RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17090
(373 letters)
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 516 bits (1332), Expect = 0.0
Identities = 189/374 (50%), Positives = 261/374 (69%), Gaps = 4/374 (1%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
MYSF+D LNG+NL+LRPE TA+V+R+ IE+N++YDGPKRLWY GPMFRHERPQ GRYRQF
Sbjct: 94 MYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQF 153
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIK 120
+Q+GVEA+GF GPD DAE+++MC RLW++L L I LE+NS+G ER + ++LI Y++
Sbjct: 154 HQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 213
Query: 121 KHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKIL 180
+H D +D + LY N LRVLD+KN ++EI+ NAPKL+D+L S HF G+Q++L
Sbjct: 214 QHADK--LDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQRLL 271
Query: 181 NYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASG 240
NN+ + IN +LVRG+DYYN TVFEW TDKLG+Q ++ GGRYD LI++ K A G
Sbjct: 272 KANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACG 331
Query: 241 FAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 300
+A+GIER++EL+K+ ++ D+Y+VH G A +AF+++E LR GL VIL+C
Sbjct: 332 WAMGIERILELLKEEHLVPE-QEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSA 390
Query: 301 NNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLK-QISISFKDA 359
+ SFKSQMKRA+AS A FA I GE+E+ N T +K LR +D Q S+ +
Sbjct: 391 DGAGASFKSQMKRADASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESL 450
Query: 360 ENYFYKKIIKNINN 373
+ ++ +
Sbjct: 451 TEFLINAMVATAED 464
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 497 bits (1282), Expect = e-177
Identities = 164/370 (44%), Positives = 240/370 (64%), Gaps = 16/370 (4%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
MY+F D NGD+L+LRPEGTA +R+ IE+ L+Y+ +RLWY GPMFRHERPQ GRYRQF
Sbjct: 66 MYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQF 124
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL-KNICLELNSIGNFNERKKYCIDLINYI 119
+Q+G E G GPDIDAELI++ +R W+ L + +++ LELNSIG+ R Y L+ ++
Sbjct: 125 HQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFL 184
Query: 120 KKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKI 179
++HK+ ED K +Y N LRVLDSKN ++ +L +AP L DYL+++S +HF G+ K+
Sbjct: 185 EQHKEK--LDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKL 242
Query: 180 LNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPAS 239
L I+Y +N +LVRG+DYYNRTVFEW T+ LGSQ ++C GGRYD L+++ + PA
Sbjct: 243 LESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV 302
Query: 240 GFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLR--TLGLKVILN 297
GFA+G+ERL+ L++ +N DIY+V G + + A L+E LR G+K++ N
Sbjct: 303 GFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTN 362
Query: 298 CVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFK 357
+FK Q RA+ A A ++GE+E+ N T ++KDLR+ +Q +++
Sbjct: 363 HG----GGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSG------EQTAVAQD 412
Query: 358 DAENYFYKKI 367
+ +
Sbjct: 413 SVAAHLRTLL 422
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 492 bits (1269), Expect = e-175
Identities = 127/370 (34%), Positives = 208/370 (56%), Gaps = 18/370 (4%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDG--PKRLWYSGPMFRHERPQYGRYR 58
MY+F D+ +++LRPEGTA+V+RS IE+ + + P +L+Y+GPMFR+ER Q GRYR
Sbjct: 64 MYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYR 122
Query: 59 QFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINY 118
QF Q GVEAIG P +DAE++ M ++++ LK++ L +NS+G+ RK+Y L+ +
Sbjct: 123 QFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKH 182
Query: 119 IKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQK 178
