RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17090
(373 letters)
>gnl|CDD|213530 TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a
histidyl-tRNA synthetase in every completed genome.
Apparent second copies from Bacillus subtilis,
Synechocystis sp., and Aquifex aeolicus are slightly
shorter, more closely related to each other than to
other hisS proteins, and actually serve as regulatory
subunits for an enzyme of histidine biosynthesis. They
were excluded from the seed alignment and score much
lower than do single copy histidyl-tRNA synthetases of
other genomes not included in the seed alignment. These
putative second copies of HisS score below the trusted
cutoff. The regulatory protein kinase GCN2 of
Saccharomyces cerevisiae (YDR283c), and related proteins
from other species designated eIF-2 alpha kinase, have a
domain closely related to histidyl-tRNA synthetase that
may serve to detect and respond to uncharged tRNA(his),
an indicator of amino acid starvation; these regulatory
proteins are not orthologous and so score below the
noise cutoff [Protein synthesis, tRNA aminoacylation].
Length = 397
Score = 444 bits (1145), Expect = e-156
Identities = 161/343 (46%), Positives = 225/343 (65%), Gaps = 7/343 (2%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
MY+F D+ G +L+LRPEGTA V R+VIEN L+ P +L+Y GPMFR+ERPQ GRYRQF
Sbjct: 62 MYTFKDK-GGRSLTLRPEGTAPVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQF 120
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIK 120
+Q GVE IG P DAE+I + + + K L +K+ LE+NS+G R +Y L+ Y+
Sbjct: 121 HQFGVEVIGSDSPLADAEIIALAAEILKALGIKDFTLEINSLGILEGRLEYREALLRYLD 180
Query: 121 KHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKIL 180
KH D ED L N LR+LDSKN I+E+L APK+LD+L+++S HF ++++L
Sbjct: 181 KHLDK--LGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRAHFEELKELL 238
Query: 181 NYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASG 240
+ I Y I+ LVRG+DYY TVFE+ TD LG+Q SICGGGRYD L+++ PA G
Sbjct: 239 DALGIPYVIDPSLVRGLDYYTGTVFEFVTDGLGAQGSICGGGRYDGLVEELGGPPTPAVG 298
Query: 241 FAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 300
FAIGIERL+ L++++ + D+Y+V +G+EAEL+A L++ LR G++V ++
Sbjct: 299 FAIGIERLLLLLEELGLLPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDL-- 356
Query: 301 NNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNK 343
K Q+K A+ A FA IIGE+E+ N T+ +KDLR
Sbjct: 357 --GGRKLKKQLKYADKLGARFAVIIGEDELANGTVTLKDLRTG 397
>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.
Length = 412
Score = 444 bits (1146), Expect = e-156
Identities = 158/363 (43%), Positives = 230/363 (63%), Gaps = 21/363 (5%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
MY+F D+ G +L+LRPEGTA V+R+VIE+ L P +L+Y GPMFR+ERPQ GRYRQF
Sbjct: 66 MYTFQDK-GGRSLTLRPEGTAPVVRAVIEHKL---QPFKLYYIGPMFRYERPQKGRYRQF 121
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIK 120
+Q GVE IG P DAE+I + + + K L LK + L +NS+G+F R Y L+ +++
Sbjct: 122 HQFGVEVIGSDSPLADAEVIALAADILKALGLKGLKLLINSLGDFEIRANYRKALVGFLE 181
Query: 121 KHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKIL 180
K D ED K L N LR+LD K+ +E+L +APKLLDYL+++S +HF ++++L
Sbjct: 182 KGLDE--LDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDEESKEHFEELKELL 239
Query: 181 NYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASG 240
+ I Y I+ +LVRG+DYY TVFE+ TD LG+Q ++CGGGRYD L+++F PA G
Sbjct: 240 DALGIPYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPAVG 299
Query: 241 FAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 300
FAIG+ERL+ L++++ D+Y+V +G++AEL A L+E LR G++V L+
Sbjct: 300 FAIGVERLLLLLEELGEE-----PVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGG 354
Query: 301 NNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAE 360
K Q K A+ S A F I+GE+E+ N T+ +KDLR +Q ++ +
Sbjct: 355 RK----LKKQFKYADKSGARFVLILGEDELANGTVTVKDLRTG------EQQTVPLDELV 404
Query: 361 NYF 363
Sbjct: 405 EAL 407
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 400 bits (1029), Expect = e-138
Identities = 155/370 (41%), Positives = 216/370 (58%), Gaps = 18/370 (4%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
MY+F D+ G +L+LRPE TA V R+V EN L P +L+Y GP+FR+ERPQ GRYRQF
Sbjct: 66 MYTFKDK-GGRSLALRPELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQF 124
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYC-----IDL 115
YQ GVE IG PD DAE+I + + + L + LE+NS G R +Y L
Sbjct: 125 YQFGVEVIGSDSPDADAEVIALAVEILEALGIGGFTLEINSRGILEGRLEYLGIDQREAL 184
Query: 116 INYIKKHKDSKW--FCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHF 173
+ Y+ K ED K L N LRVLDSK +E+L NAP+LLDYL+++SL+H
Sbjct: 185 LRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELLDYLDEESLEHL 244
Query: 174 YGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSN 233
+ +L+ ISY+I+ LVRG+DYY TVFE TD LG+Q S+CGGGRYD L+++F
Sbjct: 245 EELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGG 304
Query: 234 KFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLK 293
K PA GFAIG+ERLI +++ + D+Y+V +G++AE +A L++ LR G+
Sbjct: 305 KPTPAVGFAIGVERLILALEEEGKEDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGIS 364
Query: 294 VILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQIS 353
V ++ K Q K A+ A FA I+GE+E+ N + +KDL +Q
Sbjct: 365 VEVDY----SGRKLKKQFKYADKLGARFAVILGEDELANGVVTVKDLATG------EQEE 414
Query: 354 ISFKDAENYF 363
+ +
Sbjct: 415 VPLDELVEEL 424
>gnl|CDD|164576 CHL00201, syh, histidine-tRNA synthetase; Provisional.
