Q~g~eiig~~ 71 (373)
||+|.|. + |+.++|||+.|++++|+++.+.. ++++|+|+||+|+|||+|++ +.| |.|||+ |+|++++|.+
T Consensus 85 my~~~d~-g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~ 163 (459)
T 1nj8_A 85 VYWVTHG-GKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHST 163 (459)
T ss_dssp CEEEEES-SSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESS
T ss_pred hEEEecc-CcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECC
Confidence 7999998 6 89999999999999999986543 23689999999999999998 778 999999 9999999998
Q ss_pred CchhhHH---HHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccC
Q psy17090 72 GPDIDAE---LIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN 148 (373)
Q Consensus 72 ~~~~d~E---vi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~ 148 (373)
...+|+| +|.++.++++.||++ +.+.+++.. ++ .. .
T Consensus 164 ~~~a~~e~~~~i~~~~~~~~~LGl~-~~~~~~~~~--------------------ek--~~---------------g--- 202 (459)
T 1nj8_A 164 KEEAENQVKEAISIYKKFFDTLGIP-YLISKRPEW--------------------DK--FP---------------G--- 202 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC-CEEEEECTT--------------------SC--CT---------------T---
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCc-eEEeecCch--------------------hh--cC---------------C---
Confidence 8888888 899999999999997 777776420 00 00 0
Q ss_pred hhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhH
Q psy17090 149 LIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLI 228 (373)
Q Consensus 149 ~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~ 228 (373)
++. ...++..+.-|..++.|.+|+. |...+.+.|+||++--
T Consensus 203 ---------a~~-------------------------~~~ie~~~~dg~~~e~gt~~~l-----g~~~s~~~~~~Y~~~~ 243 (459)
T 1nj8_A 203 ---------AEY-------------------------TMAFDTIFPDGRTMQIATVHNL-----GQNFSKTFEIIFETPT 243 (459)
T ss_dssp ---------CSE-------------------------EEEEEEECTTSCEEEEEEEEEE-----ETHHHHHTTCEEECTT
T ss_pred ---------ccc-------------------------ceeEEEEcCCCcEEEEEEEeec-----ccccccccCeEEECCC
Confidence 000 0011111112556778888764 2235788999998631
Q ss_pred HhhcC-CCCCeeeeechHHHHHHHHHhh-c-----CCCCCCCCceEEEEEc-C-c---hhHHHHHHHHHHHHHcCCeEEE
Q psy17090 229 KKFSN-KFVPASGFAIGIERLIELIKKI-N-----INHNFSHQCDIYIVHV-G-K---EAELKAFVLSENLRTLGLKVIL 296 (373)
Q Consensus 229 ~~f~~-~~~pavGfai~le~l~~~l~~~-~-----~~~~~~~~~~v~v~~~-~-~---~~~~~~~~la~~Lr~~Gi~v~~ 296 (373)
|. ...+++||+++ +|++.++.+. + ..|++.+|.+|+|+|. + + .....|.++++.||++ ++|++
T Consensus 244 ---G~~~~v~~~~~Gig-eRli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~ 318 (459)
T 1nj8_A 244 ---GDKDYAYQTCYGIS-DRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHI 318 (459)
T ss_dssp ---SSEEECEEEEEEEC-THHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHHTT-SCEEE
T ss_pred ---CCEeeeeEeeccHH-HHHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCcHHHHHHHHHHHHHHHhhh-cEEEE
Confidence 22 13578899999 9999999654 2 4566788999999999 5 3 5678899999999999 99999
Q ss_pred EeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 297 NCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 297 ~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
++++ .++++++++|+..|+|++|+||++|+++|+|+||+++++ ++..|+++++++.+.+.+.
T Consensus 319 D~~~----~~~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~------eq~~v~~~el~~~l~~~l~ 380 (459)
T 1nj8_A 319 DDRD----IRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTM------EKFQVDETQLMEVVEKTLN 380 (459)
T ss_dssp CCSC----SCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTTC------CEEEEETTSHHHHHHHHHH
T ss_pred ECCC----CCHHHHHHHHHHcCCCEEEEECcchhcCCEEEEEECCCC------ceEEEeHHHHHHHHHHHHH
Confidence 9887 899999999999999999999999999999999999999 9999999999999877653
No 23
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=8.5e-35 Score=300.01 Aligned_cols=325 Identities=17% Similarity=0.125 Sum_probs=191.4
Q ss_pred CCceEeecCCChHHH----HHHHHHhcCCCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCCch-------
Q psy17090 9 NGDNLSLRPEGTASV----IRSVIENNLIYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPD------- 74 (373)
Q Consensus 9 ~G~~l~LRpD~T~~i----aR~~~~~~~~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~~~------- 74 (373)
+|+.+.|||+.|.++ +|.+..+. ..+|+++||+|++||+| +|+.| |.|||+|+++|+|+.++..
T Consensus 236 ~~~~~~LRPEtaqg~f~~f~r~~~~~~--~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~ 313 (693)
T 2zt5_A 236 GNMPGYLRPETAQGIFLNFKRLLEFNQ--GKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQN 313 (693)
T ss_dssp SSSEEEECSCSHHHHHTTHHHHHHHTT--TCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGG
T ss_pred CCcceeeccccchHHHHHHHHHHHHhC--cCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHH
Confidence 578999999999998 89887653 36899999999999999 99999 9999999999999976543
Q ss_pred -hhHH------------------------------------HHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHH--
Q psy17090 75 -IDAE------------------------------------LIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDL-- 115 (373)
Q Consensus 75 -~d~E------------------------------------vi~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l-- 115 (373)
.|+| +|.++.+++..+|++...+++... ..+++..+...+
T Consensus 314 v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~-~~~e~a~ya~~~~d 392 (693)
T 2zt5_A 314 VADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQH-MENEMAHYACDCWD 392 (693)
T ss_dssp TTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEEC-CGGGSCTTCSSEEE
T ss_pred HHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEecc-Cchhhccchhhhhh
Confidence 2322 889999999999996544443211 011100000000
Q ss_pred HHHHHhccc-c-cc----ccHHHHH--Hhhhchhhhh----------cc-----cChhHHHHHhhChhhHhhhhHhHHHH
Q psy17090 116 INYIKKHKD-S-KW----FCEDIKH--SLYLNSLRVL----------DS-----KNLIIREILINAPKLLDYLEKDSLDH 172 (373)
Q Consensus 116 ~~~l~~~~~-~-~~----l~~~~~~--~l~~~~~~~l----------~~-----~~~~~~~~l~~~~~l~~~~~~~~~~~ 172 (373)
.+++..... . .+ .+-+... .-..+++.++ +. ...-...+...+|.+.+.++.++..+
T Consensus 393 ~e~~~~~g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~ 472 (693)
T 2zt5_A 393 AESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECY 472 (693)
T ss_dssp EEEEETTEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC-----------------------------------------
T ss_pred ehhhccCChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHhhhhhHHH
Confidence 000000000 0 00 0000000 0001111110 00 00112334455677777777778888
Q ss_pred HHHHHHHHHhCC-CcEEEecCCCCCCCCccceEEEEEeCCCCCc--cceeccCccchhHHhhcCCCCCee-eeechHHHH
Q psy17090 173 FYGIQKILNYNN-ISYKINTKLVRGMDYYNRTVFEWTTDKLGSQ--NSICGGGRYDFLIKKFSNKFVPAS-GFAIGIERL 248 (373)
Q Consensus 173 l~~l~~~l~~~g-~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~--~~ia~GGRYD~L~~~f~~~~~pav-Gfai~le~l 248 (373)
+.++...|...| +.+.+| |++|++..+..+.. ..-..|||| +|+| |+|+|++||
T Consensus 473 ~~~l~~~L~~~g~i~i~vd-----------Gt~Fei~~~~~~~~~y~~~~~Ggry-----------~P~Vi~~s~GigRl 530 (693)
T 2zt5_A 473 ITEMEMLLNEKGEFTIETE-----------GKTFQLTKDMINVKRFQKTLYVEEV-----------VPNVIEPSFGLGRI 530 (693)
T ss_dssp --------------------------------------------------CCEEE-----------CCEEEEEEEEHHHH
T ss_pred HHHHHHHHHhcCCEEEEEC-----------CEEEEecccccceeeEEeccCCcEe-----------cCcceeCeehHHHH
Confidence 888888888888 455555 68888854211100 011245565 7888 999999999
Q ss_pred HHHHHhh-------------cCCCCCCCCceEEEEEcCch--hHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHH
Q psy17090 249 IELIKKI-------------NINHNFSHQCDIYIVHVGKE--AELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR 313 (373)
Q Consensus 249 ~~~l~~~-------------~~~~~~~~~~~v~v~~~~~~--~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~ 313 (373)
+.++.+. ..+|++.+|++|+|++.+.. ....+.++++.||++|++|++++++ .++++++++
T Consensus 531 i~aLie~~~~~~~~~~~r~g~~~P~~lAP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~----~sigkk~k~ 606 (693)
T 2zt5_A 531 MYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSS----GSIGRRYAR 606 (693)
T ss_dssp HHHHHHHHEEECSSTTCCEEECCCTTTSSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCC----SCHHHHHHH
T ss_pred HHHHHHHhccccccccccccccCCCCCCCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHH
Confidence 9999664 23466778899999999854 6789999999999999999999877 899999999
Q ss_pred HHHcCCCEEEEEccCcc--cCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 314 ANASNANFAAIIGENEI--INNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 314 a~~~gi~~~vivg~~e~--~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
|++.|+||+|+||++|+ ++|+|+||+++++ +|..|++++++++|.+.+.
T Consensus 607 Ad~~G~p~~IiIG~~El~~~~g~Vtvr~r~t~------eq~~v~l~el~~~l~~~l~ 657 (693)
T 2zt5_A 607 TDEIGVAFGVTIDFDTVNKTPHTATLRDRDSM------RQIRAEISELPSIVQDLAN 657 (693)
T ss_dssp HHHTTCCEEEEECHHHHTSSSCEEEEEETTTC------CEEEEETTTHHHHHHHHHT
T ss_pred HHHcCCCEEEEEcchhhhccCCEEEEEECCCC------ceEEEeHHHHHHHHHHHHh
Confidence 99999999999999999 9999999999999 9999999999999987653
No 24
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=1.2e-32 Score=275.69 Aligned_cols=273 Identities=14% Similarity=0.150 Sum_probs=221.8
Q ss_pred CeEeeecCC----CceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCC-CCC--CCccee-eeEEEEEcCC
Q psy17090 1 MYSFIDELN----GDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERP-QYG--RYRQFY-QIGVEAIGFP 71 (373)
Q Consensus 1 m~~f~D~~~----G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~-~~g--r~ref~-Q~g~eiig~~ 71 (373)
||+|.|. + |+.++|||+.|++++|+++.+.. +.++|+|+||+|+|||+|++ +.| |.|||+ |+++++++.+
T Consensus 117 my~~~d~-g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~ 195 (501)
T 1nj1_A 117 VYWVTHG-GLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHAT 195 (501)
T ss_dssp CCEEEEE-TTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESS
T ss_pred eEEEecC-CCcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECC
Confidence 7999887 6 78999999999999999997754 33689999999999999988 778 999999 9999999988
Q ss_pred CchhhHHH---HHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccC
Q psy17090 72 GPDIDAEL---IIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN 148 (373)
Q Consensus 72 ~~~~d~Ev---i~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~ 148 (373)
...+++|+ +.++.++++.||++ +.+.++..+ +. +..
T Consensus 196 ~e~a~~e~~~~l~~~~~i~~~Lgl~-~~~~~~~~~--------------------e~-~~~------------------- 234 (501)
T 1nj1_A 196 ASEAEEQVERAVEIYKEFFNSLGIP-YLITRRPPW--------------------DK-FPG------------------- 234 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC-CEEEECCTT--------------------TS-CTT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCe-EEEEeCCch--------------------hh-cCC-------------------
Confidence 77888885 99999999999997 787766421 00 000
Q ss_pred hhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhH
Q psy17090 149 LIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLI 228 (373)
Q Consensus 149 ~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~ 228 (373)
++. ...++..++.|..++.|.+|.+ |...+.+.|+||++-
T Consensus 235 ---------a~~-------------------------~~die~~l~~g~~~ei~t~~~l-----g~~~a~~~~~ry~~~- 274 (501)
T 1nj1_A 235 ---------SEY-------------------------TVAFDTLMPDGKTLQIGTVHNL-----GQTFARTFEIKFETP- 274 (501)
T ss_dssp ---------CSE-------------------------EEEEEEECTTSCEEEEEEEEEE-----ETHHHHHHTCEEECT-
T ss_pred ---------ccc-------------------------ceEEEEEcCCCCEEEEEEEEec-----cccchhhcCeEEECC-
Confidence 000 0234444444667778888765 223578899999862
Q ss_pred HhhcCC-CCCeeeeechHHHHHHHHHhh-c-----CCCCCCCCceEEEEEc-C-c---hhHHHHHHHHHHHHHcCCeEEE
Q psy17090 229 KKFSNK-FVPASGFAIGIERLIELIKKI-N-----INHNFSHQCDIYIVHV-G-K---EAELKAFVLSENLRTLGLKVIL 296 (373)
Q Consensus 229 ~~f~~~-~~pavGfai~le~l~~~l~~~-~-----~~~~~~~~~~v~v~~~-~-~---~~~~~~~~la~~Lr~~Gi~v~~ 296 (373)
. |+. ..+++||+++ +|++.++.+. + ..|++.+|.+|+|+|. + . .....|.++++.||++|++|++
T Consensus 275 -~-g~~~~~h~~g~Gig-eRli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~ 351 (501)
T 1nj1_A 275 -E-GDHEYVHQTCYGLS-DRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHL 351 (501)
T ss_dssp -T-SCEEECEEEEEEEC-THHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred -C-CCEEeeeeccccHH-HHHHHHHHHHcCcccCccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEE
Confidence 2 322 2457899999 9999999764 2 3566778999999999 5 4 5678899999999999999999
Q ss_pred EeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 297 NCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 297 ~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
++++ .++++++++|+..|+|++|+||++|+++|+|+||+++++ ++..|+++++++.|.+.+.
T Consensus 352 D~~~----~s~g~k~~~a~~~G~p~~iiiG~~e~~~~~V~vr~r~t~------eq~~v~~~el~~~l~~~l~ 413 (501)
T 1nj1_A 352 DDRD----IRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTG------EKVTADLQGIEETLRELMK 413 (501)
T ss_dssp CCCS----SCHHHHHHHHHHEECSEEEEECHHHHTTTEEEEEESSSC------CEEEEETTTHHHHHHHHHH
T ss_pred ECCC----CCHHHHHHHHHhcCCCEEEEECcchhhCCEEEEEECCCC------ceEEEeHHHHHHHHHHHHH
Confidence 9887 899999999999999999999999999999999999999 9999999999999876553
No 25
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.96 E-value=1.9e-29 Score=252.71 Aligned_cols=286 Identities=17% Similarity=0.174 Sum_probs=200.3
Q ss_pred CceEeecCCChHHH----HHHHHHhcCCCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCCchh--hHHHH
Q psy17090 10 GDNLSLRPEGTASV----IRSVIENNLIYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPDI--DAELI 80 (373)
Q Consensus 10 G~~l~LRpD~T~~i----aR~~~~~~~~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~~~~--d~Evi 80 (373)
++.+.|||+.|.++ +|.+.++. +++|+|+|++|++||+| +|+.| |.|||+|.++++++.++... +++++
T Consensus 180 ~~~~~LRPE~t~~i~~~~~~~~~sy~--r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i 257 (505)
T 1ati_A 180 GLLAYLRPETAQGIFVNFKNVLDATS--RKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWV 257 (505)
T ss_dssp GGEEEECSSSHHHHHHTHHHHHHHHT--CCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHH
T ss_pred ccceeecccchhHHHHHHHHHHHhcC--CCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHH
Confidence 56899999999999 78777652 25899999999999999 88889 99999999999999877654 79999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHhhChh
Q psy17090 81 IMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPK 160 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~ 160 (373)
.++.++++.||++...+.+...+ +.. +..- .+..| .- +.+.......+.... ..+.
T Consensus 258 ~~~~~i~~~LGl~~~~v~~~~~~--~~~---------~~~~-~~~~~-d~---E~~~p~~~~e~~g~~--------~~~d 313 (505)
T 1ati_A 258 EERLKWWQEMGLSRENLVPYQQP--PES---------SAHY-AKATV-DI---LYRFPHGSLELEGIA--------QRTD 313 (505)
T ss_dssp HHHHHHHHHTTCCGGGEEEEECC--TTT---------SCTT-CSEEE-EE---EEEETTEEEEEEEEE--------ECTT
T ss_pred HHHHHHHHHcCCCeEEEEECCCC--hHh---------hhcc-cHHHH-hH---HhhcCCCCccchhhh--------cccc
Confidence 99999999999976555543221 000 0000 00000 00 000000000000000 0000
Q ss_pred hHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcCCCCC-ee
Q psy17090 161 LLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVP-AS 239 (373)
Q Consensus 161 l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~p-av 239 (373)
.+ |..-.......++.+.+|+ +-|+++.|+..... +|+|| .| ++
T Consensus 314 ------~~----L~~~~~~~~~~~~~~~~~~------n~~~~~~~~y~d~~--------g~~~y-----------~p~vi 358 (505)
T 1ati_A 314 ------FD----LGSHTKDQEALGITARVLR------NEHSTQRLAYRDPE--------TGKWF-----------VPYVI 358 (505)
T ss_dssp ------HH----HHHHCSSTTTTTCCSCCCC------CSCCCSCCCEECSS--------SCCEE-----------CCEEE
T ss_pred ------ee----cchhhccccccceeeeecc------cccceeEEEEEcCC--------CCeee-----------cceEE
Confidence 00 1000000000011112222 33788887765331 45676 45 89
Q ss_pred eeechHHHHHHHHHhh---------c------CCCCCCCCceEEEEEcCc---hhHHHHHHHHHHHHHcC-CeEEEEecc
Q psy17090 240 GFAIGIERLIELIKKI---------N------INHNFSHQCDIYIVHVGK---EAELKAFVLSENLRTLG-LKVILNCVF 300 (373)
Q Consensus 240 Gfai~le~l~~~l~~~---------~------~~~~~~~~~~v~v~~~~~---~~~~~~~~la~~Lr~~G-i~v~~~~~~ 300 (373)
|+|+|+||++.++.+. + ..|++.+|++|+|++.+. .....|.++++.||++| ++|++++.
T Consensus 359 g~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~- 437 (505)
T 1ati_A 359 EPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT- 437 (505)
T ss_dssp EEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC-
T ss_pred EEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC-
Confidence 9999999999888754 2 245566889999999986 67788999999999999 99987654
Q ss_pred CccccCHHHHHHHHHHcCCCEEEEEccCccc---------CCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 301 NNIHESFKSQMKRANASNANFAAIIGENEII---------NNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 301 ~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~---------~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
.++++++++|++.|+||+|+||++|++ +|+|+||+++++ +|..|+++|+++++.+.+
T Consensus 438 ----~sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g~V~vr~r~t~------~q~~v~~~el~~~l~~~l 503 (505)
T 1ati_A 438 ----GNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTM------EQIRLHVDELEGFLRERL 503 (505)
T ss_dssp ----SCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTC------CEEEEEHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCCEEEEEECCCC------ceEEEEHHHHHHHHHHHh
Confidence 699999999999999999999999999 999999999999 999999999999998654
No 26
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.94 E-value=6.3e-25 Score=219.25 Aligned_cols=276 Identities=11% Similarity=0.106 Sum_probs=190.4
Q ss_pred CeEeeecCCCc----eEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGD----NLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~----~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~ 72 (373)
||.|.|. +++ .++|||+.|++++++++.... ++++|+|+|++|+|||+| +++.| |.|||+|.++++++.+.
T Consensus 108 my~~~d~-g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~ 186 (519)
T 4hvc_A 108 VAWVTRS-GKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATM 186 (519)
T ss_dssp CEEEEEE-TTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSH
T ss_pred ceEEecc-CCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCH
Confidence 7889888 754 699999999999999987543 236899999999999999 77788 99999999999988887
Q ss_pred chhhHHH---HHHHHHHHHHC-CCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccC
Q psy17090 73 PDIDAEL---IIMCSRLWKNL-NLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN 148 (373)
Q Consensus 73 ~~~d~Ev---i~l~~~~l~~l-g~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~ 148 (373)
..++.|+ +.+..++++.| +++ +.+...+.+- .++.. +.. ..++.+
T Consensus 187 e~a~~E~~~~l~~~~~i~~~ll~lp-~~~~~~t~~e------------~~~Ga--~~t------------~~iEa~---- 235 (519)
T 4hvc_A 187 EEAAEEVLQILDLYAQVYEELLAIP-VVKGRKTEKE------------KFAGG--DYT------------TTIEAF---- 235 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCC-CEEEECCTTT------------SCTTS--SEE------------EEEEEE----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ceeeecCCcc------------ccCCc--hhh------------eeeeee----
Confidence 7788775 56778899987 775 4443333210 00000 000 000000
Q ss_pred hhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCc-E-EEecCCCCCCCCccceEEEEEeCCCCCccceeccCccch
Q psy17090 149 LIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNIS-Y-KINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDF 226 (373)
Q Consensus 149 ~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~-i-~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~ 226 (373)
.|..- +.+.+. + +++..+.+.+ ++.| .+..+ .|-++
T Consensus 236 ---------~p~~g------------------r~~q~gT~~~Lg~~~s~~~----~i~y---~d~~~------~g~~~-- 273 (519)
T 4hvc_A 236 ---------ISASG------------------RAIQGGTSHHLGQNFSKMF----EIVF---EDPKI------PGEKQ-- 273 (519)
T ss_dssp ---------ETTTT------------------EEEEEEEEEEEETHHHHHH----TCEE---ECTTS------TTCEE--
T ss_pred ---------eccCC------------------CEEeecccccccchhhhhc----CcEE---ecccc------CCCEE--
Confidence 00000 000000 0 1111101000 1111 11000 01000
Q ss_pred hHHhhcCCCCCeeeeechHHHHHHHHHhh-----c-CCCCCCCCceEEEEEcCc----------hhHHHHHHHHHHHHHc
Q psy17090 227 LIKKFSNKFVPASGFAIGIERLIELIKKI-----N-INHNFSHQCDIYIVHVGK----------EAELKAFVLSENLRTL 290 (373)
Q Consensus 227 L~~~f~~~~~pavGfai~le~l~~~l~~~-----~-~~~~~~~~~~v~v~~~~~----------~~~~~~~~la~~Lr~~ 290 (373)
.+.-.+|+++ +|++.+|.+. + ..|++.+|.+|.|+|++. .....|.++++.|+++
T Consensus 274 --------~vh~~~~Gi~-~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~ 344 (519)
T 4hvc_A 274 --------FAYQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSV 344 (519)
T ss_dssp --------ECEEEEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------EEEEccccHH-HHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHC
Confidence 1112245566 9999999874 3 357789999999999972 3567889999999999
Q ss_pred CCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 291 GLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 291 Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
|++|++++++. .++++++++|+..|+|++|+||++|+++|+|+||+++++ ++..|+++++++.+.+.+.