+ FC D + L+ + +R+LD K +E + AP++ D+L ++S ++ ++
Sbjct: 183 FEPVIHE--FCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKA 240
Query: 179 ILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKL---GSQNSICGGGRYDFLIKKFSNKF 235
L+ I Y + LVRG+DYY T FE D G+ ++CGGGRY+ L++
Sbjct: 241 YLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPS 300
Query: 236 VPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVI 295
GFA+ IERL+ +++ I + D++IV +G +A+ A L +LR G+K
Sbjct: 301 ETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKAD 360
Query: 296 LNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISIS 355
+ + K QMK+A+ A F +IG+ E+ NN + +K++ + +I
Sbjct: 361 KDYL----QRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTG------ESETIE 410
Query: 356 FKDAENYFYK 365
YF K
Sbjct: 411 LDALVEYFKK 420
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 490 bits (1264), Expect = e-174
Identities = 119/370 (32%), Positives = 204/370 (55%), Gaps = 17/370 (4%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLI-YDGPKRLWYSGPMFRHERPQYGRYRQ 59
M++F D G +L+LRPEGTA+++R+ +E+ + + P RLW +GPMFR ERPQ GRYRQ
Sbjct: 65 MFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQ 123
Query: 60 FYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYI 119
F+Q+ EA+G P +DAE +++ K L L+ + ++L+S+G+ +R +Y L +
Sbjct: 124 FHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVL 183
Query: 120 KKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILIN--APKLLDYLEKDSLDHFYGIQ 177
H+++ ED K L N +R+LDSK+ + +L +LD+L +++ H ++
Sbjct: 184 SPHREA--LSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVE 241
Query: 178 KILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVP 237
+ L ++ Y++ LVRG+DYY RT FE +++G+Q+++ GGGRYD L + VP
Sbjct: 242 RHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVP 301
Query: 238 ASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILN 297
GFA G+ER+ ++ D+Y++ + +EA +AF L+E LR L+
Sbjct: 302 GVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRP-RLRAEYA 360
Query: 298 CVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFK 357
++ A A FA +GE+E+ + +K L +Q+ +S +
Sbjct: 361 LA----PRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATG------EQVRLSRE 410
Query: 358 DAENYFYKKI 367
+ Y + +
Sbjct: 411 EVPGYLLQAL 420
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 389 bits (1001), Expect = e-134
Identities = 93/377 (24%), Positives = 161/377 (42%), Gaps = 26/377 (6%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
YSF+D+ G ++L PE T S +R V + P R + ++R+E PQ GRYR+
Sbjct: 65 TYSFVDK-GGREVTLIPEATPSTVRMVTSRKDLQR-PLRWYSFPKVWRYEEPQAGRYREH 122
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNI-CLELNSIGNFNERKKYC------- 112
YQ + G P+ DAE+I + S + L L++I + +NS E
Sbjct: 123 YQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSDPFS 182
Query: 113 -IDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLD 171
+I+ K ++ + + + + ++ R I A + + +
Sbjct: 183 VFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMAR--ITGKSSEEIA 240
Query: 172 HFYGIQKILNYNNIS-YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKK 230
++ +L + + + +VRG+ YY VFE D+ G +I GGGRYD L
Sbjct: 241 RMAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFE-AYDRSGQFRAILGGGRYDNLASL 299
Query: 231 FSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTL 290
S + VPA GF +G + L+K+ N+ + +YI VGK S LR
Sbjct: 300 MSGESVPAVGFGMGDAVISLLLKRENVQIP-REKKSVYICRVGKINSSIMNEYSRKLRER 358
Query: 291 GLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLK 350
G+ V + + +Q+K A+A A+FA I GE ++ + I+++
Sbjct: 359 GMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTG------S 408
Query: 351 QISISFKDAENYFYKKI 367