Length = 430
Score = 287 bits (737), Expect = 3e-94
Identities = 156/372 (41%), Positives = 221/372 (59%), Gaps = 15/372 (4%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGP-KRLWYSGPMFRHERPQYGRYRQ 59
MY F D N D ++LRPEGTA ++R+ IEN + Y +RLWYSGPMFR+ERPQ GR RQ
Sbjct: 66 MYRFTDRSNRD-ITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQ 124
Query: 60 FYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYI 119
F+Q+G+E IG D E+I + +++ L +KN+ L++NSIG +R+ Y + L+ Y+
Sbjct: 125 FHQLGIEFIGSIDARADTEVIHLAMQIFNELQVKNLILDINSIGKLEDRQSYQLKLVEYL 184
Query: 120 KKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKI 179
+++D D ++ LY N +R+LDSKNL +EIL APK+ D+L +S +HFY +
Sbjct: 185 SQYQDD--LDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLESTEHFYDVCTY 242
Query: 180 LNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPAS 239
LN NI YKIN KLVRG+DYYN T FE T Q++ICGGGRYD LI + PA
Sbjct: 243 LNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAV 302
Query: 240 GFAIGIERLIELIK-KININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNC 298
G AIG+ERL+ + K I + D+YI G +A+ K + + + L +K L+
Sbjct: 303 GCAIGLERLLLIAKDNIILPK---QSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDL 359
Query: 299 VFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKD 358
+N H+ Q+K+A A I+G+NEI++N + IK L E +FK
Sbjct: 360 SSSNFHK----QIKQAGKKRAKACIILGDNEIMDNCITIKWL---DEQVQENAQYSNFKQ 412
Query: 359 AENYFYKKIIKN 370
+Y KKI N
Sbjct: 413 EISYLKKKIAFN 424
>gnl|CDD|238396 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase
(HisRS)-like catalytic core domain. HisRS is a
homodimer. It is responsible for the attachment of
histidine to the 3' OH group of ribose of the
appropriate tRNA. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. This domain is also found at the
C-terminus of eukaryotic GCN2 protein kinase and at the
N-terminus of the ATP phosphoribosyltransferase
accessory subunit, HisZ. HisZ along with HisG catalyze
the first reaction in histidine biosynthesis. HisZ is
found only in a subset of bacteria and differs from
HisRS in lacking a C-terminal anti-codon binding domain.
Length = 261
Score = 233 bits (597), Expect = 3e-75
Identities = 98/255 (38%), Positives = 136/255 (53%), Gaps = 42/255 (16%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
MY F D+ D L+LRP+ TA V R+V EN L P +L+Y GP+FR+ERPQ GRYR+F
Sbjct: 47 MYRFKDKGGRD-LALRPDLTAPVARAVAENLLSLPLPLKLYYIGPVFRYERPQKGRYREF 105
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIK 120
YQ+GVE IG P DAE+I + + + L LK+ +++N G + D YI+
Sbjct: 106 YQVGVEIIGSDSPLADAEVIALAVEILEALGLKDFQIKINHRGILDGIAGLLEDREEYIE 165
Query: 121 KHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKIL 180
+L+D L+K++L H + L
Sbjct: 166 ---------------------------------------RLIDKLDKEALAHLEKLLDYL 186
Query: 181 N--YNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPA 238
+I Y I+ LVRG+DYY VFE D LG+Q SI GGGRYD L+++F + VPA
Sbjct: 187 EALGVDIKYSIDLSLVRGLDYYTGIVFEAVADGLGAQGSIAGGGRYDGLLEEFGGEDVPA 246
Query: 239 SGFAIGIERLIELIK 253
GFAIG+ERL+ ++
Sbjct: 247 VGFAIGLERLLLALE 261
>gnl|CDD|232978 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase,
regulatory subunit. Apparant second copies of
histidyl-tRNA synthetase, found in Bacillus subtilis,
Synechocystis sp., Aquifex aeolicus, and others, are in
fact a regulatory subunit of ATP
phosphoribosyltransferase, and usually encoded by a gene
adjacent to that encoding the catalytic subunit [Amino
acid biosynthesis, Histidine family].
