Query psy17091
Match_columns 1250
No_of_seqs 967 out of 7991
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 21:38:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14461 ribosomal RNA large s 100.0 6E-103 1E-107 871.8 36.5 341 526-871 15-366 (371)
2 COG0820 Predicted Fe-S-cluster 100.0 9.9E-97 2E-101 808.0 33.2 332 528-872 11-345 (349)
3 PRK14459 ribosomal RNA large s 100.0 1.3E-92 2.8E-97 802.0 37.2 335 526-869 29-371 (373)
4 PRK11194 ribosomal RNA large s 100.0 2.4E-91 5.3E-96 796.0 35.7 334 526-870 13-350 (372)
5 PRK14465 ribosomal RNA large s 100.0 5.8E-91 1.3E-95 782.7 35.7 326 526-869 12-341 (342)
6 PRK14462 ribosomal RNA large s 100.0 6.8E-91 1.5E-95 786.3 35.9 325 528-870 12-351 (356)
7 PRK14466 ribosomal RNA large s 100.0 2E-90 4.3E-95 774.6 35.0 328 526-872 12-340 (345)
8 PRK14467 ribosomal RNA large s 100.0 1.5E-89 3.2E-94 777.5 35.9 327 527-870 10-342 (348)
9 PRK14454 ribosomal RNA large s 100.0 1.6E-88 3.5E-93 771.4 35.8 328 526-870 9-339 (342)
10 PRK14457 ribosomal RNA large s 100.0 2E-88 4.4E-93 768.7 36.6 325 527-870 10-343 (345)
11 COG1160 Predicted GTPases [Gen 100.0 4.1E-87 9E-92 750.2 43.0 438 1-444 1-442 (444)
12 TIGR00048 radical SAM enzyme, 100.0 7.1E-86 1.5E-90 754.7 36.2 331 526-870 14-346 (355)
13 PRK14464 ribosomal RNA large s 100.0 7.7E-86 1.7E-90 738.9 31.4 320 527-870 4-330 (344)
14 PRK14470 ribosomal RNA large s 100.0 1.4E-84 3E-89 734.8 35.7 323 527-869 7-334 (336)
15 PRK14453 chloramphenicol/florf 100.0 1.4E-84 3.1E-89 737.9 35.3 325 526-870 7-343 (347)
16 PRK14460 ribosomal RNA large s 100.0 2.2E-84 4.7E-89 741.0 36.4 334 526-871 9-346 (354)
17 PRK14455 ribosomal RNA large s 100.0 7.2E-84 1.6E-88 738.5 36.5 331 526-870 18-350 (356)
18 PRK14456 ribosomal RNA large s 100.0 8.6E-83 1.9E-87 727.7 36.5 332 526-869 25-365 (368)
19 PRK14463 ribosomal RNA large s 100.0 2.1E-82 4.6E-87 723.2 35.6 326 526-870 12-338 (349)
20 PRK14468 ribosomal RNA large s 100.0 4.4E-82 9.5E-87 720.1 36.7 320 537-870 13-334 (343)
21 PRK14469 ribosomal RNA large s 100.0 1E-79 2.3E-84 707.1 36.0 327 526-870 9-338 (343)
22 COG0124 HisS Histidyl-tRNA syn 100.0 2.9E-69 6.4E-74 619.7 39.7 394 835-1243 25-427 (429)
23 PRK03003 GTP-binding protein D 100.0 8.4E-66 1.8E-70 621.0 50.2 427 2-438 38-465 (472)
24 TIGR03594 GTPase_EngA ribosome 100.0 1.7E-65 3.7E-70 617.8 50.5 425 4-436 1-427 (429)
25 PRK00093 GTP-binding protein D 100.0 3.4E-64 7.3E-69 606.8 50.8 428 2-438 1-429 (435)
26 PRK09518 bifunctional cytidyla 100.0 1.2E-62 2.7E-67 619.5 49.7 429 2-438 275-704 (712)
27 CHL00201 syh histidine-tRNA sy 100.0 1.7E-59 3.6E-64 557.6 44.2 407 821-1244 7-418 (430)
28 PLN02972 Histidyl-tRNA synthet 100.0 1.2E-58 2.7E-63 557.8 42.1 405 818-1246 327-762 (763)
29 PLN02530 histidine-tRNA ligase 100.0 1.4E-56 3E-61 539.3 41.6 380 836-1236 92-486 (487)
30 KOG1936|consensus 100.0 4E-55 8.6E-60 474.4 30.1 390 834-1244 80-515 (518)
31 TIGR00442 hisS histidyl-tRNA s 100.0 1.1E-53 2.5E-58 507.9 42.0 376 835-1220 21-397 (397)
32 PRK00037 hisS histidyl-tRNA sy 100.0 5.1E-53 1.1E-57 505.2 43.4 386 835-1243 25-410 (412)
33 PRK12420 histidyl-tRNA synthet 100.0 2.4E-53 5.3E-58 506.2 40.1 391 821-1236 7-422 (423)
34 PRK12292 hisZ ATP phosphoribos 100.0 2.4E-48 5.3E-53 457.5 32.8 340 836-1196 25-378 (391)
35 PRK12421 ATP phosphoribosyltra 100.0 1.7E-45 3.7E-50 430.7 32.5 355 821-1205 10-384 (392)
36 TIGR00443 hisZ_biosyn_reg ATP 100.0 1.2E-41 2.7E-46 389.6 26.0 285 834-1130 14-313 (314)
37 PRK12295 hisZ ATP phosphoribos 100.0 2.6E-41 5.6E-46 390.6 26.4 284 833-1128 9-370 (373)
38 cd00773 HisRS-like_core Class 100.0 1.3E-40 2.8E-45 372.2 28.0 251 834-1129 8-260 (261)
39 TIGR00418 thrS threonyl-tRNA s 100.0 3E-39 6.6E-44 400.4 32.0 357 813-1243 178-562 (563)
40 PF13393 tRNA-synt_His: Histid 100.0 6.5E-40 1.4E-44 377.7 23.6 278 835-1125 17-311 (311)
41 PRK12293 hisZ ATP phosphoribos 100.0 1.3E-37 2.7E-42 347.0 23.0 252 836-1130 27-280 (281)
42 PRK12444 threonyl-tRNA synthet 100.0 1.2E-36 2.6E-41 380.5 32.0 395 745-1246 215-637 (639)
43 PRK12305 thrS threonyl-tRNA sy 100.0 2.3E-36 4.9E-41 375.3 32.2 360 814-1247 185-572 (575)
44 PRK00413 thrS threonyl-tRNA sy 100.0 5.1E-35 1.1E-39 368.4 32.4 361 815-1247 251-635 (638)
45 COG3705 HisZ ATP phosphoribosy 100.0 3.5E-35 7.7E-40 330.7 19.3 341 836-1205 25-381 (390)
46 PRK14799 thrS threonyl-tRNA sy 100.0 1.5E-33 3.3E-38 338.0 29.1 412 738-1246 98-533 (545)
47 PRK12294 hisZ ATP phosphoribos 100.0 1.1E-31 2.4E-36 295.4 23.0 249 835-1110 14-268 (272)
48 PRK09194 prolyl-tRNA synthetas 100.0 5.8E-31 1.3E-35 323.5 24.8 387 837-1241 56-561 (565)
49 PLN02908 threonyl-tRNA synthet 100.0 5.6E-31 1.2E-35 329.2 23.0 353 823-1246 311-684 (686)
50 COG0105 Ndk Nucleoside diphosp 100.0 1.4E-31 3E-36 247.8 7.9 129 422-550 2-132 (135)
51 PRK12325 prolyl-tRNA synthetas 100.0 6.6E-28 1.4E-32 287.2 24.6 360 837-1241 56-438 (439)
52 PRK14542 nucleoside diphosphat 100.0 2.8E-29 6.1E-34 246.3 9.9 128 423-550 2-131 (137)
53 TIGR00409 proS_fam_II prolyl-t 100.0 9.4E-28 2E-32 291.7 23.2 385 837-1242 56-567 (568)
54 KOG1191|consensus 100.0 5.6E-29 1.2E-33 279.0 11.1 383 3-436 76-503 (531)
55 KOG1035|consensus 100.0 1.6E-27 3.6E-32 290.3 23.9 379 835-1244 939-1350(1351)
56 PRK14541 nucleoside diphosphat 100.0 8E-29 1.7E-33 244.5 10.0 128 423-550 2-131 (140)
57 cd04415 NDPk7A Nucleoside diph 100.0 1.3E-28 2.8E-33 240.8 9.7 127 423-549 1-130 (131)
58 PRK14545 nucleoside diphosphat 99.9 3.4E-28 7.3E-33 240.1 10.2 128 423-550 4-133 (139)
59 PRK14540 nucleoside diphosphat 99.9 3.4E-28 7.4E-33 239.1 10.0 128 423-550 3-132 (134)
60 PTZ00093 nucleoside diphosphat 99.9 3.8E-28 8.2E-33 242.3 10.5 128 423-550 3-132 (149)
61 PRK11145 pflA pyruvate formate 99.9 1.2E-26 2.5E-31 258.0 21.5 204 617-850 21-245 (246)
62 PLN02619 nucleoside-diphosphat 99.9 9E-28 1.9E-32 249.8 9.2 130 421-550 87-218 (238)
63 PLN02931 nucleoside diphosphat 99.9 1.3E-27 2.9E-32 242.2 9.9 129 422-550 29-162 (177)
64 cd04418 NDPk5 Nucleoside dipho 99.9 1.5E-27 3.2E-32 234.3 9.5 127 423-549 1-130 (132)
65 PRK14543 nucleoside diphosphat 99.9 2.9E-27 6.3E-32 237.9 9.4 130 421-550 4-150 (169)
66 PRK00668 ndk mulitfunctional n 99.9 4.4E-27 9.5E-32 232.4 9.9 128 423-550 2-131 (134)
67 cd04413 NDPk_I Nucleoside diph 99.9 5.5E-27 1.2E-31 230.5 10.3 127 423-549 1-129 (130)
68 PRK03991 threonyl-tRNA synthet 99.9 1.3E-24 2.7E-29 265.3 32.4 350 813-1246 205-594 (613)
69 cd04414 NDPk6 Nucleoside dipho 99.9 6.7E-27 1.4E-31 230.6 9.6 127 423-549 1-133 (135)
70 cd04412 NDPk7B Nucleoside diph 99.9 1.1E-26 2.4E-31 229.3 9.7 126 424-549 2-133 (134)
71 PLN02837 threonine-tRNA ligase 99.9 1.6E-24 3.6E-29 267.5 30.2 343 824-1247 238-611 (614)
72 PRK04173 glycyl-tRNA synthetas 99.9 6.9E-25 1.5E-29 260.7 25.4 305 837-1243 47-455 (456)
73 cd04416 NDPk_TX NDP kinase dom 99.9 1.7E-26 3.8E-31 227.8 9.4 126 424-549 2-131 (132)
74 cd00595 NDPk Nucleoside diphos 99.9 3.7E-26 8E-31 226.3 9.4 126 424-549 2-132 (133)
75 PF02421 FeoB_N: Ferrous iron 99.9 4.5E-25 9.8E-30 221.7 14.9 156 183-348 1-156 (156)
76 COG0441 ThrS Threonyl-tRNA syn 99.9 2.4E-24 5.2E-29 256.3 23.3 339 837-1247 229-583 (589)
77 TIGR00408 proS_fam_I prolyl-tR 99.9 2.2E-24 4.8E-29 258.3 23.1 335 813-1245 18-382 (472)
78 TIGR01290 nifB nitrogenase cof 99.9 1.5E-24 3.3E-29 256.4 21.1 203 617-845 25-258 (442)
79 PRK10076 pyruvate formate lyas 99.9 1.2E-24 2.6E-29 231.9 17.7 184 639-851 14-211 (213)
80 COG1159 Era GTPase [General fu 99.9 2.1E-24 4.7E-29 231.5 18.9 177 181-363 5-182 (298)
81 COG1159 Era GTPase [General fu 99.9 2.6E-24 5.7E-29 230.8 17.6 163 4-167 8-176 (298)
82 PRK14544 nucleoside diphosphat 99.9 4.2E-25 9.1E-30 224.5 10.0 129 422-550 3-176 (183)
83 COG0486 ThdF Predicted GTPase 99.9 3.9E-24 8.5E-29 242.6 18.2 163 181-355 216-378 (454)
84 KOG0888|consensus 99.9 2.6E-25 5.7E-30 217.4 7.5 131 422-552 5-140 (156)
85 PF00334 NDK: Nucleoside dipho 99.9 8.6E-25 1.9E-29 218.0 9.7 127 424-550 2-130 (135)
86 smart00562 NDK These are enzym 99.9 1.1E-24 2.3E-29 217.1 9.6 127 424-550 2-130 (135)
87 COG1160 Predicted GTPases [Gen 99.9 1E-23 2.2E-28 238.6 18.1 162 183-353 4-165 (444)
88 PRK08661 prolyl-tRNA synthetas 99.9 1.4E-22 3E-27 243.5 27.7 327 821-1244 32-387 (477)
89 PF02421 FeoB_N: Ferrous iron 99.9 2.5E-23 5.3E-28 209.2 14.9 150 4-158 2-156 (156)
90 COG1180 PflA Pyruvate-formate 99.9 1.9E-22 4.1E-27 222.4 18.8 204 617-848 36-243 (260)
91 COG0486 ThdF Predicted GTPase 99.9 4.9E-22 1.1E-26 225.6 18.4 160 3-165 218-378 (454)
92 TIGR02493 PFLA pyruvate format 99.9 2.3E-21 5.1E-26 214.2 23.0 213 604-845 4-235 (235)
93 TIGR00436 era GTP-binding prot 99.9 9.3E-22 2E-26 221.4 19.4 169 184-359 2-170 (270)
94 cd01895 EngA2 EngA2 subfamily. 99.9 2.6E-21 5.7E-26 202.9 20.0 170 182-351 2-173 (174)
95 TIGR00436 era GTP-binding prot 99.9 4E-21 8.7E-26 216.2 19.0 162 4-167 2-168 (270)
96 PRK15494 era GTPase Era; Provi 99.9 8.2E-21 1.8E-25 219.3 19.4 173 181-360 51-223 (339)
97 PRK09518 bifunctional cytidyla 99.9 4.5E-20 9.8E-25 233.7 27.4 162 182-353 275-436 (712)
98 TIGR02494 PFLE_PFLC glycyl-rad 99.8 8.1E-21 1.8E-25 217.0 16.9 174 643-846 105-295 (295)
99 PRK15494 era GTPase Era; Provi 99.8 3.1E-20 6.7E-25 214.5 19.3 163 4-167 54-220 (339)
100 PRK00089 era GTPase Era; Revie 99.8 2.9E-19 6.2E-24 204.2 24.9 169 182-356 5-174 (292)
101 cd01894 EngA1 EngA1 subfamily. 99.8 6.4E-20 1.4E-24 189.2 17.8 155 6-161 1-156 (157)
102 cd01858 NGP_1 NGP-1. Autoanti 99.8 6.4E-20 1.4E-24 189.3 14.5 150 76-240 2-157 (157)
103 PRK13762 tRNA-modifying enzyme 99.8 3.1E-19 6.7E-24 203.2 21.4 210 623-848 65-294 (322)
104 cd04171 SelB SelB subfamily. 99.8 3.2E-19 6.9E-24 185.5 18.5 156 184-350 2-163 (164)
105 PRK05291 trmE tRNA modificatio 99.8 1.8E-19 3.8E-24 215.7 18.1 158 181-354 214-371 (449)
106 TIGR03821 AblA_like_1 lysine-2 99.8 2.2E-19 4.7E-24 204.7 18.0 220 587-840 68-295 (321)
107 cd01894 EngA1 EngA1 subfamily. 99.8 2.8E-19 6.1E-24 184.4 17.3 156 186-351 1-156 (157)
108 PRK00164 moaA molybdenum cofac 99.8 4.3E-19 9.4E-24 206.2 19.8 206 616-852 17-229 (331)
109 COG0218 Predicted GTPase [Gene 99.8 1.4E-18 3.1E-23 177.3 20.7 170 182-354 24-198 (200)
110 TIGR00450 mnmE_trmE_thdF tRNA 99.8 4.4E-19 9.4E-24 210.7 19.4 158 181-352 202-359 (442)
111 TIGR03594 GTPase_EngA ribosome 99.8 4.8E-19 1E-23 214.0 19.1 161 184-354 1-161 (429)
112 cd01897 NOG NOG1 is a nucleola 99.8 7.4E-19 1.6E-23 183.7 17.9 160 184-352 2-167 (168)
113 TIGR03156 GTP_HflX GTP-binding 99.8 4.8E-19 1E-23 204.6 17.9 156 3-161 190-350 (351)
114 PRK00089 era GTPase Era; Revie 99.8 7.4E-19 1.6E-23 200.9 19.3 163 4-167 7-175 (292)
115 PLN02734 glycyl-tRNA synthetas 99.8 1.6E-18 3.5E-23 208.1 22.7 335 876-1246 234-663 (684)
116 PRK12296 obgE GTPase CgtA; Rev 99.8 2E-18 4.3E-23 204.0 22.9 171 182-361 159-348 (500)
117 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.3E-18 2.9E-23 179.2 18.9 155 183-352 2-156 (157)
118 PRK03003 GTP-binding protein D 99.8 7.6E-19 1.7E-23 212.8 19.5 161 182-352 38-198 (472)
119 PRK12298 obgE GTPase CgtA; Rev 99.8 9E-19 1.9E-23 204.4 19.1 167 183-356 160-336 (390)
120 TIGR03278 methan_mark_10 putat 99.8 1.5E-18 3.3E-23 201.2 20.6 195 624-849 7-247 (404)
121 TIGR00389 glyS_dimeric glycyl- 99.8 1.7E-18 3.7E-23 205.6 21.1 120 1113-1243 414-550 (551)
122 TIGR03156 GTP_HflX GTP-binding 99.8 8.9E-19 1.9E-23 202.4 18.3 157 182-351 189-350 (351)
123 PRK12299 obgE GTPase CgtA; Rev 99.8 2E-18 4.3E-23 197.8 20.5 164 183-354 159-329 (335)
124 COG0370 FeoB Fe2+ transport sy 99.8 7.2E-19 1.6E-23 208.1 17.1 166 182-357 3-168 (653)
125 TIGR03598 GTPase_YsxC ribosome 99.8 1.8E-18 3.9E-23 182.8 18.4 159 181-342 17-179 (179)
126 cd01897 NOG NOG1 is a nucleola 99.8 1.5E-18 3.3E-23 181.4 17.2 158 3-162 1-167 (168)
127 COG0218 Predicted GTPase [Gene 99.8 2.7E-18 5.9E-23 175.3 18.3 159 2-163 24-197 (200)
128 cd01898 Obg Obg subfamily. Th 99.8 1.2E-18 2.5E-23 182.6 15.9 160 184-351 2-169 (170)
129 PF00009 GTP_EFTU: Elongation 99.8 2.2E-18 4.7E-23 183.6 18.1 160 182-353 3-187 (188)
130 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.8E-18 3.9E-23 183.9 17.3 151 182-343 2-173 (195)
131 cd01879 FeoB Ferrous iron tran 99.8 1.8E-18 3.8E-23 178.8 16.9 156 187-352 1-156 (158)
132 PRK11058 GTPase HflX; Provisio 99.8 1.6E-18 3.4E-23 204.7 18.1 160 2-163 197-362 (426)
133 KOG1637|consensus 99.8 1.1E-18 2.4E-23 192.9 15.1 361 813-1243 171-554 (560)
134 cd01889 SelB_euk SelB subfamil 99.8 1.9E-18 4.1E-23 184.9 16.6 160 183-353 1-186 (192)
135 cd04163 Era Era subfamily. Er 99.8 9.1E-18 2E-22 174.6 19.8 164 182-351 3-167 (168)
136 PRK12299 obgE GTPase CgtA; Rev 99.8 3.7E-18 8.1E-23 195.5 17.9 160 2-164 158-329 (335)
137 TIGR02729 Obg_CgtA Obg family 99.8 4.7E-18 1E-22 194.7 18.5 161 183-352 158-328 (329)
138 cd04166 CysN_ATPS CysN_ATPS su 99.8 9.2E-19 2E-23 189.3 12.1 151 184-345 1-186 (208)
139 PRK05291 trmE tRNA modificatio 99.8 4E-18 8.6E-23 204.1 18.5 155 3-163 216-370 (449)
140 TIGR00450 mnmE_trmE_thdF tRNA 99.8 7.3E-18 1.6E-22 200.3 20.2 155 3-162 204-359 (442)
141 PRK00093 GTP-binding protein D 99.8 5E-18 1.1E-22 205.3 19.2 158 183-350 2-159 (435)
142 cd04171 SelB SelB subfamily. 99.8 7.9E-18 1.7E-22 175.0 17.5 148 4-160 2-163 (164)
143 PRK09554 feoB ferrous iron tra 99.8 1E-17 2.2E-22 210.3 21.8 164 182-353 3-168 (772)
144 PRK00454 engB GTP-binding prot 99.8 1.5E-17 3.2E-22 178.7 20.1 169 181-353 23-194 (196)
145 KOG1191|consensus 99.8 3.1E-18 6.7E-23 193.1 15.0 161 3-163 269-450 (531)
146 KOG2324|consensus 99.8 2.3E-18 5.1E-23 184.4 13.1 342 837-1240 61-426 (457)
147 cd01856 YlqF YlqF. Proteins o 99.8 5.8E-18 1.3E-22 177.2 16.0 162 69-240 6-170 (171)
148 cd01890 LepA LepA subfamily. 99.8 1.1E-17 2.4E-22 176.8 18.2 156 184-352 2-176 (179)
149 cd04142 RRP22 RRP22 subfamily. 99.8 1.1E-17 2.5E-22 179.0 17.8 170 183-358 1-179 (198)
150 cd00670 Gly_His_Pro_Ser_Thr_tR 99.8 3.7E-18 8E-23 188.9 14.4 140 835-980 9-158 (235)
151 TIGR03596 GTPase_YlqF ribosome 99.8 7.5E-18 1.6E-22 189.7 16.6 166 70-244 9-177 (276)
152 cd00881 GTP_translation_factor 99.8 1.5E-17 3.3E-22 177.2 18.0 159 184-353 1-187 (189)
153 cd01898 Obg Obg subfamily. Th 99.8 6.8E-18 1.5E-22 176.8 15.0 155 4-161 2-169 (170)
154 PRK11058 GTPase HflX; Provisio 99.8 1.2E-17 2.7E-22 197.1 18.9 161 183-354 198-363 (426)
155 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.5E-17 5.4E-22 169.7 18.9 155 3-162 2-156 (157)
156 cd01849 YlqF_related_GTPase Yl 99.8 4.3E-18 9.3E-23 175.2 13.1 150 84-240 1-155 (155)
157 KOG0084|consensus 99.8 1.3E-17 2.7E-22 167.3 15.7 152 2-165 9-174 (205)
158 PRK09563 rbgA GTPase YlqF; Rev 99.8 7.7E-18 1.7E-22 190.6 16.1 165 70-244 12-180 (287)
159 PRK12298 obgE GTPase CgtA; Rev 99.8 8.1E-18 1.8E-22 196.4 16.7 161 3-166 160-336 (390)
160 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.8E-17 6.1E-22 171.7 19.1 157 184-353 2-166 (168)
161 KOG1423|consensus 99.8 1.1E-17 2.4E-22 177.3 15.7 177 180-356 70-274 (379)
162 PRK04213 GTP-binding protein; 99.8 3.2E-17 7E-22 176.8 19.6 167 181-355 8-194 (201)
163 PRK12297 obgE GTPase CgtA; Rev 99.8 2E-17 4.2E-22 193.8 19.1 161 183-355 159-329 (424)
164 cd01879 FeoB Ferrous iron tran 99.8 1.3E-17 2.9E-22 172.2 15.8 150 7-161 1-155 (158)
165 cd01859 MJ1464 MJ1464. This f 99.8 1.4E-17 3.1E-22 171.7 15.9 148 76-240 6-156 (156)
166 PRK12296 obgE GTPase CgtA; Rev 99.7 1.3E-17 2.8E-22 197.1 17.2 158 3-164 160-341 (500)
167 cd01855 YqeH YqeH. YqeH is an 99.7 9.9E-18 2.1E-22 178.9 14.4 147 72-240 24-190 (190)
168 PRK12297 obgE GTPase CgtA; Rev 99.7 1.8E-17 3.8E-22 194.2 17.7 159 3-165 159-329 (424)
169 KOG1423|consensus 99.7 1.4E-17 3E-22 176.6 14.9 163 4-166 74-274 (379)
170 TIGR02729 Obg_CgtA Obg family 99.7 1.7E-17 3.7E-22 190.0 16.9 156 3-162 158-328 (329)
171 PRK14894 glycyl-tRNA synthetas 99.7 1.8E-17 4E-22 189.9 16.8 100 1135-1245 428-538 (539)
172 COG0370 FeoB Fe2+ transport sy 99.7 1.4E-17 3.1E-22 197.2 16.4 159 2-165 3-166 (653)
173 cd04138 H_N_K_Ras_like H-Ras/N 99.7 4.6E-17 9.9E-22 168.8 18.3 152 183-351 2-160 (162)
174 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 3.6E-17 7.9E-22 170.9 17.4 149 3-161 1-164 (168)
175 cd01890 LepA LepA subfamily. 99.7 4E-17 8.8E-22 172.6 17.9 152 4-164 2-178 (179)
176 cd01878 HflX HflX subfamily. 99.7 3.1E-17 6.8E-22 177.4 17.1 158 2-161 41-203 (204)
177 cd01857 HSR1_MMR1 HSR1/MMR1. 99.7 2.1E-17 4.6E-22 167.1 14.7 131 74-241 3-139 (141)
178 cd01878 HflX HflX subfamily. 99.7 3.1E-17 6.8E-22 177.4 16.8 158 182-351 41-203 (204)
179 cd04149 Arf6 Arf6 subfamily. 99.7 3.5E-17 7.5E-22 171.0 16.6 155 181-350 8-167 (168)
180 cd04154 Arl2 Arl2 subfamily. 99.7 3.5E-17 7.6E-22 172.1 16.4 154 181-349 13-171 (173)
181 cd01895 EngA2 EngA2 subfamily. 99.7 6.3E-17 1.4E-21 169.7 18.2 158 3-160 3-172 (174)
182 cd04160 Arfrp1 Arfrp1 subfamil 99.7 5.2E-17 1.1E-21 169.6 16.9 156 184-350 1-166 (167)
183 KOG0084|consensus 99.7 6.2E-17 1.3E-21 162.3 16.2 161 181-356 8-175 (205)
184 cd04163 Era Era subfamily. Er 99.7 1.2E-16 2.6E-21 166.1 19.1 158 3-161 4-167 (168)
185 cd01891 TypA_BipA TypA (tyrosi 99.7 7E-17 1.5E-21 173.0 17.7 151 183-345 3-174 (194)
186 cd04145 M_R_Ras_like M-Ras/R-R 99.7 8.7E-17 1.9E-21 167.3 17.9 155 182-352 2-163 (164)
187 cd01881 Obg_like The Obg-like 99.7 2E-17 4.4E-22 174.1 13.3 157 187-351 1-175 (176)
188 cd04120 Rab12 Rab12 subfamily. 99.7 6.9E-17 1.5E-21 172.9 17.4 157 183-354 1-164 (202)
189 PRK12317 elongation factor 1-a 99.7 2.2E-17 4.7E-22 198.3 15.0 156 180-346 4-198 (425)
190 COG1084 Predicted GTPase [Gene 99.7 7.3E-17 1.6E-21 174.7 17.3 163 182-351 168-334 (346)
191 COG0423 GRS1 Glycyl-tRNA synth 99.7 8.6E-17 1.9E-21 183.1 18.3 122 1113-1245 415-552 (558)
192 COG1084 Predicted GTPase [Gene 99.7 6.7E-17 1.4E-21 175.0 16.6 158 2-161 168-334 (346)
193 PRK04213 GTP-binding protein; 99.7 8.7E-17 1.9E-21 173.5 17.6 158 2-165 9-194 (201)
194 TIGR03597 GTPase_YqeH ribosome 99.7 2.9E-17 6.3E-22 191.3 14.8 229 71-323 52-296 (360)
195 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 2E-16 4.4E-21 165.0 19.7 156 182-353 2-164 (166)
196 KOG0094|consensus 99.7 6.8E-17 1.5E-21 160.9 14.8 152 3-167 23-189 (221)
197 KOG0092|consensus 99.7 3.8E-17 8.2E-22 163.2 13.1 152 3-166 6-170 (200)
198 cd04136 Rap_like Rap-like subf 99.7 1.2E-16 2.5E-21 166.1 17.5 152 183-351 2-161 (163)
199 PF01926 MMR_HSR1: 50S ribosom 99.7 9.5E-17 2.1E-21 156.7 15.8 116 4-120 1-116 (116)
200 TIGR00475 selB selenocysteine- 99.7 9E-17 1.9E-21 197.8 19.3 160 183-353 1-166 (581)
201 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 9E-17 2E-21 170.4 16.6 158 182-353 3-170 (183)
202 cd01874 Cdc42 Cdc42 subfamily. 99.7 8E-17 1.7E-21 169.4 16.0 156 183-351 2-173 (175)
203 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1E-16 2.2E-21 172.8 17.1 158 183-354 1-169 (201)
204 cd04136 Rap_like Rap-like subf 99.7 1.2E-16 2.6E-21 166.0 17.0 148 3-162 2-162 (163)
205 cd01889 SelB_euk SelB subfamil 99.7 1E-16 2.2E-21 171.5 16.8 153 4-165 2-188 (192)
206 cd01861 Rab6 Rab6 subfamily. 99.7 1.6E-16 3.5E-21 164.7 17.7 148 3-161 1-160 (161)
207 cd04178 Nucleostemin_like Nucl 99.7 3.5E-17 7.7E-22 169.8 12.6 142 84-240 1-172 (172)
208 cd00771 ThrRS_core Threonyl-tR 99.7 4.1E-16 9E-21 177.2 22.4 139 836-980 38-183 (298)
209 TIGR00437 feoB ferrous iron tr 99.7 7.4E-17 1.6E-21 198.6 17.6 154 189-352 1-154 (591)
210 cd04157 Arl6 Arl6 subfamily. 99.7 1.2E-16 2.5E-21 166.0 16.5 152 184-350 1-161 (162)
211 cd04142 RRP22 RRP22 subfamily. 99.7 1.7E-16 3.7E-21 170.0 18.1 160 4-165 2-176 (198)
212 cd01861 Rab6 Rab6 subfamily. 99.7 2.1E-16 4.6E-21 163.9 18.4 153 183-351 1-160 (161)
213 cd01865 Rab3 Rab3 subfamily. 99.7 2.4E-16 5.3E-21 164.3 18.8 148 3-163 2-163 (165)
214 cd04124 RabL2 RabL2 subfamily. 99.7 1.6E-16 3.4E-21 165.0 17.1 154 183-354 1-159 (161)
215 CHL00071 tufA elongation facto 99.7 9.2E-17 2E-21 190.9 17.4 151 180-341 10-181 (409)
216 cd04175 Rap1 Rap1 subgroup. T 99.7 1.7E-16 3.6E-21 165.3 17.3 153 183-352 2-162 (164)
217 cd01867 Rab8_Rab10_Rab13_like 99.7 3E-16 6.5E-21 163.9 19.2 156 182-353 3-165 (167)
218 cd04151 Arl1 Arl1 subfamily. 99.7 1.2E-16 2.6E-21 165.3 16.0 152 184-350 1-157 (158)
219 cd04112 Rab26 Rab26 subfamily. 99.7 2.9E-16 6.2E-21 167.9 19.4 158 183-355 1-165 (191)
220 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 2.6E-16 5.7E-21 164.2 18.7 147 3-162 3-163 (166)
221 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2.1E-16 4.5E-21 163.8 17.8 148 3-162 2-161 (162)
222 KOG0092|consensus 99.7 8.2E-17 1.8E-21 160.9 13.8 161 181-356 4-170 (200)
223 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.7E-16 3.7E-21 165.0 17.1 149 2-162 2-163 (164)
224 cd04150 Arf1_5_like Arf1-Arf5- 99.7 2.6E-16 5.6E-21 162.9 18.1 153 183-350 1-158 (159)
225 cd01864 Rab19 Rab19 subfamily. 99.7 2.1E-16 4.6E-21 164.7 17.6 155 182-351 3-164 (165)
226 cd01865 Rab3 Rab3 subfamily. 99.7 4.4E-16 9.5E-21 162.3 19.9 154 183-352 2-162 (165)
227 cd00881 GTP_translation_factor 99.7 1.8E-16 3.9E-21 168.9 17.4 152 4-164 1-188 (189)
228 PLN00223 ADP-ribosylation fact 99.7 2.9E-16 6.3E-21 166.0 18.7 153 182-353 17-178 (181)
229 cd04120 Rab12 Rab12 subfamily. 99.7 2.6E-16 5.7E-21 168.4 18.5 150 4-163 2-163 (202)
230 smart00173 RAS Ras subfamily o 99.7 2.4E-16 5.2E-21 164.0 17.8 154 183-353 1-162 (164)
231 PLN03118 Rab family protein; P 99.7 1.4E-16 3.1E-21 173.0 16.7 157 181-354 13-178 (211)
232 cd01868 Rab11_like Rab11-like. 99.7 3.1E-16 6.8E-21 163.4 18.5 147 3-162 4-164 (165)
233 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.6E-16 3.5E-21 167.1 16.4 154 182-350 15-173 (174)
234 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.4E-16 3.1E-21 164.6 15.6 152 184-350 1-157 (158)
235 cd01881 Obg_like The Obg-like 99.7 4.4E-17 9.4E-22 171.6 11.9 152 7-161 1-175 (176)
236 cd01888 eIF2_gamma eIF2-gamma 99.7 2E-16 4.3E-21 170.4 17.1 161 183-354 1-200 (203)
237 cd04144 Ras2 Ras2 subfamily. 99.7 2.7E-16 5.8E-21 168.0 17.9 154 184-354 1-164 (190)
238 cd01868 Rab11_like Rab11-like. 99.7 4.2E-16 9E-21 162.4 18.9 154 182-351 3-163 (165)
239 KOG0394|consensus 99.7 8.1E-17 1.8E-21 158.6 12.5 164 181-356 8-181 (210)
240 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 3.2E-16 6.9E-21 164.4 18.0 155 182-353 2-164 (172)
241 cd01864 Rab19 Rab19 subfamily. 99.7 4E-16 8.6E-21 162.6 18.6 150 2-161 3-164 (165)
242 cd04127 Rab27A Rab27a subfamil 99.7 4.1E-16 8.9E-21 165.0 19.0 155 182-352 4-176 (180)
243 cd04106 Rab23_lke Rab23-like s 99.7 3E-16 6.4E-21 162.9 17.6 152 183-350 1-160 (162)
244 cd00880 Era_like Era (E. coli 99.7 3.7E-16 8E-21 160.9 18.0 161 187-351 1-162 (163)
245 PRK12736 elongation factor Tu; 99.7 1.8E-16 3.8E-21 187.6 17.7 149 180-339 10-179 (394)
246 COG2262 HflX GTPases [General 99.7 2.1E-16 4.5E-21 176.7 17.1 162 2-165 192-358 (411)
247 cd04121 Rab40 Rab40 subfamily. 99.7 6.2E-16 1.3E-20 164.0 20.0 158 181-353 5-167 (189)
248 cd01891 TypA_BipA TypA (tyrosi 99.7 3.5E-16 7.6E-21 167.6 18.2 142 2-153 2-172 (194)
249 TIGR03598 GTPase_YsxC ribosome 99.7 2.4E-16 5.2E-21 166.6 16.7 148 2-152 18-179 (179)
250 PRK00454 engB GTP-binding prot 99.7 4.2E-16 9.2E-21 167.4 18.7 160 2-164 24-195 (196)
251 cd01866 Rab2 Rab2 subfamily. 99.7 6.4E-16 1.4E-20 161.6 19.5 157 182-353 4-166 (168)
252 KOG0094|consensus 99.7 3.3E-16 7.2E-21 156.0 16.2 161 181-356 21-188 (221)
253 smart00173 RAS Ras subfamily o 99.7 2.3E-16 5E-21 164.1 16.0 150 3-163 1-162 (164)
254 cd04119 RJL RJL (RabJ-Like) su 99.7 5.6E-16 1.2E-20 161.7 18.9 154 183-352 1-166 (168)
255 cd04122 Rab14 Rab14 subfamily. 99.7 5.6E-16 1.2E-20 161.7 18.9 147 2-162 2-163 (166)
256 cd04124 RabL2 RabL2 subfamily. 99.7 3.2E-16 7E-21 162.6 16.9 150 4-163 2-158 (161)
257 TIGR00231 small_GTP small GTP- 99.7 2.1E-16 4.6E-21 162.5 15.4 157 183-349 2-160 (161)
258 smart00177 ARF ARF-like small 99.7 3.4E-16 7.4E-21 164.7 17.1 156 182-352 13-173 (175)
259 PLN03127 Elongation factor Tu; 99.7 3E-16 6.6E-21 186.8 18.6 147 180-337 59-226 (447)
260 cd04175 Rap1 Rap1 subgroup. T 99.7 5E-16 1.1E-20 161.7 18.1 148 3-162 2-162 (164)
261 COG0442 ProS Prolyl-tRNA synth 99.7 2.7E-16 6E-21 184.5 17.8 417 785-1240 7-498 (500)
262 KOG0078|consensus 99.7 5.6E-16 1.2E-20 158.3 17.7 159 180-354 10-175 (207)
263 cd04158 ARD1 ARD1 subfamily. 99.7 2.3E-16 4.9E-21 165.2 15.4 150 4-166 1-164 (169)
264 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 4.8E-16 1E-20 162.7 17.8 158 184-354 2-166 (170)
265 cd01867 Rab8_Rab10_Rab13_like 99.7 6.6E-16 1.4E-20 161.4 18.8 150 2-162 3-164 (167)
266 cd04122 Rab14 Rab14 subfamily. 99.7 9.6E-16 2.1E-20 159.9 20.0 153 183-352 3-163 (166)
267 PRK09554 feoB ferrous iron tra 99.7 2.7E-16 5.8E-21 197.7 18.7 155 2-161 3-166 (772)
268 cd04109 Rab28 Rab28 subfamily. 99.7 5.5E-16 1.2E-20 168.9 18.8 156 183-354 1-167 (215)
269 cd04140 ARHI_like ARHI subfami 99.7 3.8E-16 8.2E-21 162.8 16.8 152 183-351 2-163 (165)
270 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.3E-16 2.8E-21 172.6 13.8 141 4-153 1-184 (208)
271 cd04109 Rab28 Rab28 subfamily. 99.7 4.6E-16 9.9E-21 169.5 18.2 150 4-164 2-167 (215)
272 cd04156 ARLTS1 ARLTS1 subfamil 99.7 3.2E-16 7E-21 162.3 16.2 152 184-350 1-159 (160)
273 cd01863 Rab18 Rab18 subfamily. 99.7 2.6E-16 5.6E-21 163.2 15.5 152 183-351 1-160 (161)
274 cd04119 RJL RJL (RabJ-Like) su 99.7 5.3E-16 1.1E-20 161.9 17.9 148 4-162 2-166 (168)
275 PTZ00133 ADP-ribosylation fact 99.7 4.8E-16 1E-20 164.6 17.6 157 182-353 17-178 (182)
276 smart00175 RAB Rab subfamily o 99.7 1E-15 2.2E-20 159.2 19.8 155 183-353 1-162 (164)
277 cd04149 Arf6 Arf6 subfamily. 99.7 2.9E-16 6.3E-21 164.0 15.7 145 3-160 10-167 (168)
278 TIGR02528 EutP ethanolamine ut 99.7 2.3E-16 5.1E-21 160.0 14.4 140 184-349 2-141 (142)
279 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 5.8E-16 1.3E-20 166.1 18.2 172 183-356 1-187 (196)
280 cd01866 Rab2 Rab2 subfamily. 99.7 7.6E-16 1.6E-20 161.1 18.7 149 2-163 4-166 (168)
281 PF00009 GTP_EFTU: Elongation 99.7 2.2E-16 4.8E-21 168.2 14.8 152 3-163 4-187 (188)
282 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 5.6E-16 1.2E-20 167.1 18.1 153 3-165 1-170 (201)
283 cd04133 Rop_like Rop subfamily 99.7 3.1E-16 6.7E-21 164.4 15.5 157 183-352 2-172 (176)
284 PRK10512 selenocysteinyl-tRNA- 99.7 4.4E-16 9.5E-21 192.0 19.4 157 184-351 2-164 (614)
285 cd04127 Rab27A Rab27a subfamil 99.7 6.8E-16 1.5E-20 163.3 18.4 147 3-162 5-176 (180)
286 cd04144 Ras2 Ras2 subfamily. 99.7 4.3E-16 9.2E-21 166.4 16.8 148 4-163 1-163 (190)
287 cd04158 ARD1 ARD1 subfamily. 99.7 3.5E-16 7.7E-21 163.7 15.9 155 184-354 1-162 (169)
288 cd04165 GTPBP1_like GTPBP1-lik 99.7 5.2E-16 1.1E-20 168.6 17.7 156 184-350 1-220 (224)
289 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 5E-16 1.1E-20 163.9 16.9 158 181-351 4-178 (182)
290 smart00175 RAB Rab subfamily o 99.7 8.6E-16 1.9E-20 159.7 18.5 147 4-163 2-162 (164)
291 cd04176 Rap2 Rap2 subgroup. T 99.7 4.8E-16 1E-20 161.6 16.6 152 183-351 2-161 (163)
292 cd04160 Arfrp1 Arfrp1 subfamil 99.7 3.9E-16 8.5E-21 163.0 15.9 148 4-160 1-166 (167)
293 cd04132 Rho4_like Rho4-like su 99.7 4.6E-16 9.9E-21 165.8 16.7 159 183-354 1-168 (187)
294 cd04143 Rhes_like Rhes_like su 99.7 4.6E-16 1E-20 171.8 17.2 156 183-353 1-171 (247)
295 cd04121 Rab40 Rab40 subfamily. 99.7 1E-15 2.2E-20 162.3 19.2 150 3-163 7-167 (189)
296 cd04126 Rab20 Rab20 subfamily. 99.7 8.2E-16 1.8E-20 166.5 18.7 156 183-353 1-190 (220)
297 cd01862 Rab7 Rab7 subfamily. 99.7 7.2E-16 1.6E-20 161.7 17.8 158 183-354 1-168 (172)
298 cd04128 Spg1 Spg1p. Spg1p (se 99.7 8.9E-16 1.9E-20 162.4 18.5 158 183-354 1-167 (182)
299 cd04147 Ras_dva Ras-dva subfam 99.7 5.4E-16 1.2E-20 166.7 17.2 156 184-353 1-163 (198)
300 cd04116 Rab9 Rab9 subfamily. 99.7 7.2E-16 1.6E-20 161.5 17.7 156 181-351 4-169 (170)
301 cd00877 Ran Ran (Ras-related n 99.7 3.7E-16 8E-21 163.0 15.3 154 183-353 1-159 (166)
302 PF01926 MMR_HSR1: 50S ribosom 99.7 3.8E-16 8.3E-21 152.5 14.5 116 184-302 1-116 (116)
303 cd04112 Rab26 Rab26 subfamily. 99.7 7.7E-16 1.7E-20 164.6 18.1 152 4-165 2-165 (191)
304 smart00178 SAR Sar1p-like memb 99.7 4.7E-16 1E-20 165.1 16.3 154 182-350 17-182 (184)
305 cd04106 Rab23_lke Rab23-like s 99.7 8.8E-16 1.9E-20 159.4 17.9 145 4-161 2-161 (162)
306 cd04154 Arl2 Arl2 subfamily. 99.7 4.9E-16 1.1E-20 163.4 16.2 145 3-160 15-172 (173)
307 cd04134 Rho3 Rho3 subfamily. 99.7 5.1E-16 1.1E-20 165.6 16.5 157 184-353 2-174 (189)
308 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 7.1E-16 1.5E-20 161.8 17.2 150 3-164 3-165 (172)
309 PRK12289 GTPase RsgA; Reviewed 99.7 3.1E-16 6.7E-21 179.9 15.7 143 76-245 83-239 (352)
310 cd01883 EF1_alpha Eukaryotic e 99.7 2.8E-16 6.1E-21 171.3 14.6 148 184-342 1-194 (219)
311 smart00177 ARF ARF-like small 99.7 6.8E-16 1.5E-20 162.5 17.0 147 3-162 14-173 (175)
312 cd01893 Miro1 Miro1 subfamily. 99.7 4.7E-16 1E-20 162.3 15.7 154 183-352 1-163 (166)
313 KOG1489|consensus 99.7 2.4E-16 5.3E-21 168.5 13.4 159 183-351 197-365 (366)
314 PLN00223 ADP-ribosylation fact 99.7 1E-15 2.2E-20 161.8 18.2 148 3-163 18-178 (181)
315 cd04113 Rab4 Rab4 subfamily. 99.7 4.8E-16 1E-20 161.3 15.5 153 183-351 1-160 (161)
316 cd01871 Rac1_like Rac1-like su 99.7 5.7E-16 1.2E-20 162.8 16.1 155 183-350 2-172 (174)
317 cd01860 Rab5_related Rab5-rela 99.7 9E-16 2E-20 159.5 17.4 153 183-352 2-162 (163)
318 PRK15467 ethanolamine utilizat 99.7 4.3E-16 9.4E-21 160.6 14.8 143 3-164 2-148 (158)
319 KOG0078|consensus 99.7 9.9E-16 2.1E-20 156.5 17.0 151 3-164 13-175 (207)
320 cd04131 Rnd Rnd subfamily. Th 99.7 7.4E-16 1.6E-20 162.3 16.8 157 182-351 1-174 (178)
321 PRK15467 ethanolamine utilizat 99.7 3.7E-16 8.1E-21 161.1 14.3 146 184-354 3-148 (158)
322 smart00178 SAR Sar1p-like memb 99.7 8.2E-16 1.8E-20 163.2 17.3 146 3-161 18-183 (184)
323 cd04130 Wrch_1 Wrch-1 subfamil 99.7 3.5E-16 7.6E-21 164.4 14.3 154 183-349 1-170 (173)
324 TIGR00487 IF-2 translation ini 99.7 5.5E-16 1.2E-20 189.6 18.0 156 181-349 86-246 (587)
325 cd04140 ARHI_like ARHI subfami 99.7 7E-16 1.5E-20 160.8 16.4 146 3-160 2-162 (165)
326 cd00877 Ran Ran (Ras-related n 99.7 9E-16 1.9E-20 160.1 17.1 152 3-164 1-160 (166)
327 cd04157 Arl6 Arl6 subfamily. 99.7 6.4E-16 1.4E-20 160.4 16.0 146 4-160 1-161 (162)
328 cd04150 Arf1_5_like Arf1-Arf5- 99.7 7.1E-16 1.5E-20 159.6 16.2 144 4-160 2-158 (159)
329 cd04118 Rab24 Rab24 subfamily. 99.7 6.2E-16 1.3E-20 165.7 16.3 158 183-353 1-166 (193)
330 cd04176 Rap2 Rap2 subgroup. T 99.7 7.8E-16 1.7E-20 160.0 16.4 148 3-162 2-162 (163)
331 PTZ00369 Ras-like protein; Pro 99.7 1.3E-15 2.9E-20 162.5 18.4 156 181-353 4-167 (189)
332 cd01875 RhoG RhoG subfamily. 99.7 9.4E-16 2E-20 163.7 17.0 158 182-352 3-176 (191)
333 cd04117 Rab15 Rab15 subfamily. 99.7 1.7E-15 3.7E-20 157.2 18.4 153 183-351 1-160 (161)
334 PRK12735 elongation factor Tu; 99.7 6.6E-16 1.4E-20 182.8 17.3 151 180-341 10-181 (396)
335 cd04111 Rab39 Rab39 subfamily. 99.7 1.1E-15 2.5E-20 165.5 17.6 158 182-355 2-168 (211)
336 smart00174 RHO Rho (Ras homolo 99.7 6.5E-16 1.4E-20 162.5 15.3 155 185-352 1-171 (174)
337 cd04151 Arl1 Arl1 subfamily. 99.7 8.8E-16 1.9E-20 158.8 16.0 144 4-160 1-157 (158)
338 cd04114 Rab30 Rab30 subfamily. 99.7 9.8E-16 2.1E-20 160.3 16.5 154 182-351 7-167 (169)
339 cd01896 DRG The developmentall 99.7 9.3E-16 2E-20 168.2 17.0 154 4-162 2-225 (233)
340 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 1.5E-15 3.2E-20 165.3 18.3 159 181-352 12-187 (232)
341 PRK05306 infB translation init 99.7 7.7E-16 1.7E-20 192.1 18.3 158 180-350 288-449 (787)
342 cd01876 YihA_EngB The YihA (En 99.7 2.1E-15 4.6E-20 157.2 18.8 164 185-351 2-169 (170)
343 cd04155 Arl3 Arl3 subfamily. 99.7 9.7E-16 2.1E-20 161.0 16.3 155 181-350 13-172 (173)
344 cd04139 RalA_RalB RalA/RalB su 99.7 1.9E-15 4.1E-20 157.1 18.3 154 183-353 1-162 (164)
345 cd04168 TetM_like Tet(M)-like 99.7 1.3E-15 2.7E-20 167.3 17.6 159 184-354 1-236 (237)
346 PLN03071 GTP-binding nuclear p 99.7 1E-15 2.2E-20 166.9 16.6 156 180-353 11-172 (219)
347 cd01892 Miro2 Miro2 subfamily. 99.7 1.5E-15 3.2E-20 158.9 17.2 149 3-163 5-166 (169)
348 cd00879 Sar1 Sar1 subfamily. 99.7 7.8E-16 1.7E-20 164.5 15.5 156 181-351 18-189 (190)
349 cd01892 Miro2 Miro2 subfamily. 99.7 1.2E-15 2.5E-20 159.7 16.4 157 181-352 3-165 (169)
350 PLN03110 Rab GTPase; Provision 99.7 1.6E-15 3.5E-20 165.1 18.1 158 181-354 11-175 (216)
351 cd04146 RERG_RasL11_like RERG/ 99.7 7.4E-16 1.6E-20 160.6 14.7 153 184-352 1-163 (165)
352 cd04110 Rab35 Rab35 subfamily. 99.7 2.5E-15 5.3E-20 161.7 19.1 157 181-353 5-167 (199)
353 cd04110 Rab35 Rab35 subfamily. 99.7 2.4E-15 5.2E-20 161.8 19.0 151 3-164 7-168 (199)
354 cd04113 Rab4 Rab4 subfamily. 99.7 2.2E-15 4.8E-20 156.3 18.1 147 4-161 2-160 (161)
355 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.3E-15 2.8E-20 162.1 16.6 140 3-151 3-171 (195)
356 TIGR02528 EutP ethanolamine ut 99.7 5.6E-16 1.2E-20 157.2 13.2 136 3-159 1-141 (142)
357 cd04115 Rab33B_Rab33A Rab33B/R 99.7 2.8E-15 6.1E-20 157.1 18.9 156 182-352 2-168 (170)
358 cd04117 Rab15 Rab15 subfamily. 99.7 2.7E-15 5.9E-20 155.6 18.6 145 4-161 2-160 (161)
359 cd04101 RabL4 RabL4 (Rab-like4 99.7 2.4E-15 5.2E-20 156.5 18.2 155 183-352 1-163 (164)
360 PRK00049 elongation factor Tu; 99.7 1.2E-15 2.5E-20 180.6 17.8 150 180-340 10-180 (396)
361 cd00154 Rab Rab family. Rab G 99.7 1.3E-15 2.8E-20 156.9 16.0 151 183-349 1-158 (159)
362 cd00157 Rho Rho (Ras homology) 99.7 8.8E-16 1.9E-20 160.9 14.9 155 183-350 1-170 (171)
363 cd01886 EF-G Elongation factor 99.7 8.5E-16 1.9E-20 171.5 15.6 143 184-338 1-160 (270)
364 TIGR00485 EF-Tu translation el 99.7 1.5E-15 3.2E-20 180.2 18.5 149 180-339 10-179 (394)
365 KOG0098|consensus 99.7 1.3E-15 2.8E-20 150.4 14.8 150 2-164 6-169 (216)
366 cd01896 DRG The developmentall 99.7 1.7E-15 3.7E-20 166.1 17.4 153 184-352 2-225 (233)
367 PTZ00133 ADP-ribosylation fact 99.7 1.7E-15 3.7E-20 160.4 16.8 148 3-163 18-178 (182)
368 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.4E-15 3E-20 161.3 16.1 151 3-164 4-171 (183)
369 CHL00189 infB translation init 99.7 1.4E-15 3.1E-20 187.9 18.5 159 180-351 242-408 (742)
370 TIGR01393 lepA GTP-binding pro 99.7 1.8E-15 3.9E-20 186.3 19.5 158 183-353 4-180 (595)
371 cd04116 Rab9 Rab9 subfamily. 99.7 3E-15 6.6E-20 156.8 18.4 149 3-161 6-169 (170)
372 cd04125 RabA_like RabA-like su 99.7 2.9E-15 6.3E-20 159.8 18.4 149 3-164 1-163 (188)
373 PTZ00369 Ras-like protein; Pro 99.7 1.4E-15 3E-20 162.3 15.9 151 3-165 6-169 (189)
374 cd01862 Rab7 Rab7 subfamily. 99.7 3.1E-15 6.8E-20 156.9 18.4 151 4-164 2-168 (172)
375 cd04135 Tc10 TC10 subfamily. 99.7 1.5E-15 3.2E-20 159.8 15.7 156 183-351 1-172 (174)
376 cd04125 RabA_like RabA-like su 99.7 3.2E-15 6.9E-20 159.4 18.4 156 183-354 1-163 (188)
377 cd04123 Rab21 Rab21 subfamily. 99.7 3.9E-15 8.5E-20 154.3 18.6 153 183-351 1-160 (162)
378 cd01860 Rab5_related Rab5-rela 99.7 1.8E-15 4E-20 157.2 16.1 149 3-162 2-162 (163)
379 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 2.7E-15 5.8E-20 157.1 17.4 149 4-163 2-165 (170)
380 cd04114 Rab30 Rab30 subfamily. 99.7 2.5E-15 5.4E-20 157.2 17.2 149 3-161 8-167 (169)
381 TIGR00487 IF-2 translation ini 99.7 1.4E-15 3.1E-20 185.9 17.6 149 2-160 87-247 (587)
382 cd01863 Rab18 Rab18 subfamily. 99.7 4.2E-15 9.2E-20 154.1 18.5 147 4-161 2-160 (161)
383 PRK05306 infB translation init 99.6 1.5E-15 3.3E-20 189.5 17.7 149 2-160 290-449 (787)
384 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.6E-15 3.5E-20 157.1 15.1 144 4-160 1-159 (160)
385 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 2.3E-15 5E-20 161.5 16.7 161 4-165 2-186 (196)
386 cd04177 RSR1 RSR1 subgroup. R 99.6 2.4E-15 5.2E-20 157.3 16.5 154 183-352 2-163 (168)
387 cd01874 Cdc42 Cdc42 subfamily. 99.6 2.3E-15 4.9E-20 158.4 16.3 147 3-160 2-172 (175)
388 cd04103 Centaurin_gamma Centau 99.6 1.5E-15 3.3E-20 156.8 14.7 149 183-350 1-156 (158)
389 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 2.5E-15 5.5E-20 158.0 16.7 145 3-160 16-173 (174)
390 PLN03110 Rab GTPase; Provision 99.6 4.6E-15 9.9E-20 161.5 18.9 151 3-164 13-175 (216)
391 cd04161 Arl2l1_Arl13_like Arl2 99.6 2.5E-15 5.4E-20 156.9 16.1 152 184-350 1-166 (167)
392 cd04101 RabL4 RabL4 (Rab-like4 99.6 4.6E-15 9.9E-20 154.4 18.1 150 4-162 2-163 (164)
393 cd04159 Arl10_like Arl10-like 99.6 4.5E-15 9.7E-20 153.0 17.7 152 185-350 2-158 (159)
394 PLN02951 Molybderin biosynthes 99.6 5.1E-15 1.1E-19 172.7 20.2 212 602-844 42-261 (373)
395 KOG0087|consensus 99.6 1E-15 2.2E-20 155.2 12.4 151 3-163 15-176 (222)
396 PLN03071 GTP-binding nuclear p 99.6 3.9E-15 8.5E-20 162.2 18.0 153 3-165 14-174 (219)
397 cd01886 EF-G Elongation factor 99.6 3.5E-14 7.6E-19 158.6 25.9 113 4-125 1-130 (270)
398 PLN03118 Rab family protein; P 99.6 2.6E-15 5.5E-20 163.2 16.3 151 3-165 15-179 (211)
399 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 4.7E-15 1E-19 161.4 18.3 150 3-163 14-188 (232)
400 TIGR00157 ribosome small subun 99.6 5.6E-16 1.2E-20 170.8 11.0 147 71-244 25-185 (245)
401 cd00879 Sar1 Sar1 subfamily. 99.6 2.8E-15 6.1E-20 160.2 16.1 147 2-161 19-189 (190)
402 cd04111 Rab39 Rab39 subfamily. 99.6 5E-15 1.1E-19 160.5 18.2 150 2-164 2-167 (211)
403 cd04139 RalA_RalB RalA/RalB su 99.6 4.7E-15 1E-19 154.1 17.3 148 3-162 1-161 (164)
404 TIGR00437 feoB ferrous iron tr 99.6 1.9E-15 4E-20 186.3 16.6 149 9-162 1-154 (591)
405 cd04123 Rab21 Rab21 subfamily. 99.6 7.2E-15 1.6E-19 152.3 18.6 150 3-162 1-161 (162)
406 cd04133 Rop_like Rop subfamily 99.6 3.8E-15 8.2E-20 156.2 16.5 149 3-162 2-172 (176)
407 cd04143 Rhes_like Rhes_like su 99.6 6.2E-15 1.4E-19 162.9 19.0 148 4-162 2-170 (247)
408 cd04131 Rnd Rnd subfamily. Th 99.6 5E-15 1.1E-19 156.0 17.2 148 3-161 2-174 (178)
409 cd01870 RhoA_like RhoA-like su 99.6 3.8E-15 8.3E-20 156.8 16.4 156 183-351 2-173 (175)
410 cd04118 Rab24 Rab24 subfamily. 99.6 5.4E-15 1.2E-19 158.4 17.7 149 4-163 2-166 (193)
411 KOG0098|consensus 99.6 3.5E-15 7.6E-20 147.4 14.5 157 181-352 5-167 (216)
412 PLN03126 Elongation factor Tu; 99.6 4E-15 8.7E-20 178.0 18.2 151 180-341 79-250 (478)
413 TIGR00491 aIF-2 translation in 99.6 3E-15 6.5E-20 182.6 17.3 157 182-351 4-214 (590)
414 cd00876 Ras Ras family. The R 99.6 5.5E-15 1.2E-19 152.8 16.9 152 184-351 1-159 (160)
415 COG1163 DRG Predicted GTPase [ 99.6 8.5E-16 1.9E-20 165.3 10.9 155 4-163 65-289 (365)
416 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 6.1E-15 1.3E-19 155.6 17.4 149 2-161 5-178 (182)
417 KOG0394|consensus 99.6 1.7E-15 3.7E-20 149.4 12.0 153 3-165 10-180 (210)
418 cd00878 Arf_Arl Arf (ADP-ribos 99.6 4.4E-15 9.6E-20 153.5 16.0 144 4-160 1-157 (158)
419 cd04137 RheB Rheb (Ras Homolog 99.6 5.4E-15 1.2E-19 156.5 16.9 155 183-354 2-164 (180)
420 cd04115 Rab33B_Rab33A Rab33B/R 99.6 7.3E-15 1.6E-19 154.0 17.7 151 2-162 2-168 (170)
421 cd04128 Spg1 Spg1p. Spg1p (se 99.6 6.7E-15 1.5E-19 155.7 17.4 149 4-164 2-167 (182)
422 cd00154 Rab Rab family. Rab G 99.6 6.6E-15 1.4E-19 151.6 17.0 147 3-159 1-158 (159)
423 PRK05124 cysN sulfate adenylyl 99.6 1.7E-15 3.7E-20 182.3 14.4 155 180-345 25-217 (474)
424 PLN03108 Rab family protein; P 99.6 9.9E-15 2.1E-19 158.2 19.0 155 182-352 6-167 (210)
425 TIGR00231 small_GTP small GTP- 99.6 2.9E-15 6.4E-20 153.9 14.1 152 3-158 2-159 (161)
426 cd04146 RERG_RasL11_like RERG/ 99.6 3.1E-15 6.7E-20 155.9 14.2 148 4-162 1-163 (165)
427 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 6.9E-15 1.5E-19 159.3 17.3 157 183-352 2-175 (222)
428 cd04177 RSR1 RSR1 subgroup. R 99.6 5.7E-15 1.2E-19 154.4 16.1 149 3-162 2-163 (168)
429 KOG0080|consensus 99.6 2.7E-15 5.9E-20 143.8 12.1 154 3-167 12-178 (209)
430 smart00174 RHO Rho (Ras homolo 99.6 4.1E-15 8.9E-20 156.4 15.0 147 5-162 1-171 (174)
431 cd04148 RGK RGK subfamily. Th 99.6 7.5E-15 1.6E-19 160.2 17.5 153 183-353 1-163 (221)
432 cd01871 Rac1_like Rac1-like su 99.6 7.6E-15 1.6E-19 154.3 16.9 147 3-160 2-172 (174)
433 cd04126 Rab20 Rab20 subfamily. 99.6 7.2E-15 1.6E-19 159.1 17.1 147 4-163 2-190 (220)
434 TIGR02034 CysN sulfate adenyly 99.6 2.3E-15 5.1E-20 178.6 14.4 152 183-345 1-189 (406)
435 KOG1490|consensus 99.6 1.8E-15 4E-20 170.0 12.6 193 182-377 168-368 (620)
436 TIGR01394 TypA_BipA GTP-bindin 99.6 4.9E-15 1.1E-19 181.8 17.4 145 184-340 3-168 (594)
437 PLN03108 Rab family protein; P 99.6 1.4E-14 3E-19 157.1 19.1 151 3-164 7-169 (210)
438 PRK10218 GTP-binding protein; 99.6 7E-15 1.5E-19 180.0 18.6 148 182-341 5-173 (607)
439 COG2262 HflX GTPases [General 99.6 8.5E-15 1.9E-19 163.9 17.5 163 181-355 191-358 (411)
440 cd04132 Rho4_like Rho4-like su 99.6 8.5E-15 1.8E-19 156.0 17.0 151 4-165 2-169 (187)
441 cd01875 RhoG RhoG subfamily. 99.6 1.1E-14 2.4E-19 155.4 17.9 151 3-164 4-178 (191)
442 KOG0093|consensus 99.6 7E-15 1.5E-19 138.8 14.0 151 2-165 21-185 (193)
443 cd04147 Ras_dva Ras-dva subfam 99.6 6.4E-15 1.4E-19 158.4 15.8 149 4-163 1-163 (198)
444 KOG0087|consensus 99.6 3.2E-15 7E-20 151.6 12.4 157 180-352 12-175 (222)
445 PF14714 KH_dom-like: KH-domai 99.6 5.5E-16 1.2E-20 137.4 5.9 78 358-436 1-78 (80)
446 PRK05506 bifunctional sulfate 99.6 2.9E-15 6.4E-20 188.0 14.8 154 181-345 23-213 (632)
447 CHL00189 infB translation init 99.6 6.3E-15 1.4E-19 182.2 17.3 150 2-161 244-408 (742)
448 cd00876 Ras Ras family. The R 99.6 1.3E-14 2.9E-19 149.9 17.2 146 4-161 1-159 (160)
449 TIGR01393 lepA GTP-binding pro 99.6 1.2E-14 2.6E-19 179.0 19.7 155 3-166 4-183 (595)
450 TIGR00483 EF-1_alpha translati 99.6 4.7E-15 1E-19 178.0 15.7 157 180-347 5-201 (426)
451 cd01893 Miro1 Miro1 subfamily. 99.6 1.2E-14 2.5E-19 151.8 16.4 147 4-162 2-163 (166)
452 cd04130 Wrch_1 Wrch-1 subfamil 99.6 8.6E-15 1.9E-19 153.9 15.3 145 4-159 2-170 (173)
453 KOG1489|consensus 99.6 2.8E-15 6.1E-20 160.5 11.6 155 3-160 197-364 (366)
454 KOG0095|consensus 99.6 6.2E-15 1.3E-19 139.1 12.5 153 2-164 7-170 (213)
455 TIGR00475 selB selenocysteine- 99.6 8.3E-15 1.8E-19 180.5 17.6 152 4-164 2-167 (581)
456 smart00176 RAN Ran (Ras-relate 99.6 9.6E-15 2.1E-19 156.1 15.8 150 188-354 1-155 (200)
457 KOG0462|consensus 99.6 6.1E-15 1.3E-19 167.7 14.9 162 182-356 60-238 (650)
458 PRK12317 elongation factor 1-a 99.6 5.9E-15 1.3E-19 177.3 15.7 141 4-153 8-195 (425)
459 TIGR03680 eif2g_arch translati 99.6 9.2E-15 2E-19 173.7 17.1 160 181-351 3-194 (406)