Q ++ + +
Sbjct: 409 QENVGLDSVVEHLISQA 425
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, alloste evolution; 2.90A
{Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 355 bits (912), Expect = e-122
Identities = 54/262 (20%), Positives = 108/262 (41%), Gaps = 11/262 (4%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
M+ FI G +++LR + T ++R + R Y G +FR E+ GR +
Sbjct: 84 MFQFIKH-EGQSITLRYDFTLPLVRLYSQIKD--STSARYSYFGKIFRKEKRHKGRSTEN 140
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIK 120
YQIG+E G + E++ + ++ + L L E+ S F + +
Sbjct: 141 YQIGIELFGESADKSELEILSLALQVIEQLGLNKTVFEIGSAKFFQRLCQLADGSTELLT 200
Query: 121 KHKDSKWF---CEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQ 177
+ K I+ + + LR L + I E+ + + + + F ++
Sbjct: 201 ELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFITNELSRLENLVTNTKDDVLISSFDQLK 260
Query: 178 KILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKF 235
+ ++ I+ +V MDYY +F+ + + I GGRYD L+ F +
Sbjct: 261 EFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSS--AANQPILSGGRYDQLLSNFQEE- 317
Query: 236 VPASGFAIGIERLIELIKKINI 257
A GF ++ +++ +++ +
Sbjct: 318 AFAIGFCCHMDTILKALERQEL 339
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 294 bits (755), Expect = 2e-97
Identities = 78/346 (22%), Positives = 132/346 (38%), Gaps = 34/346 (9%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
++ +D+ G+ L LRP+ TA + R V + P RL Y ++R ++ + G+ +F
Sbjct: 68 LFKLLDQ-QGNTLVLRPDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEF 126
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFN-----------ERK 109
Q+GVE IG D E+I + K L + + +G N
Sbjct: 127 EQLGVELIGDGTASADGEVIALMIAALKRAGLSEFKVAIGHVGYVNALLMDVVGNEQRAD 186
Query: 110 KYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDS 169
+ L ++ + L L S I + K +
Sbjct: 187 RLRRFLYEKNYVGYRE-HVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLIQTEKGKTA 245
Query: 170 LDHFYGIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFL 227
L + ++L S K + LV M YY VFE ++LG +C GGRYD L
Sbjct: 246 LAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNRLG--VPLCSGGRYDEL 303
Query: 228 IKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENL 287
+ KF A+GF + I+ L+E + I S+ + + E +A L+
Sbjct: 304 LSKFHRP-AQATGFGVRIDLLVEALNGEII----SNGHEQTCILFSNERRFEAIELARKK 358
Query: 288 RTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAII---GENEI 330
R G V+L + + + +A ++N+ +I G
Sbjct: 359 RANGEAVVLQDL---------AGVTDVDAMSSNYQDVIYCIGTAGR 395
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 293 bits (752), Expect = 2e-96
Identities = 73/360 (20%), Positives = 140/360 (38%), Gaps = 32/360 (8%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
M++FI + G ++LRPE T S+ R ++ P + + +R+E GR R+
Sbjct: 88 MFNFITK-GGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREH 146
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIK 120
YQ ++ +G + EL+ ++L L + + + N R K ++
Sbjct: 147 YQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKV----NSR-KVLQTVVEQAG 201
Query: 121 KHKDSKWFCEDI-------KHSL--YLNSLRVLDSKNLIIREIL-INAPKLLDYLEKDSL 170
D F K L VL + ++ I + K +D + +
Sbjct: 202 VTSDK--FAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVG 259
Query: 171 DHFYGIQ------KILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGG 222
+ ++ + + + +VRG+ YY VFE D+ G ++CGGG
Sbjct: 260 EEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFE-GFDREGKFRALCGGG 318
Query: 223 RYDFLIKKFSNKF-VPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAF 281
RYD L+ + + +P +GF G ++EL+++ + + H D ++ + A
Sbjct: 319 RYDNLLTTYGSPTPIPCAGFGFGDCVIVELLQEKRLLPDIPHVVDDVVIPFDESMRPHAL 378