Length = 313
Score = 139 bits (352), Expect = 2e-38
Identities = 82/276 (29%), Positives = 124/276 (44%), Gaps = 37/276 (13%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
++ D+L G L LRP+ TA + R V P RL Y+G +FR GR R+F
Sbjct: 52 LFKLFDQL-GRVLGLRPDMTAPIARLVSTRLRDRPLPLRLCYAGNVFRTNESGGGRSREF 110
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIK 120
Q GVE IG GP DAE+I + K L LK+ +EL +G ++
Sbjct: 111 TQAGVELIGAGGPAADAEVIALLIEALKALGLKDFKIELGHVGLVRA----------LLE 160
Query: 121 KHKDSKWFCEDIKHSLY---LNSL-RVLDSKNL--IIREILINAPKL-------LDYLEK 167
+ + E ++ +L L +L ++ L +RE L+ P+L L+
Sbjct: 161 EAGLPEEAREALREALARKDLVALEELVAELGLSPEVRERLLALPRLRGDGEEVLEEARA 220
Query: 168 D--------SLDHFYGIQKILN--YNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNS 217
+LD + ++L ++ LVRG YY +FE LG
Sbjct: 221 LAGSETAEAALDELEAVLELLEARGVEEYISLDLGLVRGYHYYTGLIFEGYAPGLG--AP 278
Query: 218 ICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIK 253
+ GGGRYD L+ +F PA+GFA+ +ERL+E +
Sbjct: 279 LAGGGRYDELLGRFGRPL-PATGFALNLERLLEALT 313
>gnl|CDD|237043 PRK12292, hisZ, ATP phosphoribosyltransferase regulatory subunit;
Provisional.
Length = 391
Score = 138 bits (351), Expect = 1e-37
Identities = 94/319 (29%), Positives = 147/319 (46%), Gaps = 44/319 (13%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
+ +D+L+G L LRP+ TA + R GP RL Y+G +FR + GR R+F
Sbjct: 62 TFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRPGPLRLCYAGNVFRAQERGLGRSREF 121
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIK 120
Q GVE IG G + DAE+I++ K L L N L+L +G F L+
Sbjct: 122 LQSGVELIGDAGLEADAEVILLLLEALKALGLPNFTLDLGHVGLFRA-------LLEAAG 174
Query: 121 KHKDSKWFCEDIKHSLY---LNSLRVL------DSKNLII--------REILINAPKLLD 163
++ + E ++ +L +L L + ++ ++ RE+L A KLL
Sbjct: 175 LSEELE---EVLRRALANKDYVALEELVLDLSEELRDALLALPRLRGGREVLEEARKLLP 231
Query: 164 YLE-KDSLDHFYGIQKILN-YNNISYKINTKL----VRGMDYYNRTVFEWTTDKLGSQNS 217
L K +LD ++ + Y I L +R +DYY VFE D G N
Sbjct: 232 SLPIKRALDE---LEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVD--GVGNP 286
Query: 218 ICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAE 277
I GGRYD L+ +F + PA+GF++ ++RL+EL ++ + ++ EA
Sbjct: 287 IASGGRYDDLLGRF-GRARPATGFSLDLDRLLELQLELPVE-----ARKDLVIAPDSEAL 340
Query: 278 LKAFVLSENLRTLGLKVIL 296
A ++ LR G V+L
Sbjct: 341 AAALAAAQELRKKGEIVVL 359
>gnl|CDD|222097 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase. This is a
family of class II aminoacyl-tRNA synthetase-like and
ATP phosphoribosyltransferase regulatory subunits.
Length = 308
Score = 119 bits (300), Expect = 6e-31
Identities = 68/273 (24%), Positives = 111/273 (40%), Gaps = 43/273 (15%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
+ +D+ +G L LR + T V R + + L P RL Y+GP+ R G R+
Sbjct: 54 TFKLVDQ-SGRLLGLRADITPQVAR-IDAHRLNRPRPLRLCYAGPVLRTRPDGLGGSREP 111
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFN-------------- 106
QIG E IG G + DAE+I + ++L +K + L+L +G
Sbjct: 112 LQIGAELIGHAGIEADAEVISLLLEALESLGVKGVTLDLGHVGIVRALLEALGLSEAQEE 171
Query: 107 ------ERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLN-SLRVLDSKNLIIREILINAP 159
+RK +L + + + + L VLD E+L +P
Sbjct: 172 ALRDALQRKDL-PELEELLAELGLDPALADALLALPELYGDPEVLDEA----LELLPGSP 226
Query: 160 K--LLDYLEKDSLDHFYGIQKILN--YNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQ 215
LD LE + +L + ++ +RG +YY VF G
Sbjct: 227 AAAALDELEA--------LAALLEALGPGVRLTLDLAELRGYEYYTGLVFAAYAPGAGQ- 277
Query: 216 NSICGGGRYDFLIKKFSNKFVPASGFAIGIERL 248
++ GGRYD L + F + PA+GF++ ++ L
Sbjct: 278 -ALARGGRYDNLGEVF-GRARPATGFSLDLDAL 308
>gnl|CDD|226228 COG3705, HisZ, ATP phosphoribosyltransferase involved in histidine
biosynthesis [Amino acid transport and metabolism].