T Consensus 345 Girv~~Ddr~~---~s~G~K~~~ael~GiP~~ivIG~kele~g~V~vr~R~tg------eq~~v~~~el~~~l~~ll~ 413 (519)
T 4hvc_A 345 NIRVRADLRDN---YSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTG------EKLTVAENEAETKLQAILE 413 (519)
T ss_dssp TCCEEECCCSS---SCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTC------CEEEEEGGGHHHHHHHHHH
T ss_pred CCEEEEECCCC---CCHHHHHHHHHhcCCCEEEEECchhhcCCeEEEEECCCC------CccceeHHHHHHHHHHHHH
Confidence 99999998861 389999999999999999999999999999999999999 9999999999999876543
No 27
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.92 E-value=7.1e-24 Score=211.15 Aligned_cols=254 Identities=15% Similarity=0.185 Sum_probs=181.8
Q ss_pred CeEeeecCC----CceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecC-CCCCC--CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELN----GDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~----G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~-~~~~g--r~ref~Q~g~eiig~~~ 72 (373)
||.|.|. + |+.++|||+.|++++++++.... ++++|+|+|++|+|||+| +|+.| |.|||+|.++++||.+.
T Consensus 102 my~v~d~-g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~ 180 (518)
T 3ial_A 102 CFWVEKG-GLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATA 180 (518)
T ss_dssp CEEEEEE-TTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSH
T ss_pred EEEEecC-CCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCH
Confidence 7999987 6 68999999999999999986543 246899999999999999 77788 99999999999999877
Q ss_pred chhhHHHHH---HHHHHH-HHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccC
Q psy17090 73 PDIDAELII---MCSRLW-KNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN 148 (373)
Q Consensus 73 ~~~d~Evi~---l~~~~l-~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~ 148 (373)
..++.|+.. +..+++ +.||++ +.+..-.. . +. ...
T Consensus 181 e~a~~e~~~~l~~~~~i~~~~LGlp-~~~~~~~~-----------------~---e~--~~g------------------ 219 (518)
T 3ial_A 181 EDAVSQLSDYWKVIDTIFSDELCFK-GQKLRRVC-----------------W---DR--FPG------------------ 219 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCC-CEEEEECG-----------------G---GC--CTT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-EEeeecCh-----------------h---hc--cCC------------------
Confidence 778877655 468999 999996 43321000 0 00 000
Q ss_pred hhHHHHHhhChhhHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhH
Q psy17090 149 LIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLI 228 (373)
Q Consensus 149 ~~~~~~l~~~~~l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~ 228 (373)
+ . ..+.+|.-+.-|-..=.|.+|..- +++.
T Consensus 220 ---------A-----------------------~--yt~~iE~~~pdgr~ie~gt~~~Lg----------------~~~s 249 (518)
T 3ial_A 220 ---------A-----------------------D--YSEVSDVVMPCGRVLQTAGIHNLG----------------QRFS 249 (518)
T ss_dssp ---------C-----------------------S--EEEEEEEECTTSCEEEEEEEEEEE----------------THHH
T ss_pred ---------C-----------------------c--cceEEEEEcCCCCEEEEeceeccc----------------chhh
Confidence 0 0 001111100000000001111100 0111
Q ss_pred Hhhc-------C----CCCCeeeeechHHHHHHHHHhh-c-----CCCCCCCCceEEEEEcC----------chhHHHHH
Q psy17090 229 KKFS-------N----KFVPASGFAIGIERLIELIKKI-N-----INHNFSHQCDIYIVHVG----------KEAELKAF 281 (373)
Q Consensus 229 ~~f~-------~----~~~pavGfai~le~l~~~l~~~-~-----~~~~~~~~~~v~v~~~~----------~~~~~~~~ 281 (373)
++|+ | ...++.|. + +|++.++.+. + .+|++.+|.+|.|+|++ +.....+.
T Consensus 250 ~rf~i~y~d~~g~~~~~h~~~~G~--~-~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~ 326 (518)
T 3ial_A 250 STFDILYANKANESVHPYLTCAGI--S-TRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVN 326 (518)
T ss_dssp HHTTCCEECTTCCEECCEEEEEEE--E-THHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHH
T ss_pred hhcCcEEECCCCCEeeeEEeccch--H-HHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHH
Confidence 1111 0 11234443 3 9999888764 2 45778999999999987 23567889
Q ss_pred HHHHHHHHc-CCeEEEEec-cCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCcc--ceeecHH
Q psy17090 282 VLSENLRTL-GLKVILNCV-FNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLK--QISISFK 357 (373)
Q Consensus 282 ~la~~Lr~~-Gi~v~~~~~-~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~--~~~v~~~ 357 (373)
++++.|+++ |++|+++.+ + .++++++++|+..|+|+.|+||++++++|+|+|++++++ + +..|+++
T Consensus 327 ~l~~~L~~~~Girv~~Ddr~~----~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~------~~~k~~v~~~ 396 (518)
T 3ial_A 327 EIADTLKSKLGLRVSIDDDFS----KSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVG------KDQKRVIPIT 396 (518)
T ss_dssp HHHHHHHHTTCCCEEECCCTT----SCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTC------GGGCEEEEHH
T ss_pred HHHHHHHhccCeEEEEECCCC----CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCC------ccceeEeeHH
Confidence 999999999 999999988 5 899999999999999999999999999999999999999 8 9999999
Q ss_pred HH
Q psy17090 358 DA 359 (373)
Q Consensus 358 el 359 (373)
++
T Consensus 397 el 398 (518)
T 3ial_A 397 EV 398 (518)
T ss_dssp HH
T ss_pred HH
Confidence 99
No 28
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.81 E-value=4.9e-19 Score=174.78 Aligned_cols=123 Identities=11% Similarity=0.131 Sum_probs=105.1
Q ss_pred CCee-eeechHHHHH-HHHHhh----------c--------CCCCCCCCceEEEE-EcC--chhHHHHHHHHHHHHHcCC
Q psy17090 236 VPAS-GFAIGIERLI-ELIKKI----------N--------INHNFSHQCDIYIV-HVG--KEAELKAFVLSENLRTLGL 292 (373)
Q Consensus 236 ~pav-Gfai~le~l~-~~l~~~----------~--------~~~~~~~~~~v~v~-~~~--~~~~~~~~~la~~Lr~~Gi 292 (373)
+|.| ..++|++|++ .++.+. | .+|++.+|.+|+|+ +.+ +.....|.++++.||++|+
T Consensus 290 ~P~vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi 369 (454)
T 1g5h_A 290 VPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGI 369 (454)
T ss_dssp CCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred eeEEEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHHHHHHHCCC
Confidence 4655 7789999997 444432 2 45778999999999 765 5567889999999999999
Q ss_pred eEE--EEec-cCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 293 KVI--LNCV-FNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 293 ~v~--~~~~-~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
+|+ ++.+ + .++++++++|++.|+||+|+||++|+++|+|+||+++++ +|..|+++++++.|.+.+.
T Consensus 370 ~v~~~~Ddr~~----~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~------eq~~v~l~el~~~l~~~l~ 438 (454)
T 1g5h_A 370 SVWPGYSETVH----SSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTT------MKEMMHISKLRDFLVKYLA 438 (454)
T ss_dssp CEEEGGGSCCC----SCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTC------CEEEEETTSHHHHHHHHHH
T ss_pred EEEEEecCCCC----CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCC------cEEEEEHHHHHHHHHHHHh
Confidence 996 6554 4 799999999999999999999999999999999999999 9999999999999987653
No 29
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.80 E-value=3.3e-18 Score=167.13 Aligned_cols=268 Identities=11% Similarity=0.057 Sum_probs=166.7
Q ss_pred EeecCCChHHHHHHHHHhc-CCC-CCCeeEEEeeceeecCC----CCCC--CCcceeeeEEEEEcCCCchh--hHHHHHH
Q psy17090 13 LSLRPEGTASVIRSVIENN-LIY-DGPKRLWYSGPMFRHER----PQYG--RYRQFYQIGVEAIGFPGPDI--DAELIIM 82 (373)
Q Consensus 13 l~LRpD~T~~iaR~~~~~~-~~~-~~p~k~~y~g~vfR~~~----~~~g--r~ref~Q~g~eiig~~~~~~--d~Evi~l 82 (373)
+.|||+....+.-.+.+.. .++ .+|++++++|++||+|. +..| |.|||+|..+++|..++... -..++..
T Consensus 147 ~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~ 226 (459)
T 3ikl_A 147 GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRH 226 (459)
T ss_dssp TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHH
Confidence 5899986665544433211 123 68999999999999984 3334 78999999999998765432 2557888
Q ss_pred HHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhc-cc-cccccHHHHHHhhhchhhhhcccChhHHHHHhhChh
Q psy17090 83 CSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKH-KD-SKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPK 160 (373)
Q Consensus 83 ~~~~l~~lg~~~~~i~i~~~~~~~~~~~~~~~l~~~l~~~-~~-~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~ 160 (373)
+.++++.||++...+++.... .+. ... .+ +.+++.- ..-+. .
T Consensus 227 ~~~~~~~LGi~~~~~r~~~~~-~ee------------A~~~~DiE~~~p~G---------~~E~~--------------g 270 (459)
T 3ikl_A 227 RLQWWRKFAMSPSNFSSSDCQ-DEE------------GRKGNKLYYNFPWG---------KELIE--------------T 270 (459)
T ss_dssp HHHHHHHHCSSGGGEEEEEEC-CSS------------SSCEEEEEEECSSC---------EEEEE--------------E
T ss_pred HHHHHHHhCCChhhEEEeecC-chH------------HHhhcCeEEEcCCc---------eEEEe--------------e
Confidence 899999999954333332210 000 000 00 0000000 00000 0
Q ss_pred hHhhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHHhhcCCCCC-ee
Q psy17090 161 LLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVP-AS 239 (373)
Q Consensus 161 l~~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~~f~~~~~p-av 239 (373)
+.+..+- .|.+.. + ..+..|- + .+ | ..+.+| .+
T Consensus 271 ~sn~tDf----qL~~~~---~------------~~~~~~~-~-------~d---------g----------~~k~~P~vi 304 (459)
T 3ikl_A 271 LWNLGDH----ELLHMY---P------------GNVSKLH-G-------RD---------G----------RKNVVPCVL 304 (459)
T ss_dssp EEEEETH----HHHHHS---C------------SCSSSSC-C-------BS---------S----------SCBCCCEEE
T ss_pred eeccchh----hhhccc---c------------ccCceeE-c-------cC---------C----------CeeeeeEEE
Confidence 0000000 001100 0 0011110 0 00 0 011234 44
Q ss_pred eeechHHHHHHHHHhh-------------------cCCCCCCCCceEEEEEcC---chhHHHHHHHHHHHHHcCCeEEEE
Q psy17090 240 GFAIGIERLIELIKKI-------------------NINHNFSHQCDIYIVHVG---KEAELKAFVLSENLRTLGLKVILN 297 (373)
Q Consensus 240 Gfai~le~l~~~l~~~-------------------~~~~~~~~~~~v~v~~~~---~~~~~~~~~la~~Lr~~Gi~v~~~ 297 (373)
..+++++|++.++.+. ..+|+|.+|++|.|+... +.....|.++++.|+++|++|+++
T Consensus 305 ~~s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d 384 (459)
T 3ikl_A 305 SVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPG 384 (459)
T ss_dssp EEEEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEECG
T ss_pred EecccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 6788999976554432 235778999999988332 446788999999999999999944
Q ss_pred eccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHHHHHHHHHh
Q psy17090 298 CVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIK 369 (373)
Q Consensus 298 ~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~~~ 369 (373)
+++ +...++++++++|++.|+||+|+||++|+++|+|+||+++++ +|..|+++|++++|.+.+.-
T Consensus 385 ~Dd-r~~~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtg------eq~~v~ldeli~~l~~~i~~ 449 (459)
T 3ikl_A 385 YLE-TMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTT------MKEMMHISKLKDFLIKYISS 449 (459)
T ss_dssp GGS-SSCCTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTC------CCCCEETTHHHHHHHHHHHH
T ss_pred ecC-CcCCCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCC------ceEEEEHHHHHHHHHHHHhh
Confidence 332 001799999999999999999999999999999999999999 99999999999999887653
No 30
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.47 E-value=2.9e-13 Score=109.40 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=91.3
Q ss_pred CCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEec--cCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEE
Q psy17090 262 SHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCV--FNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKD 339 (373)
Q Consensus 262 ~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~--~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v~Vk~ 339 (373)
..|.||.|+|++.....+|.++++.|++.|++|++++. . .+++++++.|...++||+++||++|.++++|+||.
T Consensus 6 ~~P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~----e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsVR~ 81 (130)
T 1v95_A 6 SGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTE----VSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNI 81 (130)
T ss_dssp CCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTS----SCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEE
T ss_pred CCCCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCC----CcHHHHHHHHHHcCCCEEEEEechHHhcCeeEEEe
Confidence 45789999999988899999999999999999999996 6 89999999999999999999999999999999999
Q ss_pred CCC--CCCCCCccceeecHHHHHHHHHHHHHh
Q psy17090 340 LRN--KYEDPTLKQISISFKDAENYFYKKIIK 369 (373)
Q Consensus 340 l~~--~~~~~~~~~~~v~~~el~~~l~~~~~~ 369 (373)
+.. + +...++++|++..|...+..
T Consensus 82 r~~~~~------e~~~m~lde~i~~l~~~~~~ 107 (130)
T 1v95_A 82 MFGTPQ------EHRNMPQADAMVLVARNYER 107 (130)
T ss_dssp CSSSCC------EEEEEEHHHHHHHHHHHHHH
T ss_pred cCCCCC------ccCccCHHHHHHHHHHHHHH
Confidence 987 6 88899999999999887754
No 31
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.27 E-value=1e-11 Score=115.39 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=79.5
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHH
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELI 80 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi 80 (373)
||++.++ -++.++|||+++++.++.+..+....+.|+|+|++|+|||++.++.+|.+||+|++++++|.++...++|++
T Consensus 114 m~~~~np-l~e~~~LRp~l~p~l~~~~r~~~~~~~~PlrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elk 192 (288)
T 3dsq_A 114 LFSQVFW-LDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLE 192 (288)
T ss_dssp CTTTSCE-EETTEEECSCSHHHHHHHHHHHTTTSCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHH
T ss_pred cEEeecc-cccchhhhhcChHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHH
Confidence 3444455 345679999999999887665433346899999999999999888889999999999999987777889999
Q ss_pred HHHHHHHHHCCCCceEEE
Q psy17090 81 IMCSRLWKNLNLKNICLE 98 (373)
Q Consensus 81 ~l~~~~l~~lg~~~~~i~ 98 (373)
.++.++++.||++++.+.
T Consensus 193 g~le~ll~~LGl~~~~~~ 210 (288)
T 3dsq_A 193 DMARWVLEAAGIREFELV 210 (288)
T ss_dssp HHHHHHHHHHTCCCCEEE
T ss_pred HHHHHHHHHcCCCCcEEe
Confidence 999999999999655543
No 32
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.15 E-value=2.8e-11 Score=118.37 Aligned_cols=99 Identities=27% Similarity=0.346 Sum_probs=78.4
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcCC-CCCCeeEEEeeceeecCCCCCC-------CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQYG-------RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~-~~~p~k~~y~g~vfR~~~~~~g-------r~ref~Q~g~eiig~~~ 72 (373)
||++ .++.++|||+.|+|++++++..... .++|+|+||+|+|||+|.++.| |.|||+|.++++|+.+.
T Consensus 218 my~~----~~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe 293 (425)
T 2dq3_A 218 LYKC----ERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPD 293 (425)
T ss_dssp SCBC----TTTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGG
T ss_pred heEe----cCCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHH
Confidence 5555 3567899999999999998765332 3689999999999999986533 88999999999999875
Q ss_pred c--hhhHHHHHHHHHHHHHCCCCceE-EEe--CCCcC
Q psy17090 73 P--DIDAELIIMCSRLWKNLNLKNIC-LEL--NSIGN 104 (373)
Q Consensus 73 ~--~~d~Evi~l~~~~l~~lg~~~~~-i~i--~~~~~ 104 (373)
. ....|++.++.++|+.||++ +. +.+ ++.|.
T Consensus 294 ~s~~~~~e~i~~~~~il~~LGL~-~rvv~l~~gdlg~ 329 (425)
T 2dq3_A 294 TSYDELEKLVKDAEEVLQLLGLP-YRVVELCTGDLGF 329 (425)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTCC-EEEEECCTTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCc-eEEEEecCCcCCC
Confidence 3 23489999999999999997 65 443 44443
No 33
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.05 E-value=1.4e-10 Score=108.20 Aligned_cols=192 Identities=18% Similarity=0.156 Sum_probs=109.1
Q ss_pred CCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCC--CCCc-ceeeeEEEEEcCCCchhhHHHHHHHHH
Q psy17090 9 NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQY--GRYR-QFYQIGVEAIGFPGPDIDAELIIMCSR 85 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~--gr~r-ef~Q~g~eiig~~~~~~d~Evi~l~~~ 85 (373)
-|+.+.||..-....-+.++ . .+.|+|++|+|||+|+||. +|.+ ||+|+++|+.|.+ +.|++.++.+
T Consensus 66 ~~~~~~L~~Spe~~~~~l~~-~-----g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~----~~~l~~~~e~ 135 (294)
T 1nnh_A 66 YGVKMRLTHSMILHKQLAIA-M-----GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK----MEDIMRLIER 135 (294)
T ss_dssp TTEEEEECSCSHHHHHHHHH-T-----TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC----HHHHHHHHHH
T ss_pred CCCCEEeccChHHHHHHHhh-c-----CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC----HHHHHHHHHH
Confidence 46677887544444334332 1 2679999999999999774 6887 9999999999974 6788888888
Q ss_pred HHHHCC--CCc-eEEEeCCCcChhhHHHHHHHHHHHHHhccccccccHHHHHHhhhchhhhhcccChhHHHHHhhChhhH
Q psy17090 86 LWKNLN--LKN-ICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLL 162 (373)
Q Consensus 86 ~l~~lg--~~~-~~i~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~l~ 162 (373)
.++.+. +.+ +..+|+..+- -.+..+.+++.++ +. +. ++ . .. + ..|...
T Consensus 136 l~~~l~~~~~~~~~~~i~~~~~-~~r~~y~ea~~~~--------g~-~~--er-~--------------~~-~-~~P~~v 186 (294)
T 1nnh_A 136 LVYGLFRKAEEWTGREFPKTKR-FEVFEYSEVLEEF--------GS-DE--KA-S--------------QE-M-EEPFWI 186 (294)
T ss_dssp HHHHHHHHHHHHHSSCCCCCSS-CEEEEHHHHHHHT--------SS-HH--HH-H--------------HH-C-SSCEEE
T ss_pred HHHHHHHHHHhhhccccccCCC-ceEeEHHHHHHHh--------CC-hH--hh-h--------------hh-c-CCCEEE
Confidence 887764 110 0111221111 1112222223211 00 00 00 0 00 0 011110
Q ss_pred hhhhHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCCCccc-eEEEEEeCCC--CCc------ccee--ccCccchhHHhh
Q psy17090 163 DYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNR-TVFEWTTDKL--GSQ------NSIC--GGGRYDFLIKKF 231 (373)
Q Consensus 163 ~~~~~~~~~~l~~l~~~l~~~g~~i~~D~~~~r~~~YYtG-~vFe~~~~~~--g~~------~~ia--~GGRYD~L~~~f 231 (373)
.... ..+=-.. |+.+++++|||.+ -+||+..... ... ...+ .+++|+.++..+
T Consensus 187 ~~~P--------------~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l 250 (294)
T 1nnh_A 187 INIP--------------REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIA 250 (294)
T ss_dssp ECCC--------------CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHH
T ss_pred EcCC--------------hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 0000 0000001 7778888898886 6677743210 000 0112 378999999998
Q ss_pred c-CCCCCeeeeechHHHHHHHHHhh
Q psy17090 232 S-NKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 232 ~-~~~~pavGfai~le~l~~~l~~~ 255 (373)
+ |.+.|+.||++|+|||+.++...
T Consensus 251 ~~G~p~P~~G~glGieRL~mll~g~ 275 (294)
T 1nnh_A 251 KAGKLKPSAGAGIGVERLVRFIVGA 275 (294)
T ss_dssp HTTCCCCEEEEEEEHHHHHHHHHTC
T ss_pred hcCCCCCceEEEEcHHHHHHHHhCC
Confidence 7 66669999999999999998764
No 34
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=98.92 E-value=4.6e-09 Score=97.78 Aligned_cols=85 Identities=16% Similarity=0.257 Sum_probs=72.7
Q ss_pred ceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC
Q psy17090 11 DNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l 90 (373)
+..+|||++++++++.++.+......|.|+|++|+|||++.++.++.+||+|++++++|.+. ...|+..++.++|+.+
T Consensus 129 ~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~--~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 129 KNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGC--TRENLESIITDFLNHL 206 (290)
T ss_dssp TTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTC--CHHHHHHHHHHHHHHH
T ss_pred CCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCCh--HHHHHHHHHHHHHHHc
Confidence 46899999999999998875433467999999999999987777889999999999999764 4688999999999999
Q ss_pred CCCceEEE
Q psy17090 91 NLKNICLE 98 (373)
Q Consensus 91 g~~~~~i~ 98 (373)
|++ +.+.
T Consensus 207 Gl~-~~~~ 213 (290)
T 3qtc_A 207 GID-FKIV 213 (290)
T ss_dssp TCC-CEEE
T ss_pred CCC-cEEe
Confidence 984 6654
No 35
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=98.92 E-value=2.6e-09 Score=105.13 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=76.4
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCCCC-------CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQYG-------RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~~g-------r~ref~Q~g~eiig~~~ 72 (373)
||++. ++.++|||..|+|+++++..... +..+|+|+|++|++||+|.++.| |.|||+|..+.+|+.+.
T Consensus 239 my~~~----d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe 314 (455)
T 2dq0_A 239 IYKVE----DEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPE 314 (455)
T ss_dssp CCBBT----TSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTT
T ss_pred hCeec----CCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHH
Confidence 56663 45789999999999999876543 34689999999999999987655 88999999888888763
Q ss_pred ch--hhHHHHHHHHHHHHHCCCCceEEEeCC
Q psy17090 73 PD--IDAELIIMCSRLWKNLNLKNICLELNS 101 (373)
Q Consensus 73 ~~--~d~Evi~l~~~~l~~lg~~~~~i~i~~ 101 (373)
.. .-.|++.++.++++.||++ +.+....