Query: 282 VLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLR 341
+ LR G + + + A+ A A ++ E + +K LR
Sbjct: 379 AVLRRLRDAGRSADII--LDK--KKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLR 434
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 242 bits (620), Expect = 1e-77
Identities = 52/288 (18%), Positives = 101/288 (35%), Gaps = 38/288 (13%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERP------QY 54
D GD ++LRPE T S+ R P R Y ++R
Sbjct: 82 WIRLFDG-GGDAVALRPEMTPSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWAS 140
Query: 55 GRYRQFYQIGVEAIGFPGP-DIDAELIIMCSRLWKNLNLKNICLELNSIGNFNE------ 107
G+ + Q+G+E IG D+D +++ + +++ + ++
Sbjct: 141 GKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVRHHRIVVSHARLVPRLLDALG 200
Query: 108 -------------RKKYCIDLINYIKKHKDSKWFCEDIKHSLY----LNSLRVLDSKNLI 150
+ + H + + R ++ +
Sbjct: 201 ISASLSRAFLACLTSGNYVQFRELWQLHAAKDVDLLANLLTWSPAERDAAKRSREASDRE 260
Query: 151 IREILINAPKLLDYLE-KDSLDHFYGIQKIL---NYNNISYKINTKLVRGMDYYNRTVFE 206
+ +L +A + +D+ + + + L + + L R +DYY VFE
Sbjct: 261 LEALLRDAVDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDYYTGLVFE 320
Query: 207 WTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKK 254
+G+ I GGRYD L+ +F PA GFA +ER++ +++
Sbjct: 321 MFAPGVGA--PIAQGGRYDELLAQFGAG-APAVGFAFEVERVMAVLEA 365
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 206 bits (525), Expect = 2e-62
Identities = 76/409 (18%), Positives = 152/409 (37%), Gaps = 71/409 (17%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
D + +L+ + T + + + P + +FR ER + GR+RQF
Sbjct: 85 KDKSGDT-GSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQF 143
Query: 61 YQIGVEAIGFPGPDI--DAELIIMCSRLWKNLNLKNICLELNS----------IGNFNER 108
Q ++ +G + DA++ + + +++ +N+ + + +N+ + +
Sbjct: 144 RQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQ 203
Query: 109 KKY---CID--------------------------LINYIKKHKDSKWFCEDIKHSLYLN 139
K ID +I+++K + L
Sbjct: 204 IKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVDDVLD------KLK 257
Query: 140 SLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDY 199
L ++ + ++ + L + + I+ + RG++Y
Sbjct: 258 HLSQTLPESEQFNLGVSELETVITGVRN------------LGVPDKRFCIDLAIARGLNY 305
Query: 200 YNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKIN-IN 258
Y TV+E T + SIC GGRY+ L+ F + +P G +IG+ RLI + K +N
Sbjct: 306 YTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGILN 365
Query: 259 HNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASN 318
+ +V++ E +S+ LR GL VI N Q + A+
Sbjct: 366 TLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQ----LGKQFQAADKQG 421
Query: 319 ANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367
F IIG +E +KDL++ +Q+ ++ D +++
Sbjct: 422 IRFCVIIGADEAAAQKSSLKDLQSG------EQVEVALADLAEEIKRRL 464
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA
synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP:
d.104.1.1 PDB: 1usy_C*
Length = 275
Score = 174 bits (442), Expect = 3e-52
Identities = 42/251 (16%), Positives = 93/251 (37%), Gaps = 21/251 (8%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
F+D G+ S+R + T +V+ + D ++WY+ ++R+
Sbjct: 37 GNFFLDR-KGNLFSIREDFTKTVLNHRKRYSP--DSQIKVWYADFVYRYSGSDL---VAE 90
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNER-KKYCIDLINYI 119
YQ+G+E + D E++ + + +E+ G + + K+ DL +
Sbjct: 91 YQLGLEKVPRNSLDDSLEVLEIIVESASEFFEGPVIVEIGHTGVYEDLLKEIPKDLHEKV 150
Query: 120 KKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEK--DSLDHFYGIQ 177
D+K +I+ ++ + + + +I I +P+ L ++ +
Sbjct: 151 LNLIDTK-NLAEIEFLSHMKKIDLSRVEKIIEDSIYRRSPEHLKTMDLPLSVREDLLSAS 209
Query: 178 KILN--YNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKF 235