460 COG0536 Obg Predicted GTPase [ 99.6 8.3E-15 1.8E-19 159.3 15.0 164 184-355 161-335 (369)
461 cd04134 Rho3 Rho3 subfamily. 99.6 9.2E-15 2E-19 155.9 15.3 151 3-164 1-175 (189)
462 cd01873 RhoBTB RhoBTB subfamil 99.6 1.5E-14 3.3E-19 154.3 16.9 155 182-350 2-193 (195)
463 PRK05433 GTP-binding protein L 99.6 1.2E-14 2.6E-19 179.2 18.2 159 182-353 7-184 (600)
464 cd00880 Era_like Era (E. coli 99.6 1.6E-14 3.5E-19 148.5 16.4 153 7-161 1-162 (163)
465 cd04169 RF3 RF3 subfamily. Pe 99.6 2.3E-14 5E-19 160.0 18.6 114 183-307 3-137 (267)
466 smart00176 RAN Ran (Ras-relate 99.6 1.6E-14 3.6E-19 154.3 16.7 146 8-164 1-155 (200)
467 cd04148 RGK RGK subfamily. Th 99.6 2E-14 4.4E-19 156.8 17.7 149 3-164 1-164 (221)
468 cd04155 Arl3 Arl3 subfamily. 99.6 2E-14 4.4E-19 151.0 17.1 145 3-160 15-172 (173)
469 cd01888 eIF2_gamma eIF2-gamma 99.6 1.5E-14 3.2E-19 155.9 16.1 153 4-165 2-201 (203)
470 PRK12739 elongation factor G; 99.6 1.4E-14 3E-19 183.3 18.3 146 181-338 7-169 (691)
471 cd01870 RhoA_like RhoA-like su 99.6 1.5E-14 3.3E-19 152.2 15.7 149 2-161 1-173 (175)
472 PRK13796 GTPase YqeH; Provisio 99.6 1E-14 2.2E-19 170.1 15.7 145 76-243 62-223 (365)
473 COG1163 DRG Predicted GTPase [ 99.6 3.5E-15 7.5E-20 160.7 10.7 157 181-352 62-288 (365)
474 cd04159 Arl10_like Arl10-like 99.6 2.8E-14 6E-19 147.0 17.3 144 5-160 2-158 (159)
475 KOG0080|consensus 99.6 6.2E-15 1.3E-19 141.3 11.2 155 182-353 11-174 (209)
476 COG1161 Predicted GTPases [Gen 99.6 8.8E-15 1.9E-19 167.3 14.6 166 70-244 22-191 (322)
477 KOG0093|consensus 99.6 1.8E-14 4E-19 136.0 14.0 157 182-354 21-184 (193)
478 cd04135 Tc10 TC10 subfamily. 99.6 1.4E-14 3.1E-19 152.3 15.2 147 4-161 2-172 (174)
479 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.2E-14 2.6E-19 151.3 14.2 143 5-160 2-163 (164)
480 KOG0079|consensus 99.6 9.4E-15 2E-19 138.0 11.9 149 3-164 9-170 (198)
481 PRK09866 hypothetical protein; 99.6 1.3E-13 2.7E-18 162.6 24.0 117 229-351 229-351 (741)
482 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.9E-14 4.1E-19 149.8 15.5 150 185-349 2-162 (164)
483 cd04161 Arl2l1_Arl13_like Arl2 99.6 3.1E-14 6.7E-19 148.7 17.1 144 4-160 1-166 (167)
484 PTZ00141 elongation factor 1- 99.6 1.3E-14 2.8E-19 173.4 16.2 153 180-343 5-203 (446)
485 cd04129 Rho2 Rho2 subfamily. 99.6 1.6E-14 3.5E-19 153.8 15.3 158 183-353 2-173 (187)
486 PRK04000 translation initiatio 99.6 1.9E-14 4.2E-19 170.7 17.4 162 180-352 7-200 (411)
487 TIGR00491 aIF-2 translation in 99.6 1.7E-14 3.7E-19 176.1 17.3 148 2-160 4-213 (590)
488 COG0731 Fe-S oxidoreductases [ 99.6 6.4E-14 1.4E-18 153.1 19.7 205 625-849 33-248 (296)
489 cd04137 RheB Rheb (Ras Homolog 99.6 4E-14 8.6E-19 149.8 17.8 150 3-164 2-164 (180)
490 PRK10512 selenocysteinyl-tRNA- 99.6 2.9E-14 6.3E-19 176.0 19.1 152 4-164 2-167 (614)
491 PRK00007 elongation factor G; 99.6 1.5E-14 3.3E-19 182.7 16.8 145 182-338 10-171 (693)
492 cd00157 Rho Rho (Ras homology) 99.6 1.8E-14 4E-19 150.9 14.7 146 4-160 2-170 (171)
493 KOG0079|consensus 99.6 1.7E-14 3.7E-19 136.3 12.3 159 182-355 8-171 (198)
494 cd04104 p47_IIGP_like p47 (47- 99.6 3.2E-14 6.9E-19 152.5 16.0 166 182-357 1-188 (197)
495 cd01876 YihA_EngB The YihA (En 99.6 5.5E-14 1.2E-18 146.5 17.3 154 5-161 2-169 (170)
496 cd04170 EF-G_bact Elongation f 99.6 3E-14 6.4E-19 160.6 16.1 113 184-307 1-130 (268)
497 cd01899 Ygr210 Ygr210 subfamil 99.6 3E-14 6.4E-19 161.9 15.9 160 5-167 1-273 (318)
498 cd04168 TetM_like Tet(M)-like 99.6 5.6E-14 1.2E-18 154.3 17.3 113 4-125 1-130 (237)
499 PRK04004 translation initiatio 99.6 4.4E-14 9.4E-19 173.5 18.2 157 181-350 5-215 (586)
500 KOG0095|consensus 99.6 4.1E-14 8.9E-19 133.6 13.7 156 182-352 7-168 (213)
No 1
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=6.5e-103 Score=871.78 Aligned_cols=341 Identities=36% Similarity=0.618 Sum_probs=319.3
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCC-ceEEEEEeC-CC
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDG-TRKWIFHVK-KN 603 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~-t~k~l~~~~-~~ 603 (1250)
.+.+++++.+.|+|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..+++++.+.|.|| |+||||+|+ |+
T Consensus 15 ~~el~~~~~~~g~~~fRa~Qi~~wiy~~~~~~~~~mtnlpk~lR~~L~~~~~i~~l~~~~~~~S~Dg~T~K~L~~l~DG~ 94 (371)
T PRK14461 15 LAELTELLTAWGQPAFRARQLYRHLYVNLADSVLAMTDLPLALRERLTAELPLSTLRLEQVQIGDNGLTRKALFRLPDGA 94 (371)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHccccCHHHHHHHhhccccCCcceEEEEECCCCCeEEEEEEcCCCC
Confidence 3467788989999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred eEEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhc-cc-cCCCCCCcceeee
Q psy17091 604 IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI-KI-NSQGKRQITNIVM 681 (1250)
Q Consensus 604 ~ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~-~~-~~~~~~~~~~ivf 681 (1250)
.||||+||+++|+|+||||||||+|+|+|||||++||.||||++||++||+.+++.++..... +. ..+...+++||||
T Consensus 95 ~IEtVli~~~~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVf 174 (371)
T PRK14461 95 VVETVLMIYPDRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVF 174 (371)
T ss_pred EEEEEEEecCCCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEE
Confidence 999999999999999999999999999999999999999999999999999998876411000 00 0011146999999
Q ss_pred cccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhh-CCCeEEEEccCCChhhhhccCCCCCCCCH
Q psy17091 682 MGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPL 760 (1250)
Q Consensus 682 mg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~~~~~~~ 760 (1250)
|||||||+|||+|++|++++++++||+||+|||||||||++|+|++|+++ .+++||||||||||++|++|||+|++||+
T Consensus 175 MGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl 254 (371)
T PRK14461 175 MGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPI 254 (371)
T ss_pred EccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCH
Confidence 99999999999999999999999999999999999999999999999997 59999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCcc------ceeEeeeccCCCCCCCCCCCcHHH
Q psy17091 761 KELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT------SCKINLIPFNCFPNSNLICSKNSR 834 (1250)
Q Consensus 761 ~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~------~~~vnlip~n~~~~~~~~~p~~e~ 834 (1250)
++|+++|++|..+++ |||||||+||+||||+++||++|++++++ + +|+||||||||+++.+|++|+.++
T Consensus 255 ~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~----~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~ 329 (371)
T PRK14461 255 ADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRG----EAPPGPLLVHVNLIPWNPVPGTPLGRSERER 329 (371)
T ss_pred HHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcC----CccccCCceEEEEecCCCCCCCCCCCCCHHH
Confidence 999999999998876 59999999999999999999999999999 7 899999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccc
Q psy17091 835 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEET 871 (1250)
Q Consensus 835 i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~ 871 (1250)
+++|+++|+++|+.++||.++|.||+||||||+.++.
T Consensus 330 i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~~~~~ 366 (371)
T PRK14461 330 VTTFQRILTDYGIPCTVRVERGVEIAAACGQLAGRHT 366 (371)
T ss_pred HHHHHHHHHHCCceEEEeCCCCcChhhcCcccccCCC
Confidence 9999999999999999999999999999999998763
No 2
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=100.00 E-value=9.9e-97 Score=807.98 Aligned_cols=332 Identities=50% Similarity=0.824 Sum_probs=318.9
Q ss_pred hhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEE-eC-CCeE
Q psy17091 528 IDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFH-VK-KNII 605 (1250)
Q Consensus 528 ~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~-~~-~~~v 605 (1250)
....++...|+++|||+|+|+|+|++++.+|++||||||.+|++|++.|.+..++++..+.|.|||+||||+ ++ |..|
T Consensus 11 ~~~~~~~~~g~~~fra~Qi~~W~y~~~~~~f~~Mtnl~k~~r~~L~~~~~~~~~~~~~~~~s~dGT~K~l~~~l~dg~~i 90 (349)
T COG0820 11 ELAEWLAELGLKKFRAKQLFKWIYQKGVDDFDEMTDLSKGLRAKLKEAFFINLLKVVEVQESSDGTIKWLFEVLPDGTMI 90 (349)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHhccCHHHhccccHHHHHHHHHhhccccceEEEEEEcCCCCEEEEEEEcCCCCEE
Confidence 456777889999999999999999999999999999999999999999999999999999999999999999 77 9999
Q ss_pred EEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccC
Q psy17091 606 ETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMG 685 (1250)
Q Consensus 606 e~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~G 685 (1250)
|||+||+.+|+|+||||||||+|+|.|||||+.||.||||++||++|++.+.+.+++ ..+++++||||||||
T Consensus 91 EtV~ip~~~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~--------~~~~~i~NVV~MGMG 162 (349)
T COG0820 91 ETVLIPEKDRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGE--------DFGRRISNVVFMGMG 162 (349)
T ss_pred EEEEEEecCCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCc--------cccceeeeEEEecCC
Confidence 999999999999999999999999999999999999999999999999999988752 125789999999999
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhh-hCCCeEEEEccCCChhhhhccCCCCCCCCHHHHH
Q psy17091 686 EPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQ-ECPVELAVSLHASNNNLRNKLVPISKKYPLKELI 764 (1250)
Q Consensus 686 Epl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~-~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~ 764 (1250)
|||+|||+|.+|+++++++.|+++|.|||||||||++|.|.++++ .+++.||+||||+|+++|++|||+|++||+++++
T Consensus 163 EPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~ 242 (349)
T COG0820 163 EPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELL 242 (349)
T ss_pred chhhhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHH
Confidence 999999999999999999999999999999999999999999996 4799999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHHHHh
Q psy17091 765 LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMN 844 (1250)
Q Consensus 765 ~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~iL~~ 844 (1250)
+++++|...++ +||||||+|++||||+.++|++|++++++ ++|+||||||||+++.+|++|+.+++..|.++|.+
T Consensus 243 ~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~----~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~~ 317 (349)
T COG0820 243 EAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKG----IPCKVNLIPYNPVPGSDYERSSKERIRKFLKILKK 317 (349)
T ss_pred HHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcC----CCceEEEeecCCCCCCCccCCcHHHHHHHHHHHHh
Confidence 99999998886 59999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCeEEEeccCccchHHhhhhcCCcccc
Q psy17091 845 SGIFVTIRKIRGNDINAACGQLSGEETD 872 (1250)
Q Consensus 845 ~G~~~~ir~~~g~~i~~acgql~~~~~~ 872 (1250)
+|+.++||.++|.||+||||||+.+..+
T Consensus 318 ~gv~~tvR~~~g~DIdaACGQL~~~~~~ 345 (349)
T COG0820 318 AGVLVTVRKTRGDDIDAACGQLRGKRIK 345 (349)
T ss_pred CCeeEEeccccccccccccchhhhhhch
Confidence 9999999999999999999999987643
No 3
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.3e-92 Score=802.02 Aligned_cols=335 Identities=36% Similarity=0.597 Sum_probs=317.0
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCC-ceEEEEEeC-CC
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDG-TRKWIFHVK-KN 603 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~-t~k~l~~~~-~~ 603 (1250)
...+++++.++|+|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..++++..+.|.|| |+||||+|+ |+
T Consensus 29 ~~el~~~~~~~g~~~~ra~Qi~~wiy~~~~~~~~~mt~l~k~~r~~L~~~~~~~~~~~~~~~~s~dg~t~K~l~~l~Dg~ 108 (373)
T PRK14459 29 PAERREAVAELGLPAFRAKQLARHYFGRLTADPAQMTDLPAAAREELAEALFPTLLTPVRTLEADDGTTRKTLWRLHDGT 108 (373)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhcCCCCHHHhcccCHHHHHHHHhhcccCCceEEEEEEcCCCCEEEEEEEcCCCC
Confidence 4567889999999999999999999999999999999999999999999999999999999999999 999999999 99
Q ss_pred eEEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecc
Q psy17091 604 IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG 683 (1250)
Q Consensus 604 ~ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg 683 (1250)
.||||+||+++|+|+||||||||+|+|.|||||++|+.||||++||++||+.+.+++.... ..+++.+++||||||
T Consensus 109 ~iEtV~i~~~~~~tlCvSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~----~~~~~~~i~nVvfmG 184 (373)
T PRK14459 109 LVESVLMRYPDRATLCISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGE----VPGGPGRLSNVVFMG 184 (373)
T ss_pred EEEEEEEEEcCCceEEEEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcc----cccCCCceeEEEEec
Confidence 9999999999999999999999999999999999999999999999999999988774100 002345799999999
Q ss_pred cCccCCCHHHHHHHHHHhhc--CCCCCCCCceEEEEecCchhHHHHhhhh-CCCeEEEEccCCChhhhhccCCCCCCCCH
Q psy17091 684 MGEPLLNYKSTIGALKLILS--DHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPL 760 (1250)
Q Consensus 684 ~GEpl~n~~~v~~~~~~~~~--~~~~~~~~~~itvsT~g~~~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~~~~~~~ 760 (1250)
|||||+||++|+++++.+++ ++|++||.|||||||+|++|.|++|+++ ++++||+||||+|+++|++|||+|++||+
T Consensus 185 mGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l 264 (373)
T PRK14459 185 MGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKV 264 (373)
T ss_pred CCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCH
Confidence 99999999999999999999 7899999999999999999999999987 58899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCcc---ceeEeeeccCCCCCCCCCCCcHHHHHH
Q psy17091 761 KELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT---SCKINLIPFNCFPNSNLICSKNSRIKI 837 (1250)
Q Consensus 761 ~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~---~~~vnlip~n~~~~~~~~~p~~e~i~~ 837 (1250)
+++++++++|...++ ++|||||+||+|+||+++||++|++|+++ + +++||||||||+++.+|++|+.+.+++
T Consensus 265 ~~ll~a~~~~~~~~g-rrv~ieyvLi~GvNDs~e~a~~L~~llk~----~~~~~~~VNLIpyNp~~~~~y~~~~~~~~~~ 339 (373)
T PRK14459 265 DEVLDAARYYADATG-RRVSIEYALIRDINDQPWRADLLGKKLHG----RGGGWVHVNLIPLNPTPGSKWTASPPEVERE 339 (373)
T ss_pred HHHHHHHHHHHHHhC-CEEEEEEEEeCCCCCCHHHHHHHHHHHhh----ccCCCeEEEEEccCCCCCCCCcCCCHHHHHH
Confidence 999999999998776 59999999999999999999999999999 7 799999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEeccCccchHHhhhhcCCc
Q psy17091 838 FAKILMNSGIFVTIRKIRGNDINAACGQLSGE 869 (1250)
Q Consensus 838 f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~ 869 (1250)
|+++|+++|+.|+||.++|.||+||||||+.+
T Consensus 340 F~~~L~~~gi~~tiR~~~G~dI~aACGQL~~~ 371 (373)
T PRK14459 340 FVRRLRAAGVPCTVRDTRGQEIDGACGQLAAE 371 (373)
T ss_pred HHHHHHHCCCeEEeeCCCCcCHhhcCCccccc
Confidence 99999999999999999999999999999763
No 4
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.4e-91 Score=796.04 Aligned_cols=334 Identities=50% Similarity=0.862 Sum_probs=319.9
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEEeCCCeE
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNII 605 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~~~~~~v 605 (1250)
.+.+++++.+.|+|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..++++..+.|.|||+||||+|+++.|
T Consensus 13 ~~el~~~~~~~g~~~~ra~qi~~w~y~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~K~l~~l~D~~i 92 (372)
T PRK11194 13 RQQMREFFAELGEKPFRADQVMKWIYHYGCDDFDEMTNINKVLREKLKEVAEIRAPEVAEEQRSSDGTIKWAIAVGDQRV 92 (372)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhcccccCCcccceEEEcCCCeEEEEEEcCCCeE
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCC--CCCCcceeeecc
Q psy17091 606 ETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ--GKRQITNIVMMG 683 (1250)
Q Consensus 606 e~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~ivfmg 683 (1250)
|||+||+++|+|+||||||||||+|.|||||++|+.||||++||++||+.++.+++. ++ +|.+++||||||
T Consensus 93 EsV~~~~~~~~t~CvSsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~-------~~~~gg~~~~nvV~mG 165 (372)
T PRK11194 93 ETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGA-------AKVTGQRPITNVVMMG 165 (372)
T ss_pred EEEEEEcCCCeeEEEecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhh-------ccccCCcccceEEEec
Confidence 999999999999999999999999999999999999999999999999999998851 22 345799999999
Q ss_pred cCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHH
Q psy17091 684 MGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKEL 763 (1250)
Q Consensus 684 ~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l 763 (1250)
|||||+|||||.+++++++++.||++|+|||||||||++|.|++++++.+++||+||||+|+++|++|||+|++||++++
T Consensus 166 mGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~l 245 (372)
T PRK11194 166 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETF 245 (372)
T ss_pred CCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCchHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC--CceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHH
Q psy17091 764 ILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKI 841 (1250)
Q Consensus 764 ~~~~~~~~~~~~--~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~i 841 (1250)
++++++|..+++ +++|||||+|||||||+++||++|++|+++ ++++||||||||+++.+|++|+++.+++|.++
T Consensus 246 l~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~----l~~~VnLIPYN~~~~~~~~~ps~e~v~~f~~~ 321 (372)
T PRK11194 246 LAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKD----TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKV 321 (372)
T ss_pred HHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhc----CCceEEEecCCCCCCCCCCCCCHHHHHHHHHH
Confidence 999999998874 369999999999999999999999999999 88999999999999999999999999999999
Q ss_pred HHhCCCeEEEeccCccchHHhhhhcCCcc
Q psy17091 842 LMNSGIFVTIRKIRGNDINAACGQLSGEE 870 (1250)
Q Consensus 842 L~~~G~~~~ir~~~g~~i~~acgql~~~~ 870 (1250)
|+++|+.+++|.++|.||+||||||+.+.
T Consensus 322 L~~~Gi~vtiR~~~G~di~aaCGQL~~~~ 350 (372)
T PRK11194 322 LMEYGFTVIVRKTRGDDIDAACGQLAGDV 350 (372)
T ss_pred HHHCCCeEEEecCCCCcchhcCcCcHhhh
Confidence 99999999999999999999999998755
No 5
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=5.8e-91 Score=782.72 Aligned_cols=326 Identities=33% Similarity=0.548 Sum_probs=311.8
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEEeC-CCe
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK-KNI 604 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~~ 604 (1250)
.+.+++++.++|+|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..++++..+.|.|||+||||+|+ |+.
T Consensus 12 ~~~l~~~~~~~g~~~fra~Qi~~wiy~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~K~l~~l~Dg~~ 91 (342)
T PRK14465 12 LKELSEIMVSLGEKKFRAKQIYHGLYVNRYETWDQFTTFSKEVKEKLEELCSLTELEVVKDLKSVDGTQKFTFYSGEGKE 91 (342)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHhcccccCCccEEEEEEcCCCcEEEEEEcCCCCE
Confidence 3467888989999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEeccC--CCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeec
Q psy17091 605 IETVFIPEK--NRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMM 682 (1250)
Q Consensus 605 ve~v~~~~~--~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfm 682 (1250)
||||+||++ +|+|+||||||||+|+|.||+||++|+.|||+++||++|++.+.+.+. .+++|||||
T Consensus 92 iEtV~i~~~~~~~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~------------~~~~niVFm 159 (342)
T PRK14465 92 FEAVWIPSGDGGRKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVG------------DRATNVVFM 159 (342)
T ss_pred EEEEEeEecCCCceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcC------------CCceEEEEE
Confidence 999999985 679999999999999999999999999999999999999999887653 469999999
Q ss_pred ccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhh-CCCeEEEEccCCChhhhhccCCCCCCCCHH
Q psy17091 683 GMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPLK 761 (1250)
Q Consensus 683 g~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~~~~~~~~ 761 (1250)
||||||+|||+|+++++.++++.|+++|++||||||||++|.|.+++++ .+++|||||||+|++.|++|||+|++||++
T Consensus 160 GmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le 239 (342)
T PRK14465 160 GMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLE 239 (342)
T ss_pred cCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHH
Confidence 9999999999999999999999999999999999999999999999975 589999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHH
Q psy17091 762 ELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKI 841 (1250)
Q Consensus 762 ~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~i 841 (1250)
++++++++|.+++++ +|||||+|||||||+++||++|++|+++ ++++||||||||. +.+|++|+++++++|+++
T Consensus 240 ~ll~al~~~~~~~~r-~v~ieyvLI~GvNDs~eda~~L~~ll~~----l~~kVnLIPyN~~-~~~~~~ps~e~i~~F~~~ 313 (342)
T PRK14465 240 ELLQAAKDFTRELKR-RITFEYVMIPGVNMGRENANKLVKIARS----LDCKINVIPLNTE-FFGWRRPTDDEVAEFIML 313 (342)
T ss_pred HHHHHHHHHHHHcCC-EEEEEEEEECCccCCHHHHHHHHHHHhh----CCCcEEEEccCCC-CCCCCCCCHHHHHHHHHH
Confidence 999999999988764 9999999999999999999999999999 8899999999996 579999999999999999
Q ss_pred HHhCCCeEEEeccCccchHHhhhhcCCc
Q psy17091 842 LMNSGIFVTIRKIRGNDINAACGQLSGE 869 (1250)
Q Consensus 842 L~~~G~~~~ir~~~g~~i~~acgql~~~ 869 (1250)
|+++|+.++||.++|.||+||||||+.+
T Consensus 314 L~~~Gi~v~~R~~~G~di~aACGqL~~~ 341 (342)
T PRK14465 314 LEPAGVPILNRRSPGKDIFGACGMLASK 341 (342)
T ss_pred HHHCCCeEEEeCCCCcChhhcCCccccC
Confidence 9999999999999999999999999763
No 6
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=6.8e-91 Score=786.33 Aligned_cols=325 Identities=34% Similarity=0.578 Sum_probs=308.5
Q ss_pred hhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEEeC-CCeEE
Q psy17091 528 IDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK-KNIIE 606 (1250)
Q Consensus 528 ~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~~ve 606 (1250)
.+++++ .|+|||+|||+|||++++.+|++|||||+++|+.|++.|.+..+++++.+.|.|||+||||+|+ |+.||
T Consensus 12 el~~~~----~~~~ra~qi~~~~~~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~K~l~~l~Dg~~iE 87 (356)
T PRK14462 12 ELSELL----KPSFRAKQIYQWLYAKYATSFDDMKNLPKDLREYLAQEFTLDPLKIVKVEQSKDGSKKYLFKLRDGHTVE 87 (356)
T ss_pred HHHHHh----ccchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhhccccCCcceEEEEEcCCCeEEEEEEcCCCCEEE
Confidence 455566 4999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEEeccC-------------CCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCC
Q psy17091 607 TVFIPEK-------------NRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK 673 (1250)
Q Consensus 607 ~v~~~~~-------------~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~ 673 (1250)
||+||++ +|+|+||||||||||+|.||+||++|+.||||++||++||+.+++++.. .+
T Consensus 88 tV~i~~~~~~~~~~~~~~~~~r~t~CvSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~---------~~ 158 (356)
T PRK14462 88 AVLLKMKDEKIDEEGKILEHAKYTVCVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNI---------PY 158 (356)
T ss_pred EEEeeccccccccccccccCCCceEeeeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhc---------cc
Confidence 9999976 6899999999999999999999999999999999999999999887641 11
Q ss_pred CCcceeeecccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhh-CCCeEEEEccCCChhhhhccC
Q psy17091 674 RQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLV 752 (1250)
Q Consensus 674 ~~~~~ivfmg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~ 752 (1250)
.+++|||||||||||+|||||++++++|+++.|+++|+|||||||||++|.|++|+++ ++++||+||||+|+++|++||
T Consensus 159 ~~~~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~ 238 (356)
T PRK14462 159 EKRVNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSELM 238 (356)
T ss_pred cccCCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHHhC
Confidence 3588999999999999999999999999999999999999999999999999999986 579999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcH
Q psy17091 753 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKN 832 (1250)
Q Consensus 753 p~~~~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~ 832 (1250)
|+|++||+++|++++++|..+++ ++|||||+|||||||+++||++|++|+++ ++++||||||||+++.+|++|+.
T Consensus 239 pv~~~~~l~~ll~~l~~y~~~~~-~~i~ieyvLI~GvNDs~e~a~~La~llk~----l~~~VnLIPyn~~~~~~~~~ps~ 313 (356)
T PRK14462 239 PINKAYNIESIIDAVRKFPIDQR-KRVMFEYLVIKDVNDDLKSAKKLVKLLNG----IKAKVNLILFNPHEGSKFERPSL 313 (356)
T ss_pred CCCccCCHHHHHHHHHHHHHHhC-CeEEEEEEEECCCCCCHHHHHHHHHHHhh----cCcEEEEEeCCCCCCCCCCCCCH
Confidence 99999999999999999997775 59999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCcc
Q psy17091 833 SRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEE 870 (1250)
Q Consensus 833 e~i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~ 870 (1250)
+.+++|+++|+++|+.++||.++|.||+||||||+.+.
T Consensus 314 e~i~~f~~~l~~~gi~vtvR~~~G~dI~aACGQL~~~~ 351 (356)
T PRK14462 314 EDMIKFQDYLNSKGLLCTIRESKGLDISAACGQLREKK 351 (356)
T ss_pred HHHHHHHHHHHHCCCcEEEeCCCCCchhhcCccchhhh
Confidence 99999999999999999999999999999999998654
No 7
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2e-90 Score=774.61 Aligned_cols=328 Identities=38% Similarity=0.670 Sum_probs=314.5
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEEeC-CCe
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK-KNI 604 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~~ 604 (1250)
.+.+++++.+.|+|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..+++...+.|.|||+||||+++ |..
T Consensus 12 ~~el~~~~~~~g~~~fra~Qi~~wi~~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~K~l~~l~dg~~ 91 (345)
T PRK14466 12 LEELQSVAKRLGMPAFAAKQIASWLYDKKVTSIDEMTNISLAHREKLAEEYEIGAYAPVDEQRSVDGTIKYLFPVGEGHF 91 (345)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHHhhhhHHHHHhhcCCeEecCceEEEEEEcCCCeEEEEEEcCCCCE
Confidence 3467888999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeeccc
Q psy17091 605 IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM 684 (1250)
Q Consensus 605 ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~ 684 (1250)
||||+||++.|+|+||||||||+|+|.||+||++|+.||||++||++|+..+... ..++|||||||
T Consensus 92 iEsVlip~~~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~--------------~~i~nIvfmGm 157 (345)
T PRK14466 92 VESVYIPEEDRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER--------------DKLTNLVFMGM 157 (345)
T ss_pred EEEEEEecCCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc--------------CCCCeEEEeee
Confidence 9999999999999999999999999999999999999999999999999977431 25899999999
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHH
Q psy17091 685 GEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELI 764 (1250)
Q Consensus 685 GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~ 764 (1250)
||||+||++|+++++.++++.|+++|+|+|||||||++|+|++++++.+++||+||||+|+++|++|||+|++||+++|+
T Consensus 158 GEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~ 237 (345)
T PRK14466 158 GEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEII 237 (345)
T ss_pred CcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHHHHh
Q psy17091 765 LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMN 844 (1250)
Q Consensus 765 ~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~iL~~ 844 (1250)
+++++|.+.+++ +|||||+||+||||+++||++|++++++ ++++||||||||+++.+|++|+.+++++|+++|++
T Consensus 238 ~al~~y~~~~~r-ri~~Ey~Li~gvND~~e~a~~L~~ll~~----~~~~VNLIp~Np~~~~~~~~~s~~~~~~F~~~L~~ 312 (345)
T PRK14466 238 DLLKNYDFSKQR-RVSFEYIVFKGLNDSLKHAKELVKLLRG----IDCRVNLIRFHAIPGVDLEGSDMARMEAFRDYLTS 312 (345)
T ss_pred HHHHHHHHhhCC-EEEEEEEEeCCCCCCHHHHHHHHHHHcC----CCceEEEEecCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 999999988765 9999999999999999999999999999 88999999999999999999999999999999999
Q ss_pred CCCeEEEeccCccchHHhhhhcCCcccc
Q psy17091 845 SGIFVTIRKIRGNDINAACGQLSGEETD 872 (1250)
Q Consensus 845 ~G~~~~ir~~~g~~i~~acgql~~~~~~ 872 (1250)
+|+.++||.++|.||+||||||+....+
T Consensus 313 ~gi~~tvR~s~G~dI~aACGQL~~~~~~ 340 (345)
T PRK14466 313 HGVFTTIRASRGEDIFAACGMLSTAKQE 340 (345)
T ss_pred CCCcEEEeCCCCCchhhcCccchhhhhh
Confidence 9999999999999999999999876543
No 8
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.5e-89 Score=777.51 Aligned_cols=327 Identities=41% Similarity=0.648 Sum_probs=311.9
Q ss_pred chhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEEeC-CCeE
Q psy17091 527 SIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK-KNII 605 (1250)
Q Consensus 527 ~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~~v 605 (1250)
+.+++++.+.|+|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..+++. .+.|.|||+||||+|+ |+.|
T Consensus 10 ~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~-~~~~~dgt~K~l~~~~dg~~v 88 (348)
T PRK14467 10 EELEEFVVELGWEKYRAKQIAKWVYKKKVTDFDEMTDLSKEDRQLLKENFEFHTLELL-DRVEADDSVKYLFKTKDGHTI 88 (348)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhcCcccCCceee-EEEcCCCeEEEEEEcCCCCEE
Confidence 4577888899999999999999999999999999999999999999999999999998 6677899999999999 9999
Q ss_pred EEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccC
Q psy17091 606 ETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMG 685 (1250)
Q Consensus 606 e~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~G 685 (1250)
|||+||+.+|+|+||||||||||+|.|||||++|+.||||++||++||+.++.+++ +.+++||||||||
T Consensus 89 E~V~i~~~~~~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~-----------~~~v~~VvfmGmG 157 (348)
T PRK14467 89 ETVLIKERDHLTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLG-----------ENRIRNVVFMGMG 157 (348)
T ss_pred EEEEEEeCCCcEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhc-----------cCCCCeEEEEccC
Confidence 99999999999999999999999999999999999999999999999999998874 2458999999999
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhhC---CCeEEEEccCCChhhhhccCCCCCCCCHHH
Q psy17091 686 EPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC---PVELAVSLHASNNNLRNKLVPISKKYPLKE 762 (1250)
Q Consensus 686 Epl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~~---~~~la~sl~~~~~~~r~~~~p~~~~~~~~~ 762 (1250)
|||+|||||+++++.|+++.|+++|.|||||||||++|.|++++.+. ++.||+||||+|+++|++|||++++|++++
T Consensus 158 EPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~LalSLha~~~e~r~~i~p~~~~~~l~~ 237 (348)
T PRK14467 158 EPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVSLNASSQKLRERIMPISKTNTLEE 237 (348)
T ss_pred hhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEEEECCCCCHHHHHHhcCCccccCHHH
Confidence 99999999999999999999999999999999999999999999763 789999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccc--eeEeeeccCCCCCCCCCCCcHHHHHHHHH
Q psy17091 763 LILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTS--CKINLIPFNCFPNSNLICSKNSRIKIFAK 840 (1250)
Q Consensus 763 l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~--~~vnlip~n~~~~~~~~~p~~e~i~~f~~ 840 (1250)
+++++++|..++++ +|||||+||||+||+++||++||+|+++ ++ ++||||||||+++.+|++|+.+.+++|++
T Consensus 238 l~~~~~~~~~~~g~-~V~ieyvLIpGvNDs~e~a~~La~~l~~----l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~ 312 (348)
T PRK14467 238 LMEVLKQYPLPPGR-RIMLEYVLIKGVNDSPEDALRLAQLIGK----NKKKFKVNLIPFNPDPELPYERPELERVYKFQK 312 (348)
T ss_pred HHHHHHHHHHhcCC-eEEEEEEEECCccCCHHHHHHHHHHHhc----CCCceEEEEecCCCCCCCCCCCCCHHHHHHHHH
Confidence 99999999987764 9999999999999999999999999998 64 89999999999999999999999999999
Q ss_pred HHHhCCCeEEEeccCccchHHhhhhcCCcc
Q psy17091 841 ILMNSGIFVTIRKIRGNDINAACGQLSGEE 870 (1250)
Q Consensus 841 iL~~~G~~~~ir~~~g~~i~~acgql~~~~ 870 (1250)
+|+++|+.+++|.++|.||+||||||+.+.
T Consensus 313 ~L~~~gi~v~vR~~~G~di~aaCGqL~~~~ 342 (348)
T PRK14467 313 ILWDNGISTFVRWSKGVDIFGACGQLRKKR 342 (348)
T ss_pred HHHHCCCcEEEeCCCCcchhhcccchhHhh
Confidence 999999999999999999999999997654
No 9
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.6e-88 Score=771.37 Aligned_cols=328 Identities=45% Similarity=0.747 Sum_probs=315.5
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcC-CCceEEEEEeC-CC
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISF-DGTRKWIFHVK-KN 603 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~-d~t~k~l~~~~-~~ 603 (1250)
.+.+++++.+.|.|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..+++++++.|. |||+||||+|+ |.
T Consensus 9 ~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~~dgt~k~l~~~~dg~ 88 (342)
T PRK14454 9 LEELKEWMKENGEKKFRAKQIFDWIYKKGVTDFDEMTNIPKNLREKLKENFYIGIPKIVKKLVSKIDGTVKFLFELEDGN 88 (342)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHHhceecCCccEEEEEEecCCCeEEEEEEcCCCC
Confidence 34577888899999999999999999999999999999999999999999999999999999995 99999999999 99
Q ss_pred eEEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecc
Q psy17091 604 IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG 683 (1250)
Q Consensus 604 ~ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg 683 (1250)
.||||+||+++|.|+||||||||||+|.|||||.+|+.||||++||++||+.++.+++ ..++||||||
T Consensus 89 ~iE~V~i~~~~~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~------------~~~~gvV~mg 156 (342)
T PRK14454 89 IIESVVMKYKHGNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIG------------ERISNIVLMG 156 (342)
T ss_pred EEEEEEEEEcCCCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhc------------CCCCCEEEEC
Confidence 9999999999999999999999999999999999999999999999999999998874 4688999999
Q ss_pred cCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhh-CCCeEEEEccCCChhhhhccCCCCCCCCHHH
Q psy17091 684 MGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPLKE 762 (1250)
Q Consensus 684 ~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~ 762 (1250)
|||||+|||||.+++++++++.|+++|+|||||||||++|+|.+++++ .++.||+||||+|++.|+++||++++||+++
T Consensus 157 gGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~ 236 (342)
T PRK14454 157 SGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEE 236 (342)
T ss_pred CchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHH
Confidence 999999999999999999999999999999999999999999999997 5788999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHHH
Q psy17091 763 LILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKIL 842 (1250)
Q Consensus 763 l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~iL 842 (1250)
+++++++|...+++ +|||||+||||+||+++||++|++|+++ ++++||||||||+++.+|++|+++.+++|+++|
T Consensus 237 l~~~~~~~~~~~~~-rv~iey~LI~gvNDs~eda~~La~llk~----l~~~VnLiPyn~~~~~~~~~ps~e~l~~f~~~l 311 (342)
T PRK14454 237 LIEACKYYINKTNR-RITFEYALVKGVNDSKEDAKELGKLLKG----MLCHVNLIPVNEVKENGFKKSSKEKIKKFKNIL 311 (342)
T ss_pred HHHHHHHHHHHhCC-EEEEEEEeECCCCCCHHHHHHHHHHHhc----CCceEEEEecCCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999999988764 9999999999999999999999999999 889999999999999999999999999999999
Q ss_pred HhCCCeEEEeccCccchHHhhhhcCCcc
Q psy17091 843 MNSGIFVTIRKIRGNDINAACGQLSGEE 870 (1250)
Q Consensus 843 ~~~G~~~~ir~~~g~~i~~acgql~~~~ 870 (1250)
+++|+.++||.++|.||+||||||+.++
T Consensus 312 ~~~gi~v~iR~~~G~di~aaCGQL~~~~ 339 (342)
T PRK14454 312 KKNGIETTIRREMGSDINAACGQLRRSY 339 (342)
T ss_pred HHCCCcEEEeCCCCCchhhcCcccchhh
Confidence 9999999999999999999999998654
No 10
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2e-88 Score=768.73 Aligned_cols=325 Identities=37% Similarity=0.663 Sum_probs=311.8
Q ss_pred chhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhh-cCccCCCeeeEEEEcCCCceEEEEEeC-CCe
Q psy17091 527 SIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKN-SVYIKAPHIMSDQISFDGTRKWIFHVK-KNI 604 (1250)
Q Consensus 527 ~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~-~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~~ 604 (1250)
+.+++++.+.|+|+|||+|||+|+|++++.+|++|||||+++|++|++ .|.+..+++++++.|.|||+||||+|+ |+.
T Consensus 10 ~~l~~~~~~~g~~~~r~~qi~~w~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~~l~dg~~ 89 (345)
T PRK14457 10 AELEDWAVAQGQPAFRGRQLHDWLYNKGVRSLDEISVLPKAWRESLKDDGVPIGRLTIVERSVAPDGTLKLLLSTEDGEI 89 (345)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHcCccCHHHHHHHhhcCccccCceEEEEEEcCCCcEEEEEEcCCCCE
Confidence 456788889999999999999999999999999999999999999999 699999999999999999999999999 999
Q ss_pred EEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeeccc
Q psy17091 605 IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM 684 (1250)
Q Consensus 605 ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~ 684 (1250)
||||+||+++|+|+||||||||||+|.||+||++|+.||||++||++||+.+.++++ ..++|||||||
T Consensus 90 iE~v~~~~~~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~------------~~~~~IvfmGm 157 (345)
T PRK14457 90 IETVGIPTEKRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQ------------RRVSHVVFMGM 157 (345)
T ss_pred EEEEEEEcCCCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhc------------CCCCEEEEEec
Confidence 999999999999999999999999999999999999999999999999999988763 45899999999
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhhC-------CCeEEEEccCCChhhhhccCCCCCC
Q psy17091 685 GEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC-------PVELAVSLHASNNNLRNKLVPISKK 757 (1250)
Q Consensus 685 GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~~-------~~~la~sl~~~~~~~r~~~~p~~~~ 757 (1250)
||||+||++|+++++.++++ +++|.|||||||+|++|.|++|+++. +++||+||||+|+++|++|||+|++
T Consensus 158 GEPlln~~~v~~~i~~l~~~--~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~ 235 (345)
T PRK14457 158 GEPLLNIDEVLAAIRCLNQD--LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKN 235 (345)
T ss_pred CccccCHHHHHHHHHHHhcc--cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccC
Confidence 99999999999999999987 78999999999999999999999864 7899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHH
Q psy17091 758 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKI 837 (1250)
Q Consensus 758 ~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~ 837 (1250)
||++++++++++|...++ ++|||||+||||+||+++||++|++|+++ ++++||||||||+++.+|++|+.+.+++
T Consensus 236 ~~l~~l~~~~~~y~~~~g-r~I~iey~LIpGvNDs~e~a~~La~~l~~----l~~~VnLIPynp~~~~~~~~ps~e~i~~ 310 (345)
T PRK14457 236 YPIENLLEDCRHYVAITG-RRVSFEYILLGGVNDLPEHAEELANLLRG----FQSHVNLIPYNPIDEVEFQRPSPKRIQA 310 (345)
T ss_pred CCHHHHHHHHHHHHHHhC-CEEEEEEEEECCcCCCHHHHHHHHHHHhc----CCCeEEEecCCCCCCCCCCCCCHHHHHH
Confidence 999999999999998875 49999999999999999999999999999 8899999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEeccCccchHHhhhhcCCcc
Q psy17091 838 FAKILMNSGIFVTIRKIRGNDINAACGQLSGEE 870 (1250)
Q Consensus 838 f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~ 870 (1250)
|+++|+++|+.++||.++|.||+||||||+.++
T Consensus 311 f~~~L~~~Gi~vtvR~~~G~di~aaCGqL~~~~ 343 (345)
T PRK14457 311 FQRVLEQRGVAVSVRASRGLDANAACGQLRRNA 343 (345)
T ss_pred HHHHHHHCCCeEEEeCCCCCchhhccccchhcc
Confidence 999999999999999999999999999998654
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=4.1e-87 Score=750.15 Aligned_cols=438 Identities=44% Similarity=0.705 Sum_probs=411.5
Q ss_pred CC-CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 1 MK-PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 1 m~-~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
|. |.|+|||+||||||||||||++++.++|+++||+|||+.++.++|.++.|.+|||+|++....+.+.+.+.+|++.+
T Consensus 1 m~~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 1 MSTPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 55 89999999999999999999999999999999999999999999999999999999999776678999999999999
Q ss_pred hhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-hhHHhcCCCCcEecccccCCchhHHHHHH
Q psy17091 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENI 158 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-~~~~~~~~~~~~~iSA~~g~gi~~L~~~i 158 (1250)
+.+||++|||+|++.++++.|..++++|++.++|+++|+||+|..+.+.. .+||.+|+++++++||.||.|+.+|++.+
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v 160 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAV 160 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHH
Confidence 99999999999999999999999999999888999999999998865555 89999999999999999999999999999
Q ss_pred HHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecC
Q psy17091 159 LTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238 (1250)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTp 238 (1250)
.+.++ ..+..+ +. ....++||+|+|+||||||||+|+|+|+++.++++.+|||+|++...+++++++|.++||+
T Consensus 161 ~~~l~-~~e~~~---~~--~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTA 234 (444)
T COG1160 161 LELLP-PDEEEE---EE--EETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTA 234 (444)
T ss_pred HhhcC-Cccccc---cc--ccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECC
Confidence 99986 322100 11 1125799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCc--cchHHHHH
Q psy17091 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH--NQRKIIKN 316 (1250)
Q Consensus 239 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~ 316 (1250)
|++++.++.+.+|+|++.+++.++..||++++|+|+++++++||.+++..+.+.|++++||+||||++++ ....+..+
T Consensus 235 GiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~ 314 (444)
T COG1160 235 GIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKK 314 (444)
T ss_pred CCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 56678888
Q ss_pred HHHHHhccCCCCeEEEeecCCCCChHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCcccccccceeeccccCCCC
Q psy17091 317 NIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKN 396 (1250)
Q Consensus 317 ~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 396 (1250)
+++..+++++++|++++||++|.|++++++++.+++..+..+++|+.||++++.++..+|||...|++++++|++|++++
T Consensus 315 ~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~~~~ 394 (444)
T COG1160 315 KLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQVSTN 394 (444)
T ss_pred HHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred CCceEEEeCcCCCccHHHHHHHHHHHHhhhccccccccchhhhhhhHh
Q psy17091 397 PPIIVIHGNRLKYIGNDYKRYLEKYFYRTFSLIDALEKNIVGEIYNRY 444 (1250)
Q Consensus 397 pp~fvif~n~~~~~~~~y~r~l~~~~r~t~~li~~~~~~~vg~Ii~~i 444 (1250)
||+|++|+|+++.++++|+|||+|++|++|+|.|+|++..+.+-.+++
T Consensus 395 PP~fvlf~N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~k~~~~~~ 442 (444)
T COG1160 395 PPTFVLFGNRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKKKKNPY 442 (444)
T ss_pred CCEEEEEecchhhCchHHHHHHHHHHHHHcCCCCCcEEEEEecCCCcc
Confidence 999999999999999999999999999999999999998776655543
No 12
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=100.00 E-value=7.1e-86 Score=754.75 Aligned_cols=331 Identities=46% Similarity=0.799 Sum_probs=316.5
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEEeC-CCe
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK-KNI 604 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~~ 604 (1250)
.+.+++++.++|+|+|||+|||+|||++++.+|++|||||+++|++|++.|.+..++++.++.|.|||+||||+|+ |+.
