BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17091
(1250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 181/325 (55%), Positives = 241/325 (74%), Gaps = 7/325 (2%)
Query: 868 GEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHE 927
GE TDIV+KEMYSF+D LNG+NL+LRPE TA+V+R+ IE+N++YDGPKRLWY GPMFRHE
Sbjct: 84 GEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHE 143
Query: 928 RPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKK 987
RPQ GRYRQF+Q+GVEA+GF GPD DAE+++MC RLW++L L I LE+NS+G ER
Sbjct: 144 RPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTGIKLEINSLGLAEERAA 203
Query: 988 YCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSL 1047
+ ++LI Y+++H D +D + LY N LRVLD+KN ++EI+ NAPKL+D+L S
Sbjct: 204 HRVELIKYLEQHADK--LDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSR 261
Query: 1048 DHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKK 1107
HF G+Q++L NN+ + IN +LVRG+DYYN TVFEW TDKLG+Q ++ GGRYD LI++
Sbjct: 262 AHFEGLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQ 321
Query: 1108 FSNKFVPASGFAIGIERLIELIKKININHNFSHQ--CDIYIVHVGKEAELKAFVLSENLR 1165
K A G+A+GIER++EL+K+ H Q D+Y+VH G A +AF+++E LR
Sbjct: 322 LGGKPTAACGWAMGIERILELLKE---EHLVPEQEGVDVYVVHQGDAAREQAFIVAERLR 378
Query: 1166 TLGLKVILNCVFNNIHESFKSQMKR 1190
GL VIL+C + SFKSQMKR
Sbjct: 379 DTGLDVILHCSADGAGASFKSQMKR 403
>pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
Length = 404
Score = 336 bits (861), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 167/370 (45%), Positives = 240/370 (64%), Gaps = 16/370 (4%)
Query: 535 ELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTR 594
+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT
Sbjct: 34 DLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTI 93
Query: 595 KWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLW 654
KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W
Sbjct: 94 KWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 153
Query: 655 VTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRH 713
R K + G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R
Sbjct: 154 ------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRR 207
Query: 714 VILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITY 773
V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+
Sbjct: 208 VTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEK 267
Query: 774 SPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSK 831
S + +T EY ML +ND HA +L L++ T CKINLIP+N FP + S
Sbjct: 268 SNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINLIPWNPFPGAPYGRSS 323
Query: 832 NSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLS 891
NSRI F+K+LM+ G +RK RG+DI+AACGQL+G D++ + + + G+ +
Sbjct: 324 NSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAG---DVIDRTKRTLRKRMQGEAID 380
Query: 892 LRPEGTASVI 901
++ G +S +
Sbjct: 381 IKAVGNSSSV 390
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 333 bits (853), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 166/368 (45%), Positives = 233/368 (63%), Gaps = 11/368 (2%)
Query: 868 GEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHE 927
GE TD+V+KEMY+F D NGD+L+LRPEGTA +R+ IE+ L+Y+ +RLWY GPMFRHE
Sbjct: 56 GEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHE 114
Query: 928 RPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL-KNICLELNSIGNFNERK 986
RPQ GRYRQF+Q+G E G GPDIDAELI++ +R W+ L + +++ LELNSIG+ R
Sbjct: 115 RPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARA 174
Query: 987 KYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDS 1046
Y L+ ++++HK+ ED K +Y N LRVLDSKN ++ +L +AP L DYL+++S
Sbjct: 175 NYRDALVAFLEQHKEK--LDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEES 232
Query: 1047 LDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIK 1106
+HF G+ K+L I+Y +N +LVRG+DYYNRTVFEW T+ LGSQ ++C GGRYD L++
Sbjct: 233 REHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVE 292
Query: 1107 KFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRT 1166
+ + PA GFA+G+ERL+ L++ +N DIY+V G + + A L+E LR
Sbjct: 293 QLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRD 352
Query: 1167 --LGLKVILNCVFNNIHESFKSQMKRXXXXXXXXXXXXXXXXXXXXXXXXKDLRNKYEDP 1224
G+K++ N N FK Q R KDLR+ E
Sbjct: 353 ELPGVKLMTNHGGGN----FKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSG-EQT 407
Query: 1225 TLKQISIS 1232
+ Q S++
Sbjct: 408 AVAQDSVA 415
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 333 bits (853), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/368 (45%), Positives = 233/368 (63%), Gaps = 11/368 (2%)
Query: 868 GEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHE 927
GE TD+V+KEMY+F D NGD+L+LRPEGTA +R+ IE+ L+Y+ +RLWY GPMFRHE
Sbjct: 64 GEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHE 122
Query: 928 RPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL-KNICLELNSIGNFNERK 986
RPQ GRYRQF+Q+G E G GPDIDAELI++ +R W+ L + +++ LELNSIG+ R
Sbjct: 123 RPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARA 182
Query: 987 KYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDS 1046
Y L+ ++++HK+ ED K +Y N LRVLDSKN ++ +L +AP L DYL+++S
Sbjct: 183 NYRDALVAFLEQHKEK--LDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEES 240
Query: 1047 LDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIK 1106
+HF G+ K+L I+Y +N +LVRG+DYYNRTVFEW T+ LGSQ ++C GGRYD L++
Sbjct: 241 REHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVE 300
Query: 1107 KFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRT 1166
+ + PA GFA+G+ERL+ L++ +N DIY+V G + + A L+E LR
Sbjct: 301 QLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRD 360
Query: 1167 --LGLKVILNCVFNNIHESFKSQMKRXXXXXXXXXXXXXXXXXXXXXXXXKDLRNKYEDP 1224
G+K++ N N FK Q R KDLR+ E
Sbjct: 361 ELPGVKLMTNHGGGN----FKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSG-EQT 415
Query: 1225 TLKQISIS 1232
+ Q S++
Sbjct: 416 AVAQDSVA 423
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 333 bits (853), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/368 (45%), Positives = 233/368 (63%), Gaps = 11/368 (2%)
Query: 868 GEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHE 927
GE TD+V+KEMY+F D NGD+L+LRPEGTA +R+ IE+ L+Y+ +RLWY GPMFRHE
Sbjct: 57 GEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHE 115
Query: 928 RPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL-KNICLELNSIGNFNERK 986
RPQ GRYRQF+Q+G E G GPDIDAELI++ +R W+ L + +++ LELNSIG+ R
Sbjct: 116 RPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARA 175
Query: 987 KYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDS 1046
Y L+ ++++HK+ ED K +Y N LRVLDSKN ++ +L +AP L DYL+++S
Sbjct: 176 NYRDALVAFLEQHKEK--LDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEES 233
Query: 1047 LDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIK 1106
+HF G+ K+L I+Y +N +LVRG+DYYNRTVFEW T+ LGSQ ++C GGRYD L++
Sbjct: 234 REHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVE 293
Query: 1107 KFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRT 1166
+ + PA GFA+G+ERL+ L++ +N DIY+V G + + A L+E LR
Sbjct: 294 QLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRD 353
Query: 1167 --LGLKVILNCVFNNIHESFKSQMKRXXXXXXXXXXXXXXXXXXXXXXXXKDLRNKYEDP 1224
G+K++ N N FK Q R KDLR+ E
Sbjct: 354 ELPGVKLMTNHGGGN----FKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSG-EQT 408
Query: 1225 TLKQISIS 1232
+ Q S++
Sbjct: 409 AVAQDSVA 416
>pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
Length = 404
Score = 332 bits (850), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 166/370 (44%), Positives = 239/370 (64%), Gaps = 16/370 (4%)
Query: 535 ELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTR 594
+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT
Sbjct: 34 DLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTI 93
Query: 595 KWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLW 654
KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W
Sbjct: 94 KWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 153
Query: 655 VTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRH 713
R K + G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R
Sbjct: 154 ------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRR 207
Query: 714 VILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITY 773
V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+
Sbjct: 208 VTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEK 267
Query: 774 SPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSK 831
S + +T EY ML +ND HA +L L++ T CKINLIP+N FP + S
Sbjct: 268 SNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINLIPWNPFPGAPYGRSS 323
Query: 832 NSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLS 891
NSRI F+K+LM+ G +RK RG+DI+AA GQL+G D++ + + + G+ +
Sbjct: 324 NSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAXGQLAG---DVIDRTKRTLRKRMQGEAID 380
Query: 892 LRPEGTASVI 901
++ G +S +
Sbjct: 381 IKAVGNSSSV 390
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 249 bits (635), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 141/438 (32%), Positives = 234/438 (53%), Gaps = 28/438 (6%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF- 60
KPV+ +VGRPNVGKST+FNR+ R ++V + PG+TRDR Y F +IDTGG
Sbjct: 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID 82
Query: 61 ---EPEVKKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVL- 116
EP + ++ +Q + A V+GR+G+ D+ + L ++ +P+VL
Sbjct: 83 IGDEP-----FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLA 137
Query: 117 VXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTN 176
V DFY LG G P+ IS +G G+ + L+ + + F N
Sbjct: 138 VNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV------------AEHFKN 185
Query: 177 IHSIEY----IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY 232
I +Y I+ ++G+PNVGKS+L+N++LGE RVI + GTTRD++ + F YN +++
Sbjct: 186 IPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEF 245
Query: 233 ILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES 292
+++DTAG+R++ K +E EK+SV++ LK+I + VV ++LD ++ I QD IA + +E+
Sbjct: 246 VIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA 305
Query: 293 GRSLIVCVNKWDSXXXXXXXXXXXXXXXXX--XFLSFAMFNFISAIKLNNINSFMESINH 350
G+++++ VNKWD+ FL +A F+SA+ I++ M +I
Sbjct: 306 GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 365
Query: 351 VYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYI 410
++ + + T+ + ++ A+ +P R K+ YA Q PP V+ N + +
Sbjct: 366 ASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELM 425
Query: 411 GNDYKRYLEKYFYRTFSL 428
Y+R+LE F
Sbjct: 426 HFSYERFLENRIRDAFGF 443
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 241 bits (614), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/438 (32%), Positives = 232/438 (52%), Gaps = 28/438 (6%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF- 60
KPV+ +VGRPNVGKST+FNR+ R ++V + PG+TRDR Y F +IDTGG
Sbjct: 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID 62
Query: 61 ---EPEVKKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVL- 116
EP + ++ +Q + A V+GR+G+ D+ + L ++ +P+VL
Sbjct: 63 IGDEP-----FLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRTKKPVVLA 117
Query: 117 VXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTN 176
V DFY LG G P+ IS +G G+ + L+ + + F N
Sbjct: 118 VNKLDNTEXRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV------------AEHFKN 165
Query: 177 IHSIEY----IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY 232
I +Y I+ ++G+PNVGKS+L+N+ LGE RVI + GTTRD++ + F YN +++
Sbjct: 166 IPETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEF 225
Query: 233 ILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES 292
+++DTAG R++ K +E EK+SV++ LK+I + VV ++LD ++ I QD IA + +E+
Sbjct: 226 VIVDTAGXRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA 285
Query: 293 GRSLIVCVNKWDSXXXXXXXXXXXXXXXXX--XFLSFAMFNFISAIKLNNINSFMESINH 350
G+++++ VNKWD+ FL +A F SA+ I++ +I
Sbjct: 286 GKAVVIVVNKWDAVDKDESTXKEFEENIRDHFQFLDYAPILFXSALTKKRIHTLXPAIIK 345
Query: 351 VYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYI 410
++ + + T+ + + A+ +P R K+ YA Q PP V+ N +
Sbjct: 346 ASENHSLRVQTNVLNDVIXDAVAXNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELX 405
Query: 411 GNDYKRYLEKYFYRTFSL 428
Y+R+LE F
Sbjct: 406 HFSYERFLENRIRDAFGF 423
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 229 bits (583), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 188/303 (62%), Gaps = 10/303 (3%)
Query: 868 GEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IYDGPKRLWYSGPMFRH 926
G TDIV+KEM++F D G +L+LRPEGTA+++R+ +E+ + ++ P RLW +GPMFR
Sbjct: 55 GAATDIVRKEMFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRA 113
Query: 927 ERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERK 986
ERPQ GRYRQF+Q+ EA+G P +DAE +++ K L L+ + ++L+S+G+ +R
Sbjct: 114 ERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRA 173
Query: 987 KYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN----LIIREILINAPKLLDYL 1042
+Y L + H+++ ED K L N +R+LDSK+ +++E+ + +LD+L
Sbjct: 174 RYNAYLREVLSPHREA--LSEDSKERLEENPMRILDSKSERDQALLKELGVR--PMLDFL 229
Query: 1043 EKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYD 1102
+++ H +++ L ++ Y++ LVRG+DYY RT FE +++G+Q+++ GGGRYD
Sbjct: 230 GEEARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYD 289
Query: 1103 FLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSE 1162
L + VP GFA G+ER+ ++ D+Y++ + +EA +AF L+E
Sbjct: 290 GLSELLGGPRVPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAE 349
Query: 1163 NLR 1165
LR
Sbjct: 350 ALR 352
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna Synthetase
Length = 420
Score = 206 bits (523), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 199/331 (60%), Gaps = 18/331 (5%)
Query: 868 GEETDIVKKEMYSFIDELNGD-NLSLRPEGTASVIRSVIENNLI--YDGPKRLWYSGPMF 924
G+ TD+V+KEMY+F D+ GD +++LRPEGTA+V+RS IE+ + + P +L+Y+GPMF
Sbjct: 54 GDSTDVVQKEMYTFKDK--GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMF 111
Query: 925 RHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNE 984
R+ER Q GRYRQF Q GVEAIG P +DAE++ M ++++ LK++ L +NS+G+
Sbjct: 112 RYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMAS 171
Query: 985 RKKYCIDLINYIKK--HKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYL 1042
RK+Y L+ + + H+ FC D + L+ + +R+LD K +E + AP++ D+L
Sbjct: 172 RKEYNEALVKHFEPVIHE----FCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFL 227
Query: 1043 EKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKL---GSQNSICGGG 1099
++S ++ ++ L+ I Y + LVRG+DYY T FE D G+ ++CGGG
Sbjct: 228 NEESKAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGG 287
Query: 1100 RYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFV 1159
RY+ L++ GFA+ IERL+ +++ I + D++IV +G +A+ A
Sbjct: 288 RYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVK 347
Query: 1160 LSENLRTLGLKVILNCVFNNIHESFKSQMKR 1190
L +LR G+K + + I K QMK+
Sbjct: 348 LLNHLRHNGIKADKDYLQRKI----KGQMKQ 374
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 207/425 (48%), Gaps = 20/425 (4%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++VGRPNVGKSTLFN+L + A+V + G+TRD K+F ++DT G
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLVXXXXX-- 122
+ I + + T VDG++G+ ++D+ + +FLRKS +LV
Sbjct: 64 QDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123
Query: 123 -XXXXXXXLDFYELGIGNPHIISALYGNGIKNFLENILT-IELPYKKFFKKKEFTNIHSI 180
+ Y LG G P +SA + + LE I+ +E K E T+
Sbjct: 124 REFEREVKPELYSLGFGEPIPVSAEHNINLDTXLETIIKKLEEKGLDLESKPEITDA--- 180
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
IKVAIVG+PNVGKSTL N++L + R + PGTTRD + + +KY+ +DTAG+
Sbjct: 181 --IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238
Query: 241 RRRNKTF-EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVC 299
RR+++ +EK+S + + SI +A+VV+++LDA Q I+ QD A GR+ +V
Sbjct: 239 RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRXAGLXERRGRASVVV 298
Query: 300 VNKWD--SXXXXXXXXXXXXXXXXXXFLSFAMFNFISAIKLNNINSFMESINHVYDSSII 357
NKWD F+ ++ F SA K NI+ +++ N Y S
Sbjct: 299 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRXIDAXNLAYASYTT 358
Query: 358 HLSTSRITRAL--ISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYIGNDYK 415
+ +S I AL + A N P K+ + Q PP + N ++ + N K
Sbjct: 359 KVPSSAINSALQKVLAFTNLPRGL------KIFFGVQVDIKPPTFLFFVNSIEKVKNPQK 412
Query: 416 RYLEK 420
+L K
Sbjct: 413 IFLRK 417
>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4DUT|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4EK2|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4EK2|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4HR2|A Chain A, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
pdb|4HR2|B Chain B, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
Length = 145
Score = 160 bits (404), Expect = 6e-39, Method: Composition-based stats.