L + +S +I+ L R ++ Y +F + GG Y +
Sbjct: 210 SFLQEKFPTVSVEIDLTLARTIEEYCGLIFTIYDTSSS--RLVAAGGEYTVNGE------ 261
Query: 236 VPASGFAIGIE 246
G +I +E
Sbjct: 262 -KGVGGSIFLE 271
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 104 bits (261), Expect = 6e-26
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 4/107 (3%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
+ I + N LRP T ++ + + + P +++ GP +R E +F
Sbjct: 120 LSKQIFRV-DKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEF 178
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNE 107
+ +G + E II +L + + +S F +
Sbjct: 179 TMLVFWQMGSGCTRENLESIIT--DFLNHLGIDFKIV-GDSCMVFGD 222
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 44.8 bits (106), Expect = 2e-05
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 11 DNLSLRPEGTASVIRSVIENNLI--YDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAI 68
LRP ++ + L +D P R++ G +R E +F + + +
Sbjct: 123 GKKCLRPMLAPNLYT--LWRELERLWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTEL 180
Query: 69 GFPGPDIDAELIIMCSRLWKNLNLKNI 95
G P + L M + + ++
Sbjct: 181 GTPLEERHQRLEDMARWVLEAAGIREF 207
Score = 31.4 bits (71), Expect = 0.38
Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 12/85 (14%)
Query: 166 EKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRT-VFEWTTDKLGSQNSICGGGRY 224
+ D + + + +V G E + +G +
Sbjct: 188 HQRLEDMARWVLEAAGIREFELVTESSVVYGDTVDVMKGDLELASGAMGPHFLDEKWEIF 247
Query: 225 DFLIKKFSNKFVPASGFAIGIERLI 249
D P G G+ERL+
Sbjct: 248 D-----------PWVGLGFGLERLL 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 5e-05
Identities = 45/287 (15%), Positives = 82/287 (28%), Gaps = 78/287 (27%)
Query: 75 IDAELIIMCSRL--WKNLNLKNI------CLE-LNSIGNFNERKKYCIDLINYIKKHKDS 125
I + + WK++N + L L E +K L + +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP----AEYRKMFDRLSVF---PPSA 385
Query: 126 K---------WF------CEDIKHSLYLNSLRVLDSKNLIIR------EILINAP----- 159
WF + + L+ SL K I E+ +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 160 --KLLD-YLEKDSLDHFYGIQKILN---YNNISYKINTKLVRGMDYYNRTV---FEWTTD 210
++D Y + D I L+ Y++I + + R V F +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 211 KL--GSQNSICGGGRYDFL--IKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCD 266
K+ S G + L +K + ERL+ I +F + +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLVNAIL------DFLPKIE 556
Query: 267 IYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR 313
++ K +L L++ L I E Q++R
Sbjct: 557 ENLIC-SKYTDL-------------LRIALMAEDEAIFEEAHKQVQR 589
Score = 35.2 bits (80), Expect = 0.035
Identities = 51/366 (13%), Positives = 104/366 (28%), Gaps = 119/366 (32%)
Query: 1 MY-SFIDELNGDNLSL------RPEGTASVIRSVI-----ENNLIYDGPK---RLWYSGP 45
MY D L DN R + +R + N++ DG + W +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 46 MFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNF 105
+ + Q + + + + E ++ L+ + +++ N+
Sbjct: 170 VCLSYKVQCKMDFKIFWLNL------KNCNSPETVLE--------MLQKLLYQIDP--NW 213
Query: 106 NERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYL 165
R + ++ ++ H +K Y N L VL +
Sbjct: 214 TSRSDHSSNIK--LRIHSIQAELRRLLKSKPYENCLLVLL-----------------NVQ 254
Query: 166 EKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYD 225
+ + F N+S KI L+ TT + +
Sbjct: 255 NAKAWNAF----------NLSCKI---LL-------------TTRFKQVTDFLSAATTTH 288
Query: 226 FLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSE 285
+ S P ++ L+K ++ + +L VL+
Sbjct: 289 ISLDHHSMTLTPDEVKSL-------LLKYLDC----------------RPQDLPREVLTT 325
Query: 286 NLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGE--NEIIN---NTLIIKDL 340
N R L + I ES + + + N+ + + II N L +