T Consensus 14 ~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~K~l~~~~dg~~ 93 (355)
T TIGR00048 14 LQELRQWLKDLGEKPFRAKQIYKWLYHKGKDSFDDMTNLSKDLREKLNRVFEIRTPEIAHEQRSVDGTIKYLFKLGDGQT 93 (355)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCHHHccccCHHHHHHHhhcEEeCCcceeEEEEcCCCeEEEEEEcCCCCE
Confidence 3467888999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeeccc
Q psy17091 605 IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM 684 (1250)
Q Consensus 605 ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~ 684 (1250)
||||+||+++|.|+||||||||+|+|.||+||++|+.||||++||++|++.+..+++. + +..++|||||||
T Consensus 94 iE~V~i~~~~~~t~cVSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~-------~--~~~v~nVvfmGm 164 (355)
T TIGR00048 94 IETVLIPEKDRATVCVSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNE-------T--GERVSNVVFMGM 164 (355)
T ss_pred EEEEEEEeCCCcEEEEecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhh-------c--CCCeeEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999888751 1 245999999999
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhh-CCCeEEEEccCCChhhhhccCCCCCCCCHHHH
Q psy17091 685 GEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPLKEL 763 (1250)
Q Consensus 685 GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l 763 (1250)
||||+||++|.++++.++++.|++||.+||||||||++|.|.+++++ ++++||+||||+|++.|++|||++++||++++
T Consensus 165 GEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~l 244 (355)
T TIGR00048 165 GEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVVPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETL 244 (355)
T ss_pred CchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCchHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHH
Confidence 99999999999999999999999999999999999999999999985 68999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy17091 764 ILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILM 843 (1250)
Q Consensus 764 ~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~iL~ 843 (1250)
++++++|.++++ ++|||||+||||+||+++||++|++|+++ ++++||||||||+++.+|++|+.+++++|+++|+
T Consensus 245 l~~l~~~~~~~g-~~VtieyvLI~GvNDs~e~a~~La~llk~----l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~ 319 (355)
T TIGR00048 245 LAAVRRYLNKTG-RRVTFEYVLLDGVNDQVEHAEELAELLKG----TKCKVNLIPWNPFPEADYERPSNEQIDRFAKTLM 319 (355)
T ss_pred HHHHHHHHHHhC-CEEEEEEEEECCCCCCHHHHHHHHHHHhc----CCCceEEEecccCCCCCCCCCCHHHHHHHHHHHH
Confidence 999999988776 59999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred hCCCeEEEeccCccchHHhhhhcCCcc
Q psy17091 844 NSGIFVTIRKIRGNDINAACGQLSGEE 870 (1250)
Q Consensus 844 ~~G~~~~ir~~~g~~i~~acgql~~~~ 870 (1250)
++|+.|+||.++|.||+||||||+.+.
T Consensus 320 ~~gi~v~iR~~~G~di~aaCGqL~~~~ 346 (355)
T TIGR00048 320 SYGFTVTIRKSRGDDIDAACGQLRAKD 346 (355)
T ss_pred HCCCeEEEeCCCCcchhhcCCcchhhh
Confidence 999999999999999999999998654
No 13
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=7.7e-86 Score=738.92 Aligned_cols=320 Identities=27% Similarity=0.545 Sum_probs=303.6
Q ss_pred chhhhhhhhcCChhHHHHHHH-HHHHhcCCCC--chhhcccCHHHHHHHhhc-CccCCCeeeEEEE-cCCCceEEEEEeC
Q psy17091 527 SIDKNIVHELGEMPFRAKQLQ-KWIHKFGVSD--FNKMTDLSMSLRKKLKNS-VYIKAPHIMSDQI-SFDGTRKWIFHVK 601 (1250)
Q Consensus 527 ~~~~n~~~~~g~~~~ra~qi~-~w~~~~~~~~--~~~~~~~~~~~r~~l~~~-~~~~~~~~~~~~~-~~d~t~k~l~~~~ 601 (1250)
+.+++++.+.|+|+|||+||| +|+|++++.+ |++|||||+++|++|++. |.+..+++...+. |.|||+||||+|+
T Consensus 4 ~el~~~~~~~g~~~~ra~Qi~~~w~~~~~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~~~s~dgt~K~l~~l~ 83 (344)
T PRK14464 4 QDLRQRLRALGAKPCHEGRILRAWLQGLPLDTRRQRAEDFLPLALREALPALEAELDGLARLRSEHPGEDGSARLLVELA 83 (344)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhCCCCccchhhhccCCHHHHHHHHhcCeeccCcceEEEEEecCCCcEEEEEEcC
Confidence 356788889999999999999 5999999999 699999999999999999 8999999888887 5799999999999
Q ss_pred -CCeEEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceee
Q psy17091 602 -KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIV 680 (1250)
Q Consensus 602 -~~~ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~iv 680 (1250)
|+.||||+||. .|+|||||+||+|+|.||+||++|+.|||+++||++|++.+.+. .+++|||
T Consensus 84 Dg~~iEtV~i~~---~t~CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~--------------~~i~nIV 146 (344)
T PRK14464 84 DGQMVESVLLPR---DGLCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRR--------------RAVKKVV 146 (344)
T ss_pred CCCEEEEEEecC---CcEEEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhc--------------CCCCEEE
Confidence 99999999994 69999999999999999999999999999999999999988752 3599999
Q ss_pred ecccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhh-CCCeEEEEccCCChhhhhccCCCCCCCC
Q psy17091 681 MMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYP 759 (1250)
Q Consensus 681 fmg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~~~~~~ 759 (1250)
||||||||+||++|+++++.++++ ++||.++|||||+|++|.+++|+++ .+++||+||||++++.|++|||+|++||
T Consensus 147 fmGmGEPl~N~d~vl~ai~~l~~~--~~i~~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~ 224 (344)
T PRK14464 147 FMGMGEPAHNLDNVLEAIDLLGTE--GGIGHKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIA 224 (344)
T ss_pred EeccCcccCCHHHHHHHHHHhhch--hcCCCceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCC
Confidence 999999999999999999999987 5889999999999999999999986 5889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHH
Q psy17091 760 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFA 839 (1250)
Q Consensus 760 ~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~ 839 (1250)
+++|++++++|.+.++ ++|||||+||+||||+++||++|++++++ ++|+||||||||+++..|.+|+.+++.+|+
T Consensus 225 l~el~~a~~~~~~~~g-rri~~EyvLl~GVNDs~e~a~~L~~~l~~----~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~ 299 (344)
T PRK14464 225 PEELVELGEAYARATG-YPIQYQWTLLEGVNDSDEEMDGIVRLLKG----KYAVMNLIPYNSVDGDAYRRPSGERIVAMA 299 (344)
T ss_pred HHHHHHHHHHHHHHHC-CEEEEEEEEeCCCCCCHHHHHHHHHHHhc----cccccceecCCccCCCCccCCCHHHHHHHH
Confidence 9999999999998875 59999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHhCCCeEEEeccCccchHHhhhhcCCcc
Q psy17091 840 KILMNSGIFVTIRKIRGNDINAACGQLSGEE 870 (1250)
Q Consensus 840 ~iL~~~G~~~~ir~~~g~~i~~acgql~~~~ 870 (1250)
+.|+++|+.++||.++|.||+||||||+.+.
T Consensus 300 ~~L~~~gi~~tiR~~~G~di~aACGqL~~~~ 330 (344)
T PRK14464 300 RYLHRRGVLTKVRNSAGQDVDGGCGQLRARA 330 (344)
T ss_pred HHHHHCCceEEEECCCCCchhhcCcchhhhh
Confidence 9999999999999999999999999998754
No 14
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.4e-84 Score=734.78 Aligned_cols=323 Identities=28% Similarity=0.433 Sum_probs=307.0
Q ss_pred chhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEEeC-CCeE
Q psy17091 527 SIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK-KNII 605 (1250)
Q Consensus 527 ~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~~v 605 (1250)
+.+++++.+.|+|+|||+|||+|+|++++. |++|||||+++|++|++.|.+..+++++++.|.|||+||||+|+ |+.|
T Consensus 7 ~~~~~~~~~~g~~~~r~~qi~~~~~~~~~~-~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~d~t~k~l~~l~dg~~i 85 (336)
T PRK14470 7 QDSRALARPAGISLEDARRITGAVIGRGAP-LRSARNVRRSVLDEVDALATPGELRLVERVDAKDGFRKYLFELPDGLRV 85 (336)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHhCCCC-HHHhccCCHHHHHHHhcccccCCceEEEEEEcCCCcEEEEEEcCCCCEE
Confidence 456788889999999999999999999999 99999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecc-CCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeeccc
Q psy17091 606 ETVFIPE-KNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM 684 (1250)
Q Consensus 606 e~v~~~~-~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~ 684 (1250)
|||+||+ .+|+|+|||||+||+|+|.||+||++|+.|||+++||++|++.+.+... .+++|||||||
T Consensus 86 E~V~ip~~~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~------------~~i~nIvfmGm 153 (336)
T PRK14470 86 EAVRIPLFDTHHVVCLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSE------------RPITGVVFMGQ 153 (336)
T ss_pred EEEeccccCCCCEEEEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcC------------CCCCEEEEEec
Confidence 9999995 6899999999999999999999999999999999999999998765432 46999999999
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhhC-CCeEEEEccCCChhhhhccCCCCCCCCHHHH
Q psy17091 685 GEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC-PVELAVSLHASNNNLRNKLVPISKKYPLKEL 763 (1250)
Q Consensus 685 GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~~-~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l 763 (1250)
||||+||++|.++++.++++.||++|+++|||||||++|.|++++++. ++.||+||||+|++.|++|||+|+++|++++
T Consensus 154 GEPllN~d~v~~~i~~l~~~~~~~~~~~~ItVsTnG~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~i 233 (336)
T PRK14470 154 GEPFLNYDEVLRAAYALCDPAGARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDEL 233 (336)
T ss_pred CccccCHHHHHHHHHHHhCccccccCCCceEEEecCChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHH
Confidence 999999999999999999999999999999999999999999999874 6899999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHHH-
Q psy17091 764 ILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKIL- 842 (1250)
Q Consensus 764 ~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~iL- 842 (1250)
++++++|.+. + +++|+||+||+|+||+++||++|++|+++ ++++||||||||+++ +|++|+.+++++|+++|
T Consensus 234 l~ai~~~~~~-~-rri~ieyvLI~GvNDseeda~~La~llk~----l~~~vnlI~~N~~~~-~~~~p~~~~i~~f~~~l~ 306 (336)
T PRK14470 234 VEAIREHAAL-R-GRVTLEYVMISGVNVGEEDAAALGRLLAG----IPVRLNPIAVNDATG-RYRPPDEDEWNAFRDALA 306 (336)
T ss_pred HHHHHHHHHh-C-CCeEEEEEEEecccCCHHHHHHHHHHHhc----CCCeEEEeccCCCCC-CccCCCHHHHHHHHHHHH
Confidence 9999999876 4 58999999999999999999999999999 899999999999766 99999999999999999
Q ss_pred -HhCCCeEEEeccCccchHHhhhhcCCc
Q psy17091 843 -MNSGIFVTIRKIRGNDINAACGQLSGE 869 (1250)
Q Consensus 843 -~~~G~~~~ir~~~g~~i~~acgql~~~ 869 (1250)
+++|+.+++|.++|.||+||||||+.+
T Consensus 307 ~~~~g~~~~~R~~~G~di~aaCGqL~~~ 334 (336)
T PRK14470 307 RELPGTPVVRRYSGGQDEHAACGMLASR 334 (336)
T ss_pred HccCCeEEEEECCCCCChHhccCccccc
Confidence 489999999999999999999999763
No 15
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=100.00 E-value=1.4e-84 Score=737.87 Aligned_cols=325 Identities=36% Similarity=0.564 Sum_probs=306.0
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcC--ccCCCeeeEEEEcCCCceEEEEEeC-C
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV--YIKAPHIMSDQISFDGTRKWIFHVK-K 602 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~--~~~~~~~~~~~~~~d~t~k~l~~~~-~ 602 (1250)
.+.+++++.+.|.|+|||+|||+|+|++++.+|++|||||+++|++|++.| .+..+++...+.| |||+||||+|+ |
T Consensus 7 ~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~~~s-dgt~K~l~~l~dg 85 (347)
T PRK14453 7 YGKMKQILSNLKLPDYRYEQITKAIFKQRIDNFEDMHILPKALRESLINEFGKNVLSVIPVFEQDS-KQVTKVLFELTDG 85 (347)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhcCCCCHHHhccCCHHHHHHHHHHHhhccCCceeEEEEec-CCeEEEEEEcCCC
Confidence 346778888999999999999999999999999999999999999999999 6888999999998 89999999999 9
Q ss_pred CeEEEEEeccCCC-ceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeee
Q psy17091 603 NIIETVFIPEKNR-NTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVM 681 (1250)
Q Consensus 603 ~~ve~v~~~~~~~-~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivf 681 (1250)
+.||||+||+++| +|+||||||||+|+|.||+||++|+.||||++||++|++.+... +.+++||||
T Consensus 86 ~~iE~V~i~~~~~~~t~CvssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~-------------~~~i~~Ivf 152 (347)
T PRK14453 86 ERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLN-------------GHRLDSISF 152 (347)
T ss_pred CEEEEEEEeecCCceeEEEecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhc-------------CCCcceEEE
Confidence 9999999999986 99999999999999999999999999999999999999966431 246999999
Q ss_pred cccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhhC-CCeEEEEccCCChhhhhccCCCCCCCCH
Q psy17091 682 MGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC-PVELAVSLHASNNNLRNKLVPISKKYPL 760 (1250)
Q Consensus 682 mg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~~-~~~la~sl~~~~~~~r~~~~p~~~~~~~ 760 (1250)
|||||||+|+ +|++++++++++.|+++|.|||||||||++|.++++++.. .+.||+||||+|++.|+++||++++|++
T Consensus 153 mGmGEPLln~-~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L 231 (347)
T PRK14453 153 MGMGEALANP-ELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPL 231 (347)
T ss_pred eecCCccCCH-HHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccH
Confidence 9999999995 6999999999999999999999999999999999999975 7899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCcc-----ceeEeeeccCCCCCC--CCCCCcHH
Q psy17091 761 KELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT-----SCKINLIPFNCFPNS--NLICSKNS 833 (1250)
Q Consensus 761 ~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~-----~~~vnlip~n~~~~~--~~~~p~~e 833 (1250)
+++++++++|...++ ++|||||+||||+||+++||++|++|+++ + .++||||||||+++. +|++|+.+
T Consensus 232 ~~ll~~~~~~l~~~~-~~V~iry~LI~GvNDs~e~a~~L~~~lk~----l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e 306 (347)
T PRK14453 232 NEVMKTLDEHIRHTG-RKVYIAYIMLEGVNDSKEHAEAVVGLLRN----RGSWEHLYHVNLIPYNSTDKTPFKFQSSSAG 306 (347)
T ss_pred HHHHHHHHHHHHhcC-CcEEEEEEeECCCCCCHHHHHHHHHHHhh----ccccCCcceEEEecCCCCCCCCccCCCCCHH
Confidence 999999999998776 59999999999999999999999999998 5 689999999999876 49999999
Q ss_pred HHHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCcc
Q psy17091 834 RIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEE 870 (1250)
Q Consensus 834 ~i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~ 870 (1250)
++.+|+++|+++|+.++||.++|.||+||||||+...
T Consensus 307 ~v~~f~~~L~~~Gi~vtiR~~~G~di~aaCGqL~~~~ 343 (347)
T PRK14453 307 QIKQFCSTLKSAGISVTVRTQFGSDISAACGQLYGNY 343 (347)
T ss_pred HHHHHHHHHHHCCCcEEEeCCCCCchhhccccchhhh
Confidence 9999999999999999999999999999999998754
No 16
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.2e-84 Score=740.98 Aligned_cols=334 Identities=41% Similarity=0.680 Sum_probs=316.2
Q ss_pred cchhhhhhh-hcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEEeC-CC
Q psy17091 526 ESIDKNIVH-ELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK-KN 603 (1250)
Q Consensus 526 ~~~~~n~~~-~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~ 603 (1250)
.+.+++++. +.|+|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..++++..+.|.|||+||||+|+ |+
T Consensus 9 ~~~l~~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~K~l~~~~dg~ 88 (354)
T PRK14460 9 YPELEAFITAELGEPRFRARQIWQWLWQKGARDFDSMTNVSKALRARLAEKAVINWPEVETVQTSSDGTVKFLLRLADGA 88 (354)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHhcceecCCcceeEEEEcCCCcEEEEEEcCCCC
Confidence 345677887 9999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eEEEEEeccCC-CceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCC-cceeee
Q psy17091 604 IIETVFIPEKN-RNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQ-ITNIVM 681 (1250)
Q Consensus 604 ~ve~v~~~~~~-~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~ivf 681 (1250)
.||||+||+.+ |+|+|||||+||||+|.||+||++|+.||||++||++||+.++.++. .+++|.+ ++||||
T Consensus 89 ~iE~V~~p~~~~r~t~CvSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~-------~~g~g~~~i~nIvf 161 (354)
T PRK14460 89 LVETVLIPSKSRRYTQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLG-------DNGPDHPILRNLVF 161 (354)
T ss_pred EEEEEEeEcCCCceeEEeeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHh-------hccCCCcceeEEEE
Confidence 99999999998 99999999999999999999999999999999999999999988875 1344555 999999
Q ss_pred cccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHH
Q psy17091 682 MGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLK 761 (1250)
Q Consensus 682 mg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~ 761 (1250)
|||||||+|+++|+++++.++++.|+++|.|||||||||++|.+++|++.--+.|++||||+|++.|++|||.+++|+++
T Consensus 162 mGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~ 241 (354)
T PRK14460 162 MGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLD 241 (354)
T ss_pred ecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHH
Confidence 99999999999999999999999999999999999999999999999876448899999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHH
Q psy17091 762 ELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKI 841 (1250)
Q Consensus 762 ~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~i 841 (1250)
++++++++|...++ ++|||||+||||+||+++||++|++|+++ ++++||||||||+.+.+|++|+.+.+++|+++
T Consensus 242 ~ll~al~~~~~~~~-~~v~iey~LI~GvNDs~ed~~~l~~~l~~----~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~ 316 (354)
T PRK14460 242 DLIAALKSYPLKTR-ERVTFEYLLLGGVNDSLEHARELVRLLSR----TKCKLNLIVYNPAEGLPYSAPTEERILAFEKY 316 (354)
T ss_pred HHHHHHHHHHHhcC-CeEEEEEEEECCCCCCHHHHHHHHHHHhc----CCCcEEEEcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 99999999987765 49999999999999999999999999999 88999999999999999999999999999999
Q ss_pred HHhCCCeEEEeccCccchHHhhhhcCCccc
Q psy17091 842 LMNSGIFVTIRKIRGNDINAACGQLSGEET 871 (1250)
Q Consensus 842 L~~~G~~~~ir~~~g~~i~~acgql~~~~~ 871 (1250)
|+++|+.++||.++|.||+||||||+.+..
T Consensus 317 l~~~Gi~vtir~~~G~di~aaCGqL~~~~~ 346 (354)
T PRK14460 317 LWSKGITAIIRKSKGQDIKAACGQLKAEEL 346 (354)
T ss_pred HHHCCCeEEEeCCCCCchHhccccchhhhh
Confidence 999999999999999999999999987653
No 17
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=7.2e-84 Score=738.49 Aligned_cols=331 Identities=39% Similarity=0.675 Sum_probs=316.0
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEEeC-CCe
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK-KNI 604 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~~ 604 (1250)
.+.+++++.+.|+|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..++++..+.|.|||+||||+++ |..
T Consensus 18 ~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~K~l~~~~dg~~ 97 (356)
T PRK14455 18 LDELQEWLVEQGEKKFRATQIWDWLYRKRVQSFEEMTNLSKDLREKLNDNFVVTTLKTRVKQESKDGTIKFLFELPDGYL 97 (356)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhcccCHHHHHHHhcccccCCccEEEEEEcCCCcEEEEEEcCCCCE
Confidence 3467888999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeeccc
Q psy17091 605 IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM 684 (1250)
Q Consensus 605 ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~ 684 (1250)
||||+||+++|.|+||||||||||+|.||+||.+|+.||||++||++||+.++.++.. + |..++|||||||
T Consensus 98 ie~V~~~~~~~~t~ciSsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~-------~--g~~v~~Vv~~Gm 168 (356)
T PRK14455 98 IETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDE-------T--EERVSHIVVMGI 168 (356)
T ss_pred EEEEEEEecCCceEEEECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhh-------c--CCCcceEEEecc
Confidence 9999999999999999999999999999999999999999999999999999888751 1 235899999999
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhh-CCCeEEEEccCCChhhhhccCCCCCCCCHHHH
Q psy17091 685 GEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPLKEL 763 (1250)
Q Consensus 685 GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l 763 (1250)
||||+||++|.++++.++++.|+++|.+||||||||++|.+.++++. ++++||+||||+|+++|++|||+|++||+++|
T Consensus 169 GEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~I 248 (356)
T PRK14455 169 GEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKL 248 (356)
T ss_pred ccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHH
Confidence 99999999999999999998999999999999999999999999987 58999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHHHH
Q psy17091 764 ILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILM 843 (1250)
Q Consensus 764 ~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~iL~ 843 (1250)
++++++|.+.++ ++|||||+||||+||+++|+++|++|+++ ++++||||||||+++.+|++|+.+.+.+|+++|.
T Consensus 249 l~~l~~~~~~~~-~~v~iey~lI~gvNDs~ed~~~La~ll~~----l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~ 323 (356)
T PRK14455 249 MEAIEYYIEKTN-RRVTFEYILLGGVNDQVEHAEELADLLKG----IKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLK 323 (356)
T ss_pred HHHHHHHHHhcC-CeEEEEEEEeCCCCCCHHHHHHHHHHHhc----CCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHH
Confidence 999999987654 59999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred hCCCeEEEeccCccchHHhhhhcCCcc
Q psy17091 844 NSGIFVTIRKIRGNDINAACGQLSGEE 870 (1250)
Q Consensus 844 ~~G~~~~ir~~~g~~i~~acgql~~~~ 870 (1250)
++|+.++||.++|.||+||||||+.+.
T Consensus 324 ~~gi~v~ir~~~g~di~aaCGqL~~~~ 350 (356)
T PRK14455 324 KNGVNCTIRREHGTDIDAACGQLRAKE 350 (356)
T ss_pred HCCCcEEEeCCCCcchhhcCccchhhh
Confidence 999999999999999999999998765
No 18
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=8.6e-83 Score=727.68 Aligned_cols=332 Identities=39% Similarity=0.631 Sum_probs=312.9
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEc-----CCCceEEEEEe
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQIS-----FDGTRKWIFHV 600 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~-----~d~t~k~l~~~ 600 (1250)
...+++++.+.|+|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..++++.++.| .|||+||||+|
T Consensus 25 ~~el~~~~~~~g~~~~r~~qi~~w~y~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~d~~~~dgt~K~l~~l 104 (368)
T PRK14456 25 RQELTELLARLGEPAWRAAQLHQWLFSHRALSFEEMTTLSKPLRRKLAESFAIQPPVTEKHDETMEGSPAGPTEKLLIKL 104 (368)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHhcceecCCcceEEEEeeccCCCCCCeEEEEEEc
Confidence 3467788999999999999999999999999999999999999999999999999999999999 57799999999
Q ss_pred C-CCeEEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCccee
Q psy17091 601 K-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNI 679 (1250)
Q Consensus 601 ~-~~~ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~i 679 (1250)
+ |..||||+||+.+|+|+|||||+||+|+|.||+||.+|+.||||++||++|++.+.+.+... ..+..++||
T Consensus 105 ~dg~~iEtV~i~~~~~~t~ciSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~-------~~~~~v~nI 177 (368)
T PRK14456 105 PDGELVETVLIPGPERMTACISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAER-------NRERGITNI 177 (368)
T ss_pred CCCCEEEEEEEecCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhh-------hccCCccEE
Confidence 9 99999999999999999999999999999999999999999999999999999887665310 112468999
Q ss_pred eecccCccCCCHHHHHHHHHHhhcC-CCCCCCCceEEEEecCchhHHHHhhhh-CCCeEEEEccCCChhhhhccCCCCC-
Q psy17091 680 VMMGMGEPLLNYKSTIGALKLILSD-HAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISK- 756 (1250)
Q Consensus 680 vfmg~GEpl~n~~~v~~~~~~~~~~-~~~~~~~~~itvsT~g~~~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~~~- 756 (1250)
|||||||||+|+++|.++++.+++. .++++|.++|||||+|++|.|++|++. ++++|||||||+|++.|++|||+++
T Consensus 178 vfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~ 257 (368)
T PRK14456 178 VFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAAR 257 (368)
T ss_pred EEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCCChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCC
Confidence 9999999999999999999999985 899999999999999999999999997 5789999999999999999999995
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHH
Q psy17091 757 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 836 (1250)
Q Consensus 757 ~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~ 836 (1250)
+||+++|++++++|...++ ++|||||+||+|+||+++||++|++|+++ ++++||||||||+++.+|++|+.+.++
T Consensus 258 ~~~l~~l~~~i~~~~~~~g-~~V~ieyvLI~GvNDs~eda~~L~~~l~~----~~~~VnlIpyn~~~~~~~~~ps~e~i~ 332 (368)
T PRK14456 258 DYPLDELREALIGYASKTG-EPVTLVYMLLEGINDSPEDARKLIRFASR----FFCKINLIDYNSIVNIKFEPVCSSTRE 332 (368)
T ss_pred CCCHHHHHHHHHHHHHhcC-CeEEEEEEEEcCCCCCHHHHHHHHHHHhc----CCCeeEEeeeccCCCCCCCCCCHHHHH
Confidence 9999999999999998876 59999999999999999999999999999 889999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCc
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGE 869 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~ 869 (1250)
+|+++|+++|+.|+||.++|.||+||||||+.+
T Consensus 333 ~F~~~L~~~Gi~vtvR~~~G~di~aACGQL~~~ 365 (368)
T PRK14456 333 RFRDRLLDAGLQVTVRKSYGTTINAACGQLAAR 365 (368)
T ss_pred HHHHHHHHCCCcEEeeCCCCcchhhcCCcchhc
Confidence 999999999999999999999999999999764
No 19
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.1e-82 Score=723.22 Aligned_cols=326 Identities=39% Similarity=0.680 Sum_probs=312.7
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEEeC-CCe
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK-KNI 604 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~~ 604 (1250)
.+.+++++.+.|+|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..++++..+.|.|||+||||+|+ |+.
T Consensus 12 ~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l~~~~dg~~ 91 (349)
T PRK14463 12 LQELEAFLAGQGKERFRAKQIFKWLYQRDARSFAEMTNLSKDLRAELEETARISNLEPEAVEVSRDGTRKYLFRLEDGNA 91 (349)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHhCCCCHHHhcccCHHHHHhhcCCeeecCcceeEEEEcCCCcEEEEEEcCCCCe
Confidence 4567888999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeeccc
Q psy17091 605 IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM 684 (1250)
Q Consensus 605 ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~ 684 (1250)
||||+||+++|+|+|||||+||+|+|.||+||.+++.||||++||++|+..+... ..++|||||||
T Consensus 92 iE~V~~~~~~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~--------------~~i~~IvfmG~ 157 (349)
T PRK14463 92 VESVLIPDEDRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRD--------------VPVRNIVFMGM 157 (349)
T ss_pred EEEEEEEecCCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhc--------------CCccEEEEecC
Confidence 9999999999999999999999999999999999999999999999999877642 24899999999
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHH
Q psy17091 685 GEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELI 764 (1250)
Q Consensus 685 GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~ 764 (1250)
||||+|+++|+++++.++++.|+++|.+||||||+|++|.|.++++..+++||+||||+|++.|++|||+|++|++++|+
T Consensus 158 GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~ 237 (349)
T PRK14463 158 GEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELL 237 (349)
T ss_pred CcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHH
Confidence 99999999999999999998999999999999999999999999988789999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHHHHh
Q psy17091 765 LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMN 844 (1250)
Q Consensus 765 ~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~iL~~ 844 (1250)
+++++|...++ ++|||||+||+|+||+++||++|++|+++ ++++||||||||+++.+|++|+.+.+++|+++|++
T Consensus 238 ~a~~~~~~~~~-~~v~ieyvLI~GvNDs~e~~~~L~~ll~~----l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~~ 312 (349)
T PRK14463 238 AACKAFPLPGR-RKITIEYVMIRGLNDSLEDAKRLVRLLSD----IPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLLD 312 (349)
T ss_pred HHHHHHHHhcC-CeEEEEEEEeCCCCCCHHHHHHHHHHHhc----cCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999988765 59999999999999999999999999999 88999999999999999999999999999999999
Q ss_pred CCCeEEEeccCccchHHhhhhcCCcc
Q psy17091 845 SGIFVTIRKIRGNDINAACGQLSGEE 870 (1250)
Q Consensus 845 ~G~~~~ir~~~g~~i~~acgql~~~~ 870 (1250)
+|+.++||.++|.||+||||||+.+.
T Consensus 313 ~gi~v~vR~~~G~di~aaCGqL~~~~ 338 (349)
T PRK14463 313 KHVTVITRSSRGSDISAACGQLKGKL 338 (349)
T ss_pred CCceEEEeCCCCcchhhccCcccccc
Confidence 99999999999999999999998765
No 20
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.4e-82 Score=720.14 Aligned_cols=320 Identities=38% Similarity=0.626 Sum_probs=304.8
Q ss_pred CChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcCCCceEEEEEeC-CCeEEEEEeccCCC
Q psy17091 537 GEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNR 615 (1250)
Q Consensus 537 g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~~ve~v~~~~~~~ 615 (1250)
|+|+|||+|||+|+|++++.+|++|||||+++|++|+++|.+..+++++.+.|.|||+||||+++ |+.||||+||+.+|
T Consensus 13 ~~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l~~~~dg~~iE~V~i~~~~~ 92 (343)
T PRK14468 13 PGEGYRRAQLAEWLYAQGARTFDAMTNLPKALRAELAREYRLSPFREVETFRSQDGSVKYLFTLLDGKQTEAVYMPYLDR 92 (343)
T ss_pred CCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhhccccCCceEEEEEEcCCCcEEEEEECCCCCEEEEEEEEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCccCCCHHHHH
Q psy17091 616 NTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 695 (1250)
Q Consensus 616 ~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GEpl~n~~~v~ 695 (1250)
+|+|||||+||+|+|.||+||++|+.||||++||++|++.+....+ . ...+++|||||||||||+|+++|+
T Consensus 93 ~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g-~--------~~~~i~~Vvf~GmGEPlln~~~v~ 163 (343)
T PRK14468 93 KTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEG-I--------SPREIRNVVLMGMGEPLLNYENVL 163 (343)
T ss_pred CEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcC-c--------CcCCccEEEEeccCccccCHHHHH
Confidence 9999999999999999999999999999999999999998765432 0 024699999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhh-CCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHHHHhhC
Q psy17091 696 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS 774 (1250)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~ 774 (1250)
++++.++++.|++++.++||+||||++|.++++++. ++++||+||||+|++.|++|||++++++++++++++++|.+.+
T Consensus 164 ~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~ 243 (343)
T PRK14468 164 KAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVT 243 (343)
T ss_pred HHHHHhcccccccccCceEEEECCCChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999976 5889999999999999999999999999999999999998876
Q ss_pred CCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEecc
Q psy17091 775 PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKI 854 (1250)
Q Consensus 775 ~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~iL~~~G~~~~ir~~ 854 (1250)
+ ++|||||+||+|+||+++||++|++|+++ +.++||||||||+++..|++|+.+++++|+++|+++|+.++||.+
T Consensus 244 ~-~~V~ieyvLI~GvNDs~e~~~~L~~ll~~----~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~ 318 (343)
T PRK14468 244 G-RRVTLEYTMLKGVNDHLWQAELLADLLRG----LVSHVNLIPFNPWEGSPFQSSPRAQILAFADVLERRGVPVSVRWS 318 (343)
T ss_pred C-CeEEEEEEEeCCCcCCHHHHHHHHHHHhc----CCcEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 5 49999999999999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred CccchHHhhhhcCCcc
Q psy17091 855 RGNDINAACGQLSGEE 870 (1250)
Q Consensus 855 ~g~~i~~acgql~~~~ 870 (1250)
+|.||+||||||+.+.
T Consensus 319 ~g~di~aaCGqL~~~~ 334 (343)
T PRK14468 319 RGRDVGAACGQLALKR 334 (343)
T ss_pred CCcchhhcCCccccCC
Confidence 9999999999998654
No 21
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1e-79 Score=707.06 Aligned_cols=327 Identities=40% Similarity=0.645 Sum_probs=311.3
Q ss_pred cchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeeeEEEEcC-CCceEEEEEeC-CC
Q psy17091 526 ESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISF-DGTRKWIFHVK-KN 603 (1250)
Q Consensus 526 ~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~-d~t~k~l~~~~-~~ 603 (1250)
.+.+++++.+.|.|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..+++++.+.|. |||+||||+|. |.
T Consensus 9 ~~~~~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~s~~d~t~k~l~~~~dg~ 88 (343)
T PRK14469 9 YEELVSEITELGLEKYRADQILDWIYKKKVFNFDEMTNLSKDHRALLSEHFSIPFPKLLDKQVSKIDGTTKFLWELEDGN 88 (343)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhhccccCCceEEEEEeccCCCeEEEEEEcCCCC
Confidence 34567888899999999999999999999999999999999999999999999999999999995 99999999999 99
Q ss_pred eEEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecc
Q psy17091 604 IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG 683 (1250)
Q Consensus 604 ~ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg 683 (1250)
.||||+||+++|.|+|||||+||+|+|.||+||.+|+.||||++||++|++.+..... ..++||||||
T Consensus 89 ~ie~v~~~~~~~~t~cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~------------~~v~~Vvf~G 156 (343)
T PRK14469 89 TIESVMLFHPDRITACISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEK------------KKVGNVVYMG 156 (343)
T ss_pred EEEEEEEecCCCeEEEEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhcc------------CCcCeEEEEc
Confidence 9999999999999999999999999999999999999999999999999998876543 4689999999
Q ss_pred cCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhh-CCCeEEEEccCCChhhhhccCCCCCCCCHHH
Q psy17091 684 MGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPLKE 762 (1250)
Q Consensus 684 ~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~ 762 (1250)
|||||+||++|.++++.++++.|+++|.++|||||+|++|.+++|++. ++++||+||||++++.|+++||+|+++++++
T Consensus 157 mGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~ 236 (343)
T PRK14469 157 MGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEE 236 (343)
T ss_pred cChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999987 5889999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHHHHHHHHHHH
Q psy17091 763 LILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKIL 842 (1250)
Q Consensus 763 l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e~i~~f~~iL 842 (1250)
|++++++|...++ +++|+||+||+|+||+++|+++|++++++ ++++||||||||+.+ ++++|+.+.+.+|+++|
T Consensus 237 Il~~l~~~~~~~~-~~v~i~yvlI~g~NDs~ed~~~La~llk~----~~~~VnLIpynp~~~-~~~~ps~e~l~~f~~~l 310 (343)
T PRK14469 237 IINAVKIYQKKTG-NRVTIEYILIKGFNDEIEDAKKLAELLKG----LKVFVNLIPVNPTVP-GLEKPSRERIERFKEIL 310 (343)
T ss_pred HHHHHHHHHHHhC-CeEEEEEEEECCCCCCHHHHHHHHHHHhc----cCcEEEEEecCCCCc-cCCCCCHHHHHHHHHHH
Confidence 9999999987765 49999999999999999999999999999 889999999999876 79999999999999999
Q ss_pred HhCCCeEEEeccCccchHHhhhhcCCcc
Q psy17091 843 MNSGIFVTIRKIRGNDINAACGQLSGEE 870 (1250)
Q Consensus 843 ~~~G~~~~ir~~~g~~i~~acgql~~~~ 870 (1250)
+++|+.+++|.++|.||+||||||+.+.
T Consensus 311 ~~~gi~vtvr~~~g~di~aaCGqL~~~~ 338 (343)
T PRK14469 311 LKNGIEAEIRREKGSDIEAACGQLRRRN 338 (343)
T ss_pred HHCCCeEEEeCCCCcchhhcCccchhhh
Confidence 9999999999999999999999998764
No 22
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-69 Score=619.70 Aligned_cols=394 Identities=43% Similarity=0.668 Sum_probs=365.1
Q ss_pred HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCC
Q psy17091 835 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGP 914 (1250)
Q Consensus 835 i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P 914 (1250)
.+.++++++++|+. .|++|.++..+.+- .-.+...+...++||.|.|+ +|+.++||||+|+|+||++++|....+.|
T Consensus 25 ~~~~~~v~~~yGf~-eI~TPifE~telf~-r~~Ge~td~v~kemY~F~Dk-ggr~laLRpe~Tapv~R~~~en~~~~~~p 101 (429)
T COG0124 25 ESTIRKVFESYGFS-EIRTPIFEYTELFA-RKSGEETDVVEKEMYTFKDK-GGRSLALRPELTAPVARAVAENKLDLPKP 101 (429)
T ss_pred HHHHHHHHHHcCCE-eccCccccchhHhh-hccCCcccccccceEEEEeC-CCCEEEecccCcHHHHHHHHhccccccCC
Confidence 35688889999999 89999999999985 22355556678999999999 99999999999999999999998877889
Q ss_pred eeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHH-----H
Q psy17091 915 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKY-----C 989 (1250)
Q Consensus 915 ~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~-----~ 989 (1250)
+|+||+|+|||+|+||.||+|||+|+|+|+||.+++.+|||+|+++.++|+++|+.+++|+|||+++++.++++ .
T Consensus 102 ~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~~~~l~iN~~g~l~~~~~~~gi~~~ 181 (429)
T COG0124 102 LKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIGGFTLEINSRGILEGRLEYLGIDQR 181 (429)
T ss_pred eeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcCCCcEEEEEcCcccHHHHHHhhcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred HHHHHHHHhcc----CchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceEE
Q psy17091 990 IDLINYIKKHK----DSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYK 1065 (1250)
Q Consensus 990 ~~~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~ 1065 (1250)
..+.+++++.. .. +++.++.++..++++.++++.....+++..++.+++.+..++.++++++.++|+.+|+++.
T Consensus 182 ~~l~~~ldk~~k~~~~~--L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~i~~~~~~e~~~~~~~v~~~L~~~g~~~~ 259 (429)
T COG0124 182 EALLRYLDKLDKIGKLE--LDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELLDYLDEESLEHLEELLALLDALGISYE 259 (429)
T ss_pred HHHHHHHhhhhhHHHHH--hhhhhhhhhhhchHHHHHhccchHHHHHhccHHhhhhccHHHHHHHHHHHHHHHHcCCCEE
Confidence 88999998876 33 6778888888899999998888888889999999999988999999999999999999999
Q ss_pred EeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccCCCCCCCCceEE
Q psy17091 1066 INTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIY 1145 (1250)
Q Consensus 1066 ~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~~~~~~~~~~v~ 1145 (1250)
+||+++||+|||||+|||++.+..+...+||+|||||+|++.||+++.||||||+|+|||+.+|.+.+...+...+++|+
T Consensus 260 id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pavGFaiGveRl~~~l~~~~~~~~~~~~~~v~ 339 (429)
T COG0124 260 IDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAVGFAIGVERLILALEEEGKEDPVETRVDVY 339 (429)
T ss_pred EccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCCceeEehHHHHHHHHHHHcCCCCCcCCCCCEE
Confidence 99999999999999999999998887889999999999999999999999999999999999999987533446789999
Q ss_pred EEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCC
Q psy17091 1146 IVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPT 1225 (1250)
Q Consensus 1146 V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~ 1225 (1250)
|+++++....+++.++++||++|++|++++. .+++++|+++|++.|++|+||+|++|+++|+|+||||.++
T Consensus 340 v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~----~r~~k~q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~----- 410 (429)
T COG0124 340 VVPLGEDAEPEALKLAQKLRAAGISVEVDYS----GRKLKKQFKYADKLGARFAVILGEDELANGVVTVKDLATG----- 410 (429)
T ss_pred EEEcCchhHHHHHHHHHHHHHcCCcEEEEec----cccHHHHHHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCC-----
Confidence 9999998888999999999999999999988 6779999999999999999999999999999999999999
Q ss_pred CcceeeehHHHHHHHHHH
Q psy17091 1226 LKQISISFKDAENYFYKK 1243 (1250)
Q Consensus 1226 ~~e~~v~~~el~~~l~~~ 1243 (1250)
+|..++++++++.++..
T Consensus 411 -eq~~v~~~~~~~~~~~~ 427 (429)
T COG0124 411 -EQEEVPLDELVEELKEL 427 (429)
T ss_pred -ccceecHHHHHHHHHhh
Confidence 99999999999998764
No 23
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=8.4e-66 Score=621.03 Aligned_cols=427 Identities=33% Similarity=0.570 Sum_probs=377.8
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+|+|||+||||||||+|+|++.+.+++++.||+|++.....+.+++..+.+|||||+.... ..+.+.+..++..++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA-KGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc-hhHHHHHHHHHHHHHH
Confidence 489999999999999999999998888899999999999999999999999999999987432 3466678888889999
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-hhHHhcCCCCcEecccccCCchhHHHHHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~ 160 (1250)
++|++|||+|++++.+..+..+.++++..++|+++|+||+|+...... .+++.++++.++++||++|.|+++|++++.+
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~ 196 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLA 196 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHh
Confidence 999999999999988888888999999999999999999998654333 5667788888899999999999999999998
Q ss_pred hhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCC
Q psy17091 161 IELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240 (1250)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 240 (1250)
.+++.... .. .....++|+++|.||||||||+|+|++.++..+++.+|||+|.....+.+++.++.+|||||+
T Consensus 197 ~l~~~~~~----~~---~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~ 269 (472)
T PRK03003 197 ALPEVPRV----GS---ASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGL 269 (472)
T ss_pred hccccccc----cc---ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCc
Confidence 87653210 00 012368999999999999999999999988888999999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHH
Q psy17091 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK 320 (1250)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~ 320 (1250)
++..+.....+.+...++..+++.||++++|+|++++.+.++..++..+.+.++|+|+|+||||+.+........+++.+
T Consensus 270 ~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~ 349 (472)
T PRK03003 270 RRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDR 349 (472)
T ss_pred cccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHH
Confidence 77655545567787777778899999999999999999999999999999999999999999999864444445556666
Q ss_pred HhccCCCCeEEEeecCCCCChHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCcccccccceeeccccCCCCCCce
Q psy17091 321 KLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPII 400 (1250)
Q Consensus 321 ~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~pp~f 400 (1250)
.+....++|++++||++|.|++++|+.+.+.++.+..+++|+.||+++.+++..++||..+++++|++|++|++++||+|
T Consensus 350 ~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~~~k~~y~~q~~~~pp~f 429 (472)
T PRK03003 350 ELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPPVRGGKQPRILFATQASTRPPTF 429 (472)
T ss_pred hcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCCCCeeeeEEEEECCCCCCCEE
Confidence 66666778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCccHHHHHHHHHHHHhhhccccccccchhh
Q psy17091 401 VIHGNRLKYIGNDYKRYLEKYFYRTFSLIDALEKNIVG 438 (1250)
Q Consensus 401 vif~n~~~~~~~~y~r~l~~~~r~t~~li~~~~~~~vg 438 (1250)
++|++ +.++++|+|||+|+||+.|+|.|+|++..+.
T Consensus 430 ~~~~~--~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~ 465 (472)
T PRK03003 430 VLFTT--GFLEAGYRRFLERRLRETFGFEGSPIRISVR 465 (472)
T ss_pred EEEeC--CCCChHHHHHHHHHHHHHcCCCcceEEEEEE
Confidence 99966 6799999999999999999999999987553
No 24
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=1.7e-65 Score=617.85 Aligned_cols=425 Identities=47% Similarity=0.765 Sum_probs=388.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|++||+||||||||+|+|++++.+++++.||+|+++....+.+++..+.+|||||+.... +.+.+.+..++..+++++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD-DGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc-hhHHHHHHHHHHHHHhhC
Confidence 5899999999999999999999988899999999999999999999999999999986433 557788889999999999
Q ss_pred CEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-hhHHhcCCCCcEecccccCCchhHHHHHHHHhh
Q psy17091 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
|+++||+|++.+.+..+..+.+++++.++|+++|+||+|+.+.... .+++.+|+.+++++||++|.|++++++.+.+.+
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998765544 778889998999999999999999999999888
Q ss_pred CCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCC
Q psy17091 163 LPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242 (1250)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~ 242 (1250)
+..... .......++|+++|.||||||||+|+|++.++..+++.+|||++.....+.+++..+.+|||||+.+
T Consensus 160 ~~~~~~-------~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~ 232 (429)
T TIGR03594 160 PEEEEE-------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRR 232 (429)
T ss_pred Cccccc-------ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccc
Confidence 653221 0112346899999999999999999999999888999999999999999999999999999999998
Q ss_pred CCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccC-CccchHHHHHHHHHH
Q psy17091 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSI-IHNQRKIIKNNIKKK 321 (1250)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~-~~~~~~~~~~~l~~~ 321 (1250)
..+..+.+|.++..+++.+++.||++++|+|++++.+.++..++..+.+.++|+++|+||||+. +.....+..+.+...
T Consensus 233 ~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~ 312 (429)
T TIGR03594 233 KGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRK 312 (429)
T ss_pred cccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHh
Confidence 8877778899998899999999999999999999999999999999999999999999999998 444456677778888
Q ss_pred hccCCCCeEEEeecCCCCChHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCcccccccceeeccccCCCCCCceE
Q psy17091 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIV 401 (1250)
Q Consensus 322 l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~pp~fv 401 (1250)
+....++|++++||++|.|++++++++.+.+..+..+++|+.+|+++.+++..++||..+++++|++|++|++++||+|+
T Consensus 313 ~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~ 392 (429)
T TIGR03594 313 LPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEAVAAHPPPLVNGRRLKIKYATQVGTNPPTFV 392 (429)
T ss_pred cccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCCCCCCCceeeEEEEECCCCCCCEEE
Confidence 88778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCccHHHHHHHHHHHHhhhccccccccch
Q psy17091 402 IHGNRLKYIGNDYKRYLEKYFYRTFSLIDALEKNI 436 (1250)
Q Consensus 402 if~n~~~~~~~~y~r~l~~~~r~t~~li~~~~~~~ 436 (1250)
+|+|+++.++++|+|||+|++|+.|+|.|+|++..
T Consensus 393 ~~~n~~~~~~~~y~~~l~~~~~~~~~~~g~p~~~~ 427 (429)
T TIGR03594 393 LFGNRPELLPFSYKRYLENQFREAFGFEGTPIRLE 427 (429)
T ss_pred EEEcCcccCCHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 99999999999999999999999999999998754
No 25
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=3.4e-64 Score=606.83 Aligned_cols=428 Identities=46% Similarity=0.733 Sum_probs=388.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+|+++|++|||||||+|+|++.+.+++++.|++|+++....+.+++..+.+|||||+.... +.+...+..++..++.
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD-DGFEKQIREQAELAIE 79 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc-hhHHHHHHHHHHHHHH
Confidence 489999999999999999999999888899999999999999999999999999999997632 3366678888889999
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-hhHHhcCCCCcEecccccCCchhHHHHHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~ 160 (1250)
++|++|||+|++++.+..+..+.+++++.++|+++|+||+|+.+.... .+++.+++..++++||++|.|++++++.+..
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 999999999999988888888999999999999999999997653333 6778888888999999999999999999987
Q ss_pred hhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCC
Q psy17091 161 IELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240 (1250)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 240 (1250)
....... .. .....++|+++|+||||||||+|+|++.++..+++.+|||++.....+.+++..+.+|||||+
T Consensus 160 ~~~~~~~------~~--~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~ 231 (435)
T PRK00093 160 ELPEEEE------ED--EEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGI 231 (435)
T ss_pred hCCcccc------cc--ccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCC
Confidence 4432211 00 113479999999999999999999999999999999999999998889899999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHH
Q psy17091 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK 320 (1250)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~ 320 (1250)
.+..+..+.+|.++..+++.+++.+|++++|+|++++.+.++..++..+.+.++|+++|+||||+.+.....+..+++..
T Consensus 232 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~ 311 (435)
T PRK00093 232 RRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRR 311 (435)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 98887778889999889999999999999999999999999999999999999999999999999866556677778888
Q ss_pred HhccCCCCeEEEeecCCCCChHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCcccccccceeeccccCCCCCCce
Q psy17091 321 KLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPII 400 (1250)
Q Consensus 321 ~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~pp~f 400 (1250)
.+....+.|++++||++|.|++++++.+.+.+..+..+++|+.+|+++.+++..++||..++++++++|++|++++||+|
T Consensus 312 ~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~~~~q~~~~pp~f 391 (435)
T PRK00093 312 RLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEAVERHPPPLVKGRRLKIKYATQVGTNPPTF 391 (435)
T ss_pred hcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHHcCCCCCCCCeeeeEEEEEcCCCCCCEE
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCccHHHHHHHHHHHHhhhccccccccchhh
Q psy17091 401 VIHGNRLKYIGNDYKRYLEKYFYRTFSLIDALEKNIVG 438 (1250)
Q Consensus 401 vif~n~~~~~~~~y~r~l~~~~r~t~~li~~~~~~~vg 438 (1250)
++|+|+++.++++|+|||+|+||+.|+|.|+|++..+.
T Consensus 392 ~~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~p~~~~~~ 429 (435)
T PRK00093 392 VLFVNDPELLPFSYKRYLENQLREAFDFEGTPIRLEFR 429 (435)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCcccEEEEEe
Confidence 99999999999999999999999999999999987654
No 26
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=1.2e-62 Score=619.50 Aligned_cols=429 Identities=32% Similarity=0.545 Sum_probs=380.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.++|+++|+||||||||+|+|++.+.+++++.||+|+++.....++++..+.+|||||+.... +.+...+..++..++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV-EGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC-ccHHHHHHHHHHHHHH
Confidence 478999999999999999999999888899999999999999999999999999999987432 3466778889999999
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-hhHHhcCCCCcEecccccCCchhHHHHHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~ 160 (1250)
.+|++|||+|++++++..+..+.++++..++|+++|+||+|+...... .+++.+++..++++||++|.|+++|++.+.+
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~ 433 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALD 433 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHH
Confidence 999999999999988898889999999999999999999998654333 6777888888999999999999999999998
Q ss_pred hhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCC
Q psy17091 161 IELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240 (1250)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 240 (1250)
.+++.... .........++|+++|+||||||||+|+|++.++..+++.+|||+|.....+.+++.++.+|||||+
T Consensus 434 ~l~~~~~~-----~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~ 508 (712)
T PRK09518 434 SLKVAEKT-----SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGI 508 (712)
T ss_pred hccccccc-----ccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCc
Confidence 88653210 0000012358999999999999999999999988888999999999999889999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHH
Q psy17091 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK 320 (1250)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~ 320 (1250)
.+..+.....+.+...++..+++.+|++++|+|++++.+.++..++..+.+.++|+++|+||||+.+....+...+.+..
T Consensus 509 ~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~ 588 (712)
T PRK09518 509 KRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKT 588 (712)
T ss_pred ccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHH
Confidence 87665555567787778888899999999999999999999999999998899999999999999865444555566666
Q ss_pred HhccCCCCeEEEeecCCCCChHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCcccccccceeeccccCCCCCCce
Q psy17091 321 KLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPII 400 (1250)
Q Consensus 321 ~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~pp~f 400 (1250)
.+....+.+++++||++|.|++++++.+.+.+..+..+++|+.+|++++.++..++||..+++++|++|++|+.++||+|
T Consensus 589 ~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f 668 (712)
T PRK09518 589 EFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHPLRGGKQPRILFATQASTRPPRF 668 (712)
T ss_pred hccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCCccCCeeeeEEEEECCCCCCCEE
Confidence 66667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCccHHHHHHHHHHHHhhhccccccccchhh
Q psy17091 401 VIHGNRLKYIGNDYKRYLEKYFYRTFSLIDALEKNIVG 438 (1250)
Q Consensus 401 vif~n~~~~~~~~y~r~l~~~~r~t~~li~~~~~~~vg 438 (1250)
++|+| +.++++|+|||+|+||+.|+|.|+|++..+.