T Consensus 315 ~s~~~~~e~l~~~~~il~~LGL~-yrv~~~~ 344 (455)
T 2dq0_A 315 ESWEWHEKIIRNAEELFQELEIP-YRVVNIC 344 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc-eEEEECC
Confidence 21 2247999999999999996 6665544
No 36
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=98.88 E-value=2.5e-09 Score=104.39 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=74.2
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecC-----CCCCC--CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHE-----RPQYG--RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~-----~~~~g--r~ref~Q~g~eiig~~~ 72 (373)
||++. ++.++|+|..|+++++++..... +..+|+|+|++|++||+| +|+.| |.|||+|.++..|+.++
T Consensus 212 my~~~----d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~ 287 (421)
T 1ses_A 212 VWAIA----ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEAS 287 (421)
T ss_dssp SCBBT----TSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSC
T ss_pred cEEEc----CCeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCC
Confidence 56663 35789999999999999875432 235899999999999999 67778 99999999888888762
Q ss_pred -chhh---HHHHHHHHHHHHHCCCCceEE
Q psy17090 73 -PDID---AELIIMCSRLWKNLNLKNICL 97 (373)
Q Consensus 73 -~~~d---~Evi~l~~~~l~~lg~~~~~i 97 (373)
..++ .|++.++.++|+.||++ +.+
T Consensus 288 ~e~s~~~~~e~~~~~~~il~~LGL~-~rv 315 (421)
T 1ses_A 288 LEASDRAFQELLENAEEILRLLELP-YRL 315 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC-EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCc-eEE
Confidence 2344 48999999999999997 553
No 37
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=98.68 E-value=1.3e-08 Score=101.34 Aligned_cols=84 Identities=18% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEE-eeceeecCCCC--C--CCCcceeeeEEEEEcCCCchh-h-HHHH
Q psy17090 9 NGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWY-SGPMFRHERPQ--Y--GRYRQFYQIGVEAIGFPGPDI-D-AELI 80 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y-~g~vfR~~~~~--~--gr~ref~Q~g~eiig~~~~~~-d-~Evi 80 (373)
.++.++|||+.|+++++++..... +..+|+|+|+ +|++||+| |+ . .|.|||+|.++++|+.+.... + .+++
T Consensus 315 ~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i 393 (522)
T 2cja_A 315 AEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELH 393 (522)
T ss_dssp CCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHH
Confidence 467899999999999998874322 2357999999 99999999 76 4 699999999999999664322 2 4568
Q ss_pred -HHHHHHHHHCCCC
Q psy17090 81 -IMCSRLWKNLNLK 93 (373)
Q Consensus 81 -~l~~~~l~~lg~~ 93 (373)
..+..+++.||++
T Consensus 394 ~~~~~~~l~~LGLp 407 (522)
T 2cja_A 394 DRYMHIFNDILDIE 407 (522)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHcCCC
Confidence 8888889999998
No 38
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=98.53 E-value=2.3e-07 Score=91.93 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=73.0
Q ss_pred CeEeeecC-------CCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCCCC-------CCcceeeeEE
Q psy17090 1 MYSFIDEL-------NGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQYG-------RYRQFYQIGV 65 (373)
Q Consensus 1 m~~f~D~~-------~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~~g-------r~ref~Q~g~ 65 (373)
||++.|.. .++.++|+|..++|++.++..... +..+|+|+|+++++||+|.+..| |.|||+|...
T Consensus 247 my~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~ 326 (522)
T 3vbb_A 247 LYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQ 326 (522)
T ss_dssp CCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEE
T ss_pred ceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEE
Confidence 68886640 257899999999999988764332 34689999999999999975433 7789999999
Q ss_pred EEEcCCCc-hh---hHHHHHHHHHHHHHCCCCceEEE
Q psy17090 66 EAIGFPGP-DI---DAELIIMCSRLWKNLNLKNICLE 98 (373)
Q Consensus 66 eiig~~~~-~~---d~Evi~l~~~~l~~lg~~~~~i~ 98 (373)
.+|..+.. .+ -.+++.++.++|+.||++ |.+.
T Consensus 327 ~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLp-yrvv 362 (522)
T 3vbb_A 327 FVYSSPHDNKSWEMFEEMITTAEEFYQSLGIP-YHIV 362 (522)
T ss_dssp EEEECSSTTHHHHHHHHHHHHHHHHHHHTTCC-EEEE
T ss_pred EEEeCCChHHHHHHHHHHHHHHHHHHHHcCCc-eEEE
Confidence 99987653 22 366889999999999997 5544
No 39
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=98.47 E-value=3.1e-07 Score=91.06 Aligned_cols=95 Identities=18% Similarity=0.343 Sum_probs=77.0
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCC----CCC--CCcceeeeEEEEEcCCC-
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERP----QYG--RYRQFYQIGVEAIGFPG- 72 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~----~~g--r~ref~Q~g~eiig~~~- 72 (373)
||++.|. +++.++|+|..+++++.++..... +.++|+|+|++|++||+|.. ..| |.|||.|.+..+|..+.
T Consensus 266 mf~v~~~-~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~ 344 (501)
T 1wle_A 266 IYNIDPS-RFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGL 344 (501)
T ss_dssp SCBBCTT-TSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSH
T ss_pred cEEEecC-CCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcH
Confidence 7888777 678999999999999998875433 33689999999999999854 334 67899999999999874
Q ss_pred ch---hhHHHHHHHHHHHHHCCCCceEE
Q psy17090 73 PD---IDAELIIMCSRLWKNLNLKNICL 97 (373)
Q Consensus 73 ~~---~d~Evi~l~~~~l~~lg~~~~~i 97 (373)
.. .-.+++.++.++|+.||++ |.+
T Consensus 345 e~s~~~~e~~l~~~~~il~~LgLp-yrv 371 (501)
T 1wle_A 345 EQSSELLEEFLSLQMEILTELGLH-FRV 371 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc-EEE
Confidence 22 3356889999999999997 665
No 40
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=98.28 E-value=2.8e-06 Score=83.55 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=74.3
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCC-----CC--CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQ-----YG--RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~-----~g--r~ref~Q~g~eiig~~~ 72 (373)
||++.| .++.++|+|...+|++-++..... +..+|+|+|.++++||+|... .| |.|||+|.++.+|..+.
T Consensus 254 mf~v~~--~~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe 331 (484)
T 3lss_A 254 LYQVSG--DGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPR 331 (484)
T ss_dssp CCEEES--SSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSS
T ss_pred ceEeec--CCcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcc
Confidence 788755 367899999999999988654322 346899999999999998632 23 78999999999999875
Q ss_pred c-hh---hHHHHHHHHHHHHHCCCCceEEE
Q psy17090 73 P-DI---DAELIIMCSRLWKNLNLKNICLE 98 (373)
Q Consensus 73 ~-~~---d~Evi~l~~~~l~~lg~~~~~i~ 98 (373)
. .+ -.+++..+.++|+.||++ |.+.
T Consensus 332 ~~~s~~e~e~~~~~~e~il~~LGLp-yrvv 360 (484)
T 3lss_A 332 QEESWRHLEDMITTSEEFNKSLGLP-YRVV 360 (484)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTCC-EEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCc-EEEE
Confidence 4 12 245788899999999997 5553
No 41
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=98.14 E-value=6.3e-06 Score=81.03 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=73.9
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC---CCCCCeeEEEeeceeecCCCC-----CC--CCcceeeeEEEEEcC
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL---IYDGPKRLWYSGPMFRHERPQ-----YG--RYRQFYQIGVEAIGF 70 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~---~~~~p~k~~y~g~vfR~~~~~-----~g--r~ref~Q~g~eiig~ 70 (373)
||++.|. ++.++|+|-+..|++.++..... +.++|+|+|.++++||+|... .| |.|||+|.+..+|..
T Consensus 231 mf~v~~~--~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~ 308 (485)
T 3qne_A 231 LYKVIDG--EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTE 308 (485)
T ss_dssp CCEEEET--TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEEC
T ss_pred eEEEeCC--CCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeC
Confidence 7888664 56799999999999998765332 235899999999999998643 23 778999999999986
Q ss_pred CCch--hhHHHHHHHHHHHHHCCCCceEEEe
Q psy17090 71 PGPD--IDAELIIMCSRLWKNLNLKNICLEL 99 (373)
Q Consensus 71 ~~~~--~d~Evi~l~~~~l~~lg~~~~~i~i 99 (373)
+... .-.+++.++.++++.||++ |.+..
T Consensus 309 pe~s~~e~e~ml~~~e~il~~LgLp-yrvv~ 338 (485)
T 3qne_A 309 PEKSWEEFDRMIGCSEEFYQSLGLP-YRVVG 338 (485)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCC-EEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCc-EEEEE
Confidence 6421 2256788899999999997 55443
No 42
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=98.09 E-value=1e-05 Score=80.93 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=71.8
Q ss_pred CeEeeecCCCceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCC-----CC--CCcceeeeEEEEEcCCC
Q psy17090 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQ-----YG--RYRQFYQIGVEAIGFPG 72 (373)
Q Consensus 1 m~~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~-----~g--r~ref~Q~g~eiig~~~ 72 (373)
||++. ++.++|+|...++++-++..... +..+|+|+|.+|++||+|... .| |.|||+|.+..+|..+.
T Consensus 321 mf~~~----~~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe 396 (536)
T 3err_A 321 VWAIA----ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEAS 396 (536)
T ss_dssp CCEET----TTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSC
T ss_pred ceEec----CCCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCc
Confidence 56663 35799999999999988654322 346899999999999998632 23 77999999999999876
Q ss_pred -chhh---HHHHHHHHHHHHHCCCCceEEE
Q psy17090 73 -PDID---AELIIMCSRLWKNLNLKNICLE 98 (373)
Q Consensus 73 -~~~d---~Evi~l~~~~l~~lg~~~~~i~ 98 (373)
..++ .+++..+.++++.||++ |.+.
T Consensus 397 ~e~s~~~~e~~~~~~~~i~~~LgLp-yrvv 425 (536)
T 3err_A 397 LEASDRAFQELLENAEEILRLLELP-YRLV 425 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC-EEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCc-EEEE
Confidence 2233 45788899999999997 5554
No 43
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.08 E-value=6e-06 Score=80.77 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=58.6
Q ss_pred CeEeeecCCCceEeec--CCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCc-ceeeeEEEEEcCCCchhhH
Q psy17090 1 MYSFIDELNGDNLSLR--PEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYR-QFYQIGVEAIGFPGPDIDA 77 (373)
Q Consensus 1 m~~f~D~~~G~~l~LR--pD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~r-ef~Q~g~eiig~~~~~~d~ 77 (373)
||.+ |. -|+.+.|| |+++... ++.. +.|+|++|+|||+|+++.+|.+ ||+|+++|+.+.+ ..
T Consensus 173 ~f~~-~~-~~~~~~Lr~Spel~~~~---~~~g------~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~----~~ 237 (434)
T 1x54_A 173 LFKL-KY-FDKYAYLSQSAQLYLEA---AIFG------LEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMD----LW 237 (434)
T ss_dssp CCEE-EE-TTEEEEECSCSHHHHHH---HHHH------HSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCC----HH
T ss_pred eEEE-ee-cCCcEEeccChHHHHHH---HhcC------ccceEEEecceecCCCCCcccccEEEEeeEEEcCCC----HH
Confidence 4655 56 78889999 7777543 2321 5699999999999998888877 9999999999974 57
Q ss_pred HHHHHHHHHHHHC
Q psy17090 78 ELIIMCSRLWKNL 90 (373)
Q Consensus 78 Evi~l~~~~l~~l 90 (373)
|++.++.+.++.+
T Consensus 238 dlm~~~e~ll~~l 250 (434)
T 1x54_A 238 DIMKVEEELVSYM 250 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888777776655
No 44
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.05 E-value=9.5e-06 Score=80.13 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=70.0
Q ss_pred ceEeecCCChHHHHHHHHHhcC-CCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHH
Q psy17090 11 DNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKN 89 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~-~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~ 89 (373)
+..+||+.+|+..+|.+..+.. ....|+|+|++|+|||++.+...+..+|+|++.-++|.. ..-.++..++..+++.
T Consensus 320 ~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~--v~f~dLKg~Le~~l~~ 397 (508)
T 3l4g_A 320 RKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHG--LTLGHLMGVLREFFTK 397 (508)
T ss_dssp TBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEES--CCHHHHHHHHHHHHHT
T ss_pred ccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCC--CCHHHHHHHHHHHHHH
Confidence 5789999999999999886543 235799999999999998777778889999999888743 2347788888889999
Q ss_pred CCCCceEEEe
Q psy17090 90 LNLKNICLEL 99 (373)
Q Consensus 90 lg~~~~~i~i 99 (373)
+|+..+.++-
T Consensus 398 lG~~~~rfrp 407 (508)
T 3l4g_A 398 LGITQLRFKP 407 (508)
T ss_dssp TTCCCCEEEE
T ss_pred cCCcceEeec
Confidence 9875555543
No 45
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.90 E-value=3.6e-05 Score=76.41 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=66.4
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCC-CCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERP-QYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~-~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l 90 (373)
..+||+.+++++...+..+......|+|+|++|+|||++.+ +.++++||+|+++.+.|.... -.++..++..+++.|
T Consensus 180 ~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vd--f~dLKgilE~LL~~L 257 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELS--VDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCC--HHHHHHHHHHHHGGG
T ss_pred ccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence 57999999997777766543333579999999999998765 566789999999999997432 367888888889888
Q ss_pred CCCceEEE
Q psy17090 91 NLKNICLE 98 (373)
Q Consensus 91 g~~~~~i~ 98 (373)
|+.++.++
T Consensus 258 Gi~~~r~~ 265 (534)
T 2du3_A 258 GFENFRFR 265 (534)
T ss_dssp TCCEEEEE
T ss_pred CCCeEEEE
Confidence 87545443
No 46
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=97.82 E-value=5.7e-05 Score=73.69 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=56.5
Q ss_pred CeEeeecCCCceEeec--CCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCc-ceeeeEEEEEcCCCchhhH
Q psy17090 1 MYSFIDELNGDNLSLR--PEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYR-QFYQIGVEAIGFPGPDIDA 77 (373)
Q Consensus 1 m~~f~D~~~G~~l~LR--pD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~r-ef~Q~g~eiig~~~~~~d~ 77 (373)
||.+ +. -|+.+.|| |+++ .-| ++.. +-|+|++|+|||+|+++.+|.+ ||+|+++|..+.+ ..
T Consensus 172 ~f~~-~~-~~~~~~L~~Spql~--~~~-~~~g------~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~----~~ 236 (429)
T 1wyd_A 172 LFPV-IY-FGKEAFLAQSPQLY--KEL-MAGV------VERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFAD----YN 236 (429)
T ss_dssp CCEE-EE-TTEEEEECSCCHHH--HHH-HHHH------HSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCC----HH
T ss_pred eEEE-ec-CCceEEecCCcHHH--HHH-HHhC------cCceEEEcccccccCCccccccceeeEeeeeecCCC----HH
Confidence 4665 56 68889999 6665 344 4432 4599999999999998877777 9999999999974 46
Q ss_pred HHHHHHHHHHHHC
Q psy17090 78 ELIIMCSRLWKNL 90 (373)
Q Consensus 78 Evi~l~~~~l~~l 90 (373)
|++.++-+.++.+
T Consensus 237 dlm~~~e~ll~~l 249 (429)
T 1wyd_A 237 DVMQLLEKILHNI 249 (429)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6766666665544
No 47
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=97.80 E-value=1.2e-05 Score=78.21 Aligned_cols=76 Identities=16% Similarity=0.265 Sum_probs=35.5
Q ss_pred CeEeeecCCCceEeec--CCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCc-ceeeeEEEEEcCCCchhhH
Q psy17090 1 MYSFIDELNGDNLSLR--PEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYR-QFYQIGVEAIGFPGPDIDA 77 (373)
Q Consensus 1 m~~f~D~~~G~~l~LR--pD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~r-ef~Q~g~eiig~~~~~~d~ 77 (373)
||.+ |. -|+.+.|| |+++. +.++ +. .-|+|++|+|||+|+++.+|.+ ||+|+++|..+.++ ..
T Consensus 163 ~f~~-~~-~g~~~~L~~Spel~~---~~l~-~g-----~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d---~~ 228 (422)
T 1n9w_A 163 LFGV-DY-FEKRAYLAQSPQLYK---QIMV-GV-----FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIAD---EE 228 (422)
T ss_dssp ------------------CHHHH---HHHH-HH-----HSEEEEEEEC-------------CCEEEEEEEESCSS---HH
T ss_pred eEEE-ee-CCCcEEeeeCHHHHH---HHHh-hC-----CCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCC---HH
Confidence 3555 45 67788999 77664 3333 22 3499999999999998888877 99999999999744 36
Q ss_pred HHHHHHHHHHHHC
Q psy17090 78 ELIIMCSRLWKNL 90 (373)
Q Consensus 78 Evi~l~~~~l~~l 90 (373)
|++.++-+.++.+
T Consensus 229 dlm~l~e~ll~~l 241 (422)
T 1n9w_A 229 DLMRLEEALLAEM 241 (422)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 48
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=97.80 E-value=0.00014 Score=68.10 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=71.2
Q ss_pred CceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCC-CCCCcceeeeEEEEEcCCCch--hhHHHHHHHHHH
Q psy17090 10 GDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQ-YGRYRQFYQIGVEAIGFPGPD--IDAELIIMCSRL 86 (373)
Q Consensus 10 G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~-~gr~ref~Q~g~eiig~~~~~--~d~Evi~l~~~~ 86 (373)
+..++|.|..++|+.-++.........|+|+..+|+|||+|.+. .-|.+||+|..+.+|+.+... .-.+++..+.++
T Consensus 141 ~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~i 220 (346)
T 3mf2_A 141 PADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAI 220 (346)
T ss_dssp EEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 35799999999999998874312225699999999999998742 248899999999999975432 224578999999
Q ss_pred HHHCCCCceEEEe-CCCc
Q psy17090 87 WKNLNLKNICLEL-NSIG 103 (373)
Q Consensus 87 l~~lg~~~~~i~i-~~~~ 103 (373)
++.||++ |.+.+ ++.+
T Consensus 221 l~~LgLp-yrv~~~~D~~ 237 (346)
T 3mf2_A 221 ARDLGLT-FRVDYASDPF 237 (346)
T ss_dssp HHHTTCC-CEEEECCCCC
T ss_pred HHHCCCC-EEEEEccCCC
Confidence 9999996 66654 4433
No 49
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=97.58 E-value=0.00022 Score=70.68 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=51.9
Q ss_pred CeEeeecCCCceEeec--CCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCc-ceeeeEEEE-EcCCCchhh
Q psy17090 1 MYSFIDELNGDNLSLR--PEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYR-QFYQIGVEA-IGFPGPDID 76 (373)
Q Consensus 1 m~~f~D~~~G~~l~LR--pD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~r-ef~Q~g~ei-ig~~~~~~d 76 (373)
||.+ +. -|+.+.|| |++-. -+.++. .+-|+|++|++||+|+++.+|.+ ||||+++|+ +|.+.
T Consensus 216 ~f~~-~~-~~~~~~L~~Spql~~--k~l~~~------g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~---- 281 (487)
T 1eov_A 216 VFEV-TY-FKGKAYLAQSPQFNK--QQLIVA------DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHY---- 281 (487)
T ss_dssp CCEE-EE-TTEEEEECSCTHHHH--HHHHHT------TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCT----
T ss_pred ccee-cc-CCccEEcccChHHHH--HHHHhc------CCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCH----
Confidence 4555 45 68889999 77644 333342 24599999999999998878887 999999998 77543
Q ss_pred HHHHHHHHHHHH
Q psy17090 77 AELIIMCSRLWK 88 (373)
Q Consensus 77 ~Evi~l~~~~l~ 88 (373)
.|++.++-+.++
T Consensus 282 ~dlm~l~E~ll~ 293 (487)
T 1eov_A 282 HEVLDTLSELFV 293 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 50
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.05 E-value=0.0022 Score=63.71 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=60.5
Q ss_pred ceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCC-CCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHH
Q psy17090 11 DNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERP-QYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKN 89 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~-~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~ 89 (373)
+.-+||+.+++++...+..+......|+|+|++|+|||.+.+ ...+++||+|++.-++|... .-.++..++..+++.
T Consensus 191 e~svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~v--dF~DLKG~Le~ll~~ 268 (549)
T 2du7_A 191 TTLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDV--SVDDGKVVAEGLLAQ 268 (549)
T ss_dssp EEEECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTC--CHHHHHHHHHHHHGG
T ss_pred cccccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCC--CHHHHHHHHHHHHHH
Confidence 467999999997777665543334679999999999997543 33467899999999999732 346677777778887
Q ss_pred CCC
Q psy17090 90 LNL 92 (373)
Q Consensus 90 lg~ 92 (373)
||+
T Consensus 269 LGi 271 (549)
T 2du7_A 269 FGF 271 (549)
T ss_dssp GTC
T ss_pred cCC
Confidence 776
No 51
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=97.03 E-value=0.0025 Score=63.18 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=53.0
Q ss_pred CeEee-ecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHH
Q psy17090 1 MYSFI-DELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAEL 79 (373)
Q Consensus 1 m~~f~-D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Ev 79 (373)
+|.+. |. -|+.+.||----...=|.++. ..-|+|++|++||+|.++..|..||||+++|..+.+ ..++
T Consensus 212 ~F~~~~~~-~~~~~yLr~SpqLylk~l~v~------G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d----~~dl 280 (493)
T 3a74_A 212 PFITHHNA-LDMTLYMRIAIELHLKRLIVG------GLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYAD----FRDI 280 (493)
T ss_dssp CCEEEETT-TTEEEEECSCSHHHHHHHHHT------TCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCC----HHHH
T ss_pred ceEecccC-CCceeEEecCHHHHHHHHhhc------ccCceEEECccccCCCCCcccCCceeEEEEEecCCC----HHHH
Confidence 35554 56 778889993222222233332 245999999999999888888899999999999965 3455
Q ss_pred HHHHHHHHHH
Q psy17090 80 IIMCSRLWKN 89 (373)
Q Consensus 80 i~l~~~~l~~ 89 (373)
+.++-+.++.
T Consensus 281 m~l~E~ll~~ 290 (493)
T 3a74_A 281 MKLTENLIAH 290 (493)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 52
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=96.52 E-value=0.018 Score=54.37 Aligned_cols=76 Identities=22% Similarity=0.206 Sum_probs=58.2
Q ss_pred ceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC
Q psy17090 11 DNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l 90 (373)
...+||+-+++..+|.++.+ ..|+|+|++|+|||++....-+..||+|+..-++|.... -.++..++..+++.+
T Consensus 171 ~~~vLRt~tsp~llr~l~~~----~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~--f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 171 GRLLLRTHTSPMQVRYMVAH----TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIA--MAHLKGAIYELAQAL 244 (350)
T ss_dssp SCEEECSSSTHHHHHHHHHC----CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCC--HHHHHHHHHHHHHHH
T ss_pred ccceeeccchHHHHHHHHhc----CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCC--HHHHHHHHHHHHHhh
Confidence 66789999999999998763 359999999999997542233567999999999997422 245566667777776
Q ss_pred -CC
Q psy17090 91 -NL 92 (373)
Q Consensus 91 -g~ 92 (373)
|.