Sbjct: 326 NPRRLSI----------IAESIRDGLATWD----NWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 341 RNKYED 346
R ++
Sbjct: 372 RKMFDR 377
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 1e-04
Identities = 30/220 (13%), Positives = 76/220 (34%), Gaps = 47/220 (21%)
Query: 179 ILNYNNISYKINTKLVRGMDYYNRTV----FEWT----TDKLGSQN---SICGGGRYDFL 227
L++ ++ + + LV ++ + F T+ + + + L
Sbjct: 10 TLSHGSLEHVL---LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE------L 60
Query: 228 IKKFSNKFVPASGFAIGIERLIELIKKI--NINHNFSHQCDI--YIVHVGKEAELKAFVL 283
+ KF +V + + + +++ + + DI + +E +
Sbjct: 61 VGKFLG-YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 284 SENLRT-LGLKVILNCVFNNIHES--FKSQMKRANASNANFAAIIGENEIINNTLIIKDL 340
E ++ + +++ F+ S F++ NA AI G ++ ++L
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRA----VGEGNAQLVAIFGGQGNTDDYF--EEL 173
Query: 341 RNKYED-------------PTLKQISISFKDAENYFYKKI 367
R+ Y+ TL ++ + DAE F + +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Score = 38.5 bits (89), Expect = 0.003
Identities = 36/255 (14%), Positives = 71/255 (27%), Gaps = 107/255 (41%)
Query: 136 LYLNS-----------LRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGI--QKIL-N 181
LY S D+ I +I+IN P L HF G ++I N
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI-------HFGGEKGKRIREN 1687
Query: 182 YNNISYKINT-------KLVRGMDYYNRTV-FEWTTDKLGS-QN---------------- 216
Y+ + ++ K+ + ++ ++ + F L + Q
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 217 ---------------SI-------CGGGRYDF--LIK------KFSNKFVPA-----SGF 241
S+ L++ VP S +
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 242 AI------------GIERLIELIKKIN---------INHNFSHQCDIYIVHVGKEAELKA 280
+ E L +++++ +N+N +Q Y+ G L
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ--QYVA-AGDLRALDT 1864
Query: 281 FVLSENLRTLGLKVI 295
++ L + L+ I
Sbjct: 1865 --VTNVLNFIKLQKI 1877
Score = 35.8 bits (82), Expect = 0.026
Identities = 41/266 (15%), Positives = 83/266 (31%), Gaps = 96/266 (36%)
Query: 137 YLNSLRVL-DSKNLIIREILINAPKLLDYLEKDSLD--HFYGIQKILNYNNISYKINTKL 193
Y LR L + ++++ +++ + + L L + +LD +
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT------------------ 210
Query: 194 VRGMDYYNRTVFEW--TTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERL--- 248
+G++ + EW + D+L+ +P S IG+ +L
Sbjct: 211 -QGLN-----ILEWLENPSNTPDK---------DYLL------SIPISCPLIGVIQLAHY 249
Query: 249 IELIKKININHN--FSHQCDIYIVHVGKEAELKAFVLS-----ENLRTLGLKVI------ 295
+ K + S+ H + + A ++ E+ K I
Sbjct: 250 VVTAKLLGFTPGELRSYLKGA-TGHS--QGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 296 -LNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNT------LIIKDLR------- 341
+ C +E++ N + I E+ + NN L I +L
Sbjct: 307 GVRC-----YEAY---------PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 342 ----NKYEDPTLKQISISFKDAENYF 363
N + P KQ+ IS +
Sbjct: 353 VNKTNSHL-PAGKQVEISLVNGAKNL 377
Score = 31.9 bits (72), Expect = 0.37
Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 61/147 (41%)
Query: 196 GMDYYN-----RTVFEWTTDKLGSQNSICGGGRYDFLI--------KKFSNKFVPASGFA 242
GMD Y + V+ D Y F I + F G
Sbjct: 1632 GMDLYKTSKAAQDVWN-RADNHFKDT-------YGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 243 I--------------GIERLIELIKKININ---HNFSHQCDIYIVHVGKEAELKA----- 280
I G + ++ K+IN + + F + + L A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE----------KGLLSATQFTQ 1733
Query: 281 ---FVLS----ENLRTLGLKVILNCVF 300
++ E+L++ GL + + F
Sbjct: 1734 PALTLMEKAAFEDLKSKGL-IPADATF 1759
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.035
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 228 IKKFSNK---FVPASGFAIGIERLIE 250
+KK + S A+ I+ +E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 31.2 bits (70), Expect = 0.56
Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 12/123 (9%)
Query: 158 APKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNS 217
P L+ L H Y + G R L +
Sbjct: 150 VPWLVGPLLTGDGVHLVKSF----YRRPLNVGDAGGGAGATGGGRVTELVARPLLAALRP 205
Query: 218 ICGGGRYDFL-IKKFSNKFVP----ASGFAIGIERLIELIKKININHNFSHQCDI-YIVH 271
G + + + A G+ + I L++ ++ ++ Q ++ H
Sbjct: 206 ELGCILQPLGGEYAATRELLTSVPFAPGYGVEIGLLVDTFDRLGLDA--IAQVNLGVREH 263
Query: 272 VGK 274
+
Sbjct: 264 RNR 266
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 30.9 bits (70), Expect = 0.73
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 21/56 (37%)
Query: 218 ICGGG----RYDFLIKKFSNK-------------F----VPASGFAIGIERLIELI 252
I G +FL+K+ K F P +G IG+ER+ L
Sbjct: 472 ITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLY 527
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 30.6 bits (70), Expect = 0.78
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 22/62 (35%)
Query: 218 ICGGG----RYDFLIKKFSNK-------------F----VPASGFAIGIERLIELIKKI- 255
I GG R+D L+++ K F P GF +G ERLI+ + +
Sbjct: 362 ISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLP 421
Query: 256 NI 257
NI
Sbjct: 422 NI 423
>1rmv_A Ribgrass mosaic virus coat protein; tobamovirus, RMV cluster, coat
protein (viral), complex (coat protein/RNA), helical
virus; 2.90A {Ribgrass mosaic virus} SCOP: a.24.5.1
Length = 157
Score = 29.6 bits (66), Expect = 1.0
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 28/97 (28%)
Query: 127 WFCEDIKHSLYLNSLRVLDSKNLIIR----------EILINAPKLLDYLEKDSLDHFYGI 176
+ + LY ++ D++N II E+ NA + +D D I
Sbjct: 71 YVNSAVIKPLYEALMKSFDTRNRIIETEEESRPSASEVA-NATQRVD-------DATVAI 122
Query: 177 QKILNYNNISYKINTKLVRGMDYYNRTVFE----WTT 209
+ + + +L G Y NR FE WTT
Sbjct: 123 RSQIQ------LLLNELSNGHGYMNRAEFEAILPWTT 153
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 29.9 bits (68), Expect = 1.3
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 22/57 (38%)
Query: 218 ICGGG----RYDFLIKKFSNK------------------FVPASGFAIGIERLIELI 252
+ GG Y+ ++ K P++G IG+ERL+ I
Sbjct: 216 VASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFI 272
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 29.8 bits (68), Expect = 1.4
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 21/56 (37%)
Query: 218 ICGGG----RYDFLIKKFSNK-------------F----VPASGFAIGIERLIELI 252
I GG RY+ L++ K F P GFAIG ERL + +
Sbjct: 346 ITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKL 401
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 29.5 bits (67), Expect = 1.8
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 21/56 (37%)
Query: 218 ICGGG----RYDFLIKKFSNK-------------F----VPASGFAIGIERLIELI 252
I G + + L + K F P +GF +G+ RL+ ++
Sbjct: 353 IVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVML 408
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 29.2 bits (66), Expect = 2.1
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 23/58 (39%)
Query: 218 ICGGG----RYDFLIKKFSNK---------------F----VPASGFAIGIERLIELI 252
I G + L ++ F P +G IG+ER++
Sbjct: 409 ILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFY 466
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 29.5 bits (66), Expect = 2.2
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 273 GKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQ 310
G E E + L E T+GL +I + V N H + S
Sbjct: 63 GGEKEYRR--LIETAHTIGLGIIQDIVPN--HMAVNSL 96
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 29.1 bits (66), Expect = 2.6
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 21/53 (39%)
Query: 218 ICGGG----RYDFLIKKFSN---------------KF--VPASGFAIGIERLI 249