Length = 390
Score = 109 bits (273), Expect = 1e-26
Identities = 79/303 (26%), Positives = 117/303 (38%), Gaps = 44/303 (14%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
++ DE G L LRP+ T V R P RL Y+G +FR ++GR +F
Sbjct: 62 LFKLEDE-TGGRLGLRPDFTIPVARIHATLLA--GTPLRLSYAGKVFRAREGRHGRRAEF 118
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFN-------------- 106
Q G+E +G DAE+I + K L L ++ LEL G F
Sbjct: 119 LQAGIELLGDDSAAADAEVIALALAALKALGLADLKLELGHAGIFRALLAAAGLPGGWRA 178
Query: 107 ------ERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPK 160
K + L + S E L +L RE+L A
Sbjct: 179 RLRRAFGDKDL-LGLELLVLAAPLSP---ELRGRLSELLALLG-------GREVLERARG 227
Query: 161 LLDYLEKD--SLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSI 218
LLD L +L+ + I ++ +R DYY VF D LG +++
Sbjct: 228 LLDELMAQGIALNEGRALADIARRLIEKIALDLGRLRHFDYYTGLVFLAYADGLG--DAL 285
Query: 219 CGGGRYDFLIKKFSNKFVPASGFAIGIERL----IELIKKININHNFSHQCDIYIVHVGK 274
GGRYD L+ F PA+GFA+ ++ L + L ++ F + D Y +
Sbjct: 286 ASGGRYDGLLGLFGRA-APATGFALRLDALAQGGLPLEERRYAAL-FGRELDYYTGAAFE 343
Query: 275 EAE 277
A+
Sbjct: 344 AAQ 346
>gnl|CDD|178145 PLN02530, PLN02530, histidine-tRNA ligase.
Length = 487
Score = 109 bits (274), Expect = 2e-26
Identities = 100/366 (27%), Positives = 168/366 (45%), Gaps = 45/366 (12%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYS-GPMFRHERPQYGRYRQ 59
+Y+F D+ G ++LRPE T S+ R V++ P + W++ G +R+ER GR R+
Sbjct: 129 LYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLSLPLK-WFAIGQCWRYERMTRGRRRE 186
Query: 60 FYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL--KNICLELNSIGNFNE-RKKY----- 111
YQ ++ IG PG + +AEL+ +K + + ++ ++++S K Y
Sbjct: 187 HYQWNMDIIGVPGVEAEAELLAAIVTFFKRVGITSSDVGIKVSSRKVLQAVLKSYGIPEE 246
Query: 112 -----CIDL-------INYIKKHKDSKWFCED-IKHSLYLNSLRVLDSKNLIIREILINA 158
C+ + I+K D+ E+ I+ L + SL+ LD + +L
Sbjct: 247 SFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLDD----LEALLGAD 302
Query: 159 PKLLDYLEK-DSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNS 217
+ + L++ SL YG Q L ++ +VRG+ YY VFE D+ G +
Sbjct: 303 SEAVADLKQLFSLAEAYGYQDWLVFD-------ASVVRGLAYYTGIVFE-GFDRAGKLRA 354
Query: 218 ICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAE 277
ICGGGRYD L+ F + PA GF G ++EL+K+ + HQ D + + ++ +
Sbjct: 355 ICGGGRYDRLLSTFGGEDTPACGFGFGDAVIVELLKEKGLLPELPHQVDDVVFALDEDLQ 414
Query: 278 LKAFVLSENLRTLGLKVILNCVFNNIHES--FKSQMKRANASNANFAAIIGENEIINNTL 335
A ++ LR G V L + E K K A A ++G +E +
Sbjct: 415 GAAAGVASRLREKGRSVDL------VLEPKKLKWVFKHAERIGAKRLVLVGASEWERGMV 468
Query: 336 IIKDLR 341
+KDL
Sbjct: 469 RVKDLS 474
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G,
H, P, S and T). Other tRNA synthetase sub-families are
too dissimilar to be included. This domain is the core
catalytic domain of tRNA synthetases and includes
glycyl, histidyl, prolyl, seryl and threonyl tRNA
synthetases.
Length = 171
Score = 90.4 bits (225), Expect = 1e-21
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHE-RPQYG--R 56
MY F D G+ L LRP + R L Y + P +L+ GP FR+E RP+ G R
Sbjct: 46 MYKFKDR-GGEELYLRPTAEVGITRLFKNEILSYRELPLKLYQIGPCFRYEARPRRGLGR 104
Query: 57 YRQFYQIGVEAIGFP--GPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCID 114
R+F Q+ E G P + EL+ + + ++L L + L + G+ D
Sbjct: 105 VREFTQVDAEIFGTPEQSEEELEELLKLAEEILQDLGL-PYRVVLATTGDLGGSASKEGD 163
Query: 115 LINYIKKH 122
L ++
Sbjct: 164 LEAWLPAE 171
>gnl|CDD|238436 cd00859, HisRS_anticodon, HisRS Histidyl-anticodon binding domain.
HisRS belongs to class II aminoacyl-tRNA synthetases
(aaRS). This alignment contains the anticodon binding
domain, which is responsible for specificity in
tRNA-binding, so that the activated amino acid is
transferred to a ribose 3' OH group of the appropriate
tRNA only.