Identities = 76/113 (67%), Positives = 91/113 (80%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT S+I DA+ KN++G+IY+R+E GLKI+AA M LS+ D EKFY++H RPFFK+LV
Sbjct: 9 RTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLV 68
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
FMISGPV IQVLEGEDAI K+R L+G TDP KA KGTIRADFA+SID N VH
Sbjct: 69 EFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVH 121
>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|I Chain I, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|J Chain J, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|K Chain K, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|L Chain L, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|M Chain M, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|N Chain N, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|O Chain O, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|P Chain P, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 139 bits (349), Expect = 1e-32, Method: Composition-based stats.
Identities = 67/113 (59%), Positives = 86/113 (76%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT S+I DA+ KN++GEI +R+EK GLKI+AA M +LS+ E FY+ HK RPFF +LV
Sbjct: 5 RTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDLV 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
FM SGPV +QVLEGE+AI +R L+G T+P +A GTIRAD+A+SID N VH
Sbjct: 65 GFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVH 117
>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGS|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|C Chain C, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|D Chain D, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|E Chain E, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 139 bits (349), Expect = 1e-32, Method: Composition-based stats.
Identities = 67/113 (59%), Positives = 86/113 (76%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT S+I DA+ KN++GEI +R+EK GLKI+AA M +LS+ E FY+ HK RPFF +LV
Sbjct: 5 RTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDLV 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
FM SGPV +QVLEGE+AI +R L+G T+P +A GTIRAD+A+SID N VH
Sbjct: 65 GFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVH 117
>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|2NCK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
Length = 144
Score = 132 bits (331), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/113 (55%), Positives = 86/113 (76%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT S+I D LEK ++G+I +R+E+ GLK +A ++ LS+ E FY++HK RPFFK+LV
Sbjct: 4 RTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLV 63
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
FMISGPV + VLEGE+A+ +R ++G T+P +AA+GTIR DFA SIDKN VH
Sbjct: 64 QFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVH 116
>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|B Chain B, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|C Chain C, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|D Chain D, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
Length = 140
Score = 128 bits (322), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/113 (55%), Positives = 84/113 (74%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
+T S+I DA++K ++G+I +R+E GL+I A +LSK E FY++HK RPFFK+LV
Sbjct: 6 KTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLV 65
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
FMISGPV + +LEGE A+ K+R L+G T+P +A GTIRADFAESID N VH
Sbjct: 66 EFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVH 118
>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|B Chain B, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|C Chain C, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|D Chain D, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|E Chain E, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|F Chain F, Escherichia Coli Nucleoside Diphosphate Kinase
Length = 142
Score = 116 bits (291), Expect = 7e-26, Method: Composition-based stats.
Identities = 52/113 (46%), Positives = 76/113 (67%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTFS+I +A+ KN++G I+ R+E G KI+ M L+ FY+ H +PFF LV
Sbjct: 4 RTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLV 63
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
FM SGP+ + VLEGE+A+++HR L+G T+P A GT+RAD+A+S+ +N H
Sbjct: 64 EFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTH 116
>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
Length = 174
Score = 105 bits (262), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/113 (38%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF ++ D +++ ++G+I +R+E GLK++ ++ + E+ Y H+++PFF LV
Sbjct: 26 RTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFDGLV 85
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
+F+ SGPVF V EG+DA ++ R ++G+TDP ++A GTIR D+ + +N++H
Sbjct: 86 DFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGDYGLDLGRNVIH 138
>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q86|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q86|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q89|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q8U|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8V|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8Y|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
Length = 157
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 87/142 (61%), Gaps = 2/142 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF +I DA+++N++GE+ +R E+ GLK++ + ++ E Y H+ +PF+ +L+
Sbjct: 3 RTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLI 62
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+F+ S PVF V+EGEDA+ R +IG T+P +A+ G+IR D ++ +NI+H +
Sbjct: 63 SFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLES 122
Query: 542 RAKQLQKWIHKFGVSDFNKMTD 563
+++ W ++ ++ + D
Sbjct: 123 AEREINLWFNENEITSYASPRD 144
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 142/296 (47%), Gaps = 21/296 (7%)
Query: 867 SGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGP-MFR 925
SGEE + ++ YSF+D+ G ++L PE T S +R V + P R WYS P ++R
Sbjct: 57 SGEE---LLQQTYSFVDK-GGREVTLIPEATPSTVRXVTSRKDL-QRPLR-WYSFPKVWR 110
Query: 926 HERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNIC-LELNS------ 978
+E PQ GRYR+ YQ + G P+ DAE+I + S + L L++I + +NS
Sbjct: 111 YEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRINSRKIXEE 170
Query: 979 -IGNFNERKKYCI-DLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAP 1036
IG + + +I+ + HK S+ D S + V +L I+
Sbjct: 171 IIGGXTSSDPFSVFSIID--RYHKISREEFVDQLRSAGIGEDGVSXIADLCSGTRGIDEX 228
Query: 1037 KLLDYLEKDSLDHFYGIQKIL-NYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSI 1095
+ + + ++ +L +Y + + + +VRG+ YY VFE D+ G +I
Sbjct: 229 ARITGKSSEEIARXAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFE-AYDRSGQFRAI 287
Query: 1096 CGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGK 1151
GGGRYD L S + VPA GF G + L+K+ N+ + +YI VGK
Sbjct: 288 LGGGRYDNLASLXSGESVPAVGFGXGDAVISLLLKRENVQIPREKKS-VYICRVGK 342
>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
Length = 156
Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/128 (39%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT+ ++ D +++ ++GEI R+E GLK+IAA + + + V + Y HK++PFFK+L
Sbjct: 11 RTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLC 70
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+F+ GPVF + EG +AIK R L+G T P+++A GTIR DF + NIVH
Sbjct: 71 DFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSAED 130
Query: 542 RAKQLQKW 549
A++ W
Sbjct: 131 AARECALW 138
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKJ|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKK|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKK|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKL|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
pdb|1WKL|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
Length = 137
Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF +I D + + +VGEI R+E+ G +I A + ++S+ E+ Y+ H+ +PFF LV
Sbjct: 3 RTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLV 62
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
F+ SGPV VLEG + + R ++G T P A GTIR DFA +ID+N++H
Sbjct: 63 RFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIH 115
>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Giardia Lamblia Featuring A Disordered Dinucleotide
Binding Site
Length = 155
Score = 100 bits (248), Expect = 7e-21, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF ++ D +++ +VGEI +R+E+ G K++A SKN VE+ Y H RPFF L
Sbjct: 9 RTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLC 68
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
F+ SGPV V EG + + R ++G T P ++A GTIR DF + +NI+H +
Sbjct: 69 KFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDD 128
Query: 542 RAKQLQKW 549
A+++ W
Sbjct: 129 AAREIALW 136
>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
pdb|3B54|B Chain B, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
Length = 161
Score = 98.2 bits (243), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D +++ +V +I +R+EK G K++A + K +E+ Y+ H +PFF +V
Sbjct: 15 RTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMV 74
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+FM SGP+ V EG+D +++ R ++G T+P+ +A GTIR DF + +N+ H +
Sbjct: 75 SFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDS 134
Query: 542 RAKQLQKWIHKFGVSDF 558
+++ W K + D+
Sbjct: 135 AEREINLWFKKEELVDW 151
>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1
pdb|3L7U|B Chain B, Crystal Structure Of Human Nm23-H1
pdb|3L7U|C Chain C, Crystal Structure Of Human Nm23-H1
Length = 172
Score = 97.8 bits (242), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF I D +++ +VGEI R+E+ G +++ + S++ +++ Y K+RPFF LV
Sbjct: 26 RTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLV 85
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+M SGPV V EG + +K R+++G+T+P + GTIR DF + +NI+H +
Sbjct: 86 KYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVES 145
Query: 542 RAKQLQKWIHKFGVSDF 558
K++ W H + D+
Sbjct: 146 AEKEIGLWFHPEELVDY 162
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|B Chain B, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|C Chain C, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|D Chain D, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|E Chain E, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|F Chain F, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|2HVD|A Chain A, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|B Chain B, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|C Chain C, Human Nucleoside Diphosphate Kinase A Complexed With Adp
Length = 152
Score = 97.8 bits (242), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF I D +++ +VGEI R+E+ G +++ + S++ +++ Y K+RPFF LV
Sbjct: 6 RTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLV 65
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+M SGPV V EG + +K R+++G+T+P + GTIR DF + +NI+H +
Sbjct: 66 KYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVES 125
Query: 542 RAKQLQKWIHKFGVSDF 558
K++ W H + D+
Sbjct: 126 AEKEIGLWFHPEELVDY 142
>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|B Chain B, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|C Chain C, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
Length = 152
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF I D +++ +VGEI R+E+ G +++ + S++ +++ Y K+RPFF LV
Sbjct: 6 RTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLV 65
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+M SGPV V EG + +K R+++G+T+P + GTIR DF + +NI+H +
Sbjct: 66 KYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGGDSVES 125
Query: 542 RAKQLQKWIHKFGVSDF 558
K++ W H + D+
Sbjct: 126 AEKEIGLWFHPEELVDY 142
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|B Chain B, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|C Chain C, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|D Chain D, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|E Chain E, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|F Chain F, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
Length = 152
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF I D +++ ++GEI R+E+ G +++A + S++ +++ Y K+RPFF LV
Sbjct: 6 RTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLV 65
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+M SGPV V EG + +K R+++G+T+P + GTIR DF + +NI+H +
Sbjct: 66 KYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVES 125
Query: 542 RAKQLQKWIH 551
K++ W H
Sbjct: 126 AEKEIALWFH 135
>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis
Length = 148
Score = 97.4 bits (241), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
+TF ++ D +++ +GEI R+EK G +++ A + +++ + Y+ H+ +PFF LV
Sbjct: 3 KTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELV 62
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+F+ SGPVF V +GE + R ++G T P +AA GTIR DF ++ KNI+H +
Sbjct: 63 DFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLES 122
Query: 542 RAKQLQKWIHKFGVSDFNKMTD 563
+++ + + + D++K+ +
Sbjct: 123 AEREIGIFFKEEELVDYSKLMN 144
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside
Diphosphate Kinase
Length = 155
Score = 96.7 bits (239), Expect = 8e-20, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 10 RTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 69
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+F+ SGPV V EG+ + R++IG T+P+ +A G+IR DF + +NI+H +
Sbjct: 70 SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVES 129
Query: 542 RAKQLQKW 549
+++ W
Sbjct: 130 ANREIALW 137