I GG ++D L K F N + P G+ +G+ER I
Sbjct: 359 IVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFI 411
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 29.1 bits (65), Expect = 2.9
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 306 SFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYF 363
+ + ++K + + + + N I D+ E + + + ++DA Y
Sbjct: 135 TEEEKLKARLITPSQISKLE-AKWRSNKDATINDIDAPEEQEAIPPLLLRYQDAYEYQ 191
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 28.7 bits (65), Expect = 3.1
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 21/53 (39%)
Query: 218 ICGGG----RYDFLIKKFSN---------------KF--VPASGFAIGIERLI 249
I GG YD L+ + ++ VP SGF +G+ERL+
Sbjct: 358 IIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLV 410
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 28.7 bits (65), Expect = 3.3
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 21/53 (39%)
Query: 218 ICGGG----RYDFLIKKFSN---------------KF--VPASGFAIGIERLI 249
I GG YD L+ + K+ P G+ +G+ERL+
Sbjct: 380 IVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLV 432
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 28.7 bits (64), Expect = 3.6
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 266 DIYIV--HVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESF 307
D + H G L + G+KVI++ V N+
Sbjct: 96 DFKQIEEHFGNWTTFDT--LVNDAHQNGIKVIVDFVPNHSTPFK 137
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 27.0 bits (60), Expect = 5.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 104 NFNERKKYCIDLINYIKKHKDSKWF 128
+ KK C +L+N I + +DS+ F
Sbjct: 18 DIQAWKKQCEELLNLIFQCEDSEPF 42
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 28.3 bits (63), Expect = 5.4
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 266 DIYIV--HVGKEAELKAFVLSENLRTLGLKVILNCVFNNI---HESFKSQMK 312
D G ++ + L + G+KVI++ N+ E+ S M+
Sbjct: 100 DFKKPNPFFGTLSDFQR--LVDAAHAKGIKVIIDFAPNHTSPASETNPSYME 149
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 27.9 bits (61), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 273 GKEAELKAFVLSENLRTLGLKVILNCVFN 301
+ E KAFV E LG++VIL+ +
Sbjct: 179 KVDEEFKAFV--EACHILGIRVILDFIPR 205
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 27.9 bits (62), Expect = 6.4
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 271 HVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESF 307
G + LS R G+ +I + V ++I +
Sbjct: 194 RYGSNEDFVR--LSTEARKRGMGLIQDVVLSHIGKHH 228
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics
consortium, SGC, cell cycle progression, signal
transduction, apoptosis; 1.74A {Homo sapiens}
Length = 123
Score = 26.5 bits (59), Expect = 6.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 109 KKYCIDLINYIKKHKDSKWF 128
KK C +L+N I + +DS+ F
Sbjct: 12 KKQCKELVNLIFQCEDSEPF 31
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 27.5 bits (61), Expect = 8.6
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 266 DIYIV--HVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESF 307
D + G + + L +KVI++ N+ +
Sbjct: 105 DFKRTNPYFGSFTDFQN--LINTAHAHNIKVIIDFAPNHTSPAS 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.418
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,838,881
Number of extensions: 358401
Number of successful extensions: 1001
Number of sequences better than 10.0: 1
Number of HSP's gapped: 951
Number of HSP's successfully gapped: 70
Length of query: 373
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 278
Effective length of database: 4,049,298
Effective search space: 1125704844
Effective search space used: 1125704844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)