RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17090
(373 letters)
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 176 bits (446), Expect = 5e-53
Identities = 127/250 (50%), Positives = 177/250 (70%), Gaps = 3/250 (1%)
Query: 9 NGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAI 68
NGD+L+LRPEGTA +R+ IE+ L+Y+ +RLWY GPMFRHERPQ GRYRQF+Q+G E
Sbjct: 71 NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVF 130
Query: 69 GFPGPDIDAELIIMCSRLWKNLNLKNICLEL-NSIGNFNERKKYCIDLINYIKKHKDSKW 127
G GPDIDAELI++ +R W+ L + NSIG+ R Y L+ ++++HK+
Sbjct: 131 GLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHKE--K 188
Query: 128 FCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISY 187
ED K +Y N LRVLDSKN ++ +L +AP L DYL+++S +HF G+ K+L I+Y
Sbjct: 189 LDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAY 248
Query: 188 KINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIER 247
+N +LVRG+DYYNRTVFEW T+ LGSQ ++C GGRYD L+++ + PA GFA+G+ER
Sbjct: 249 TVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLER 308
Query: 248 LIELIKKINI 257
L+ L++ +N
Sbjct: 309 LVLLVQAVNP 318
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 166 bits (420), Expect = 4e-49
Identities = 94/248 (37%), Positives = 149/248 (60%), Gaps = 7/248 (2%)
Query: 16 RPEGTASVIRSVIENNLIYDG--PKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGP 73
RPEGTA+V+RS IE+ + + P +L+Y+GPMFR+ER Q GRYRQF Q GVEAIG P
Sbjct: 78 RPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENP 137
Query: 74 DIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIK 133
+DAE++ M ++++ LK++ L +NS+G+ RK+Y L+ + + FC D +
Sbjct: 138 SVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHE--FCSDCQ 195
Query: 134 HSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKL 193
L+ + +R+LD K +E + AP++ D+L ++S ++ ++ L+ I Y + L
Sbjct: 196 SRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGIPYTEDPNL 255
Query: 194 VRGMDYYNRTVFEWTTDKL---GSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIE 250
VRG+DYY T FE D G+ ++CGGGRY+ L++ GFA+ IERL+
Sbjct: 256 VRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLL 315
Query: 251 LIKKININ 258
+++ I
Sbjct: 316 ALEEEGIE 323
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 161 bits (408), Expect = 2e-47
Identities = 93/258 (36%), Positives = 156/258 (60%), Gaps = 5/258 (1%)
Query: 4 FIDELNGDNLSLRPEGTASVIRSVIENN-LIYDGPKRLWYSGPMFRHERPQYGRYRQFYQ 62
+ G +L+LRPEGTA+++R+ +E+ ++ P RLW +GPMFR ERPQ GRYRQF+Q
Sbjct: 66 TFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQ 125
Query: 63 IGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKH 122
+ EA+G P +DAE +++ K L L+ + ++L+S+G+ +R +Y L + H
Sbjct: 126 VNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPH 185
Query: 123 KDSKWFCEDIKHSLYLNSLRVLDSKNLIIREIL--INAPKLLDYLEKDSLDHFYGIQKIL 180
+++ ED K L N +R+LDSK+ + +L + +LD+L +++ H +++ L
Sbjct: 186 REA--LSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVERHL 243
Query: 181 NYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASG 240
++ Y++ LVRG+DYY RT FE +++G+Q+++ GGGRYD L + VP G
Sbjct: 244 ERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVG 303
Query: 241 FAIGIERLIELIKKININ 258
FA G+ER+ ++
Sbjct: 304 FAFGVERVALALEAEGFG 321
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 144 bits (365), Expect = 2e-41
Identities = 39/250 (15%), Positives = 90/250 (36%), Gaps = 19/250 (7%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
F+D G+ S+R + T +V+ + D ++WY+ ++R+
Sbjct: 37 GNFFLDR-KGNLFSIREDFTKTVLNHRKRYSP--DSQIKVWYADFVYRYSGSDL---VAE 90
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIK 120
YQ+G+E + D E++ + + +E+ G + + K ++
Sbjct: 91 YQLGLEKVPRNSLDDSLEVLEIIVESASEFFEGPVIVEIGHTGVYEDLLKEIPKDLHEKV 150