>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1NDP|B Chain B, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1KDN|A Chain A, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|B Chain B, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|C Chain C, Structure Of Nucleoside Diphosphate Kinase
pdb|2BEF|A Chain A, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|B Chain B, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|C Chain C, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|1BUX|A Chain A, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|B Chain B, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|C Chain C, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|A Chain A, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|B Chain B, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|C Chain C, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|D Chain D, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|E Chain E, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|F Chain F, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1F6T|A Chain A, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|B Chain B, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|C Chain C, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1HIY|A Chain A, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|B Chain B, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|C Chain C, Binding Of Nucleotides To Ndp Kinase
pdb|1S5Z|A Chain A, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|B Chain B, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|C Chain C, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|D Chain D, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|E Chain E, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|F Chain F, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1NDC|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Complexed
With Dtdp And Mg2+ At 2 A Resolution
Length = 155
Score = 96.3 bits (238), Expect = 9e-20, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 10 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 69
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+F+ SGPV V EG+ + R++IG T+P+ +A G+IR DF + +NI+H +
Sbjct: 70 SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVES 129
Query: 542 RAKQLQKW 549
+++ W
Sbjct: 130 ANREIALW 137
>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside
Diphosphate Kinase At 1,8 Angstroms Resolution
Length = 154
Score = 96.3 bits (238), Expect = 9e-20, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 9 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 68
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+F+ SGPV V EG+ + R++IG T+P+ +A G+IR DF + +NI+H +
Sbjct: 69 SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVES 128
Query: 542 RAKQLQKW 549
+++ W
Sbjct: 129 ANREIALW 136
>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric Nucleoside,
Diphosphate Kinases
Length = 150
Score = 96.3 bits (238), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 5 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+F+ SGPV V EG+ + R++IG T+P+ +A G+IR DF + +NI+H +
Sbjct: 65 SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAGGSIRGDFGVDVGRNIIHGSDSVES 124
Query: 542 RAKQLQKW 549
+++ W
Sbjct: 125 ANREIALW 132
>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|B Chain B, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|C Chain C, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|D Chain D, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|E Chain E, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|F Chain F, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
Length = 157
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 11/139 (7%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
++F +I D +++ +VG I R+EK G K+IA M ++ +++ Y ++PFFKNLV
Sbjct: 11 KSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLV 70
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMP- 540
++ GPV V EG D +K+ R LIG+T+P+ + GTIR DF + KN++H +
Sbjct: 71 AYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVAS 130
Query: 541 --------FRAKQLQKWIH 551
F+A++L +W H
Sbjct: 131 ANKEINIWFKAEELTQWKH 149
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|B Chain B, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|C Chain C, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|D Chain D, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|E Chain E, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|F Chain F, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|G Chain G, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|H Chain H, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTO|A Chain A, Orthorhombic Crystal Form C222 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|A Chain A, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|C Chain C, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTR|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTS|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
Length = 142
Score = 95.5 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT ++ DA+EK +G+I +R+ + G +I A M + + +FY +H+ RPFF+ LV
Sbjct: 5 RTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELV 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAK---GTIRADFAESIDKNIVH 534
FM SGPV VLEGEDAIK+ R +IG TD +A K +IRA F KN +H
Sbjct: 65 EFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIH 120
>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
Length = 181
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/113 (38%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF ++ D +++ ++G+I R E GLK++ ++ + + Y+ H+++PFF LV
Sbjct: 27 RTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLV 86
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
+F+ SGPVF V EG DA ++ R L+G TD AA GTIR D+ + N++H
Sbjct: 87 SFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIH 139
>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|G Chain G, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|H Chain H, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|I Chain I, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
Length = 164
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/113 (38%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF ++ D +++ ++G+I R E GLK++ ++ + + Y+ H+++PFF LV
Sbjct: 10 RTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLV 69
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
+F+ SGPVF V EG DA ++ R L+G TD AA GTIR D+ + N++H
Sbjct: 70 SFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIH 122
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|B Chain B, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|C Chain C, The Awd Nucleotide Diphosphate Kinase From Drosophila
Length = 153
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF ++ D +++ +VG+I R+E+ G K++A SK +EK Y+ RPFF LV
Sbjct: 7 RTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLV 66
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
N+M SGPV V EG + +K R ++G T+P + GTIR DF + +NI+H +
Sbjct: 67 NYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVES 126
Query: 542 RAKQLQKWIHK 552
K++ W ++
Sbjct: 127 AEKEIALWFNE 137
>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|L Chain L, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|T Chain T, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|U Chain U, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|N Chain N, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|O Chain O, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
Length = 152
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF I D +++ +VGEI R+E+ G +++A + S+ +++ Y K+RPFF LV
Sbjct: 6 RTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLV 65
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+M SGPV V EG + +K R+++G+T+P + GTIR DF + +NI+H +
Sbjct: 66 KYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKS 125
Query: 542 RAKQLQKWIHKFGVSDF 558
K++ W + D+
Sbjct: 126 AEKEISLWFKPEELVDY 142
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 94.7 bits (234), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V+VGRPNVGKS+LFNRL R A+VA+ PG+TRD G + F+++DTGG
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLVXXXXXXX 124
K ++ ++ +A VDGR L + D + +LR+ G+P++LV
Sbjct: 64 K--WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121
Query: 125 XXXXXLD-FYELGIGNPHIISALYGNGIKNFLENI 158
L Y LG G+P S+ + G++ LE I
Sbjct: 122 KHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAI 156
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
KV IVG+PNVGKS+L N LL + + D PG TRD + + E + +++L+DT G+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKW 303
+K + I++ K +++ +A VV+ +D + ++ D +A ++ G+ +I+ K
Sbjct: 63 DKWEKKIQE----KVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKV 118
Query: 304 D 304
D
Sbjct: 119 D 119
>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|B Chain B, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|C Chain C, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|D Chain D, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|E Chain E, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|F Chain F, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|3BBB|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBF|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
Length = 151
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF I D +++ +VGEI R+E+ G +++A + S+ +++ Y K+RPFF LV
Sbjct: 5 RTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLV 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+M SGPV V EG + +K R+++G+T+P + GTIR DF + +NI+H +
Sbjct: 65 KYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKS 124
Query: 542 RAKQLQKWIHKFGVSDF 558
K++ W + D+
Sbjct: 125 AEKEISLWFKPEELVDY 141
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3DDI|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3ENA|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ENA|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ETM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3ETM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3EVM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3EVM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3FCV|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3FCV|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3DKD|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
pdb|3DKD|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
Length = 146
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 417 YLEKYFYRTFSLI--DALEKNIVGEIYNRYEKIGLKIIA-AYMKKLSKNDVEKFYSIHKN 473
Y + RT LI DA E+++V EI R EK KI++ + K +N +E+ Y H
Sbjct: 1 YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
Query: 474 RPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+ +F +L +FM+SGP+ V EG DAI K R L G+T+P+ +A GTIR D A I +N++
Sbjct: 61 QSYFNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIGENLI 120
Query: 534 H 534
H
Sbjct: 121 H 121
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 417 YLEKYFYRTFSLI--DALEKNIVGEIYNRYEKIGLKIIA-AYMKKLSKNDVEKFYSIHKN 473
Y + RT LI DA E+++V EI R EK KI++ + K +N +E+ Y H
Sbjct: 1 YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
Query: 474 RPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+ +F +L +FM+SGP+ V EG DAI K R L G+T+P+ +A GTIR D A I +N++
Sbjct: 61 QSYFNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLI 120
Query: 534 H 534
H
Sbjct: 121 H 121
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|B Chain B, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|D Chain D, Structure Of Human Nucleoside-diphosphate Kinase 3
Length = 169
Score = 93.6 bits (231), Expect = 6e-19, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D +++ +VGEI R+E+ G K++A + + S+ + + Y+ + RPF+ LV
Sbjct: 23 RTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLV 82
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+M SGPV V +G D ++ R LIG T+P A GTIR DF + KN++H +
Sbjct: 83 KYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVES 142
Query: 542 RAKQLQKW 549
+++ W
Sbjct: 143 ARREIALW 150
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|B Chain B, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|C Chain C, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
Length = 151
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF I D +++ ++GEI R+E+ G +++A + S++ +++ Y K+RPFF LV
Sbjct: 5 RTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLV 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+M SGPV V EG + +K R+++G+T+P + GTIR DF + +NI+H +
Sbjct: 65 KYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVES 124
Query: 542 RAKQLQKW 549
K++ W
Sbjct: 125 AEKEIALW 132
>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|B Chain B, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|C Chain C, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
Length = 155
Score = 93.6 bits (231), Expect = 7e-19, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 10 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 69
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+F+ SGPV V EG+ + R++IG T+P+ +A G+IR DF + + I+H +
Sbjct: 70 SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRAIIHGSDSVES 129
Query: 542 RAKQLQKW 549
+++ W
Sbjct: 130 ANREIALW 137
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|B Chain B, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|C Chain C, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|D Chain D, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|E Chain E, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|F Chain F, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
Length = 136
Score = 93.6 bits (231), Expect = 7e-19, Method: Composition-based stats.