T Consensus 669 ~~f~~--~~~~~~y~r~l~~~~r~~~~~~g~pi~~~~~ 704 (712)
T PRK09518 669 VIFTT--GFLEHGYRRFLERSLREEFGFEGSPIQISVN 704 (712)
T ss_pred EEEcC--CCCChHHHHHHHHHHHHHcCCccceEEEEEE
Confidence 99977 6899999999999999999999999986543
No 27
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-59 Score=557.55 Aligned_cols=407 Identities=39% Similarity=0.612 Sum_probs=336.8
Q ss_pred CCCCCCCCCCcHHH----HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCC
Q psy17091 821 CFPNSNLICSKNSR----IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEG 896 (1250)
Q Consensus 821 ~~~~~~~~~p~~e~----i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~ 896 (1250)
|-+..++-++.... .+.++++++++||. .|.+|..+..+.++.. .+.+++...++||+|+|+ +|+.++||||+
T Consensus 7 p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~-~I~TP~~E~~e~~~~~-~G~~~~~~~~~my~~~d~-~g~~l~LRpd~ 83 (430)
T CHL00201 7 IRGTKDILPDEINYWQFIHDKALTLLSLANYS-EIRTPIFENSSLYDRG-IGETTDIVNKEMYRFTDR-SNRDITLRPEG 83 (430)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCe-eecCcccchHHHHhcc-cCCcccccccceEEEEcC-CCCEEEeCCCC
Confidence 33444555444333 34577778899999 8999999999998833 345666667899999998 89999999999
Q ss_pred cHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEE
Q psy17091 897 TASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLE 975 (1250)
Q Consensus 897 T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~ 975 (1250)
|+|+||+++++..+. ..|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|+++++|+
T Consensus 84 T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~lGl~~~~i~ 163 (430)
T CHL00201 84 TAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQVKNLILD 163 (430)
T ss_pred cHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHcCCCceEEE
Confidence 999999998876543 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHH
Q psy17091 976 LNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQK 1055 (1250)
Q Consensus 976 i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~ 1055 (1250)
|||+++++....+...+..++...... ++......+...+++.++.+.....+.+..++.+.+.+..+++++|..+.+
T Consensus 164 l~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~~~~~~l~~~~~ 241 (430)
T CHL00201 164 INSIGKLEDRQSYQLKLVEYLSQYQDD--LDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLESTEHFYDVCT 241 (430)
T ss_pred ECCCCchhhHHHHHHHHHHHHHHHHhh--cCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhHHHHHHHHHHHH
Confidence 999999886544444444555433211 233333444334444444443333445566666666667788899999999
Q ss_pred HHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccCC
Q psy17091 1056 ILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININ 1135 (1250)
Q Consensus 1056 ~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~~ 1135 (1250)
.++..|+.+.+||+++||++||||++||++.+..+...+||+|||||+|++.||+.+.||||||+++|||+.+|.+...
T Consensus 242 ~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~PavGfa~g~erl~~~l~~~~~- 320 (430)
T CHL00201 242 YLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAVGCAIGLERLLLIAKDNII- 320 (430)
T ss_pred HHHHcCCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCCeeEEEecHHHHHHHHhcccc-
Confidence 9999999999999999999999999999998765555789999999999999998889999999999999998875322
Q ss_pred CCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEE
Q psy17091 1136 HNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIK 1215 (1250)
Q Consensus 1136 ~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk 1215 (1250)
.+..+.+|+|++.+++...+|++++++||++|++|+++.. ..++++++++|++.|+++++|+|++|+++++|+||
T Consensus 321 -~~~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~----~~~l~k~~k~A~~~~~~~viiiG~~E~~~~~vtvk 395 (430)
T CHL00201 321 -LPKQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLS----SSNFHKQIKQAGKKRAKACIILGDNEIMDNCITIK 395 (430)
T ss_pred -CCCCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeC----CCCHHHHHHHHHHcCCCEEEEEechHHhCCcEEEE
Confidence 2335678999999988889999999999999999999876 57899999999999999999999999999999999
Q ss_pred EcCCCCCCCCCcceeeehHHHHHHHHHHH
Q psy17091 1216 DLRNKYEDPTLKQISISFKDAENYFYKKI 1244 (1250)
Q Consensus 1216 ~~~~~~~~~~~~e~~v~~~el~~~l~~~i 1244 (1250)
++.++ +|..++++++++.+.+.-
T Consensus 396 ~l~~~------~q~~i~~~~~~~~~~~~~ 418 (430)
T CHL00201 396 WLDEQ------VQENAQYSNFKQEISYLK 418 (430)
T ss_pred ECCCC------CcEEEcHHHHHHHHHHHH
Confidence 99999 999999999998887655
No 28
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=1.2e-58 Score=557.77 Aligned_cols=405 Identities=21% Similarity=0.309 Sum_probs=316.8
Q ss_pred ccCCCCCCCCCCCcHHH----HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccC
Q psy17091 818 PFNCFPNSNLICSKNSR----IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLR 893 (1250)
Q Consensus 818 p~n~~~~~~~~~p~~e~----i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LR 893 (1250)
|-.|-+..+|-++.... ...+++++++||+. .|.+|.+++.+.+.+.. + + ..++||+|+|+ +|+.++||
T Consensus 327 ~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~-eI~TPvfE~~Ell~~k~-G---e-d~k~mY~f~D~-gGr~LaLR 399 (763)
T PLN02972 327 PKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGAT-ALDTPVFELRETLMGKY-G---E-DSKLIYDLADQ-GGELCSLR 399 (763)
T ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCE-EccCCcccchHHhhccc-C---c-chhheEEEECC-CCCEEEeC
Confidence 33455555565544332 34578888999999 89999999999876422 1 1 13689999999 99999999
Q ss_pred CCCcHHHHHHHHHcCCCCCCCeeEEEEeceeecCCCCCCCCCceEEeeEEEecC-CCchhchHHHHHHHHHHHHCCCCce
Q psy17091 894 PEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF-PGPDIDAELIIMCSRLWKNLNLKNI 972 (1250)
Q Consensus 894 pD~T~~iaR~~a~~~~~~~~P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~-~~~~adaEvi~l~~~~l~~lgl~~~ 972 (1250)
||+|+|+||+++++.. .|+|+||+|+|||+++|+.||+|||+|||+||||. ++..+|+|+|.++.++|+.+|+++|
T Consensus 400 PDlTvPiAR~vA~n~~---~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~LGi~df 476 (763)
T PLN02972 400 YDLTVPFARYVAMNGI---TSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELDIGTY 476 (763)
T ss_pred CCChHHHHHHHHhCCC---CcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhCCCCce
Confidence 9999999999999754 58999999999999999999999999999999997 5556899999999999999999999
Q ss_pred EEEeCCCcChhhHHHHH-------HHHHHHHHhccCchhhhHHHHHHhhh-cccc--------ccccccHHHHHHHhhhh
Q psy17091 973 CLELNSIGNFNERKKYC-------IDLINYIKKHKDSKWFCEDIKHSLYL-NSLR--------VLDSKNLIIREILINAP 1036 (1250)
Q Consensus 973 ~i~i~~~~i~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~--------~l~~~~~~~~~~~~~~~ 1036 (1250)
.|+|||+++++.+++.+ ..+.+.+++.... ..+.....+.. ..+. .+........+++....
T Consensus 477 ~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~--~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd~L~ 554 (763)
T PLN02972 477 EVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQ--SFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLSKLR 554 (763)
T ss_pred EEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhh--hHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999877543 2344444443221 11222111110 0000 00000000011111111
Q ss_pred hH-----HHHHHHhHHHHHHHHHHHHhhCCc--eEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcC
Q psy17091 1037 KL-----LDYLEKDSLDHFYGIQKILNYNNI--SYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFS 1109 (1250)
Q Consensus 1037 ~~-----~~~l~~~~~~~l~~l~~~l~~~gi--~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg 1109 (1250)
.. .+....+++++|..+.+.|+.+|+ .+.|||+++||++||||+|||+|..+.+ .++||+|||||+|++.||
T Consensus 555 ~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g~~-~gsIagGGRYD~Lv~~Fg 633 (763)
T PLN02972 555 QEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKGAQ-VGSIAAGGRYDNLVGMFS 633 (763)
T ss_pred HhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcCCc-cceeeecCCchhHHHhcC
Confidence 10 011224678999999999999987 5999999999999999999999987533 258999999999999998
Q ss_pred CCCCCeEEEEEeHHHHHHHHHHccCCC---CCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHH
Q psy17091 1110 NKFVPASGFAIGIERLIELIKKININH---NFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKS 1186 (1250)
Q Consensus 1110 ~~~~pavGfsi~lerl~~~l~~~~~~~---~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~ 1186 (1250)
+++.||||||+++|||+.++.+.+..+ ....+++|+|++.+++.+.++++++++||++||+|++.+ .+++++
T Consensus 634 G~~vPAVGFSiGIERL~~~L~~~~~~~~~~~~~~~~dVlV~s~g~~~l~~alkia~~LR~aGI~aE~~~-----~~kl~k 708 (763)
T PLN02972 634 GKQVPAVGVSLGIERVFAIMEQQEEEKSQVIRPTETEVLVSIIGDDKLALAAELVSELWNAGIKAEYKV-----STRKAK 708 (763)
T ss_pred CCCCCEEEEEecHHHHHHHHHHcccCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeC-----CCCHHH
Confidence 888999999999999999998765432 234557999999998888999999999999999999754 368999
Q ss_pred HHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHh
Q psy17091 1187 QMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIK 1246 (1250)
Q Consensus 1187 ~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~ 1246 (1250)
++++|++.||+|+||+|++|+++|+|+|||+.++ +|..|+++++++++++++.+
T Consensus 709 q~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tg------eq~~V~~delv~~l~~~l~~ 762 (763)
T PLN02972 709 HLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAG------VEEEVDRTCFVQELKAELLK 762 (763)
T ss_pred HHHHHHHCCCCEEEEECchHHhCCeEEEEECCCC------cceEeeHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999 99999999999999887753
No 29
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=1.4e-56 Score=539.31 Aligned_cols=380 Identities=23% Similarity=0.354 Sum_probs=308.3
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCCe
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPK 915 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P~ 915 (1250)
+.++++++.+||. .|.+|..++.+.+... ..+...++||+|.|+ +|+.++||||+|+|+||+++++....+.|+
T Consensus 92 ~~~~~~~~~~Gy~-~I~tP~lE~~el~~~~----~g~~~~~~~y~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~P~ 165 (487)
T PLN02530 92 DHFREVSRLFGFE-EVDAPVLESEELYIRK----AGEEITDQLYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLSLPL 165 (487)
T ss_pred HHHHHHHHHcCCE-eccccccchHHHhccc----cCcccccceEEEECC-CCCEEecCCCCcHHHHHHHHhcccccCCCe
Confidence 4588888999999 8999999999987522 223356789999999 999999999999999999999876667899
Q ss_pred eEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCC--ceEEEeCCCcChhhHHHHH----
Q psy17091 916 RLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLK--NICLELNSIGNFNERKKYC---- 989 (1250)
Q Consensus 916 r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~--~~~i~i~~~~i~~~~~~~~---- 989 (1250)
|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|++ ++.|+|||+++++.+++.+
T Consensus 166 r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~lgl~~~~~~i~i~~~~i~~~~l~~~~~~~ 245 (487)
T PLN02530 166 KWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRVGITSSDVGIKVSSRKVLQAVLKSYGIPE 245 (487)
T ss_pred EEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHcCCCCCceEEEEcCHHHHHHHHHHcCCch
Confidence 9999999999999999999999999999999999999999999999999999996 7999999999998877543
Q ss_pred ---HHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHH--hhhhhHHHHH--HHhHHHHHHHHHHHHhhCCc
Q psy17091 990 ---IDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREIL--INAPKLLDYL--EKDSLDHFYGIQKILNYNNI 1062 (1250)
Q Consensus 990 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~l--~~~~~~~l~~l~~~l~~~gi 1062 (1250)
..+...+++.... ..+.+...+....+. ......+..++ ...+.+.+.+ ..+++++|+.+.+.++.+|+
T Consensus 246 ~~~~~v~~~~d~l~k~--~~~~l~~~L~~~~~~--~~~~~~l~~l~~~~~~~~l~~~~~~~~~~l~~L~~l~~~l~~~g~ 321 (487)
T PLN02530 246 ESFAPVCVIVDKLEKL--PREEIEKELDTLGVS--EEAIEGILDVLSLKSLDDLEALLGADSEAVADLKQLFSLAEAYGY 321 (487)
T ss_pred hhHHHHHHHHHhhhhc--cHHHHHHHHHHcCCC--HHHHHHHHHHHhccCHHHHHHHhhhhHHHHHHHHHHHHHHHHcCC
Confidence 2222233332111 111111111100000 00000010111 0111111111 13588999999999999997
Q ss_pred e--EEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccCCCCCCC
Q psy17091 1063 S--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSH 1140 (1250)
Q Consensus 1063 ~--i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~~~~~~~ 1140 (1250)
. +.+||+++||++||||+|||+|... +...+||+|||||+|++.||+++.||||||+++++|+.++.+.+.+|.|.+
T Consensus 322 ~~~i~~Dl~lvrgldYYTGivFe~~~~~-~~~~~I~gGGRYD~Li~~fgg~~~pAvGFa~g~~~l~~~l~~~g~~p~~~~ 400 (487)
T PLN02530 322 QDWLVFDASVVRGLAYYTGIVFEGFDRA-GKLRAICGGGRYDRLLSTFGGEDTPACGFGFGDAVIVELLKEKGLLPELPH 400 (487)
T ss_pred CccEEEecccccCccccCceEEEEEecC-CCcceeeecccHHHHHHHhCCCCCCeeEEEEhHHHHHHHHHhcCCCCCCCC
Confidence 5 9999999999999999999999843 445689999999999999998889999999999999999888777777888
Q ss_pred CceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCC
Q psy17091 1141 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNK 1220 (1250)
Q Consensus 1141 ~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~ 1220 (1250)
+++|+|++++++...+|++++++||++|++|+++.. ..++++++++|++.|++|+++||++|.++++|+|||+.++
T Consensus 401 ~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~----~~~l~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sg 476 (487)
T PLN02530 401 QVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLE----PKKLKWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSG 476 (487)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCC
Confidence 899999999988889999999999999999999876 5789999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeehHHH
Q psy17091 1221 YEDPTLKQISISFKDA 1236 (1250)
Q Consensus 1221 ~~~~~~~e~~v~~~el 1236 (1250)
+|..|+++++
T Consensus 477 ------eq~~v~~~el 486 (487)
T PLN02530 477 ------EQTEVKLDEL 486 (487)
T ss_pred ------cceEechHHc
Confidence 8999998764
No 30
>KOG1936|consensus
Probab=100.00 E-value=4e-55 Score=474.44 Aligned_cols=390 Identities=22% Similarity=0.357 Sum_probs=316.8
Q ss_pred HHHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCC
Q psy17091 834 RIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDG 913 (1250)
Q Consensus 834 ~i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~ 913 (1250)
..+.+.++++.||.. +|-+|.++--+...| ++.+. .+.+|.|.|+ +|+.++||||+|+|+||++|+|+. .
T Consensus 80 if~~i~~vFkrhGa~-~iDTPVFElkeiL~g----KYGEd-skLiYdlkDQ-GGEl~SLRYDLTVPfARylAmNki---~ 149 (518)
T KOG1936|consen 80 IFSTIKEVFKRHGAE-TIDTPVFELKEILTG----KYGED-SKLIYDLKDQ-GGELCSLRYDLTVPFARYLAMNKI---T 149 (518)
T ss_pred HHHHHHHHHHHcCCe-eccccchhHHHHHhh----hcccc-cceeEehhhc-CCcEEEeecccccHHHHHHHHccc---c
Confidence 345689999999998 899999998887654 44332 3789999999 999999999999999999999865 6
Q ss_pred CeeEEEEeceeecCCC--CCCCCCceEEeeEEEec-CCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHH-
Q psy17091 914 PKRLWYSGPMFRHERP--QYGRYRQFYQIGVEAIG-FPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYC- 989 (1250)
Q Consensus 914 P~r~yy~g~VfR~e~~--~~gr~REf~Q~g~eiig-~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~- 989 (1250)
.+|+|+|+.|||.++| -.||+|||+||||||.| .+...+|+|+++++.++|+.||+.+|.|.+||+.++++.++.|
T Consensus 150 sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l~Igd~~iKvNhRkiLdgmf~v~G 229 (518)
T KOG1936|consen 150 SIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRLGIGDYGIKVNHRKILDGMFAVCG 229 (518)
T ss_pred cceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhcCccceEEEecHHHHHHHHHHHhC
Confidence 8899999999999988 67999999999999999 5677889999999999999999999999999999999987554
Q ss_pred ------HHHHHHHHhccCchhhhHHHHHHhhh-ccccc--ccc--------ccHHHHHHHhhhhhHH-HHHHHhHHHHHH
Q psy17091 990 ------IDLINYIKKHKDSKWFCEDIKHSLYL-NSLRV--LDS--------KNLIIREILINAPKLL-DYLEKDSLDHFY 1051 (1250)
Q Consensus 990 ------~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~--l~~--------~~~~~~~~~~~~~~~~-~~l~~~~~~~l~ 1051 (1250)
..+...+++.... -+++.+.++.. ..+.. .+. ...++.+.+...+.+. +....++++++.
T Consensus 230 Vp~~~frtICSsIDKLdK~--pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~~l~~n~~a~eal~dlk 307 (518)
T KOG1936|consen 230 VPEDKFRTICSSIDKLDKM--PWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIADPKLSQNEAAKEALADLK 307 (518)
T ss_pred CCHHHhhhHHHhhhhhhcC--CHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcCCcccccHHHHHHHHHHH
Confidence 4455556655544 33555555432 11110 000 0011111121122222 223347889999
Q ss_pred HHHHHHhhCCce--EEEeCCCCCCCCCCcceEEEEEECCC-----------------CCCcceeecccchHHHHhcCCC-
Q psy17091 1052 GIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKL-----------------GSQNSICGGGRYDFLIKKFSNK- 1111 (1250)
Q Consensus 1052 ~l~~~l~~~gi~--i~~D~~~~~~~~YYtG~vFe~~~~~~-----------------~~~~~i~~GGRYD~L~~~fg~~- 1111 (1250)
.++++++.+|+. |+||+|++||++||||+|||++..+. ..-+++|+|||||+|+..|+.+
T Consensus 308 ~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGSvaaGGRYDnLv~mf~~k~ 387 (518)
T KOG1936|consen 308 QLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGSVAAGGRYDNLVGMFDKKG 387 (518)
T ss_pred HHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhccccccCCCccccccCcchhhHHHHhcccc
Confidence 999999999984 99999999999999999999988531 1126899999999999999865
Q ss_pred -CCCeEEEEEeHHHHHHHHHHccC---CCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHH
Q psy17091 1112 -FVPASGFAIGIERLIELIKKINI---NHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQ 1187 (1250)
Q Consensus 1112 -~~pavGfsi~lerl~~~l~~~~~---~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~ 1187 (1250)
.+|+||+++|++||+..|.+... ..-....++|+|...+...+.+++++++.||.+||.+++.+. ...++-+|
T Consensus 388 ~~vPcvG~S~GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~~Lw~agI~aE~~yk---~~~~~~~q 464 (518)
T KOG1936|consen 388 DKVPCVGQSVGVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVNALWDAGIKAEYLYK---ANPKLLKQ 464 (518)
T ss_pred CcCCccceeehHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHHHHHHHHhcCcchhhhhh---cCccHHHH
Confidence 68999999999999999976321 112345678999999999999999999999999999998776 35789999
Q ss_pred HHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHH
Q psy17091 1188 MKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 1244 (1250)
Q Consensus 1188 ~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i 1244 (1250)
+.+|++.||||+||+|++|+++|.|+||++.++ ++..+++++++..|++..
T Consensus 465 ~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~r------e~~~v~~e~~v~~l~~~l 515 (518)
T KOG1936|consen 465 FQYAEEAGIPLAVILGEEELADGSVKVKNVGTR------EEVLVKREQFVSELKDLL 515 (518)
T ss_pred HHHHHhcCCCeEEEechhhhcCCeEEEEecccc------cceeccHHHHHHHHHHHh
Confidence 999999999999999999999999999999998 999999999999998765
No 31
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=1.1e-53 Score=507.88 Aligned_cols=376 Identities=45% Similarity=0.739 Sum_probs=315.7
Q ss_pred HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCC
Q psy17091 835 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGP 914 (1250)
Q Consensus 835 i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P 914 (1250)
.+.+.++++++|+. .|.+|..+..+.+... .+...+...++||+|.|+ +|+.++||||+|+|+||+++++....+.|
T Consensus 21 ~~~i~~~f~~~Gy~-~i~~P~le~~~~~~~~-~g~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~p 97 (397)
T TIGR00442 21 EETIREVFELYGFK-EIRTPIFEYTELFARK-VGEETDIVEKEMYTFKDK-GGRSLTLRPEGTAPVARAVIENKLLLPKP 97 (397)
T ss_pred HHHHHHHHHHcCCe-EecCcccchHHHhhhc-cCccccccccceEEEECC-CCCEEeecCCCcHHHHHHHHhcccccCCC
Confidence 35677888999999 7999999999887521 122223345789999999 99999999999999999999876555789
Q ss_pred eeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHH
Q psy17091 915 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLIN 994 (1250)
Q Consensus 915 ~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~ 994 (1250)
+|+||+|+|||+++++.||+|||+|+|+|+||.++..+|+|+|.++.++|+.+|++++.|+|||+++++++++....+.+
T Consensus 98 ~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~~~~i~i~~~~i~~~~~~~~~~l~~ 177 (397)
T TIGR00442 98 FKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIKDFTLEINSLGILEGRLEYREALLR 177 (397)
T ss_pred eEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887778887
Q ss_pred HHHhc-cCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCC
Q psy17091 995 YIKKH-KDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRG 1073 (1250)
Q Consensus 995 ~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~ 1073 (1250)
.+++. .. +.......+....+.+.......+..++...+.+...+...++++|+++.+.++..|+.++|||+++|+
T Consensus 178 ~l~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~~dl~~~r~ 254 (397)
T TIGR00442 178 YLDKHLDK---LGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRAHFEELKELLDALGIPYKIDPSLVRG 254 (397)
T ss_pred HHHHhHhh---cCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEECCccccC
Confidence 77762 21 111111112111122222222233444455555555566778999999999999999999999999999
Q ss_pred CCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccCCCCCCCCceEEEEEcChHH
Q psy17091 1074 MDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEA 1153 (1250)
Q Consensus 1074 ~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~~~~~~~~~~v~V~~~~~~~ 1153 (1250)
++||||++||+|.++.+...+||+|||||+|++.||+...|||||++++|||+.++.+.+..+++.++++|+|++.+++.
T Consensus 255 ~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avGfs~~~~~l~~~l~~~~~~~~~~~~~~vlV~~~~~~~ 334 (397)
T TIGR00442 255 LDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTPAVGFAIGIERLLLLLEELGLEPPEESSPDVYVVPLGEEA 334 (397)
T ss_pred chhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCceEEeeecHHHHHHHHHhcCCCCCCCCCCcEEEEEeCHHH
Confidence 99999999999998655446899999999999999887899999999999999999887777766778999999999888
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCC
Q psy17091 1154 ELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNK 1220 (1250)
Q Consensus 1154 ~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~ 1220 (1250)
..++++++++||++|++|++++. ..++++++++|++.|++|+++||++|.++++|+|||+.++
T Consensus 335 ~~~~~~i~~~Lr~~gi~v~~~~~----~~~l~k~~~~a~~~g~~~~i~ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 335 ELEALKLAQKLRKAGIRVEVDLG----GRKLKKQLKYADKLGARFAVILGEDELANGTVTLKDLETG 397 (397)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCC----CCCHHHHHHHHHHcCCCEEEEEChhHHhCCeEEEEeCCCC
Confidence 88999999999999999999876 5789999999999999999999999999999999999874
No 32
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.1e-53 Score=505.19 Aligned_cols=386 Identities=44% Similarity=0.717 Sum_probs=318.2
Q ss_pred HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCC
Q psy17091 835 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGP 914 (1250)
Q Consensus 835 i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P 914 (1250)
.+.+++++.++|+. .|.+|..+..+.+-. ..+.......++||+|.|+ +|+.++||||+|+|+||+++++.. .|
T Consensus 25 ~~~i~~~~~~~Gy~-ei~tP~le~~~~~~~-~~g~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~~ar~~~~~~~---~p 98 (412)
T PRK00037 25 EDTIREVFERYGFS-EIRTPIFEYTELFKR-KVGEETDIVEKEMYTFQDK-GGRSLTLRPEGTAPVVRAVIEHKL---QP 98 (412)
T ss_pred HHHHHHHHHHcCCe-EeeccccchHHHhcc-ccCcccccccceeEEEEcC-CCCEEEecCCCcHHHHHHHHhCCC---CC
Confidence 45678888999999 899999999988741 1111112346789999999 999999999999999999998644 89
Q ss_pred eeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHH
Q psy17091 915 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLIN 994 (1250)
Q Consensus 915 ~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~ 994 (1250)
+|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|++++.+.+||.+.+.....+...+..
T Consensus 99 ~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~lg~~~~~~~l~~~~~~~~~~~~~~~l~~ 178 (412)
T PRK00037 99 FKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKALGLKGLKLLINSLGDFEIRANYRKALVG 178 (412)
T ss_pred eEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHcCCCceeeeeccCCCHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988766655555555
Q ss_pred HHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCC
Q psy17091 995 YIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGM 1074 (1250)
Q Consensus 995 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~ 1074 (1250)
++... .. .+.+..........+..++.........+..++.+...+...++.++..+.++++..|+++.+||+++|++
T Consensus 179 ~l~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~~Dl~~~r~l 256 (412)
T PRK00037 179 FLEKG-LD-ELDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDEESKEHFEELKELLDALGIPYVIDPRLVRGL 256 (412)
T ss_pred HHHhC-ch-hhchHHHHHHhhCchhhhcccchhhHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHcCCCEEECCCcccCh
Confidence 66541 11 11111111111122223333222223344444555555556788899999999999999999999999999
Q ss_pred CCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccCCCCCCCCceEEEEEcChHHH
Q psy17091 1075 DYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAE 1154 (1250)
Q Consensus 1075 ~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~~~~~~~~~~v~V~~~~~~~~ 1154 (1250)
+||||++||+|.++.+...+||+|||||+|++.||+.+.|||||++++|||+.++.+++. +|++|+|++.+++..
T Consensus 257 ~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfs~~le~l~~~l~~~~~-----~~~~vlI~~~~~~~~ 331 (412)
T PRK00037 257 DYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPAVGFAIGVERLLLLLEELGE-----EPVDVYVVPLGEDAE 331 (412)
T ss_pred hhccceEEEEEECCCCccceeeeccchhHHHHHhCCCCCceEEEEEcHHHHHHHHHhcCC-----CCCCEEEEEeChHHH
Confidence 999999999999765545699999999999999997789999999999999999987643 678999999988778
Q ss_pred HHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehH
Q psy17091 1155 LKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFK 1234 (1250)
Q Consensus 1155 ~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~ 1234 (1250)
.++.+++++||+.|++|+++.. +.++++++++|++.|+||+++||++|+++|+|+||++.++ ++..|+++
T Consensus 332 ~~a~~i~~~Lr~~Gi~v~i~~~----~~~~~~~~~~a~~~gi~~~viig~~e~~~~~v~vr~~~~~------~~~~v~~~ 401 (412)
T PRK00037 332 LAALKLAEKLRAAGIRVELDYG----GRKLKKQFKYADKSGARFVLILGEDELANGTVTVKDLRTG------EQQTVPLD 401 (412)
T ss_pred HHHHHHHHHHHHCCCeEEEeCC----CCCHHHHHHHHHHcCCCEEEEEChhHHhCCeEEEEECCCC------ceEEeeHH
Confidence 8899999999999999999765 5789999999999999999999999999999999999999 89999999
Q ss_pred HHHHHHHHH
Q psy17091 1235 DAENYFYKK 1243 (1250)
Q Consensus 1235 el~~~l~~~ 1243 (1250)
|+++++++.
T Consensus 402 el~~~i~~~ 410 (412)
T PRK00037 402 ELVEALKEL 410 (412)
T ss_pred HHHHHHHHh
Confidence 999998865
No 33
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-53 Score=506.22 Aligned_cols=391 Identities=22% Similarity=0.353 Sum_probs=302.9
Q ss_pred CCCCCCCCCCcHHH----HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCC
Q psy17091 821 CFPNSNLICSKNSR----IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEG 896 (1250)
Q Consensus 821 ~~~~~~~~~p~~e~----i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~ 896 (1250)
|-+..+|-++.... .+.+.+++++||+. .|.+|..++.+.+.... ...+...++||+|+|+ +|+.++||||+
T Consensus 7 p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~-~i~tP~lE~~~~~~~~~--~~~~~~~~~~~~~~D~-~g~~l~LRpD~ 82 (423)
T PRK12420 7 VKGTKDYLPEEQVLRNKIKRALEDVFERYGCK-PLETPTLNMYELMSSKY--GGGDEILKEIYTLTDQ-GKRDLALRYDL 82 (423)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCE-eccccccchHHHHhccc--CCCcccccceEEEecC-CCceecccccc
Confidence 33444554444332 34678888999999 89999999999886211 1223445789999999 99999999999
Q ss_pred cHHHHHHHHHcCCCCCCCeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEe
Q psy17091 897 TASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLEL 976 (1250)
Q Consensus 897 T~~iaR~~a~~~~~~~~P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i 976 (1250)
|+|+||+++++. ..+.|+|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|+ ++.|+|
T Consensus 83 T~~iaR~va~~~-~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~lg~-~~~i~l 160 (423)
T PRK12420 83 TIPFAKVVAMNP-NIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRLNL-EVTIQY 160 (423)
T ss_pred cHHHHHHHHhCc-CCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHCCC-CEEEEE
Confidence 999999999863 346799999999999999999999999999999999999999999999999999999999 799999
Q ss_pred CCCcChhhHHHHH-------HHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHH--------HhhhhhHH-H
Q psy17091 977 NSIGNFNERKKYC-------IDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREI--------LINAPKLL-D 1040 (1250)
Q Consensus 977 ~~~~i~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--------~~~~~~~~-~ 1040 (1250)
||+++++++++.+ ..+...+++.... -.+.....+....+. ......+..+ +..+.... +
T Consensus 161 ~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~--~~~~~~~~l~~~~l~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 236 (423)
T PRK12420 161 NNRKLLNGILQAIGIPTELTSDVILSLDKIEKI--GIDGVRKDLLERGIS--EEMADTICNTVLSCLQLSIADFKEAFNN 236 (423)
T ss_pred cCHHHHHHHHHHcCCChhhhhchhhheechhhc--CHHHHHHHHHHcCCC--HHHHHHHHHHHhccChhhHHHHHHhccC
Confidence 9999999887543 1222211211110 001111111100000 0000001111 11111111 2
Q ss_pred HHHHhHHHHHHHHHHHHhhCCce--EEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCC--CCCCeE
Q psy17091 1041 YLEKDSLDHFYGIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSN--KFVPAS 1116 (1250)
Q Consensus 1041 ~l~~~~~~~l~~l~~~l~~~gi~--i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~--~~~pav 1116 (1250)
....+++++|.++.+.|+..|+. +.+||+++|+++||||+|||+|..+.+...+||+|||||+|++.|++ .+.|||
T Consensus 237 ~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~pAv 316 (423)
T PRK12420 237 PLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDDMNYPTV 316 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCccccccCCccHHHHHHHhCCCCCCCCce
Confidence 23356789999999999988864 89999999999999999999999865555689999999999999965 368999
Q ss_pred EEEEeHHHHHHHHHHccCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHH-cCCEEEEeeccccccccHHHHHHHHHHcC
Q psy17091 1117 GFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRT-LGLKVILNCVFNNIHESFKSQMKRANASN 1195 (1250)
Q Consensus 1117 Gfsi~lerl~~~l~~~~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~-~gi~v~~~~~~~~~~~s~~~~~~~A~~~g 1195 (1250)
|||+++|||+.++...+.. ..|+||+|++.++. ..+++++++||+ +|++|+++.. ..++++++++|++.|
T Consensus 317 Gfa~~~~~l~~~l~~~~~~---~~~~dvlI~~~~~~--~~a~~ia~~Lr~~~Gi~ve~~~~----~~~l~~~i~~A~~~g 387 (423)
T PRK12420 317 GISFGLDVIYTALSQKETI---SSTADVFIIPLGTE--LQCLQIAQQLRSTTGLKVELELA----GRKLKKALNYANKEN 387 (423)
T ss_pred eEEEcHHHHHHHHHhcCCC---CCCceEEEEEcCCH--HHHHHHHHHHHhhcCCeEEEecC----CcCHHHHHHHHHHcC
Confidence 9999999999998765432 25789999998653 468999999999 9999999877 678999999999999
Q ss_pred CCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHH
Q psy17091 1196 ANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDA 1236 (1250)
Q Consensus 1196 ip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el 1236 (1250)
+||+++||++|+++++|+||++.++ ++..|+++++
T Consensus 388 ~~~iviig~~e~~~~~v~vr~~~~~------~~~~v~~~~~ 422 (423)
T PRK12420 388 IPYVLIIGEEEVSTGTVMLRNMKEG------SEVKVPLSSL 422 (423)
T ss_pred CCEEEEEChhHHhcCeEEEEECCCC------ceeeeeHHHc
Confidence 9999999999999999999999998 8999999875
No 34
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=2.4e-48 Score=457.47 Aligned_cols=340 Identities=28% Similarity=0.398 Sum_probs=265.4
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCCe
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPK 915 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P~ 915 (1250)
+.+.++++++||. .|.+|..++.+.+.+. ..+...++||+|.|+.+|+.++||||+|+|+||+++++....+.|+
T Consensus 25 ~~l~~~f~~~Gy~-~i~tP~lE~~e~~~~~----~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~ 99 (391)
T PRK12292 25 RRLLDLFRRWGYE-EVITPTLEYLDTLLAG----GGAILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRPGPL 99 (391)
T ss_pred HHHHHHHHHcCCc-eeeCcchhhHHHHhcc----CCccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccCCCCCe
Confidence 4688888999999 7999999999987522 2233467899999974699999999999999999998755557899
Q ss_pred eEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHH-------
Q psy17091 916 RLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKY------- 988 (1250)
Q Consensus 916 r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~------- 988 (1250)
|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|++++.|+|||+++++++++.
T Consensus 100 r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~il~~~~~~~~~ 179 (391)
T PRK12292 100 RLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLPNFTLDLGHVGLFRALLEAAGLSEEL 179 (391)
T ss_pred EEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCCCeEEEeccHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987754
Q ss_pred HHHHHHHHHhccCchhhhHHHHHHhh---hccc-cccccccHHHHHHHhhhhhHHH-HHHHhHHHHHHHHHHHHhhCCc-
Q psy17091 989 CIDLINYIKKHKDSKWFCEDIKHSLY---LNSL-RVLDSKNLIIREILINAPKLLD-YLEKDSLDHFYGIQKILNYNNI- 1062 (1250)
Q Consensus 989 ~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l-~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~l~~~l~~~gi- 1062 (1250)
...+.+.+++..... .+.....+. ...+ .++...+ ..+.+..+..... .....++++|.++.+.++..|+
T Consensus 180 ~~~l~~~l~~~~~~~--~~~~~~~l~~~~~~~l~~l~~~~g--~~~~l~~~~~~~~~~~~~~~l~~L~~l~~~l~~~~~~ 255 (391)
T PRK12292 180 EEVLRRALANKDYVA--LEELVLDLSEELRDALLALPRLRG--GREVLEEARKLLPSLPIKRALDELEALAEALEKYGYG 255 (391)
T ss_pred HHHHHHHHHhcCHHH--HHHHHhcCCHHHHHHHHHHHHhcC--CHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhCCC
Confidence 234555555432110 011110000 0000 0000000 0112222222221 1124578999999999998865
Q ss_pred -eEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccCCCCCCCC
Q psy17091 1063 -SYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQ 1141 (1250)
Q Consensus 1063 -~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~~~~~~~~ 1141 (1250)
.+.|||+++|+++||||+|||+|.++.+. +|++|||||+|++.||. +.||||||+++|||+.+ . .+....+
T Consensus 256 ~~i~~D~~lvrgl~YYtG~vFe~~~~~~~~--~i~~GGRYD~L~~~fg~-~~pAvGfai~ldrl~~~--~---~~~~~~~ 327 (391)
T PRK12292 256 IPLSLDLGLLRHLDYYTGIVFEGYVDGVGN--PIASGGRYDDLLGRFGR-ARPATGFSLDLDRLLEL--Q---LELPVEA 327 (391)
T ss_pred ceEEEehhhccCCcCccceEEEEEECCCCC--cccCCcchhhHHHHcCC-CCCCceEEeeHHHHHhh--c---ccccccc
Confidence 59999999999999999999999986554 79999999999999964 69999999999999984 1 1122345
Q ss_pred ceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCC
Q psy17091 1142 CDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNA 1196 (1250)
Q Consensus 1142 ~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gi 1196 (1250)
.+++|++.+++...++++++++||+.|++|+++.. ..++++++++|++.|+
T Consensus 328 ~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~~~~~----~~~~~~~~~~a~~~~~ 378 (391)
T PRK12292 328 RKDLVIAPDSEALAAALAAAQELRKKGEIVVLALP----GRNFEDAREYARDRQI 378 (391)
T ss_pred CCcEEEEeCcccHHHHHHHHHHHHHcCCEEEEecC----CCChHHHHHHHhhcCe
Confidence 67888888888888899999999999999999876 5778999999999998
No 35
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=430.69 Aligned_cols=355 Identities=19% Similarity=0.237 Sum_probs=261.2
Q ss_pred CCCCCCCCCCcHHH----HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCC
Q psy17091 821 CFPNSNLICSKNSR----IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEG 896 (1250)
Q Consensus 821 ~~~~~~~~~p~~e~----i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~ 896 (1250)
|-+..++-++.... .+.+.++++++||. .|.+|..++.+.+.. ...+.....||+|.|+.+|+.++||||+
T Consensus 10 p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~-~I~tP~~E~~e~~~~----~~g~~~~~~~y~f~D~~~g~~l~LRpD~ 84 (392)
T PRK12421 10 PDGVADVLPEEAQKIERLRRRLLDLFASRGYQ-LVMPPLIEYLESLLT----GAGQDLKLQTFKLIDQLSGRLMGVRADI 84 (392)
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHHHcCCE-EeeCcchhhHHHHhc----cCCccchhceEEEEcCCCCcEEEECCcC
Confidence 33444454444333 34578888999999 899999999998752 2223344679999997358999999999
Q ss_pred cHHHHHHHHHcCCCCCCCeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEe
Q psy17091 897 TASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLEL 976 (1250)
Q Consensus 897 T~~iaR~~a~~~~~~~~P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i 976 (1250)
|+|+||+++++. ..+.|+|+||+|+|||+++++.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|++++.|+|
T Consensus 85 T~~iaR~~a~~~-~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~~~~l~i 163 (392)
T PRK12421 85 TPQVARIDAHLL-NREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVPALHLDL 163 (392)
T ss_pred CHHHHHHHHhhc-CCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCCCeEEEe
Confidence 999999888763 3367999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcChhhHHHH-------HHHHHHHHHhccCchhhhHHHHHHhhhc----cccccccccHHHHHHHhhhhhHH---HHH
Q psy17091 977 NSIGNFNERKKY-------CIDLINYIKKHKDSKWFCEDIKHSLYLN----SLRVLDSKNLIIREILINAPKLL---DYL 1042 (1250)
Q Consensus 977 ~~~~i~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~l~~l~~~~~~~~~~~~~~~~~~---~~l 1042 (1250)
||+++++++++. ...+.+++++.... .+.+.+......+ .+..+...... .+.+..+...+ ...
T Consensus 164 g~~~i~~~il~~l~l~~~~~~~l~~~l~kk~~~-~l~~~~~~~~~~~~~~~~l~~L~~~~g~-~~~l~~~~~~~~~~~~~ 241 (392)
T PRK12421 164 GHVGIFRRLAELAGLSPEEEEELFDLLQRKALP-ELAEVCQNLGVGSDLRRMFYALARLNGG-LEALDRALSVLALQDAA 241 (392)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHH-HHHHHHHhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHhhcccCCHH
Confidence 999999988753 34566666644322 1111111100000 01111111100 01111111111 122
Q ss_pred HHhHHHHHHHHHHHHhhC--CceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEE
Q psy17091 1043 EKDSLDHFYGIQKILNYN--NISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAI 1120 (1250)
Q Consensus 1043 ~~~~~~~l~~l~~~l~~~--gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi 1120 (1250)
..+++++|.++.+.++.. ++.+.+||+++|+++||||++||+|.++.+ .+|++|||||+|++.||. +.||||||+
T Consensus 242 ~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~vFe~~~~~~~--~~i~~GGRYD~L~~~fg~-~~pAvGfai 318 (392)
T PRK12421 242 IRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLVFAAYIPGRG--QALARGGRYDGIGEAFGR-ARPATGFSM 318 (392)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCEEEEEECCCC--CcccCCCCccchhHhhCC-CCCCceEEe
Confidence 345788888899888876 677999999999999999999999998654 489999999999999986 599999999
Q ss_pred eHHHHHHHHHHccCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEE
Q psy17091 1121 GIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAA 1200 (1250)
Q Consensus 1121 ~lerl~~~l~~~~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~v 1200 (1250)
++|||+.++...+ ..++++++.++. ..+++++++||+.|++|++++. + . -.++ +.++...+
T Consensus 319 ~lerL~~~l~~~~-------~~~~~~~~~~~~--~~~~~~a~~LR~~G~~~~~~~~----~-~----~~~~-~~~~~~~~ 379 (392)
T PRK12421 319 DLKELLALQFLEE-------EAGAILAPWGDD--PDLLAAIAELRQQGERVVQLLP----G-D----DGSS-EPGCDHRL 379 (392)
T ss_pred eHHHHHhhccccc-------CCceEEeecCCc--HHHHHHHHHHHhCCCEEEEeCC----C-c----chhH-HhCCCeEE
Confidence 9999998774211 126788777644 3578899999999999998754 1 1 1234 56888888
Q ss_pred EEccC
Q psy17091 1201 IIGEN 1205 (1250)
Q Consensus 1201 iig~~ 1205 (1250)
++++.
T Consensus 380 ~~~~~ 384 (392)
T PRK12421 380 VLQDG 384 (392)
T ss_pred EEECC
Confidence 88754
No 36
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=100.00 E-value=1.2e-41 Score=389.58 Aligned_cols=285 Identities=29% Similarity=0.435 Sum_probs=219.7
Q ss_pred HHHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCC
Q psy17091 834 RIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDG 913 (1250)
Q Consensus 834 ~i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~ 913 (1250)
-.+.+.++++++|+. .|.+|..++.+.+.. ... ...++||+|+|+ +|+.++||||+|+|+||+++++..+.+.
T Consensus 14 i~~~l~~~~~~~Gy~-~i~tP~le~~~~~~~---~~~--~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~ 86 (314)
T TIGR00443 14 IERQLQDVFRSWGYQ-EIITPTLEYLDTLSA---GGG--ILNEDLFKLFDS-LGRVLGLRPDMTTPIARAVSTRLRDRPL 86 (314)
T ss_pred HHHHHHHHHHHcCCe-eccCcchhhHHHhcc---cCC--cchhceEEEECC-CCCEEeecCcCcHHHHHHHHHhcccCCC
Confidence 345688899999999 899999999998752 111 356789999999 8999999999999999999987655578
Q ss_pred CeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHH-----
Q psy17091 914 PKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKY----- 988 (1250)
Q Consensus 914 P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~----- 988 (1250)
|+|+||+|+|||+++++.||+|||+|+|+|+||.++..+|+|+|.++.++|+.+|++++.|+|||+++++.+++.
T Consensus 87 p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~lg~~~~~i~l~~~~il~~il~~~~~~~ 166 (314)
T TIGR00443 87 PLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKALGLKDFKIELGHVGLVRALLEEAGLPE 166 (314)
T ss_pred CeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHcCCCCeEEEeCcHHHHHHHHHHcCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred --HHHHHHHHHhccCchhhhHHHHHHhhhc-----cccccccccHHHHHHHhhhhhHHH-HHHHhHHHHHHHHHHHHhhC
Q psy17091 989 --CIDLINYIKKHKDSKWFCEDIKHSLYLN-----SLRVLDSKNLIIREILINAPKLLD-YLEKDSLDHFYGIQKILNYN 1060 (1250)
Q Consensus 989 --~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~l~~~l~~~ 1060 (1250)
...+.+.+.+..... + +......... .+..+........+.+..+..... ....+++++|.++.+.++..
T Consensus 167 ~~~~~l~~~l~~~~~~~-~-~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~l~~l~~~~~~~~~~~~l~~l~~~~~~l~~~ 244 (314)
T TIGR00443 167 EAREALREALARKDLVA-L-EELLAELGLDPEVRERLLALPRLRGDGEEVLEEARALAGSETAEAALDELEAVLELLEAR 244 (314)
T ss_pred HHHHHHHHHHHhcCHHH-H-HHHHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHh
Confidence 245556655443221 1 1111000000 000000000000111111111111 11236788999999999988
Q ss_pred Cce--EEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHH
Q psy17091 1061 NIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIK 1130 (1250)
Q Consensus 1061 gi~--i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~ 1130 (1250)
|+. +.||++++|+++||||++||+|..+. ..+|++|||||+|++.|| .+.||||||+++|||+.++.
T Consensus 245 ~~~~~i~~D~~~~r~~~YYtGivFe~~~~~~--~~~i~~GGRYD~L~~~fg-~~~~AvGfa~~~d~l~~~l~ 313 (314)
T TIGR00443 245 GVEEYISLDLGLVRGYHYYTGLIFEGYAPGL--GAPIAGGGRYDNLLGRFG-RPLPATGFALNLERLLEALT 313 (314)
T ss_pred CCCCeEEEecccccCCCCccceEEEEEECCC--CCcccCCccHHHHHHHcC-CCCCCceEEecHHHHHHHhc
Confidence 875 99999999999999999999999743 459999999999999997 46999999999999998763
No 37
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=390.58 Aligned_cols=284 Identities=24% Similarity=0.354 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCC
Q psy17091 833 SRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYD 912 (1250)
Q Consensus 833 e~i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~ 912 (1250)
.-.+.+++++++|||. .|.+|..++.+.+.. ...+...++||+|.|+ +|+.++||||+|+|+||.++++ ..+
T Consensus 9 ~i~~~i~~~f~~~Gy~-~I~tP~lE~~e~~~~----~~g~~~~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~--~~~ 80 (373)
T PRK12295 9 AAAEALLASFEAAGAV-RVDPPILQPAEPFLD----LSGEDIRRRIFVTSDE-NGEELCLRPDFTIPVCRRHIAT--AGG 80 (373)
T ss_pred HHHHHHHHHHHHcCCE-EeeCCccccHHHhhh----ccCchhhcceEEEECC-CCCEEeeCCCCcHHHHHHHHHc--CCC
Confidence 4567789999999999 899999999987641 2223345789999999 9999999999999999998886 246
Q ss_pred CCeeEEEEeceeecCCCCCCCCCceEEeeEEEecC-CCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHH--
Q psy17091 913 GPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGF-PGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYC-- 989 (1250)
Q Consensus 913 ~P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~-~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~-- 989 (1250)
.|.|+||+|+|||++ .||+|||+|+|+|+||. +++.+|+|+|.++.++|+.+|++++.|+|||+++++++++.+
T Consensus 81 ~p~R~~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~~~~i~ig~~~il~~ll~~l~l 157 (373)
T PRK12295 81 EPARYAYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAALGPGDLEVRLGDVGLFAALVDALGL 157 (373)
T ss_pred CCeEEEEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHcCC
Confidence 899999999999988 68999999999999997 457899999999999999999999999999999999876432
Q ss_pred -----HHHHHHHHhccCchhhhH------------------------------------------------HHHHHhhhc
Q psy17091 990 -----IDLINYIKKHKDSKWFCE------------------------------------------------DIKHSLYLN 1016 (1250)
Q Consensus 990 -----~~~~~~l~~~~~~~~~~~------------------------------------------------~~~~~~~~~ 1016 (1250)
..+.+.+++......+.+ +....+...
T Consensus 158 ~~~~~~~l~~~i~kk~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~r~~~ei~~~l~~~ 237 (373)
T PRK12295 158 PPGWKRRLLRHFGRPRSLDALLARLAGPRVDPLDEHAGVLAALADEAAARALVEDLMSIAGISPVGGRSPAEIARRLLEK 237 (373)
T ss_pred CHHHHHHHHHHHhccchHHHHHHhhcccccccccchhhhhhhhccchhhhhhhhhhhhhccccccccccHHHHHHHHHhh
Confidence 344444443321100000 000000000
Q ss_pred -ccc---cccc-ccHHHHHH----------HhhhhhHHH--H-HHHhHHHHHHHHHHHHhhCCce---EEEeCCCCCCCC
Q psy17091 1017 -SLR---VLDS-KNLIIREI----------LINAPKLLD--Y-LEKDSLDHFYGIQKILNYNNIS---YKINTKLVRGMD 1075 (1250)
Q Consensus 1017 -~l~---~l~~-~~~~~~~~----------~~~~~~~~~--~-l~~~~~~~l~~l~~~l~~~gi~---i~~D~~~~~~~~ 1075 (1250)
.+. .+.. ....+.++ +.....+.. . ...+++++|.++.+.++.+|+. +.|||+++||++
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~l~~l~~~~~~~~~~al~~L~~l~~~l~~~g~~~~~v~~D~~~vrgl~ 317 (373)
T PRK12295 238 AALAAAARLPAEALAVLERFLAISGPPDAALAALRALAADAGLDLDAALDRFEARLAALAARGIDLERLRFSASFGRPLD 317 (373)
T ss_pred hcccccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHcCCCcceEEEecccccCCc
Confidence 000 0000 00001111 111111111 1 2345788899999999999863 999999999999
Q ss_pred CCcceEEEEEECCCCCCcceeecccchHHHHhcCC-CCCCeEEEEEeHHHHHHH
Q psy17091 1076 YYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSN-KFVPASGFAIGIERLIEL 1128 (1250)
Q Consensus 1076 YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~-~~~pavGfsi~lerl~~~ 1128 (1250)
||||+|||+|.++.+ ..+||+|||||+|++.||+ .+.||||||+++|||+.+
T Consensus 318 YYTGiVFe~~~~~~~-~~~I~~GGRYD~Li~~fg~~~~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 318 YYTGFVFEIRAAGNG-DPPLAGGGRYDGLLTRLGAGEPIPAVGFSIWLDRLAAL 370 (373)
T ss_pred cccceEEEEEECCCC-CCcccCCcCHHHHHHHhCCCCCCCeeEEEEcHHHHHhh
Confidence 999999999997653 4699999999999999985 679999999999998764
No 38
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=100.00 E-value=1.3e-40 Score=372.24 Aligned_cols=251 Identities=41% Similarity=0.644 Sum_probs=212.1
Q ss_pred HHHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCC
Q psy17091 834 RIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDG 913 (1250)
Q Consensus 834 ~i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~ 913 (1250)
-.+.+.++++++|+. .|.+|..+..+.+.+. .++...++||+|.|+ +|+.++||||+|+|+||+++++..+.+.
T Consensus 8 l~~~l~~~f~~~Gy~-~v~tP~le~~~~~~~~----~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~iaR~~a~~~~~~~~ 81 (261)
T cd00773 8 IEDTLREVFERYGYE-EIDTPVFEYTELFLRK----SGDEVSKEMYRFKDK-GGRDLALRPDLTAPVARAVAENLLSLPL 81 (261)
T ss_pred HHHHHHHHHHHcCCE-EeeccceeeHHHhccc----ccccccceEEEEECC-CCCEEEeCCCCcHHHHHHHHhcCccCCC
Confidence 356788999999999 8999999999987532 144467889999999 8999999999999999999987665578
Q ss_pred CeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHH
Q psy17091 914 PKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLI 993 (1250)
Q Consensus 914 P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~ 993 (1250)
|+|+||+|+|||+++++.||+|||+|+|+|+||.++..+|+|+|.++.++|+.+|++++.|+|||+++++++++.+
T Consensus 82 p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~~~~i~l~~~~i~~~l~~~~---- 157 (261)
T cd00773 82 PLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLKDFQIKINHRGILDGIAGLL---- 157 (261)
T ss_pred CeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHhhcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877643211
Q ss_pred HHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCc--eEEEeCCCC
Q psy17091 994 NYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNI--SYKINTKLV 1071 (1250)
Q Consensus 994 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi--~i~~D~~~~ 1071 (1250)
... ... ...+.+.+.+.++++|.++.+.++..|+ .+.+||+++
T Consensus 158 ------~~~----~~~-------------------------~~~l~~~l~~~~l~~l~~l~~~l~~~~~~~~i~~d~~~~ 202 (261)
T cd00773 158 ------EDR----EEY-------------------------IERLIDKLDKEALAHLEKLLDYLEALGVDIKYSIDLSLV 202 (261)
T ss_pred ------CCC----HHH-------------------------HHHHHHHhhHHHHHHHHHHHHHHHHcCCCceEEEcCccc
Confidence 110 000 0011122223678889999999998884 699999999
Q ss_pred CCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHH
Q psy17091 1072 RGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELI 1129 (1250)
Q Consensus 1072 ~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l 1129 (1250)
|+++||||++||+|.++.+...+||+|||||+|++.|++.+.||||||+++|||+.++
T Consensus 203 r~~~YYtG~vF~~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avGfa~~~d~l~~~~ 260 (261)
T cd00773 203 RGLDYYTGIVFEAVADGLGAQGSIAGGGRYDGLLEEFGGEDVPAVGFAIGLERLLLAL 260 (261)
T ss_pred cCCcccCceEEEEEECCCCccCeEeeccCHHHHHHHhCCCCCCeEEEEEcHHHHHHhh
Confidence 9999999999999998764457999999999999998766799999999999999875
No 39
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=3e-39 Score=400.43 Aligned_cols=357 Identities=17% Similarity=0.223 Sum_probs=290.8
Q ss_pred eEeeeccCCC--CCCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeecccc
Q psy17091 813 KINLIPFNCF--PNSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDEL 885 (1250)
Q Consensus 813 ~vnlip~n~~--~~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~ 885 (1250)
..+|+-|.|. .+..+-.|....+ +.+++.+.++|+. .|++|..++.+.+. ++++++.+.++||+|.|+
T Consensus 178 ~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~-ev~tP~l~~~~l~~---~sg~~~~~~~emy~~~d~- 252 (563)
T TIGR00418 178 ELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYM-EVETPIMYDLELWE---ISGHWDNYKERMFPFTEL- 252 (563)
T ss_pred hCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCE-EEECCccCCHHHHH---hcCCcccchhhcceeccC-
Confidence 3456667653 3333334444332 2356667889999 89999999999998 346889999999999998
Q ss_pred CCcccccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCCCC----CCCCceEEeeEEEecCCCchhchH---HH
Q psy17091 886 NGDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQY----GRYRQFYQIGVEAIGFPGPDIDAE---LI 957 (1250)
Q Consensus 886 ~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~~----gr~REf~Q~g~eiig~~~~~adaE---vi 957 (1250)
+|+.++|||+.|++++|+++.+..++ ++|+|+||+|++||+|..+. +|.|||+|.|+|+||. ...+++| ++
T Consensus 253 ~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i 331 (563)
T TIGR00418 253 DNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQF 331 (563)
T ss_pred CCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHHH
Confidence 89999999999999999999887655 68999999999999995431 4999999999999998 5666777 99
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhh
Q psy17091 958 IMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPK 1037 (1250)
Q Consensus 958 ~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 1037 (1250)
.++.++++.||++.+.+.+|.... . +++ .++..