Query: 121 KHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEK--DSLDHFYGIQK 178
+ +I+ ++ + + + +I I +P+ L ++ +
Sbjct: 151 LNLIDTKNLAEIEFLSHMKKIDLSRVEKIIEDSIYRRSPEHLKTMDLPLSVREDLLSASS 210
Query: 179 ILN--YNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFV 236
L + +S +I+ L R ++ Y +F + GG Y +K
Sbjct: 211 FLQEKFPTVSVEIDLTLARTIEEYCGLIFTIYDTSSS--RLVAAGGEYTVNGEK------ 262
Query: 237 PASGFAIGIE 246
G +I +E
Sbjct: 263 -GVGGSIFLE 271
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 122 bits (305), Expect = 2e-32
Identities = 53/262 (20%), Positives = 106/262 (40%), Gaps = 11/262 (4%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
M+ FI G +++LR + T ++R + R Y G +FR E+ GR +
Sbjct: 63 MFQFIKH-EGQSITLRYDFTLPLVRLYSQIKDST--SARYSYFGKIFRKEKRHKGRSTEN 119
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIK 120
YQIG+E G + E++ + ++ + L L E+ S F + +
Sbjct: 120 YQIGIELFGESADKSELEILSLALQVIEQLGLNKTVFEIGSAKFFQRLCQLADGSTELLT 179
Query: 121 KHKDSKWFCEDIKH---SLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQ 177
+ K + + LR L + I E+ + + + + F ++
Sbjct: 180 ELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFITNELSRLENLVTNTKDDVLISSFDQLK 239
Query: 178 KILNYNNISY--KINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKF 235
+ ++ I+ +V MDYY +F+ + + I GGRYD L+ F +
Sbjct: 240 EFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSS--AANQPILSGGRYDQLLSNFQEE- 296
Query: 236 VPASGFAIGIERLIELIKKINI 257
A GF ++ +++ +++ +
Sbjct: 297 AFAIGFCCHMDTILKALERQEL 318
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 121 bits (303), Expect = 4e-32
Identities = 62/266 (23%), Positives = 111/266 (41%), Gaps = 11/266 (4%)
Query: 1 MYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQF 60
YSF+D+ G ++ + P R + ++R+E PQ GRYR+
Sbjct: 63 TYSFVDK--GGREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREH 120
Query: 61 YQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNIC-LELNSIGNFNERKKYCIDLINYI 119
YQ + G P+ DAE+I + S + L L++I + +NS E +
Sbjct: 121 YQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSDPFS 180
Query: 120 KKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKI 179
++ + + + + + L + + +D + + + I ++
Sbjct: 181 VFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSEEIARM 240
Query: 180 -------LNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFS 232
+Y + + + +VRG+ YY VFE D+ G +I GGGRYD L S
Sbjct: 241 AAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAY-DRSGQFRAILGGGRYDNLASLMS 299
Query: 233 NKFVPASGFAIGIERLIELIKKININ 258
+ VPA GF +G + L+K+ N+
Sbjct: 300 GESVPAVGFGMGDAVISLLLKRENVQ 325
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 99
Score = 60.4 bits (146), Expect = 3e-12
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAA 323
DIY+V G + + A L+E LR V + N+ +FK Q RA+ A A
Sbjct: 3 VVDIYLVASGADTQSAAMALAERLRDELPGV--KLMTNHGGGNFKKQFARADKWGARVAV 60
Query: 324 IIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367
++GE+E+ N T ++KDLR+ +Q +++ + +
Sbjct: 61 VLGESEVANGTAVVKDLRSG------EQTAVAQDSVAAHLRTLL 98
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 55.3 bits (133), Expect = 2e-10
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 264 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAA 323
D++IV +G +A+ A L +LR G+K + + K QMK+A+ A F
Sbjct: 4 NLDLFIVTMGDQADRYAVKLLNHLRHNGIKAD----KDYLQRKIKGQMKQADRLGAKFTI 59
Query: 324 IIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYK 365
+IG+ E+ NN + +K++ + +I YF K
Sbjct: 60 VIGDQELENNKIDVKNMTTG------ESETIELDALVEYFKK 95
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 97
Score = 51.5 bits (123), Expect = 3e-09
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 266 DIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAII 325