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT LI D +E+ ++GEI +R E+ GL I A ++ +S + Y+ H+ +PFF +L+
Sbjct: 4 RTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLL 63
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAK-GTIRADFAESIDKNIVHELGEMP 540
F+ SGPV ++EG AI R L G TDP++AA GTIR DFA N+VH
Sbjct: 64 EFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAE 123
Query: 541 FRAKQLQKW 549
+++ W
Sbjct: 124 SAQREIALW 132
>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase
Length = 150
Score = 93.2 bits (230), Expect = 9e-19, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 5 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+F+ SGPV V EG+ + R++IG T+ + +A G+IR DF + +NI+H +
Sbjct: 65 SFITSGPVVAMVFEGKGVVASARLMIGVTNSLASAPGSIRGDFGVDVGRNIIHGSDSVES 124
Query: 542 RAKQLQKW 549
+++ W
Sbjct: 125 ANREIALW 132
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside
Diphosphate Kinase
Length = 155
Score = 92.8 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 10 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 69
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+F+ SGPV V EG+ + R++IG T+P+ +A G+IR DF + +NI+
Sbjct: 70 SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNII 121
>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase
Length = 155
Score = 92.8 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 10 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 69
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+F+ SGPV V EG+ + R++IG T+P+ +A G+IR DF + +NI+
Sbjct: 70 SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNII 121
>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|B Chain B, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|C Chain C, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1F3F|A Chain A, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|B Chain B, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|C Chain C, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1MN9|A Chain A, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|B Chain B, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|C Chain C, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|3FKB|A Chain A, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|B Chain B, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|C Chain C, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|D Chain D, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|E Chain E, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|F Chain F, Structure Of Ndpk H122g And Tenofovir-Diphosphate
Length = 155
Score = 92.8 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 10 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 69
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+F+ SGPV V EG+ + R++IG T+P+ +A G+IR DF + +NI+
Sbjct: 70 SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNII 121
>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 155
Score = 92.8 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 10 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 69
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+F+ SGPV V EG+ + R++IG T+P+ +A G+IR DF + +NI+
Sbjct: 70 SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNII 121
>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2CWK|B Chain B, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2DXD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXE|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXE|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXF|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DXF|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DY9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DY9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DYA|A Chain A, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
pdb|2DYA|B Chain B, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
Length = 160
Score = 92.0 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT +I DA+ + ++GEI +R+EK GLKI+ M + + EK Y H+ +PFFK L+
Sbjct: 9 RTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALI 68
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDK---NIVH 534
+++ PV + VLEG A++ R + G TDP AA GTIR DF + N++H
Sbjct: 69 DYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIH 124
>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|B Chain B, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|C Chain C, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|D Chain D, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|E Chain E, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|F Chain F, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
Length = 151
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF I D +++ +VGEI R+E+ G +++A + S+ +++ Y K+RPFF LV
Sbjct: 5 RTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLV 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+M SGPV V EG + +K +++G+T+P + GTIR DF + +NI+H +
Sbjct: 65 KYMNSGPVVAMVWEGLNVVKTGAVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKS 124
Query: 542 RAKQLQKWIHKFGVSDF 558
K++ W + D+
Sbjct: 125 AEKEISLWFKPEELVDY 141
>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|B Chain B, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|C Chain C, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
Length = 152
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF I D +++ +VGEI R+E+ G +++ + S++ +++ Y K+RP+F LV
Sbjct: 6 RTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPWFAGLV 65
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+M SGPV V EG + +K R+++G+T+P + GTIR DF + +NI+ +
Sbjct: 66 KYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIGGSDSVES 125
Query: 542 RAKQLQKWIHKFGVSDF 558
K++ W H + D+
Sbjct: 126 AEKEIGLWFHPEELVDY 142
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|B Chain B, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|C Chain C, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 153
Score = 91.3 bits (225), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF ++ D +++ +VG+I R+E+ G K++A SK +EK Y+ RPFF LV
Sbjct: 7 RTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLV 66
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
N+M SGPV V EG + +K R ++G T+P + GTIR DF + +NI+ +
Sbjct: 67 NYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIXGSDAVES 126
Query: 542 RAKQLQKWIHK 552
K++ W ++
Sbjct: 127 AEKEIALWFNE 137
>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase
Length = 155
Score = 91.3 bits (225), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 10 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 69
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+F+ SGPV V EG+ + R+ IG T+P+ +A G+IR DF + +NI+
Sbjct: 70 SFITSGPVVAXVFEGKGVVASARLXIGVTNPLASAPGSIRGDFGVDVGRNII 121
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization
Length = 182
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 419 EKYFYRTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPF 476
E RTF I D +++ ++ EI +R+E+ G K++ + +K ++ Y K RPF
Sbjct: 29 EAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPF 88
Query: 477 FKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
F L +F+ SGPV V EGE I R LIG TDP K+A GTIR D A + +NI+H
Sbjct: 89 FNGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIH 146
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
pdb|3EMT|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
Length = 146
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 417 YLEKYFYRTFSLI--DALEKNIVGEIYNRYEKIGLKIIA-AYMKKLSKNDVEKFYSIHKN 473
Y + RT LI DA E+++V EI R EK KI++ + K +N +E+ Y H
Sbjct: 1 YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
Query: 474 RPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+ +F + +FM+SGP+ V EG DAI K R L G+T+P+ +A GTIR D A I +N++
Sbjct: 61 QSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIGENLI 120
Query: 534 H 534
H
Sbjct: 121 H 121
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EJM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EVO|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
pdb|3EVO|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
Length = 146
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 417 YLEKYFYRTFSLI--DALEKNIVGEIYNRYEKIGLKIIA-AYMKKLSKNDVEKFYSIHKN 473
Y + RT LI DA E+++V EI R EK KI++ + K +N +E+ Y H
Sbjct: 1 YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
Query: 474 RPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+ +F + +FM+SGP+ V EG DAI K R L G+T+P+ +A GTIR D A I +N++
Sbjct: 61 QSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLI 120
Query: 534 H 534
H
Sbjct: 121 H 121
>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S59|A Chain A, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|B Chain B, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|C Chain C, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|D Chain D, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|E Chain E, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|F Chain F, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
Length = 153
Score = 90.1 bits (222), Expect = 7e-18, Method: Composition-based stats.
Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 11/130 (8%)
Query: 430 DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPV 489
D +++ +VGEI +R+EK G K+I M + K E+ Y + FF NL+ ++ SGPV
Sbjct: 15 DGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPV 74
Query: 490 FIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH----------ELGEM 539
EG + R LIG TDP++A GTIR D A +NIVH E+G +
Sbjct: 75 VCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIG-L 133
Query: 540 PFRAKQLQKW 549
F+ +L KW
Sbjct: 134 WFKEGELCKW 143
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|B Chain B, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|C Chain C, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|D Chain D, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|E Chain E, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|F Chain F, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
Length = 157
Score = 89.4 bits (220), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D +++ +VGEI R+EK G K++A M + S ++ Y ++PF+K+LV
Sbjct: 11 RTFIAVKPDGVQRCLVGEIIQRFEKKGYKLVALKMLQPSAEQAQQHYIDLASKPFYKDLV 70
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+ SGP+ V EG+ +K R+L+G T+P + GTIR DFA + +N+ H +
Sbjct: 71 AYFSSGPIVGMVWEGKGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVDS 130
Query: 542 RAKQLQKW 549
+++ W
Sbjct: 131 AKREIAFW 138
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 76/122 (62%), Gaps = 4/122 (3%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ IVGKPNVGKSTL+N LL E+R I D PGTTRD I + ++DTAG+
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV-- 301
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
R++T +++E+ + +TL+ I +A++V+ +LDA + +D I I + +V +NK
Sbjct: 302 RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINK 359
Query: 303 WD 304
D
Sbjct: 360 VD 361
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V+VG+PNVGKSTL NRL N A+V + PG TRD E I F I+DT G E
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 305
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLVXXXXXXX 124
+ ++T Q +D L E+D+ I + K+ + +V++
Sbjct: 306 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI-KNKRYLVVINKVDVVE 364
Query: 125 XXXXXLDFYELGIGNPHI-ISALYGNGIKNFLENI 158
+LG + ISAL G G++ E+I
Sbjct: 365 KINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 399
>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
pdb|1MN7|B Chain B, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
Length = 155
Score = 88.6 bits (218), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RP+F LV
Sbjct: 10 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPWFGGLV 69
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+F+ SGPV V EG+ + R++IG T+P+ +A G+IR DF + ++I+
Sbjct: 70 SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRSII 121
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|G Chain G, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|H Chain H, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|I Chain I, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|J Chain J, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|K Chain K, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|L Chain L, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
Length = 150
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
++F +I D +++ ++G+I +R+EK G + + ++ ++ Y+ ++PFF LV
Sbjct: 4 QSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLV 63
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
++ISGPV V EG+D + R +IG T P +AA GTIRAD+A + +N++H +
Sbjct: 64 EYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDN 123
Query: 542 RAKQLQKW 549
K++ W
Sbjct: 124 GKKEIALW 131
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4
pdb|1EHW|B Chain B, Human Nucleoside Diphosphate Kinase 4
Length = 162
Score = 87.8 bits (216), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 70/122 (57%)
Query: 430 DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPV 489
D +++ +VG++ R+E+ G ++ M + ++ + + Y + +PF+ L+ +M SGPV
Sbjct: 34 DGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPV 93
Query: 490 FIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKW 549
V EG + ++ R +IG TD +AA GTIR DF+ I +N++H + +++Q W
Sbjct: 94 VAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLW 153
Query: 550 IH 551
Sbjct: 154 FQ 155
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D +++ +VGEI R+E+ G K++A + + + + Y ++PFF LV
Sbjct: 5 RTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPALV 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
+ SGP+ V EG++ +K R+L+G T+P + GTIR DFA + +N+ H +
Sbjct: 65 KYFSSGPIVCMVWEGKNVVKSGRVLLGATNPADSQPGTIRGDFAVDVGRNVCHGSDSVES 124
Query: 542 RAKQLQKW 549
+++ W
Sbjct: 125 AEREIAFW 132
>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKY|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
Length = 161
Score = 84.0 bits (206), Expect = 5e-16, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D +++N+VGEI R+E G K++ + + ++ ++ Y ++PF+ LV
Sbjct: 13 RTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLV 72
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMP- 540
++ SGP+ V EG +K R+L+G T+P + GTIR DFA + +N+ H +
Sbjct: 73 SYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVES 132
Query: 541 --------FRAKQLQKW 549
F+A++L W
Sbjct: 133 AKREIAFWFKAEELVSW 149
>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F4A|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