T Consensus 332 ~~~~~~~~~lgl~~~~~~l~~~~~-~----------~~~---------~~~~~--------------------------- 364 (563)
T TIGR00418 332 RLIQKVYSDFGFSFDKYELSTRDP-E----------DFI---------GEDEL--------------------------- 364 (563)
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCh-h----------hhc---------CCHHH---------------------------
Confidence 999999999999888888885221 0 000 00000
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCC-------cceeecccchHH-HHhcC
Q psy17091 1038 LLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQ-------NSICGGGRYDFL-IKKFS 1109 (1250)
Q Consensus 1038 ~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~-------~~i~~GGRYD~L-~~~fg 1109 (1250)
...+...+.+.|+..|+++.+|+. +|++||+.+.|++ .+..|.. ..++.|||||.+ +...|
T Consensus 365 --------~~~~~~~~~~~l~~~~i~~~~~~~--~g~~y~~~~~f~~-~~~lg~~~~~~t~q~~~~~g~ryd~~~~~~~g 433 (563)
T TIGR00418 365 --------WEKAEAALEEALKELGVPYEIDPG--RGAFYGPKIDFAF-KDALGREWQCATVQLDFELPERFDLTYVDEDN 433 (563)
T ss_pred --------HHHHHHHHHHHHHhCCCceEEcCC--CcceecceEEEEe-ecCCCCceeeceeeeccCCHhhcCCEEECCCC
Confidence 001223355566678999999998 9999999999996 4444431 237889999995 88888
Q ss_pred CCCCCeE---EEEEeHHHHHHHHHHc--cCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccH
Q psy17091 1110 NKFVPAS---GFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESF 1184 (1250)
Q Consensus 1110 ~~~~pav---Gfsi~lerl~~~l~~~--~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~ 1184 (1250)
++..|++ ||++|+|||+.+|.++ +.+|.|.+|.+|+|++.+++...+|.++++.||++|++|++|+. ..++
T Consensus 434 ~~~~p~ii~~Gfa~gieRli~~l~e~~~~~~p~~~~p~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~----~~sl 509 (563)
T TIGR00418 434 EEKRPVMIHRAILGSIERFIAILLEKYAGNFPLWLAPVQVVVIPVNERHLDYAKKVAQKLKKAGIRVDVDDR----NERL 509 (563)
T ss_pred CEEeeEEEEeeccCcHHHHHHHHHHhccCCCCCcCCCceEEEEEccchHHHHHHHHHHHHHHcCCEEEEECC----CCCH
Confidence 8888985 9999999999999765 55777789999999999998899999999999999999999977 6899
Q ss_pred HHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHH
Q psy17091 1185 KSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKK 1243 (1250)
Q Consensus 1185 ~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~ 1243 (1250)
++++++|++.|+||+||||++|+++|+|+||++.++ ++..|++++++++++++
T Consensus 510 ~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g------~q~~v~~~el~~~i~~~ 562 (563)
T TIGR00418 510 GKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQ------KLEKMSLDEFLEKLRKE 562 (563)
T ss_pred HHHHHHHHhcCCCEEEEEchhhhhCCeEEEEECCCC------ccceeeHHHHHHHHHhh
Confidence 999999999999999999999999999999999999 89999999999888653
No 40
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=100.00 E-value=6.5e-40 Score=377.65 Aligned_cols=278 Identities=32% Similarity=0.472 Sum_probs=204.4
Q ss_pred HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCC
Q psy17091 835 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGP 914 (1250)
Q Consensus 835 i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P 914 (1250)
.+.+.++++++|+. .|.+|..++.+.+.... .. ..+++|+|+|+ +|+.++||||+|+|+||+++++.. ...|
T Consensus 17 ~~~l~~~f~~~Gy~-~i~~P~le~~~~~~~~~---~~--~~~~~~~~~D~-~G~~l~LR~D~T~~iaR~~a~~~~-~~~~ 88 (311)
T PF13393_consen 17 ESKLREVFERHGYE-EIETPLLEYYELFLDKS---GE--DSDNMYRFLDR-SGRVLALRPDLTVPIARYVARNLN-LPRP 88 (311)
T ss_dssp HHHHHHHHHHTT-E-E-B--SEEEHHHHHCHS---ST--TGGCSEEEECT-TSSEEEE-SSSHHHHHHHHHHCCG-SSSS
T ss_pred HHHHHHHHHHcCCE-EEECCeEeecHHhhhcc---cc--chhhhEEEEec-CCcEeccCCCCcHHHHHHHHHhcC-cCCC
Confidence 45688999999999 89999999999876322 11 13489999999 999999999999999999999753 6789
Q ss_pred eeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHH-HCCCCceEEEeCCCcChhhHHHHH----
Q psy17091 915 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWK-NLNLKNICLELNSIGNFNERKKYC---- 989 (1250)
Q Consensus 915 ~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~-~lgl~~~~i~i~~~~i~~~~~~~~---- 989 (1250)
.|+||+|+|||+++++.|++|||+|+|+|+||.++..+|+|+|.++.++|+ .+|++++.|+|||+++++.+++.+
T Consensus 89 ~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~~~~~i~i~h~~i~~~il~~~gl~~ 168 (311)
T PF13393_consen 89 KRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGLENFTIRINHTGILDAILEHLGLPE 168 (311)
T ss_dssp EEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEHHHHHHHHHHTTHHH
T ss_pred ceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCchhhHHHHhhcCCCh
Confidence 999999999999999999999999999999999999999999999999997 999999999999999999877554
Q ss_pred ---HHHHHHHHhccCchhhhHHHHH-Hhh---hccccccccccHHHHHHHhhhhhHHH--HHHHhHHHHHHHHHHHHhhC
Q psy17091 990 ---IDLINYIKKHKDSKWFCEDIKH-SLY---LNSLRVLDSKNLIIREILINAPKLLD--YLEKDSLDHFYGIQKILNYN 1060 (1250)
Q Consensus 990 ---~~~~~~l~~~~~~~~~~~~~~~-~~~---~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~~~~~~l~~l~~~l~~~ 1060 (1250)
..+.+.+.+.... .+.+...+ .+. ...+..+.........+ ......+. ....+++++|+.+.+.++..
T Consensus 169 ~~~~~l~~~l~~~~~~-~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~l-~~~~~~~~~~~~~~~~~~~L~~l~~~l~~~ 246 (311)
T PF13393_consen 169 DLRRELLEALDKKDLS-ELKELLSELGLSSESLEILDKLPELEGDPEAL-EELLESLPSSPALQEALEELEELLKLLEAL 246 (311)
T ss_dssp HHHHHHHHHHHHTHHH-HHHHHHHHTTTTHHHHHHHHHHHHHHHSHHHH-HHHHHHHTCSCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhheeccccc-cchhhhcccccchhhhhhhhccccccchHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 3344444332111 00000000 000 00000000000000000 00100010 01245788999999999988
Q ss_pred C---ceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHH
Q psy17091 1061 N---ISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERL 1125 (1250)
Q Consensus 1061 g---i~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl 1125 (1250)
| .+|.+||+++++++||||++||+|.++.+. +||+|||||+|++.|| ++.|||||++++|||
T Consensus 247 ~~~~~~i~~D~~~~r~~~YYtG~vFe~~~~~~~~--~ia~GGRYD~L~~~fg-~~~~AvGfai~ld~L 311 (311)
T PF13393_consen 247 GYPSIKIIFDLSLVRGLDYYTGIVFEVYAPGRGS--PIAGGGRYDNLLEQFG-KPIPAVGFAIGLDRL 311 (311)
T ss_dssp THTTTTEEEETT-GTSSTTEESEEEEEEETTSSS--ESEEEEEETTHHHHTT-SS-EEEEEEEEHHHH
T ss_pred cccCceEEEChhhccchhhcCCEEEEEEEcCCCc--eEecccChhHHHHHhC-CCCceEEEEEEeccC
Confidence 7 679999999999999999999999986554 9999999999999996 469999999999997
No 41
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=347.04 Aligned_cols=252 Identities=23% Similarity=0.315 Sum_probs=183.2
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCCe
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPK 915 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P~ 915 (1250)
+.+.++++.|||. .|.+|..+..+.... ...++||+|.|+ +|+.++||||+|+|+||+++++......|+
T Consensus 27 ~~l~~vf~~~Gy~-~I~tP~lE~~e~~~~--------~~~~~~y~~~D~-~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~ 96 (281)
T PRK12293 27 NVASEILYENGFE-EIVTPFFSYHQHQSI--------ADEKELIRFSDE-KNHQISLRADSTLDVVRIVTKRLGRSTEHK 96 (281)
T ss_pred HHHHHHHHHcCCe-Eeeccceeehhhhcc--------cchhceEEEECC-CCCEEEECCcCCHHHHHHHHHhcccCCCce
Confidence 4577788999999 899999998876521 245789999999 999999999999999999998754457899
Q ss_pred eEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHH
Q psy17091 916 RLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINY 995 (1250)
Q Consensus 916 r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~ 995 (1250)
|+||+|+|||+++ |||+|+|+|+||.+++ +|+|.++.++|+++|++ +.|+|||+++++++++...-..+.
T Consensus 97 r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~---~Evi~la~~~l~~lgl~-~~i~ig~~~i~~~~l~~~~~~~~~ 166 (281)
T PRK12293 97 KWFYIQPVFRYPS------NEIYQIGAELIGEEDL---SEILNIAAEIFEELELE-PILQISNIKIPKLVAEILGLDIEV 166 (281)
T ss_pred eEEEeccEEecCC------CcccccCeEeeCCCCH---HHHHHHHHHHHHHcCCC-CEEEECCHHHHHHHHHHcCCCHHH
Confidence 9999999999874 8999999999999986 69999999999999996 589999999999876533100000
Q ss_pred HHhccCchhhhHHHHHHhhhccccccccccH-HHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCc-eEEEeCCCCCC
Q psy17091 996 IKKHKDSKWFCEDIKHSLYLNSLRVLDSKNL-IIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNI-SYKINTKLVRG 1073 (1250)
Q Consensus 996 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi-~i~~D~~~~~~ 1073 (1250)
.++..... +.+.....+ ...+...+. .+.+.... ...++.+++..+.+.++..+. .+.+||+++||
T Consensus 167 ~~~~~~~~-~~~~~~~~l----~~l~~~~~~~~~~~~~~~-------~~~~~~~~l~~l~~~l~~l~~~~~~~Dl~~vrg 234 (281)
T PRK12293 167 FKKGQIEK-LLAQNVPWL----NKLVRIKTLEDLDEVIEL-------VPDEIKEELEKLKELAESIKYENLVIAPLYYAK 234 (281)
T ss_pred HhHHHHHH-HHHHhHHHH----HHHHhcCCHHHHHHHHhh-------CCHHHHHHHHHHHHHHHHcCCCcEEEccccccC
Confidence 00000000 000000000 000000110 11111111 112445566666666666665 58999999999
Q ss_pred CCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHH
Q psy17091 1074 MDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIK 1130 (1250)
Q Consensus 1074 ~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~ 1130 (1250)
++||||+|||+|.+ +. +|++|||||. .+.||||||+++|||+.+|.
T Consensus 235 l~YYTGivFe~~~~--~~--~i~~GGRYD~-------~~~PAvGfa~~ld~l~~~l~ 280 (281)
T PRK12293 235 MRYYDDLFFRFFDG--NS--TLASGGNYEI-------DGISSSGFALYTDNLIEILL 280 (281)
T ss_pred CCCccceEEEEEEC--Cc--eeccccCCCC-------CCCCcceEEeeHHHHHHHhh
Confidence 99999999999986 32 8999999992 45899999999999998874
No 42
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-36 Score=380.55 Aligned_cols=395 Identities=15% Similarity=0.221 Sum_probs=312.6
Q ss_pred hhhhhccCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCC
Q psy17091 745 NNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN 824 (1250)
Q Consensus 745 ~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~ 824 (1250)
...-+++-+ ..+|..+.++...+..++... + | =+.|++-+.- +... ...+|
T Consensus 215 ~~~l~Ri~g--~a~~~~~~l~~~~~~~~~~~~-~------------d----H~~l~~~~~l----~~~~------~~~~G 265 (639)
T PRK12444 215 NQVLQRIYG--VAFSSQKELEEYLHFVEEAAK-R------------N----HRKLGKELEL----FMFS------EEAPG 265 (639)
T ss_pred CcceEEEEE--EecCCHHHHHHHHHHHHHhcc-C------------C----HHHHHHHcCC----cccc------cccCc
Confidence 344455544 468887777776666665433 2 2 2345554432 1111 12334
Q ss_pred CCCCCCcHHH-----HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHH
Q psy17091 825 SNLICSKNSR-----IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTAS 899 (1250)
Q Consensus 825 ~~~~~p~~e~-----i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~ 899 (1250)
..+.-|.... .+.+.+.+.++|+. .|++|...+.+.+-+ +++++.+.++|| +.|. +|+.++|||+.|++
T Consensus 266 ~~~~~p~g~~~~~~i~~~~~~~~~~~G~~-~v~tP~l~~~~l~~~---sG~~~~~~~emy-~~d~-~~~~~~LrP~~~~~ 339 (639)
T PRK12444 266 MPFYLPKGQIIRNELEAFLREIQKEYNYQ-EVRTPFMMNQELWER---SGHWDHYKDNMY-FSEV-DNKSFALKPMNCPG 339 (639)
T ss_pred ceEEeeCHHHHHHHHHHHHHHHHHHcCCE-EEECCccCCHHHHhh---cCChhhhhhhcC-eecC-CCcEEEEccCCCHH
Confidence 4444444332 33467777889999 899999999999974 358889999999 8898 89999999999999
Q ss_pred HHHHHHHcCCCC-CCCeeEEEEeceeecCCCCC--C--CCCceEEeeEEEecCCCchhchH---HHHHHHHHHHHCCCCc
Q psy17091 900 VIRSVIENNLIY-DGPKRLWYSGPMFRHERPQY--G--RYRQFYQIGVEAIGFPGPDIDAE---LIIMCSRLWKNLNLKN 971 (1250)
Q Consensus 900 iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~~--g--r~REf~Q~g~eiig~~~~~adaE---vi~l~~~~l~~lgl~~ 971 (1250)
++|+++....++ ++|+|+||+|+|||+|+++. | |.|||+|.|+|+||..+. +++| ++.++.++++.||+ +
T Consensus 340 ~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~-~~~e~~~~~~~~~~i~~~lgl-~ 417 (639)
T PRK12444 340 HMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQ-IEDEIKSVMAQIDYVYKTFGF-E 417 (639)
T ss_pred HHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHH-HHHHHHHHHHHHHHHHHHcCC-c
Confidence 999998766665 78999999999999998764 6 999999999999998654 6666 89999999999999 6
Q ss_pred eEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHH
Q psy17091 972 ICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFY 1051 (1250)
Q Consensus 972 ~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 1051 (1250)
+.+.+++.. +. .+ .+..+ ...+. .
T Consensus 418 ~~~~~~~r~--~~----------~~--------G~~e~----------------------~~~~~--------------~ 441 (639)
T PRK12444 418 YEVELSTRP--ED----------SM--------GDDEL----------------------WEQAE--------------A 441 (639)
T ss_pred EEEEEECCc--cc----------cC--------CCHHH----------------------HHHHH--------------H
Confidence 899888742 00 00 00000 00000 2
Q ss_pred HHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchH---------HHHhcCCCCCCeEE---EE
Q psy17091 1052 GIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDF---------LIKKFSNKFVPASG---FA 1119 (1250)
Q Consensus 1052 ~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~---------L~~~fg~~~~pavG---fs 1119 (1250)
.+.+.|...|+++.++++ +|. || |.+|++...+.+.....++|||||. +++..|++..|++| +.
T Consensus 442 ~l~~~l~~~~~~y~~~~~--~ga-~Y-~~~~e~~~~~~~~~~~~~~t~~~d~~~~~~f~l~~~~~~g~~~~P~i~~~~~~ 517 (639)
T PRK12444 442 SLENVLQSLNYKYRLNEG--DGA-FY-GPKIDFHIKDALNRSHQCGTIQLDFQMPEKFDLNYIDEKNEKRRPVVIHRAVL 517 (639)
T ss_pred HHHHHHHHcCCCceeccC--Ccc-cc-cceEEEEeecCCCChhcccceeeecccccccceEEECCCCCccccEEEEECCC
Confidence 244566677889999988 788 99 9999999877666778999999998 77777877899998 88
Q ss_pred EeHHHHHHHHHHc--cCCCCCCCCceEEEEEcCh-HHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCC
Q psy17091 1120 IGIERLIELIKKI--NINHNFSHQCDIYIVHVGK-EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNA 1196 (1250)
Q Consensus 1120 i~lerl~~~l~~~--~~~~~~~~~~~v~V~~~~~-~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gi 1196 (1250)
+++|||+.+|.++ +.+|.|.+|.+|+|++.++ +...+|.+++++||++|++|++|+. ..++++++++|++.|+
T Consensus 518 g~ieRli~~L~e~~~~~~p~~~ap~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~veid~~----~~sl~kq~k~A~k~g~ 593 (639)
T PRK12444 518 GSLDRFLAILIEHFGGAFPAWLAPVQVKVIPVSNAVHVQYADEVADKLAQAGIRVERDER----DEKLGYKIREAQMQKI 593 (639)
T ss_pred CCHHHHHHHHHHhcCCCCCCccCCceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHHcCC
Confidence 8999999999775 5788889999999999998 6889999999999999999999977 6899999999999999
Q ss_pred CEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHh
Q psy17091 1197 NFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIK 1246 (1250)
Q Consensus 1197 p~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~ 1246 (1250)
||++|||++|+++|+|+||++.++ +|..++++++++.+.+++..
T Consensus 594 ~~~iiiG~~E~~~~~v~vr~~~t~------~q~~i~l~el~~~l~~~~~~ 637 (639)
T PRK12444 594 PYVLVIGDKEMENGAVNVRKYGEE------KSEVIELDMFVESIKEEIKN 637 (639)
T ss_pred CEEEEEcchhhhcCeEEEEECCCC------ceeeeeHHHHHHHHHHHhhc
Confidence 999999999999999999999999 89999999999999988864
No 43
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-36 Score=375.30 Aligned_cols=360 Identities=18% Similarity=0.267 Sum_probs=287.5
Q ss_pred EeeeccCCC--CCCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccC
Q psy17091 814 INLIPFNCF--PNSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELN 886 (1250)
Q Consensus 814 vnlip~n~~--~~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~ 886 (1250)
++|+-+++. ++..+-.|....+ +.+.+.+.++|+. .|.+|..++.+.+.. +++++.+.++||+|.|. +
T Consensus 185 ~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~-ev~tP~le~~~l~~~---sg~~~~~~~~my~~~d~-~ 259 (575)
T PRK12305 185 LDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYE-FVYTPHIGKSDLWKT---SGHLDNYKENMFPPMEI-D 259 (575)
T ss_pred cCccccccccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCE-EEECCccCCHHHHhh---cCCcccchhhccccccc-C
Confidence 445555553 2333344544333 3467777899999 899999999999973 46788889999999998 8
Q ss_pred CcccccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCCC----CCCCCceEEeeEEEecCCCchhc--hHHHHH
Q psy17091 887 GDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQ----YGRYRQFYQIGVEAIGFPGPDID--AELIIM 959 (1250)
Q Consensus 887 g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~----~gr~REf~Q~g~eiig~~~~~ad--aEvi~l 959 (1250)
|+.++|||+.|++++|++++...++ ++|+|+||+|+|||+|+++ .+|.|||+|+|+|+||.++..+| +|++.+
T Consensus 260 ~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l 339 (575)
T PRK12305 260 EEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDF 339 (575)
T ss_pred CceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHH
Confidence 9999999999999999999876655 7899999999999999885 35999999999999999888887 999999
Q ss_pred HHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHH
Q psy17091 960 CSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLL 1039 (1250)
Q Consensus 960 ~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 1039 (1250)
+.++|+.||++++.+.+|+..+ +. ++ ... +. +
T Consensus 340 ~~~~~~~lgl~~~~i~l~~r~~-~~----------~~---g~~---------------------------~~---~---- 371 (575)
T PRK12305 340 VLELLKDFGFKDYYLELSTREP-EK----------YV---GDD---------------------------EV---W---- 371 (575)
T ss_pred HHHHHHHcCCCeEEEEEeCCCh-hh----------cc---CCH---------------------------HH---H----
Confidence 9999999999889999999663 00 00 000 00 0
Q ss_pred HHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEE-CCCCCC---cce----eecccchH-HHHhcCC
Q psy17091 1040 DYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTT-DKLGSQ---NSI----CGGGRYDF-LIKKFSN 1110 (1250)
Q Consensus 1040 ~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~-~~~~~~---~~i----~~GGRYD~-L~~~fg~ 1110 (1250)
. .+ ...+.+.++..|++..++++ +..||+ ..|++.. +..+.. ..+ ..++|||- +.+..|.
T Consensus 372 ~----~~---~~~l~~~l~~~g~~~~~~~~---~~~~y~-~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~~~ 440 (575)
T PRK12305 372 E----KA---TEALREALEELGLEYVEDPG---GAAFYG-PKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAEDGK 440 (575)
T ss_pred H----HH---HHHHHHHHHhcCCCcEecCC---Cccccc-ccEEEEeeccCCCceeccceeeecccHhhCCCEEECCCCC
Confidence 0 00 12233445566777777776 778885 5577633 223332 222 35689994 6666666
Q ss_pred CCCCeE---EEEEeHHHHHHHHHHc--cCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHH
Q psy17091 1111 KFVPAS---GFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFK 1185 (1250)
Q Consensus 1111 ~~~pav---Gfsi~lerl~~~l~~~--~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~ 1185 (1250)
...|++ |+..++|||+.+|.++ +.||.|.+|.+|+|++++++...+|.+++++||++||+|++|++ ..+++
T Consensus 441 ~~~p~~ih~~~~G~~eRl~~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~----~~~l~ 516 (575)
T PRK12305 441 RQRPVMIHRALFGSIERFIGILTEHYAGAFPFWLAPVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTS----NERLN 516 (575)
T ss_pred ccCceEEEccccccHHHHHHHHHHHhCCCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECC----CCCHH
Confidence 668888 8888999999999874 67898899999999999999899999999999999999999987 67899
Q ss_pred HHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHhh
Q psy17091 1186 SQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIKN 1247 (1250)
Q Consensus 1186 ~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~~ 1247 (1250)
+++++|++.|+||+||||++|+++|+|+||++.++ ++..|+++++++.|++.+..+
T Consensus 517 kk~~~A~~~g~p~~iivG~~E~~~~~v~vr~~~~~------~q~~v~~~~l~~~l~~~~~~~ 572 (575)
T PRK12305 517 KKIRNAQKQKIPYMLVVGDKEVEAGTVSVRTRDGE------QLNGMPLDEFIELIKEKIAER 572 (575)
T ss_pred HHHHHHHhcCCCEEEEEechhhhCCEEEEEEcCCC------ceeeeeHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999 999999999999999888643
No 44
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.1e-35 Score=368.44 Aligned_cols=361 Identities=16% Similarity=0.216 Sum_probs=265.6
Q ss_pred eeeccCCC-CCCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCc
Q psy17091 815 NLIPFNCF-PNSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGD 888 (1250)
Q Consensus 815 nlip~n~~-~~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~ 888 (1250)
++.-|++. ++..+-.|....+ +.+++.+.++|+. .|.+|..++.+.+.. +++++.+.++||.|.|+ +|+
T Consensus 251 ~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~-ei~tP~le~~~l~~~---~g~~~~~~~~my~~~d~-~~~ 325 (638)
T PRK00413 251 DLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQ-EVKTPQILDRELWET---SGHWDHYRENMFPTTES-DGE 325 (638)
T ss_pred CEEEecCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCE-EEECCeeCCHHHHHh---cCChhhhhhccceeecC-CCc
Confidence 33344443 3444444554333 3467777899999 799999999999974 35667788999999999 899
Q ss_pred ccccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCCCC--C--CCCceEEeeEEEecCCCchh-c-hHHHHHHH
Q psy17091 889 NLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQY--G--RYRQFYQIGVEAIGFPGPDI-D-AELIIMCS 961 (1250)
Q Consensus 889 ~l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~~--g--r~REf~Q~g~eiig~~~~~a-d-aEvi~l~~ 961 (1250)
.++|||+.|++++|+++++..++ ++|+|+||+|+|||+|+++. | |.|||+|+|+|+||.+++.. | +|++.++.
T Consensus 326 ~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~ 405 (638)
T PRK00413 326 EYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLIL 405 (638)
T ss_pred EEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999877664 78999999999999998863 4 99999999999999887665 5 99999999
Q ss_pred HHHHHCCCCceEEEeCCC-----cChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhh
Q psy17091 962 RLWKNLNLKNICLELNSI-----GNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAP 1036 (1250)
Q Consensus 962 ~~l~~lgl~~~~i~i~~~-----~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1036 (1250)
++|+.||++++.+++||+ +.-+.+......+.+.+........ . ... . ..+. .+
T Consensus 406 ~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~--~--------~~~--~-------~~~~--~~ 464 (638)
T PRK00413 406 DVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYE--I--------APG--E-------GAFY--GP 464 (638)
T ss_pred HHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCce--e--------cCC--c-------cccc--cc
Confidence 999999999999999995 2211111111222222221110000 0 000 0 0000 00
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCC-CCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCe
Q psy17091 1037 KLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMD-YYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPA 1115 (1250)
Q Consensus 1037 ~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~-YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pa 1115 (1250)
. ++.....++.++.++ ..+.+|+++.++++ ||||.+ |....|+
T Consensus 465 ~-~~~~~~~~~~~~~~l--------~~~~~d~~~~~~~dl~Yt~~~---------------------------~~~~~p~ 508 (638)
T PRK00413 465 K-IDFQLKDALGREWQC--------GTIQLDFNLPERFDLTYVGED---------------------------GEKHRPV 508 (638)
T ss_pred e-EEEEeecCCCCeEEe--------ccEeecccChhhcCCEEECCC---------------------------CCccCcE
Confidence 0 000000000000000 02445555555555 455442 2233677
Q ss_pred E---EEEEeHHHHHHHHHHc--cCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHH
Q psy17091 1116 S---GFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKR 1190 (1250)
Q Consensus 1116 v---Gfsi~lerl~~~l~~~--~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~ 1190 (1250)
+ |++.++||++.+|.++ +.||.|.+|.+|+|++++++...+|.+++++||++|++|++|++ ..++++++++
T Consensus 509 ~i~~~~~g~~eRli~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~----~~~l~kki~~ 584 (638)
T PRK00413 509 MIHRAILGSMERFIGILIEHYAGAFPTWLAPVQVVVLPITDKHADYAKEVAKKLKAAGIRVEVDLR----NEKIGYKIRE 584 (638)
T ss_pred EEEecceehHHHHHHHHHHHcCCCCCcccCcceEEEEEeChhHHHHHHHHHHHHHhCCCEEEEECC----CCCHhHHHHH
Confidence 7 7888999999999774 78898899999999999988889999999999999999999987 6899999999
Q ss_pred HHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHhh
Q psy17091 1191 ANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIKN 1247 (1250)
Q Consensus 1191 A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~~ 1247 (1250)
|++.|+||+||||++|+++|+|+||++.++ ++..++++++++.+++.+..+
T Consensus 585 A~~~g~~~~iiiG~~E~~~~~v~vr~~~~~------~q~~i~~~~l~~~i~~~~~~~ 635 (638)
T PRK00413 585 AQLQKVPYMLVVGDKEVEAGTVSVRRRGGK------DLGTMSLDEFIERLLEEIASR 635 (638)
T ss_pred hhccCCCEEEEEcchhhhcCeEEEEECCCC------ccceeeHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999 899999999999999888643
No 45
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-35 Score=330.66 Aligned_cols=341 Identities=23% Similarity=0.252 Sum_probs=249.1
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCCe
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPK 915 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P~ 915 (1250)
++..+.|..+||. .|.+|..+..+.+- ....+..++++|++.|+ .|+.++||||+|+|+||.+++.... .|.
T Consensus 25 ~~l~~~f~~~Gy~-~v~tP~lE~~d~~l----~~~g~~l~~~~f~l~d~-~g~~l~LRpD~T~pVaR~~~~~~~~--~P~ 96 (390)
T COG3705 25 DQLLALFRAWGYE-RVETPTLEPADPLL----DGAGEDLRRRLFKLEDE-TGGRLGLRPDFTIPVARIHATLLAG--TPL 96 (390)
T ss_pred HHHHHHHHHhCCc-cccccccchhhhhh----hccchhhhhhheEEecC-CCCeEEecccccHHHHHHHHHhcCC--CCc
Confidence 4566777899999 89999999999864 23234557899999999 8889999999999999999998763 899
Q ss_pred eEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHH-------
Q psy17091 916 RLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKY------- 988 (1250)
Q Consensus 916 r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~------- 988 (1250)
|+||.|+|||..+...|+..||+|+|+|++|.++..+|+|||.++..+|+.+|+.++.+.|||.+++++.+..
T Consensus 97 Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~gl~~~~l~LG~~gif~all~~~~l~~~~ 176 (390)
T COG3705 97 RLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKALGLADLKLELGHAGIFRALLAAAGLPGGW 176 (390)
T ss_pred eeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHcCCcCeEEEeccHHHHHHHHHHcCCChhH
Confidence 9999999999886667888899999999999999999999999999999999999999999999999987633
Q ss_pred HHHHHHHHHhccCchhhhHHHHHHhhhcccc-ccccccHHHH------HHHhhhhhHHHHHH--HhHHHHHHHHHHHHhh
Q psy17091 989 CIDLINYIKKHKDSKWFCEDIKHSLYLNSLR-VLDSKNLIIR------EILINAPKLLDYLE--KDSLDHFYGIQKILNY 1059 (1250)
Q Consensus 989 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~~------~~~~~~~~~~~~l~--~~~~~~l~~l~~~l~~ 1059 (1250)
...+.+.+.+..... +..... ...+. ...+....+. +.+..+...+.... ..+++++..+.++.+.
T Consensus 177 ~~~L~~a~~~k~~~~-~~~~~~----~~~~~~~~~~~l~~l~~l~gg~e~l~~~~~~l~~~~~~~~al~~~~~l~di~~~ 251 (390)
T COG3705 177 RARLRRAFGDKDLLG-LELLVL----AAPLSPELRGRLSELLALLGGREVLERARGLLDELMAQGIALNEGRALADIARR 251 (390)
T ss_pred HHHHHHHHhccchhh-HHHHhh----ccCCChhhhHHHHHHHHHhCCHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhc
Confidence 355666665443221 000000 00000 0000000001 11122222222111 3456677777777777
Q ss_pred CCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccCCCCCC
Q psy17091 1060 NNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFS 1139 (1250)
Q Consensus 1060 ~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~~~~~~ 1139 (1250)
.+.++.+|++.+++++||||++|++|....+ +++++|||||++.+.|+.. .||+||+..++.|.. +..+...
T Consensus 252 ~~e~i~lDLg~l~~~~YyTg~~F~ay~~~~~--~al~~GGRYd~l~~~f~~~-~patGf~~~l~~l~~-----~~~~~~~ 323 (390)
T COG3705 252 LIEKIALDLGRLRHFDYYTGLVFLAYADGLG--DALASGGRYDGLLGLFGRA-APATGFALRLDALAQ-----GGLPLEE 323 (390)
T ss_pred cchhheehhhcccccchhhceeeeeeecccc--chhhcccchhhhhhhcCcc-ccchhhHhhHHHHHh-----cCCCccc
Confidence 6777999999999999999999999988555 5999999999999999986 699999999999987 3344445
Q ss_pred CCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccC
Q psy17091 1140 HQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGEN 1205 (1250)
Q Consensus 1140 ~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~ 1205 (1250)
.+.++.+....+.....++++++++|..|-.+-.... ..+ -..+...++.+.+.+...
T Consensus 324 ~~~~~~f~~~~~~~~~~~~e~~~~~r~~g~~~~~~l~-----~g~---~~~~~~~~~~~~~~~~~~ 381 (390)
T COG3705 324 RRYAALFGRELDYYTGAAFEAAQALRLAGGGRYDRLL-----TGL---GASEEIPGVGFSLWLDRG 381 (390)
T ss_pred chhhhccCccchhhHHHHHHHHHHhcccCCeEEEecc-----ccc---chHhhhcccceeEeeccc
Confidence 5666666665555567889999999966544433321 122 245556677777766443
No 46
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-33 Score=338.04 Aligned_cols=412 Identities=14% Similarity=0.188 Sum_probs=290.1
Q ss_pred EEccCCChhhhhccCCC-CCCCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEee
Q psy17091 738 VSLHASNNNLRNKLVPI-SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 816 (1250)
Q Consensus 738 ~sl~~~~~~~r~~~~p~-~~~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnl 816 (1250)
.|+-++-++.+..|..| ...+|-++-++.-....++..+| |=+.|++-+ +|
T Consensus 98 ~~~~~~g~~~~~~l~Riyg~~f~~~~~l~~~~~~~eea~~r-----------------dHr~lg~~l-----------~l 149 (545)
T PRK14799 98 LNISTHHPNPNEQYVRIRGVAFETEEQLKDYLTWLEKAEET-----------------DHRLIGEKL-----------DL 149 (545)
T ss_pred EEeccCCCccCceeEEEEEeecCCHHHHHHHHHHHHhcccC-----------------CHHHHHHHc-----------CC
Confidence 45555566666666543 24566666555444444443321 124455433 34
Q ss_pred eccCC--CCCCCCCCCcHHHHH-----HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcc
Q psy17091 817 IPFNC--FPNSNLICSKNSRIK-----IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDN 889 (1250)
Q Consensus 817 ip~n~--~~~~~~~~p~~e~i~-----~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~ 889 (1250)
.-|++ .++..+..|....+. .+++.+.++|+. .|.+|.....+.+. .+++++.+.++||.+ |. +++.
T Consensus 150 f~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~-eV~TP~i~~~eL~k---~SGh~~~y~~~mf~~-~~-~~e~ 223 (545)
T PRK14799 150 FSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQ-EVYTSHVFKTDIWK---ISGHYTLYRDKLIVF-NM-EGDE 223 (545)
T ss_pred cccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCe-EEECCccchHHHHh---hccccccchhhccee-ec-cCce
Confidence 44554 345556667655443 477777899999 79999999999987 388888999999998 76 7899
Q ss_pred cccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCCCC----CCCCceEEeeEEEecCCCch-hch-HHHHHHHH
Q psy17091 890 LSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQY----GRYRQFYQIGVEAIGFPGPD-IDA-ELIIMCSR 962 (1250)
Q Consensus 890 l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~~----gr~REf~Q~g~eiig~~~~~-ada-Evi~l~~~ 962 (1250)
++|||+.|+++++++++...++ ++|+|+|++|+|||+|.++. +|.|||+|+|+||||.+++. +|+ |++.++.+
T Consensus 224 ~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~ 303 (545)
T PRK14799 224 YGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVE 303 (545)
T ss_pred EEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987777 89999999999999999886 79999999999999998766 677 99999999
Q ss_pred HHHHCCCC--ceEEEeCCCcC-----hhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhh
Q psy17091 963 LWKNLNLK--NICLELNSIGN-----FNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINA 1035 (1250)
Q Consensus 963 ~l~~lgl~--~~~i~i~~~~i-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 1035 (1250)
+++.||++ ++.+.++++.. -+.+.+....+.+.+........ .... .. .+..
T Consensus 304 vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~---------------~~~g-~g---afyg-- 362 (545)
T PRK14799 304 VWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFG---------------IKEK-EG---AFYG-- 362 (545)
T ss_pred HHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeE---------------Eecc-ee---cccc--
Confidence 99999995 69999998751 01111122223333322211100 0000 00 0000
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCe
Q psy17091 1036 PKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPA 1115 (1250)
Q Consensus 1036 ~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pa 1115 (1250)
+. ++....+++.+..++.. +.+|+.+.+.++ + +....+.... .+.+.+
T Consensus 363 pk-iD~~v~dalgr~~q~~T--------iqldf~lp~rf~----L--ey~~~~~~~~-----------------~pv~ih 410 (545)
T PRK14799 363 PK-IDFEIRDSLGRWWQLST--------IQVDFNLPERFK----L--EYIDKDGIKK-----------------RPVMVH 410 (545)
T ss_pred Cc-cceEehhhcCchhhhhh--------hhhhcCcccccc----e--EEEcCCCCCc-----------------ccEEEE
Confidence 00 01111122222222222 224444433332 1 1111110000 011223
Q ss_pred EEEEEeHHHHHHHHHH--ccCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHH
Q psy17091 1116 SGFAIGIERLIELIKK--ININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANA 1193 (1250)
Q Consensus 1116 vGfsi~lerl~~~l~~--~~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~ 1193 (1250)
.|+.+|+||++.+|.+ .+.+|.|.+|.+|+|++++++...+|.++++.||++|++|++|++ ++++++++++|++
T Consensus 411 r~~~GgiERli~iL~e~~~G~~P~wlaP~qV~Iipi~e~~~~~A~~Ia~~LR~~GirVelD~~----~~~lgkkir~A~k 486 (545)
T PRK14799 411 RAIYGSIDRFVAILLEHFKGKLPTWLSSVQVRVLPITDEVNEYAEKVLNDMRKRRIRAEIDYA----GETLSKRIKNAYD 486 (545)
T ss_pred ccCCCCHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhCCCEEEEECC----CCCHHHHHHHHHH
Confidence 3888899999999987 478999899999999999999899999999999999999999987 6899999999999
Q ss_pred cCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHh
Q psy17091 1194 SNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIK 1246 (1250)
Q Consensus 1194 ~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~ 1246 (1250)
.|+||++|||++|+++|+|+||+|.++ ++..|+++++++.+.+++..
T Consensus 487 ~gip~viIIG~~E~e~~~VtVR~r~~~------eq~~v~l~eli~~l~~~i~~ 533 (545)
T PRK14799 487 QGVPYILIVGKKEASEGTVTVRARGNI------EVRNVKFEKFLELLITEIAQ 533 (545)
T ss_pred cCCCEEEEEChhHhhcCeEEEEECCCC------ceEEEcHHHHHHHHHHHHhh
Confidence 999999999999999999999999998 89999999999999999854
No 47
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.1e-31 Score=295.36 Aligned_cols=249 Identities=12% Similarity=0.111 Sum_probs=177.5
Q ss_pred HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeec-cccCCcccccCCCCcHHHHHHHHHcCCCCCC
Q psy17091 835 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFI-DELNGDNLSLRPEGTASVIRSVIENNLIYDG 913 (1250)
Q Consensus 835 i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~-D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~ 913 (1250)
...+.+.+++|||. .|.+|..++.+... . .. .+ ..+.+++++ |. +|+.++||||+|+|+||+++++. ..
T Consensus 14 e~~l~~~f~~~GY~-~I~tP~~E~~d~~~--~-~~-~~-~~~~~~~~~~~~-~Gr~laLRpD~T~~iAR~~a~~~---~~ 83 (272)
T PRK12294 14 ETAFLKYFNKADYE-LVDFSVIEKLDWKQ--L-NH-ED-LQQMGERSFWQH-EHQIYALRNDFTDQLLRYYSMYP---TA 83 (272)
T ss_pred HHHHHHHHHHcCCe-EeeCCcchhHHhhh--c-cc-cc-hhhhheeeeecC-CCCEEEEcCCCCHHHHHHHHhcC---CC
Confidence 45688999999999 89999999998852 1 11 12 224445544 55 89999999999999999988753 24
Q ss_pred CeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceE-EEeCCCcChhhHHHH---H
Q psy17091 914 PKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNIC-LELNSIGNFNERKKY---C 989 (1250)
Q Consensus 914 P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~-i~i~~~~i~~~~~~~---~ 989 (1250)
|.|+||+|+|||+++ +++|+|+|+||.+ ..+++|++.++.+++.++|..++. +.|||+++++++++. .
T Consensus 84 ~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~-~~a~~e~l~la~~~l~~~g~~~~~~i~lGh~~~~~~l~~~~~~~ 155 (272)
T PRK12294 84 ATKVAYAGLIIRNNE-------AAVQVGIENYAPS-LANVQQSFKLFIQFIQQQLRDNVHFVVLGHYQLLDALLDKSLQT 155 (272)
T ss_pred CceEEEeccEeccCC-------CcceeceEEECCC-chhHHHHHHHHHHHHHHhCCCCCcEEEeccHHHHHHHHhCHHHH
Confidence 679999999999874 4899999999944 788999999999999999877654 799999999987642 3
Q ss_pred HHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCc-eEEEeC
Q psy17091 990 IDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNI-SYKINT 1068 (1250)
Q Consensus 990 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi-~i~~D~ 1068 (1250)
..+++.+.+.... .+.+.+.. . ..+..+.... ....+..+...... ...++++|..+.+.++..+. .+.+|+
T Consensus 156 ~~l~~~l~~Kn~~-~l~~~l~~-~--~~l~~~l~~~--~~~~l~~a~~l~~~-~~~~~~~L~~l~~~l~~~~~~~i~~Dl 228 (272)
T PRK12294 156 PDILSMIEERNLS-GLVTYLST-E--HPIVQILKEN--TQQQLNVLEHYIPN-DHPALVELKIWERWLHTQGYKDIHLDI 228 (272)
T ss_pred HHHHHHHHhcCHH-HHHHHHhh-h--hhHHHHHHhc--hHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCCCeEEEcc
Confidence 3455555443221 11111110 0 0000000000 01122222222221 13577888888888877775 499999
Q ss_pred CCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCC
Q psy17091 1069 KLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSN 1110 (1250)
Q Consensus 1069 ~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~ 1110 (1250)
+++++++||||++|++|.++.+ .+|++|||||+|+++||.
T Consensus 229 ~~~r~~~YYTG~vF~~y~~~~~--~~i~~GGRYD~Ll~~Fg~ 268 (272)
T PRK12294 229 TAQPPRSYYTGLFIQCHFAENE--SRVLTGGYYKGSIEGFGL 268 (272)
T ss_pred cccCCCCCcCCeEEEEEECCCC--CcccCCcCchhHHHhcCC
Confidence 9999999999999999998654 599999999999999985
No 48
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.97 E-value=5.8e-31 Score=323.45 Aligned_cols=387 Identities=16% Similarity=0.160 Sum_probs=263.4
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC-CCCe
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGPK 915 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~ 915 (1250)
.+++.++++|+. .|.+|..+..+.+.+ +++++.+.++||+|.|+ .|+.++|||+.+.+++.++.....++ ++|+
T Consensus 56 ~i~~~~~~~G~~-ei~~P~l~~~~l~~~---sg~~~~~~~emf~~~d~-~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~ 130 (565)
T PRK09194 56 IVREEMNKIGAQ-EVLMPALQPAELWQE---SGRWEEYGPELLRLKDR-HGRDFVLGPTHEEVITDLVRNEIKSYKQLPL 130 (565)
T ss_pred HHHHHHHHcCCE-EEECcccCcHHHHhh---cCCccccchhceEEecC-CCCEEEECCCChHHHHHHHHhhhhhcccCCe
Confidence 466777889999 899999999999973 46788889999999998 89999999988877777776655444 7899
Q ss_pred eEEEEeceeecC-CCCCC--CCCceEEeeEEEecCCCchhch---HHHHHHHHHHHHCCCCceEEEeCCCcChhhHHH--
Q psy17091 916 RLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPDIDA---ELIIMCSRLWKNLNLKNICLELNSIGNFNERKK-- 987 (1250)
Q Consensus 916 r~yy~g~VfR~e-~~~~g--r~REf~Q~g~eiig~~~~~ada---Evi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~-- 987 (1250)
|+||++++||+| +|+.| |.|||+|.|+|+||.++..+|+ +++.++.++|++||+ +|.+.+++++.+.....
T Consensus 131 r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl-~~~~~~~~~g~~gg~~s~e 209 (565)
T PRK09194 131 NLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGL-DFRAVEADSGAIGGSASHE 209 (565)
T ss_pred EEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCC-ccEEEEcccccCCCceeEE
Confidence 999999999999 99999 9999999999999998888888 555666999999999 79999999888775321
Q ss_pred ----------------HH--HHHHHHHHhccC---c------------hhhhHHHHHHhhhc---------------ccc
Q psy17091 988 ----------------YC--IDLINYIKKHKD---S------------KWFCEDIKHSLYLN---------------SLR 1019 (1250)
Q Consensus 988 ----------------~~--~~~~~~l~~~~~---~------------~~~~~~~~~~~~~~---------------~l~ 1019 (1250)
.| .+-.+....... . ....++....+... ...
T Consensus 210 ~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~~~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~~~~l 289 (565)
T PRK09194 210 FMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEALEKVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADGELVA 289 (565)
T ss_pred EEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccceeecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeCCeEEE
Confidence 01 000000000000 0 00001111100000 000
Q ss_pred cccccc--HHHHHHHhhhhhHHHHHHHhHHHHHHHHHH----HHhhC----CceEEEeCCCCCCCCCCcceEEEEEEC--
Q psy17091 1020 VLDSKN--LIIREILINAPKLLDYLEKDSLDHFYGIQK----ILNYN----NISYKINTKLVRGMDYYNRTVFEWTTD-- 1087 (1250)
Q Consensus 1020 ~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~----~l~~~----gi~i~~D~~~~~~~~YYtG~vFe~~~~-- 1087 (1250)
.+-..+ ..+.++...... ..+.....+++..+.. .+... ++++.+|.++...-++|+|-....+.-
T Consensus 290 vvvp~d~~vn~~kl~~~lg~--~~l~~a~~eel~~~~g~~~G~v~P~Gl~~~v~viiD~sl~~~~~~~~gan~~g~h~~~ 367 (565)
T PRK09194 290 VLVRGDHELNEVKLENLLGA--APLELATEEEIRAALGAVPGFLGPVGLPKDVPIIADRSVADMSNFVVGANEDDYHYVG 367 (565)
T ss_pred EEeecchhhhHHHHHhhcCC--cccccCCHHHHHHhhCCCCCccCcccCCCCceEEEeccccccccccccCCCCCceeeC
Confidence 000000 001111000000 0011112223322221 11122 346889999887777776521111000
Q ss_pred ------------------CCCCCccee-----------------ecccchHHHHh-c---CCCCCCeE--EEEEeHHHHH
Q psy17091 1088 ------------------KLGSQNSIC-----------------GGGRYDFLIKK-F---SNKFVPAS--GFAIGIERLI 1126 (1250)
Q Consensus 1088 ------------------~~~~~~~i~-----------------~GGRYD~L~~~-f---g~~~~pav--Gfsi~lerl~ 1126 (1250)
..|...+-| =|-+|..-++. | .+...+.. .|+||++||+
T Consensus 368 ~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~lG~~ys~~~~~~~~~~~g~~~~~~m~~~gIGv~Rli 447 (565)
T PRK09194 368 VNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGTKYSEAMNATVLDENGKAQPLIMGCYGIGVSRLV 447 (565)
T ss_pred CccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEecCCcchhhccCCEEECCCCCEEeEEEeeEechHHHHH
Confidence 011111111 15566533221 1 11122332 6889999999
Q ss_pred HHHHHc-----c-CCCCCCCCceEEEEEcC---hHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCC
Q psy17091 1127 ELIKKI-----N-INHNFSHQCDIYIVHVG---KEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNAN 1197 (1250)
Q Consensus 1127 ~~l~~~-----~-~~~~~~~~~~v~V~~~~---~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip 1197 (1250)
.++.++ | .||.+.+|++|+|++.+ ++...++.++++.||++|++|++|++ +.++++++++|+..|||
T Consensus 448 ~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr----~~~~g~k~~~ad~~GiP 523 (565)
T PRK09194 448 AAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDR----KERPGVKFADADLIGIP 523 (565)
T ss_pred HHHHHhhccccCccCCCccCCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECC----CCCHHHHHHHHHhcCCC
Confidence 999986 5 79999999999999997 66778999999999999999999987 67999999999999999
Q ss_pred EEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHH
Q psy17091 1198 FAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFY 1241 (1250)
Q Consensus 1198 ~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~ 1241 (1250)
|+|+||++|+++|+|+||+|.++ ++..|+++++++.+.
T Consensus 524 ~~iiiG~~e~~~~~v~v~~r~~g------e~~~v~~~~l~~~i~ 561 (565)
T PRK09194 524 HRIVVGDRGLAEGIVEYKDRRTG------EKEEVPVDELVEFLK 561 (565)
T ss_pred EEEEEcCccccCCeEEEEECCCC------ceEEEeHHHHHHHHH
Confidence 99999999999999999999999 999999999998876
No 49
>PLN02908 threonyl-tRNA synthetase
Probab=99.97 E-value=5.6e-31 Score=329.19 Aligned_cols=353 Identities=14% Similarity=0.189 Sum_probs=262.4
Q ss_pred CCCCCCCCcHHHHH-----HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCc
Q psy17091 823 PNSNLICSKNSRIK-----IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGT 897 (1250)
Q Consensus 823 ~~~~~~~p~~e~i~-----~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T 897 (1250)
+|..+.-|....+. .+++.+.++|+. .|.+|.....+.+- .+++++.+.++||.| |. +++.++|||+.|
T Consensus 311 ~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~-ev~tP~l~~~~l~~---~sGh~~~~~~~mf~~-~~-~~~~~~Lrp~~~ 384 (686)
T PLN02908 311 PGSCFFLPHGARIYNKLMDFIREQYWERGYD-EVITPNIYNMDLWE---TSGHAAHYKENMFVF-EI-EKQEFGLKPMNC 384 (686)
T ss_pred CcceEEechHHHHHHHHHHHHHHHHHHcCCE-EEECCccccHHHHh---hcCCccccchhccEE-ec-CCeeEEEcCCCc
Confidence 34555556655443 477777899999 89999999999986 478888899999999 65 789999999999
Q ss_pred HHHHHHHHHcCCCC-CCCeeEEEEeceeecCCC----CCCCCCceEEeeEEEecC-CCchhch-HHHHHHHHHHHHCCCC
Q psy17091 898 ASVIRSVIENNLIY-DGPKRLWYSGPMFRHERP----QYGRYRQFYQIGVEAIGF-PGPDIDA-ELIIMCSRLWKNLNLK 970 (1250)
Q Consensus 898 ~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~----~~gr~REf~Q~g~eiig~-~~~~ada-Evi~l~~~~l~~lgl~ 970 (1250)
++++++++....++ ++|+|+|++|++||+|.+ +.+|.|||+|+++|+||. +...+|+ |++.++.++++.||+
T Consensus 385 ~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~- 463 (686)
T PLN02908 385 PGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGF- 463 (686)
T ss_pred HHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCC-
Confidence 99999999877777 899999999999999977 446999999999999998 5566677 999999999999999
Q ss_pred ceEEEeCCCc--Chhh---HHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHh
Q psy17091 971 NICLELNSIG--NFNE---RKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKD 1045 (1250)
Q Consensus 971 ~~~i~i~~~~--i~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 1045 (1250)
++.+.++++. ++.. +......+.+.+++.... + .......++.. +. ++....+
T Consensus 464 ~~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~-~-~~~~g~~afyg-------------------pk-id~~~~d 521 (686)
T PLN02908 464 TYELKLSTRPEKYLGDLETWDKAEAALTEALNAFGKP-W-QLNEGDGAFYG-------------------PK-IDITVSD 521 (686)
T ss_pred cEEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcCCC-c-EECCCceeecc-------------------cc-eEEEEEe
Confidence 6999999964 2222 222233455555543322 0 00000000000 00 0000011
Q ss_pred HHHHHHHHHHHHhhCCceEEEeCCCCC--CCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHH
Q psy17091 1046 SLDHFYGIQKILNYNNISYKINTKLVR--GMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIE 1123 (1250)
Q Consensus 1046 ~~~~l~~l~~~l~~~gi~i~~D~~~~~--~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~le 1123 (1250)
++.++.++. .+.+|+.+.. +++||| |. +. ....+.+.+.....++|
T Consensus 522 ~l~r~~~~~--------t~q~df~lp~~f~L~Y~~----e~-----~~---------------~~~~pv~ihrai~GsiE 569 (686)
T PLN02908 522 ALKRKFQCA--------TVQLDFQLPIRFKLSYSA----ED-----EA---------------KIERPVMIHRAILGSVE 569 (686)
T ss_pred ccCCEeecc--------ceeecccCHhhcCCEEEC----CC-----CC---------------cCCCCEEEEeCceEhHH
Confidence 222222222 2444554432 466765 10 00 00011122234555999
Q ss_pred HHHHHHHHc--cCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEE
Q psy17091 1124 RLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAI 1201 (1250)
Q Consensus 1124 rl~~~l~~~--~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~vi 1201 (1250)
|++.+|.++ +.||.|.+|.+|+|++++++...+|.+++++||++|++|++|.. +.++++++++|++.|+||++|
T Consensus 570 Rli~iL~e~~~g~~p~wlsp~qv~Vipv~~~~~~~A~~va~~LR~~Gi~vevd~~----~~~l~kkir~A~~~g~~~vii 645 (686)
T PLN02908 570 RMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVT----DRKIQKKVREAQLAQYNYILV 645 (686)
T ss_pred HHHHHHHHHcCCCCCCCCCCceEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHHcCCCEEEE
Confidence 999999887 78999999999999999999999999999999999999999876 689999999999999999999
Q ss_pred EccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHh
Q psy17091 1202 IGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIK 1246 (1250)
Q Consensus 1202 ig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~ 1246 (1250)
||++|+++|+|+||+++++ ++..++++++++.|++.+..