T Consensus 245 fG~ 247 (350)
T 1b7y_A 245 FGP 247 (350)
T ss_dssp SCS
T ss_pred cCC
Confidence 75
No 53
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.44 E-value=0.019 Score=57.66 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=60.7
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCC-CCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERP-QYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~-~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l 90 (373)
.-+||+-+++++...+..+......|+|+|.+|.|||.+.. ...++.||.|.+.=+.|.... -.++..++..+++.+
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vd--F~DLKGvLE~LL~~L 276 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVD--INDGKAIAEGLLSQF 276 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCC--HHHHHHHHHHHHHTT
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence 56899999997766665553334579999999999996543 223568999999999997321 255666777777778
Q ss_pred CCCceEEE
Q psy17090 91 NLKNICLE 98 (373)
Q Consensus 91 g~~~~~i~ 98 (373)
|+..+.++
T Consensus 277 Gi~~vrfr 284 (648)
T 2odr_B 277 GFTNFKFI 284 (648)
T ss_dssp TCCCEEEE
T ss_pred CCCeEEEE
Confidence 87444444
No 54
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=96.43 E-value=0.014 Score=57.87 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=48.1
Q ss_pred ecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHH
Q psy17090 6 DELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSR 85 (373)
Q Consensus 6 D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~ 85 (373)
+. -|+.+.||----...=|.++.. .-|+|++|++||+|.+...|..||||+++|..+.+ ..+++.++-+
T Consensus 227 ~~-~~~~~yL~~SpqLylk~L~v~G------~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d----~~dlm~l~E~ 295 (504)
T 1e1o_A 227 NA-LDLDMYLRIAPELYLKRLVVGG------FERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD----YHDLIELTES 295 (504)
T ss_dssp TT-TTEEEEECSCSHHHHHHHHHHT------CCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCC----HHHHHHHHHH
T ss_pred CC-CCceEEeccCHHHHHHHHhhcC------CCcEEEEcccccCCCCCccccCceeeeeeeecCCC----HHHHHHHHHH
Confidence 44 5777888833233333434432 34999999999999887778899999999999864 2445555444
Q ss_pred HHH
Q psy17090 86 LWK 88 (373)
Q Consensus 86 ~l~ 88 (373)
.++
T Consensus 296 li~ 298 (504)
T 1e1o_A 296 LFR 298 (504)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 55
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.42 E-value=0.019 Score=57.67 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=60.7
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCC-CCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERP-QYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~-~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l 90 (373)
.-+||+-+++++...+..+......|+|+|.+|.|||.+.. ...++.||.|.+.=+.|.... -.++..++..+++.+
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vd--F~DLKGvLE~LL~~L 276 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVD--INDGKAIAEGLLSQF 276 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCC--HHHHHHHHHHHHHTT
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence 56899999997766665553334579999999999996543 223568999999999997321 255666777777778
Q ss_pred CCCceEEE
Q psy17090 91 NLKNICLE 98 (373)
Q Consensus 91 g~~~~~i~ 98 (373)
|+..+.++
T Consensus 277 Gi~~vrfr 284 (665)
T 2odr_A 277 GFTNFKFI 284 (665)
T ss_dssp TCCCEEEE
T ss_pred CCCeEEEE
Confidence 87444444
No 56
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.42 E-value=0.02 Score=57.74 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=60.9
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCC-CCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERP-QYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~-~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l 90 (373)
.-+||+-+++++...+..+......|+|+|.+|.|||.+.. ...++.||.|.+.=+.|.... -.++..++..+++.|
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vD--F~DLKGvLE~LL~~L 276 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVD--INDGKAIAEGLLSQF 276 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCC--HHHHHHHHHHHHHTT
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence 56899999997766665553334579999999999996543 223568999999999997321 255666777777778
Q ss_pred CCCceEEE
Q psy17090 91 NLKNICLE 98 (373)
Q Consensus 91 g~~~~~i~ 98 (373)
|+..+.++
T Consensus 277 Gi~~vrfr 284 (685)
T 2odr_D 277 GFTNFKFI 284 (685)
T ss_dssp TCCCEEEE
T ss_pred CCCeEEEE
Confidence 87445444
No 57
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.34 E-value=0.026 Score=57.07 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=60.9
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCC-CCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERP-QYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~-~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l 90 (373)
.-+||+-+++++...+..+......|+|+|.+|.|||.+.. ...++.||.|.+.=+.|.... -.++..++..+++.+
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vD--F~DLKGvLE~LL~~L 276 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVD--INDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCC--HHHHHHHHHHHHHTT
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence 56899999997776665553334579999999999996543 223568999999999997321 255666777777778
Q ss_pred CCCceEEE
Q psy17090 91 NLKNICLE 98 (373)
Q Consensus 91 g~~~~~i~ 98 (373)
|+..+.++
T Consensus 277 Gi~~vrfr 284 (701)
T 2odr_C 277 GFTNFKFI 284 (701)
T ss_dssp TCCCEEEE
T ss_pred CCCeEEEE
Confidence 87445444
No 58
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=96.07 E-value=0.025 Score=52.12 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=55.1
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC-
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL- 90 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l- 90 (373)
..+||+-+++...|.++.|. ...|.|+|.+|+|||++.....+..||+|+++-+.|.... -.++..++..+++.+
T Consensus 109 ~~vLRtsl~p~ll~~l~~N~--~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~d--f~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 109 EILMRTHTSPVQARTMEKRN--GQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIK--MSDLKGTLELVAKKLF 184 (294)
T ss_dssp SEEECSSSHHHHHHHHHHTT--TCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred cceeeccCHHHHHHHHHhcC--CCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCC--HHHHHHHHHHHHHHHh
Confidence 46899999999999988764 3579999999999996432222446999999999995321 134445555556665
Q ss_pred CC
Q psy17090 91 NL 92 (373)
Q Consensus 91 g~ 92 (373)
|+
T Consensus 185 g~ 186 (294)
T 2rhq_A 185 GA 186 (294)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 59
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=95.54 E-value=0.016 Score=54.61 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=47.2
Q ss_pred ceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHHC
Q psy17090 11 DNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90 (373)
Q Consensus 11 ~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~l 90 (373)
..+-|+----...-|.++.. . -|+|++|++||+|.....+..||||+++|.-+.+ ..+++.++-+.++.+
T Consensus 89 ~~~yL~~Spql~~k~l~~~g-~-----~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d----~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 89 MNLWLMTSPEYHMKRLLVAG-C-----GPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYD----MYRLMNEVDDLLQQV 158 (345)
T ss_dssp EEEEECSCSHHHHHHHHHTT-C-----CSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred CCEeecCCHHHHHHHHHHcC-C-----CcEEEEEcceeCCCCcccccchhheeeeeeeCCC----HHHHHHHHHHHHHHH
Confidence 34456643333344555532 2 2999999999999887778889999999999964 245555555555543
No 60
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=95.30 E-value=0.022 Score=55.56 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=38.3
Q ss_pred CCceEeec--CCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCc-ceeeeEEEEEcCC
Q psy17090 9 NGDNLSLR--PEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYR-QFYQIGVEAIGFP 71 (373)
Q Consensus 9 ~G~~l~LR--pD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~r-ef~Q~g~eiig~~ 71 (373)
-|+.+.|+ |.+-.+ +.++ . .-|+|++|++||+|.+...|.. ||||+++|.-+.+
T Consensus 176 ~g~~~~L~~SpqLylq--~l~~-g------~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d 232 (435)
T 2xgt_A 176 FGEQSFLTQSSQLYLE--TCIP-T------LGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFIT 232 (435)
T ss_dssp TTEEEEECSCSHHHHH--HHHH-H------HCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCC
T ss_pred CCcccccCCChHHHHH--Hhhh-c------cCceEEEecceecCCCCccccccceeEEEEEEecCC
Confidence 45667777 444333 3333 1 2289999999999987655555 9999999999865
No 61
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=95.24 E-value=0.14 Score=44.73 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=66.9
Q ss_pred eeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCC------CCCCcceeeeEEEEEcCC------
Q psy17090 4 FIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQ------YGRYRQFYQIGVEAIGFP------ 71 (373)
Q Consensus 4 f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~------~gr~ref~Q~g~eiig~~------ 71 (373)
+.++++-..=+||+-+.+++.+.++.|......++|+|.+|.||+.+... .+.++|....++=+.|..
T Consensus 50 l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~ 129 (213)
T 3ica_A 50 LMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWA 129 (213)
T ss_dssp CSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC----
T ss_pred ecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCC
Confidence 44555666789999999999999887654334569999999999964311 123478888998888852
Q ss_pred --Cchhh-HHHHHHHHHHHHHCCCC--ceEEEe
Q psy17090 72 --GPDID-AELIIMCSRLWKNLNLK--NICLEL 99 (373)
Q Consensus 72 --~~~~d-~Evi~l~~~~l~~lg~~--~~~i~i 99 (373)
+...| .++-.++-.++..+|++ ++.++-
T Consensus 130 ~~~~~~df~d~Kg~ve~ll~~lgi~~~~~~~~~ 162 (213)
T 3ica_A 130 HPEEPTSVFELKAVVEQVLCRVGIETGAYTLKT 162 (213)
T ss_dssp -CCCBCCHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred CCCCCcCHHHHHHHHHHHHHHhCCCccceEEee
Confidence 12345 44556667778889986 466543
No 62
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=95.09 E-value=0.063 Score=52.23 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=40.6
Q ss_pred CCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCC-cceeeeEEEEEcCCC
Q psy17090 9 NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRY-RQFYQIGVEAIGFPG 72 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~-ref~Q~g~eiig~~~ 72 (373)
-|+.+.|+.---...-+.++. ..-|+|++|++||+|.....|. -||||+++|.-+.++
T Consensus 181 ~~~~~yL~~Spql~~q~l~~~------g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~ 239 (438)
T 3nem_A 181 FEEDAFLAQSPQLYKQIMMAS------GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIED 239 (438)
T ss_dssp TTEEEEECSCSHHHHHHGGGT------TCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSS
T ss_pred CCccEEEecChHHHHHHHHhc------CCCceEEEcceEECCCCCCcccccceeeeeeeeccCcc
Confidence 355677775444443344332 1349999999999998765554 599999999998774
No 63
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=94.95 E-value=0.11 Score=45.33 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=61.7
Q ss_pred eeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCC------CCCCcceeeeEEEEEcCC------
Q psy17090 4 FIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQ------YGRYRQFYQIGVEAIGFP------ 71 (373)
Q Consensus 4 f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~------~gr~ref~Q~g~eiig~~------ 71 (373)
+.++++-..=+||+-+.+++.+.++.|......++|+|.+|.||+.+... .+.++|....++=+.|..
T Consensus 50 l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~ 129 (213)
T 3ig2_A 50 LLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWA 129 (213)
T ss_dssp BSSGGGCSCCEECSCSHHHHHHHHHHC------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC-
T ss_pred EeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCC
Confidence 33444555678999999999999886644334578999999999964311 123578888998888842
Q ss_pred --CchhhH-HHHHHHHHHHHHCCCC--ceEEEe
Q psy17090 72 --GPDIDA-ELIIMCSRLWKNLNLK--NICLEL 99 (373)
Q Consensus 72 --~~~~d~-Evi~l~~~~l~~lg~~--~~~i~i 99 (373)
+...|. ++-.++-.++..+|++ ++.++-
T Consensus 130 ~~~~~~df~dlKg~ve~ll~~lg~~~~~~~~~~ 162 (213)
T 3ig2_A 130 HADENTSVYELKAYVENIFKRLGLDLHSLVVGN 162 (213)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTBCGGGCEEEE
T ss_pred CCCCCcCHHHHHHHHHHHHHHhCCCccceEEee
Confidence 123454 4556666778889986 465543
No 64
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=94.26 E-value=0.21 Score=50.45 Aligned_cols=85 Identities=8% Similarity=0.067 Sum_probs=60.8
Q ss_pred eecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHH-HHHH
Q psy17090 5 IDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAEL-IIMC 83 (373)
Q Consensus 5 ~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Ev-i~l~ 83 (373)
.++++-..-+||+-+.+++.+.++.|.. +..|+|+|.+|.|||.+....-..+|+.|.++=+.|... +.+. -.++
T Consensus 440 ~NPis~e~svmRtsLlpgLL~~l~~N~~-~~~~vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~---~f~~lkg~l 515 (589)
T 3l4g_B 440 SNPKTAEFQVARTTLLPGLLKTIAANRK-MPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNP---GFEIIHGLL 515 (589)
T ss_dssp SSCSSGGGSEECSCSHHHHHHHHHHTTT-SCSCEEEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSC---CHHHHHHHH
T ss_pred cCCCchhHhHHHHHHHHHHHHHHHHHhc-CCCceEEEEeeeEEecCCccccCCccccEEEEEEECCCC---CHHHHHHHH
Confidence 3343445568999999999999886643 346999999999999754322346789999998888542 3443 3455
Q ss_pred HHHHHHCCCC
Q psy17090 84 SRLWKNLNLK 93 (373)
Q Consensus 84 ~~~l~~lg~~ 93 (373)
..+++.+|++
T Consensus 516 e~ll~~lg~~ 525 (589)
T 3l4g_B 516 DRIMQLLDVP 525 (589)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 5678888885
No 65
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=93.69 E-value=0.23 Score=52.08 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=62.4
Q ss_pred EeeecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCC--------ch
Q psy17090 3 SFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPG--------PD 74 (373)
Q Consensus 3 ~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~--------~~ 74 (373)
++.++++...-+||+-+.++..+.++.|...+..|+|+|.+|.|||.+.....+ .|+.|.++=+.|... ..
T Consensus 537 ~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~ 615 (795)
T 2rhq_B 537 SLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEE 615 (795)
T ss_dssp ECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEE
T ss_pred EEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCC
Confidence 344454555668999999999999887644345799999999999953221123 799999998988631 11
Q ss_pred hh-HHHHHHHHHHHHHCCCC
Q psy17090 75 ID-AELIIMCSRLWKNLNLK 93 (373)
Q Consensus 75 ~d-~Evi~l~~~~l~~lg~~ 93 (373)
.| .++-.++..+++.+|++
T Consensus 616 ~dF~dlKg~le~ll~~lG~~ 635 (795)
T 2rhq_B 616 IDFFIAKGVVDRVAEKLNLE 635 (795)
T ss_dssp CCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHcCCc
Confidence 34 34455666667777765
No 66
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=92.26 E-value=0.48 Score=47.76 Aligned_cols=57 Identities=21% Similarity=0.165 Sum_probs=38.0
Q ss_pred CCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 9 NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
.|..++|+----...=+.++. . --|+|++|++||+|....-|.=||||+++|.-..+
T Consensus 184 ~~~~y~L~qSPQl~kq~Lmv~-G-----~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d 240 (585)
T 1c0a_A 184 KGKFYALPQSPQLFKQLLMMS-G-----FDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT 240 (585)
T ss_dssp TTCEEECCSCSHHHHHHHHHT-T-----CCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCC
T ss_pred CCceEeCccCHHHHHHHHHhc-C-----CCceEEEeceeecCCCCCCcCcccceeeeeecCCC
Confidence 456666773222222233332 2 23999999999998776555449999999999875
No 67
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=92.10 E-value=0.21 Score=50.29 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=37.8
Q ss_pred CCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 9 NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
.|..++|+----...=+.++. . --|+|++|++||+|.....|.=||||+++|.-..+
T Consensus 190 ~~~~y~L~qSPQl~kq~Lmv~-G-----~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d 246 (580)
T 1l0w_A 190 PGLFYALPQSPQLFKQMLMVA-G-----LDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVE 246 (580)
T ss_dssp TTEEEECCSCSHHHHHHHHHT-T-----CSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCC
T ss_pred CCceeECccCHHHHHHHHHHh-c-----cCCeEEEeceeeCCCCCCCcCCCccceeeeecCCC
Confidence 355666774222222233332 2 23999999999998776555449999999999865
No 68
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=91.90 E-value=0.22 Score=48.67 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=37.9
Q ss_pred CceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCC-CcceeeeEEEEEcCC
Q psy17090 10 GDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGR-YRQFYQIGVEAIGFP 71 (373)
Q Consensus 10 G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr-~ref~Q~g~eiig~~ 71 (373)
|+.+.|+---....=+.++. --|+|++|++||+|.....| .-||||+++|.-+.+
T Consensus 201 ~~~~~L~~SpqL~lq~l~~g-------~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d 256 (456)
T 3m4p_A 201 NEPAYLTQSSQLYLESVIAS-------LGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFIS 256 (456)
T ss_dssp TEEEEECSCCHHHHHTTHHH-------HSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCC
T ss_pred CCCcccccCHHHHHHHHHhc-------cCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCC
Confidence 45556665544444344432 12899999999998765444 459999999999875
No 69
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=91.76 E-value=0.25 Score=46.05 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=41.7
Q ss_pred eEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcC
Q psy17090 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 70 (373)
Q Consensus 12 ~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~ 70 (373)
..+||..+++..+|.+..+ ..|+|+|.+|+|||.+ ....+.-+|+|...=++|.
T Consensus 163 ~~vLRThtsp~~lr~l~~~----~~pirifeiGrVyR~d-~d~th~p~fhqlegl~v~~ 216 (327)
T 3pco_A 163 TRLLRTQTSGVQIRTMKAQ----QPPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDT 216 (327)
T ss_dssp SCEECSCTHHHHHHHHTTC----CSSCCBCCEECCBCSC-CBTTBCSBCCEEEEEEEET
T ss_pred CceecccCCHHHHHHHHhC----CCCeeEEeeccEEecC-CCcccCCcccEEEEEEECC
Confidence 3589999999999987643 3699999999999976 3344556899987666653
No 70
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=91.58 E-value=0.26 Score=49.78 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=35.1
Q ss_pred eEEEeeceeecCCCCCCCCcceeeeEEEEEcCCCchhhHHHHHHHHHHHHH
Q psy17090 39 RLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKN 89 (373)
Q Consensus 39 k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~~~~d~Evi~l~~~~l~~ 89 (373)
|+|++|++||.|.....|.-||||+++|.-..+- -+++.++-+.+..
T Consensus 218 rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~----~d~m~~~E~l~~~ 264 (617)
T 4ah6_A 218 RYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQ----TGIQSLIEGLLQY 264 (617)
T ss_dssp EEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCH----HHHHHHHHHHHHH
T ss_pred cEEEEEhheecccCCCCcCcceecceeeecCCCH----HHHHHHHHHHHHH
Confidence 9999999999987766677899999999988642 3344444444443
No 71
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=91.29 E-value=0.52 Score=49.20 Aligned_cols=87 Identities=21% Similarity=0.168 Sum_probs=62.0
Q ss_pred EeeecCCCceEeecCCChHHHHHHHHHhcCCC-CCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCC-------ch
Q psy17090 3 SFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPG-------PD 74 (373)
Q Consensus 3 ~f~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~-~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~-------~~ 74 (373)
++.++++...-+||+.+.++..+.++.|.... ..|+|+|.+|.||| + .|+.|.++=+.|... ..
T Consensus 532 ~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~ 603 (785)
T 1b7y_B 532 LLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERL 603 (785)
T ss_dssp EESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCB
T ss_pred EEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCC
Confidence 34445455666899999999999988764333 47999999999999 2 799999999999641 11
Q ss_pred hh-HHHHHHHHHHHHHCCCCceEEE
Q psy17090 75 ID-AELIIMCSRLWKNLNLKNICLE 98 (373)
Q Consensus 75 ~d-~Evi~l~~~~l~~lg~~~~~i~ 98 (373)
.| .++-..+..+++.+|+ .+.++
T Consensus 604 vdf~dlKg~le~ll~~lgi-~~~~~ 627 (785)
T 1b7y_B 604 SGYFLLKGYLEALFARLGL-AFRVE 627 (785)
T ss_dssp CSHHHHHHHHHHHHHHHTC-CCEEE
T ss_pred cCHHHHHHHHHHHHHHcCC-ceEEe
Confidence 34 3455566666777787 34443
No 72
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=89.95 E-value=0.46 Score=47.19 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=37.9
Q ss_pred CceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 10 GDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 10 G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
|..+.||----...=|.++.. --|+|++|++||+|....-+.-||||+.+|.-..+
T Consensus 251 ~~~~yL~~SpqLylk~L~v~G------~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d 306 (529)
T 4ex5_A 251 DMEMFLRIAPELYLKRLIVGG------FERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTD 306 (529)
T ss_dssp TEEEEECSCSHHHHHHHHHTT------CSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCC
T ss_pred CcceecccCHHHHHHHHHhcC------CCcEEEeehheecCCCCCCcccHhHhhhhhhhcCC
Confidence 344555533323333444432 33999999999998766556679999999998764
No 73
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=89.79 E-value=1.2 Score=44.27 Aligned_cols=57 Identities=18% Similarity=0.071 Sum_probs=39.9
Q ss_pred CCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCC
Q psy17090 9 NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFP 71 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~ 71 (373)
-|..+.||----...=|.++. . --|+|++|++||+|....-+.-||||+.+|.-..+
T Consensus 222 ~~~~~yL~~SpqL~lk~liv~-g-----~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d 278 (521)
T 3bju_A 222 LDMNLYMRIAPELYHKMLVVG-G-----IDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYAD 278 (521)
T ss_dssp TTEEEEECSCSHHHHHHHHHT-T-----CCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCC
T ss_pred CCcceEeeCCHHHHHHHHHhc-C-----cCceEEEEcceeCCCCCCccchhhhhhhhhhhcCC
Confidence 355677774433333344442 2 23999999999998766556679999999998864
No 74
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=86.29 E-value=1.2 Score=44.32 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=26.5
Q ss_pred CeeEEEeeceeecCCCCCC-CCcceeeeEEEE-EcC
Q psy17090 37 PKRLWYSGPMFRHERPQYG-RYRQFYQIGVEA-IGF 70 (373)
Q Consensus 37 p~k~~y~g~vfR~~~~~~g-r~ref~Q~g~ei-ig~ 70 (373)
--|+|++|++||.|..... +.-||||+++|. ++.
T Consensus 310 ~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~ 345 (548)
T 3i7f_A 310 FRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVE 345 (548)
T ss_dssp CCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSS
T ss_pred cCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhc
Confidence 3499999999999875433 346999999997 553
No 75
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=86.02 E-value=2.1 Score=44.70 Aligned_cols=88 Identities=13% Similarity=-0.014 Sum_probs=62.0
Q ss_pred eecCCCceEeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeEEEEEcCCC--------chhh
Q psy17090 5 IDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPG--------PDID 76 (373)
Q Consensus 5 ~D~~~G~~l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g~eiig~~~--------~~~d 76 (373)
.++++-+.=+||+-+.+++...++.|......++|+|.+|.||.........++|....++=+.|... ...|
T Consensus 534 ~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~d 613 (795)
T 3pco_B 534 PSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVD 613 (795)
T ss_dssp SSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCC
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeeeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCC
Confidence 34445556689999999999998876654456899999999998644322356788889988888531 2245
Q ss_pred HHHH-HHHHHHHHHCCC
Q psy17090 77 AELI-IMCSRLWKNLNL 92 (373)
Q Consensus 77 ~Evi-~l~~~~l~~lg~ 92 (373)
..-+ ..+..+|..+|+
T Consensus 614 F~dlKg~ve~ll~~lg~ 630 (795)
T 3pco_B 614 FYDLKGDLESVLDLTGK 630 (795)
T ss_dssp HHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 4444 555566777886
No 76
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=78.70 E-value=2.1 Score=41.38 Aligned_cols=50 Identities=26% Similarity=0.571 Sum_probs=34.6
Q ss_pred ceEEEEEeCCCCCccceecc---------------------CccchhHHhhcCCCCCeeeeechHHHHHHHHHhh
Q psy17090 202 RTVFEWTTDKLGSQNSICGG---------------------GRYDFLIKKFSNKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 202 G~vFe~~~~~~g~~~~ia~G---------------------GRYD~L~~~f~~~~~pavGfai~le~l~~~l~~~ 255 (373)
.--|++|.++ ..|++| ..|+.++..+.--..|+.||++|+|||+.++...