+YI VGK S LR G+ V + + +Q+K A+A A+FA I
Sbjct: 5 SVYICRVGKINSSIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIF 60
Query: 326 GENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367
GE ++ + I+++ Q ++ + +
Sbjct: 61 GERDLERGVVTIRNMYTG------SQENVGLDSVVEHLISQA 96
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 96
Score = 51.5 bits (123), Expect = 3e-09
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 266 DIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAII 325
D+Y++ + +EA +AF L+E LR L+ ++ A A FA +
Sbjct: 5 DLYLIPLTEEAVAEAFYLAEALRP-RLRAEYALA----PRKPAKGLEEALKRGAAFAGFL 59
Query: 326 GENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 367
GE+E+ + +K L +Q+ +S ++ Y + +
Sbjct: 60 GEDELRAGEVTLKRLATG------EQVRLSREEVPGYLLQAL 95
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 48.7 bits (115), Expect = 5e-07
Identities = 36/229 (15%), Positives = 65/229 (28%), Gaps = 19/229 (8%)
Query: 33 IYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL 92
+ G R++ P+FR E R+ + F + + + +
Sbjct: 96 MASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYV 155
Query: 93 KNICLELNSIGNFNERK-------KYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLD 145
+ + I NF + + + + EDI + +
Sbjct: 156 REHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMM 215
Query: 146 SKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVF 205
L P D+ I + RG++ +
Sbjct: 216 ENENAPLYFLYQYPSEAKPFYIMKYDNKPEI----------CRAFDLEYRGVEISSGGQR 265
Query: 206 EWTTDKLGSQNSICGGGR--YDFLIKKFSNKFVPASGFAIGIERLIELI 252
E D L Q G ++F +K F P GF +G ERLI+ +
Sbjct: 266 EHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQM 314
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 36.7 bits (84), Expect = 0.003
Identities = 29/223 (13%), Positives = 69/223 (30%), Gaps = 23/223 (10%)
Query: 36 GPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNI 95
G R + FR E + R F Q+ +E D+ + + +++ +
Sbjct: 107 GLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVEL 166
Query: 96 CLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREIL 155
L + ++Y D + ++ W + +L+
Sbjct: 167 PLPFPRLSYEEAMERYGSDKPDLRREGFRFLWVVD----------FPLLEWDEEEEAWTY 216
Query: 156 INAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQ 215
++ P + E L + ++ ++ G++ ++
Sbjct: 217 MHHPFTSPHPEDLPLLEKDPGRVRALAYDL-------VLNGVEVGGGSIRIHDPRLQARV 269
Query: 216 NSICGGGR------YDFLIKKFSNKFVPASGFAIGIERLIELI 252
+ G G + F ++ P G A G++RL+ L+
Sbjct: 270 FRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALM 312
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 36.3 bits (83), Expect = 0.004
Identities = 36/226 (15%), Positives = 65/226 (28%), Gaps = 22/226 (9%)
Query: 32 LIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLN 91
L+ G R + FR E + R +F QI VE P + + + LW +
Sbjct: 95 LMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVK 154
Query: 92 LKNIC-----LELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDS 146
++ + + K D + ED S
Sbjct: 155 GVDLGDFPVMTFAEAERRYGSDKPDLRDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTS 214
Query: 147 KNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFE 206
+ L AP + ++ D ++ G + +
Sbjct: 215 PKDMTAAELKAAP---ENAVANAYDMVINGYEVGG--------------GSVRIHNGDMQ 257
Query: 207 WTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELI 252
T + N ++ FL+ P +G A G++RL L+
Sbjct: 258 QTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLL 303
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 34.4 bits (78), Expect = 0.020
Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 25/239 (10%)
Query: 36 GPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNI 95
G +R++ FR+E +F + + D+ + L + +
Sbjct: 90 GFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTK 149