Length = 91
Score = 79.5 bits (197), Expect = 1e-18
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAA 323
+ D+Y+V +G+ A +A L+E LR G+K ++ K Q K A+ S A FA
Sbjct: 1 EVDVYVVPLGEGALSEALELAEQLRDAGIKAEIDY----GGRKLKKQFKYADRSGARFAV 56
Query: 324 IIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYF 363
I+GE+E+ + +KDL +Q +++ +
Sbjct: 57 ILGEDELAAGVVTVKDLETG------EQETVALDELVEEL 90
>gnl|CDD|237097 PRK12420, PRK12420, histidyl-tRNA synthetase; Provisional.
Length = 423
Score = 82.1 bits (203), Expect = 3e-17
Identities = 91/386 (23%), Positives = 154/386 (39%), Gaps = 59/386 (15%)
Query: 1 MYSFIDELNGD-NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQ 59
+Y+ D+ G +L+LR + T + V N I KR + G +FR + GR+R+
Sbjct: 65 IYTLTDQ--GKRDLALRYDLTIPFAKVVAMNPNIRLPFKR-YEIGKVFRDGPIKQGRFRE 121
Query: 60 FYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNS-------IGNFNERKKYC 112
F Q V+ +G +AEL+ M L++ LNL + ++ N+ + +
Sbjct: 122 FIQCDVDIVGVESVMAEAELMSMAFELFRRLNL-EVTIQYNNRKLLNGILQAIGIPTELT 180
Query: 113 IDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDH 172
D+I + K E I L + I + + S+
Sbjct: 181 SDVILSLDK-------IEKIGIDGVRKDLLERGISEEMADTIC----NTVLSCLQLSIAD 229
Query: 173 FYGI----------------QKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGS 214
F Q+ L I+ N L RG+ Y TV+E K GS
Sbjct: 230 FKEAFNNPLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYE-IFLKDGS 288
Query: 215 -QNSICGGGRYDFLIKKF--SNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVH 271
+SI GGRYD +I F + P G + G++ + + + S D++I+
Sbjct: 289 ITSSIGSGGRYDNIIGAFRGDDMNYPTVGISFGLDVIYTALSQKET---ISSTADVFIIP 345
Query: 272 VGKEAELKAFVLSENLR-TLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEI 330
+G E + +++ LR T GLKV L K + AN N + IIGE E+
Sbjct: 346 LGTELQ--CLQIAQQLRSTTGLKVELELA----GRKLKKALNYANKENIPYVLIIGEEEV 399
Query: 331 INNTLIIKDLRNKYEDPTLKQISISF 356
T+++++++ E + +S
Sbjct: 400 STGTVMLRNMKEGSEVK----VPLSS 421
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA
synthetase class II core domain. This domain is the core
catalytic domain of tRNA synthetases of the subgroup
containing glycyl, histidyl, prolyl, seryl and threonyl
tRNA synthetases. It is primarily responsible for
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. These enzymes belong to class II
aminoacyl-tRNA synthetases (aaRS) based upon their
structure and the presence of three characteristic
sequence motifs in the core domain. This domain is also
found at the C-terminus of eukaryotic GCN2 protein
kinase and at the N-terminus of the ATP
phosphoribosyltransferase accessory subunit, HisZ and
the accessory subunit of mitochondrial polymerase gamma
(Pol gamma b) . Most class II tRNA synthetases are
dimers, with this subgroup consisting of mostly
homodimers. These enzymes attach a specific amino acid
to the 3' OH group of ribose of the appropriate tRNA.
Length = 235
Score = 76.3 bits (188), Expect = 4e-16
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 1 MYSFID---ELNGDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQY-- 54
MY+F D EL +L LRP + + L Y P RL GP FRHE
Sbjct: 48 MYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRG 107
Query: 55 -GRYRQFYQIGVEAIGFPG--PDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKK 110
R R+F Q+ G P + E + + + + L L + + + F K
Sbjct: 108 LMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGL-PVRVVVADDPFFGRGGK 165
Score = 30.8 bits (70), Expect = 0.93
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 11/66 (16%)
Query: 195 RGMDYYNRTVFEWTTDKL--GSQNSICGGGRY--------DFLIKKFSN-KFVPASGFAI 243
RG+D TV E+ G G F I + + G A
Sbjct: 166 RGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDEDGGGRAHTGCGGAG 225
Query: 244 GIERLI 249
G ERL+
Sbjct: 226 GEERLV 231
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 77.6 bits (191), Expect = 2e-15
Identities = 86/373 (23%), Positives = 153/373 (41%), Gaps = 41/373 (10%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
+Y D+ G+ SLR + T R V N + + + ++R + P GRYR+F
Sbjct: 385 IYDLADQ-GGELCSLRYDLTVPFARYVAMNGI---TSFKRYQIAKVYRRDNPSKGRYREF 440
Query: 61 YQIGVEAIGFPGP-DIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYC------- 112
YQ + G P D E+I + + L L++ ++LN + + C
Sbjct: 441 YQCDFDIAGVYEPMGPDFEIIKVLTELLDELDIGTYEVKLNHRKLLDGMLEICGVPPEKF 500
Query: 113 ------IDLIN-----YIKKHK-DSKWFCEDIKHSLYLNSLRVLDSKNL-IIREILINAP 159
ID ++ +KK + K + + + L ++ ++
Sbjct: 501 RTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKI--GNFVKERGPPLELLSKLRQEGS 558
Query: 160 KLLD-YLEKDSLDHFYGIQKILNYNNISYKI--NTKLVRGMDYYNRTVFEWTTDKLGSQ- 215
+ L + +LD + K L + KI + L RG+DYY ++E G+Q
Sbjct: 559 EFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVF--KGAQV 616
Query: 216 NSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNF---SHQCDIYIVHV 272
SI GGRYD L+ FS K VPA G ++GIER+ ++++ + + ++ + +
Sbjct: 617 GSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQQEEEKSQVIRPTETEVLVSII 676
Query: 273 GKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIIN 332
G + A L L G+K + +KRA S + ++GE E+
Sbjct: 677 GDDKLALAAELVSELWNAGIKAEY-----KVSTRKAKHLKRAKESGIPWMVLVGEKELSK 731
Query: 333 NTLIIKDLRNKYE 345
+ +K+L E
Sbjct: 732 GFVKLKNLEAGVE 744
>gnl|CDD|183413 PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit;
Provisional.