T Consensus 341 ~~~fDl~~~G----~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~ 411 (429)
T 1wyd_A 341 SESFDLIYKF----LEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGI 411 (429)
T ss_dssp BSEEEEEETT----EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCC
T ss_pred EEEEEEEECC----EEEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCC
Confidence 3458888874 256655 3566666655311348999999999999999764
No 77
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=77.79 E-value=20 Score=29.78 Aligned_cols=61 Identities=8% Similarity=-0.127 Sum_probs=47.4
Q ss_pred CCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHH---cCCCEEEEE
Q psy17090 263 HQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANA---SNANFAAII 325 (373)
Q Consensus 263 ~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~---~gi~~~viv 325 (373)
..+.|.|+.-+.+++..+.+.+..|...|+..++...+ .++.+++..++++. .|++-+|.+
T Consensus 11 ~~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~s--aHR~p~~l~~~~~~a~~~g~~ViIa~ 74 (173)
T 4grd_A 11 SAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVS--AHRMPDEMFDYAEKARERGLRAIIAG 74 (173)
T ss_dssp SSCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECC--TTTSHHHHHHHHHHHTTTTCSEEEEE
T ss_pred CCCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEc--cccCHHHHHHHHHHHHhcCCeEEEEe
Confidence 34678888777888888889999999999998888765 57888777666554 788855544
No 78
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=77.24 E-value=2.1 Score=41.42 Aligned_cols=49 Identities=31% Similarity=0.591 Sum_probs=33.6
Q ss_pred EEEEEeC-CCCCccceeccC---------------------ccchhHHhhcCCCCCeeeeechHHHHHHHHHhh
Q psy17090 204 VFEWTTD-KLGSQNSICGGG---------------------RYDFLIKKFSNKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 204 vFe~~~~-~~g~~~~ia~GG---------------------RYD~L~~~f~~~~~pavGfai~le~l~~~l~~~ 255 (373)
-|++|.+ +.| .|++|+ .|+.++..+.--..|+.||++|+|||+.++...
T Consensus 346 ~fDl~~~~G~g---Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~ 416 (434)
T 1x54_A 346 ASDMLAPEGYG---EIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKL 416 (434)
T ss_dssp EEEEEETTTTE---EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTC
T ss_pred EEEEEECCCce---EEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCC
Confidence 4888887 542 566663 355566555311358999999999999998654
No 79
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=73.45 E-value=3.1 Score=40.00 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=39.5
Q ss_pred EeecCCChHHHHHHHHHhcCCCCCCeeEEEeeceeecCCCCCCCCcceeeeE-EEEE
Q psy17090 13 LSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIG-VEAI 68 (373)
Q Consensus 13 l~LRpD~T~~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~gr~ref~Q~g-~eii 68 (373)
.+||.-.++..+|.+..+ .| |++.+|.|||.+.....+..+|+|.. +-++
T Consensus 114 ~vLRThts~~~~~~l~~~-----~~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 114 HMLRAHTSAHQWDLLHAG-----LD-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp EEECSSGGGGHHHHHHTT-----CS-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEE
T ss_pred eEEcCCCcHHHHHHHHHC-----CC-CEEEeeeEEeccchhhhhhHHhcCCCcEEEE
Confidence 689999999999987643 25 99999999998765667778888764 4444
No 80
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=72.67 E-value=28 Score=28.89 Aligned_cols=60 Identities=18% Similarity=0.083 Sum_probs=47.4
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHH---HcCCCEEEEEc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRAN---ASNANFAAIIG 326 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~---~~gi~~~vivg 326 (373)
+.|.|+.-+.+++..+.+.+..|...|+..++...+ .++.+++..++++ ..|++-+|.+-
T Consensus 13 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~S--aHR~p~~~~~~~~~a~~~g~~ViIa~A 75 (174)
T 3kuu_A 13 VKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVS--AHRTPDRLFSFAEQAEANGLHVIIAGN 75 (174)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECC--TTTCHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEc--ccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 458888777888888889999999999999888765 6788888877765 47888555443
No 81
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=72.66 E-value=26 Score=29.10 Aligned_cols=61 Identities=8% Similarity=-0.023 Sum_probs=46.7
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHH---HHHcCCCEEEEEc
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR---ANASNANFAAIIG 326 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~---a~~~gi~~~vivg 326 (373)
.+.|.|+..+.+++..+.+.+..|...|+..++...+ .++.+++..++ |+..|++-+|.+-
T Consensus 7 ~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~S--aHR~p~~~~~~~~~a~~~g~~ViIa~A 70 (174)
T 3lp6_A 7 RPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVS--AHRTPEAMFSYARGAAARGLEVIIAGA 70 (174)
T ss_dssp CCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECC--TTTCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEC--CCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 3568888878888888889999999999998888765 56777766666 5668999554443
No 82
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=71.23 E-value=14 Score=32.33 Aligned_cols=46 Identities=24% Similarity=0.155 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 276 AELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
.......++++|++.||+|-+..++ . .++++.|.+.|.+++=+-..
T Consensus 112 ~~~~l~~~i~~L~~~GIrVSLFIDp-----d-~~qi~aA~~~GA~~IELhTG 157 (243)
T 1m5w_A 112 QRDKMRDACKRLADAGIQVSLFIDA-----D-EEQIKAAAEVGAPFIEIHTG 157 (243)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEEECS-----C-HHHHHHHHHTTCSEEEEECH
T ss_pred hHHHHHHHHHHHHHCCCEEEEEeCC-----C-HHHHHHHHHhCcCEEEEech
Confidence 4566678899999999999998875 3 46999999999999877543
No 83
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=69.67 E-value=35 Score=28.22 Aligned_cols=60 Identities=8% Similarity=-0.062 Sum_probs=46.8
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHH---HcCCCEEEEEc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRAN---ASNANFAAIIG 326 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~---~~gi~~~vivg 326 (373)
+.|.|+.-+.+++..+.+.+..|...|+..++...+ .++.+++..++++ ..|++-+|.+-
T Consensus 12 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~S--aHR~p~~l~~~~~~a~~~g~~ViIa~A 74 (170)
T 1xmp_A 12 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVS--AHRTPDYMFEYAETARERGLKVIIAGA 74 (170)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECC--TTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEe--ccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 568888778888888899999999999998888765 5688888877765 46788444443
No 84
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=68.89 E-value=28 Score=28.74 Aligned_cols=60 Identities=10% Similarity=0.034 Sum_probs=46.3
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHH---HHcCCCEEEEEc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRA---NASNANFAAIIG 326 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a---~~~gi~~~vivg 326 (373)
+.|.|+..+.+++..+.+.+..|...|+..++...+ .++++++..+++ +..|++-+|.+-
T Consensus 7 ~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~S--aHR~p~~~~~~~~~a~~~g~~ViIa~A 69 (169)
T 3trh_A 7 IFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILS--AHRTPKETVEFVENADNRGCAVFIAAA 69 (169)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECC--TTTSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEc--ccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 468888777888888889999999999999888765 567877777664 458888544443
No 85
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=68.82 E-value=14 Score=33.02 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCCCCCCCceEEEEEcCc------------hhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHH
Q psy17090 246 ERLIELIKKININHNFSHQCDIYIVHVGK------------EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR 313 (373)
Q Consensus 246 e~l~~~l~~~~~~~~~~~~~~v~v~~~~~------------~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~ 313 (373)
+.++++..+. +|-+|+++|-.. ........++++|++.||+|-+..++ . .++++.
T Consensus 105 ~emi~ial~~-------kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDp-----d-~~qI~a 171 (278)
T 3gk0_A 105 PEMLDIACEI-------RPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDP-----D-EAQIRA 171 (278)
T ss_dssp HHHHHHHHHH-------CCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECS-----C-HHHHHH
T ss_pred HHHHHHHHHc-------CCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCC-----C-HHHHHH
Confidence 4555555443 245666666542 23456667889999999999988875 3 458999
Q ss_pred HHHcCCCEEEEEc
Q psy17090 314 ANASNANFAAIIG 326 (373)
Q Consensus 314 a~~~gi~~~vivg 326 (373)
|.+.|.+++=+-.
T Consensus 172 A~~~GAd~IELhT 184 (278)
T 3gk0_A 172 AHETGAPVIELHT 184 (278)
T ss_dssp HHHHTCSEEEECC
T ss_pred HHHhCcCEEEEec
Confidence 9999999987643
No 86
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=68.08 E-value=41 Score=27.59 Aligned_cols=60 Identities=10% Similarity=-0.046 Sum_probs=46.4
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHH---HcCCCEEEEEc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRAN---ASNANFAAIIG 326 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~---~~gi~~~vivg 326 (373)
..|.|+.-+.+++..+.+.+..|...|+..++...+ .++.+++..++++ ..|++-+|.+-
T Consensus 4 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~S--aHR~p~~~~~~~~~a~~~g~~ViIa~A 66 (163)
T 3ors_A 4 MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVS--AHRTPKMMVQFASEARERGINIIIAGA 66 (163)
T ss_dssp CCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECC--TTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEC--CcCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 457888777888888889999999999998887765 5788888877765 46888444443
No 87
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=67.16 E-value=45 Score=27.42 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=47.6
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHH---cCCCEEEEEcc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANA---SNANFAAIIGE 327 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~---~gi~~~vivg~ 327 (373)
+.|.|+..+.+++..+.+.+..|...|+..++...+ .++++++..++++. .|++-+|.+-.
T Consensus 6 p~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~S--aHRtp~~l~~~~~~~~~~g~~ViIa~AG 69 (166)
T 3oow_A 6 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVS--AHRTPDKMFDYAETAKERGLKVIIAGAG 69 (166)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECC--TTTCHHHHHHHHHHTTTTTCCEEEEEEC
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEc--CcCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 468888777888888889999999999998888765 57888888888764 57765555543
No 88
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=65.35 E-value=50 Score=27.59 Aligned_cols=59 Identities=12% Similarity=-0.115 Sum_probs=46.8
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHH---HcCCCEEEEE
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRAN---ASNANFAAII 325 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~---~~gi~~~viv 325 (373)
..|.|+.-+.+++..+.+.+..|...|+..++...+ .++.+++..++++ ..|++-+|.+
T Consensus 22 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~S--aHR~p~~l~~~~~~a~~~g~~ViIa~ 83 (182)
T 1u11_A 22 PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVS--AHRTPDRLADYARTAAERGLNVIIAG 83 (182)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECC--TTTCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred CEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEc--ccCCHHHHHHHHHHHHhCCCcEEEEe
Confidence 468888878888888899999999999998888765 5788888877776 4678844444
No 89
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=64.69 E-value=50 Score=27.61 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=46.3
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHH---HcCCCEEEEE
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRAN---ASNANFAAII 325 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~---~~gi~~~viv 325 (373)
+.|.|+..+.+++..+.+.+..|...|+..++...+ .++++++..++++ ..|++-+|.+
T Consensus 14 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~S--aHR~p~~l~~~~~~a~~~g~~ViIa~ 75 (183)
T 1o4v_A 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVS--AHRTPDRMFEYAKNAEERGIEVIIAG 75 (183)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECC--TTTCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEc--ccCCHHHHHHHHHHHHhCCCcEEEEe
Confidence 568888878888888899999999999998888765 5688887777765 4678844444
No 90
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=64.28 E-value=5.9 Score=38.51 Aligned_cols=49 Identities=24% Similarity=0.473 Sum_probs=35.8
Q ss_pred EEEEEeCCCCCccceecc----CccchhHHhhcC-----------------CCCCeeeeechHHHHHHHHHhh
Q psy17090 204 VFEWTTDKLGSQNSICGG----GRYDFLIKKFSN-----------------KFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 204 vFe~~~~~~g~~~~ia~G----GRYD~L~~~f~~-----------------~~~pavGfai~le~l~~~l~~~ 255 (373)
-|++|.++. ..|++| =+|+.|..+|.. -..|.-||++|+|||+.++...
T Consensus 369 rfdL~~~G~---gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~ 438 (456)
T 3m4p_A 369 SVDLLMPGV---GEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGE 438 (456)
T ss_dssp EEEEEETTT---EEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTC
T ss_pred EEEEEeCCc---eEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCC
Confidence 499999853 267777 357777766531 1357789999999999998764
No 91
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=64.19 E-value=12 Score=33.13 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 279 KAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 279 ~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
....+.++|+++||+|-+..++ . .++++.|.+.|.+++=+-.
T Consensus 112 ~L~~~i~~L~~~GIrVSLFIDp-----d-~~qi~aA~~~GAd~IELhT 153 (260)
T 3o6c_A 112 KLKQSIEKLQNANIEVSLFINP-----S-LEDIEKSKILKAQFIELHT 153 (260)
T ss_dssp THHHHHHHHHHTTCEEEEEECS-----C-HHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEeCC-----C-HHHHHHHHHhCCCEEEEec
Confidence 4456788999999999988875 3 4589999999999987743
No 92
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=63.60 E-value=22 Score=30.83 Aligned_cols=94 Identities=15% Similarity=0.092 Sum_probs=54.5
Q ss_pred cceeccCccchhHHhhcCCCCCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCc---------------------
Q psy17090 216 NSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGK--------------------- 274 (373)
Q Consensus 216 ~~ia~GGRYD~L~~~f~~~~~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~--------------------- 274 (373)
-.|+.||=+.-|-+. .++|.|-..+.---++.++....... ..+.|+.+++
T Consensus 66 VIISRGgta~~Lr~~---~~iPVV~I~vs~~Dil~aL~~a~~~~-----~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~ 137 (225)
T 2pju_A 66 AIIAAGSNGAYLKSR---LSVPVILIKPSGYDVLQFLAKAGKLT-----SSIGVVTYQETIPALVAFQKTFNLRLDQRSY 137 (225)
T ss_dssp EEEEEHHHHHHHHTT---CSSCEEEECCCHHHHHHHHHHTTCTT-----SCEEEEEESSCCHHHHHHHHHHTCCEEEEEE
T ss_pred EEEeCChHHHHHHhh---CCCCEEEecCCHHHHHHHHHHHHhhC-----CcEEEEeCchhhhHHHHHHHHhCCceEEEEe
Confidence 367777777665433 35888877777666677776543211 2344443332
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 275 EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 275 ~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
...+++....++|.+.|+.+.+-..- ..+.|++.|++.+++-+
T Consensus 138 ~~~ee~~~~i~~l~~~G~~vVVG~~~---------~~~~A~~~Gl~~vlI~s 180 (225)
T 2pju_A 138 ITEEDARGQINELKANGTEAVVGAGL---------ITDLAEEAGMTGIFIYS 180 (225)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEESHH---------HHHHHHHTTSEEEESSC
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCHH---------HHHHHHHcCCcEEEECC
Confidence 11235556667777777777554332 45667777777666653
No 93
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=62.63 E-value=58 Score=26.59 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=45.2
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHH---c-CCCEEEEEc
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANA---S-NANFAAIIG 326 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~---~-gi~~~vivg 326 (373)
+.|.|+.-+.+++..+.+.+..|...|+..++...+ .++.+++..++++. . |+.-+|.+-
T Consensus 3 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~s--aHR~p~~~~~~~~~a~~~~~~~ViIa~A 66 (159)
T 3rg8_A 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGS--AHKTAEHVVSMLKEYEALDRPKLYITIA 66 (159)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECC--TTTCHHHHHHHHHHHHTSCSCEEEEEEC
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEc--ccCCHHHHHHHHHHhhhcCCCcEEEEEC
Confidence 357788777888888889999999999999888765 67888888777643 3 455554443
No 94
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=60.91 E-value=15 Score=31.14 Aligned_cols=94 Identities=12% Similarity=0.112 Sum_probs=52.4
Q ss_pred cceeccCccchhHHhhcCCCCCeeeeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCc---------------------
Q psy17090 216 NSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGK--------------------- 274 (373)
Q Consensus 216 ~~ia~GGRYD~L~~~f~~~~~pavGfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~--------------------- 274 (373)
-.|+.||=+.-|-+. .++|.|-..+.---++.++....... ..+.|+.+++
T Consensus 54 VIISRGgta~~lr~~---~~iPVV~I~~s~~Dil~al~~a~~~~-----~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~ 125 (196)
T 2q5c_A 54 AIISRGATSDYIKKS---VSIPSISIKVTRFDTMRAVYNAKRFG-----NELALIAYKHSIVDKHEIEAMLGVKIKEFLF 125 (196)
T ss_dssp EEEEEHHHHHHHHTT---CSSCEEEECCCHHHHHHHHHHHGGGC-----SEEEEEEESSCSSCHHHHHHHHTCEEEEEEE
T ss_pred EEEECChHHHHHHHh---CCCCEEEEcCCHhHHHHHHHHHHhhC-----CcEEEEeCcchhhHHHHHHHHhCCceEEEEe
Confidence 367777777765443 35888877777666666665532110 1233332221
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 275 EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 275 ~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
....++.+..++|.+.|+.+.+-..- ..+.|++.|++.+++-.
T Consensus 126 ~~~~e~~~~i~~l~~~G~~vvVG~~~---------~~~~A~~~Gl~~vli~s 168 (196)
T 2q5c_A 126 SSEDEITTLISKVKTENIKIVVSGKT---------VTDEAIKQGLYGETINS 168 (196)
T ss_dssp CSGGGHHHHHHHHHHTTCCEEEECHH---------HHHHHHHTTCEEEECCC
T ss_pred CCHHHHHHHHHHHHHCCCeEEECCHH---------HHHHHHHcCCcEEEEec
Confidence 01123445667777777777554332 46667777777766543
No 95
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=57.80 E-value=9.1 Score=38.03 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=34.0
Q ss_pred EEEEEeCCCCCccceeccCc----cchhHHhhcC-----------------CCCCeeeeechHHHHHHHHHhh
Q psy17090 204 VFEWTTDKLGSQNSICGGGR----YDFLIKKFSN-----------------KFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 204 vFe~~~~~~g~~~~ia~GGR----YD~L~~~f~~-----------------~~~pavGfai~le~l~~~l~~~ 255 (373)
-|++|+++ ..|++|+. |+.+.++|.. -..|+-||++|+|||+.++...
T Consensus 462 rFDL~i~G----~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~ 530 (548)
T 3i7f_A 462 SYDVFVRG----QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGI 530 (548)
T ss_dssp EEEEEETT----EEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTC
T ss_pred EEEEEECC----EEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCC
Confidence 59999974 46777764 5555554421 1357889999999999998653
No 96
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=53.51 E-value=13 Score=36.48 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=33.1
Q ss_pred ceEEEEEeCCCCCccceeccC-----------------------ccchhHHhhcCCCCCeeeeechHHHHHHHHHhh
Q psy17090 202 RTVFEWTTDKLGSQNSICGGG-----------------------RYDFLIKKFSNKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 202 G~vFe~~~~~~g~~~~ia~GG-----------------------RYD~L~~~f~~~~~pavGfai~le~l~~~l~~~ 255 (373)
.--|++++++ ..|++|+ -|..++..+.--..|.-||++|+|||+.++...
T Consensus 397 ~~~fDL~~~G----~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvmll~g~ 469 (487)
T 1eov_A 397 SNSYDFFMRG----EEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDL 469 (487)
T ss_dssp BSEEEEEETT----EEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTC
T ss_pred EEEEEEEeCC----EEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCC
Confidence 4568888874 3566654 233444443211357899999999999998764
No 97
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=51.66 E-value=13 Score=35.73 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=34.1
Q ss_pred eEEEEEeCCCCCccceeccC----ccchhHHhhc-----------------CCCCCeeeeechHHHHHHHHHhh
Q psy17090 203 TVFEWTTDKLGSQNSICGGG----RYDFLIKKFS-----------------NKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 203 ~vFe~~~~~~g~~~~ia~GG----RYD~L~~~f~-----------------~~~~pavGfai~le~l~~~l~~~ 255 (373)
--|+++.++. ..|++|+ +|+.+..+|. --..|..||++|+|||+.++...
T Consensus 347 ~~fdl~~~G~---~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~ 417 (435)
T 2xgt_A 347 ESVDLLMPGV---GEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNT 417 (435)
T ss_dssp SEEEEEETTT---EEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTC
T ss_pred EEEEEEcCCc---eEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCC
Confidence 4689998853 2667663 3444444442 01357899999999999999774
No 98
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=51.30 E-value=42 Score=29.89 Aligned_cols=57 Identities=9% Similarity=0.127 Sum_probs=41.1
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCE
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANF 321 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~ 321 (373)
..|+|++-..+.-.+++-+|+.|+..|+.|.+.+...........+++.++..|+++
T Consensus 80 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~g~~~ 136 (265)
T 2o8n_A 80 PTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPF 136 (265)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCSCCSSHHHHHHHHHHHHTTCCB
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCcE
Confidence 367777765667789999999999999999997543101123455677788888874
No 99
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=49.24 E-value=54 Score=28.72 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=40.9
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccC-ccccCHHHHHHHHHHcCCCE
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFN-NIHESFKSQMKRANASNANF 321 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~-~~~~sl~~~~~~a~~~gi~~ 321 (373)
..|+|++-..+.-.+++-+|+.|+..|+.|.+.+... ........+++.++..|+++
T Consensus 59 ~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (246)
T 1jzt_A 59 KHVFVIAGPGNNGGDGLVCARHLKLFGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPV 116 (246)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCCEEEECCCCCTTCHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEcCCCCCCHHHHHHHHHHHHcCCcE
Confidence 3677777656677899999999999999999976431 00112344577788889885
No 100
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=48.44 E-value=27 Score=31.52 Aligned_cols=68 Identities=19% Similarity=0.359 Sum_probs=40.4
Q ss_pred HHHHhCCC-cEEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhH-HhhcCCCCCeeeeechHHHHHHHHHh
Q psy17090 178 KILNYNNI-SYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLI-KKFSNKFVPASGFAIGIERLIELIKK 254 (373)
Q Consensus 178 ~~l~~~g~-~i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~-~~f~~~~~pavGfai~le~l~~~l~~ 254 (373)
.+++.+|+ .+.+-..-.. . + |-.+.++.. + ..|++||=-.+.+ .+|+ -+.|..||++++|||+.++..
T Consensus 197 ~ll~~LGl~~~~~~~~s~e-~--~-~~~~~l~~~--~--~eig~~Gv~p~vl~~~~g-i~~~~~gfglglerl~m~~~g 266 (288)
T 3dsq_A 197 WVLEAAGIREFELVTESSV-V--Y-GDTVDVMKG--D--LELASGAMGPHFLDEKWE-IFDPWVGLGFGLERLLMIREG 266 (288)
T ss_dssp HHHHHHTCCCCEEEECCCC-S--S-CCCEEEEET--T--EEEEEEEEESCTTTTTTT-CCSCEEEEEEEHHHHHHHHHT
T ss_pred HHHHHcCCCCcEEecCCcc-e--E-EEEEEEEeC--C--EEEEEEEecHHHHHHhcC-CCCCeEEEEECHHHHHHHHcC
Confidence 34455677 3544332111 1 1 333555544 2 5788888333555 6775 345788999999999988755
No 101
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=46.90 E-value=1.1e+02 Score=29.23 Aligned_cols=62 Identities=8% Similarity=0.089 Sum_probs=47.5
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHH---HHHcCCCEEEEEcc
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR---ANASNANFAAIIGE 327 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~---a~~~gi~~~vivg~ 327 (373)
...|.|+..+.+....+.+.+..|...|+..++-..+ .++.++...++ |+..|++-++|.+.