Length = 157
Score = 84.0 bits (206), Expect = 5e-16, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D +++N+VGEI R+E G K++ + + ++ ++ Y ++PF+ LV
Sbjct: 9 RTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLV 68
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMP- 540
++ SGP+ V EG +K R+L+G T+P + GTIR DFA + +N+ H +
Sbjct: 69 SYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVES 128
Query: 541 --------FRAKQLQKW 549
F+A++L W
Sbjct: 129 AKREIAFWFKAEELVSW 145
>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|B Chain B, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|C Chain C, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|D Chain D, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|E Chain E, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|F Chain F, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
Length = 149
Score = 84.0 bits (206), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
+TF +I D +++ ++GE+ R+EK G + + + ++ EK Y ++ FF LV
Sbjct: 3 QTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLV 62
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
++++SGPV + EG++ + R +IG T+P + GTIR DFA I +N++H +
Sbjct: 63 DYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVES 122
Query: 542 RAKQLQKW 549
K++ W
Sbjct: 123 ARKEIALW 130
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
pdb|3MPD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
Length = 151
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF +I DA+++ ++ I R+E+ GL + A+ + +E YS + PFF +V
Sbjct: 7 RTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMV 66
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPF 541
M+SG V V G+DA+ R LIG+T+P A+ GTIR D+ S KNI+H +
Sbjct: 67 EDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVEN 126
Query: 542 RAKQLQKWI 550
K+++ WI
Sbjct: 127 AEKEIKLWI 135
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 150/318 (47%), Gaps = 25/318 (7%)
Query: 867 SGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPM-FR 925
+GEE + ++M++FI + G ++LRPE T S+ R ++ P + WYS P +R
Sbjct: 80 AGEE---ITEQMFNFITK-GGHRVALRPEMTPSLARLLLGKGRSLLLPAK-WYSIPQCWR 134
Query: 926 HERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWK----NLNLKNICLELNS--- 978
+E GR R+ YQ ++ +G + AE+ ++C+ W L+ K++ +++NS
Sbjct: 135 YEAITRGRRREHYQWNMDIVGVK--SVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRKV 192
Query: 979 IGNFNERKKYCIDLINYIKK--HKDSKWFCEDIKHSLYLNSLR--VLDS--KNLIIREIL 1032
+ E+ D + K K E+++ L + L V+D+ L ++ I
Sbjct: 193 LQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSID 252
Query: 1033 INAPKLLDYLEK-DSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGS 1091
A ++ + E L F+ + Y + + +VRG+ YY VFE D+ G
Sbjct: 253 EIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVL-FDASVVRGLAYYTGIVFE-GFDREGK 310
Query: 1092 QNSICGGGRYDFLIKKF-SNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVG 1150
++CGGGRYD L+ + S +P +GF G ++EL+++ + + H D ++
Sbjct: 311 FRALCGGGRYDNLLTTYGSPTPIPCAGFGFGDCVIVELLQEKRLLPDIPHVVDDVVIPFD 370
Query: 1151 KEAELKAFVLSENLRTLG 1168
+ A + LR G
Sbjct: 371 ESMRPHALAVLRRLRDAG 388
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+KVAIVG+PNVGKS+L+N+ +R I D PGTTRD ++S ++DTAGIR
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR- 283
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES--GRSLIVCV 300
+T + +EK V ++ ++ A++V+L +DA + D IYE R LI+ +
Sbjct: 284 --ETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD----QEIYEQVKHRPLILVM 337
Query: 301 NKWD 304
NK D
Sbjct: 338 NKID 341
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ +VGRPNVGKS+L N + S A+V + PG TRD + +G ++DT G E
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR-ET 285
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLV 117
+ ++++QA +D G D+ I ++ +P++LV
Sbjct: 286 SDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILV 336
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
pdb|3OD1|B Chain B, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
Length = 400
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 85/331 (25%), Positives = 139/331 (41%), Gaps = 46/331 (13%)
Query: 868 GEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHE 927
G + I+ ++++ +D+ G+ L LRP+ TA + R V + P RL Y ++R +
Sbjct: 58 GVVSAILDQQLFKLLDQ-QGNTLVLRPDXTAPIARLVASSLKDRAYPLRLAYQSNVYRAQ 116
Query: 928 RPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFN---- 983
+ + G+ +F Q+GVE IG D E+I + K L + + +G N
Sbjct: 117 QNEGGKPAEFEQLGVELIGDGTASADGEVIALXIAALKRAGLSEFKVAIGHVGYVNALLX 176
Query: 984 ------------ERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLR-----VLDSKNL 1026
R Y + + Y + K D L SLR + +++ L
Sbjct: 177 DVVGNEQRADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLXNLLSLRGGRAAIEEARGL 236
Query: 1027 IIRE----ILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVF 1082
I E L KL + LE YG + + K + LV YY VF
Sbjct: 237 IQTEKGKTALAEXTKLYEVLES------YGASEYV-------KFDLTLVLHXSYYTGVVF 283
Query: 1083 EWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQC 1142
E ++LG +C GGRYD L+ KF ++ A+GF + I+ L+E + I++ C
Sbjct: 284 EGYGNRLGV--PLCSGGRYDELLSKF-HRPAQATGFGVRIDLLVEALNGEIISNGHEQTC 340
Query: 1143 DIYIVHVGKEAELKAFVLSENLRTLGLKVIL 1173
++ E +A L+ R G V+L
Sbjct: 341 ILF----SNERRFEAIELARKKRANGEAVVL 367
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBB|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBC|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
Length = 142
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 417 YLEKYFYRTFSLI--DALEKNIVGEIYNRYEKIGLKIIAA-YMKKLSKNDVEKFYSIHKN 473
Y + RT LI DA E+++V EI R EK KI++ + K +N +E+ Y H
Sbjct: 1 YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
Query: 474 RPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+ +F +L +FM+SGP+ V EG DAI K R L G+ GTIR D A I +N++
Sbjct: 61 QSYFNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIGENLI 116
Query: 534 H 534
H
Sbjct: 117 H 117
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FCW|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3GPA|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
Length = 142
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 417 YLEKYFYRTFSLI--DALEKNIVGEIYNRYEKIGLKIIAA-YMKKLSKNDVEKFYSIHKN 473
Y + RT LI DA E+++V EI R EK KI++ + K +N +E+ Y H
Sbjct: 1 YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
Query: 474 RPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+ +F +L +FM+SGP+ V EG DAI K R L G+ GTIR D A I +N++
Sbjct: 61 QSYFNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLI 116
Query: 534 H 534
H
Sbjct: 117 H 117
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 144/313 (46%), Gaps = 36/313 (11%)
Query: 907 NNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDI--DAELIIMCSRLW 964
N+L + P + +FR ER + GR+RQF Q ++ +G + DA+ + + ++
Sbjct: 115 NDLTF--PFARYQXDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQXPAIITEIF 172
Query: 965 KNLNLKNICLELNS----IG-----NFNERK-KYCIDLINYIKKHKDSKWFCEDIKHSLY 1014
+ +N+ + + +N+ G N +E + K CI +I+ ++K ++K +K L
Sbjct: 173 EAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAK-----VKLELE 227
Query: 1015 LNSLRVLDSKNLI-IREILINAPKLLDYLE------KDSLDHFYGIQKI---------LN 1058
+ ++ +I +I + +LD L+ +S G+ ++ L
Sbjct: 228 KEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLG 287
Query: 1059 YNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGF 1118
+ + I+ + RG++YY TV+E T + SIC GGRY+ L+ F + P G
Sbjct: 288 VPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKXPGVGI 347
Query: 1119 AIGIERLIELIKKININHNFSHQ-CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVF 1177
+IG+ RLI + K I + + +V+ E +S+ LR GL VI N
Sbjct: 348 SIGLTRLISRLLKAGILNTLPPTPAQVVVVNXQDELXPTYLKVSQQLRQAGLNVITNFEK 407
Query: 1178 NNIHESFKSQMKR 1190
+ + F++ K+
Sbjct: 408 RQLGKQFQAADKQ 420
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 146/318 (45%), Gaps = 25/318 (7%)
Query: 867 SGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPM-FR 925
+GEE + ++M++FI + G ++LRPE T S+ R ++ P + WYS P +R
Sbjct: 80 AGEE---ITEQMFNFITK-GGHRVALRPEMTPSLARQLLAKGRSLLLPAK-WYSIPQCWR 134
Query: 926 HERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL--KNICLELNS---IG 980
+E GR R+ YQ ++ IG + EL+ ++L L K++ +++NS +
Sbjct: 135 YEAITRGRRREHYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQ 194
Query: 981 NFNERKKYCID-------LINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILI 1033
E+ D +++ ++K + + L N + + S L ++ I
Sbjct: 195 TVVEQAGVSADKFAPVCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITS-TLSLKTIDE 253
Query: 1034 NAPKLLDYLEK-DSLDHFYGIQKILNYNNISYKI-NTKLVRGMDYYNRTVFEWTTDKLGS 1091
A ++ + E L F I +I Y + I + +VRG+ YY VFE D+ G+
Sbjct: 254 IAQRIGEEHEAVRELRDF--ITQIEAYGFGDWVIFDASVVRGLAYYTGIVFE-GFDRDGN 310
Query: 1092 QNSICGGGRYDFLIKKF-SNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVG 1150
++CGGGRYD L+ + S VP GF G ++EL+ + + H D ++
Sbjct: 311 FRALCGGGRYDNLLTTYGSPTAVPCVGFGFGDCVIVELLNEKKLLPELHHVVDDLVIPFD 370
Query: 1151 KEAELKAFVLSENLRTLG 1168
+ A + LR G
Sbjct: 371 ETMRPHALSILRRLRDAG 388
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
E + I GKPN GKSTL+N+LLG+ R I PGTTRD I+ F ++ + L DTAG+
Sbjct: 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL 291
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLD 273
R + E IE + ++ + EA++++ LLD
Sbjct: 292 R---EAGEEIEHEGIRRSRMKMAEADLILYLLD 321
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS-FIIIDTGGFEPEV 64
V+ G+PN GKSTL N L A+V++ PG TRD + E +I K+ F + DT G E
Sbjct: 237 VIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRD-YIEECFIHDKTMFRLTDTAGLR-EA 294
Query: 65 KKGIMHEMTKQTK 77
+ I HE ++++
Sbjct: 295 GEEIEHEGIRRSR 307
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|B Chain B, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|C Chain C, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|D Chain D, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|E Chain E, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|F Chain F, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
Length = 142
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 417 YLEKYFYRTFSLI--DALEKNIVGEIYNRYEKIGLKIIAA-YMKKLSKNDVEKFYSIHKN 473
Y + RT LI DA E+++V EI R EK KI++ + K +N +E+ Y H
Sbjct: 1 YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
Query: 474 RPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+ +F + +FM+SGP+ V EG DAI K R L G+ GTIR D A I +N++
Sbjct: 61 QSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIGENLI 116
Query: 534 H 534
H
Sbjct: 117 H 117
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|2B8P|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|3B6B|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
Length = 157
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAA-YMKKLSKNDVEKFYSIHKNRPFFKNL 480
RT LI DA E+++V EI R EK KI++ + K +N +E+ Y H + +F +
Sbjct: 23 RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDN 82
Query: 481 VNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMP 540
+FM+SGP+ V EG DAI K R L G+ GTIR D A I +N++H
Sbjct: 83 CDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHASDSED 138
Query: 541 FRAKQLQKW 549
++ W
Sbjct: 139 SAVDEISIW 147
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|3EE3|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EIC|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3ELH|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3GP9|A Chain A, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|B Chain B, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|C Chain C, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|D Chain D, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|E Chain E, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|F Chain F, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
Length = 142
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 417 YLEKYFYRTFSLI--DALEKNIVGEIYNRYEKIGLKIIA-AYMKKLSKNDVEKFYSIHKN 473
Y + RT LI DA E+++V EI R EK KI++ + K +N +E+ Y H
Sbjct: 1 YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSE 60
Query: 474 RPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIV 533
+ +F + +FM+SGP+ V EG DAI K R L G+ GTIR D A I +N++
Sbjct: 61 QSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLI 116
Query: 534 H 534
H
Sbjct: 117 H 117
>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Bacillus Halodenitrificans
Length = 150
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF ++ D +++N+VGE+ R+E GLK+ A + +SK+ Y+ PFF LV
Sbjct: 4 RTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLV 63
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
SGPVF V EG +A R ++G T+P AA GTIR DF S +N +H
Sbjct: 64 GGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIH 116
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRR 243
VAIVGKPNVGKSTL+N+LLG I GTTR + + N+ + I +DT GI
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINI-ANFIYESGRSLIVCVNK 302
K+ +V+ V +S+ EA+V++ ++DA + +D I NFI + +IV +NK
Sbjct: 73 KKS-DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 131
Query: 303 WD 304
D
Sbjct: 132 ID 133
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFII-IDTGG-FEP 62
+ +VG+PNVGKSTL N L ++ ++++ G TR R G I ++ II +DT G +EP
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 63 EVKKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLI-TNFLRKSGQPIVLV 117
+ + H M + KQ+ +D +G +D+ I NF++ +P+++V
Sbjct: 73 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRR 243
VAIVGKPNVGKSTL+N+LLG I GTTR + + N+ + I +DT GI
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINI-ANFIYESGRSLIVCVNK 302
K+ +V+ V +S+ EA+V++ ++DA + +D I NFI + +IV +NK
Sbjct: 72 KKS-DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 130
Query: 303 WD 304
D
Sbjct: 131 ID 132
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFII-IDTGG-FEP 62
+ +VG+PNVGKSTL N L ++ ++++ G TR R G I ++ II +DT G +EP
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 63 EVKKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLI-TNFLRKSGQPIVLV 117
+ + H M + KQ+ +D +G +D+ I NF++ +P+++V
Sbjct: 72 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 127
>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|B Chain B, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|C Chain C, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|D Chain D, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|E Chain E, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|F Chain F, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DZ6|A Chain A, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|B Chain B, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|C Chain C, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|D Chain D, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|E Chain E, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|F Chain F, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