Length = 373
Score = 63.8 bits (156), Expect = 3e-11
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
++ DE NG+ L LRP+ T V R I P R Y G +FR R R +F
Sbjct: 49 IFVTSDE-NGEELCLRPDFTIPVCRRHIATAG--GEPARYAYLGEVFRQRR---DRASEF 102
Query: 61 YQIGVEAIGFPGPDI---DAELIIMCSRLWKNLNLKNICLELNSIGNFN 106
Q G+E+ G D DAE++ + L ++ + L +G F
Sbjct: 103 LQAGIESFG--RADPAAADAEVLALALEALAALGPGDLEVRLGDVGLFA 149
Score = 53.8 bits (130), Expect = 5e-08
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 195 RGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKF-SNKFVPASGFAIGIERL 248
R +DYY VFE G + GGGRYD L+ + + + +PA GF+I ++RL
Sbjct: 314 RPLDYYTGFVFEIRAAGNGDPP-LAGGGRYDGLLTRLGAGEPIPAVGFSIWLDRL 367
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 57.5 bits (139), Expect = 1e-09
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 7 ELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYG--RYRQFYQIG 64
N ++L LRP ++R + I P RL GP FR+E + G R R+F Q+
Sbjct: 47 AENEEDLYLRPTLEPGLVRLF--VSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLE 104
Query: 65 VEAIGFPGPD--IDAELIIMCSRLWKNLNLK-NICLELNSIGNF 105
E G G + ELI + L + L +K +I + G F
Sbjct: 105 GEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTPGEF 148
Score = 31.3 bits (71), Expect = 0.49
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 11/62 (17%)
Query: 198 DYYNRTVFEWTTD-KLGSQNSICGGGRY----------DFLIKKFSNKFVPASGFAIGIE 246
FE D G I GG FL + ++ P GF +G+E
Sbjct: 150 PGGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTIGFGLGLE 209
Query: 247 RL 248
RL
Sbjct: 210 RL 211
>gnl|CDD|202547 pfam03129, HGTP_anticodon, Anticodon binding domain. This domain
is found in histidyl, glycyl, threonyl and prolyl tRNA
synthetases it is probably the anticodon binding domain.
Length = 93
Score = 49.9 bits (120), Expect = 5e-08
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAA 323
Q + + E E A L+E LR G++V L+ +ES + + A+ F
Sbjct: 1 QVVVIPLGEKDELEDYAQKLAEELREAGIRVELDDR----NESLGKKFRDADLIGIPFRL 56
Query: 324 IIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYF 363
++GE E+ N T+ ++D ++ ++S ++
Sbjct: 57 VVGEKELENGTVTVRDRDTG------EKETVSLEELVEKL 90
>gnl|CDD|237098 PRK12421, PRK12421, ATP phosphoribosyltransferase regulatory
subunit; Provisional.
Length = 392
Score = 45.0 bits (107), Expect = 4e-05
Identities = 80/321 (24%), Positives = 130/321 (40%), Gaps = 57/321 (17%)
Query: 4 FIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQ-YGRYRQFY 61
ID+L+G + +R + T V R I+ +L+ +G RL Y+G + H PQ R
Sbjct: 69 LIDQLSGRLMGVRADITPQVAR--IDAHLLNREGVARLCYAGSVL-HTLPQGLFGSRTPL 125
Query: 62 QIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNF----------NERKKY 111
Q+G E G G + D E+I + L +N + + L+L +G F E ++
Sbjct: 126 QLGAELYGHAGIEADLEIIRLMLGLLRNAGVPALHLDLGHVGIFRRLAELAGLSPEEEEE 185
Query: 112 CIDLINYIKKHKDS-KWFC------EDIKHSLY----LNS-LRVLDSKNLIIREILINAP 159
DL +K C D++ Y LN L LD +L
Sbjct: 186 LFDL--LQRKALPELAEVCQNLGVGSDLRRMFYALARLNGGLEALDRA----LSVLALQD 239
Query: 160 ----KLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQ 215
+ LD L K H ++ +S + +L RG Y+ VF G
Sbjct: 240 AAIRQALDEL-KTLAAH---LKNRWPELPVSIDL-AEL-RGYHYHTGLVFAAYIP--GRG 291
Query: 216 NSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHV-GK 274
++ GGRYD I + + PA+GF++ ++ L+ L F + I+ G
Sbjct: 292 QALARGGRYDG-IGEAFGRARPATGFSMDLKELLALQ--------FLEEEAGAILAPWGD 342
Query: 275 EAELKAFVLSENLRTLGLKVI 295
+ +L A + LR G +V+
Sbjct: 343 DPDLLAAI--AELRQQGERVV 361
>gnl|CDD|183411 PRK12293, hisZ, ATP phosphoribosyltransferase regulatory subunit;
Provisional.