T Consensus 265 ~~~V~Ii~gs~SD~~~~~~a~~~l~~~gi~~~v~V~s--aHR~p~~~~~~~~~~~~~g~~~viIa~A 329 (425)
T 2h31_A 265 QCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTS--AHKGPDETLRIKAEYEGDGIPTVFVAVA 329 (425)
T ss_dssp CCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECC--TTTCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCeEEEEecCcccHHHHHHHHHHHHHcCCceEEeeee--ccCCHHHHHHHHHHHHHCCCCeEEEEEc
Confidence 3568888888888888899999999999998888765 56777776555 45688875555543
No 102
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=46.30 E-value=1.3e+02 Score=25.06 Aligned_cols=59 Identities=8% Similarity=-0.063 Sum_probs=44.3
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHH---cCCCEEEEE
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANA---SNANFAAII 325 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~---~gi~~~viv 325 (373)
+.|.|+--+.+++....+.++.|...|+..++..-+ .++++++..++++. .|++.+|..
T Consensus 23 p~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V~S--AHRtp~~l~~~~~~a~~~g~~ViIa~ 84 (181)
T 4b4k_A 23 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVS--AHRTPDYMFEYAETARERGLKVIIAG 84 (181)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECC--TTTSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred ccEEEEECCHhHHHHHHHHHHHHHHcCCCeeEEEEc--cccChHHHHHHHHHHHhcCceEEEEe
Confidence 347777667778888888999999999998888765 56888777777654 677655544
No 103
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=45.33 E-value=1.2e+02 Score=24.58 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=44.6
Q ss_pred EEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEE
Q psy17090 267 IYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAII 325 (373)
Q Consensus 267 v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~viv 325 (373)
|.|+..+.+++..+.+.+..|...|+..++...+ .++.+++..++++.....-+|.+
T Consensus 2 V~Iimgs~SD~~v~~~a~~~l~~~gi~~dv~V~s--aHR~p~~~~~~~~~a~~~ViIa~ 58 (157)
T 2ywx_A 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVAS--AHRTPELVEEIVKNSKADVFIAI 58 (157)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECC--TTTCHHHHHHHHHHCCCSEEEEE
T ss_pred EEEEEccHHHHHHHHHHHHHHHHcCCCeEEEEEc--ccCCHHHHHHHHHhcCCCEEEEE
Confidence 5677777788888889999999999998888765 67999999999886555444333
No 104
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=45.10 E-value=11 Score=35.19 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=21.1
Q ss_pred hHHhhcCCCCCeeeeechHHHHHHHHHhh
Q psy17090 227 LIKKFSNKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 227 L~~~f~~~~~pavGfai~le~l~~~l~~~ 255 (373)
++..+.--..|..||++|+|||+.++...
T Consensus 303 yl~al~yG~PPhgG~glGiDRLvmll~g~ 331 (345)
T 3a5y_A 303 LIEALKVGMPDCSGVALGVDRLVMLALGA 331 (345)
T ss_dssp HHHHHHHCCCSEEEEEEEHHHHHHHHHTC
T ss_pred HHHHHhcCCCCCcEEEEcHHHHHHHHcCC
Confidence 45444211358999999999999999774
No 105
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=43.15 E-value=1.1e+02 Score=23.30 Aligned_cols=61 Identities=11% Similarity=0.015 Sum_probs=41.5
Q ss_pred ceEEEEEcCch---hHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 265 CDIYIVHVGKE---AELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 265 ~~v~v~~~~~~---~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
.-++++.-|.. .......+++.|++.+..|.+.+-+ ...+++.+.++.+...|++.++++-
T Consensus 6 ~alllv~HGS~~~~~~~~~~~l~~~l~~~~~~V~~a~le-~~~P~l~~~l~~l~~~G~~~vvvvP 69 (126)
T 3lyh_A 6 HQIILLAHGSSDARWCETFEKLAEPTVESIENAAIAYME-LAEPSLDTIVNRAKGQGVEQFTVVP 69 (126)
T ss_dssp EEEEEEECCCSCHHHHHHHHHHHHHHHHHSTTCEEEESS-SSSSBHHHHHHHHHHTTCCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHhhcCCEEEEEEe-CCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 34556665532 2344567888888876566655431 1227999999999999999988874
No 106
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=41.62 E-value=43 Score=29.84 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCc-EEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhH---HhhcC--CCCCeeeeec---
Q psy17090 173 FYGIQKILNYNNIS-YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLI---KKFSN--KFVPASGFAI--- 243 (373)
Q Consensus 173 l~~l~~~l~~~g~~-i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~---~~f~~--~~~pavGfai--- 243 (373)
..++.+.|.+-|.+ +.++.-+ .-.++.|.+.|-- ..+++..|=+.+..+ +.+.. .+.|-+.++.
T Consensus 34 ~~~~~~~l~~~GaD~iElgiPf--SDP~aDGp~Iq~a-----~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~np 106 (267)
T 3vnd_A 34 SLKIIQTLVDNGADALELGFPF--SDPLADGPVIQGA-----NLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANL 106 (267)
T ss_dssp HHHHHHHHHHTTCSSEEEECCC--SCCTTCCHHHHHH-----HHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHH
T ss_pred HHHHHHHHHHcCCCEEEECCCC--CCCCCCCHHHHHH-----HHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcH
Confidence 34455566667887 6666533 2234455543321 124555665555433 33321 3467665433
Q ss_pred ----hHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCC
Q psy17090 244 ----GIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNA 319 (373)
Q Consensus 244 ----~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi 319 (373)
++++.+..+.+.| .|.+|++.-+ .+++.++.+.+++.|+...+...+ .+..+.++...+..-
T Consensus 107 v~~~g~e~f~~~~~~aG--------vdgvii~Dlp--~ee~~~~~~~~~~~gl~~i~liaP----~t~~eri~~i~~~~~ 172 (267)
T 3vnd_A 107 VFANGIDEFYTKAQAAG--------VDSVLIADVP--VEESAPFSKAAKAHGIAPIFIAPP----NADADTLKMVSEQGE 172 (267)
T ss_dssp HHHHCHHHHHHHHHHHT--------CCEEEETTSC--GGGCHHHHHHHHHTTCEEECEECT----TCCHHHHHHHHHHCC
T ss_pred HHHhhHHHHHHHHHHcC--------CCEEEeCCCC--HhhHHHHHHHHHHcCCeEEEEECC----CCCHHHHHHHHHhCC
Confidence 4577777776665 3444443221 234556667777888877666655 444455555555554
Q ss_pred CEEEEE
Q psy17090 320 NFAAII 325 (373)
Q Consensus 320 ~~~viv 325 (373)
.|+-++
T Consensus 173 gfvY~v 178 (267)
T 3vnd_A 173 GYTYLL 178 (267)
T ss_dssp SCEEES
T ss_pred CcEEEE
Confidence 454443
No 107
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=40.46 E-value=33 Score=30.63 Aligned_cols=131 Identities=8% Similarity=0.089 Sum_probs=75.3
Q ss_pred HHHHHHHHhCCCc-EEEecCCCCCCCCccceEEEEEeCCCCCccceeccCccchhHH---hhcC--CCCCeeeee-----
Q psy17090 174 YGIQKILNYNNIS-YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIK---KFSN--KFVPASGFA----- 242 (373)
Q Consensus 174 ~~l~~~l~~~g~~-i~~D~~~~r~~~YYtG~vFe~~~~~~g~~~~ia~GGRYD~L~~---~f~~--~~~pavGfa----- 242 (373)
.++.+.|..-|.+ +.+..- ..-.++.|.+.|- ...+++..|=+.++.++ .+.. .+.|-+.++
T Consensus 37 ~~~~~~l~~~GaD~iElGiP--fSDP~aDGpvIq~-----a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v 109 (271)
T 3nav_A 37 LAIMQTLIDAGADALELGMP--FSDPLADGPTIQG-----ANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLV 109 (271)
T ss_dssp HHHHHHHHHTTCSSEEEECC--CCCGGGCCSHHHH-----HHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHH
T ss_pred HHHHHHHHHcCCCEEEECCC--CCCCCCCCHHHHH-----HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHH
Confidence 3444555556776 444332 2344566766542 11256777777765443 3321 356776643
Q ss_pred --chHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCC
Q psy17090 243 --IGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNAN 320 (373)
Q Consensus 243 --i~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~ 320 (373)
.++++.+..+.+.| .|.+|++--+ .+++.++.+.+++.|+...+...+ .+..+.++...+.+-.
T Consensus 110 ~~~g~~~f~~~~~~aG--------vdGvIipDlp--~ee~~~~~~~~~~~gl~~I~lvap----~t~~eri~~i~~~~~g 175 (271)
T 3nav_A 110 YARGIDDFYQRCQKAG--------VDSVLIADVP--TNESQPFVAAAEKFGIQPIFIAPP----TASDETLRAVAQLGKG 175 (271)
T ss_dssp HHTCHHHHHHHHHHHT--------CCEEEETTSC--GGGCHHHHHHHHHTTCEEEEEECT----TCCHHHHHHHHHHCCS
T ss_pred HHHhHHHHHHHHHHCC--------CCEEEECCCC--HHHHHHHHHHHHHcCCeEEEEECC----CCCHHHHHHHHHHCCC
Confidence 56788887777766 3444544211 234556777788888887666665 4555666666666666
Q ss_pred EEEEE
Q psy17090 321 FAAII 325 (373)
Q Consensus 321 ~~viv 325 (373)
|+-.+
T Consensus 176 fiY~v 180 (271)
T 3nav_A 176 YTYLL 180 (271)
T ss_dssp CEEEC
T ss_pred eEEEE
Confidence 65554
No 108
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=40.04 E-value=33 Score=23.85 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHCCCCceEEEeC
Q psy17090 77 AELIIMCSRLWKNLNLKNICLELN 100 (373)
Q Consensus 77 ~Evi~l~~~~l~~lg~~~~~i~i~ 100 (373)
.|++.++...|+.||.+++.+++|
T Consensus 63 kelleliarllqklgykdinvrvn 86 (96)
T 2jvf_A 63 KELLELIARLLQKLGYKDINVRVN 86 (96)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEc
Confidence 444444444444444444444444
No 109
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=39.96 E-value=68 Score=25.27 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=34.7
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCC
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNAN 320 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~ 320 (373)
++|+.|+.... ....++++.+-+.|+++.+...+ ..-.+..+.|++.|++
T Consensus 77 ~vDlvvi~vp~---~~~~~vv~~~~~~gi~~i~~~~g----~~~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 77 KIEVVDLFVKP---KLTMEYVEQAIKKGAKVVWFQYN----TYNREASKKADEAGLI 126 (144)
T ss_dssp CCSEEEECSCH---HHHHHHHHHHHHHTCSEEEECTT----CCCHHHHHHHHHTTCE
T ss_pred CCCEEEEEeCH---HHHHHHHHHHHHcCCCEEEECCC----chHHHHHHHHHHcCCE
Confidence 47777777654 34456677777888887665544 3456677888888887
No 110
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=38.64 E-value=1.1e+02 Score=27.80 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=46.3
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCc-cccCHHHHHHHHHHcCCCEEEEEccCccc--CCeEEEEEC
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNN-IHESFKSQMKRANASNANFAAIIGENEII--NNTLIIKDL 340 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~-~~~sl~~~~~~a~~~gi~~~vivg~~e~~--~~~v~Vk~l 340 (373)
..|+|++-....-.+++-+|+.|+..|+.|.+.+.... .......+++.++..|++.. -....+. .-.+.|=-+
T Consensus 133 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~V~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~l~~~~~dlIIDAL 209 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQV--SSLKDLPTSPVDLVINCL 209 (306)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCCCSSCCHHHHHHHHHHHTSSCEEE--SCSTTSCSSCCSEEEEEC
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCcEEEEEecCCCCCHHHHHHHHHHHHcCCccc--cchhhhccCCCCEEEECC
Confidence 46788776666778999999999999999998754310 00113455666677777632 1111221 235667777
No 111
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=38.07 E-value=38 Score=26.29 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=26.5
Q ss_pred ceEEEEEcCchhH-HHHHHHHHHHHHcCCeEEEEecc
Q psy17090 265 CDIYIVHVGKEAE-LKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 265 ~~v~v~~~~~~~~-~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
++++|+..|.... .---++.+.|+++||.++++..+
T Consensus 62 ~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 62 VQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp CSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 7899988875432 12346678899999999998764
No 112
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=38.07 E-value=1.3e+02 Score=24.77 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEe-ccCc---cccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 276 AELKAFVLSENLRTLGLKVILNC-VFNN---IHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~Gi~v~~~~-~~~~---~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
.+.-+..+.+.|.+.|+.|++.. +++. ...++.+..+.|++.++..+|-|--+
T Consensus 31 ~l~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~N 87 (180)
T 3qay_A 31 NKSLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLN 87 (180)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeC
Confidence 35677888999999999974433 3210 01148899999999999999998654
No 113
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=38.02 E-value=33 Score=33.58 Aligned_cols=21 Identities=33% Similarity=0.787 Sum_probs=18.2
Q ss_pred CCCeeeeechHHHHHHHHHhh
Q psy17090 235 FVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 235 ~~pavGfai~le~l~~~l~~~ 255 (373)
..|.-||++|+|||+.++...
T Consensus 458 ~PPhgG~glGiDRLvmlltg~ 478 (493)
T 3a74_A 458 MPPTGGLGIGVDRLVMLLTNS 478 (493)
T ss_dssp CCSEEEEEEEHHHHHHHHHTC
T ss_pred CCCceeEEEcHHHHHHHHhCC
Confidence 358999999999999999774
No 114
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=37.83 E-value=95 Score=24.25 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=35.1
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCE
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANF 321 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~ 321 (373)
.+|+.|+.... ....++++.+-+.|++..+.... ..-.+..+.|++.|+.+
T Consensus 69 ~vDlvii~vp~---~~v~~v~~~~~~~g~~~i~~~~~----~~~~~l~~~a~~~Gi~~ 119 (138)
T 1y81_A 69 DVDVIVFVVPP---KVGLQVAKEAVEAGFKKLWFQPG----AESEEIRRFLEKAGVEY 119 (138)
T ss_dssp TCCEEEECSCH---HHHHHHHHHHHHTTCCEEEECTT----SCCHHHHHHHHHHTCEE
T ss_pred CCCEEEEEeCH---HHHHHHHHHHHHcCCCEEEEcCc----cHHHHHHHHHHHCCCEE
Confidence 47888777653 34456666777788888666654 34566778888888873
No 115
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=36.33 E-value=1.3e+02 Score=22.40 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=53.6
Q ss_pred ceEEEEEcCc---hhHHHHHHHHHHHHHcCCeEEEEeccCc---cc----cCHHHHHHHHHHcCCCEEEEEccCcccCCe
Q psy17090 265 CDIYIVHVGK---EAELKAFVLSENLRTLGLKVILNCVFNN---IH----ESFKSQMKRANASNANFAAIIGENEIINNT 334 (373)
Q Consensus 265 ~~v~v~~~~~---~~~~~~~~la~~Lr~~Gi~v~~~~~~~~---~~----~sl~~~~~~a~~~gi~~~vivg~~e~~~~~ 334 (373)
.++.|+|.+. +......++.+.|++.|++..+..-+-. .+ .-+++..+.+.+.|++.++.+
T Consensus 8 ve~sv~Plg~~~~svs~~Va~~i~~i~~sGl~y~~~pm~T~IEGe~devm~vv~~~~e~~~~~G~~RV~~~--------- 78 (104)
T 1lxj_A 8 ADVCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYGHEKGYVRVHTD--------- 78 (104)
T ss_dssp EEEEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEE---------
T ss_pred EEEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEeCCCccEEEcCHHHHHHHHHHHHHHHHHcCCCeEEEE---------
Confidence 5677888873 4456667778888999999877653200 01 122555666777899888775
Q ss_pred EEEEECCCCCCCCCccceeecHHHHHHHHHHHH
Q psy17090 335 LIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367 (373)
Q Consensus 335 v~Vk~l~~~~~~~~~~~~~v~~~el~~~l~~~~ 367 (373)
+++-++.. ...++++-++.+.+.|
T Consensus 79 iKid~R~d---------~~~~~~~Kv~~v~~~l 102 (104)
T 1lxj_A 79 IRVGTRTD---------KHQTAQDKIDVVLKKI 102 (104)
T ss_dssp EEEECCSS---------CCCCHHHHHHHHHHHH
T ss_pred EEEEecCC---------CCCCHHHHHHHHHHHh
Confidence 34433322 2567777777776665
No 116
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=36.06 E-value=1.1e+02 Score=26.96 Aligned_cols=73 Identities=10% Similarity=0.054 Sum_probs=45.3
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccC--HHHHHHHHHHcCCCEEEEEccCccc--CCeEEEEEC
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHES--FKSQMKRANASNANFAAIIGENEII--NNTLIIKDL 340 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~s--l~~~~~~a~~~gi~~~vivg~~e~~--~~~v~Vk~l 340 (373)
..|+|++-..+.-.+++-+|+.|+..|+.|.+.+-.. .... ...+++.++..|.++. -....+. .-.+.|=-+
T Consensus 86 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~-~~~~~~a~~~~~~~~~~g~~~~--~~~~~l~~~~~dlIVDAL 162 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNF-VKMLESITNELSLFSKTQGQQV--SSLKDLPTSPVDLVINCL 162 (259)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCBC-SSCCHHHHHHHHHHTTSSCEEE--SCGGGSCSSCCSEEEEEC
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEecC-CCCCHHHHHHHHHHHHcCCCcc--cchhhhccCCCCEEEECC
Confidence 3677877666677899999999999999999875431 0012 2344555666676532 1111221 235667777
No 117
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=34.07 E-value=24 Score=33.96 Aligned_cols=49 Identities=29% Similarity=0.571 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCCccceeccCc----cchhHHhhc-----------------CCCCCeeeeechHHHHHHHHHhh
Q psy17090 203 TVFEWTTDKLGSQNSICGGGR----YDFLIKKFS-----------------NKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 203 ~vFe~~~~~~g~~~~ia~GGR----YD~L~~~f~-----------------~~~~pavGfai~le~l~~~l~~~ 255 (373)
--|++|.++ ..||+|+- |+.+.++|. --..|+-||++|+|||+.++...
T Consensus 351 ~rfdL~~~G----~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~ 420 (438)
T 3nem_A 351 RAFDLEYRG----VEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDL 420 (438)
T ss_dssp SEEEEEETT----EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTC
T ss_pred EEEEEEECC----EEEEeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCC
Confidence 479999985 36676652 444444431 11357889999999999998664
No 118
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=33.51 E-value=23 Score=33.84 Aligned_cols=50 Identities=30% Similarity=0.529 Sum_probs=33.0
Q ss_pred ceEEEEEeCCCCCccceeccCc----cchhHHhh-----------------cCCCCCeeeeechHHHHHHHHHhh
Q psy17090 202 RTVFEWTTDKLGSQNSICGGGR----YDFLIKKF-----------------SNKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 202 G~vFe~~~~~~g~~~~ia~GGR----YD~L~~~f-----------------~~~~~pavGfai~le~l~~~l~~~ 255 (373)
.--|+++.++ ..|++|+- |+.+..+| .--..|..||++|+|||+.++...
T Consensus 334 ~~~fDL~~~G----~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~ 404 (422)
T 1n9w_A 334 TRSFDLLFRG----LEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGL 404 (422)
T ss_dssp BSEEEEEETT----EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTC
T ss_pred EEEEEEEECC----EEEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCC
Confidence 4569999985 35666642 33333333 211358999999999999998764
No 119
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=33.01 E-value=23 Score=35.43 Aligned_cols=30 Identities=30% Similarity=0.587 Sum_probs=21.6
Q ss_pred hhHHhhcCCCCCeeeeechHHHHHHHHHhh
Q psy17090 226 FLIKKFSNKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 226 ~L~~~f~~~~~pavGfai~le~l~~~l~~~ 255 (373)
.++..+.--..|..||++|+|||+.++...
T Consensus 516 ~yL~al~yG~PPhgG~glGlDRLvmlltg~ 545 (585)
T 1c0a_A 516 FLLDALKYGTPPHAGLAFGLDRLTMLLTGT 545 (585)
T ss_dssp HHHHHTTTTCCCEEEEEEEHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCceeEEEcHHHHHHHHcCC
Confidence 344444311358899999999999999775
No 120
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=32.76 E-value=88 Score=27.88 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=50.0
Q ss_pred CCceEeecCCChHHHHHHH-HH-hcCCCCCCeeEEEeeceeecCCCCC----CCCcceeeeEEEEEcCCCchhhHHHHHH
Q psy17090 9 NGDNLSLRPEGTASVIRSV-IE-NNLIYDGPKRLWYSGPMFRHERPQY----GRYRQFYQIGVEAIGFPGPDIDAELIIM 82 (373)
Q Consensus 9 ~G~~l~LRpD~T~~iaR~~-~~-~~~~~~~p~k~~y~g~vfR~~~~~~----gr~ref~Q~g~eiig~~~~~~d~Evi~l 82 (373)
.|-++.-++|+-+.-.-+- ++ -+..++.|.+.+|+.|.-|...... .|...++|.-+= =.+++ ..+-.+
T Consensus 41 qGC~i~QPyD~EvGAGT~hPaTfLRalGpePw~~AYVqPsRRP~DGRYGeNPNRLq~yyQfQVi--lKPsP---~niQeL 115 (311)
T 3rf1_A 41 QGCAIMQPYDMPAGAGTFHPATFLRSLGKKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVL--IKPSP---DNIQEL 115 (311)
T ss_dssp TTCEECCCCSSCCSSGGGSHHHHTTTSSSSCEEEEEEEEEECGGGCCTTCCSSCCSEEEEEEEE--EESCC---TTHHHH
T ss_pred CCCEEECCccccccCCCCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCCCchhhhhheeeEEE--EcCCC---ccHHHH
Confidence 5667777777654311110 00 0112478999999999999654333 245577887653 34454 346678
Q ss_pred HHHHHHHCCCC
Q psy17090 83 CSRLWKNLNLK 93 (373)
Q Consensus 83 ~~~~l~~lg~~ 93 (373)
-+++|+.+|++
T Consensus 116 YL~SL~alGId 126 (311)
T 3rf1_A 116 YLKSLENLGFD 126 (311)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhCCC
Confidence 89999999983
No 121
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=32.41 E-value=32 Score=26.22 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=19.3
Q ss_pred cCHHHHHHHHHHcCCCEEEEEc
Q psy17090 305 ESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 305 ~sl~~~~~~a~~~gi~~~vivg 326 (373)
.+.++++.+|+++|++|.|.-.