Query: 96 CLELNSIGNFNE--RKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIRE 153
+ +F + K + I + D S+ + K+ +
Sbjct: 150 VTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGR 209
Query: 154 ILINAPKLLDYLEKDSLDHFYGIQ---KILNYNNISYKINTKLVRGMDYYNRTV------ 204
I+ ++ D + + L I ++ +N ++ +++
Sbjct: 210 IVT---EIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGF 266
Query: 205 -----FEWTTDKLGSQNSICGGG------RYDFLIKKFSNKFVPASGFAIGIERLIELI 252
E ++ Q + G + + P +G IGI+R+I L
Sbjct: 267 SELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLF 325
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 32.4 bits (73), Expect = 0.077
Identities = 30/228 (13%), Positives = 74/228 (32%), Gaps = 10/228 (4%)
Query: 28 IENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLW 87
+ ++ +R++ P++R E R+ Y +GF + D + + L
Sbjct: 71 LYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDL--MRLEEALL 128
Query: 88 KNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSK 147
+ + + + I I + + + E++ + + + +
Sbjct: 129 AEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERL 188
Query: 148 -NLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFE 206
+E + + + + + S+ + L RG++ +
Sbjct: 189 LGEYAKERWGSDWLFVTRYPRSV--RPFYTYPEEDGTTRSFDL---LFRGLEITSGGQRI 243
Query: 207 WTTDKLGSQNSICGGGR--YDFLIKKFSNKFVPASGFAIGIERLIELI 252
++L G + ++ F P GFAIG ERL + +
Sbjct: 244 HRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKL 291
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 32.0 bits (72), Expect = 0.087
Identities = 19/141 (13%), Positives = 33/141 (23%), Gaps = 13/141 (9%)
Query: 4 FIDELNGDNLSLRPEGTASVIRSVIENNLIYDG---PKRLWYSGPMFRHERP------QY 54
F++ L + LR N L P L G F
Sbjct: 104 FLENLLKTSGKLRAT-LLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSV 162
Query: 55 GRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCID 114
R + + + + RL +S +E +
Sbjct: 163 TRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQDELGRKGSK 222
Query: 115 L---INYIKKHKDSKWFCEDI 132
L + K+ ++ W D
Sbjct: 223 LYYSFPWGKEPIETLWNLGDQ 243
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 32.2 bits (73), Expect = 0.11
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 271 HVGKEAELKAFVLSENLRTLGLKVILNCVFN---NIHESFKSQMKRANASNANFA 322
+G E E + + E T+GL +I + V N +++ + +
Sbjct: 61 ELGGEKEYRRLI--ETAHTIGLGIIQDIVPNHMAVNSLNWRLMDVLKMGKKSKYY 113
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 31.4 bits (70), Expect = 0.18
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 223 RYDFLIKKFSNKFVPASGFAIGIERLIELI 252
FS P +G IG+ER++
Sbjct: 303 GLKDYCDGFSYGCPPHAGGGIGLERVVMFY 332
>d1rmva_ a.24.5.1 (A:) Ribgrass mosaic virus {Ribgrass mosaic virus
[TaxId: 51680]}
Length = 156
Score = 29.8 bits (67), Expect = 0.28
Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 193 LVRGMDYYNRTVFE----WTT 209
L G Y NR FE WTT
Sbjct: 132 LSNGHGYMNRAEFEAILPWTT 152
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 110
Score = 28.9 bits (64), Expect = 0.38
Identities = 8/81 (9%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 293 KVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQI 352
+ + +E +++ + + G+ E+ + + ++ R K
Sbjct: 32 NAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGK------DLG 85
Query: 353 SISFKDAENYFYKKIIKNINN 373
S+ + +K+ + I +
Sbjct: 86 SMDVNE----VIEKLQQEIRS 102
>d1wdja_ c.52.1.27 (A:) Hypothetical protein TT1808 (TTHA1514)
{Thermus thermophilus [TaxId: 274]}
Length = 186
Score = 29.1 bits (64), Expect = 0.57
Identities = 8/131 (6%), Positives = 23/131 (17%), Gaps = 9/131 (6%)
Query: 49 HERPQYGR-YRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNE 107
+ Y+ P + + N +
Sbjct: 16 RRLSELNPGYQWERSPEGRLWVSPTGGESGRRSLQLAYQLARWNEERGL-------GVVF 68