Length = 190
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 430 DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFY-----SIHKNRPFFKNLVNFM 484
D + + ++G++ +R+E++GLK++AA M + ++ +K Y + + +L+ F+
Sbjct: 36 DGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFI 95
Query: 485 ISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFA 525
+ PVF V+EG ++I+ R L G T+P A GTIR DF+
Sbjct: 96 SNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFS 136
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 63.9 bits (154), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
E +KV I G+PN GKS+L+N+L G I D GTTRD ++ + +IDTAG+
Sbjct: 6 EGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 65
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
R + + +E+ + + + I +A+ V+ ++D
Sbjct: 66 REAS---DEVERIGIERAWQEIEQADRVLFMVDG 96
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+V+ GRPN GKS+L N L A+V + G TRD +I IIDT G
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 65
>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|B Chain B, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|C Chain C, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
Length = 195
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 36/146 (24%)
Query: 430 DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYS-------------------- 469
DA+ + +V EI +R++K GLKI+A K S ++E+FY
Sbjct: 25 DAVARGLVDEIISRFKKAGLKIVALKXVKASPEEIERFYPSSEEWLQSAGQKLLKAYQEL 84
Query: 470 -------------IHKNRPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAA 516
+ R +NLV + SGP + VL+G A++ R L+G T P A
Sbjct: 85 GIDPRAKIGTDDPVEVGRIIKRNLVKYXTSGPNVVXVLKGNRAVEIVRKLVGPTSPHSAP 144
Query: 517 KGTIRADFAESIDK-NIVHELGEMPF 541
GTIR D+ SID ++ E G + F
Sbjct: 145 PGTIRGDY--SIDSPDLAAEEGRVVF 168
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+KV I G+PN GKS+L+N+L G I D GTTRD ++ + +IDTAG+R
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
+ + +E+ + + + I +A+ V+ ++D
Sbjct: 65 AS---DEVERIGIERAWQEIEQADRVLFMVDG 93
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+V+ GRPN GKS+L N L A+V + G TRD +I IIDT G
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
KV I G+PN GKS+L+N+L G I D GTTRD ++ + +IDTAG+R
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREA 65
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
+ + +E+ + + + I +A+ V+ +D
Sbjct: 66 S---DEVERIGIERAWQEIEQADRVLFXVDG 93
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+V+ GRPN GKS+L N L A+V + G TRD +I IIDT G
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGL 62
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 58/305 (19%)
Query: 868 GEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHE 927
GE++ ++ Y D+ G+ LSLR + T R + N L KR ++ ++R +
Sbjct: 119 GEDSKLI----YDLKDQ-GGELLSLRYDLTVPFARYLAMNKLT--NIKR-YHIAKVYRRD 170
Query: 928 RPQY--GRYRQFYQIGVEAIGFPGPDI-DAE-LIIMCSRLWKNLNLKNICLELN------ 977
P GRYR+FYQ + G P I DAE L IMC + +L + + +++N
Sbjct: 171 NPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCE-ILSSLQIGDFLVKVNDRRILD 229
Query: 978 ---SIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLN-------SLRVLD----S 1023
+I ++ K I + + K W E++K+ + + R+ D
Sbjct: 230 GMFAICGVSDSKFRTI--CSSVDKLDKVSW--EEVKNEMVGEKGLAPEVADRIGDYVQQH 285
Query: 1024 KNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNY-------NNISYKINTKLVRGMDY 1076
+ + E L+ PKL K +L+ ++ + Y + IS+ ++ L RG+DY
Sbjct: 286 GGVSLVEQLLQDPKLSQ--NKQALEGLGDLKLLFEYLTLFGIDDKISFDLS--LARGLDY 341
Query: 1077 YNRTVFE----WTTDKLGSQ----NSICGGGRYDFLIKKFSNKF--VPASGFAIGIERLI 1126
Y ++E T + G + S+ GGRYD L+ F K VP G +IG+ER+
Sbjct: 342 YTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIF 401
Query: 1127 ELIKK 1131
++++
Sbjct: 402 SIVEQ 406
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 58/305 (19%)
Query: 868 GEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHE 927
GE++ ++ Y D+ G+ LSLR + T R + N L KR ++ ++R +
Sbjct: 66 GEDSKLI----YDLKDQ-GGELLSLRYDLTVPFARYLAMNKLT--NIKR-YHIAKVYRRD 117
Query: 928 RPQY--GRYRQFYQIGVEAIGFPGPDI-DAE-LIIMCSRLWKNLNLKNICLELN------ 977
P GRYR+FYQ + G P I DAE L IMC + +L + + +++N
Sbjct: 118 NPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCE-ILSSLQIGDFLVKVNDRRILD 176
Query: 978 ---SIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLN-------SLRVLD----S 1023
+I ++ K I + + K W E++K+ + + R+ D
Sbjct: 177 GMFAICGVSDSKFRTI--CSSVDKLDKVSW--EEVKNEMVGEKGLAPEVADRIGDYVQQH 232
Query: 1024 KNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNY-------NNISYKINTKLVRGMDY 1076
+ + E L+ PKL K +L+ ++ + Y + IS+ ++ L RG+DY
Sbjct: 233 GGVSLVEQLLQDPKLSQ--NKQALEGLGDLKLLFEYLTLFGIDDKISFDLS--LARGLDY 288
Query: 1077 YNRTVFE----WTTDKLGSQ----NSICGGGRYDFLIKKFSNKF--VPASGFAIGIERLI 1126
Y ++E T + G + S+ GGRYD L+ F K VP G +IG+ER+
Sbjct: 289 YTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIF 348
Query: 1127 ELIKK 1131
++++
Sbjct: 349 SIVEQ 353
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 60.1 bits (144), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
VAIVGKPNVGKSTL+N+LLG P TTR ++ + ++ + +DT G+ +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL---H 66
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQD 282
K + + +F + +++ + N V+ ++D + + +D
Sbjct: 67 KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED 104
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ +VG+PNVGKSTL N L + A ++ P TR R G G++ + +DT G +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRK--SGQPIVLV 117
+ M ++ +A VD R +D+L+ L+ PI+LV
Sbjct: 70 -DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV 123
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+AIVG+PNVGKSTL+N LLG+ IT TTR I + + I +DT G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
K I + SI + +VI +++ + + D + N + E +I+ VNK D
Sbjct: 68 K--RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVD 124
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ +VGRPNVGKSTL N+L + ++ + TR R G G I +DT G E
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLV 117
K+ I M K + V+G + D+++ N LR+ P++L
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 119
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+AIVG+PNVGKSTL+N LLG+ IT TTR I + + I +DT G+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
K I + SI + +VI +++ + + D + N + E +I+ VNK D
Sbjct: 71 K--RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVD 127
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ +VGRPNVGKSTL N+L + ++ + TR R G G I +DT G E
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70
Query: 65 KKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPIVLV 117
K+ I M K + V+G + D+++ N LR+ P++L
Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 122
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 10/123 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR- 242
++A++G PNVGKST+ N+L GEN I + PG T + + FEYN +K+ ++D G+
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIG-NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67
Query: 243 -RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
N E+I + +I + ++V+ ++DA +++ + + E G +L++ +N
Sbjct: 68 TANSIDEIIARDYIINE-----KPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALN 120
Query: 302 KWD 304
K D
Sbjct: 121 KMD 123
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+ L+G PNVGKST+FN LT + + N+PG+T ++ GE + F ++D G
Sbjct: 10 IALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 63
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 10/123 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR- 242
++A++G PNVGKST+ N+L GEN I + PG T + + FEYN +K+ ++D G+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIG-NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 243 -RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
N E+I + +I + ++V+ ++DA +++ + + E G +L++ +N
Sbjct: 64 TANSIDEIIARDYIINE-----KPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALN 116
Query: 302 KWD 304
K D
Sbjct: 117 KMD 119
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+ L+G PNVGKST+FN LT + + N+PG+T ++ GE + F ++D G
Sbjct: 6 IALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 10/123 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR- 242
++A++G PNVGKST+ N+L GEN I + PG T + + FEYN +K+ ++D G+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIG-NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 243 -RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
N E+I + +I + ++V+ ++DA +++ + + E G +L++ +N
Sbjct: 64 TANSIDEIIARDYIINE-----KPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALN 116
Query: 302 KWD 304
K D
Sbjct: 117 KMD 119
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+ L+G PNVGKST+FN LT + + N+PG+T ++ GE + F ++D G
Sbjct: 6 IALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 10/123 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR- 242
++A++G PNVGKST+ N+L GEN I + PG T + + FEYN +K+ ++D G+
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIG-NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 64
Query: 243 -RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
N E+I + +I + ++V+ ++DA +++ + + E G +L++ +N
Sbjct: 65 TANSIDEIIARDYIINE-----KPDLVVNIVDATA--LERNLYLTLQLXEXGANLLLALN 117
Query: 302 KWD 304
K D
Sbjct: 118 KXD 120
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+ L+G PNVGKST+FN LT + + N+PG+T ++ GE + F ++D G
Sbjct: 7 IALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 60
>pdb|1Z7M|A Chain A, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|B Chain B, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|C Chain C, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|D Chain D, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7N|A Chain A, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|B Chain B, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|C Chain C, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|D Chain D, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
Length = 344
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 47/269 (17%)
Query: 875 KKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRY 934
+++M+ FI G +++LR + T ++R + + + R Y G +FR E+ GR
Sbjct: 81 QEKMFQFIKH-EGQSITLRYDFTLPLVR--LYSQIKDSTSARYSYFGKIFRKEKRHKGRS 137
Query: 935 RQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCID--- 991
+ YQIG+E G + E++ + ++ + L L E+ S F +R D
Sbjct: 138 TENYQIGIELFGESADKSELEILSLALQVIEQLGLNKTVFEIGS-AKFFQRLCQLADGST 196
Query: 992 --------------LINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIR---EILIN 1034
L +I+K+ SK +K N L L+ NL+ ++LI+
Sbjct: 197 ELLTELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFITNELSRLE--NLVTNTKDDVLIS 254
Query: 1035 A-PKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQN 1093
+ +L ++ EK S+ I+ I+ I+ +V MDYY +F+ + +
Sbjct: 255 SFDQLKEFSEKLSM-----IKPII--------IDLGMVPKMDYYTDLMFKAYSS--AANQ 299
Query: 1094 SICGGGRYDFLIKKFSNKFVPASGFAIGI 1122
I GGRYD L+ F + FAIG
Sbjct: 300 PILSGGRYDQLLSNFQEE-----AFAIGF 323
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+L+G PN GK+TLFN LTN+ V N+PG+T ++ GE +G+ I D G
Sbjct: 5 LLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPG 57
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 187 IVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246
++G PN GK+TL N+L N+ + + PG T + F + D G+
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVG-NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVAN 64
Query: 247 FEVIEKFSVIKTLKSI-LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
E I + I I LE + +I ++DA + + + + ++E G+ ++V +N D
Sbjct: 65 AEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMD 121
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+ LVG PNVGK+T+FN LT R V N+PG+T ++ G +K F+++D G
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQH-VGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
VA+VG PNVGK+T+ N+L G + + + PG T + + + EY K+++++D GI
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVG-NWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSI-KSLFEYNNKKYILIDTAGIRRR 243
+ + G+ NVGKS+ +N+L+G+N I D GTT D + KS+ + L+DT G+
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKW 303
+ + + V K + A+ IL+ D+ D + N E +V VNK
Sbjct: 97 GE----LGRLRVEKARRVFYRADCGILVTDSAPTPYEDD--VVNLFKEMEIPFVVVVNKI 150
Query: 304 D 304
D
Sbjct: 151 D 151
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHY 42
+V+ GR NVGKS+ N L ++V++Y G T D Y
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVY 74
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
+VG PNVGKSTLFN LT + +AL ANYP T D++ G
Sbjct: 6 IVGLPNVGKSTLFNALTRA-NALAANYPFATIDKNVG 41
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN 206
+ V IVG PNVGKSTL N+L N
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRAN 25
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
+VG PNVGKSTLFN LT + +AL ANYP T D++ G
Sbjct: 6 IVGLPNVGKSTLFNALTRA-NALAANYPFATIDKNVG 41
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN 206
+ V IVG PNVGKSTL N+L N
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRAN 25
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
+ +KVA+ G PNVGK++L N+L G + + + PG T + + +F Y LID G
Sbjct: 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVA-NWPGVTVEKKEGVFTYKGYTINLIDLPG 61
Query: 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
+ + EK + LK +A++VIL+ D+
Sbjct: 62 TYSLGYS-SIDEKIARDYLLKG--DADLVILVADS 93
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFII 54
+ L G PNVGK++LFN LT ++ VAN+PG+T ++ EG K + I
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKK--EGVFTYKGYTI 54
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
P +V+ G PNVGKSTL LT ++ +A+YP TR + G+ G + IIDT G
Sbjct: 168 PTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224
Score = 38.1 bits (87), Expect = 0.027, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 180 IEYIKVAIVGKPNVGKSTLINSL-LGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
+E V I G PNVGKSTL+ +L + + +Y P TTR FE +Y +IDT
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASY--PFTTRGINVGQFEDGYFRYQIIDTP 222
Query: 239 G-----IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN 277
G I RN+ IEK +++ L+ + N++I + D ++
Sbjct: 223 GLLDRPISERNE----IEKQAIL-ALRYL--GNLIIYIFDPSEH 259
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
+ +KVA+ G PNVGK++L N+L G + + + PG T + + +F Y LID G
Sbjct: 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVA-NWPGVTVEKKEGVFTYKGYTINLIDLPG 61
Query: 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
+ + EK + LK +A++VIL+ D+
Sbjct: 62 TYSLGYS-SIDEKIARDYLLKG--DADLVILVADS 93