T Consensus 67 ~skE~AiayAek~G~~y~V~ep 88 (108)
T 2lju_A 67 TTRELAIAYAVAHKIDYTVLQD 88 (108)
T ss_dssp SSHHHHHHHHHHTTCEEEEECS
T ss_pred CCHHHHHHHHHHcCCEEEEecC
Confidence 4789999999999999998853
No 122
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=32.33 E-value=1e+02 Score=30.13 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=43.4
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEE
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFA 322 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~ 322 (373)
...|+|++-..+.-.+++-+|+.|+..|++|.+.+...........+++.+++.|++..
T Consensus 52 ~~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 110 (502)
T 3rss_A 52 DYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVV 110 (502)
T ss_dssp TCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEECCCCCHHHHHHHHHHHhCCCcee
Confidence 35678777656677899999999999999999887541111234566788899998865
No 123
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=32.06 E-value=1.7e+02 Score=22.36 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=7.9
Q ss_pred HHHHHHHcCCCEEEEE
Q psy17090 310 QMKRANASNANFAAII 325 (373)
Q Consensus 310 ~~~~a~~~gi~~~viv 325 (373)
.++.+.-.++..+|+.
T Consensus 63 ~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 63 IMQLAHLECAKWLILT 78 (140)
T ss_dssp HHHHTTGGGCSEEEEC
T ss_pred HHHhcCcccCCEEEEE
Confidence 3444444455555543
No 124
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=31.63 E-value=25 Score=35.12 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=21.7
Q ss_pred hhHHhhcCCCCCeeeeechHHHHHHHHHhh
Q psy17090 226 FLIKKFSNKFVPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 226 ~L~~~f~~~~~pavGfai~le~l~~~l~~~ 255 (373)
.++..+.--..|.-||++|+|||+.++...
T Consensus 510 ~~L~al~yG~PPhgG~glGlDRLvMll~g~ 539 (580)
T 1l0w_A 510 FFLEALEYGAPPHGGIAWGLDRLLALMTGS 539 (580)
T ss_dssp HHHHHTTBTCCCEEEEEEEHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCceEEEcHHHHHHHHcCC
Confidence 445444311358999999999999999775
No 125
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=31.44 E-value=1.5e+02 Score=25.83 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=40.2
Q ss_pred EEEEEcCch---hHH-HHHHHHHHHHHc--CCeEEEEecc-----------CccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 267 IYIVHVGKE---AEL-KAFVLSENLRTL--GLKVILNCVF-----------NNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 267 v~v~~~~~~---~~~-~~~~la~~Lr~~--Gi~v~~~~~~-----------~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
+++++.|.. ... ....+++.+++. +..|...+.+ +....++.+.++.+...|+..++++-
T Consensus 5 illv~hGSr~~~~~~~~~~~~~~~v~~~~p~~~V~~af~s~~i~~~l~~~~g~~~psi~~aL~~l~~~G~~~vvV~P 81 (264)
T 2xwp_A 5 LLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQS 81 (264)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHCCCCCCHHHHHHHHHHHTCCEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCCEEEEEe
Confidence 566666642 222 334577777765 6777777631 11237899999999999999988875
No 126
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=31.17 E-value=1.8e+02 Score=22.32 Aligned_cols=67 Identities=7% Similarity=-0.034 Sum_probs=37.2
Q ss_pred HHHHHcCCeEEEEeccCccccCHHHHHHHH---HHcCCCEEEEEccCcccCCeEEEEECCCCCCCCCccceeecHHHHHH
Q psy17090 285 ENLRTLGLKVILNCVFNNIHESFKSQMKRA---NASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAEN 361 (373)
Q Consensus 285 ~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a---~~~gi~~~vivg~~e~~~~~v~Vk~l~~~~~~~~~~~~~v~~~el~~ 361 (373)
+.+...|+...+..+. ..+.+.+... .-.++|.+++++.+ |++.-+. .+ ..+.+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~P~~~lid~~----G~i~~~~--~g---------~~~~~~l~~ 144 (165)
T 3or5_A 84 NYMKTQGIIYPVMMAT----PELIRAFNGYIDGGITGIPTSFVIDAS----GNVSGVI--VG---------PRSKADFDR 144 (165)
T ss_dssp HHHHHHTCCSCEEECC----HHHHHHHHTTSTTCSCSSSEEEEECTT----SBEEEEE--CS---------CCCHHHHHH
T ss_pred HHHHHcCCCCceEecC----HHHHHHHhhhhccCCCCCCeEEEECCC----CcEEEEE--cC---------CCCHHHHHH
Confidence 3344556655555444 3333333211 35689999999764 6654333 33 235677888
Q ss_pred HHHHHHHhh
Q psy17090 362 YFYKKIIKN 370 (373)
Q Consensus 362 ~l~~~~~~~ 370 (373)
.|.+.+.+.
T Consensus 145 ~l~~~l~~~ 153 (165)
T 3or5_A 145 IVKMALGAK 153 (165)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHhhh
Confidence 887776543
No 127
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=30.83 E-value=85 Score=23.85 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=58.6
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCcccCCeE--EEEE--
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTL--IIKD-- 339 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e~~~~~v--~Vk~-- 339 (373)
..|+.|+..| .....+.+.++.|+++|+++.+..-. ..++-..+.+..+- .+.+.++++-++- .|.+ .|+.
T Consensus 13 g~dv~iv~~G-s~~~~a~eA~~~L~~~Gi~v~vi~~r-~~~P~d~~~l~~~~-~~~~~vvvvE~~~--~G~l~~~i~~~~ 87 (118)
T 3ju3_A 13 EADITFVTWG-SQKGPILDVIEDLKEEGISANLLYLK-MFSPFPTEFVKNVL-SSANLVIDVESNY--TAQAAQMIKLYT 87 (118)
T ss_dssp SCSEEEEEEG-GGHHHHHHHHHHHHHTTCCEEEEEEC-SSCSCCHHHHHHHH-TTCSCCCCCCCCC--CCCHHHHHHHHH
T ss_pred CCCEEEEEEC-ccHHHHHHHHHHHHHCCCceEEEEEC-eEecCCHHHHHHHH-cCCCEEEEEECCC--CCcHHHHHHHHc
Confidence 3578888776 45677888999999999998776431 01122244444443 5777788885532 1211 0110
Q ss_pred -CCCCCCCCCccceeecHHHHHHHHHHHHH
Q psy17090 340 -LRNKYEDPTLKQISISFKDAENYFYKKII 368 (373)
Q Consensus 340 -l~~~~~~~~~~~~~v~~~el~~~l~~~~~ 368 (373)
...-..........++.+|+.+.+.+.+.
T Consensus 88 ~~~~~~~i~~~~G~~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 88 GIDIKNKILKYNGRHMTEDEILKSAKEILN 117 (118)
T ss_dssp CCCCCCCCCCBTTBCCCHHHHHHHHHHHHH
T ss_pred CCCceeEEeeeCCeeCCHHHHHHHHHHHhh
Confidence 00000112235678899999999887764
No 128
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=30.70 E-value=1.9e+02 Score=23.22 Aligned_cols=72 Identities=13% Similarity=-0.007 Sum_probs=42.1
Q ss_pred eeechHHHHHHHHHhhcCCCCCCCCceEEEEEc-CchhHHHHHHHHHHHHHcCC-eEEEEeccCccccCHHHHHHHHHHc
Q psy17090 240 GFAIGIERLIELIKKININHNFSHQCDIYIVHV-GKEAELKAFVLSENLRTLGL-KVILNCVFNNIHESFKSQMKRANAS 317 (373)
Q Consensus 240 Gfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~-~~~~~~~~~~la~~Lr~~Gi-~v~~~~~~~~~~~sl~~~~~~a~~~ 317 (373)
|.....+.+++.+.+.+ ++++.++. .........++++.|++.|. .+.+...+ .-+......+++.
T Consensus 53 G~~~p~e~lv~aa~~~~--------~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG----~~~~~~~~~l~~~ 120 (161)
T 2yxb_A 53 GLRQTPEQVAMAAVQED--------VDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLGG----TIPIPDLEPLRSL 120 (161)
T ss_dssp CSBCCHHHHHHHHHHTT--------CSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEEE----CCCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhcC--------CCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEeC----CCchhcHHHHHHC
Confidence 44456667766666543 44444443 34456667778888888775 34444444 3444455567778
Q ss_pred CCCEEE
Q psy17090 318 NANFAA 323 (373)
Q Consensus 318 gi~~~v 323 (373)
|+..++
T Consensus 121 G~d~v~ 126 (161)
T 2yxb_A 121 GIREIF 126 (161)
T ss_dssp TCCEEE
T ss_pred CCcEEE
Confidence 887443
No 129
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=30.25 E-value=94 Score=31.89 Aligned_cols=81 Identities=14% Similarity=0.268 Sum_probs=50.9
Q ss_pred eeechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHH-HHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcC
Q psy17090 240 GFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAF-VLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASN 318 (373)
Q Consensus 240 Gfai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~-~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~g 318 (373)
.++-+++.|-..+....... ..+..|++...+.+.-.-.. -++..|+..|+.|...-.. .+.++..+.|.+.+
T Consensus 574 ~~~~~fe~Lr~~~~~~~~~~--g~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~----v~~eeiv~aA~e~~ 647 (727)
T 1req_A 574 KNTPEVEEARELVEEFEQAE--GRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLF----QTPEETARQAVEAD 647 (727)
T ss_dssp CSCHHHHHHHHHHHHHHHHH--SSCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTT----BCHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHHhc--CCCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCC----CCHHHHHHHHHHcC
Confidence 45556777765554321000 12456788777755322222 3456788999999554344 68888899999998
Q ss_pred CCEEEEEc
Q psy17090 319 ANFAAIIG 326 (373)
Q Consensus 319 i~~~vivg 326 (373)
.+.+.+-+
T Consensus 648 adiVglSs 655 (727)
T 1req_A 648 VHVVGVSS 655 (727)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEee
Confidence 88877765
No 130
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=30.07 E-value=38 Score=27.16 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=38.3
Q ss_pred CCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEE
Q psy17090 263 HQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAI 324 (373)
Q Consensus 263 ~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vi 324 (373)
..+||+|.+.+.+....+..++..|...|+++-++..+-.....+...+..|-+ .+..+|+
T Consensus 19 ~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~-~s~~~i~ 79 (154)
T 3h16_A 19 PPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLG-SSRFGIV 79 (154)
T ss_dssp CSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHT-SEEEEEE
T ss_pred CCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHH-hCcEEEE
Confidence 458999987766532346789999999999997764310011566666665543 3444443
No 131
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=30.05 E-value=1.5e+02 Score=22.80 Aligned_cols=54 Identities=19% Similarity=0.056 Sum_probs=36.6
Q ss_pred HHHHHHcCCeEEEE-eccCccccCHHHHHHHHHHcCCCEEEEEcc--CcccCCeEEEEEC
Q psy17090 284 SENLRTLGLKVILN-CVFNNIHESFKSQMKRANASNANFAAIIGE--NEIINNTLIIKDL 340 (373)
Q Consensus 284 a~~Lr~~Gi~v~~~-~~~~~~~~sl~~~~~~a~~~gi~~~vivg~--~e~~~~~v~Vk~l 340 (373)
.+.+...|.+..+. .++. ..+.+..+.|+..|+++.+|.+. -|...|+.+|--+
T Consensus 47 ~~~W~~~g~~Kvvlk~~~e---~el~~l~~~a~~~gl~~~~i~DAG~Tei~~gt~Tvlai 103 (121)
T 1wn2_A 47 FEAWFREGQKKVVVKVESE---EELFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAV 103 (121)
T ss_dssp HHHHHHTTCCEEEEEESSH---HHHHHHHHHHHHTTCCEEEEECTTCTTSCTTCEEEEEE
T ss_pred HHHHHHCCCcEEEEecCCH---HHHHHHHHHHHHCCCCEEEEEcCCccccCCCCEEEEEe
Confidence 34445668765543 3221 46777888899999999888764 5666788877655
No 132
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=29.55 E-value=1.5e+02 Score=22.12 Aligned_cols=60 Identities=8% Similarity=-0.005 Sum_probs=38.0
Q ss_pred ceEEEEEcC--chhHHHHHHHHHHHHHcCCeEEEEeccCc---ccc----CHHHHHHHHHHcCCCEEEEE
Q psy17090 265 CDIYIVHVG--KEAELKAFVLSENLRTLGLKVILNCVFNN---IHE----SFKSQMKRANASNANFAAII 325 (373)
Q Consensus 265 ~~v~v~~~~--~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~---~~~----sl~~~~~~a~~~gi~~~viv 325 (373)
.++.|+|.+ ++......++.+.|++.|++..+..-+-. .+. -+++..+.+.+ |++.++.+
T Consensus 5 ve~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IEGe~devm~vv~~~~e~~~~-g~~RV~t~ 73 (104)
T 2ibo_A 5 IALQVLPLVQGIDRIAVIDQVIAYLQTQEVTMVVTPFETVLEGEFDELMRILKEALEVAGQ-EADNVFAN 73 (104)
T ss_dssp EEEEEEECSCSHHHHHHHHHHHHHHHHSSSEEEECSSCEEEEEEHHHHHHHHHHHHHHHHT-SCSCEEEE
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEEcCHHHHHHHHHHHHHHHHc-CCCEEEEE
Confidence 467788887 34556677888889999999877653200 011 12444555666 88877664
No 133
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=29.25 E-value=1.3e+02 Score=24.78 Aligned_cols=52 Identities=23% Similarity=0.172 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHc-CCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 276 AELKAFVLSENLRTL-GLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~-Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
.+.-+.++.+.|.+. |+.|.+.-+++ ...++.+..+.|++.+++.+|-|--+
T Consensus 30 ~l~ia~~l~~~L~~~~G~~V~ltR~~D-~~~~L~~R~~~an~~~adlfiSiH~N 82 (179)
T 1jwq_A 30 NLAMALKVESILKQNPKLEVVLTRSDD-TFLELKQRVKVAENLKANVFVSIHAN 82 (179)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEESCSSS-CCCCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCC-CCCCHHHHHHHHHhhCCCEEEEEccC
Confidence 356678889999999 99997654321 23689999999999999999988544
No 134
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=29.10 E-value=1.4e+02 Score=22.70 Aligned_cols=54 Identities=9% Similarity=-0.007 Sum_probs=37.2
Q ss_pred HHHHHHcCCeEEEEe-ccCccccCHHHHHHHHHHcCCCEEEEEcc--CcccCCeEEEEEC
Q psy17090 284 SENLRTLGLKVILNC-VFNNIHESFKSQMKRANASNANFAAIIGE--NEIINNTLIIKDL 340 (373)
Q Consensus 284 a~~Lr~~Gi~v~~~~-~~~~~~~sl~~~~~~a~~~gi~~~vivg~--~e~~~~~v~Vk~l 340 (373)
.+.+...|.+..+.- ++. ..+.+..+.|+..|+++.+|.+. -|...|+.+|--+
T Consensus 43 ~~~W~~~g~~kiVlk~~~e---~~l~~l~~~a~~~gl~~~~v~DAG~Tei~~gt~Tvlai 99 (117)
T 1rlk_A 43 FNEWYDEGQRKIVVKVNDL---DEIMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGL 99 (117)
T ss_dssp HHHHHHTTCCEEEEEESSH---HHHHHHHHHHHHHTCCEEEEECCCSSSSSCCCEEEEEE
T ss_pred HHHHHHCCCeEEEEecCCH---HHHHHHHHHHHHCCCCEEEEEeCCccCcCCCCEEEEEe
Confidence 344555687665443 221 46777888899999999888765 5667788887665
No 135
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=29.01 E-value=37 Score=25.74 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=18.0
Q ss_pred cCHHHHHHHHHHcCCCEEEEE
Q psy17090 305 ESFKSQMKRANASNANFAAII 325 (373)
Q Consensus 305 ~sl~~~~~~a~~~gi~~~viv 325 (373)
.+.++++.+|+++|++|.|.-
T Consensus 59 ~skE~AiayAek~G~~y~V~e 79 (106)
T 2jya_A 59 ETQEQAEAYAQRKGIEYRVIL 79 (106)
T ss_dssp SSHHHHHHHHHHHTCEEEECC
T ss_pred CCHHHHHHHHHHcCCEEEEeC
Confidence 478899999999999998774
No 136
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=28.77 E-value=95 Score=30.60 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=47.1
Q ss_pred HHHhCCCc-EEEecCCCCCCCCccceEEEEEeCCC---C------Cc-cceeccCccc-hhHHhhcCCCCCeeeeechHH
Q psy17090 179 ILNYNNIS-YKINTKLVRGMDYYNRTVFEWTTDKL---G------SQ-NSICGGGRYD-FLIKKFSNKFVPASGFAIGIE 246 (373)
Q Consensus 179 ~l~~~g~~-i~~D~~~~r~~~YYtG~vFe~~~~~~---g------~~-~~ia~GGRYD-~L~~~f~~~~~pavGfai~le 246 (373)
+++.+|+. +.|-++.-+.-.|+-|.-.+++.... | .. ..|+.=|.++ .++..|+ -+.|+..|.+++|
T Consensus 253 LL~~LGi~~~r~~~~~~~~~~yhPgt~aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~g-i~~~v~afeLgLE 331 (534)
T 2du3_A 253 LLRQFGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYD-IPYPVMNLGLGVE 331 (534)
T ss_dssp HHGGGTCCEEEEEECTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTT-CCSCEEEEEEEHH
T ss_pred HHHHcCCCeEEEEECCCCcccccCCeEEEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcC-CCCcEEEEEecHH
Confidence 34556774 77766533211255566677765200 0 11 4788889997 5667776 4578889999999
Q ss_pred HHHHHHH
Q psy17090 247 RLIELIK 253 (373)
Q Consensus 247 ~l~~~l~ 253 (373)
||+.++.
T Consensus 332 rLaMl~~ 338 (534)
T 2du3_A 332 RLAMILY 338 (534)
T ss_dssp HHHHHHT
T ss_pred HHHHhhc
Confidence 9987653
No 137
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=28.74 E-value=91 Score=27.63 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=47.4
Q ss_pred CCceEeecCCChH-----HHHHHHHHhcCCCCCCeeEEEeeceeecCCCCC----CCCcceeeeEEEEEcCCCchhhHHH
Q psy17090 9 NGDNLSLRPEGTA-----SVIRSVIENNLIYDGPKRLWYSGPMFRHERPQY----GRYRQFYQIGVEAIGFPGPDIDAEL 79 (373)
Q Consensus 9 ~G~~l~LRpD~T~-----~iaR~~~~~~~~~~~p~k~~y~g~vfR~~~~~~----gr~ref~Q~g~eiig~~~~~~d~Ev 79 (373)
.|-++.-++|+-+ .-+-++. ..++.|.+..|+.|.-|...... .|...++|.-+=+ .+++ ..+
T Consensus 29 ~GC~i~QpyD~EvGAGT~~PaTfLR---aLGpepw~~AYVqPsRRP~DGRYGeNPNRLq~y~QfQVil--KPsP---~ni 100 (298)
T 1j5w_A 29 KGCLLEQPYDMEVGAGTFHPATFFG---SLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVII--KPSP---ENS 100 (298)
T ss_dssp TTCEECCCCSSCCSSGGGSHHHHTG---GGCSSCEEEEEEEEEECCC-----CCTTCCSEEEEEEEEE--ESCC---SSH
T ss_pred CCCEEEcCcccccccccCCHHHHHH---hcCCCcceeeeeccCCCCCCCCcCCCchhhhhheeeEEEE--CCCC---ccH
Confidence 4666777777642 2222211 12468999999999998643332 3556778876533 4444 346
Q ss_pred HHHHHHHHHHCCC
Q psy17090 80 IIMCSRLWKNLNL 92 (373)
Q Consensus 80 i~l~~~~l~~lg~ 92 (373)
-.+-+++|+.+|+
T Consensus 101 QeLYL~SL~alGi 113 (298)
T 1j5w_A 101 QELYLESLEYLGI 113 (298)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC
Confidence 6788999999998
No 138
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=27.76 E-value=36 Score=33.53 Aligned_cols=20 Identities=25% Similarity=0.689 Sum_probs=17.6
Q ss_pred CCeeeeechHHHHHHHHHhh
Q psy17090 236 VPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 236 ~pavGfai~le~l~~~l~~~ 255 (373)
.|..||++|+|||+.++...
T Consensus 474 PP~gG~GlGiDRLvMlltg~ 493 (521)
T 3bju_A 474 PPTAGWGMGIDRVAMFLTDS 493 (521)
T ss_dssp CSEEEEEEEHHHHHHHHTTC
T ss_pred CCceeEEEcHHHHHHHHhCC
Confidence 58999999999999999764
No 139
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=27.52 E-value=1.8e+02 Score=25.24 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=40.3
Q ss_pred eEEEEEcCc---hhHHHHHHHHHHHHHc--CCeEEEEecc----------CccccCHHHHHHHHHHcCCCEEEEEcc
Q psy17090 266 DIYIVHVGK---EAELKAFVLSENLRTL--GLKVILNCVF----------NNIHESFKSQMKRANASNANFAAIIGE 327 (373)
Q Consensus 266 ~v~v~~~~~---~~~~~~~~la~~Lr~~--Gi~v~~~~~~----------~~~~~sl~~~~~~a~~~gi~~~vivg~ 327 (373)
-+++++.|. ........+++.|++. +..|...+.. +...+++.+.++.....|+..++++-=
T Consensus 11 aillv~hGS~~~~~~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV~Pl 87 (269)
T 2xvy_A 11 GILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAVQSL 87 (269)
T ss_dssp EEEEEECCCCCTTTTHHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEEEec
Confidence 456666663 2233455667777765 4566665432 012378999999999999999888753
No 140
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=27.31 E-value=1.2e+02 Score=31.34 Aligned_cols=81 Identities=12% Similarity=0.217 Sum_probs=51.3
Q ss_pred eechHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHH-HHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCC
Q psy17090 241 FAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKA-FVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNA 319 (373)
Q Consensus 241 fai~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~-~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi 319 (373)
.+-.++.+...+....... ..+..|++...+.+.-.-. .-++..|+..|+.|...-.. .+.++..+.|.+.+.