T Consensus 646 vG~~E~~~~~V~vr~~~~~------~q~~i~l~el~~~l~~~~~~ 684 (686)
T PLN02908 646 VGEAEAATGTVNVRTRDNV------VHGEKKIEELLTEFKEERAE 684 (686)
T ss_pred ECchHHhCCEEEEEECCCC------ceeeeeHHHHHHHHHHHHhh
Confidence 9999999999999999998 89999999999999877654
No 50
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=247.79 Aligned_cols=129 Identities=45% Similarity=0.728 Sum_probs=123.5
Q ss_pred HHhhhcccc--ccccchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccH
Q psy17091 422 FYRTFSLID--ALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDA 499 (1250)
Q Consensus 422 ~r~t~~li~--~~~~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~na 499 (1250)
+++||.+++ ...++++|+|+.+++++||+|+++||+++++++|++||++|+++|||+.|++||+|||+++|+|+|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 468999994 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 500 IKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 500 v~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
|+.+|++||+|||..|+|||||++||.+..+|.+|+++++...++.|--|.
T Consensus 82 i~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgSDs~esA~rEIa~~F 132 (135)
T COG0105 82 ISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPESAEREIALFF 132 (135)
T ss_pred HHHHHHHHCCCCcccCCCCeEeeehhcccCcceEEccCCHHHHhHHhhhcc
Confidence 999999999999999999999999999999999999999999999988774
No 51
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.96 E-value=6.6e-28 Score=287.18 Aligned_cols=360 Identities=16% Similarity=0.196 Sum_probs=231.8
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCC---CCcHHHHHHHHHcCCCCCC
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRP---EGTASVIRSVIENNLIYDG 913 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRp---D~T~~iaR~~a~~~~~~~~ 913 (1250)
.+++.+.++|+. .|.+|.....+.|- .+++++.+.++||++.|. .++.++||| +++.+++|....+++ ++
T Consensus 56 ~i~~~~~~~G~~-ev~~P~l~~~~l~~---~sg~~~~~~~emf~~~d~-~~~~~~L~Pt~e~~~~~~~~~~~~syr--dL 128 (439)
T PRK12325 56 IVREEQNRAGAI-EILMPTIQPADLWR---ESGRYDAYGKEMLRIKDR-HDREMLYGPTNEEMITDIFRSYVKSYK--DL 128 (439)
T ss_pred HHHHHHHHcCCE-EEECCccccHHHHh---hcCCccccchhheEEecC-CCCEEEEcCCCcHHHHHHHHHHhhhch--hh
Confidence 366777889999 89999999999985 447888899999999998 899999999 556677777776544 69
Q ss_pred CeeEEEEeceeecC-CCCCC--CCCceEEeeEEEecCCCch---hchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHH
Q psy17091 914 PKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPD---IDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKK 987 (1250)
Q Consensus 914 P~r~yy~g~VfR~e-~~~~g--r~REf~Q~g~eiig~~~~~---adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~ 987 (1250)
|+|+||+|+|||+| +|+.| |.|||+|.|+++|+.+... ...+++.++.++|+.||++.+.+..+... +.....
T Consensus 129 Plrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~-~gg~~s 207 (439)
T PRK12325 129 PLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLGLKAIPMRADTGP-IGGDLS 207 (439)
T ss_pred chHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEccCC-CCCCcc
Confidence 99999999999999 87778 9999999999999976433 35788888999999999975665544322 111000
Q ss_pred HHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhC-Cc--eE
Q psy17091 988 YCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYN-NI--SY 1064 (1250)
Q Consensus 988 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~-gi--~i 1064 (1250)
+.-.+.. .........|+.+.+..........+. ..+.+++........ .. ..+...-... +. .+
T Consensus 208 ~ef~~~~--~~Ge~~~~~c~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~ 275 (439)
T PRK12325 208 HEFIILA--ETGESTVFYDKDFLDLLVPGEDIDFDV--ADLQPIVDEWTSLYA-----AT---EEMHDEAAFAAVPEERR 275 (439)
T ss_pred eeeEeec--CCCCceEEEcCCchhhccCCCcccCCH--HHHHHHHhhhccccc-----ch---hhhhccCCCCcCCCcce
Confidence 0000000 000011111221110000000000000 111111100000000 00 0000000000 00 00
Q ss_pred EEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCe--EEEEEeHHHHHHHHHHc-----c-CCC
Q psy17091 1065 KINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPA--SGFAIGIERLIELIKKI-----N-INH 1136 (1250)
Q Consensus 1065 ~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pa--vGfsi~lerl~~~l~~~-----~-~~~ 1136 (1250)
..--++.-|..++-|..| ... -|-.|- ..-|. ..+. ..|++|++|++.+|.++ + .||
T Consensus 276 ~~~~~ievg~~~~lg~~y---s~~--------f~~~y~---d~~g~-~~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P 340 (439)
T PRK12325 276 LSARGIEVGHIFYFGTKY---SEP--------MNAKVQ---GPDGK-EVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWP 340 (439)
T ss_pred eecceEEEEeeecCcccc---cHh--------cCCEEE---CCCCC-EEeEEEeeeECCHHHHHHHHHHHhCccCCCcCC
Confidence 000000111222222221 000 000110 00011 1222 26888999999999987 5 899
Q ss_pred CCCCCceEEEEEc---ChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEE
Q psy17091 1137 NFSHQCDIYIVHV---GKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLI 1213 (1250)
Q Consensus 1137 ~~~~~~~v~V~~~---~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~ 1213 (1250)
.+.+|.+|+|+++ +++...++.++++.||++|++|++|++ +.++++++++|++.|+||+||||++|+++|+|+
T Consensus 341 ~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~----~~~lg~ki~~a~~~giP~~iiVG~~e~~~~~V~ 416 (439)
T PRK12325 341 ESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDT----DERPGAKFATMDLIGLPWQIIVGPKGLAEGKVE 416 (439)
T ss_pred CCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHhHHHHHHHHcCCCEEEEECCcccccCeEE
Confidence 9999999999999 566788999999999999999999987 689999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCcceeeehHHHHHHHH
Q psy17091 1214 IKDLRNKYEDPTLKQISISFKDAENYFY 1241 (1250)
Q Consensus 1214 vk~~~~~~~~~~~~e~~v~~~el~~~l~ 1241 (1250)
||+|.++ ++..|+++++++.++
T Consensus 417 vr~r~~~------~~~~v~~~el~~~i~ 438 (439)
T PRK12325 417 LKDRKTG------EREELSVEAAINRLT 438 (439)
T ss_pred EEEcCCC------ceEEEEHHHHHHHHh
Confidence 9999999 999999999988775
No 52
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=99.96 E-value=2.8e-29 Score=246.34 Aligned_cols=128 Identities=41% Similarity=0.612 Sum_probs=122.3
Q ss_pred Hhhhcccccccc--chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALEK--NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~~--~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||+++++... +++|+|+++|+++||.|+++||++||+++|++||++|+++|||++|++||+|||++||+|.|+|||
T Consensus 2 e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~nav 81 (137)
T PRK14542 2 SRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNAV 81 (137)
T ss_pred ceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 579999987664 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
++||++||||||..|.|+||||+||.+.++|++|+++.+....++|--|.
T Consensus 82 ~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF 131 (137)
T PRK14542 82 LHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDANAALEISFFF 131 (137)
T ss_pred HHHHHHhCCCCchhCCCCCchHHhcCcccceeEECCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998888887774
No 53
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.96 E-value=9.4e-28 Score=291.67 Aligned_cols=385 Identities=18% Similarity=0.203 Sum_probs=249.7
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCC----CcHHHHHHHHHcCCCCC
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPE----GTASVIRSVIENNLIYD 912 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD----~T~~iaR~~a~~~~~~~ 912 (1250)
.+++.+.++|+. .|.+|..+..+.+.+ +++++.+.++||+|.|+ .|+.++|||+ +|..++|.+.+. + +
T Consensus 56 ~i~~~~~~~G~~-ei~~P~l~~~el~~~---sg~~~~~~~emf~~~dr-~~~~l~LrPT~Ee~~t~~~~~~i~sy-r--~ 127 (568)
T TIGR00409 56 IVREEMNKDGAI-EVLLPALQPAELWQE---SGRWDTYGPELLRLKDR-KGREFVLGPTHEEVITDLARNEIKSY-K--Q 127 (568)
T ss_pred HHHHHHHHcCCE-EEECCccchHHHHhh---cCCCCccchhcEEEecC-CCCEEEEcCCCcHHHHHHHHHHHhhc-c--c
Confidence 355667889999 899999999999873 45677788999999999 8999999997 776666665543 2 5
Q ss_pred CCeeEEEEeceeecC-CCCCC--CCCceEEeeEEEecCCCchhchHHHHH---HHHHHHHCCCCceEEEeCCCcChhhHH
Q psy17091 913 GPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPDIDAELIIM---CSRLWKNLNLKNICLELNSIGNFNERK 986 (1250)
Q Consensus 913 ~P~r~yy~g~VfR~e-~~~~g--r~REf~Q~g~eiig~~~~~adaEvi~l---~~~~l~~lgl~~~~i~i~~~~i~~~~~ 986 (1250)
+|+|+||++++||+| +|+.| |.|||+|.|+++||.+...+|+|+..+ +.++|++||+ +|.+..++++.+....
T Consensus 128 LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL-~~~~v~~~~g~~gg~~ 206 (568)
T TIGR00409 128 LPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGL-DFRPVQADSGAIGGSA 206 (568)
T ss_pred cCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCC-cceEEEeccccCCCcc
Confidence 999999999999999 99999 999999999999999999999888866 5899999999 6888888776655421
Q ss_pred HH---------------H-----HHHHHHHHhc---cC-c------------hhhhHHHHHHhhhc--------------
Q psy17091 987 KY---------------C-----IDLINYIKKH---KD-S------------KWFCEDIKHSLYLN-------------- 1016 (1250)
Q Consensus 987 ~~---------------~-----~~~~~~l~~~---~~-~------------~~~~~~~~~~~~~~-------------- 1016 (1250)
.+ | .+-.+..... .. . ....++....+...
T Consensus 207 s~ef~~~~~~ge~~i~~c~~~~y~an~e~a~~~~~~~~~~~~~~~~~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~ 286 (568)
T TIGR00409 207 SHEFMVLAESGEDTIVYSDESDYAANIELAEALAPGERNAPTAELDKVDTPNTKTIAELVECFNLPAEKVVKTLLVKAVD 286 (568)
T ss_pred ceEEeEecCCCceEEEEecCcccchhhhhhcccCccccccccccceeecCCCCCcHHHHHHHhCCCHhHeeeEEEEEecC
Confidence 00 0 0000000000 00 0 00000000000000
Q ss_pred ----cccccccccHHHHHHHhhhhhHH---HHHHHhHHHHHHHHH----HHHhhC----CceEEEeCCCCCCCCCCcc--
Q psy17091 1017 ----SLRVLDSKNLIIREILINAPKLL---DYLEKDSLDHFYGIQ----KILNYN----NISYKINTKLVRGMDYYNR-- 1079 (1250)
Q Consensus 1017 ----~l~~l~~~~~~~~~~~~~~~~~~---~~l~~~~~~~l~~l~----~~l~~~----gi~i~~D~~~~~~~~YYtG-- 1079 (1250)
....+...+..+... +....+ ..+....-+++.... ..+... ++++.+|.++....++-+|
T Consensus 287 ~~~~~v~v~~rgd~~vn~~--k~~~~~g~~~~~~~a~~~~~~~~~g~~~g~~gpv~~~~~~~i~~D~~~~~~~~~~~gan 364 (568)
T TIGR00409 287 KSEPLVALLVRGDHELNEV--KAPNLLLVAQVLELATEEEIFQKIASGPGSLGPVNINGGIPVLIDQTVALMSDFAAGAN 364 (568)
T ss_pred CccceEEEEecCcchhhHH--HHHHHhccCcccccCCHHHHHHhhCCCCCccCccccccCceEEechhhhcccccccccC
Confidence 000000001111100 000000 000001111111111 111111 1346677775554444333
Q ss_pred --------eEEE----E--E----ECCCCCCccee-----------------ecccchHHHHhc----CCCCCCeE--EE
Q psy17091 1080 --------TVFE----W--T----TDKLGSQNSIC-----------------GGGRYDFLIKKF----SNKFVPAS--GF 1118 (1250)
Q Consensus 1080 --------~vFe----~--~----~~~~~~~~~i~-----------------~GGRYD~L~~~f----g~~~~pav--Gf 1118 (1250)
..+. . + .-..|...+.| =|-||..-++.. .+...|.. .+
T Consensus 365 ~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd~cp~c~~~l~~~rgIEvGhiF~LG~kYS~~~~~~~~d~~g~~~~~~mgcy 444 (568)
T TIGR00409 365 ADDKHYFNVNWDRDVAIPEVADIRKVKEGDPSPDGQGTLKIARGIEVGHIFQLGTKYSEALKATFLDENGKNQFMTMGCY 444 (568)
T ss_pred CCCceeecccccccCCccccchhhhhhccCCCCCCCCcccccceEEEEEeccchhhhHHhcCCEEECCCCCEEEEEEeCC
Confidence 2211 0 0 00011111211 156776543322 11122322 46
Q ss_pred EEeHHHHHHHHHHcc------CCCCCCCCceEEEEEcCh---HHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHH
Q psy17091 1119 AIGIERLIELIKKIN------INHNFSHQCDIYIVHVGK---EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMK 1189 (1250)
Q Consensus 1119 si~lerl~~~l~~~~------~~~~~~~~~~v~V~~~~~---~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~ 1189 (1250)
+||++|++.++.++. .||.+.+|++|.|++... +....|.++++.|.++|++|.+|++ +.++|++|+
T Consensus 445 GIGvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~~~~~~~a~~l~~~L~~~gi~v~~DDr----~~~~G~K~~ 520 (568)
T TIGR00409 445 GIGVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKDEEQQQLAEELYSELLAQGVDVLLDDR----NERAGVKFA 520 (568)
T ss_pred cchHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCChHHHHHHHHHHHHHHHhCCCEEEEECC----CCCHHHHHH
Confidence 689999999998843 699999999999999852 4667788999999999999999987 679999999
Q ss_pred HHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHH
Q psy17091 1190 RANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYK 1242 (1250)
Q Consensus 1190 ~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~ 1242 (1250)
.|+..|+||.|+||.+++++|+|+|++|.++ ++..|+++++++++..
T Consensus 521 dadliGiP~~i~vG~~~l~~~~Vei~~R~~~------~~~~v~~~~l~~~i~~ 567 (568)
T TIGR00409 521 DSELIGIPLRVVVGKKNLDNGEIEVKKRRNG------EKQLIKKDELVECLEE 567 (568)
T ss_pred hhhhcCCCEEEEECCCcccCCeEEEEEcCCC------ceEEEEHHHHHHHHhh
Confidence 9999999999999999999999999999998 9999999999998864
No 54
>KOG1191|consensus
Probab=99.95 E-value=5.6e-29 Score=279.00 Aligned_cols=383 Identities=23% Similarity=0.261 Sum_probs=240.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh-
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII- 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~- 81 (1250)
+.+.+.|++|+|||+|.|+ .....+.+.+++|+|...+...+..+.|+..||.|+.-....... .....++.
T Consensus 76 ~s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~~hgs~avv----~~~l~a~~~ 148 (531)
T KOG1191|consen 76 RSVMVPKRRNAGLRALYNP---EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQTHGSSAVV----VGVLTALGA 148 (531)
T ss_pred cccccCCCCccccccccCh---hhcccccCCCCcchhhhhhccccCCceeeeeeeEEEEEecCccch----hhHHHHhhh
Confidence 5678999999999999999 222347788999999999999999999999999998532211100 01111111
Q ss_pred --cCCEEEEEEeCCCCCChhhHHHHHHHHhc-C-CCEEEEEeCCCCCCCc-cc-hhHHhcCCC-CcEecccccC------
Q psy17091 82 --ESDIIIFIVDGRQGLVEQDKLITNFLRKS-G-QPIVLVINKSENINSS-IS-LDFYELGIG-NPHIISALYG------ 148 (1250)
Q Consensus 82 --~ad~il~v~D~~~~~~~~~~~~~~~l~~~-~-~p~ilv~NK~D~~~~~-~~-~~~~~~~~~-~~~~iSA~~g------ 148 (1250)
..+ + -..+........+.....+|.+. + ...|.+.|+.-....- +. .+++.+.++ ....+++.++
T Consensus 149 sg~~~-i-r~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~l~~~~r~~lIe~~a~l~a~id 226 (531)
T KOG1191|consen 149 SGIPG-I-RLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALALCFGWRKILIEALAGLEARID 226 (531)
T ss_pred ccCCC-c-cccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhcchhHHhhhhHHHHHHHHHhccceeec
Confidence 000 0 00111110000011111111110 0 1122222222110000 00 111111111 0011111111
Q ss_pred ----------------CchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccC
Q psy17091 149 ----------------NGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYD 212 (1250)
Q Consensus 149 ----------------~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~ 212 (1250)
.++..|.+.+...+...+.. + ..+.+++|+|+|+||||||||+|+|...++.+|++
T Consensus 227 f~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~-------e-~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp 298 (531)
T KOG1191|consen 227 FEEERPLEEIETVEIFIESLSLLDDVLSHLNKADEI-------E-RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSP 298 (531)
T ss_pred hhhcCchhhccchhhhhHHHHHHHHHHHHHHhhhhH-------H-HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC
Confidence 12223444444443322210 0 11346999999999999999999999999999999
Q ss_pred CCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHc
Q psy17091 213 TPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES 292 (1250)
Q Consensus 213 ~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~ 292 (1250)
.||||||.++..++.+|.++.|+||+|++. ...+.+|..++.++...++.||++++|+|+....++++..+.+.+...
T Consensus 299 v~GTTRDaiea~v~~~G~~v~L~DTAGiRe--~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~ 376 (531)
T KOG1191|consen 299 VPGTTRDAIEAQVTVNGVPVRLSDTAGIRE--ESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETE 376 (531)
T ss_pred CCCcchhhheeEeecCCeEEEEEecccccc--ccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHh
Confidence 999999999999999999999999999988 234678999999999999999999999999888889999988888763
Q ss_pred ------------CCcEEEEEeccccCCc-cchHH-HHHHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHHHHhhcccc
Q psy17091 293 ------------GRSLIVCVNKWDSIIH-NQRKI-IKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIH 358 (1250)
Q Consensus 293 ------------~~p~iiv~NK~Dl~~~-~~~~~-~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~ 358 (1250)
..|++++.||.|+..+ .+... ....... .....+..+.++|+++++|+++|.+++.+.+
T Consensus 377 ~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~------ 449 (531)
T KOG1191|consen 377 GVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIV------ 449 (531)
T ss_pred ccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccceEEEeeechhhhHHHHHHHHHHHH------
Confidence 3678889999998765 11111 0001111 1122344567799999999999998885443
Q ss_pred cChhHHHHHHHHHHHcC-CCcccccccceeeccccCCCCCCceEEEeCcCCCccHHHHHHHHHHHHhhhccccccccch
Q psy17091 359 LSTSRITRALISAIKNH-PPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYIGNDYKRYLEKYFYRTFSLIDALEKNI 436 (1250)
Q Consensus 359 ~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~q~~~~pp~fvif~n~~~~~~~~y~r~l~~~~r~t~~li~~~~~~~ 436 (1250)
.......+ +++....++.+.++.++. .| +.+.+|+.++++..++|-+.|++..
T Consensus 450 ---------~~~~~~~~s~~~t~~~~r~~~~~r~~~--~~--------------~l~~~~~~k~~~~D~~la~~~lR~a 503 (531)
T KOG1191|consen 450 ---------ERLVVSPHSAPPTLSQKRIKELLRTCA--AP--------------ELERRFLAKQLKEDIDLAGEPLRLA 503 (531)
T ss_pred ---------HHhhcCCCCCchhhcchhHHHHHHhhh--hh--------------hHHHHHHhhhcccchhhccchHHHH
Confidence 33333222 344455566666555543 22 7899999999999999999998754
No 55
>KOG1035|consensus
Probab=99.95 E-value=1.6e-27 Score=290.26 Aligned_cols=379 Identities=16% Similarity=0.170 Sum_probs=265.7
Q ss_pred HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCC
Q psy17091 835 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGP 914 (1250)
Q Consensus 835 i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P 914 (1250)
.+.+.++|++||.. .+.+|-..- .........+.+.++|+ +|-+++|++|++.||||++++|.. +-
T Consensus 939 ~e~~~~ifr~Hga~-~l~tpp~~~---------~~~~~~~~~~~v~~ld~-sG~~v~Lp~DLr~pfar~vs~N~~---~~ 1004 (1351)
T KOG1035|consen 939 VEEVVKIFRKHGAI-ELETPPLSL---------RNACAYFSRKAVELLDH-SGDVVELPYDLRLPFARYVSRNSV---LS 1004 (1351)
T ss_pred HHHHHHHHHHhcce-eccCCcccc---------ccccchhccceeeeecC-CCCEEEeeccccchHHHHhhhchH---HH
Confidence 45789999999987 666663211 11223456789999999 999999999999999999999765 78
Q ss_pred eeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHC-CCCceEEEeCCCcChhhHHHHH----
Q psy17091 915 KRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL-NLKNICLELNSIGNFNERKKYC---- 989 (1250)
Q Consensus 915 ~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~l-gl~~~~i~i~~~~i~~~~~~~~---- 989 (1250)
+|+|.++.|||.+. .. +|+|++||+|||||...-..|||+|.+++|++... .=.++.|++||+.++++++.+|
T Consensus 1005 ~Kry~i~rVyr~~~-~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~~n~~i~lnH~~LL~Ai~~~~~i~~ 1082 (1351)
T KOG1035|consen 1005 FKRYCISRVYRPAI-HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHEGNCDIHLNHADLLEAILSHCGIPK 1082 (1351)
T ss_pred HHHhhhheeecccc-cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhccCceeEEeChHHHHHHHHHHcCCCH
Confidence 99999999999776 44 99999999999999876688999999999998872 2268999999999999988665
Q ss_pred ---HHHHHHHHhccCchhhhHHHHHH--------------hhhccccccccccHHHHHH-HhhhhhHHHHHHHhHHHHHH
Q psy17091 990 ---IDLINYIKKHKDSKWFCEDIKHS--------------LYLNSLRVLDSKNLIIREI-LINAPKLLDYLEKDSLDHFY 1051 (1250)
Q Consensus 990 ---~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~ 1051 (1250)
..+.+.+........ .....+. +....+............. +-......+.+.. ++++|+
T Consensus 1083 ~~r~~v~~~l~~~~~~r~-~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vr-~L~eLe 1160 (1351)
T KOG1035|consen 1083 DQRRKVAELLSDMGSSRP-QRSEKELKWVFIRRSSLQLAKLPEFVLNRLFLVAGRFQALKLIRGKLRADSLVR-ALKELE 1160 (1351)
T ss_pred HHHHHHHHHHHHHhhccc-cHHHHHHHHhhhhHHHHHhhhhHHHHHhhhhhhhcchhhhHHHhhhhhhhHHHH-HHHHHH
Confidence 233333322111100 0000000 0000000000000000000 0111122233444 889999
Q ss_pred HHHHHHhhCCce--EEEeCCCCCCCCCCcceEEEEEECCC----CCCcceeecccchHHHHhcCCC----CCCeEEEEEe
Q psy17091 1052 GIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKL----GSQNSICGGGRYDFLIKKFSNK----FVPASGFAIG 1121 (1250)
Q Consensus 1052 ~l~~~l~~~gi~--i~~D~~~~~~~~YYtG~vFe~~~~~~----~~~~~i~~GGRYD~L~~~fg~~----~~pavGfsi~ 1121 (1250)
.+..++...|++ +.|+.+..+......|++|++.+... +.+..+++|||||.++..|+.. -.+|+|++ .
T Consensus 1161 ~~~~~~~~~~i~~~~~i~~g~~~~~~~~~g~~~qi~a~~~~~~~~~~~~la~GgRyd~~~~~~~~~~~~~~p~a~gv~-~ 1239 (1351)
T KOG1035|consen 1161 NVVGLLRSLGIEEHVHIYVGPTESRHRNGGIQFQITAEIKSNTSGDPVLLAAGGRYDSLLQEVRDEQKMNLPGAIGVS-A 1239 (1351)
T ss_pred HHHHHHHHhccccceEEeeccceeEEcCCcEEEEEeecccCCCcCCceeeecccchHHHHHHhhhhhhhcCcccceeh-h
Confidence 999999998874 66777776666667889999876422 3446799999999999998753 13566665 3
Q ss_pred HHHHHHHHHHccCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEE
Q psy17091 1122 IERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAI 1201 (1250)
Q Consensus 1122 lerl~~~l~~~~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~vi 1201 (1250)
+..+...+...-..++..+.|||+||+.+......+++++++||..||+|++.+. ...+..++..+|+..-|.++++
T Consensus 1240 ~~~~~~~~~~~~~~~~~~~~cdvlics~g~~l~t~~~~l~~~LWs~gI~a~i~~~---~s~~~~e~~e~~~~~~i~~ili 1316 (1351)
T KOG1035|consen 1240 LSTIRQHAPKDLEPIKTPSSCDVLICSRGSGLLTQRMELVAKLWSKGIKAEIVPD---PSPSLEELTEYANEHEITCILI 1316 (1351)
T ss_pred hHHHHHhhhccccCCCCcccccEEEEecCCchHHHHHHHHHHHHHcCcccceeeC---CCcchHHHHHHHhcCceEEEEE
Confidence 3333333322112345566899999999988889999999999999999999866 3577888889988876766666
Q ss_pred EccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHH
Q psy17091 1202 IGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 1244 (1250)
Q Consensus 1202 ig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i 1244 (1250)
+- ++..+||.+.-. +.++..+-..||++++.+.+
T Consensus 1317 v~-----n~~~~vks~~~e----~~se~~~~~~elv~f~~~~~ 1350 (1351)
T KOG1035|consen 1317 VT-----NQKEKVKSFELE----RKSEKVVGRTELVEFLLQAL 1350 (1351)
T ss_pred Ee-----cceeeechhHHh----hhhhhhhhHHHHHHHHHHhh
Confidence 64 577788877664 56888888899999998764
No 56
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=99.95 E-value=8e-29 Score=244.45 Aligned_cols=128 Identities=34% Similarity=0.621 Sum_probs=121.9
Q ss_pred Hhhhcccccccc--chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALEK--NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~~--~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||+++++... .++|+|++.|+++||.|+++||++||+++|++||++|+|+|||++|++||+|||+++|+|.|+|||
T Consensus 2 e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~nav 81 (140)
T PRK14541 2 ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENAV 81 (140)
T ss_pred ceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcHH
Confidence 579999987664 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
++||++||||||..|.|+||||+||++.++|++|+++.+....+++--|.
T Consensus 82 ~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~~fF 131 (140)
T PRK14541 82 ADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSAENAAIEAGFFF 131 (140)
T ss_pred HHHHHHhCCCCchhCCCCCchHHhcccccceeEECCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999988888887774
No 57
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=99.95 E-value=1.3e-28 Score=240.79 Aligned_cols=127 Identities=35% Similarity=0.562 Sum_probs=120.8
Q ss_pred HhhhccccccccchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHHHH
Q psy17091 423 YRTFSLIDALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAIKK 502 (1250)
Q Consensus 423 r~t~~li~~~~~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav~~ 502 (1250)
++||+++++....++|+|++.|+++||.|+++||++||+++|++||++|+|+|||++|++||+|||++||+|.|+|||++
T Consensus 1 erTl~iIKPdav~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav~~ 80 (131)
T cd04415 1 EKTLALIKPDAYSKIGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAISE 80 (131)
T ss_pred CeEEEEECcHHHHhHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHHHH
Confidence 36899998887667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCcccc---ccCCccchhhcchhhhhhhhcCChhHHHHHHHHH
Q psy17091 503 HRILIGDTDPIKA---AKGTIRADFAESIDKNIVHELGEMPFRAKQLQKW 549 (1250)
Q Consensus 503 ~r~l~G~~~~~~a---~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w 549 (1250)
||++||||||..| .|+||||+||.+.++|++|+++.+....++|--|
T Consensus 81 ~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei~~f 130 (131)
T cd04415 81 WRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFF 130 (131)
T ss_pred HHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHHHHHHhh
Confidence 9999999999998 8999999999999999999999998888887655
No 58
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=99.95 E-value=3.4e-28 Score=240.07 Aligned_cols=128 Identities=36% Similarity=0.603 Sum_probs=122.0
Q ss_pred Hhhhcccccccc--chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALEK--NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~~--~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||+++++... +++|+|++.|+++||.|+++||++||+++|++||++|+++|||++|++||+|||+++|+|.|+|||
T Consensus 4 e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~nav 83 (139)
T PRK14545 4 NRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENAV 83 (139)
T ss_pred ceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCHH
Confidence 579999987664 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
++||++||||||..|.|+||||+||.+.++|++|+++.+....+++--|.
T Consensus 84 ~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~fF 133 (139)
T PRK14545 84 EDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHF 133 (139)
T ss_pred HHHHHHhCCCCcccCCCCChhHHhcccccceeEECCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988888887664
No 59
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=99.95 E-value=3.4e-28 Score=239.12 Aligned_cols=128 Identities=34% Similarity=0.620 Sum_probs=121.6
Q ss_pred Hhhhcccccccc--chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALEK--NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~~--~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||+++++... +++|+|++.|+++||.|+++||++||+++|++||++|+++|||+.|++||+|||++||+|.|+|||
T Consensus 3 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~nav 82 (134)
T PRK14540 3 ERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENAI 82 (134)
T ss_pred eeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCChH
Confidence 579999987665 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
++||++||||||..|+|+|||+.||.+.++|++|+++.+....+++--|.
T Consensus 83 ~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~~fF 132 (134)
T PRK14540 83 STVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSKESAEREIKLFF 132 (134)
T ss_pred HHHHHHhCCCCcccCCCCcchhhhcccccceeEECCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988888876663
No 60
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=99.95 E-value=3.8e-28 Score=242.31 Aligned_cols=128 Identities=36% Similarity=0.673 Sum_probs=122.2
Q ss_pred Hhhhcccccccc--chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALEK--NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~~--~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||+++++... +++|+|++.|+++||.|+++||++||+++|++||++|+|+|||+.|++||+|||+++|+|.|+|||
T Consensus 3 e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~nav 82 (149)
T PTZ00093 3 ERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNVV 82 (149)
T ss_pred ceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCHH
Confidence 579999977654 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
++||++||||||..|.|+||||+||++.++|++|+++.+....+++--|.
T Consensus 83 ~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~fF 132 (149)
T PTZ00093 83 KQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVESAKREIALWF 132 (149)
T ss_pred HHHHHHhCCCCccccCCCcchhhhccccccceeecCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999998888887775
No 61
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.95 E-value=1.2e-26 Score=257.95 Aligned_cols=204 Identities=18% Similarity=0.279 Sum_probs=166.1
Q ss_pred eeeeecccCCcccccccccCCC---CcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCccCCCHHH
Q psy17091 617 TLCISTQVGCAINCIFCSTGRQ---GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 693 (1250)
Q Consensus 617 t~c~ssq~GC~~~C~fC~t~~~---~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GEpl~n~~~ 693 (1250)
.-++.+-.||+++|.||+++.. ...+.+|++||++++.....++. ....+|+|+| ||||+|+++
T Consensus 21 ~~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~------------~~~~~V~~sG-GEPll~~~~ 87 (246)
T PRK11145 21 IRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMN------------ASGGGVTASG-GEAILQAEF 87 (246)
T ss_pred eEEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHh------------cCCCeEEEeC-ccHhcCHHH
Confidence 3466667899999999998753 44678999999999987766543 2245799999 999999999
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEecCchhH----HHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHH
Q psy17091 694 TIGALKLILSDHAYGLSRRHVILSTSGIIPM----IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 769 (1250)
Q Consensus 694 v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~----i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~ 769 (1250)
+.++++.+++. +.+++++|||..+. ++++.+..+. +++|||+++++.|+++++. +.+.++++++.
T Consensus 88 ~~~l~~~~k~~------g~~i~l~TNG~~~~~~~~~~~ll~~~d~-v~islk~~~~e~~~~~~g~----~~~~~l~~i~~ 156 (246)
T PRK11145 88 VRDWFRACKKE------GIHTCLDTNGFVRRYDPVIDELLDVTDL-VMLDLKQMNDEIHQNLVGV----SNHRTLEFARY 156 (246)
T ss_pred HHHHHHHHHHc------CCCEEEECCCCCCcchHHHHHHHHhCCE-EEECCCcCChhhcccccCC----ChHHHHHHHHH
Confidence 99999999985 45899999998653 3444444453 5699999999999999664 45777877765
Q ss_pred HHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccc--eeEeeeccCCCCCC------------CCCCCcHHHH
Q psy17091 770 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTS--CKINLIPFNCFPNS------------NLICSKNSRI 835 (1250)
Q Consensus 770 ~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~--~~vnlip~n~~~~~------------~~~~p~~e~i 835 (1250)
.. +.+ .+++++++++||+||+++++++|++|++. ++ .+++|+||||.+.. ++++|+.+.+
T Consensus 157 l~-~~g-~~v~i~~~li~g~nd~~~ei~~l~~~l~~----l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 230 (246)
T PRK11145 157 LA-KRN-QKTWIRYVVVPGWTDDDDSAHRLGEFIKD----MGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETM 230 (246)
T ss_pred HH-hCC-CcEEEEEEEECCCCCCHHHHHHHHHHHHh----cCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHH
Confidence 44 444 48999999999999999999999999998 53 69999999998754 3568999999
Q ss_pred HHHHHHHHhCCCeEE
Q psy17091 836 KIFAKILMNSGIFVT 850 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ 850 (1250)
++|+++++++|+.++
T Consensus 231 ~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 231 ERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHHHcCCccc
Confidence 999999999998863
No 62
>PLN02619 nucleoside-diphosphate kinase
Probab=99.94 E-value=9e-28 Score=249.83 Aligned_cols=130 Identities=38% Similarity=0.602 Sum_probs=122.9
Q ss_pred HHHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEcccc
Q psy17091 421 YFYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGED 498 (1250)
Q Consensus 421 ~~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~n 498 (1250)
..++||.+|++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+|+|||++|++||+|||+++|+|+|+|
T Consensus 87 ~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~Gen 166 (238)
T PLN02619 87 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEG 166 (238)
T ss_pred hhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEECCc
Confidence 3468999997664 45699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 499 AIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 499 av~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+|++||++||||||..+.|+|||++||.+.++|++|+++.+....++|--|.
T Consensus 167 aV~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~fF 218 (238)
T PLN02619 167 VIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWF 218 (238)
T ss_pred HHHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998888888775
No 63
>PLN02931 nucleoside diphosphate kinase family protein
Probab=99.94 E-value=1.3e-27 Score=242.24 Aligned_cols=129 Identities=32% Similarity=0.461 Sum_probs=122.1
Q ss_pred HHhhhcccccccc--chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccH
Q psy17091 422 FYRTFSLIDALEK--NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDA 499 (1250)
Q Consensus 422 ~r~t~~li~~~~~--~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~na 499 (1250)
.++|++++++... +++|+|++.|+++||.|+++||++||+++|++||++|+|+|||++|++||+|||++||+|.|+||
T Consensus 29 ~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g~na 108 (177)
T PLN02931 29 EERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENA 108 (177)
T ss_pred ceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEecCCH
Confidence 3579999977764 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCcccc---ccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 500 IKKHRILIGDTDPIKA---AKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 500 v~~~r~l~G~~~~~~a---~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
|++||++||||||..| +|+||||+||.+.++|++|+++.+....++|--|.
T Consensus 109 V~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~~fF 162 (177)
T PLN02931 109 VSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFFF 162 (177)
T ss_pred HHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHHHHHHHhC
Confidence 9999999999999988 69999999999999999999999998888887774
No 64
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=99.94 E-value=1.5e-27 Score=234.26 Aligned_cols=127 Identities=27% Similarity=0.399 Sum_probs=120.6
Q ss_pred HhhhccccccccchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHHHH
Q psy17091 423 YRTFSLIDALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAIKK 502 (1250)
Q Consensus 423 r~t~~li~~~~~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav~~ 502 (1250)
++|+.++++....++|+|+++|+++||+|+++||++||+++|++||++|.|++||+.|++||+|||+++|+|.|+|||++
T Consensus 1 e~Tl~iIKPda~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV~~ 80 (132)
T cd04418 1 ERTLAIIKPDAVHKAEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAISY 80 (132)
T ss_pred CeEEEEECcHHHhhHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHHHH
Confidence 36889998888777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCcccc---ccCCccchhhcchhhhhhhhcCChhHHHHHHHHH
Q psy17091 503 HRILIGDTDPIKA---AKGTIRADFAESIDKNIVHELGEMPFRAKQLQKW 549 (1250)
Q Consensus 503 ~r~l~G~~~~~~a---~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w 549 (1250)
||++||||||..| .|+||||+||.+.++|++|+++.+....++|--|
T Consensus 81 ~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~~f 130 (132)
T cd04418 81 WKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFM 130 (132)
T ss_pred HHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHHHHHHhc
Confidence 9999999999999 8999999999999999999999998887877655
No 65
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=99.94 E-value=2.9e-27 Score=237.94 Aligned_cols=130 Identities=30% Similarity=0.561 Sum_probs=122.2
Q ss_pred HHHhhhcccccccc--chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhh-----hccCCcChHHHHHHHhcCCEEEEE
Q psy17091 421 YFYRTFSLIDALEK--NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYS-----IHKNRPFFKNLVNFMISGPVFIQV 493 (1250)
Q Consensus 421 ~~r~t~~li~~~~~--~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~-----~~~~~~~~~~l~~~~~sgp~v~~~ 493 (1250)
..++||+++++... +++|+|+.+|+++||+|+++||++||+++|++||. +|+|+|||+.|++||+|||++||+
T Consensus 4 ~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valv 83 (169)
T PRK14543 4 LIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFV 83 (169)
T ss_pred ccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEEE
Confidence 35689999977764 88999999999999999999999999999999995 899999999999999999999999
Q ss_pred EccccHHHHHHhhhCCCCccccccCCccchhhcc----------hhhhhhhhcCChhHHHHHHHHHH
Q psy17091 494 LEGEDAIKKHRILIGDTDPIKAAKGTIRADFAES----------IDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 494 l~g~nav~~~r~l~G~~~~~~a~p~siR~~~g~~----------~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
|.|+|||+.||++||||||..|.|+||||+||.+ .++|++|+++.+....++|--|.
T Consensus 84 l~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~~fF 150 (169)
T PRK14543 84 VEGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIPIWF 150 (169)
T ss_pred EECCCHHHHHHHHhCCCCccccCCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999997 78999999999998888887775
No 66
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=99.94 E-value=4.4e-27 Score=232.44 Aligned_cols=128 Identities=48% Similarity=0.739 Sum_probs=120.9
Q ss_pred Hhhhcccccccc--chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALEK--NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~~--~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++|++++++... .++|+|++.|.++||.|+++||++||+++|++||++|+|+|||++|++||+|||++||+|.|+|||
T Consensus 2 e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~nav 81 (134)
T PRK00668 2 ERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENAI 81 (134)
T ss_pred ceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchHH
Confidence 578999987764 778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
++||++|||+||..+.|+|||+.||.+.++|++|+++.+...++++--|.
T Consensus 82 ~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~fF 131 (134)
T PRK00668 82 AKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPESAAREIALFF 131 (134)
T ss_pred HHHHHHhCCCCccccCCCcchhhhccccccccEECCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988888876553
No 67
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=99.94 E-value=5.5e-27 Score=230.45 Aligned_cols=127 Identities=46% Similarity=0.742 Sum_probs=119.5
Q ss_pred Hhhhcccccccc--chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALEK--NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~~--~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++|++++++... .++|+|++.|.++||.|+++||++||+++|++||++|.|+|||+.|++||+||||++|+|.|+|||
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 368899977765 778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKW 549 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w 549 (1250)
++||++|||+||..|+|+|||+.||++.++|++|+++.+....+++--|
T Consensus 81 ~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~sd~~~~a~~E~~~f 129 (130)
T cd04413 81 KTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVESAEREIALW 129 (130)
T ss_pred HHHHHHhCCCCccccCCCCchhhhcccccccceECCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998887776544
No 68
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.94 E-value=1.3e-24 Score=265.26 Aligned_cols=350 Identities=13% Similarity=0.144 Sum_probs=249.1
Q ss_pred eEeeeccCCC--CCCCCCCCcHHHHH-----HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeecccc
Q psy17091 813 KINLIPFNCF--PNSNLICSKNSRIK-----IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDEL 885 (1250)
Q Consensus 813 ~vnlip~n~~--~~~~~~~p~~e~i~-----~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~ 885 (1250)
+.+|+-|+|. ++..+..|....+. -+.+.+.+.|+. .|.+|..-+.+.+- ..++++.+.++||.+.+
T Consensus 205 ~~~L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~-~V~tP~~~~~~~~~---~sgh~~~f~e~my~v~~-- 278 (613)
T PRK03991 205 EKELADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAM-PVETPIMYDLSHPA---IREHADKFGERQYRVKS-- 278 (613)
T ss_pred HCCCcccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCE-EEECCeecChhHHh---hcccccccchhceEecC--
Confidence 4466667663 23334445554433 355666789998 79999887776664 35677888999999854
Q ss_pred CCcccccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEec-eeecCCCCC--C--CCCceEEeeEEEecCCCchhc---hHH
Q psy17091 886 NGDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGP-MFRHERPQY--G--RYRQFYQIGVEAIGFPGPDID---AEL 956 (1250)
Q Consensus 886 ~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~-VfR~e~~~~--g--r~REf~Q~g~eiig~~~~~ad---aEv 956 (1250)
+++.++|||..|++++.++.....++ ++|+|+|++|+ +||+|.++. | |.|||+|.++++|+.+...+. .++
T Consensus 279 ~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~ 358 (613)
T PRK03991 279 DKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQ 358 (613)
T ss_pred CCceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHH
Confidence 46899999999999999999877666 88999999999 999997652 4 999999999999999644443 356
Q ss_pred HHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhh
Q psy17091 957 IIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAP 1036 (1250)
Q Consensus 957 i~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1036 (1250)
+.++.++++.||++ +.+.++..+ ++.....
T Consensus 359 l~~~~~i~~~lGl~-~~~~~~~t~------df~~~~~------------------------------------------- 388 (613)
T PRK03991 359 YEMILETGEDLGRD-YEVAIRFTE------DFYEENK------------------------------------------- 388 (613)
T ss_pred HHHHHHHHHHcCCC-eEEEecCHH------HHhhhHH-------------------------------------------
Confidence 77788999999994 777765421 0000000
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEEC-CCCCCcceeecc-cch-HHHHhc-----
Q psy17091 1037 KLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTD-KLGSQNSICGGG-RYD-FLIKKF----- 1108 (1250)
Q Consensus 1037 ~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~-~~~~~~~i~~GG-RYD-~L~~~f----- 1108 (1250)
..+.+.++..|.++.+... .+...|-|..+++... ..|. .+..|. -+| .+.+.|
T Consensus 389 --------------~~l~~~l~~~g~~~~~~~~--~g~~~~yg~kie~~~~d~~gr--~~q~~T~qld~~~~~~f~l~y~ 450 (613)
T PRK03991 389 --------------DWIVELVKREGKPVLLEIL--PERKHYWVLKVEFAFIDSLGR--PIENPTVQIDVENAERFGIKYV 450 (613)
T ss_pred --------------HHHHHHHHHcCCCEEeccc--CCccccCcCcEEEEEeCCCCC--EEEEeeeecCcccchhCCCEEE
Confidence 0011222223333322110 1112222333343221 1121 222221 111 111222
Q ss_pred ---CCCCCCeE-E--EEEeHHHHHHHHHHc--cC--------CCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEE
Q psy17091 1109 ---SNKFVPAS-G--FAIGIERLIELIKKI--NI--------NHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVI 1172 (1250)
Q Consensus 1109 ---g~~~~pav-G--fsi~lerl~~~l~~~--~~--------~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~ 1172 (1250)
|....|.+ | ...+++|++.++.++ +. ||.|.+|.+|+|++.+++...+|.+++++||++|++|+
T Consensus 451 d~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~e~~~~~A~eIa~~Lr~~GirV~ 530 (613)
T PRK03991 451 DENGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEAAGIRVD 530 (613)
T ss_pred CCCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEE
Confidence 22224643 3 445699999999884 23 99999999999999999999999999999999999999
Q ss_pred EeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHh
Q psy17091 1173 LNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIK 1246 (1250)
Q Consensus 1173 ~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~ 1246 (1250)
+|++ +.++++++++|++.|+||+||||++|+++|+|+||++.++ ++..|+++++++.+.+.+..
T Consensus 531 lDdr----~~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~------eq~~v~l~eli~~l~~~~~~ 594 (613)
T PRK03991 531 VDDR----DESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREES------EKVEMTLEELIERIKEETKG 594 (613)
T ss_pred EECC----CCCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCC------ceEEeeHHHHHHHHHHHHhc
Confidence 9987 6899999999999999999999999999999999999998 89999999999999988753
No 69
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=99.94 E-value=6.7e-27 Score=230.59 Aligned_cols=127 Identities=27% Similarity=0.411 Sum_probs=116.9
Q ss_pred Hhhhccccccccch---hhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccH
Q psy17091 423 YRTFSLIDALEKNI---VGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDA 499 (1250)
Q Consensus 423 r~t~~li~~~~~~~---vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~na 499 (1250)
++||+++++....+ .+.|++.+.++||.|+++||++||+++|++||++|++++||++|++||+|||++||+|.|+||
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 36889998776543 467888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCcccc---ccCCccchhhcchhhhhhhhcCChhHHHHHHHHH
Q psy17091 500 IKKHRILIGDTDPIKA---AKGTIRADFAESIDKNIVHELGEMPFRAKQLQKW 549 (1250)
Q Consensus 500 v~~~r~l~G~~~~~~a---~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w 549 (1250)
|++||++|||+||..| +|+|||++||++.++|++|+++.+....++|--|
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~f 133 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIALF 133 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHHHHHHhc
Confidence 9999999999999887 8999999999999999999999998888887655
No 70
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=99.93 E-value=1.1e-26 Score=229.28 Aligned_cols=126 Identities=27% Similarity=0.366 Sum_probs=118.3
Q ss_pred hhhccccccccch--hhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCC-cChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 424 RTFSLIDALEKNI--VGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNR-PFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 424 ~t~~li~~~~~~~--vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~-~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
+||.++++....+ +|+|++.|+++||.|+++||+++|+++|++||++|.|+ |||+.|++||+|||+++|+|.|+|||
T Consensus 2 ~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~nav 81 (134)
T cd04412 2 CTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENAV 81 (134)
T ss_pred cEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcHH
Confidence 5888997665444 99999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHhhhCCCCcccc---ccCCccchhhcchhhhhhhhcCChhHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKA---AKGTIRADFAESIDKNIVHELGEMPFRAKQLQKW 549 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a---~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w 549 (1250)
++||++||||||..| +|+||||+||++.++|++|+++.+...++++--|
T Consensus 82 ~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~~f 133 (134)
T cd04412 82 KTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFF 133 (134)
T ss_pred HHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHHhh
Confidence 999999999999988 8999999999999999999999998888887554
No 71
>PLN02837 threonine-tRNA ligase
Probab=99.93 E-value=1.6e-24 Score=267.49 Aligned_cols=343 Identities=15% Similarity=0.180 Sum_probs=249.8
Q ss_pred CCCCCCCcHHHHHH-----HHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcH
Q psy17091 824 NSNLICSKNSRIKI-----FAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTA 898 (1250)
Q Consensus 824 ~~~~~~p~~e~i~~-----f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~ 898 (1250)
+..|..|....+.. +.+.+.++|+. .|.+|..-+.+.|. .+++++.+.++||++.|. .++.++|||.-++
T Consensus 238 G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~-~v~tP~l~~~~l~~---~sGh~~~~~~~mf~~~~~-~~~~y~l~p~~~p 312 (614)
T PLN02837 238 GLVFWHPKGAIVRHIIEDSWKKMHFEHGYD-LLYTPHVAKADLWK---TSGHLDFYKENMYDQMDI-EDELYQLRPMNCP 312 (614)
T ss_pred cceEEechHHHHHHHHHHHHHHHHHHCCCE-EEECCccCCHHHHh---hcCCcccchhhcccccCC-CCceEEECCCCcH
Confidence 45666777655432 44555679998 79999999999987 567889999999999997 7889999999999
Q ss_pred HHHHHHHHcCCCC-CCCeeEEEEeceeecCCCC--CC--CCCceEEeeEEEecCCCchh--chHHHHHHHHHHHHCCCCc
Q psy17091 899 SVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQ--YG--RYRQFYQIGVEAIGFPGPDI--DAELIIMCSRLWKNLNLKN 971 (1250)
Q Consensus 899 ~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~--~g--r~REf~Q~g~eiig~~~~~a--daEvi~l~~~~l~~lgl~~ 971 (1250)
.++-++.....++ ++|+|++++++|||+|..+ .| |.|||+|.+.++|+.++... -.+++.++.++++.||+..
T Consensus 313 ~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~ 392 (614)
T PLN02837 313 YHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSK 392 (614)
T ss_pred HHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 9999888876666 8899999999999999753 24 99999999999999876432 2467788889999999987
Q ss_pred eEEEeCCCcC--hh---hHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhH
Q psy17091 972 ICLELNSIGN--FN---ERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDS 1046 (1250)
Q Consensus 972 ~~i~i~~~~i--~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 1046 (1250)
+.+.++.... +. .+......+.
T Consensus 393 ~~~~~~t~~~~~~g~~~~w~~~~~~l~----------------------------------------------------- 419 (614)
T PLN02837 393 YEINLSTRPEKSVGSDDIWEKATTALR----------------------------------------------------- 419 (614)
T ss_pred EEEEecCCchhccCCHHHHHHHHHHHH-----------------------------------------------------
Confidence 8888886430 00 0000001111
Q ss_pred HHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCC-CCCc-------ceeecccchHH-HHhcCCCCCCeE-
Q psy17091 1047 LDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKL-GSQN-------SICGGGRYDFL-IKKFSNKFVPAS- 1116 (1250)
Q Consensus 1047 ~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~-~~~~-------~i~~GGRYD~L-~~~fg~~~~pav- 1116 (1250)
+.|+..|+.+.++++ ...|| |.-+++...+. |..- ...-+-|||-- ...-|....|.+
T Consensus 420 --------~~l~~~~~~~~~~~g---~~afy-gpkid~~~~d~~gr~~q~~tiqldf~~~~~f~l~y~~~d~~~~~pv~i 487 (614)
T PLN02837 420 --------DALDDKGWEYKVDEG---GGAFY-GPKIDLKIEDALGRKWQCSTIQVDFNLPERFDITYVDSNSEKKRPIMI 487 (614)
T ss_pred --------HHHHHcCCCceeCCC---ccccc-CcceeeEeeccCCceeeecceeEeecchhhcCcEEECCCCCccCCEEE
Confidence 112222333333332 12233 22223322211 1100 00112344311 111122234555
Q ss_pred --EEEEeHHHHHHHHHHc--cCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHH
Q psy17091 1117 --GFAIGIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRAN 1192 (1250)
Q Consensus 1117 --Gfsi~lerl~~~l~~~--~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~ 1192 (1250)
+.-.++||++.+|.+. +.||.|.+|.+|+|++.+++...+|.+++++||+.|++|+++ . +.++++++++|+
T Consensus 488 h~~~~G~~eRlia~Lie~~~g~~P~~laP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev~-~----~~slgkkir~A~ 562 (614)
T PLN02837 488 HRAILGSLERFFGVLIEHYAGDFPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEVC-H----GERLPKLIRNAE 562 (614)
T ss_pred EcCCccCHHHHHHHHHHHcCCCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEe-C----CCCHHHHHHHHH
Confidence 4444899999999986 789999999999999999888899999999999999999994 4 478999999999
Q ss_pred HcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHhh
Q psy17091 1193 ASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIKN 1247 (1250)
Q Consensus 1193 ~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~~ 1247 (1250)
+.|+||+|+||++|+++|+|+||++.++ ++..++++++++.+.+++..+
T Consensus 563 ~~gip~~IiIG~~E~e~~~VtVr~r~~g------eq~~v~~~el~~~l~~~~~~~ 611 (614)
T PLN02837 563 TQKIPLMAVVGPKEVETRTLTVRSRHGG------ELGTMPVDDFINRIQLAVENR 611 (614)
T ss_pred HcCCCEEEEEcchhhhcCEEEEEECCCC------ceeEeeHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999 899999999999999988643
No 72
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.93 E-value=6.9e-25 Score=260.68 Aligned_cols=305 Identities=17% Similarity=0.165 Sum_probs=213.6
Q ss_pred HHHHHHHh--CCCeEEEeccCccchHHhhhhcCCccccccccceeeecc--------c----------------------
Q psy17091 837 IFAKILMN--SGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFID--------E---------------------- 884 (1250)
Q Consensus 837 ~f~~iL~~--~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D--------~---------------------- 884 (1250)
.+++.+.. .|+. .|.+|..-..+.|- +++|++.+.+.||.... .
T Consensus 47 ~~r~~~~~~~~~~~-ev~tp~i~~~~l~~---~SGH~~~f~d~m~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~ 122 (456)
T PRK04173 47 AWWKSFVQEREDVV-GIDSPIIMPPEVWE---ASGHVDNFSDPLVECKKCKKRYRADHLIEELGIDAEGLSNEELKELIR 122 (456)
T ss_pred HHHHHHHhccCCEE-EEeccccCCHHHHh---hcCCccccCCceeEeCCCCCEeechhhhHHHhhhhccccHHHHHHHHH
Confidence 35555555 6887 89999999999887 88999999999998741 1
Q ss_pred -------c-------------------------CCcccccCCCCcHHHHHHHHHcCCCC--CCCeeEEEEeceeecCCC-
Q psy17091 885 -------L-------------------------NGDNLSLRPEGTASVIRSVIENNLIY--DGPKRLWYSGPMFRHERP- 929 (1250)
Q Consensus 885 -------~-------------------------~g~~l~LRpD~T~~iaR~~a~~~~~~--~~P~r~yy~g~VfR~e~~- 929 (1250)
. ++..+.|||+....+.=.+.+...++ ++|+|++++|+|||+|.+
T Consensus 123 ~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~ 202 (456)
T PRK04173 123 ENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITP 202 (456)
T ss_pred HhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCC
Confidence 0 01123355555544433333322222 599999999999999944
Q ss_pred CCC--CCCceEEeeEEEecCCCchhc--hHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhh
Q psy17091 930 QYG--RYRQFYQIGVEAIGFPGPDID--AELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWF 1005 (1250)
Q Consensus 930 ~~g--r~REf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~ 1005 (1250)
..| |.|||+|.++|+|+.++...+ ..++.++.+++..+|+++..++++...- ++. .+ .