Query: 108 RKKYCIDLINYIKKHKDSKWFCEDIKHSLYL-NSLRVLDSKNLIIREILINAPKLLDYLE 166
+ D+ + +L + E+ + +
Sbjct: 69 DSSTGFKFPDGSILSPDAAFVERGAWEALSEAEREGFPPLAPKAVFEVRSASQDPEELRA 128
Query: 167 KDSLDHFYGIQ 177
K + G+
Sbjct: 129 KMGIYLRNGVL 139
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 29.7 bits (66), Expect = 0.57
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 237 PASGFAIGIERLIELI 252
P++G IG+ERL+ I
Sbjct: 256 PSAGAGIGVERLVRFI 271
>d1ei7a_ a.24.5.1 (A:) Tobacco mosaic virus coat protein {Tobacco
mosaic virus, vulgare strain [TaxId: 12242]}
Length = 158
Score = 28.7 bits (64), Expect = 0.66
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 6/23 (26%)
Query: 193 LVRGMDYYNRTVFE------WTT 209
L+RG YNR+ FE WT+
Sbjct: 132 LIRGTGSYNRSSFESSSGLVWTS 154
>d1cgme_ a.24.5.1 (E:) Cucumber green mottle mosaic virus {Cucumber
green mottle mosaic virus, strain watermelon [TaxId:
12235]}
Length = 160
Score = 28.7 bits (64), Expect = 0.82
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 6/23 (26%)
Query: 193 LVRGMDYYNRTVFE------WTT 209
+ +G D Y+R FE W+
Sbjct: 132 ISKGFDVYDRASFEAAFSVVWSE 154
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 339
Score = 27.6 bits (60), Expect = 2.6
Identities = 13/126 (10%), Positives = 32/126 (25%), Gaps = 19/126 (15%)
Query: 245 IERLIELIKKININH----------NFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKV 294
++ + + +N F D V E + +
Sbjct: 41 AADKLKYVLNLGLNTVRLEGHIEPDEFFDIADDLGVLTMPGWECCDK----WEGQVNGEE 96
Query: 295 ILNCVFNNIHESFKSQMKRANASNANFAAIIG---ENEIINNTLIIKDLRN--KYEDPTL 349
+ + K+ M + ++I ++ + I + + K D L
Sbjct: 97 KGEPWVESDYPIAKASMFSEAERLRDHPSVISFHIGSDFAPDRRIEQGYLDAMKAADFLL 156
Query: 350 KQISIS 355
I +
Sbjct: 157 PVIPAA 162
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 26.7 bits (58), Expect = 5.3
Identities = 23/177 (12%), Positives = 51/177 (28%), Gaps = 7/177 (3%)
Query: 31 NLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 90
++ + + +W P R + V F P + S+
Sbjct: 59 HIFHTDNETVWNYVNKHAEMMPYVNRVKATVNGQV----FSLPINLHTINQFFSKTCSPD 114
Query: 91 NLKNICLELN--SIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN 148
+ + E +I + ++ + I K + + + L K
Sbjct: 115 EARALIAEKGDSTIADPQTFEEEALRFIGKELYEAFFKGYTIKQWG-MQPSELPASILKR 173
Query: 149 LIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVF 205
L +R + + + I+ ILN+ NI + + + + VF
Sbjct: 174 LPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHENIKVDLQREFIVEERTHYDHVF 230
>d2cbia2 c.1.8.10 (A:179-495) Hyaluronidase catalytic domain
{Clostridium perfringens [TaxId: 1502]}
Length = 317
Score = 26.4 bits (58), Expect = 6.2
Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 12/89 (13%)
Query: 54 YGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCI 113
+ Y +GV + DI + +++ LN + K +
Sbjct: 100 ITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQV------------LNRFNEEFVKAKGDV 147
Query: 114 DLINYIKKHKDSKWFCEDIKHSLYLNSLR 142
+ + D+ + + Y
Sbjct: 148 KPLITVPTEYDTGAMVSNGQPRAYTRIFA 176
>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea
[TaxId: 489]}
Length = 554
Score = 26.1 bits (56), Expect = 7.7
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 271 HVGKEAELKAFVLSENLRTLGLKVILNCVFN 301
+G +L+ + L G+ +++ +FN
Sbjct: 158 ALGTIGDLREVI--AALHEAGISAVVDFIFN 186
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.418
Gapped
Lambda K H
0.267 0.0451 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,474,926
Number of extensions: 73917
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 40
Length of query: 373
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,213,086
Effective search space: 346942596
Effective search space used: 346942596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)