T Consensus 583 ~~~~fe~lr~~~~~~~~~~--g~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~----v~~eeiv~aA~e~~a 656 (762)
T 2xij_A 583 ESKEITSAIKRVHKFMERE--GRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLF----QTPREVAQQAVDADV 656 (762)
T ss_dssp SCHHHHHHHHHHHHHHHHH--SSCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTT----CCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhc--CCCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCC----CCHHHHHHHHHHcCC
Confidence 4456677766665421000 1245677877776432222 23456788999999654344 688899999999998
Q ss_pred CEEEEEcc
Q psy17090 320 NFAAIIGE 327 (373)
Q Consensus 320 ~~~vivg~ 327 (373)
+.+.+-+-
T Consensus 657 diVglSsl 664 (762)
T 2xij_A 657 HAVGVSTL 664 (762)
T ss_dssp SEEEEEEC
T ss_pred CEEEEeee
Confidence 88887653
No 141
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=26.73 E-value=90 Score=24.45 Aligned_cols=51 Identities=10% Similarity=-0.117 Sum_probs=34.0
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCE
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANF 321 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~ 321 (373)
++|+.|+.... ..+.++++++-+.|++..+...+ ..-.+..+.|++.|+.+
T Consensus 70 ~vDlavi~vp~---~~~~~v~~~~~~~gi~~i~~~~g----~~~~~~~~~a~~~Gir~ 120 (140)
T 1iuk_A 70 PVDILDVFRPP---SALMDHLPEVLALRPGLVWLQSG----IRHPEFEKALKEAGIPV 120 (140)
T ss_dssp CCSEEEECSCH---HHHTTTHHHHHHHCCSCEEECTT----CCCHHHHHHHHHTTCCE
T ss_pred CCCEEEEEeCH---HHHHHHHHHHHHcCCCEEEEcCC----cCHHHHHHHHHHcCCEE
Confidence 46777776654 34446666777788887665554 33466778888888874
No 142
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=26.39 E-value=2.2e+02 Score=25.72 Aligned_cols=80 Identities=10% Similarity=0.175 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCceEEEEEcC--chhHHHHHHHHHHHHHcCCeEEEEecc-CccccCHHHHHHHHHHcCCCE
Q psy17090 245 IERLIELIKKININHNFSHQCDIYIVHVG--KEAELKAFVLSENLRTLGLKVILNCVF-NNIHESFKSQMKRANASNANF 321 (373)
Q Consensus 245 le~l~~~l~~~~~~~~~~~~~~v~v~~~~--~~~~~~~~~la~~Lr~~Gi~v~~~~~~-~~~~~sl~~~~~~a~~~gi~~ 321 (373)
.++|.+.+...... .++.+-+..+ .......+.++..++..|+.+..-..+ +++...+...+..+...||..
T Consensus 28 ~~~l~~~~~~L~~~-----~pd~vsVT~~~~g~~r~~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~n 102 (310)
T 3apt_A 28 EEALFRTLEELKAF-----RPAFVSITYGAMGSTRERSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVEN 102 (310)
T ss_dssp HHHHHHHHHHHGGG-----CCSEEEECCCSTTCSHHHHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHhcC-----CCCEEEEecCCCCCcchhHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCE
Confidence 45555555443221 1333334443 233455778899999889987666554 234456677788899999999
Q ss_pred EEEEccCc
Q psy17090 322 AAIIGENE 329 (373)
Q Consensus 322 ~vivg~~e 329 (373)
++.+..+-
T Consensus 103 iLaLrGD~ 110 (310)
T 3apt_A 103 LLALRGDP 110 (310)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99998764
No 143
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=26.33 E-value=1.3e+02 Score=24.16 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=19.2
Q ss_pred HHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEE
Q psy17090 283 LSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAI 324 (373)
Q Consensus 283 la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vi 324 (373)
++..|+..|+.|...-.. .+.++..+.+.+.+.+.+.+
T Consensus 38 va~~l~~~G~eVi~lG~~----~p~e~lv~aa~~~~~diV~l 75 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGLR----QTPEQVAMAAVQEDVDVIGV 75 (161)
T ss_dssp HHHHHHHTTCEEECCCSB----CCHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHCCCEEEECCCC----CCHHHHHHHHHhcCCCEEEE
Confidence 344556666665433322 45555555555555554444
No 144
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=25.86 E-value=1.7e+02 Score=24.25 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=44.7
Q ss_pred CCCceEEEEEcCchhH-----HHHHHHHHHHHHcCCeEEEE---eccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 262 SHQCDIYIVHVGKEAE-----LKAFVLSENLRTLGLKVILN---CVFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 262 ~~~~~v~v~~~~~~~~-----~~~~~la~~Lr~~Gi~v~~~---~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
.++..|.|++.+.+.. .....+++.|++.|+.+... .++ ...+.+.++.|-..+++.+|+.|.-
T Consensus 28 ~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd---~~~I~~al~~a~~~~~DlVIttGGt 99 (185)
T 3rfq_A 28 LVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD---EVDIRNALNTAVIGGVDLVVSVGGT 99 (185)
T ss_dssp -CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC---HHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC---HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4567788888875432 25678899999999876543 222 2567778887765789999998753
No 145
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=24.38 E-value=1.6e+02 Score=22.83 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEE
Q psy17090 282 VLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAII 325 (373)
Q Consensus 282 ~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~viv 325 (373)
-++..|+.+|+.|...-.. .+.++..+.|.+.+.+.+.+-
T Consensus 22 ~v~~~l~~~G~~Vi~lG~~----~p~e~~v~~a~~~~~d~v~lS 61 (137)
T 1ccw_A 22 ILDHAFTNAGFNVVNIGVL----SPQELFIKAAIETKADAILVS 61 (137)
T ss_dssp HHHHHHHHTTCEEEEEEEE----ECHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHCCCEEEECCCC----CCHHHHHHHHHhcCCCEEEEE
Confidence 3445566667766533333 566666666666666655554
No 146
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=22.87 E-value=1.6e+02 Score=27.14 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhhcCCCCCCCCceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHH-HHHcCCCEE
Q psy17090 244 GIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR-ANASNANFA 322 (373)
Q Consensus 244 ~le~l~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~-a~~~gi~~~ 322 (373)
..+++...|.+.+. ... ++++.++.......++++.+++.|..+.+-..+ -|..+.-+. |-..|+|++
T Consensus 46 ~~~~v~~~L~~~g~------~~~-~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG----Gsv~D~aK~iA~~~~~p~i 114 (370)
T 1jq5_A 46 AGHTIVNELKKGNI------AAE-EVVFSGEASRNEVERIANIARKAEAAIVIGVGG----GKTLDTAKAVADELDAYIV 114 (370)
T ss_dssp THHHHHHHHHTTTC------EEE-EEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES----HHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHcCC------eEE-EEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC----hHHHHHHHHHHHhcCCCEE
Confidence 35666666655442 121 233334434456678888999999988888765 343333222 234699999
Q ss_pred EEEcc
Q psy17090 323 AIIGE 327 (373)
Q Consensus 323 vivg~ 327 (373)
.|..-
T Consensus 115 ~IPTT 119 (370)
T 1jq5_A 115 IVPTA 119 (370)
T ss_dssp EEESS
T ss_pred Eeccc
Confidence 99763
No 147
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=22.82 E-value=2.8e+02 Score=24.10 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=21.8
Q ss_pred cceeccCccchhHHhhcCCCCCeeeeechHHHHHHHH
Q psy17090 216 NSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELI 252 (373)
Q Consensus 216 ~~ia~GGRYD~L~~~f~~~~~pavGfai~le~l~~~l 252 (373)
-.|..+|.++.++..+-....--||.--|.+++.+++
T Consensus 24 ~lIv~ng~~~~~~~~~~~~~~~~i~aDgGa~~l~~~~ 60 (247)
T 3s4y_A 24 CLVILNQPLDNYFRHLWNKALLRACADGGANRLYDIT 60 (247)
T ss_dssp EEEECSSCCCTTHHHHHHHCSCEEEETTHHHHHHHHT
T ss_pred EEEEECCcchHHHHHHHhhCCEEEEEchHHHHHHHhc
Confidence 3566677777655544322222466667888887754
No 148
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=22.80 E-value=1.5e+02 Score=27.15 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHcCCeE--EEEeccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 276 AELKAFVLSENLRTLGLKV--ILNCVFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~Gi~v--~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
.+.-+.++.+.|.+.|+.| .+..+++-...++.+..+.|++.+++.+|-|--+
T Consensus 39 ~L~iA~~l~~~L~~~G~~V~V~m~tR~~D~~~~L~~R~~~An~~~ADlfISIH~N 93 (326)
T 1xov_A 39 AEKVLNAASDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHLN 93 (326)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecCCCCccCCHHHHHHHHHhcCCCEEEEEecc
Confidence 3566788889999999995 3243331122467888999999999999988543
No 149
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=22.23 E-value=35 Score=27.02 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=27.1
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEecc
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
.++++|+..|.....---++.+.|+++||.++++...
T Consensus 67 ~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 67 AIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp SCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 4789999888543212236678899999999998764
No 150
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=22.18 E-value=2.5e+02 Score=21.02 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=36.6
Q ss_pred ceEEEEEcC--chhHHHHHHHHHHHHHcCCeEEEEeccCccccCH-------HHHHHHHHHcCCCEEEEE
Q psy17090 265 CDIYIVHVG--KEAELKAFVLSENLRTLGLKVILNCVFNNIHESF-------KSQMKRANASNANFAAII 325 (373)
Q Consensus 265 ~~v~v~~~~--~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl-------~~~~~~a~~~gi~~~viv 325 (373)
.++.|+|.+ ++......++.+.|++.|++..+..-+-..--.. ++..+.+. .|++.+..+
T Consensus 18 v~~sv~Plg~~~svs~~Va~~i~vi~~sGL~y~~~pmgT~IEGe~devm~vvk~~~e~~~-~g~~RV~t~ 86 (106)
T 1vk8_A 18 VSIKVVPAVEDGRLHEVIDRAIEKISSWGMKYEVGPSNTTVEGEFEEIMDRVKELARYLE-QFAKRFVLQ 86 (106)
T ss_dssp EEEEEEESSCGGGHHHHHHHHHHHHHTTCSCEEECSSCEEEEECHHHHHHHHHHHHHHHT-TTCSEEEEE
T ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHcCCCeEeCCCccEEEcCHHHHHHHHHHHHHHHH-cCCCEEEEE
Confidence 567788887 3445566677788899999987765320000122 33334444 788777664
No 151
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=22.09 E-value=2.1e+02 Score=24.61 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHcC-CeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEccCc
Q psy17090 276 AELKAFVLSENLRTLG-LKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENE 329 (373)
Q Consensus 276 ~~~~~~~la~~Lr~~G-i~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~e 329 (373)
.+.-+..+.+.|.+.| +.|.+.-+++ ...++.+..+.|++.++..+|-|--+-
T Consensus 32 ~l~ia~~l~~~L~~~g~~~V~~tR~~D-~~~~l~~R~~~An~~~adlfiSiH~Na 85 (234)
T 3ne8_A 32 TLAFARALRDELQKGSHTIVALTRDSD-IFLRLSERVKKAQEFDADLFISIHADT 85 (234)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEESCSSS-CCCCHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCC-CcCCHHHHHHHHHhhCCCEEEEEecCC
Confidence 3566778889999998 8887653321 236799999999999999999987653
No 152
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=21.92 E-value=3e+02 Score=22.22 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=43.0
Q ss_pred CceEEEEEcCch----hHHHHHHHHHHHHHcCCeEEEEe--ccCccccCHHHHHHHHHHc-CCCEEEEEccC
Q psy17090 264 QCDIYIVHVGKE----AELKAFVLSENLRTLGLKVILNC--VFNNIHESFKSQMKRANAS-NANFAAIIGEN 328 (373)
Q Consensus 264 ~~~v~v~~~~~~----~~~~~~~la~~Lr~~Gi~v~~~~--~~~~~~~sl~~~~~~a~~~-gi~~~vivg~~ 328 (373)
+..|.|++.+.+ .-..+.-+++.|++.|+.+.... .+ ....+.+.++.|... +++.+|+.|.-
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKE--NRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 456778877642 22345678999999999875431 22 125677888888776 79999998753
No 153
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=21.64 E-value=3.3e+02 Score=22.92 Aligned_cols=56 Identities=7% Similarity=-0.073 Sum_probs=39.6
Q ss_pred CceEEEEEcCchh--HHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEE
Q psy17090 264 QCDIYIVHVGKEA--ELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAI 324 (373)
Q Consensus 264 ~~~v~v~~~~~~~--~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vi 324 (373)
...|++...+.+. +. ..-++..|+.+|+.|...-.+ .+.++..+.|.+.+.+.+.+
T Consensus 92 ~~~vll~~v~gd~HdiG-~~iv~~~l~~~G~~Vi~LG~~----vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIG-HRLVTTMLGANGFQIVDLGVD----VLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CCEEEEEECTTCCCCHH-HHHHHHHHHHTSCEEEECCSS----CCHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEeCCCChhHHH-HHHHHHHHHHCCCeEEEcCCC----CCHHHHHHHHHHcCCCEEEE
Confidence 3556666655432 22 234567899999999654444 78899999999999988877
No 154
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=21.52 E-value=38 Score=26.48 Aligned_cols=37 Identities=14% Similarity=-0.049 Sum_probs=27.4
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEecc
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 300 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~ 300 (373)
.++++|+..|.....-.-++.+.|+++||.+++....
T Consensus 68 ~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 68 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 3789999888653222246678899999999998764
No 155
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=21.34 E-value=2.5e+02 Score=22.56 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=42.2
Q ss_pred CceEEEEEcCchhH------HHHHHHHHHHHHcCCeEEEE--eccCccccCHHHHHHHHHHcCCCEEEEEccC
Q psy17090 264 QCDIYIVHVGKEAE------LKAFVLSENLRTLGLKVILN--CVFNNIHESFKSQMKRANASNANFAAIIGEN 328 (373)
Q Consensus 264 ~~~v~v~~~~~~~~------~~~~~la~~Lr~~Gi~v~~~--~~~~~~~~sl~~~~~~a~~~gi~~~vivg~~ 328 (373)
+..|.|++.+.+.. .....+++.|++.|+.+... ..+ . ..+.++++.|-..+++.+|+.|.-
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~D--d-~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVAD--G-SPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECS--S-HHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCC--H-HHHHHHHHHHHhCCCCEEEECCCC
Confidence 45678888775322 24567889999999876422 122 1 567777887766689999998753
No 156
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=21.14 E-value=4.7e+02 Score=24.48 Aligned_cols=71 Identities=11% Similarity=0.180 Sum_probs=40.3
Q ss_pred ccchhHHhhcCCCCCeeeeechHHHHHHHHHhhcCCCCCCCCce-EEEEEcCchhHHHHHHHHHHHHHcCCeEEEEec
Q psy17090 223 RYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCD-IYIVHVGKEAELKAFVLSENLRTLGLKVILNCV 299 (373)
Q Consensus 223 RYD~L~~~f~~~~~pavGfai~le~l~~~l~~~~~~~~~~~~~~-v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~ 299 (373)
.|+..+.... ..+..|.-.+++|+..++...|.+. .... |.|... ++--..+.-++.-|+++|++|-+..+
T Consensus 15 ~~~~~l~~l~--~~~~~~~~~gL~r~~~ll~~lg~p~---~~~~vI~VtGT-NGKgSt~~~l~~iL~~~G~~vg~~tS 86 (437)
T 3nrs_A 15 PLAAWLCYLE--HLHSQPIELGLERVKQVAERLDLLK---PAPKIFTVAGT-NGKGTTCCTLEAILLAAGLRVGVYSS 86 (437)
T ss_dssp CHHHHHHHHH--TC-------CCHHHHHHHHHTTCSC---SSSEEEEEECS-SSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CHHHHHHHHH--hcCCCCCCCCHHHHHHHHHHcCCcc---ccCCEEEEECC-cChHHHHHHHHHHHHHCCCcEEEECC
Confidence 4666666554 3455677889999999998876421 1233 334433 33334445677889999999976544
No 157
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=21.12 E-value=41 Score=32.97 Aligned_cols=20 Identities=40% Similarity=0.792 Sum_probs=17.8
Q ss_pred CCeeeeechHHHHHHHHHhh
Q psy17090 236 VPASGFAIGIERLIELIKKI 255 (373)
Q Consensus 236 ~pavGfai~le~l~~~l~~~ 255 (373)
.|..||++|+|||+.++...
T Consensus 469 PPhgG~glGiDRLvmlltg~ 488 (504)
T 1e1o_A 469 PPTAGLGIGIDRMIMLFTNS 488 (504)
T ss_dssp CSEEEEEEEHHHHHHHHHTC
T ss_pred CCceeEEEcHHHHHHHHhCC
Confidence 48999999999999999774
No 158
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=21.07 E-value=1.2e+02 Score=23.41 Aligned_cols=54 Identities=22% Similarity=0.081 Sum_probs=37.4
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEE
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAI 324 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vi 324 (373)
.+++|+-.......+|-.++++|-.+|..|.+-. -|.--....|-.-++..++.
T Consensus 62 ~~l~v~etdy~L~~YA~~Lc~RL~~AG~~V~lk~------yS~tMlrSravsGkYd~fla 115 (139)
T 3noh_A 62 FDIYVSETDYALIRYADSLCERLNDAGADVQIKQ------YSGTMLRSRAVSGKYEAFLS 115 (139)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE------ECHHHHHHHHHHTCCSEEEE
T ss_pred eEEEEeccchHHHHHHHHHHHHHHhcCCCceecc------CchHHHHHHHhcCceeEEec
Confidence 4667766666678899999999999999998763 23444455555555554443
No 159
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=20.81 E-value=2.3e+02 Score=23.53 Aligned_cols=58 Identities=10% Similarity=-0.019 Sum_probs=38.4
Q ss_pred ceEEEEEcCchhHH-HHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCEEEEEc
Q psy17090 265 CDIYIVHVGKEAEL-KAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIG 326 (373)
Q Consensus 265 ~~v~v~~~~~~~~~-~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~~vivg 326 (373)
..|++.+.+.+.-. -..-++..|+.+|+.|...-.+ ...++..+.+++.+...+.+-.
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~----vp~~~l~~~~~~~~~d~v~lS~ 147 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD----IEPGKFVEAVKKYQPDIVGMSA 147 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS----BCHHHHHHHHHHHCCSEEEEEC
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCC----CCHHHHHHHHHHcCCCEEEEec
Confidence 35666555433211 1245667789999998755444 6888888888888888777654
No 160
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=20.67 E-value=2.7e+02 Score=20.87 Aligned_cols=61 Identities=10% Similarity=0.005 Sum_probs=39.2
Q ss_pred ceEEEEEcCc--hhHHHHHHHHHHHHHcCCeEEEEeccCc---cccC----HHHHHHHHHHcCCCEEEEE
Q psy17090 265 CDIYIVHVGK--EAELKAFVLSENLRTLGLKVILNCVFNN---IHES----FKSQMKRANASNANFAAII 325 (373)
Q Consensus 265 ~~v~v~~~~~--~~~~~~~~la~~Lr~~Gi~v~~~~~~~~---~~~s----l~~~~~~a~~~gi~~~viv 325 (373)
.++.|+|.+. +......++.+.|++.|++..+..-+-. .+.. +++..+.+-+.|++.+..+
T Consensus 10 ve~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IEGe~devm~vv~~~~e~~~~~G~~RV~t~ 79 (109)
T 1yqh_A 10 MSFSVVPQAKTKDVYSVVDKAIEVVQQSGVRYEVGAMETTLEGELDVLLDVVKRAQQACVDAGAEEVITS 79 (109)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHSCSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEEcCHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 5677888874 3556677888889999999877653200 0111 2344455667799887764
No 161
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=20.62 E-value=2.2e+02 Score=21.50 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=32.4
Q ss_pred HHHHHHHcCCeEEEE-eccCccccCHHHHHHHHHHcCCCEEEEEcc--CcccCCeEEEEEC
Q psy17090 283 LSENLRTLGLKVILN-CVFNNIHESFKSQMKRANASNANFAAIIGE--NEIINNTLIIKDL 340 (373)
Q Consensus 283 la~~Lr~~Gi~v~~~-~~~~~~~~sl~~~~~~a~~~gi~~~vivg~--~e~~~~~v~Vk~l 340 (373)
..+.+...|.+..+. .++. ..+.+..+.|+..|+++.++.+. -|...|+.+|--+
T Consensus 40 ~~~~W~~~g~~kivlk~~~e---~~l~~l~~~a~~~gl~~~~i~DAG~Tei~~gt~Tvlai 97 (115)
T 2zv3_A 40 AVDEWLREGQKKVVVKVNSE---KELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAI 97 (115)
T ss_dssp HHHHHHHTTCCEEEEEESSH---HHHHHHHHHHHHHTCCEEEEEECC-------EEEEEEE
T ss_pred HHHHHHHCCCeEEEEecCCH---HHHHHHHHHHHHcCCCEEEEEeCCceecCCCCEEEEEe
Confidence 344555678765544 3221 46777788888999999888654 3455677777655
No 162
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=20.52 E-value=1.5e+02 Score=23.32 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=32.3
Q ss_pred CceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCE
Q psy17090 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANF 321 (373)
Q Consensus 264 ~~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~ 321 (373)
.+|+.|+...... ..++++.+-+.|++..+...+ ..-.+..+.|++.|+.+
T Consensus 70 ~~Dlvii~vp~~~---v~~v~~~~~~~g~~~i~i~~~----~~~~~l~~~a~~~Gi~~ 120 (145)
T 2duw_A 70 KVDMVDVFRNSEA---AWGVAQEAIAIGAKTLWLQLG----VINEQAAVLAREAGLSV 120 (145)
T ss_dssp CCSEEECCSCSTH---HHHHHHHHHHHTCCEEECCTT----CCCHHHHHHHHTTTCEE
T ss_pred CCCEEEEEeCHHH---HHHHHHHHHHcCCCEEEEcCC----hHHHHHHHHHHHcCCEE
Confidence 4677777665432 335555566678887555544 34566777888888764
No 163
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=20.43 E-value=1.1e+02 Score=25.21 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=26.5
Q ss_pred CceEEEEEcCchhH-HHHHHHHHHHHHcCCeEEEEec
Q psy17090 264 QCDIYIVHVGKEAE-LKAFVLSENLRTLGLKVILNCV 299 (373)
Q Consensus 264 ~~~v~v~~~~~~~~-~~~~~la~~Lr~~Gi~v~~~~~ 299 (373)
.+||+|..-+.+.. ..+-.+...|..+|+++-++..
T Consensus 8 ~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~ 44 (176)
T 3jrn_A 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDK 44 (176)
T ss_dssp CEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC
T ss_pred CCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcc
Confidence 57998876555432 4566889999999999977644
No 164
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=20.18 E-value=1.8e+02 Score=22.19 Aligned_cols=50 Identities=6% Similarity=-0.052 Sum_probs=30.7
Q ss_pred ceEEEEEcCchhHHHHHHHHHHHHHcCCeEEEEeccCccccCHHHHHHHHHHcCCCE
Q psy17090 265 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANF 321 (373)
Q Consensus 265 ~~v~v~~~~~~~~~~~~~la~~Lr~~Gi~v~~~~~~~~~~~sl~~~~~~a~~~gi~~ 321 (373)
+|+.++..... ....+++++-+.|.++.+.-.+ -.-.+..+.|++.|+..
T Consensus 59 vDlavi~~p~~---~v~~~v~e~~~~g~k~v~~~~G----~~~~e~~~~a~~~Girv 108 (122)
T 3ff4_A 59 VDTVTLYINPQ---NQLSEYNYILSLKPKRVIFNPG----TENEELEEILSENGIEP 108 (122)
T ss_dssp CCEEEECSCHH---HHGGGHHHHHHHCCSEEEECTT----CCCHHHHHHHHHTTCEE
T ss_pred CCEEEEEeCHH---HHHHHHHHHHhcCCCEEEECCC----CChHHHHHHHHHcCCeE
Confidence 67777766543 3345556666778887443333 23356778888888863
Done!