T Consensus 203 ~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s~~~~-~e~--------~~---------y 264 (456)
T PRK04173 203 RNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGIDPENLRFREHLP-EEL--------AH---------Y 264 (456)
T ss_pred CCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCCccceEEEecCc-chh--------hc---------c
Confidence 445 999999999999998765432 4667788899999999766677765320 000 00 0
Q ss_pred hHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEE
Q psy17091 1006 CEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWT 1085 (1250)
Q Consensus 1006 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~ 1085 (1250)
.. ...+. ..+ ++ .|.-|...
T Consensus 265 s~-----------------------------~~wd~-------------e~~---------~~---------~g~~~~e~ 284 (456)
T PRK04173 265 SK-----------------------------ATWDI-------------EYK---------FP---------FGRFWGEL 284 (456)
T ss_pred HH-----------------------------HHHhH-------------HHh---------CC---------CCCcEEEE
Confidence 00 00000 000 00 01111000
Q ss_pred ECCCCCCcceeecccchHHHH--hcCCC-------------CCCeE-EEEEeHHHHHHHHHHcc---------------C
Q psy17091 1086 TDKLGSQNSICGGGRYDFLIK--KFSNK-------------FVPAS-GFAIGIERLIELIKKIN---------------I 1134 (1250)
Q Consensus 1086 ~~~~~~~~~i~~GGRYD~L~~--~fg~~-------------~~pav-Gfsi~lerl~~~l~~~~---------------~ 1134 (1250)
..+++||+|| |.. .|++. ..|.+ ++|+|+||++.++.+.+ .
T Consensus 285 -------~g~~~~~dyd-L~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~siGieRl~~ail~~~~~~~~~~~~~~r~~l~ 356 (456)
T PRK04173 285 -------EGIANRTDYD-LSRHSKHSGEDLSYFDDETTGEKYIPYVIEPSAGLDRLLLAFLEDAYTEEELGGGDKRTVLR 356 (456)
T ss_pred -------eeeeccchhh-cccchhhcCCCeEEEecCCCCceeeeEEEEecccHHHHHHHHHHHHcccccccCCcceeEEE
Confidence 1355677777 443 22211 13544 99999999766665432 5
Q ss_pred CCCCCCCceEEEEEcCh--HHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeE
Q psy17091 1135 NHNFSHQCDIYIVHVGK--EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTL 1212 (1250)
Q Consensus 1135 ~~~~~~~~~v~V~~~~~--~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v 1212 (1250)
||.|.+|.+|+|++.++ +...+|.+++++||++ ++|++|.. .++++++++|++.|+||+||||++|+++|+|
T Consensus 357 ~P~~lAP~qV~Iipi~~~~e~~~~A~~la~~LR~~-irVelD~~-----~slgkkir~A~~~Gip~~IIIG~~El~~g~V 430 (456)
T PRK04173 357 LPPALAPVKVAVLPLVKKEKLSEKAREIYAELRKD-FNVDYDDS-----GSIGKRYRRQDEIGTPFCITVDFDTLEDNTV 430 (456)
T ss_pred CCCcCCCCEEEEEEecCcHHHHHHHHHHHHHHHhc-CEEEEeCC-----CCHHHHHHHHHHcCCCEEEEECCchhhCCEE
Confidence 89999999999999987 4778999999999999 99999843 5899999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCcceeeehHHHHHHHHHH
Q psy17091 1213 IIKDLRNKYEDPTLKQISISFKDAENYFYKK 1243 (1250)
Q Consensus 1213 ~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~ 1243 (1250)
+||++.++ ++..++++++++.+++.
T Consensus 431 tvR~r~t~------eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 431 TIRDRDTM------EQVRVKIDELKDYLAEK 455 (456)
T ss_pred EEEECCCC------ceEEEeHHHHHHHHHhh
Confidence 99999999 99999999999888653
No 73
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=99.93 E-value=1.7e-26 Score=227.82 Aligned_cols=126 Identities=32% Similarity=0.505 Sum_probs=118.7
Q ss_pred hhhcccccccc-chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHHHH
Q psy17091 424 RTFSLIDALEK-NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAIKK 502 (1250)
Q Consensus 424 ~t~~li~~~~~-~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav~~ 502 (1250)
+||+++++... .++|+|++.|.++||.|+++||++||+++|++||++|.++|||++|++||+|||+++|+|.|+|||++
T Consensus 2 ~Tl~iIKPdav~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av~~ 81 (132)
T cd04416 2 YTLALIKPDAVAEKKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAVEE 81 (132)
T ss_pred eEEEEEChHHHHHHHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHHHH
Confidence 68899977753 37899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCcccc---ccCCccchhhcchhhhhhhhcCChhHHHHHHHHH
Q psy17091 503 HRILIGDTDPIKA---AKGTIRADFAESIDKNIVHELGEMPFRAKQLQKW 549 (1250)
Q Consensus 503 ~r~l~G~~~~~~a---~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w 549 (1250)
||++||||||..| .|+|||++||.+.++|++|+++.+....++|--|
T Consensus 82 ~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~~f 131 (132)
T cd04416 82 WRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFF 131 (132)
T ss_pred HHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHHHHHHHh
Confidence 9999999999988 8999999999999999999999998888887554
No 74
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=99.93 E-value=3.7e-26 Score=226.29 Aligned_cols=126 Identities=38% Similarity=0.638 Sum_probs=118.8
Q ss_pred hhhccccccccc--hhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHHH
Q psy17091 424 RTFSLIDALEKN--IVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAIK 501 (1250)
Q Consensus 424 ~t~~li~~~~~~--~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav~ 501 (1250)
+|++++++.... ++|+|++.|+++||.|+++||++||+++|++||++|.++|||+.|+++|+|||+++|+|.|+|||+
T Consensus 2 ~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av~ 81 (133)
T cd00595 2 RTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAVG 81 (133)
T ss_pred cEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChHH
Confidence 688999777644 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCcccc---ccCCccchhhcchhhhhhhhcCChhHHHHHHHHH
Q psy17091 502 KHRILIGDTDPIKA---AKGTIRADFAESIDKNIVHELGEMPFRAKQLQKW 549 (1250)
Q Consensus 502 ~~r~l~G~~~~~~a---~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w 549 (1250)
+||++|||+||..| .|+|||++||.+.++|++|+++.+....++|--|
T Consensus 82 ~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei~~~ 132 (133)
T cd00595 82 EWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFF 132 (133)
T ss_pred HHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHHHHHHhh
Confidence 99999999999977 7999999999999999999999998888887655
No 75
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=4.5e-25 Score=221.70 Aligned_cols=156 Identities=26% Similarity=0.381 Sum_probs=125.5
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
++|+++|.||||||||+|+|+|.+ ..++++||+|.+...+.+.+.+..+.++||||+.+..... .++......+ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s--~ee~v~~~~l-~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS--EEERVARDYL-LS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS--HHHHHHHHHH-HH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC--cHHHHHHHHH-hh
Confidence 589999999999999999999988 6678999999999999999999999999999997754321 2222222222 24
Q ss_pred ccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChH
Q psy17091 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~ 342 (1250)
...|++++|+|+++. +++..++.++.+.++|+++|+||+|+..+.......+.+.+.++ +|++++||++|+|++
T Consensus 77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg----~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG----VPVIPVSARTGEGID 150 (156)
T ss_dssp TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT----S-EEEEBTTTTBTHH
T ss_pred cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC----CCEEEEEeCCCcCHH
Confidence 789999999999985 88899999999999999999999999876655555677777775 799999999999999
Q ss_pred HHHHHH
Q psy17091 343 SFMESI 348 (1250)
Q Consensus 343 ~l~~~i 348 (1250)
+|+++|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
No 76
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.4e-24 Score=256.32 Aligned_cols=339 Identities=17% Similarity=0.218 Sum_probs=249.8
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC-CCCe
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGPK 915 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~ 915 (1250)
-++..+..+|+. .|.+|...+.+.+- .++|++.+.++||.+... ++.++|||+.|+.++.++.+..+++ .+|+
T Consensus 229 y~~~~~~~~Gy~-~V~TP~~~~~~l~~---~SGH~~~y~e~mf~~~~~--~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~ 302 (589)
T COG0441 229 YVRTKLRSYGYQ-EVKTPVLADLELWE---LSGHWDNYKEDMFLTESD--DREYALKPMNCPGHILIFKSGLRSYRELPL 302 (589)
T ss_pred HHHHHHHhcCce-EecCCeeeecccch---hccchhhccccceeeccC--ChhheeeeccCHhHHHHHhcCCcceeccch
Confidence 355666788999 79999999999886 789999999999998763 5899999999999999999988888 6999
Q ss_pred eEEEEeceeecCCCCC--C--CCCceEEeeEEEecCCCchhc--hHHHHHHHHHHHHCCCCceEEEeCCCc-Chh---hH
Q psy17091 916 RLWYSGPMFRHERPQY--G--RYRQFYQIGVEAIGFPGPDID--AELIIMCSRLWKNLNLKNICLELNSIG-NFN---ER 985 (1250)
Q Consensus 916 r~yy~g~VfR~e~~~~--g--r~REf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~lgl~~~~i~i~~~~-i~~---~~ 985 (1250)
|++.+|.|||+|.++. | |.|.|+|.|++||+..++..| .+++.++.++++.||+++|.+.++.+. .+. .|
T Consensus 303 r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~k~ig~d~~W 382 (589)
T COG0441 303 RLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRPKFIGSDEMW 382 (589)
T ss_pred hhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCcccCChhhh
Confidence 9999999999998865 5 999999999999999554443 578888999999999988999998875 111 11
Q ss_pred HHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceEE
Q psy17091 986 KKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYK 1065 (1250)
Q Consensus 986 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~ 1065 (1250)
......+.+.++.....- ........+..+. ++.-...++.+-.+ . -.|+
T Consensus 383 ~~a~~~l~~al~~~~~~~--~~~~G~~aFyGPK--------------------id~~v~Dalgr~~q-------~-~TIQ 432 (589)
T COG0441 383 DKAEAALREALKEIGVEY--VEEPGEGAFYGPK--------------------IDFQVKDALGREWQ-------L-GTIQ 432 (589)
T ss_pred HHHHHHHHHHHHhhCcee--eecCCceEEECcc--------------------cceEEEeccCccee-------c-ceEE
Confidence 111122222222221110 0000000000000 00000000000000 0 1344
Q ss_pred EeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCC---eEEEEEeHHHHHHHHHH--ccCCCCCCC
Q psy17091 1066 INTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVP---ASGFAIGIERLIELIKK--ININHNFSH 1140 (1250)
Q Consensus 1066 ~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~p---avGfsi~lerl~~~l~~--~~~~~~~~~ 1140 (1250)
+|+.+...+ .+.. +..-+....| +++....+||.+.+|.+ .|.+|.|.+
T Consensus 433 lDf~lpeRF--------~l~Y------------------v~~d~~~~~PvmiHrai~GSiERfi~iLiE~~~G~~P~WLa 486 (589)
T COG0441 433 LDFNLPERF--------DLEY------------------VDEDGEKKRPVIIHRAILGSIERFIGILLEHYAGALPTWLA 486 (589)
T ss_pred EecCChhhc--------eEEE------------------EcCCCCccCCEEEEeccchhHHHHHHHHHHhccCCCcccCC
Confidence 555443222 1111 1111112234 45888899999999998 578999999
Q ss_pred CceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCC
Q psy17091 1141 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNK 1220 (1250)
Q Consensus 1141 ~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~ 1220 (1250)
|.||.|++++++...+|.++++.|+++||+|++|++ +++++++++.|...++||++|||++|++++.|.||.+.+.
T Consensus 487 PvQv~VipV~~~~~~ya~~v~~~L~~~giRvdvD~~----~e~l~kKIR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~ 562 (589)
T COG0441 487 PVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDR----NEKLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRRRGGK 562 (589)
T ss_pred ccEEEEEEeChHHHHHHHHHHHHHHHcCCeeeeccc----ccchHHHHHHHHhcCCCEEEEEchhhhccCceEEEEccCC
Confidence 999999999999999999999999999999999987 7899999999999999999999999999999999999998
Q ss_pred CCCCCCcceeeehHHHHHHHHHHHHhh
Q psy17091 1221 YEDPTLKQISISFKDAENYFYKKIIKN 1247 (1250)
Q Consensus 1221 ~~~~~~~e~~v~~~el~~~l~~~i~~~ 1247 (1250)
+...++++++++.+++++.++
T Consensus 563 ------~~~~~~l~e~i~~ik~e~~~~ 583 (589)
T COG0441 563 ------QQKSMTLEELVEELKKEIEGR 583 (589)
T ss_pred ------ccccccHHHHHHHHHHHhhcc
Confidence 777799999999999998654
No 77
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.92 E-value=2.2e-24 Score=258.28 Aligned_cols=335 Identities=14% Similarity=0.128 Sum_probs=231.9
Q ss_pred eEeeeccCCCCCCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccC-
Q psy17091 813 KINLIPFNCFPNSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELN- 886 (1250)
Q Consensus 813 ~vnlip~n~~~~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~- 886 (1250)
+-+||-+-|..|..+..|....+ ..+.+.++++|+. .|.+|.....+.+-+ .+++++.+.++||.+.|. +
T Consensus 18 ~~~li~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~-ev~~P~l~~~~~~~~--~~~h~~~f~~e~f~v~~~-g~ 93 (472)
T TIGR00408 18 KAEIIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHE-EVYFPMLIPESELAK--EKDHIKGFEPEVYWITHG-GL 93 (472)
T ss_pred HcCCccccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCE-EEECCccCCHHHHHh--hcchhhhcchhcEEEecC-CC
Confidence 44566565666665555554433 2356677789999 799999999888753 256777888999999997 5
Q ss_pred ---CcccccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCCC---CCCCCceEEeeEEEecCCCchhch---HH
Q psy17091 887 ---GDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQ---YGRYRQFYQIGVEAIGFPGPDIDA---EL 956 (1250)
Q Consensus 887 ---g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~---~gr~REf~Q~g~eiig~~~~~ada---Ev 956 (1250)
++.++|||+.|++++.++++...++ ++|+|+|++++|||+|.++ .+|.|||+|.+.|.+..+...++. ++
T Consensus 94 ~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~ 173 (472)
T TIGR00408 94 SKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRA 173 (472)
T ss_pred CccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHH
Confidence 4899999999999999888766555 8999999999999999663 359999999999976655555554 45
Q ss_pred HHHHHHHHH-HCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhh
Q psy17091 957 IIMCSRLWK-NLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINA 1035 (1250)
Q Consensus 957 i~l~~~~l~-~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 1035 (1250)
+.++.++++ .||++ +.+...... ++.. ....
T Consensus 174 l~~y~~i~~~~lglp-~~~~~~~~~----------------ek~~---------------ga~~---------------- 205 (472)
T TIGR00408 174 LDIYKEFIENSLAIP-YFVGRKPEW----------------EKFA---------------GAEY---------------- 205 (472)
T ss_pred HHHHHHHHHhccCCe-EEEEecCch----------------hhcC---------------Cccc----------------
Confidence 666778997 89994 333221100 0000 0000
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCe
Q psy17091 1036 PKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPA 1115 (1250)
Q Consensus 1036 ~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pa 1115 (1250)
.+.++..+..+...-.|.+|.. |...+-.-+=+|.+ .-|....+.
T Consensus 206 ---------------------------~~~~e~~~~dgr~~q~~t~~~L-----g~~~sk~f~i~y~~---~~g~~~~~h 250 (472)
T TIGR00408 206 ---------------------------TWAFETIMPDGRTLQIATSHNL-----GQNFAKTFEIKFET---PTGDKEYAY 250 (472)
T ss_pred ---------------------------eEEEeEEEcCCCEEEEeeeecc-----cccccHhcCCEEEC---CCCCEEeeE
Confidence 0000000000000001111100 10000011111110 001111233
Q ss_pred EEEEEeH-HHHHHHHHH-----cc-CCCCCCCCceEEEEEc--C----hHHHHHHHHHHHHHHHcCCEEEEeeccccccc
Q psy17091 1116 SGFAIGI-ERLIELIKK-----IN-INHNFSHQCDIYIVHV--G----KEAELKAFVLSENLRTLGLKVILNCVFNNIHE 1182 (1250)
Q Consensus 1116 vGfsi~l-erl~~~l~~-----~~-~~~~~~~~~~v~V~~~--~----~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~ 1182 (1250)
. +++|+ +|++.+|.+ .| .+|.+.+|.+|+|+++ + ++...+|.++++.||+.|++|++|++ +.
T Consensus 251 ~-~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r----~~ 325 (472)
T TIGR00408 251 Q-TSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDR----DN 325 (472)
T ss_pred E-ccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC----CC
Confidence 3 66777 999999965 33 5899999999999997 3 35778999999999999999999987 56
Q ss_pred cHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHH
Q psy17091 1183 SFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 1245 (1250)
Q Consensus 1183 s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~ 1245 (1250)
++++++++|++.|+|++|+||++|+++|+|+||+|.++ ++..++++++++.+.+.+.
T Consensus 326 s~gkk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~------eq~~v~l~el~~~l~~~l~ 382 (472)
T TIGR00408 326 RPGRKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTG------EKYQVSLDQLEERVVELLN 382 (472)
T ss_pred CHHHHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCC------ceEEEEHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 8999999999998877663
No 78
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.92 E-value=1.5e-24 Score=256.36 Aligned_cols=203 Identities=19% Similarity=0.369 Sum_probs=164.9
Q ss_pred eeeeecccCCcccccccccC-------CCCc-ccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCccC
Q psy17091 617 TLCISTQVGCAINCIFCSTG-------RQGF-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 688 (1250)
Q Consensus 617 t~c~ssq~GC~~~C~fC~t~-------~~~~-~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GEpl 688 (1250)
-+-++--.||+++|.||.+. +.|. .++||++|+++++..+...+ ..+++|+||||||||
T Consensus 25 r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~-------------~~~~~V~iaG~GEPL 91 (442)
T TIGR01290 25 RMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEI-------------PQLSVVGIAGPGDPL 91 (442)
T ss_pred EEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhc-------------CCCCEEEEecCCCcc
Confidence 34566668999999999974 2343 47899999999999887654 246889999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCceEEEEecCch--hHHHHhhhh-CCCeEEEEccCCChhhhhccCCC----CCCC---
Q psy17091 689 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGII--PMIDKLAQE-CPVELAVSLHASNNNLRNKLVPI----SKKY--- 758 (1250)
Q Consensus 689 ~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~--~~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~----~~~~--- 758 (1250)
+|++++++.++.+++. +++.+++|||||+. +.+++|++. ++ .+.+|||++|++.|++|+|. ++.|
T Consensus 92 l~~e~~~~~l~~~~~~----~~~i~i~lsTNG~~l~e~i~~L~~~gvd-~V~islka~d~e~~~~Iy~~v~~~g~~~tG~ 166 (442)
T TIGR01290 92 ANIGKTFQTLELVARQ----LPDVKLCLSTNGLMLPEHVDRLVDLGVG-HVTITINAIDPAVGEKIYPWVWYEGERYTGR 166 (442)
T ss_pred cCccccHHHHHHHHHh----cCCCeEEEECCCCCCHHHHHHHHHCCCC-eEEEeccCCCHHHHhhcchhhccccccccCc
Confidence 9999999999999986 34689999999974 557887776 56 47799999999999999885 2333
Q ss_pred CH-----HHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccc-eeEeeeccCCCC--CCCC---
Q psy17091 759 PL-----KELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTS-CKINLIPFNCFP--NSNL--- 827 (1250)
Q Consensus 759 ~~-----~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~-~~vnlip~n~~~--~~~~--- 827 (1250)
+. +..+++++...+ .+ ..++++|+||||+|| +++.+++++++. +. ..+|++||||.+ +..|
T Consensus 167 ~~~~il~e~~l~~l~~l~~-~G-~~v~v~~vlIpGiND--~~i~~l~~~~~~----lg~~~~nl~p~~~~p~~G~~~~~~ 238 (442)
T TIGR01290 167 EAADLLIERQLEGLEKLTE-RG-ILVKVNSVLIPGIND--EHLVEVSKQVKE----LGAFLHNVMPLISAPEHGTVYGLN 238 (442)
T ss_pred chHHHHHHHHHHHHHHHHh-CC-CeEEEEEEeeCCcCH--HHHHHHHHHHHh----CCCcEEEeecCCCccccCCccCcC
Confidence 33 445688876654 34 589999999999999 799999999998 54 469999999887 5555
Q ss_pred --CCCcHHHHHHHHHHHHhC
Q psy17091 828 --ICSKNSRIKIFAKILMNS 845 (1250)
Q Consensus 828 --~~p~~e~i~~f~~iL~~~ 845 (1250)
++|+.+.++.|++.++..
T Consensus 239 ~~~~ps~e~l~~~~~~~~~~ 258 (442)
T TIGR01290 239 GQREPDPDELAALRDRLEMG 258 (442)
T ss_pred CCCCcCHHHHHHHHHHHHhh
Confidence 789999999999998753
No 79
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.92 E-value=1.2e-24 Score=231.95 Aligned_cols=184 Identities=15% Similarity=0.228 Sum_probs=158.1
Q ss_pred CcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEe
Q psy17091 639 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILST 718 (1250)
Q Consensus 639 ~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT 718 (1250)
...+.+|++|+++++...+.+++ .|+|| |+|.| |||++|++|+.++++.+++. +.|++++|
T Consensus 14 ~~g~~~t~eel~~~~~~~~~f~~-------~sggG-----Vt~SG-GEPllq~~fl~~l~~~~k~~------gi~~~leT 74 (213)
T PRK10076 14 RIGRDITLDALEREVMKDDIFFR-------TSGGG-----VTLSG-GEVLMQAEFATRFLQRLRLW------GVSCAIET 74 (213)
T ss_pred hcCcccCHHHHHHHHHhhhHhhc-------CCCCE-----EEEeC-chHHcCHHHHHHHHHHHHHc------CCCEEEEC
Confidence 34577999999999999999885 23444 88888 99999999999999999987 78999999
Q ss_pred cCchhH--HHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHH
Q psy17091 719 SGIIPM--IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHA 796 (1250)
Q Consensus 719 ~g~~~~--i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~ 796 (1250)
||..|. ++++++.++..+ +|||++|++.|+++ ++.+++.++++++...+ .+ .++++|+++|||+||+++++
T Consensus 75 nG~~~~~~~~~l~~~~D~~l-~DiK~~d~~~~~~~----tG~~~~~il~nl~~l~~-~g-~~v~iR~~vIPg~nd~~e~i 147 (213)
T PRK10076 75 AGDAPASKLLPLAKLCDEVL-FDLKIMDATQARDV----VKMNLPRVLENLRLLVS-EG-VNVIPRLPLIPGFTLSRENM 147 (213)
T ss_pred CCCCCHHHHHHHHHhcCEEE-EeeccCCHHHHHHH----HCCCHHHHHHHHHHHHh-CC-CcEEEEEEEECCCCCCHHHH
Confidence 998864 777888888867 89999999999999 56778999999986654 44 48999999999999999999
Q ss_pred HHHHHHhhcCCCccceeEeeeccCCCCCCCC------------CCCcHHHHHHHHHHHHhCCCeEEE
Q psy17091 797 IELISLMRKNKILTSCKINLIPFNCFPNSNL------------ICSKNSRIKIFAKILMNSGIFVTI 851 (1250)
Q Consensus 797 ~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~------------~~p~~e~i~~f~~iL~~~G~~~~i 851 (1250)
+++|+|+++.+ ...++|+||||.+..+| .+|+.+.+++++++++++|++++|
T Consensus 148 ~~ia~~l~~l~---~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 148 QQALDVLIPLG---IKQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHcC---CceEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 99999999832 13899999999765443 478999999999999999999865
No 80
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=2.1e-24 Score=231.46 Aligned_cols=177 Identities=27% Similarity=0.399 Sum_probs=154.8
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.--|+|+|+||||||||+|+|+|.+.+++|+.|.|||..+.+.+..++.+++++||||+.... ..+.+++...+..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk---~~l~~~m~~~a~~ 81 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK---HALGELMNKAARS 81 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc---hHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999999999999999999999999999997763 5578888888999
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccc-hHHHHHHHHHHhccCCCCeEEEeecCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ-RKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~iv~iSA~~g~ 339 (1250)
++..+|+++||+|++++++..|..+++.+.+.+.|+++++||+|.+.... .....+.+..... +..++++||++|.
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~---f~~ivpiSA~~g~ 158 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLP---FKEIVPISALKGD 158 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCC---cceEEEeeccccC
Confidence 99999999999999999999999999999997899999999999987655 3444444444444 5689999999999
Q ss_pred ChHHHHHHHHHHHhhcccccChhH
Q psy17091 340 NINSFMESINHVYDSSIIHLSTSR 363 (1250)
Q Consensus 340 gv~~l~~~i~~~~~~~~~~~~~~~ 363 (1250)
|++.|.+.+.+.+++....+|...
T Consensus 159 n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred CHHHHHHHHHHhCCCCCCcCChhh
Confidence 999999999999888776655443
No 81
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=2.6e-24 Score=230.79 Aligned_cols=163 Identities=31% Similarity=0.471 Sum_probs=148.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
.|++||+||||||||+|+|+|++.+++++.|.|||....+.+..++.++.++||||+... ...+.+.+.+.+..++.++
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p-k~~l~~~m~~~a~~sl~dv 86 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP-KHALGELMNKAARSALKDV 86 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc-chHHHHHHHHHHHHHhccC
Confidence 599999999999999999999999999999999999999999999999999999999766 3678888999999999999
Q ss_pred CEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCcc-c---hhHH--hcCCCCcEecccccCCchhHHHHH
Q psy17091 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI-S---LDFY--ELGIGNPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~-~---~~~~--~~~~~~~~~iSA~~g~gi~~L~~~ 157 (1250)
|+++||+|+.+++...+..+.+.+++.+.|+++++||+|...... . .+++ ...+.+++++||++|.|++.|.+.
T Consensus 87 Dlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~ 166 (298)
T COG1159 87 DLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEI 166 (298)
T ss_pred cEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHH
Confidence 999999999999999999999999987789999999999987776 2 3333 456678999999999999999999
Q ss_pred HHHhhCCccc
Q psy17091 158 ILTIELPYKK 167 (1250)
Q Consensus 158 i~~~l~~~~~ 167 (1250)
+...+++++.
T Consensus 167 i~~~Lpeg~~ 176 (298)
T COG1159 167 IKEYLPEGPW 176 (298)
T ss_pred HHHhCCCCCC
Confidence 9999998764
No 82
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=99.92 E-value=4.2e-25 Score=224.48 Aligned_cols=129 Identities=35% Similarity=0.594 Sum_probs=119.6
Q ss_pred HHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhh-----------------------------
Q psy17091 422 FYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSI----------------------------- 470 (1250)
Q Consensus 422 ~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~----------------------------- 470 (1250)
.++||++|++.. ++++|+|+.+|++.||.|+++||+++|+++|++||++
T Consensus 3 ~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 82 (183)
T PRK14544 3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLGT 82 (183)
T ss_pred cceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccccccccc
Confidence 357999997765 4789999999999999999999999999999999994
Q ss_pred ----ccCCcChHHHHHHHhcCCEEEEEEccccHHHHHHhhhCCCCccccccCCccchhhcch----------hhhhhhhc
Q psy17091 471 ----HKNRPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESI----------DKNIVHEL 536 (1250)
Q Consensus 471 ----~~~~~~~~~l~~~~~sgp~v~~~l~g~nav~~~r~l~G~~~~~~a~p~siR~~~g~~~----------~~n~~~~~ 536 (1250)
|.|++||+.|++||+||||+||+|.|+|||++||++||||+|..|.|+|||++||.+. ++|++|++
T Consensus 83 ~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~~~~~~~~~~~~~~NavH~S 162 (183)
T PRK14544 83 DDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYNLVHAS 162 (183)
T ss_pred ccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhcccccccccccccceeeEEECC
Confidence 4789999999999999999999999999999999999999999999999999999884 79999999
Q ss_pred CChhHHHHHHHHHH
Q psy17091 537 GEMPFRAKQLQKWI 550 (1250)
Q Consensus 537 g~~~~ra~qi~~w~ 550 (1250)
+.+....++|--|.
T Consensus 163 ds~e~A~rEi~~fF 176 (183)
T PRK14544 163 DSPEEAEREIKFWF 176 (183)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999888887774
No 83
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.91 E-value=3.9e-24 Score=242.59 Aligned_cols=163 Identities=34% Similarity=0.530 Sum_probs=144.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
..++++|+|+||||||||+|+|++.++++|++.||||||.++..+..+|.++.|+||+|++... +.+|+..+.++..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~---d~VE~iGIeRs~~ 292 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD---DVVERIGIERAKK 292 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc---cHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999998654 7789999999999
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
.+..||.+++|+|++++.+.+|..++. ....++|+++|+||.|+.++...... ......+++.+||++|.|
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE--------KLANGDAIISISAKTGEG 363 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh--------hccCCCceEEEEecCccC
Confidence 999999999999999998999999888 66678999999999999876542111 112234799999999999
Q ss_pred hHHHHHHHHHHHhhc
Q psy17091 341 INSFMESINHVYDSS 355 (1250)
Q Consensus 341 v~~l~~~i~~~~~~~ 355 (1250)
++.|.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998887654
No 84
>KOG0888|consensus
Probab=99.91 E-value=2.6e-25 Score=217.42 Aligned_cols=131 Identities=38% Similarity=0.674 Sum_probs=123.8
Q ss_pred HHhhhcccccc--ccchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccH
Q psy17091 422 FYRTFSLIDAL--EKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDA 499 (1250)
Q Consensus 422 ~r~t~~li~~~--~~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~na 499 (1250)
.++||.++++. .++++++++.+++++||+|+++|+++++++++++||.+|+++|||+.||.||+|||++||+|.|.||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 56899999554 4788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCcccc---ccCCccchhhcchhhhhhhhcCChhHHHHHHHHHHHh
Q psy17091 500 IKKHRILIGDTDPIKA---AKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWIHK 552 (1250)
Q Consensus 500 v~~~r~l~G~~~~~~a---~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~~~ 552 (1250)
|++||+++|||+|..| +|+||||+||.+..+|.+|+++......+.|--|.-.
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~~~F~~ 140 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIKLWFPE 140 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHHHHHHhcCch
Confidence 9999999999999998 8999999999999999999999999999999988643
No 85
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=99.91 E-value=8.6e-25 Score=217.98 Aligned_cols=127 Identities=39% Similarity=0.649 Sum_probs=113.1
Q ss_pred hhhcccccccc--chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHHH
Q psy17091 424 RTFSLIDALEK--NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAIK 501 (1250)
Q Consensus 424 ~t~~li~~~~~--~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav~ 501 (1250)
+||.++++..- +++|+|++.+.++||.|+++||+++|+++|++||+.|.++++|+.+++||+|||+++|+|.|+|||+
T Consensus 2 ~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av~ 81 (135)
T PF00334_consen 2 RTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAVE 81 (135)
T ss_dssp EEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHH
T ss_pred eEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhhH
Confidence 57888866654 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 502 KHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 502 ~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+||+++||+||..|+|+|||++||.+..+|++|+++.+.-..+++--|.
T Consensus 82 ~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~~~F 130 (135)
T PF00334_consen 82 KWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGSDSPEDAEREIAFFF 130 (135)
T ss_dssp HHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-SSHHHHHHHHHHHS
T ss_pred HHHHhcCCcchhhhccccchhceeecCCCCeEECCCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999988887774
No 86
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=99.91 E-value=1.1e-24 Score=217.08 Aligned_cols=127 Identities=44% Similarity=0.738 Sum_probs=119.6
Q ss_pred hhhcccccccc--chhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHHH
Q psy17091 424 RTFSLIDALEK--NIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAIK 501 (1250)
Q Consensus 424 ~t~~li~~~~~--~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav~ 501 (1250)
++++++++... .++|+|++.|.++||.|+++||++||+++|++||++|.|++||+.|+++|+|||+++|+|.|+|||+
T Consensus 2 ~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav~ 81 (135)
T smart00562 2 RTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAVK 81 (135)
T ss_pred eEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHHH
Confidence 68889977664 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 502 KHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 502 ~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+||++|||++|..++|+|||++||.+.++|++|+++.+....+++--|.
T Consensus 82 ~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~~~F 130 (135)
T smart00562 82 TWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPESAEREIALFF 130 (135)
T ss_pred HHHHHhCCCChhhcCCcchHHhhcccccceeEECCCCHHHHHHHHHHcC
Confidence 9999999999988899999999999999999999999988888776553
No 87
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=1e-23 Score=238.62 Aligned_cols=162 Identities=33% Similarity=0.491 Sum_probs=141.5
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
..|+|+|+||||||||+|+|+|...++++++||+|||.+....+|.+..+.+|||+|+.... .+.++.....+++.++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD--EDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC--chHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999997543 2356667778899999
Q ss_pred ccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChH
Q psy17091 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~ 342 (1250)
..||+++||+|+..|+++.|..+.++++..++|+++|+||+|-.+.. .....+-.+++..++++||.+|.|+.
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e-------~~~~efyslG~g~~~~ISA~Hg~Gi~ 154 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE-------ELAYEFYSLGFGEPVPISAEHGRGIG 154 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh-------hhHHHHHhcCCCCceEeehhhccCHH
Confidence 99999999999999999999999999998889999999999975221 11122233556789999999999999
Q ss_pred HHHHHHHHHHh
Q psy17091 343 SFMESINHVYD 353 (1250)
Q Consensus 343 ~l~~~i~~~~~ 353 (1250)
+|++++.+.++
T Consensus 155 dLld~v~~~l~ 165 (444)
T COG1160 155 DLLDAVLELLP 165 (444)
T ss_pred HHHHHHHhhcC
Confidence 99999999874
No 88
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.91 E-value=1.4e-22 Score=243.52 Aligned_cols=327 Identities=15% Similarity=0.101 Sum_probs=222.3
Q ss_pred CCCCCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccC----Ccccc
Q psy17091 821 CFPNSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELN----GDNLS 891 (1250)
Q Consensus 821 ~~~~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~----g~~l~ 891 (1250)
+..|..+-.|....+ +.+.+.++++|+. .|.+|.....+.+.- .+++++.+.++||.+.|. + ++.++
T Consensus 32 ~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~-ev~~P~l~~~~~~~~--~~~h~~~f~~e~~~v~~~-~~~~~~e~l~ 107 (477)
T PRK08661 32 PVKGCMVIKPYGYAIWENIQKILDKLFKETGHE-NVYFPLLIPESLLEK--EKEHVEGFAPEVAWVTHG-GGEKLEEKLA 107 (477)
T ss_pred CCCceEEECccHHHHHHHHHHHHHHHHHHcCCE-EEECCccCCHHHHhh--hcCchhhcccccEEEEcc-CCCccCceEE
Confidence 344544445554333 3467777889999 799999999988741 156677778999999986 5 46799
Q ss_pred cCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCCCC--CCCCceEEeeEEEecCCCchhch---HHHHHHHHHH-
Q psy17091 892 LRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQY--GRYRQFYQIGVEAIGFPGPDIDA---ELIIMCSRLW- 964 (1250)
Q Consensus 892 LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~~--gr~REf~Q~g~eiig~~~~~ada---Evi~l~~~~l- 964 (1250)
|||+.++.+.-++++...++ ++|+|+|++++|||+|.+.. .|.|||+|.+.|++..+..+++. +++.+..+++
T Consensus 108 LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~ 187 (477)
T PRK08661 108 LRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFE 187 (477)
T ss_pred EecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999555555444433333 69999999999999996654 59999999999998776666654 4556677889
Q ss_pred HHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHH
Q psy17091 965 KNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEK 1044 (1250)
Q Consensus 965 ~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 1044 (1250)
+.||++ +.+..... . ++. .....
T Consensus 188 ~~Lglp-~~~~~~~~-----~-----------ekf---------------~ga~~------------------------- 210 (477)
T PRK08661 188 DYLAIP-VIIGKKTE-----W-----------EKF---------------AGADY------------------------- 210 (477)
T ss_pred HhcCCe-EEEEecCh-----H-----------Hhh---------------CCCcc-------------------------
Confidence 889884 32221110 0 000 00000
Q ss_pred hHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeH-H
Q psy17091 1045 DSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGI-E 1123 (1250)
Q Consensus 1045 ~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~l-e 1123 (1250)
.+.+|..+..|...-.|.+|+. +...+-..+=+|.+ .-|....+..+ +.|+ +
T Consensus 211 ------------------~~~ie~~~~dgr~~q~gt~~~L-----g~~~s~~f~i~y~d---~~g~~~~v~~~-s~G~~~ 263 (477)
T PRK08661 211 ------------------TYTIEAMMPDGKALQAGTSHYL-----GQNFAKAFDIKFQD---KDGKLEYVHQT-SWGVST 263 (477)
T ss_pred ------------------eeEEEEEeCCCCEEEEEEeccc-----ccchhHhcCCEEEC---CCCCEeeeEEe-cccHHH
Confidence 0011111111111111222111 11001111122210 11112223333 4444 9
Q ss_pred HHHHHHHH-----cc-CCCCCCCCceEEEEEc------ChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHH
Q psy17091 1124 RLIELIKK-----IN-INHNFSHQCDIYIVHV------GKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRA 1191 (1250)
Q Consensus 1124 rl~~~l~~-----~~-~~~~~~~~~~v~V~~~------~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A 1191 (1250)
|++.++.+ .| .+|.+.+|.+|+|+++ +++...+|.++++.||++|++|++|++ .+.++++++++|
T Consensus 264 R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r---~~~s~gkK~~~a 340 (477)
T PRK08661 264 RLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDR---SDKTPGWKFNEW 340 (477)
T ss_pred HHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECC---CCCCHHHHHHHH
Confidence 99999987 23 5888999999999999 566788999999999999999999973 157999999999
Q ss_pred HHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHH
Q psy17091 1192 NASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 1244 (1250)
Q Consensus 1192 ~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i 1244 (1250)
++.|+|++|+||++|+++|+|+||+++++ ++..|+++++++.+.+.+
T Consensus 341 e~~GvP~~IiIG~~ele~~~V~ik~rdtg------ek~~v~~~el~~~l~~~l 387 (477)
T PRK08661 341 ELKGVPLRIEIGPRDLENNTVVLVRRDTL------EKETVPLDELVEKVPELL 387 (477)
T ss_pred HHCCCCEEEEECcchhhcCeEEEEECCCC------ceEEEEHHHHHHHHHHHH
Confidence 99999999999999999999999999999 899999999999887665
No 89
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=2.5e-23 Score=209.17 Aligned_cols=150 Identities=31% Similarity=0.463 Sum_probs=119.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|+++|+||||||||||+|+|.+ ..++++||+|+++..+.+.+.+..+.++||||+.+.......+++...+.. ....
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 79999999999999999999998 559999999999999999999999999999998765434444455444433 4789
Q ss_pred CEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---h-hHH-hcCCCCcEecccccCCchhHHHHHH
Q psy17091 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---L-DFY-ELGIGNPHIISALYGNGIKNFLENI 158 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~-~~~-~~~~~~~~~iSA~~g~gi~~L~~~i 158 (1250)
|++++|+|++. .+.+..+..++.+.++|+++|+||+|....... . .+. .+|. +++++||+++.|+++|+++|
T Consensus 80 D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~-pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 80 DLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV-PVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp SEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEBTTTTBTHHHHHHHH
T ss_pred CEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC-CEEEEEeCCCcCHHHHHhhC
Confidence 99999999986 455667778888899999999999998765544 2 222 4565 79999999999999999875
No 90
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.9e-22 Score=222.41 Aligned_cols=204 Identities=18% Similarity=0.226 Sum_probs=168.4
Q ss_pred eeeeecccCCcccccccccCCCCc-ccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCccCCCHHHHH
Q psy17091 617 TLCISTQVGCAINCIFCSTGRQGF-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 695 (1250)
Q Consensus 617 t~c~ssq~GC~~~C~fC~t~~~~~-~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GEpl~n~~~v~ 695 (1250)
+..+=+-.||+++|.||||+.... .+..+..|+..+++....... ...++|+|.| |||++|++++.
T Consensus 36 ~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~------------~~~~gvt~SG-GEP~~q~e~~~ 102 (260)
T COG1180 36 IRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYS------------ESGGGVTFSG-GEPTLQAEFAL 102 (260)
T ss_pred EEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhc------------CCCCEEEEEC-CcchhhHHHHH
Confidence 445556689999999999997766 588899999888887766553 3578899999 99999999999
Q ss_pred HHHHHhhcCCCCCCCCceEEEEecCchhH--HHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHHHHhh
Q psy17091 696 GALKLILSDHAYGLSRRHVILSTSGIIPM--IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITY 773 (1250)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~itvsT~g~~~~--i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~~~~~ 773 (1250)
+.++.+++. |.+++++|||+.+. .++|++.+|..+ +|||+.+++.++++ ++.+++.++++++...+
T Consensus 103 ~~~~~ake~------Gl~~~l~TnG~~~~~~~~~l~~~~D~v~-~DlK~~~~~~y~~~----tg~~~~~vl~~~~~l~~- 170 (260)
T COG1180 103 DLLRAAKER------GLHVALDTNGFLPPEALEELLPLLDAVL-LDLKAFDDELYRKL----TGADNEPVLENLELLAD- 170 (260)
T ss_pred HHHHHHHHC------CCcEEEEcCCCCCHHHHHHHHhhcCeEE-EeeccCChHHHHHH----hCCCcHHHHHHHHHHHc-
Confidence 999999998 88999999998754 557777788766 89999999999999 56677999999987765
Q ss_pred CCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCc-HHHHHHHHHHHHhCCCe
Q psy17091 774 SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSK-NSRIKIFAKILMNSGIF 848 (1250)
Q Consensus 774 ~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~-~e~i~~f~~iL~~~G~~ 848 (1250)
.+ ..+++++++|||+||++++++++++|++..+ -...+.++||||....++.+++ .+.++...+..++.|..
T Consensus 171 ~g-~~ve~r~lviPg~~d~~e~i~~i~~~i~~~~--~~~p~~~l~fhp~~~~~~~p~~~~~~le~~~~~a~~~~~~ 243 (260)
T COG1180 171 LG-VHVEIRTLVIPGYNDDEEEIRELAEFIADLG--PEIPIHLLRFHPDYKLKDLPPTPVETLEEAKKLAKEEGLK 243 (260)
T ss_pred CC-CeEEEEEEEECCCCCCHHHHHHHHHHHHhcC--CcccEEEeccccCccccccCCCcHHHHHHhHhhhHHHHHH
Confidence 44 5999999999999999999999999999721 2368999999999988886644 55666677766665443
No 91
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.88 E-value=4.9e-22 Score=225.62 Aligned_cols=160 Identities=29% Similarity=0.382 Sum_probs=137.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+|+|+||||||||+|+|++++.+||.+.||||||..+..+.++|.++.++||+|+-+.. +.+++...+.....+++
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~-d~VE~iGIeRs~~~i~~ 296 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD-DVVERIGIERAKKAIEE 296 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc-cHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999997444 77778888899999999
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccchhHHhcCCC-CcEecccccCCchhHHHHHHHHh
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDFYELGIG-NPHIISALYGNGIKNFLENILTI 161 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~-~~~~iSA~~g~gi~~L~~~i~~~ 161 (1250)
||++|||+|++++.+..+..+.. +...++|+++|.||+|+......... +...+ ..+.+||++|.|+++|.+.+.+.
T Consensus 297 ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~ 374 (454)
T COG0486 297 ADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE-KLANGDAIISISAKTGEGLDALREAIKQL 374 (454)
T ss_pred CCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh-hccCCCceEEEEecCccCHHHHHHHHHHH
Confidence 99999999999987788877776 44568899999999999876554222 22222 57999999999999999999887
Q ss_pred hCCc
Q psy17091 162 ELPY 165 (1250)
Q Consensus 162 l~~~ 165 (1250)
+...
T Consensus 375 ~~~~ 378 (454)
T COG0486 375 FGKG 378 (454)
T ss_pred Hhhc
Confidence 6543
No 92
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.88 E-value=2.3e-21 Score=214.19 Aligned_cols=213 Identities=16% Similarity=0.218 Sum_probs=172.4
Q ss_pred eEEEEEeccCCCceeeeecccCCcccccccccCCC---CcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceee
Q psy17091 604 IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ---GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIV 680 (1250)
Q Consensus 604 ~ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~---~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~iv 680 (1250)
.+|.+-++.+.+...|+.|+ ||+++|.||.++.. ...+.++++|+++++.....++. .....|+
T Consensus 4 ~~~~~~~~~g~g~~~~v~~~-gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~------------~~~~~I~ 70 (235)
T TIGR02493 4 STESMGTVDGPGIRFVVFMQ-GCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFK------------ASGGGVT 70 (235)
T ss_pred EEEeccccCCCCceEEEEEC-CCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHh------------cCCCeEE
Confidence 57888888888889999998 99999999997643 23467999999999887765542 1234699
Q ss_pred ecccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCc----hhHHHHhhhhCCCeEEEEccCCChhhhhccCCCCC
Q psy17091 681 MMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGI----IPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 756 (1250)
Q Consensus 681 fmg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~----~~~i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~ 756 (1250)
|+| ||||++++.+.+.++.+++. +.++++.|+|. .+.+.++.+..+. +.+|+++++++.|+++.
T Consensus 71 ~~G-GEPll~~~~~~~li~~~~~~------g~~~~i~TNG~~~~~~~~~~~ll~~~d~-v~isl~~~~~~~~~~~~---- 138 (235)
T TIGR02493 71 FSG-GEPLLQPEFLSELFKACKEL------GIHTCLDTSGFLGGCTEAADELLEYTDL-VLLDIKHFNPEKYKKLT---- 138 (235)
T ss_pred EeC-cccccCHHHHHHHHHHHHHC------CCCEEEEcCCCCCccHHHHHHHHHhCCE-EEEeCCCCCHHHHHHHH----
Confidence 999 99999999999999999875 45789999995 3456666666664 66999999999999994
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCC------------C
Q psy17091 757 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFP------------N 824 (1250)
Q Consensus 757 ~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~------------~ 824 (1250)
+.+.+.++++++... +.+ .++++++++++|+||+++++.++++|++.++ ....++++||+|.+ .
T Consensus 139 g~~~~~v~~~i~~l~-~~g-~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~--~~~~~~~~p~~~~g~~~~~~~~~~~~~ 214 (235)
T TIGR02493 139 GVSLQPTLDFAKYLA-KRN-KPIWIRYVLVPGYTDSEEDIEALAEFVKTLP--NVERVEVLPYHQLGVYKWEALGIEYPL 214 (235)
T ss_pred CCCcHHHHHHHHHHH-hCC-CcEEEEEeeeCCcCCCHHHHHHHHHHHHhCC--CCceEEecCCCcccHHHHHHcCCcCcc
Confidence 337788999987654 444 4799999999999999999999999999832 12589999999864 2
Q ss_pred CCCCCCcHHHHHHHHHHHHhC
Q psy17091 825 SNLICSKNSRIKIFAKILMNS 845 (1250)
Q Consensus 825 ~~~~~p~~e~i~~f~~iL~~~ 845 (1250)
..+.+|+.+++++++++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ 235 (235)
T TIGR02493 215 EGVKPPNKEQLERAAEIFKEY 235 (235)
T ss_pred CCCCCCCHHHHHHHHHHHhhC
Confidence 356899999999999998764
No 93
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=9.3e-22 Score=221.39 Aligned_cols=169 Identities=24% Similarity=0.310 Sum_probs=133.3
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
+|+++|+||||||||+|+|++.+...+++.|+||++.+......++.++.+|||||+.... ..+..+....+..+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHHHh
Confidence 6899999999999999999999988999999999998777766677889999999996542 1233344445667889
Q ss_pred cCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHH
Q psy17091 264 EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINS 343 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~ 343 (1250)
.+|++++|+|+++..+.. ..++..+...++|+++|+||+|+.+..... +.+........+.+++++||++|.|+++
T Consensus 79 ~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~---~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLL---PLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred hCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHH---HHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 999999999999876654 667777777899999999999997543322 2233333333345899999999999999
Q ss_pred HHHHHHHHHhhccccc
Q psy17091 344 FMESINHVYDSSIIHL 359 (1250)
Q Consensus 344 l~~~i~~~~~~~~~~~ 359 (1250)
|++.+.+.++.....+
T Consensus 155 L~~~l~~~l~~~~~~~ 170 (270)
T TIGR00436 155 LAAFIEVHLPEGPFRY 170 (270)
T ss_pred HHHHHHHhCCCCCCCC
Confidence 9999999887655433
No 94
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=2.6e-21 Score=202.94 Aligned_cols=170 Identities=51% Similarity=0.835 Sum_probs=146.2
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
+++|+++|.+|+|||||+|+|++......++.+++|++.....+..++..+.+|||||+.+.......++.+...+...+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 58899999999999999999999887777889999999988888888999999999999776555556677776777778
Q ss_pred hccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCc--cchHHHHHHHHHHhccCCCCeEEEeecCCCC
Q psy17091 262 ILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH--NQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~ 339 (1250)
++.+|++++|+|++++.+.++..++..+...++|+++|+||+|+.+. .......+.+.+.++.....+++++||+++.
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQ 161 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCC
Confidence 89999999999999999988888888888889999999999999865 3445556667777665566899999999999
Q ss_pred ChHHHHHHHHHH
Q psy17091 340 NINSFMESINHV 351 (1250)
Q Consensus 340 gv~~l~~~i~~~ 351 (1250)
|++++++.+.+.
T Consensus 162 ~i~~~~~~l~~~ 173 (174)
T cd01895 162 GVDKLFDAIDEV 173 (174)
T ss_pred CHHHHHHHHHHh
Confidence 999999998765
No 95
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.86 E-value=4e-21 Score=216.24 Aligned_cols=162 Identities=28% Similarity=0.328 Sum_probs=132.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|+++|+||||||||+|+|++++.+++++.|++|++...+....++.++.+|||||+.... ..+.+.+.+.+..++.++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~-~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK-HSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc-chHHHHHHHHHHHHHhhC
Confidence 6999999999999999999999988899999999998877766677789999999987542 334556667778889999
Q ss_pred CEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHHh-cCCCCcEecccccCCchhHHHHHH
Q psy17091 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFYE-LGIGNPHIISALYGNGIKNFLENI 158 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~~-~~~~~~~~iSA~~g~gi~~L~~~i 158 (1250)
|++++|+|++...... ..+.+.+...++|+++|+||+|+...... .++.. .++.+++++||++|.|+++|++.+
T Consensus 81 Dvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l 159 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFI 159 (270)
T ss_pred CEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHH
Confidence 9999999998754443 56777788889999999999999754433 12222 344578999999999999999999
Q ss_pred HHhhCCccc
Q psy17091 159 LTIELPYKK 167 (1250)
Q Consensus 159 ~~~l~~~~~ 167 (1250)
.+.+++.+.
T Consensus 160 ~~~l~~~~~ 168 (270)
T TIGR00436 160 EVHLPEGPF 168 (270)
T ss_pred HHhCCCCCC
Confidence 999887653
No 96
>PRK15494 era GTPase Era; Provisional
Probab=99.86 E-value=8.2e-21 Score=219.30 Aligned_cols=173 Identities=28% Similarity=0.317 Sum_probs=138.5
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+..+|+++|.||||||||+|+|++.+...+++.++||++.....+.+++.++.+|||||+.+.. ..+.......+..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~---~~l~~~~~r~~~~ 127 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK---GSLEKAMVRCAWS 127 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc---ccHHHHHHHHHHH
Confidence 4679999999999999999999999888889999999999888888999999999999996432 1233344445566
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
+++.||++++|+|+++++...+..++..+.+.+.|.++|+||+|+.+. ...+..+.+.. ...+.+++++||++|.|
T Consensus 128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALSGKN 203 (339)
T ss_pred HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccCccC
Confidence 789999999999999988888888888888888899999999999643 22223232222 12246899999999999
Q ss_pred hHHHHHHHHHHHhhcccccC
Q psy17091 341 INSFMESINHVYDSSIIHLS 360 (1250)
Q Consensus 341 v~~l~~~i~~~~~~~~~~~~ 360 (1250)
++++++++.+.++.....++
T Consensus 204 v~eL~~~L~~~l~~~~~~~~ 223 (339)
T PRK15494 204 IDGLLEYITSKAKISPWLYA 223 (339)
T ss_pred HHHHHHHHHHhCCCCCCCCC
Confidence 99999999998776554443
No 97
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=4.5e-20 Score=233.66 Aligned_cols=162 Identities=28% Similarity=0.407 Sum_probs=132.3
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
..+|+|+|+||||||||+|+|++....++++.||+|++.......+++..+.+|||||+.... +.++......+..+
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~~ 351 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV---EGIDSAIASQAQIA 351 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC---ccHHHHHHHHHHHH
Confidence 368999999999999999999998888899999999999998999999999999999986432 22344444556678
Q ss_pred hccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCCh
Q psy17091 262 ILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNI 341 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv 341 (1250)
++.||++++|+|++++++..+..+.+.+...++|+++|+||+|+.+... . ..+ ... .+...++++||++|.|+
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~-~~~---~~~-lg~~~~~~iSA~~g~GI 424 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--D-AAE---FWK-LGLGEPYPISAMHGRGV 424 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--h-HHH---HHH-cCCCCeEEEECCCCCCc
Confidence 8999999999999999999999999999999999999999999864321 1 111 111 12334679999999999
Q ss_pred HHHHHHHHHHHh
Q psy17091 342 NSFMESINHVYD 353 (1250)
Q Consensus 342 ~~l~~~i~~~~~ 353 (1250)
++|++++.+.+.