Length = 281
Score = 40.7 bits (96), Expect = 6e-04
Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 42/256 (16%)
Query: 4 FIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQI 63
F DE N +SLR + T V+R V + K+ +Y P+FR+ + YQI
Sbjct: 63 FSDEKN-HQISLRADSTLDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS------NEIYQI 115
Query: 64 GVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDL---INYIK 120
G E IG D+ +E++ + + +++ L L+ I I N K L I K
Sbjct: 116 GAELIG--EEDL-SEILNIAAEIFEELELEPIL----QISNIKIPKLVAEILGLDIEVFK 168
Query: 121 KHKDSKWFCEDIKHSLYLNSL-RVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKI 179
K + K +++ +LN L R+ ++L E++ P + K+ L+ + +
Sbjct: 169 KGQIEKLLAQNVP---WLNKLVRIKTLEDL--DEVIELVPDEI----KEELEKLKELAES 219
Query: 180 LNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSI-CGGGRYDFLIKKFSNKFVPA 238
+ Y N+ I M YY+ F + NS GG Y + +
Sbjct: 220 IKYENLV--IAPLYYAKMRYYDDLFFRFFDG-----NSTLASGGNY-------EIDGISS 265
Query: 239 SGFAIGIERLIELIKK 254
SGFA+ + LIE++ K
Sbjct: 266 SGFALYTDNLIEILLK 281
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N).
Length = 345
Score = 32.6 bits (75), Expect = 0.33
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 223 RYDFLIKKFSNKFVPASGFAIGIERLIELI 252
++ F + P G +G++RL+ L+
Sbjct: 299 KFGFYLDALKYGMPPHGGIGLGLDRLVMLL 328
>gnl|CDD|110998 pfam02055, Glyco_hydro_30, O-Glycosyl hydrolase family 30.
Length = 495
Score = 32.6 bits (74), Expect = 0.36
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 12 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF- 70
NL+L EG S + + ++ +I K +Y PMF + F + G I
Sbjct: 378 NLALDAEGGPSWVSNFVDAPVIAFPAKAQFYKQPMFYA----IAHFSHFIKPGAVRIDHS 433
Query: 71 ---PGPDIDA 77
P+++A
Sbjct: 434 LNQKNPELEA 443
>gnl|CDD|217547 pfam03419, Peptidase_U4, Sporulation factor SpoIIGA.
Length = 291
Score = 32.2 bits (74), Expect = 0.40
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 228 IKKFSNKFVPASGFAIG---IERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLS 284
S KFV GF I +R E IK+ I + ++ IV GK+ +K V +
Sbjct: 121 GDPISWKFVLI-GFPILYIFSKRRWEYIKRRKIQYEL--IVEVEIVINGKKLNVKGLVDT 177
Query: 285 EN 286
N
Sbjct: 178 GN 179
>gnl|CDD|184902 PRK14938, PRK14938, Ser-tRNA(Thr) hydrolase; Provisional.
Length = 387
Score = 31.0 bits (70), Expect = 1.2
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 269 IVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGEN 328
I+ V K+ + ++E LR G++V ++ ++ +S ++++RA F IIGE
Sbjct: 279 ILPVKKDFLDFSIQVAERLRKEGIRVNVD----DLDDSLGNKIRRAGTEWIPFVIIIGER 334
Query: 329 EIINNTLIIKDLRNKYE 345
E+ +TL +K +R E
Sbjct: 335 EVKTSTLTVK-IRANNE 350
>gnl|CDD|183498 PRK12395, PRK12395, maltoporin; Provisional.
Length = 419
Score = 30.7 bits (69), Expect = 1.4
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 200 YNRTVFEWTTDKLGSQNSIC-GGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININ 258
YN+ V ++ L +QN I GGG YD +K A G+ + LI + K + N
Sbjct: 250 YNKLVLQYANKGL-AQNMISQGGGWYDMW-----HKTDEAKGYRVINTGLIPITDKFSFN 303
Query: 259 HNFS 262
H +
Sbjct: 304 HVLT 307
>gnl|CDD|214583 smart00247, XTALbg, Beta/gamma crystallins. Beta/gamma
crystallins.