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFII 54
+ L G PNVGK++LFN LT ++ VAN+PG+T ++ EG K + I
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKK--EGVFTYKGYTI 54
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
+ +KVA+ G PNVGK++L N+L G + + + PG T + + +F Y LID G
Sbjct: 3 LHXVKVALAGCPNVGKTSLFNALTGTKQYVA-NWPGVTVEKKEGVFTYKGYTINLIDLPG 61
Query: 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA 274
+ + EK + LK +A++VIL+ D+
Sbjct: 62 TYSLGYS-SIDEKIARDYLLKG--DADLVILVADS 93
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFII 54
+ L G PNVGK++LFN LT ++ VAN+PG+T ++ EG K + I
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKK--EGVFTYKGYTI 54
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 MKPVLV-LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
MK + + L+G PN GK+TLFN+LT SR V N+ G+T +R G+ ++D G
Sbjct: 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
++ + + ++G PN GK+TL N L G + + + G T + + F + + L+D G
Sbjct: 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVG-NWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
Length = 270
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 MKPVLV-LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
MK + + L+G PN GK+TLFN+LT SR V N+ G+T +R G+ ++D G
Sbjct: 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
++ + + ++G PN GK+TL N L G + + + G T + + F + + L+D G
Sbjct: 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVG-NWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 MKPVLV-LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
MK + + L+G PN GK+TLFN+LT SR V N+ G+T +R G+ ++D G
Sbjct: 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
++ + + ++G PN GK+TL N L G + + + G T + + F + + L+D G
Sbjct: 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVG-NWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA--GIR 241
+VA VG+ NVGKS+L+N+L TPG TR SI F N KY +D G
Sbjct: 25 EVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTR-SIN--FYLVNSKYYFVDLPGYGYA 81
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
+ +K ++ K V K+ +V LL+D + D+ + ++ + +
Sbjct: 82 KVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLT 141
Query: 302 KWD 304
K D
Sbjct: 142 KMD 144
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+K + VGR NVGKS+L N L N + A V+ PG TR ++ Y+ + +D G+
Sbjct: 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF---YLVNSKYYFVDLPGY 78
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 157 NILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-G 215
N L EL K FK+K + + IVG N GK++L NSL G + + DT
Sbjct: 154 NKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKV--DTKLF 211
Query: 216 TTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA- 274
TT + NN+K +L+DT G R ++++ F V TL ++ +IL++D+
Sbjct: 212 TTMSPKRYAIPINNRKIMLVDTVGFIRGIPP-QIVDAFFV--TLSEAKYSDALILVIDST 268
Query: 275 -QQNISAQDIN----IANFIYESGRSLIVCVNKWD 304
+N+ + + I I SG+ ++V +NK D
Sbjct: 269 FSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm
446
Length = 373
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 1070 LVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELI 1129
L R +DYY VFE +G+ I GGRYD L+ +F PA GFA +ER++ ++
Sbjct: 307 LHRELDYYTGLVFEMFAPGVGA--PIAQGGRYDELLAQFGAG-APAVGFAFEVERVMAVL 363
Query: 1130 K 1130
+
Sbjct: 364 E 364
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
I+ I+G PNVGKSTLIN L +N T D PG T + K+ L+DT GI
Sbjct: 121 IRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT---TSQQWVKVGKELELLDTPGI 175
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+++G PNVGKSTL NRL A + PG+T + + + +GK+ ++DT G
Sbjct: 124 LIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--VGKE-LELLDTPGI 175
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gmppnp
Binding State
Length = 267
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
L+G PN GK+TLFN+LT +R V N+ G+T +R G
Sbjct: 8 LIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEG 43
Score = 35.0 bits (79), Expect = 0.28, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
++ + V ++G PN GK+TL N L G + + + G T + + +F + + L+D G
Sbjct: 1 MQKLTVGLIGNPNSGKTTLFNQLTGARQRVG-NWAGVTVERKEGIFATTDHQVTLVDLPG 59
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 157 NILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-G 215
N L EL K FK+K + + IVG N GK++L NSL G + + DT
Sbjct: 154 NKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKV--DTKLF 211
Query: 216 TTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA- 274
TT + NN+K +L+DT R ++++ F V TL ++ +IL++D+
Sbjct: 212 TTMSPKRYAIPINNRKIMLVDTVSFIRGIPP-QIVDAFFV--TLSEAKYSDALILVIDST 268
Query: 275 -QQNISAQDIN----IANFIYESGRSLIVCVNKWD 304
+N+ + + I I SG+ ++V +NK D
Sbjct: 269 FSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTNS-RDALVANYPGLTRD-RHYGEGYIGKKSFIIIDTG 58
++P + GR N GKST N L N R A + PG T+ ++ G + ++D
Sbjct: 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLP 87
Query: 59 GFE----PEVKKGIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPI 114
G+ P K ++ Q +D R+ L E D+ + + +G+PI
Sbjct: 88 GYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPI 147
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRV-ITYDTPGTTR 218
++A G+ N GKST IN L + R+ TPG T+
Sbjct: 31 EIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQ 66
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 164 PYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKS 223
P K KK F + +V IVG PN GKST+IN L G+ PG T+
Sbjct: 86 PRKVLLKKLSFDRL-----ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--Q 138
Query: 224 LFEYNNKKYILIDTAGIRRRN 244
F N IL DT GI +N
Sbjct: 139 WFSLENGVKIL-DTPGILYKN 158
Score = 36.6 bits (83), Expect = 0.088, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
+++VG PN GKST+ N+L R + V PG+T+ + G K I+DT G
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVK---ILDTPG 153
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 157 NILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-G 215
N L EL K FK+K + + IVG N GK++L NSL G + + DT
Sbjct: 154 NKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKV--DTKLF 211
Query: 216 TTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDA- 274
TT + NN+K +L+DT R ++++ F V TL ++ +IL++D+
Sbjct: 212 TTMSPKRYAIPINNRKIMLVDTVPFIRGIPP-QIVDAFFV--TLSEAKYSDALILVIDST 268
Query: 275 -QQNISAQDIN----IANFIYESGRSLIVCVNKWD 304
+N+ + + I I SG+ ++V +NK D
Sbjct: 269 FSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 179 SIEYIK----VAIVGKPNVGKSTLINSLL------GENRVITYDTPGTTRDSIKSLFEYN 228
+IEY + V +VG NVGKST IN + EN + T PGTT D I +
Sbjct: 153 AIEYYRGGKDVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEE 212
Query: 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANF 288
+ Y DT GI ++ + K S +K + E + L+ +Q + +A F
Sbjct: 213 SSLY---DTPGIINHHQXAHYVGKQS-LKLITPTKEIKPXVFQLNEEQTLFFS--GLARF 266
Query: 289 IYES-GRSLIVC 299
Y S GR C
Sbjct: 267 DYVSGGRRAFTC 278
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S.
Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLT--NSRDALVANYPGLTRDRHYG 43
+ L+G PN GK++LFN +T N R V N+PG+T +R G
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR---VGNWPGVTVERKSG 43
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G PN GK++L N + G N+ + + PG T + KS NK + D GI
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVG-NWPGVTVER-KSGLVKKNKDLEIQDLPGI 59
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
Length = 272
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLT--NSRDALVANYPGLTRDRHYG 43
+ L+G PN GK++LFN +T N R V N+PG+T +R G
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR---VGNWPGVTVERKSG 43
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G PN GK++L N + G N+ + + PG T + KS NK + D GI
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVG-NWPGVTVER-KSGLVKKNKDLEIQDLPGI 59
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
Length = 272
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLT--NSRDALVANYPGLTRDRHYG 43
+ L+G PN GK++LFN +T N R V N+PG+T +R G
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR---VGNWPGVTVERKSG 43
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G PN GK++L N + G N+ + + PG T + KS NK + D GI
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVG-NWPGVTVER-KSGLVKKNKDLEIQDLPGI 59
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRD 39
+VG PNVGKST FN LTNS+ A N+P T D
Sbjct: 27 IVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTID 58
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 183 IKVAIVGKPNVGKSTLINSL 202
+K+ IVG PNVGKST N L
Sbjct: 23 LKIGIVGLPNVGKSTFFNVL 42
>pdb|2V3D|A Chain A, Acid-Beta-Glucosidase With N-Butyl-Deoxynojirimycin
pdb|2V3D|B Chain B, Acid-Beta-Glucosidase With N-Butyl-Deoxynojirimycin
pdb|2V3E|A Chain A, Acid-Beta-Glucosidase With N-Nonyl-Deoxynojirimycin
pdb|2V3E|B Chain B, Acid-Beta-Glucosidase With N-Nonyl-Deoxynojirimycin
pdb|2V3F|A Chain A, Acid-Beta-Glucosidase Produced In Carrot
pdb|2V3F|B Chain B, Acid-Beta-Glucosidase Produced In Carrot
pdb|2VT0|A Chain A, X-Ray Structure Of A Conjugate With
Conduritol-Beta-Epoxide Of Acid-Beta-Glucosidase
Overexpressed In Cultured Plant Cells
pdb|2VT0|B Chain B, X-Ray Structure Of A Conjugate With
Conduritol-Beta-Epoxide Of Acid-Beta-Glucosidase
Overexpressed In Cultured Plant Cells
pdb|2WCG|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With N-Octyl(
Cyclic Guanidine)-Nojirimycin In The Active Site
pdb|2WCG|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With N-Octyl(
Cyclic Guanidine)-Nojirimycin In The Active Site
pdb|2XWD|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6o-(N'-(N- Octyl)imino)nojirimycin In The Active Site
pdb|2XWD|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6o-(N'-(N- Octyl)imino)nojirimycin In The Active Site
pdb|2XWE|A Chain A, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6s-(N'-(N- Octyl)imino)-6-Thionojirimycin In The
Active Site
pdb|2XWE|B Chain B, X-Ray Structure Of Acid-Beta-Glucosidase With
5n,6s-(N'-(N- Octyl)imino)-6-Thionojirimycin In The
Active Site
Length = 505
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 889 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 947
NL+L PEG + +R+ +++ +I D K +Y PMF H G + +F G + +G
Sbjct: 384 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYH----LGHFSKFIPEGSQRVGL 438
>pdb|1OGS|A Chain A, Human Acid-Beta-Glucosidase
pdb|1OGS|B Chain B, Human Acid-Beta-Glucosidase
pdb|1Y7V|A Chain A, X-ray Structure Of Human Acid-beta-glucosidase Covalently
Bound To Conduritol B Epoxide
pdb|1Y7V|B Chain B, X-ray Structure Of Human Acid-beta-glucosidase Covalently
Bound To Conduritol B Epoxide
pdb|2F61|A Chain A, Crystal Structure Of Partially Deglycosylated Acid
Beta-Glucosidase
pdb|2F61|B Chain B, Crystal Structure Of Partially Deglycosylated Acid
Beta-Glucosidase
pdb|2J25|A Chain A, Partially Deglycosylated Glucoceramidase
pdb|2J25|B Chain B, Partially Deglycosylated Glucoceramidase
pdb|2NSX|A Chain A, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|B Chain B, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|C Chain C, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NSX|D Chain D, Structure Of Acid-Beta-Glucosidase With Pharmacological
Chaperone Provides Insight Into Gaucher Disease
pdb|2NT0|A Chain A, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|B Chain B, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|C Chain C, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT0|D Chain D, Acid-Beta-Glucosidase Low Ph, Glycerol Bound
pdb|2NT1|A Chain A, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|B Chain B, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|C Chain C, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|2NT1|D Chain D, Structure Of Acid-Beta-Glucosidase At Neutral Ph
pdb|3GXD|A Chain A, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|B Chain B, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|C Chain C, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXD|D Chain D, Crystal Structure Of Apo Acid-Beta-Glucosidase Ph 4.5
pdb|3GXF|A Chain A, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|B Chain B, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|C Chain C, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXF|D Chain D, Crystal Structure Of Acid-Beta-Glucosidase With
Isofagomine At Neutral Ph
pdb|3GXI|A Chain A, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|B Chain B, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|C Chain C, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXI|D Chain D, Crystal Structure Of Acid-Beta-Glucosidase At Ph 5.5
pdb|3GXM|A Chain A, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|B Chain B, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|C Chain C, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3GXM|D Chain D, Crystal Structure Of Acid-beta-glucosidase At Ph 4.5,
Phosphate Crystallization Condition
pdb|3RIK|A Chain A, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|B Chain B, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|C Chain C, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIK|D Chain D, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|A Chain A, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|B Chain B, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|C Chain C, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
pdb|3RIL|D Chain D, The Acid Beta-Glucosidase Active Site Exhibits Plasticity
In Binding 3,4,5,6-Tetrahydroxyazepane-Based Inhibitors:
Implications For Pharmacological Chaperone Design For
Gaucher Disease
Length = 497
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 889 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 947
NL+L PEG + +R+ +++ +I D K +Y PMF H G + +F G + +G
Sbjct: 382 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYH----LGHFSKFIPEGSQRVGL 436
>pdb|2WKL|A Chain A, Velaglucerase Alfa
pdb|2WKL|B Chain B, Velaglucerase Alfa
Length = 497
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 889 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 947
NL+L PEG + +R+ +++ +I D K +Y PMF H G + +F G + +G
Sbjct: 382 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYH----LGHFSKFIPEGSQRVGL 436
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s
Mutant Without Nucleotide
Length = 272
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLT--NSRDALVANYPGLTRDRHYG 43
+ L+G PN GK++LFN +T N R V N+PG++ +R G
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR---VGNWPGVSVERKSG 43
>pdb|3KE0|A Chain A, Crystal Structure Of N370s Glucocerebrosidase At Acidic
Ph.
pdb|3KE0|B Chain B, Crystal Structure Of N370s Glucocerebrosidase At Acidic
Ph.