Length = 82
Score = 27.9 bits (63), Expect = 2.2
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 7 ELNGDNLSLRPEGTASVIRSV-IENN--LIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
EL+ D SL+ G+ + SV +E+ ++Y+ P Y G + E +Y Y+++
Sbjct: 16 ELSDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPN---YRGRQYVLEPGEYPDYQEW 69
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This family
consists of known phosphorylases, and homologs believed
to share the function of using inorganic phosphate to
cleave an alpha 1,4 linkage between the terminal glucose
residue and the rest of the polymer (maltodextrin,
glycogen, etc.). The name of the glucose storage polymer
substrate, and therefore the name of this enzyme,
depends on the chain lengths and branching patterns. A
number of the members of this family have been shown to
operate on small maltodextrins, as may be obtained by
utilization of exogenous sources. This family represents
a distinct clade from the related family modeled by
TIGR02093/pfam00343.
Length = 601
Score = 30.0 bits (68), Expect = 2.4
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 114 DLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLII 151
LI+YI++ +W ++ + + R LD L I
Sbjct: 355 RLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTI 392
>gnl|CDD|236759 PRK10785, PRK10785, maltodextrin glucosidase; Provisional.
Length = 598
Score = 29.2 bits (66), Expect = 3.7
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 258 NHNFSHQCDIYIV--HVGKEAELKAFVLSENLRTLGLKVILNCVFN 301
H + + D V +G +A L L + G++++L+ VFN
Sbjct: 207 VHKYDTE-DYRHVDPQLGGDAALLR--LRHATQQRGMRLVLDGVFN 249
>gnl|CDD|200476 cd11337, AmyAc_CMD_like, Alpha amylase catalytic domain found in
cyclomaltodextrinases and related proteins.
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase
(NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC
3.2.1.133) catalyze the hydrolysis of alpha-(1,4)
glycosidic linkages on a number of substrates including
cyclomaltodextrins (CDs), pullulan, and starch. These
enzymes hydrolyze CDs and starch to maltose and pullulan
to panose by cleavage of alpha-1,4 glycosidic bonds
whereas alpha-amylases essentially lack activity on CDs
and pullulan. They also catalyze transglycosylation of
oligosaccharides to the C3-, C4- or C6-hydroxyl groups
of various acceptor sugar molecules. Since these
proteins are nearly indistinguishable from each other,
they are referred to as cyclomaltodextrinases (CMDs).
This group of CMDs is mainly bacterial. The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 328
Score = 29.0 bits (66), Expect = 4.1
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 273 GKEAELKAFVLSENLRTLGLKVILNCVFN 301
G + KA V L G++V+L+ VFN
Sbjct: 71 GTNEDFKALV--AALHERGIRVVLDGVFN 97
>gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation,
ribosomal structure and biogenesis].
Length = 435
Score = 28.7 bits (65), Expect = 4.9
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 21/53 (39%)
Query: 218 ICGGG----RYDFLIKKFSNK-----------------FVPASGFAIGIERLI 249
I GG YD L+++ K P +GF +G+ERL+
Sbjct: 359 IIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLV 411
>gnl|CDD|223757 COG0685, MetF, 5,10-methylenetetrahydrofolate reductase [Amino acid
transport and metabolism].
Length = 291
Score = 28.5 bits (64), Expect = 5.9
Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 34/170 (20%)
Query: 106 NERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYL 165
+ Y +DL+ IKK + F I + Y +SK++ + L
Sbjct: 123 GGKDLYSVDLVELIKKMRGG-IFD--IGVAAYPEGHP--ESKDVKED---------IKRL 168
Query: 166 EKDSLD---------HFYGIQKILNYNNISYK--INTKLVRG-MDYYNRTVFEWTTDKLG 213
++ +D F+ ++ + I+ ++ G M N
Sbjct: 169 KRK-VDAGADFFITQFFFDVEAFERFAERVRAAGIDIPIIPGIMPVTNFKQLLR------ 221
Query: 214 SQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSH 263
S+CG D +IK+ P S +GI I+ +K + H
Sbjct: 222 -FASLCGIKIPDEIIKRLELSDDPESRKLVGIAVAIDEVKDLVREGEGLH 270
>gnl|CDD|233070 TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ.
All proteins in this family are 5'-3' single-strand DNA
exonucleases. These proteins are used in some aspects of
mismatch repair, recombination, and recombinational
repair [DNA metabolism, DNA replication, recombination,
and repair].
Length = 539
Score = 28.0 bits (63), Expect = 8.6
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 195 RGMDYYNRTVFEWTTDK----LGSQNSICGGGRYDFLIKKFSNKFVP------ASGFAIG 244
R + +N+ V D+ GS SI G YD L + F+ A+G +
Sbjct: 345 RLAETFNKPVIVLAIDEGKGAKGSARSISGIDLYDLLSELREALFLKFGGHAMAAGLTLK 404
Query: 245 IERLIELIKKIN 256
E L E +K+
Sbjct: 405 RENLEEFREKLE 416
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 28.2 bits (64), Expect = 9.2
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 21/53 (39%)
Query: 218 ICGGG----RYDFLIKKFSN---------------KF--VPASGFAIGIERLI 249
I GG R D L + ++ VP SGF +G ERL+
Sbjct: 374 IIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLV 426
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.418
Gapped
Lambda K H
0.267 0.0830 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,515,109
Number of extensions: 1958302
Number of successful extensions: 1973
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1922
Number of HSP's successfully gapped: 85
Length of query: 373
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 275
Effective length of database: 6,590,910
Effective search space: 1812500250
Effective search space used: 1812500250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)