pdb|3KEH|A Chain A, Crystal Structure Of N370s Glucocerebrosidase Mutant At Ph
7.4
pdb|3KEH|B Chain B, Crystal Structure Of N370s Glucocerebrosidase Mutant At Ph
7.4
Length = 497
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 889 NLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF 947
NL+L PEG + +R+ +++ +I D K +Y PMF H G + +F G + +G
Sbjct: 382 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYH----LGHFSKFIPEGSQRVGL 436
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a
Mutant Bound To Gdp
Length = 272
Score = 36.6 bits (83), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLT--NSRDALVANYPGLTRDRHYG 43
+ L+G PN GK++LFN +T N R V N+PG+ +R G
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR---VGNWPGVAVERKSG 43
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
+VG PNVGKSTLFN LT + ANYP T + + G
Sbjct: 7 IVGLPNVGKSTLFNALTKA-GIEAANYPFCTIEPNTG 42
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 184 KVAIVGKPNVGKSTLINSL 202
K IVG PNVGKSTL N+L
Sbjct: 4 KCGIVGLPNVGKSTLFNAL 22
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVI-TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
I+VA G+ N GKS+ +N+L + + T TPG T+ + +LFE + K L+D G
Sbjct: 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ--LINLFEVADGKR-LVDLPGYG 83
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANV----VILLLDAQQNISAQDINIANFIYESGRSLI 297
E+ K+ + L LE +++L+D + + D + + +S +++
Sbjct: 84 YAEVPEEMKRKWQ--RALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVL 141
Query: 298 VCVNKWD 304
V + K D
Sbjct: 142 VLLTKAD 148
>pdb|2DZW|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E244a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZW|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E244a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 34/99 (34%)
Query: 102 LITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL------ 155
++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 71 IVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFLAEAKAS 107
Query: 156 --ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 108 GVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|2DZS|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E103a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZS|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E103a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 34/99 (34%)
Query: 102 LITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL------ 155
++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 71 IVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFLAAAKAS 107
Query: 156 --ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 108 GVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|2DZV|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D146a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZV|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D146a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 34/99 (34%)
Query: 102 LITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL------ 155
++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 71 IVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFLAEAKAS 107
Query: 156 --ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 108 GVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|1GEQ|A Chain A, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1WDW|A Chain A, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|C Chain C, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|E Chain E, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|G Chain G, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|I Chain I, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|K Chain K, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
Length = 248
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 34/99 (34%)
Query: 102 LITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL------ 155
++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 71 IVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFLAEAKAS 107
Query: 156 --ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 108 GVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 185 VAIVGKPNVGKSTLINSLLGE-----NRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
V +VG NVGKST IN ++ E N + T PGTT D I+ E Y DT G
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLY---DTPG 221
Query: 240 I 240
I
Sbjct: 222 I 222
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
V I+G + GK+TL++++ ++V + G T+ N+KK +DT G
Sbjct: 11 VTIMGHVDHGKTTLLDAIR-HSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGH---- 65
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
E F+ ++ + ++VIL++ A + Q + N + +IV +NK D
Sbjct: 66 ------EAFTTMRA-RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMD 118
>pdb|2DZP|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D17n) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZP|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D17n) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 34/99 (34%)
Query: 102 LITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL------ 155
++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 71 IVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFLAEAKAS 107
Query: 156 --ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 108 GVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY 46
+VG+PNVGKST F+ T D +ANYP T + + G Y
Sbjct: 5 VVGKPNVGKSTFFSAAT-LVDVEIANYPFTTIEANVGVTY 43
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRD 39
+VG PNVGKST F +T S ANYP T D
Sbjct: 25 IVGXPNVGKSTFFRAITKSVLGNPANYPYATID 57
>pdb|2E09|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E74a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2E09|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E74a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 34/99 (34%)
Query: 102 LITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL------ 155
++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 71 IVKAFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFLAEAKAS 107
Query: 156 --ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I E IK + PN
Sbjct: 108 GVDGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
Length = 272
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG 43
+ L+G P GK++LFN +T + V N+PG+T +R G
Sbjct: 6 IALIGNPASGKTSLFNLIT-GHNQRVGNWPGVTVERKSG 43
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
++A++G P GK++L N + G N+ + + PG T + KS NK + D GI
Sbjct: 5 EIALIGNPASGKTSLFNLITGHNQRVG-NWPGVTVER-KSGLVKKNKDLEIQDLPGI 59
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 184 KVAIVGKPNVGKSTLINSLLG-ENRVITYDTPGTTRDSIKSL-FEYNNKKYILIDTAGI- 240
++A+ G+ NVGKS+ INSL+ +N T PG T+ +L F N + +D G
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQ----TLNFYIINDELHFVDVPGYG 80
Query: 241 ------RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR 294
R +IE + + E V+ ++D + S D+ + F+ G
Sbjct: 81 FAKVSKSEREAWGRMIETYITTRE-----ELKAVVQIVDLRHAPSNDDVQMYEFLKYYGI 135
Query: 295 SLIVCVNKWD 304
+IV K D
Sbjct: 136 PVIVIATKAD 145
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRD-ALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
P + L GR NVGKS+ N L N ++ A ++ PG T+ ++ YI +D G+
Sbjct: 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF---YIINDELHFVDVPGYG 80
Query: 62 -PEVKK------GIMHEMTKQTKQAXXXXXXXXXXVDGRQGLVEQDKLITNFLRKSGQPI 114
+V K G M E T++ VD R D + FL+ G P+
Sbjct: 81 FAKVSKSEREAWGRMIETYITTRE---ELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPV 137
Query: 115 VLV 117
+++
Sbjct: 138 IVI 140
>pdb|2DZT|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZT|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 34/99 (34%)
Query: 102 LITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFLEN---- 157
++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 71 IVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFLAEAKAS 107
Query: 158 ----ILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
IL ++LP F KEFT I E IK + PN
Sbjct: 108 GVAGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|2DZU|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110n) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZU|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110n) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 34/99 (34%)
Query: 102 LITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL------ 155
++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 71 IVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFLAEAKAS 107
Query: 156 --ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
IL ++LP F KEFT I E IK + PN
Sbjct: 108 GVNGILVVDLP---VFHAKEFTEIAREEGIKTVFLAAPN 143
>pdb|2DZX|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E131- 132a) From A Hyperthermophile, Pyrococcus
Furiosus
pdb|2DZX|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E131- 132a) From A Hyperthermophile, Pyrococcus
Furiosus
Length = 248
Score = 34.3 bits (77), Expect = 0.50, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 34/99 (34%)
Query: 102 LITNFLRKSGQPIVLVXXXXXXXXXXXXLDFYELGIGNPHIISALYGNGIKNFL------ 155
++ F R S PIVL + +Y NP +Y G++NFL
Sbjct: 71 IVKEFRRHSSTPIVL-------------MTYY-----NP-----IYRAGVRNFLAEAKAS 107
Query: 156 --ENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPN 192
+ IL ++LP F KEFT I IK + PN
Sbjct: 108 GVDGILVVDLP---VFHAKEFTEIARAAGIKTVFLAAPN 143
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNK-KYILIDTAGIR 241
K+ ++G VGK+T IN +L Y+ T G + L + N K+ + DTAG
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG-- 70
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE------SGRS 295
EK +V+K + I A+ IL D I+ Q N+A ++ E +
Sbjct: 71 --------QEKKAVLKDVYYI-GASGAILFFDVTSRITCQ--NLARWVKEFQAVVGNEAP 119
Query: 296 LIVCVNKWD 304
++VC NK D
Sbjct: 120 IVVCANKID 128
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 33.9 bits (76), Expect = 0.60, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN--RVITYDTPGTTRDSIKSL 224
+FF K + +++S+ V ++GK VGKS+ +NSL+GE RV + G +
Sbjct: 24 EFFGKLKQKDMNSM---TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT 80
Query: 225 ---FEYNNKKYILIDTAGIRR----RNKTFEVIEKFSVIKTLKSIL 263
F N +IDT G+ ++ E+I+ F V +T+ +L
Sbjct: 81 MGGFTIN-----IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLL 121
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 33.9 bits (76), Expect = 0.60, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN--RVITYDTPGTTRDSIKSL 224
+FF K + +++S+ V ++GK VGKS+ +NSL+GE RV + G +
Sbjct: 24 EFFGKLKQKDMNSM---TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT 80
Query: 225 ---FEYNNKKYILIDTAGIRR----RNKTFEVIEKFSVIKTLKSIL 263
F N +IDT G+ ++ E+I+ F V +T+ +L
Sbjct: 81 MGGFTIN-----IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLL 121
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 33.9 bits (76), Expect = 0.62, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN--RVITYDTPGTTRDSIKSL 224
+FF K + +++S+ V ++GK VGKS+ +NSL+GE RV + G +
Sbjct: 24 EFFGKLKQKDMNSM---TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT 80
Query: 225 ---FEYNNKKYILIDTAGIRR----RNKTFEVIEKFSVIKTLKSIL 263
F N +IDT G+ ++ E+I+ F V +T+ +L
Sbjct: 81 MGGFTIN-----IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLL 121
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 33.9 bits (76), Expect = 0.63, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 185 VAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
+ ++G VG+S + N+LL +N Y P TTR KS E + K+Y I T + R
Sbjct: 22 LVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKS--EEDGKEYHFISTEEMTRN 79
Query: 244 NKTFEVIE 251
E +E
Sbjct: 80 ISANEFLE 87
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 185 VAIVGKPNVGKSTLINSLLG-ENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
V VG P+VGKSTL++ L G E+ Y+ TT ++ + Y K ++D GI
Sbjct: 75 VGFVGFPSVGKSTLLSKLTGTESEAAEYEF--TTLVTVPGVIRYKGAKIQMLDLPGI 129
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 33.5 bits (75), Expect = 0.70, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN--RVITYDTPGTTRDSIKSL 224
+FF K + +++S+ V ++GK VGKS+ +NSL+GE RV + G +
Sbjct: 23 EFFGKLKQKDMNSM---TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT 79
Query: 225 ---FEYNNKKYILIDTAGIRR----RNKTFEVIEKFSVIKTLKSIL 263
F N +IDT G+ ++ E+I+ F V +T+ +L
Sbjct: 80 MGGFTIN-----IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLL 120
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ + G PNVGKS+ +N ++ V TT++ F++ KY +IDT G+ R
Sbjct: 32 IILSGAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR- 89
Query: 245 KTFE---VIEKFSVIKTLKSILEANVVIL-LLDAQQNISAQDINIANFIYE-----SGRS 295
FE IE + T+ ++ N VIL ++D + N Y S +S
Sbjct: 90 -AFENRNTIE----MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS 144
Query: 296 LIVCVNKWD 304
+++ NK D
Sbjct: 145 IVIGFNKID 153
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
K ++L G PNVGKS+ N + + + V +Y T++ + G + IIDT G
Sbjct: 29 KKTIILSGAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGL 86
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTR 38
++ GR NVGKSTL RLT + PG+TR
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTR 36
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 189 GKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
G+ NVGKSTLI L G+ +V PG TR I+ E+ N K +ID G
Sbjct: 8 GRSNVGKSTLIYRLTGK-KVRRGKRPGVTRKIIE--IEWKNHK--IIDXPG 53
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAG 239
K+AI+G +VGKS+L + V +YD T ++ L N ++Y L+DTAG
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDP--TIENTFTKLITVNGQEYHLQLVDTAG 63
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAG 239
K+AI+G +VGKS+L + V +YD T ++ L N ++Y L+DTAG
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDP--TIENTFTKLITVNGQEYHLQLVDTAG 63
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAG 239
K+AI+G +VGKS+L + V +YD T ++ L N ++Y L+DTAG
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDP--TIENTFTKLITVNGQEYHLQLVDTAG 58
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTA 238
EY K+ +VG P VGKS L L+ + V YD T DS + + + +L +DTA
Sbjct: 3 EY-KLVVVGAPGVGKSALTIQLIQNHFVDEYDP--TIEDSYRKQVVIDGETCLLDILDTA 59
Query: 239 G 239
G
Sbjct: 60 G 60
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTA 238
EY K+ +VG P VGKS L L+ + V YD T DS + + + +L +DTA
Sbjct: 3 EY-KLVVVGAPGVGKSALTIQLIQNHFVDEYDP--TIEDSYRKQVVIDGETCLLDILDTA 59
Query: 239 G 239
G
Sbjct: 60 G 60
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 900 VIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIM 959
+I+ +I + + GP + + + +HE+ ++G Y FY G+E G P E++
Sbjct: 61 LIKDLISSGNVGLGPIEIVHMSYLNKHEKEEFGEY--FYVTGIEVSGPAMPVEFLEVLKS 118
Query: 960 CSRLWKNLNLKNICLE---LNSIGNFNERKKYCID 991
R+ KN++ NI L N N + R +Y D
Sbjct: 119 SKRISKNIS-NNIILTYCCFNFFSNLDIRIRYDAD 152
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 28/139 (20%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVIT---YDTPGTTRDSIKSL--------------F 225
I + ++ + GK+TL SLL + IT GTTR L F
Sbjct: 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 62
Query: 226 EYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINI 285
++ N K +IDT G + EV SV+ + ILL+ A+ + AQ +
Sbjct: 63 QWENTKVNIIDTPG--HMDFLAEVYRSLSVL---------DGAILLISAKDGVQAQTRIL 111
Query: 286 ANFIYESGRSLIVCVNKWD 304
+ + + G I +NK D
Sbjct: 112 FHALRKMGIPTIFFINKID 130
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 225 FEYNNKKYILIDTAGIR-RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDI 283
FE N + ++D G+R R + FE + + I L S E + V L+ D Q N + +
Sbjct: 172 FEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQV-LMEDRQTNRLTESL 230
Query: 284 NIANFIYE----SGRSLIVCVNKWD 304
NI I S S+I+ +NK D
Sbjct: 231 NIFETIVNNRVFSNVSIILFLNKTD 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,790,946
Number of Sequences: 62578
Number of extensions: 1459805
Number of successful extensions: 4172
Number of sequences better than 100.0: 173
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 3873
Number of HSP's gapped (non-prelim): 251
length of query: 1250
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1140
effective length of database: 8,089,757
effective search space: 9222322980
effective search space used: 9222322980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)