T Consensus 425 ~eLl~~i~~~l~ 436 (712)
T PRK09518 425 GDLLDEALDSLK 436 (712)
T ss_pred hHHHHHHHHhcc
Confidence 999999987653
No 98
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.85 E-value=8.1e-21 Score=217.05 Aligned_cols=174 Identities=16% Similarity=0.286 Sum_probs=141.4
Q ss_pred CCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCch
Q psy17091 643 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGII 722 (1250)
Q Consensus 643 ~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~ 722 (1250)
.++.+++++++.....++. ....+|+|.| ||||++++++.++++.+++. +.++++.|+|..
T Consensus 105 ~~t~eel~~~i~~~~~~~~------------~~~~~V~~sG-GEPll~~~~l~~l~~~~k~~------g~~~~i~TnG~~ 165 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYR------------NSGGGVTLSG-GEPLLQPEFALALLQACHER------GIHTAVETSGFT 165 (295)
T ss_pred CCcHHHHHHHHHHHHHhcc------------cCCCcEEeeC-cchhchHHHHHHHHHHHHHc------CCcEeeeCCCCC
Confidence 3566777776665544442 2345799999 99999999999999999876 568999999986
Q ss_pred h--HHHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHH
Q psy17091 723 P--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELI 800 (1250)
Q Consensus 723 ~--~i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~ 800 (1250)
+ .+.++.+..+. +.+|||+++++.|+++++ .+++.++++++...+. + .++++++++++|+||+.+++.+++
T Consensus 166 ~~~~~~~ll~~~d~-~~isl~~~~~~~~~~~~g----~~~~~vl~~i~~l~~~-~-~~~~i~~~~v~~~n~~~~ei~~l~ 238 (295)
T TIGR02494 166 PWETIEKVLPYVDL-FLFDIKHLDDERHKEVTG----VDNEPILENLEALAAA-G-KNVVIRIPVIPGFNDSEENIEAIA 238 (295)
T ss_pred CHHHHHHHHhhCCE-EEEeeccCChHHHHHHhC----CChHHHHHHHHHHHhC-C-CcEEEEeceeCCcCCCHHHHHHHH
Confidence 5 36666666665 448999999999999955 4678899999876643 3 489999999999999999999999
Q ss_pred HHhhcCCCccc---eeEeeeccCCCCCCCCC------------CCcHHHHHHHHHHHHhCC
Q psy17091 801 SLMRKNKILTS---CKINLIPFNCFPNSNLI------------CSKNSRIKIFAKILMNSG 846 (1250)
Q Consensus 801 ~~~~~~~~~~~---~~vnlip~n~~~~~~~~------------~p~~e~i~~f~~iL~~~G 846 (1250)
+|++. +. ..++|+||||.+..+|+ +|+.+++++|++.+++.|
T Consensus 239 ~~~~~----~~~~v~~v~l~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 239 AFLRK----LEPGVDEIDLLPYHRLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFESKG 295 (295)
T ss_pred HHHHH----hccCCceEEecCCCchhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHhcC
Confidence 99998 53 59999999998866653 699999999999998776
No 99
>PRK15494 era GTPase Era; Provisional
Probab=99.84 E-value=3.1e-20 Score=214.51 Aligned_cols=163 Identities=23% Similarity=0.278 Sum_probs=135.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|+++|+||||||||+|+|++.+.+++++.+++|++...+.+.+++.++.+|||||+.... ..+...+.+.+..++.++
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~-~~l~~~~~r~~~~~l~~a 132 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK-GSLEKAMVRCAWSSLHSA 132 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc-ccHHHHHHHHHHHHhhhC
Confidence 8999999999999999999999988889999999999888889999999999999986432 234556667777788999
Q ss_pred CEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc--hhHHhcC--CCCcEecccccCCchhHHHHHHH
Q psy17091 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFYELG--IGNPHIISALYGNGIKNFLENIL 159 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~--~~~~~~~--~~~~~~iSA~~g~gi~~L~~~i~ 159 (1250)
|+++||+|+++.+...+..+.+.++..+.|.++|+||+|+.+.... .+.+... +..++++||++|.|++++++.+.
T Consensus 133 Dvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~ 212 (339)
T PRK15494 133 DLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYIT 212 (339)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHH
Confidence 9999999998877777777788888778899999999998654211 3333222 34689999999999999999999
Q ss_pred HhhCCccc
Q psy17091 160 TIELPYKK 167 (1250)
Q Consensus 160 ~~l~~~~~ 167 (1250)
+.+++++-
T Consensus 213 ~~l~~~~~ 220 (339)
T PRK15494 213 SKAKISPW 220 (339)
T ss_pred HhCCCCCC
Confidence 99987754
No 100
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=2.9e-19 Score=204.21 Aligned_cols=169 Identities=27% Similarity=0.420 Sum_probs=137.1
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
.-.|+++|.||||||||+|+|+|.+.+.+++.|.||++........++.++.+|||||+.+.. ..+.++....+..+
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~~ 81 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWSS 81 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999998777666667899999999996543 23344444555677
Q ss_pred hccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCC-ccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 262 ILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII-HNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~-~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
+..+|++++|+|++++++..+..++..+...++|+++|+||+|+.. ........+.+.+. .++.+++++||++|.|
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALKGDN 158 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCCCCC
Confidence 8899999999999998888888888888877899999999999983 33333344444432 3467899999999999
Q ss_pred hHHHHHHHHHHHhhcc
Q psy17091 341 INSFMESINHVYDSSI 356 (1250)
Q Consensus 341 v~~l~~~i~~~~~~~~ 356 (1250)
++++++.+.+.++...
T Consensus 159 v~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 159 VDELLDVIAKYLPEGP 174 (292)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 9999999998876544
No 101
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=6.4e-20 Score=189.16 Aligned_cols=155 Identities=54% Similarity=0.915 Sum_probs=132.2
Q ss_pred EEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCE
Q psy17091 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDI 85 (1250)
Q Consensus 6 ~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~ 85 (1250)
+++|.+|||||||+|+|++.+...++..+++|++.......+++..+.+|||||+..... .+.+.+...+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCCE
Confidence 589999999999999999987666788999999999999999999999999999975542 3455667777788899999
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-hhHHhcCCCCcEecccccCCchhHHHHHHHHh
Q psy17091 86 IIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILTI 161 (1250)
Q Consensus 86 il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~ 161 (1250)
+++|+|+.++....+..+.++++..+.|+++|+||+|+.+.... ..+..++..+++++||++|.|++++++.+.+.
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 99999998877777777888888889999999999999876554 34445666678999999999999999999864
No 102
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.82 E-value=6.4e-20 Score=189.29 Aligned_cols=150 Identities=23% Similarity=0.307 Sum_probs=116.6
Q ss_pred HHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhc--CCCEEEEEeCCCCCCCccc---hhHHhcCCC-CcEecccccCC
Q psy17091 76 TKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKS--GQPIVLVINKSENINSSIS---LDFYELGIG-NPHIISALYGN 149 (1250)
Q Consensus 76 ~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~--~~p~ilv~NK~D~~~~~~~---~~~~~~~~~-~~~~iSA~~g~ 149 (1250)
...++.++|++++|+|++.+....+..+.+++... ++|+++|+||+|+.+.+.. ...+..... ..+++||+++.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 45678999999999999987777777888888763 4899999999999765433 222322221 24789999999
Q ss_pred chhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC
Q psy17091 150 GIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN 229 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~ 229 (1250)
|+++|++.+.+.+.... ..+.++|+++|.||||||||+|+|.+.+...++++||+|++..... .+
T Consensus 82 ~~~~L~~~l~~~~~~~~------------~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~---~~ 146 (157)
T cd01858 82 GKGSLIQLLRQFSKLHS------------DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT---LM 146 (157)
T ss_pred cHHHHHHHHHHHHhhhc------------cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE---cC
Confidence 99999999976543110 0235789999999999999999999999999999999999865433 24
Q ss_pred eeEEEEecCCC
Q psy17091 230 KKYILIDTAGI 240 (1250)
Q Consensus 230 ~~~~liDTpG~ 240 (1250)
..+.++||||+
T Consensus 147 ~~~~liDtPGi 157 (157)
T cd01858 147 KRIYLIDCPGV 157 (157)
T ss_pred CCEEEEECcCC
Confidence 56899999996
No 103
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.82 E-value=3.1e-19 Score=203.23 Aligned_cols=210 Identities=17% Similarity=0.157 Sum_probs=161.3
Q ss_pred ccCCcccccccccCCCC-------cccCCChhhhHHHHHHHHH-HhhhhhhccccC----CCCCCcceeeecccCccCCC
Q psy17091 623 QVGCAINCIFCSTGRQG-------FVRNLTVGEIIGQLWVTEF-KLRREKNIKINS----QGKRQITNIVMMGMGEPLLN 690 (1250)
Q Consensus 623 q~GC~~~C~fC~t~~~~-------~~r~l~~~ei~~q~~~~~~-~~~~~~~~~~~~----~~~~~~~~ivfmg~GEpl~n 690 (1250)
-.||+++|.||.++... ..+..+++||++++....+ ++....+.++.. .+....+++.|.|+||||++
T Consensus 65 ~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~ 144 (322)
T PRK13762 65 VAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLY 144 (322)
T ss_pred hHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccch
Confidence 35999999999976432 2457889999999988743 331000000000 01134788999999999997
Q ss_pred HHHHHHHHHHhhcCCCCCCCCceEEEEecCchhH-HHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHH
Q psy17091 691 YKSTIGALKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 769 (1250)
Q Consensus 691 ~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~-i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~ 769 (1250)
+ ++.++++.+++. +.+++|.|||..|. +++| ......+.+||+++|++.++++.+...+..++.++++++.
T Consensus 145 p-~l~eli~~~k~~------Gi~~~L~TNG~~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~ 216 (322)
T PRK13762 145 P-YLPELIEEFHKR------GFTTFLVTNGTRPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLEL 216 (322)
T ss_pred h-hHHHHHHHHHHc------CCCEEEECCCCCHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 5 799999999986 67999999998774 4555 3334457799999999999999754245789999999987
Q ss_pred HHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCcc-ceeEeeeccCCCCCCCCC-----CCcHHHHHHHHHHHH
Q psy17091 770 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT-SCKINLIPFNCFPNSNLI-----CSKNSRIKIFAKILM 843 (1250)
Q Consensus 770 ~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~-~~~vnlip~n~~~~~~~~-----~p~~e~i~~f~~iL~ 843 (1250)
..+. + .++++++++++|+||++++ ++++|++. + +..|+++||++.+.++++ .|+.+++..|.+.+.
T Consensus 217 l~~~-~-~~~~ir~tlv~g~Nd~e~~--~~a~l~~~----~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~ 288 (322)
T PRK13762 217 LPSK-K-TRTVIRITLVKGYNMHDPE--GFAKLIER----ANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELA 288 (322)
T ss_pred HHhC-C-CCEEEEEEEECCcCccHHH--HHHHHHHH----cCCCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHH
Confidence 6543 4 4899999999999999987 89999988 4 369999999999988763 589999999999998
Q ss_pred hC-CCe
Q psy17091 844 NS-GIF 848 (1250)
Q Consensus 844 ~~-G~~ 848 (1250)
++ |+.
T Consensus 289 ~~~~~~ 294 (322)
T PRK13762 289 EYTGYE 294 (322)
T ss_pred HhcCCe
Confidence 77 554
No 104
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=3.2e-19 Score=185.51 Aligned_cols=156 Identities=22% Similarity=0.230 Sum_probs=116.2
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceec--cCCCCcceeeEEEEEEEc-CeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVIT--YDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~--~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
.|+++|.+|||||||+|+|++.+.... ...+++|.+.....+.+. +..+.+|||||+. .+. .....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~----------~~~-~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE----------KFI-KNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH----------HHH-HHHHh
Confidence 689999999999999999997543222 235688888777777776 7899999999982 232 22345
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCC-cEEEEEeccccCCccchHHHHHHHHHHhccC--CCCeEEEeecCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGR-SLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL--SFAMFNFISAIK 337 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~-p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~--~~~~iv~iSA~~ 337 (1250)
+++.+|++++|+|++++...+....+..+...+. |+++|+||+|+.+........+++.+.+... ...+++++||++
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVT 150 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCC
Confidence 6789999999999998766666666555555565 9999999999976433333344455544432 347899999999
Q ss_pred CCChHHHHHHHHH
Q psy17091 338 LNNINSFMESINH 350 (1250)
Q Consensus 338 g~gv~~l~~~i~~ 350 (1250)
|.|++++++.+.+
T Consensus 151 ~~~v~~l~~~l~~ 163 (164)
T cd04171 151 GEGIEELKEYLDE 163 (164)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999988754
No 105
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.82 E-value=1.8e-19 Score=215.71 Aligned_cols=158 Identities=36% Similarity=0.458 Sum_probs=131.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
..++|+++|.||||||||+|+|++.+...+++.||||+|.....+.+++.++.+|||||+.+.. +.++.+...+++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~---~~ie~~gi~~~~~ 290 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD---DEVEKIGIERSRE 290 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc---cHHHHHHHHHHHH
Confidence 3589999999999999999999998888889999999999999999999999999999997532 4456665666778
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
+++.+|++++|+|++++.+.++..++.. ..++|+++|+||+|+.+..... .....+++++||++|.|
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeCCCC
Confidence 8899999999999999888777666554 4579999999999997543221 12235799999999999
Q ss_pred hHHHHHHHHHHHhh
Q psy17091 341 INSFMESINHVYDS 354 (1250)
Q Consensus 341 v~~l~~~i~~~~~~ 354 (1250)
+++|++++.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999877643
No 106
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.82 E-value=2.2e-19 Score=204.70 Aligned_cols=220 Identities=16% Similarity=0.187 Sum_probs=146.7
Q ss_pred EEcCCCceEEEEEeC-CCeEEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhhh
Q psy17091 587 QISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKN 665 (1250)
Q Consensus 587 ~~~~d~t~k~l~~~~-~~~ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~~ 665 (1250)
..+.|||.|++++.. +..||+|+++|.+| ++|+ +|.||+|+|.||.++..+..++....|.++|++...+..
T Consensus 68 ~~~~~~~~~d~~~~~~~~~v~gl~hkY~~r-~l~~-~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~----- 140 (321)
T TIGR03821 68 FEQHPGYSADPLDEQDANPVPGLLHKYHGR-VLLI-VTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQH----- 140 (321)
T ss_pred hccCCCcCCCchhhcCCCcCCeeeeecCCE-EEEE-eCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhc-----
Confidence 346789999999998 99999999999988 7887 999999999999998877778777777888865433211
Q ss_pred ccccCCCCCCcceeeecccCccCCCHHHH-HHHHHHhhcC---CCCCCCCceEEEEecCchhHHHHhhhhC--CCeEEEE
Q psy17091 666 IKINSQGKRQITNIVMMGMGEPLLNYKST-IGALKLILSD---HAYGLSRRHVILSTSGIIPMIDKLAQEC--PVELAVS 739 (1250)
Q Consensus 666 ~~~~~~~~~~~~~ivfmg~GEpl~n~~~v-~~~~~~~~~~---~~~~~~~~~itvsT~g~~~~i~~~~~~~--~~~la~s 739 (1250)
..+++|+||| ||||++++.+ .+.++.+..- ..++|+-|-..+.|+-+.+.+-+..+.. +..+.+|
T Consensus 141 --------~~i~~VvltG-GEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h 211 (321)
T TIGR03821 141 --------PEINEVILSG-GDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVH 211 (321)
T ss_pred --------CCCCEEEEeC-cccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEee
Confidence 3589999999 9999998874 3555444431 1222211111233332323322222222 3444468
Q ss_pred ccCCChhhhhccCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeecc
Q psy17091 740 LHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 819 (1250)
Q Consensus 740 l~~~~~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~ 819 (1250)
+.+++ |.++. ..++++... +.| -.+....+|++||||+.+++.+|.+++...|+. .+-+-.+
T Consensus 212 ~dh~~-Ei~d~------------~~~ai~~L~-~~G-i~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~---pyyl~~~ 273 (321)
T TIGR03821 212 INHAN-EIDAE------------VADALAKLR-NAG-ITLLNQSVLLRGVNDNADTLAALSERLFDAGVL---PYYLHLL 273 (321)
T ss_pred CCChH-hCcHH------------HHHHHHHHH-HcC-CEEEecceeeCCCCCCHHHHHHHHHHHHHcCCe---eCccccc
Confidence 98884 76644 566777654 344 589999999999999999999999999874432 2223333
Q ss_pred CCCCCCC-CCCCcHHHHHHHHH
Q psy17091 820 NCFPNSN-LICSKNSRIKIFAK 840 (1250)
Q Consensus 820 n~~~~~~-~~~p~~e~i~~f~~ 840 (1250)
-|.++.. |..|.++..+-+++
T Consensus 274 ~p~gg~~~f~v~~~~~~~i~~~ 295 (321)
T TIGR03821 274 DKVQGAAHFDVDDERARALMAE 295 (321)
T ss_pred CCCCCcccccCCHHHHHHHHHH
Confidence 4566544 44444444443333
No 107
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=2.8e-19 Score=184.36 Aligned_cols=156 Identities=36% Similarity=0.517 Sum_probs=124.9
Q ss_pred EEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccC
Q psy17091 186 AIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEA 265 (1250)
Q Consensus 186 ~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~a 265 (1250)
+++|.+|||||||+|+|++.+....++.+++|++.......+++..+.+|||||+.+... .+.+.........++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE---GISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHHhC
Confidence 578999999999999999987777788999999998888888999999999999976532 12222233445667889
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHH
Q psy17091 266 NVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFM 345 (1250)
Q Consensus 266 d~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~ 345 (1250)
|++++|+|++++.+..+..+..++...++|+++|+||+|+.+.... .+.+ ...+..+++++||++|.|+++++
T Consensus 78 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~----~~~~~~~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 78 DVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAEF----YSLGFGEPIPISAEHGRGIGDLL 150 (157)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHHH----HhcCCCCeEEEecccCCCHHHHH
Confidence 9999999999988888888888888889999999999999764322 1111 12233478999999999999999
Q ss_pred HHHHHH
Q psy17091 346 ESINHV 351 (1250)
Q Consensus 346 ~~i~~~ 351 (1250)
+++.+.
T Consensus 151 ~~l~~~ 156 (157)
T cd01894 151 DAILEL 156 (157)
T ss_pred HHHHhh
Confidence 998754
No 108
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.81 E-value=4.3e-19 Score=206.18 Aligned_cols=206 Identities=16% Similarity=0.194 Sum_probs=163.7
Q ss_pred ceeeeecccCCcccccccccCC----CCcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCccCCCH
Q psy17091 616 NTLCISTQVGCAINCIFCSTGR----QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY 691 (1250)
Q Consensus 616 ~t~c~ssq~GC~~~C~fC~t~~----~~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GEpl~n~ 691 (1250)
..+|+|.+.||+++|.||+.+. .+..+.++++||..++..+.+ ..+++|.|+| ||||++.
T Consensus 17 ~~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~---------------~gi~~I~~tG-GEPll~~ 80 (331)
T PRK00164 17 TYLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVA---------------LGVRKVRLTG-GEPLLRK 80 (331)
T ss_pred CeEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHH---------------CCCCEEEEEC-CCCcCcc
Confidence 5899999999999999999765 255678999999887755433 2378899999 9999995
Q ss_pred HHHHHHHHHhhcCCCCCCCCceEEEEecCch--hHHHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHH
Q psy17091 692 KSTIGALKLILSDHAYGLSRRHVILSTSGII--PMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 769 (1250)
Q Consensus 692 ~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~--~~i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~ 769 (1250)
.+.++++.+++.. +..++++.|+|.. +.+.+|.+..-..+.+|||+.+++.++++. +..++++++++++.
T Consensus 81 -~l~~li~~i~~~~----~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~---~~~~~~~vl~~i~~ 152 (331)
T PRK00164 81 -DLEDIIAALAALP----GIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAIT---GRDRLDQVLAGIDA 152 (331)
T ss_pred -CHHHHHHHHHhcC----CCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCC---CCCCHHHHHHHHHH
Confidence 4778999888652 2468999999964 334444443234588999999999999985 45789999999998
Q ss_pred HHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCC-CCCCCcHHHHHHHHHHHHhCCCe
Q psy17091 770 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS-NLICSKNSRIKIFAKILMNSGIF 848 (1250)
Q Consensus 770 ~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~-~~~~p~~e~i~~f~~iL~~~G~~ 848 (1250)
+.+. +..++.+.+++++|+|| +++.+++++++. +..++++|+|+|++.. .|..+.....+.+.+.|+++|+.
T Consensus 153 ~~~~-g~~~v~i~~vv~~g~n~--~ei~~l~~~~~~----~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 225 (331)
T PRK00164 153 ALAA-GLTPVKVNAVLMKGVND--DEIPDLLEWAKD----RGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWT 225 (331)
T ss_pred HHHC-CCCcEEEEEEEECCCCH--HHHHHHHHHHHh----CCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCc
Confidence 8754 32379999999999999 789999999998 7789999999998765 45555556677889999998887
Q ss_pred EEEe
Q psy17091 849 VTIR 852 (1250)
Q Consensus 849 ~~ir 852 (1250)
.+.+
T Consensus 226 ~~~~ 229 (331)
T PRK00164 226 LQPR 229 (331)
T ss_pred cccc
Confidence 5554
No 109
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.4e-18 Score=177.34 Aligned_cols=170 Identities=26% Similarity=0.308 Sum_probs=133.0
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCc-ceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHH--HHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSV--IKT 258 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~--~~~ 258 (1250)
..-|+++|++|||||||||+|++.+ .+.+|.+||.|+......+ ++ .+.++|.||..-..-..+..|++.. ...
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y 100 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEY 100 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC-cEEEEeCCCcccccCCHHHHHHHHHHHHHH
Confidence 4669999999999999999999955 5889999999998755443 33 3889999999655433344455532 222
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCe--EEEeecC
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAM--FNFISAI 336 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~--iv~iSA~ 336 (1250)
+..-..-.++++++|+..++++.|..+++++.+.++|+++|+||+|.++..+.......+.+.+....... ++..|+.
T Consensus 101 L~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~ 180 (200)
T COG0218 101 LEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSL 180 (200)
T ss_pred HhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecc
Confidence 22223467899999999999999999999999999999999999999987777666667776554333322 8899999
Q ss_pred CCCChHHHHHHHHHHHhh
Q psy17091 337 KLNNINSFMESINHVYDS 354 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~ 354 (1250)
++.|++++.+.|.+.+..
T Consensus 181 ~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 181 KKKGIDELKAKILEWLKE 198 (200)
T ss_pred cccCHHHHHHHHHHHhhc
Confidence 999999999999877643
No 110
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.81 E-value=4.4e-19 Score=210.75 Aligned_cols=158 Identities=34% Similarity=0.498 Sum_probs=129.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
..++|+++|.||||||||+|+|++.++.+++++||||+|.....+.+++.++.+|||||+++.. +.+|.+...++..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~---~~ie~~gi~~~~~ 278 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA---DFVERLGIEKSFK 278 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch---hHHHHHHHHHHHH
Confidence 4689999999999999999999998888899999999999999999999999999999997643 3456665566778
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
+++.+|++++|+|++++.+.++. ++..+...++|+++|+||+|+.+. .. +.+.+.+ ..+++.+||++ .|
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~----~~~~~~~----~~~~~~vSak~-~g 347 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SL----EFFVSSK----VLNSSNLSAKQ-LK 347 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-ch----hhhhhhc----CCceEEEEEec-CC
Confidence 88999999999999998877766 666666678999999999999643 11 1222211 25789999998 59
Q ss_pred hHHHHHHHHHHH
Q psy17091 341 INSFMESINHVY 352 (1250)
Q Consensus 341 v~~l~~~i~~~~ 352 (1250)
++++++.+.+.+
T Consensus 348 I~~~~~~L~~~i 359 (442)
T TIGR00450 348 IKALVDLLTQKI 359 (442)
T ss_pred HHHHHHHHHHHH
Confidence 999998886654
No 111
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=4.8e-19 Score=213.98 Aligned_cols=161 Identities=34% Similarity=0.498 Sum_probs=133.9
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
+|+++|+||||||||+|+|++...+.+++.||+|++.....+.+++..+.+|||||+.... +.+.......+..+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD---DGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc---hhHHHHHHHHHHHHHh
Confidence 5899999999999999999998888899999999999999999999999999999985432 2233333455667889
Q ss_pred cCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHH
Q psy17091 264 EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINS 343 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~ 343 (1250)
.+|++++|+|++.+++..+..+.+++.+.++|+++|+||+|+.+.... ..+ +...+..+++++||++|.|+++
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~---~~~----~~~lg~~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV---AAE----FYSLGFGEPIPISAEHGRGIGD 150 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc---HHH----HHhcCCCCeEEEeCCcCCChHH
Confidence 999999999999999999999999999999999999999998754321 111 1223456789999999999999
Q ss_pred HHHHHHHHHhh
Q psy17091 344 FMESINHVYDS 354 (1250)
Q Consensus 344 l~~~i~~~~~~ 354 (1250)
+++++.+.+..
T Consensus 151 ll~~i~~~l~~ 161 (429)
T TIGR03594 151 LLDAILELLPE 161 (429)
T ss_pred HHHHHHHhcCc
Confidence 99998776643
No 112
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.80 E-value=7.4e-19 Score=183.74 Aligned_cols=160 Identities=24% Similarity=0.310 Sum_probs=114.3
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcch-hhHHHHHHHHHHHhh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIKTLKSI 262 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~e~~~~~~~~~~~ 262 (1250)
+|+++|.+|||||||+|+|++.+. .+++++++|.+.....+.+++.++++|||||+.+..... ..++. .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-~~~~~~~-- 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEM-QAITALA-- 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHH-HHHHHHH--
Confidence 699999999999999999998764 345788899888777777788899999999995432111 11111 1122222
Q ss_pred ccCcEEEEEecCCCCCC---HHHHHHHHHHHHc--CCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCC
Q psy17091 263 LEANVVILLLDAQQNIS---AQDINIANFIYES--GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~---~~d~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~ 337 (1250)
..+|++++|+|+++..+ +....++..+.+. +.|+++|+||+|+.+.....+ ..+.. .....+++++||++
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~----~~~~~-~~~~~~~~~~Sa~~ 152 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE----IEEEE-ELEGEEVLKISTLT 152 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH----HHHhh-hhccCceEEEEecc
Confidence 23689999999987543 3334566666555 799999999999976543332 22222 22346899999999
Q ss_pred CCChHHHHHHHHHHH
Q psy17091 338 LNNINSFMESINHVY 352 (1250)
Q Consensus 338 g~gv~~l~~~i~~~~ 352 (1250)
|.|++++++++.+.+
T Consensus 153 ~~gi~~l~~~l~~~~ 167 (168)
T cd01897 153 EEGVDEVKNKACELL 167 (168)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999987653
No 113
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.80 E-value=4.8e-19 Score=204.64 Aligned_cols=156 Identities=27% Similarity=0.362 Sum_probs=119.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEE-CCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
++|+++|.||||||||+|+|++.. .++.+.+++|+|.....+.+ ++..+.||||||+....+..+.+.+. .+...+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~-~tle~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFR-ATLEEVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHH-HHHHHHH
Confidence 789999999999999999999987 56889999999999999888 57899999999985432234444553 3556789
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccchhHHhcCCCCcEecccccCCchhHHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~ 157 (1250)
+||++++|+|++++..... ..+.++++. .++|+++|+||+|+........ ...+..+++++||++|.|+++|++.
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~-~~~~~~~~i~iSAktg~GI~eL~~~ 346 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER-LEEGYPEAVFVSAKTGEGLDLLLEA 346 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH-HHhCCCCEEEEEccCCCCHHHHHHH
Confidence 9999999999987654433 223445554 3689999999999875433221 1222235799999999999999999
Q ss_pred HHHh
Q psy17091 158 ILTI 161 (1250)
Q Consensus 158 i~~~ 161 (1250)
+.+.
T Consensus 347 I~~~ 350 (351)
T TIGR03156 347 IAER 350 (351)
T ss_pred HHhh
Confidence 8753
No 114
>PRK00089 era GTPase Era; Reviewed
Probab=99.80 E-value=7.4e-19 Score=200.86 Aligned_cols=163 Identities=29% Similarity=0.434 Sum_probs=135.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
.|+++|+||||||||+|+|++.+.+++++.|.+|++...+.....+.++.+|||||+.... ..+.+.+...+..++.++
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~-~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK-RALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch-hHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999988899999999998887776666899999999987543 344556667778889999
Q ss_pred CEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-ccc---hhHH-h-cCCCCcEecccccCCchhHHHHH
Q psy17091 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS-SIS---LDFY-E-LGIGNPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~-~~~---~~~~-~-~~~~~~~~iSA~~g~gi~~L~~~ 157 (1250)
|++++|+|+++++...+..+.+.++..+.|+++|+||+|+... ... .+.+ . .++.+++++||+++.|++++++.
T Consensus 86 D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~ 165 (292)
T PRK00089 86 DLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDV 165 (292)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999877777777888888778899999999999743 322 2222 2 34567899999999999999999
Q ss_pred HHHhhCCccc
Q psy17091 158 ILTIELPYKK 167 (1250)
Q Consensus 158 i~~~l~~~~~ 167 (1250)
+.+.+++.+.
T Consensus 166 L~~~l~~~~~ 175 (292)
T PRK00089 166 IAKYLPEGPP 175 (292)
T ss_pred HHHhCCCCCC
Confidence 9999887653
No 115
>PLN02734 glycyl-tRNA synthetase
Probab=99.80 E-value=1.6e-18 Score=208.13 Aligned_cols=335 Identities=16% Similarity=0.148 Sum_probs=205.7
Q ss_pred cceeeecc-ccCCcccccCCCCcHHH----HHHHHHcCCCCCCCeeEEEEeceeecC-CCCCC--CCCceEEeeEEEecC
Q psy17091 876 KEMYSFID-ELNGDNLSLRPEGTASV----IRSVIENNLIYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGF 947 (1250)
Q Consensus 876 ~~~~~~~D-~~~g~~l~LRpD~T~~i----aR~~a~~~~~~~~P~r~yy~g~VfR~e-~~~~g--r~REf~Q~g~eiig~ 947 (1250)
+-||+..= +.++....|||+....+ .|.+-.+. .++|+-..+||..||+| .|+.| |.|||+|+-+|.|..
T Consensus 234 NLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~~--~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv~ 311 (684)
T PLN02734 234 NLMFQTSIGPSGLSVGYMRPETAQGIFVNFRDLYYYNG--GKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVD 311 (684)
T ss_pred ccceeecccCcCCccceecccccchheeeHHHHHHhcC--CCCCeeeeeccHhhhcccCcccceeeechhhhhhhheecC
Confidence 45776642 32345788999998874 46555443 37999999999999999 77777 999999999999986
Q ss_pred CCch--------hc------------------------------------hHHHHHHHHHHHHCCCCceEEEeC-CC---
Q psy17091 948 PGPD--------ID------------------------------------AELIIMCSRLWKNLNLKNICLELN-SI--- 979 (1250)
Q Consensus 948 ~~~~--------ad------------------------------------aEvi~l~~~~l~~lgl~~~~i~i~-~~--- 979 (1250)
+... +| +-.+..+..+|.++|++.-.+++- |.
T Consensus 312 P~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~E 391 (684)
T PLN02734 312 PEDKSHPKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANE 391 (684)
T ss_pred cccccccchhhhhhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHH
Confidence 5421 01 122344556778888853333321 10
Q ss_pred -----------------c---ChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHH
Q psy17091 980 -----------------G---NFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLL 1039 (1250)
Q Consensus 980 -----------------~---i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 1039 (1250)
| ++.-.-+.+-+|..+.+..+......+...+............+...-+.+-.++..+.
T Consensus 392 mAHYA~dcwD~E~~~~~GWiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~ 471 (684)
T PLN02734 392 MAHYAADCWDAEIECSYGWIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVV 471 (684)
T ss_pred HhhhhhccEeEEEecCCCcEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHHH
Confidence 0 00001122233433333322221101100000000000000011111122334444455
Q ss_pred HHHHHhHHHHHHHHHHHHhhCC-ceEEEeCCCCCCCCCCcceEEEEEECCCC--CCcceeecccchHHHHhcCCCCCCeE
Q psy17091 1040 DYLEKDSLDHFYGIQKILNYNN-ISYKINTKLVRGMDYYNRTVFEWTTDKLG--SQNSICGGGRYDFLIKKFSNKFVPAS 1116 (1250)
Q Consensus 1040 ~~l~~~~~~~l~~l~~~l~~~g-i~i~~D~~~~~~~~YYtG~vFe~~~~~~~--~~~~i~~GGRYD~L~~~fg~~~~pav 1116 (1250)
+.+..-..+++..+.+.|...| +.+.++. .|-.|++-.+-.. ...--.. +..-.|.|
T Consensus 472 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~~~~-----------~~~~iP~V 531 (684)
T PLN02734 472 EALEAMNEKEAMEMKAKLESKGEAEFYVCT---------LGKEVEIKKNMVSISKEKKKEH-----------QRVFTPSV 531 (684)
T ss_pred HHHHhcchhHHHHHHHhhhhcCceeeeecc---------cCcceeechhheeeeeeeeeec-----------CceecCce
Confidence 5554444455555666666555 2232221 0222222111000 0000111 22235665
Q ss_pred -EEEEeHHHHHHHHHHcc-------------CCCCCCCCceEEEEEcCh--HHHHHHHHHHHHHHHcCCEEEEeeccccc
Q psy17091 1117 -GFAIGIERLIELIKKIN-------------INHNFSHQCDIYIVHVGK--EAELKAFVLSENLRTLGLKVILNCVFNNI 1180 (1250)
Q Consensus 1117 -Gfsi~lerl~~~l~~~~-------------~~~~~~~~~~v~V~~~~~--~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~ 1180 (1250)
--|+|++||+.++.++. .||.+.+|++|.|+++.. +....|.++++.||+.|++|.+|++
T Consensus 532 IEPS~GIgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~---- 607 (684)
T PLN02734 532 IEPSFGIGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDIT---- 607 (684)
T ss_pred EecCccHHHHHHHHHHHHhccccCCCcceEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECC----
Confidence 88899999999998843 389999999999998864 3577899999999999999999876
Q ss_pred cccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHh
Q psy17091 1181 HESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIK 1246 (1250)
Q Consensus 1181 ~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~ 1246 (1250)
..++++++++|++.|+||+|+||. +|+|+||+|+++ +|..|+++++++.+.+.+..
T Consensus 608 ~~SIGKRyrrADeiGIPf~ItIG~----dgtVTIRdRdsg------eQ~rV~ldeLv~~I~~li~~ 663 (684)
T PLN02734 608 GTSIGKRYARTDELGVPFAVTVDS----DGSVTIRERDSK------DQVRVPVEEVASVVKDLTDG 663 (684)
T ss_pred CCCHhHHHHHHHHcCCCEEEEECC----CCeEEEEECCCC------ceEEeeHHHHHHHHHHHHcC
Confidence 679999999999999999999997 799999999999 99999999999999887743
No 116
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=2e-18 Score=204.03 Aligned_cols=171 Identities=18% Similarity=0.167 Sum_probs=125.1
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
-..|+|+|.||||||||+|+|++.+. .++++|+||+++....+.+++.++++|||||+....... +......+++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g----~gLg~~fLrh 233 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG----KGLGLDFLRH 233 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchh----hHHHHHHHHH
Confidence 36899999999999999999998754 457999999999999999999999999999996543211 1122345678
Q ss_pred hccCcEEEEEecCCCCC----CHHHHH-HHHHHH--------------HcCCcEEEEEeccccCCccchHHHHHHHHHHh
Q psy17091 262 ILEANVVILLLDAQQNI----SAQDIN-IANFIY--------------ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL 322 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~----~~~d~~-~~~~~~--------------~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l 322 (1250)
+..+|++++|+|++... ...+.. +...+. -.++|+|||+||+|+.+..... +.+...+
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~---e~l~~~l 310 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA---EFVRPEL 310 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH---HHHHHHH
Confidence 89999999999997521 122222 222221 2469999999999997543322 2222222
Q ss_pred ccCCCCeEEEeecCCCCChHHHHHHHHHHHhhcccccCh
Q psy17091 323 NFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLST 361 (1250)
Q Consensus 323 ~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~ 361 (1250)
... ..+++++||+++.|+++|+.++.+.+.......++
T Consensus 311 ~~~-g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~~~ 348 (500)
T PRK12296 311 EAR-GWPVFEVSAASREGLRELSFALAELVEEARAAEPE 348 (500)
T ss_pred HHc-CCeEEEEECCCCCCHHHHHHHHHHHHHhhhcccCc
Confidence 222 35899999999999999999999998776654443
No 117
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.80 E-value=1.3e-18 Score=179.22 Aligned_cols=155 Identities=36% Similarity=0.543 Sum_probs=126.3
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
++|+++|.+|+|||||+|++++.....+++.+++|.+.....+.+.+.++.+|||||+.+.. ...+.....+....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~---~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE---DEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc---chHHHHHHHHHHHHH
Confidence 58999999999999999999998877778899999998888888888899999999996653 123333344556677
Q ss_pred ccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChH
Q psy17091 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~ 342 (1250)
..+|++++|+|+++..+..+...+.. ..++|+++|+||+|+.+.... .......+++++||+++.|++
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCCHH
Confidence 89999999999998888887776665 567999999999999865432 122234689999999999999
Q ss_pred HHHHHHHHHH
Q psy17091 343 SFMESINHVY 352 (1250)
Q Consensus 343 ~l~~~i~~~~ 352 (1250)
++++++.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 118
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=7.6e-19 Score=212.84 Aligned_cols=161 Identities=26% Similarity=0.417 Sum_probs=129.2
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
..+|+|+|.||||||||+|+|++...+.+++.||+|++.....+.+++..+.+|||||+.... ..+.......+..+
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~~ 114 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA---KGLQASVAEQAEVA 114 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc---hhHHHHHHHHHHHH
Confidence 468999999999999999999998878888999999999999999999999999999986322 12222223345567
Q ss_pred hccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCCh
Q psy17091 262 ILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNI 341 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv 341 (1250)
++.||++|+|+|++++.+..+..++.++...++|+++|+||+|+..... +. .++ . ..+....+++||++|.|+
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~-~~~---~-~~g~~~~~~iSA~~g~gi 187 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DA-AAL---W-SLGLGEPHPVSALHGRGV 187 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hh-HHH---H-hcCCCCeEEEEcCCCCCc
Confidence 8999999999999999999999999999989999999999999864321 11 111 1 112224579999999999
Q ss_pred HHHHHHHHHHH
Q psy17091 342 NSFMESINHVY 352 (1250)
Q Consensus 342 ~~l~~~i~~~~ 352 (1250)
++|++++.+.+
T Consensus 188 ~eL~~~i~~~l 198 (472)
T PRK03003 188 GDLLDAVLAAL 198 (472)
T ss_pred HHHHHHHHhhc
Confidence 99999997665
No 119
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=9e-19 Score=204.43 Aligned_cols=167 Identities=19% Similarity=0.207 Sum_probs=125.0
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC-eeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
..|+|+|.||||||||+|+|++.+ ..++++|+||+.+....+.+.+ ..++++||||+.+..+....+ ..+.+++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~L----g~~~l~~ 234 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGL----GIRFLKH 234 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhH----HHHHHHH
Confidence 369999999999999999999876 4788999999999999998875 469999999997654221111 2344578
Q ss_pred hccCcEEEEEecCCC---C-CCHHHHHHHHHHHH-----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 262 ILEANVVILLLDAQQ---N-ISAQDINIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 262 ~~~ad~vllviD~~~---~-~~~~d~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
+..+|++++|+|++. . ..++...+++.+.. .++|+++|+||+|+.+.....+..+.+.+.+.. ..++++
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~--~~~Vi~ 312 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGW--EGPVYL 312 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCC--CCCEEE
Confidence 899999999999872 2 22333455566555 368999999999997654443334444333221 137899
Q ss_pred eecCCCCChHHHHHHHHHHHhhcc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+||+++.|+++|++.|.+.++...
T Consensus 313 ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 313 ISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred EECCCCcCHHHHHHHHHHHhhhCc
Confidence 999999999999999988876543
No 120
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.80 E-value=1.5e-18 Score=201.22 Aligned_cols=195 Identities=15% Similarity=0.144 Sum_probs=150.8
Q ss_pred cCCcccccccccCCCCc---------------------------ccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCc
Q psy17091 624 VGCAINCIFCSTGRQGF---------------------------VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQI 676 (1250)
Q Consensus 624 ~GC~~~C~fC~t~~~~~---------------------------~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1250)
.||++.|.||++++... .+.+|++|+++++.....++. ...
T Consensus 7 ~gC~~~C~wC~~p~~~~~~~~~c~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~------------~~~ 74 (404)
T TIGR03278 7 IDCRGFCRYCYFKKVDDEQPFGCKNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRT------------GRD 74 (404)
T ss_pred CCCCCcCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhc------------CCC
Confidence 58888888888665322 344679999999999988774 124
Q ss_pred ceeeecccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEE-ecC--ch--hHHHHhhhh-CCCeEEEEccCCChhhhhc
Q psy17091 677 TNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILS-TSG--II--PMIDKLAQE-CPVELAVSLHASNNNLRNK 750 (1250)
Q Consensus 677 ~~ivfmg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvs-T~g--~~--~~i~~~~~~-~~~~la~sl~~~~~~~r~~ 750 (1250)
..|+|.|.|||+ +++++.+.++.+++. +.|++|. ||| +. ..++++++. ++..+ +||||+|+++|++
T Consensus 75 ggVtisGGGepl-~~~~l~eLl~~lk~~------gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~-iSvka~dpe~h~k 146 (404)
T TIGR03278 75 TKVTISGGGDVS-CYPELEELTKGLSDL------GLPIHLGYTSGKGFDDPEIAEFLIDNGVREVS-FTVFATDPELRRE 146 (404)
T ss_pred CEEEEECCcccc-cCHHHHHHHHHHHhC------CCCEEEeCCCCcccCCHHHHHHHHHcCCCEEE-EecccCCHHHHHH
Confidence 568999966666 568999999999987 6789998 996 42 237777776 66544 8999999999999
Q ss_pred cCCCCCCCCH-HHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCC----
Q psy17091 751 LVPISKKYPL-KELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS---- 825 (1250)
Q Consensus 751 ~~p~~~~~~~-~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~---- 825 (1250)
++. .|. +.++++++++.+ . . .++.+.+++||+||+++.. +++++++..+ +..|+|.|||+++..
T Consensus 147 l~G----~~~a~~ILe~L~~L~e-~-~-~v~~~ivlIPGiND~eel~-~ti~~L~~lg---~~~V~L~~y~~~g~~ky~l 215 (404)
T TIGR03278 147 WMK----DPTPEASLQCLRRFCE-S-C-EVHAASVIIPGVNDGDVLW-KTCADLESWG---AKALILMRFANTEEQGLIL 215 (404)
T ss_pred HhC----CCCHHHHHHHHHHHHh-c-C-CEEEEEEEeCCccCcHHHH-HHHHHHHHCC---CCEEEEEeccccccccccc
Confidence 954 444 899999998765 3 3 7999999999999999985 9999999832 248999999976533
Q ss_pred -------CCCCCcHHHHHHH-HHHHHhCCCeE
Q psy17091 826 -------NLICSKNSRIKIF-AKILMNSGIFV 849 (1250)
Q Consensus 826 -------~~~~p~~e~i~~f-~~iL~~~G~~~ 849 (1250)
.+.+++.+++..+ +++.+++|+.+
T Consensus 216 g~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~ 247 (404)
T TIGR03278 216 GNAPIIPGIKPHTVSEFKNIVRETHKEFPIRV 247 (404)
T ss_pred CCcCcccCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 1557777777777 77777888763
No 121
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.80 E-value=1.7e-18 Score=205.59 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=105.7
Q ss_pred CCeE-EEEEeHHHHHHHHHHcc--------------CCCCCCCCceEEEEEcCh--HHHHHHHHHHHHHHHcCCEEEEee
Q psy17091 1113 VPAS-GFAIGIERLIELIKKIN--------------INHNFSHQCDIYIVHVGK--EAELKAFVLSENLRTLGLKVILNC 1175 (1250)
Q Consensus 1113 ~pav-Gfsi~lerl~~~l~~~~--------------~~~~~~~~~~v~V~~~~~--~~~~~a~~~a~~Lr~~gi~v~~~~ 1175 (1250)
.|.| --|+|+|||+.++.+++ .||.+.+|.+|+|++.++ +....|.++++.||+.|++|++|+
T Consensus 414 ~P~VIepS~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~~el~~~A~eIa~~LR~~GI~VeiD~ 493 (551)
T TIGR00389 414 IPHVIEPSFGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNKEELKEIAKEIFQALRKTGIRIKYDD 493 (551)
T ss_pred cceEEEcccCHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 5555 67789999999987733 357777999999999984 478899999999999999999987
Q ss_pred ccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHH
Q psy17091 1176 VFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKK 1243 (1250)
Q Consensus 1176 ~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~ 1243 (1250)
. . ++++++++|++.|+||+|+||++++++|+|+||+++++ +|..++++++.+++.+.
T Consensus 494 s----~-sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~------eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 494 S----G-TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSM------KQVRVKIKELPSYIKKL 550 (551)
T ss_pred C----C-CHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCC------ceEEeeHHHHHHHHHhh
Confidence 6 3 59999999999999999999999999999999999999 99999999999888753
No 122
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.80 E-value=8.9e-19 Score=202.41 Aligned_cols=157 Identities=25% Similarity=0.363 Sum_probs=119.9
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEE-cCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
.++|+++|.||||||||+|+|++.+ ..+++.+|+|+|.....+.+ ++.++.+|||||+.+.. ..+.++.|. .++.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~~~lie~f~--~tle 264 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-PHELVAAFR--ATLE 264 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC-CHHHHHHHH--HHHH
Confidence 4899999999999999999999987 66779999999999988888 57899999999984421 233445553 4566
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHH-HHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINI-ANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~-~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
.+..||++++|+|++++.+..+... ...+.+ .++|+++|+||+|+.+..... ... . ...+++++||+
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~----~~~---~--~~~~~i~iSAk 335 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE----RLE---E--GYPEAVFVSAK 335 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH----HHH---h--CCCCEEEEEcc
Confidence 7899999999999998766555432 223332 378999999999997532221 111 1 12468999999
Q ss_pred CCCChHHHHHHHHHH
Q psy17091 337 KLNNINSFMESINHV 351 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~ 351 (1250)
+|.|+++|++.+.+.
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998653
No 123
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=2e-18 Score=197.77 Aligned_cols=164 Identities=21% Similarity=0.267 Sum_probs=122.3
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEE-cCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
..|+|+|.||||||||+|+|++.+ ..++++|+||+++....+.+ ++.++++|||||+.+....... .....+++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~g----Lg~~flrh 233 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAG----LGHRFLKH 233 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcccc----HHHHHHHH
Confidence 469999999999999999999865 45789999999999999988 5678999999999764422111 12345678
Q ss_pred hccCcEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 262 ILEANVVILLLDAQQNISAQDIN-IANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~-~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
++.++++++|+|+++..+.++.. +...+.. .++|+++|+||+|+.+...... +.+....... ..+++++||
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~--~~~~~~~~~~-~~~i~~iSA 310 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEERE--KRAALELAAL-GGPVFLISA 310 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHH--HHHHHHHHhc-CCCEEEEEc
Confidence 88999999999998755555544 4444443 3689999999999975433221 1122212211 258999999
Q ss_pred CCCCChHHHHHHHHHHHhh
Q psy17091 336 IKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (1250)
+++.|++++++++.+.+..
T Consensus 311 ktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 311 VTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 124
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=7.2e-19 Score=208.11 Aligned_cols=166 Identities=21% Similarity=0.272 Sum_probs=141.0
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
..+|+++|+||||||||+|+|+|.+ ..++++||+|.+..++.+.++++.+.++|+||..+..... .++--..+.+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S--~DE~Var~~ll- 78 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS--EDEKVARDFLL- 78 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC--chHHHHHHHHh-
Confidence 4679999999999999999999976 5667999999999999999999999999999998765321 22222222222
Q ss_pred hccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCCh
Q psy17091 262 ILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNI 341 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv 341 (1250)
-..+|+++.|+|+++- +++..+.-++.+.|+|+++++|++|..++...+...+.+++.++ +|++++||++|.|+
T Consensus 79 ~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG----vPVv~tvA~~g~G~ 152 (653)
T COG0370 79 EGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLG----VPVVPTVAKRGEGL 152 (653)
T ss_pred cCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhC----CCEEEEEeecCCCH
Confidence 2577999999999987 88999999999999999999999999887777777888888886 89999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q psy17091 342 NSFMESINHVYDSSII 357 (1250)
Q Consensus 342 ~~l~~~i~~~~~~~~~ 357 (1250)
+++.+++.+..++...
T Consensus 153 ~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 153 EELKRAIIELAESKTT 168 (653)
T ss_pred HHHHHHHHHhcccccc
Confidence 9999999888776553
No 125
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=1.8e-18 Score=182.81 Aligned_cols=159 Identities=25% Similarity=0.327 Sum_probs=120.0
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCc-ceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHH--H
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVI--K 257 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~--~ 257 (1250)
+.++|+|+|.+|+|||||+|+|++.. ...+++.+|+|.+..... ++ ..+.+|||||+..........+.+... .
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--VN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--eC-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 46899999999999999999999875 556678899998765433 33 479999999986543222222333211 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCC-CCeEEEeecC
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLS-FAMFNFISAI 336 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~-~~~iv~iSA~ 336 (1250)
.+.....+|++++|+|++++++..+..+++.+...++|+++|+||+|+.+........+++++.+.... ..+++++||+
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~ 173 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSL 173 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECC
Confidence 222223568999999999999999999888888889999999999999876555666667777666543 2489999999
Q ss_pred CCCChH
Q psy17091 337 KLNNIN 342 (1250)
Q Consensus 337 ~g~gv~ 342 (1250)
+|+|++
T Consensus 174 ~g~gi~ 179 (179)
T TIGR03598 174 KKTGID 179 (179)
T ss_pred CCCCCC
Confidence 999974
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.79 E-value=1.5e-18 Score=181.41 Aligned_cols=158 Identities=25% Similarity=0.307 Sum_probs=113.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHh-h
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI-I 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~-~ 81 (1250)
|+|+++|.+|||||||+|+|++.... ++..+++|.+.......+++..+.+|||||+.+..... ...+..+...++ .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE-RNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC-CchHHHHHHHHHHh
Confidence 78999999999999999999988753 56678889999888887888999999999985321100 001111222222 2
Q ss_pred cCCEEEEEEeCCCCCC---hhhHHHHHHHHhc--CCCEEEEEeCCCCCCCccc---hhHHhcCCCCcEecccccCCchhH
Q psy17091 82 ESDIIIFIVDGRQGLV---EQDKLITNFLRKS--GQPIVLVINKSENINSSIS---LDFYELGIGNPHIISALYGNGIKN 153 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~---~~~~~~~~~l~~~--~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~~iSA~~g~gi~~ 153 (1250)
.+|++|+|+|+++... .....+.+.++.. +.|+++|+||+|+...... .++......+++++||++|.|+++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 3689999999986432 2223455666554 7899999999999765443 233343444789999999999999
Q ss_pred HHHHHHHhh
Q psy17091 154 FLENILTIE 162 (1250)
Q Consensus 154 L~~~i~~~l 162 (1250)
+++++.+.+
T Consensus 159 l~~~l~~~~ 167 (168)
T cd01897 159 VKNKACELL 167 (168)
T ss_pred HHHHHHHHh
Confidence 999988754
No 127
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=2.7e-18 Score=175.34 Aligned_cols=159 Identities=25% Similarity=0.383 Sum_probs=126.1
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCC-CcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcc-hhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE-VKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~-~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~ 79 (1250)
.|.||++|++|||||||+|+|++++ .+.++.+||.|+...+.. +++ .+.+||.||+.-. ...+..+.....+..|
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~--~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y 100 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE--VDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEY 100 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE--ecC-cEEEEeCCCcccccCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999976 488999999999988655 433 3889999998632 2235556666666666
Q ss_pred hhc---CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-------hhHHhcCCC-C--cEecccc
Q psy17091 80 IIE---SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFYELGIG-N--PHIISAL 146 (1250)
Q Consensus 80 ~~~---ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-------~~~~~~~~~-~--~~~iSA~ 146 (1250)
+.. -.++++++|++++....|.+..+|+...+.|+++|+||+|..+.... .+....... . ++..|+.
T Consensus 101 L~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~ 180 (200)
T COG0218 101 LEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSL 180 (200)
T ss_pred HhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecc
Confidence 654 45888999999999999999999999999999999999999876443 111222221 2 6789999
Q ss_pred cCCchhHHHHHHHHhhC
Q psy17091 147 YGNGIKNFLENILTIEL 163 (1250)
Q Consensus 147 ~g~gi~~L~~~i~~~l~ 163 (1250)
.+.|++++...|.+.+.
T Consensus 181 ~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 181 KKKGIDELKAKILEWLK 197 (200)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 99999999999987664
No 128
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.79 E-value=1.2e-18 Score=182.62 Aligned_cols=160 Identities=20% Similarity=0.239 Sum_probs=115.9
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe-eEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
+|+++|.+|||||||+|+|.+.+. .++..+++|++.....+.+++. ++.+|||||+.+...... .+ ....+..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---~~-~~~~~~~~ 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGK---GL-GHRFLRHI 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccC---Cc-hHHHHHHH
Confidence 489999999999999999998654 5678889999888788888876 999999999854321110 01 12233456
Q ss_pred ccCcEEEEEecCCCC-CCHHHH-HHHHHHHH-----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 263 LEANVVILLLDAQQN-ISAQDI-NIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 263 ~~ad~vllviD~~~~-~~~~d~-~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+.+|++++|+|++++ -+.++. .+.+.+.+ .++|+++|+||+|+.+.....+..+.+ .......+++++||
T Consensus 77 ~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~Sa 153 (170)
T cd01898 77 ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKEL---LKELWGKPVFPISA 153 (170)
T ss_pred HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHH---HhhCCCCCEEEEec
Confidence 779999999999986 343433 34444443 368999999999997655443333322 22223468999999
Q ss_pred CCCCChHHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINHV 351 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (1250)
++|.|++++++++.+.
T Consensus 154 ~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 154 LTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998654
No 129
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.79 E-value=2.2e-18 Score=183.60 Aligned_cols=160 Identities=32% Similarity=0.429 Sum_probs=127.2
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCccee-----------------ccCCCCcceeeEEEEEE--EcCeeEEEEecCCCCC
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVI-----------------TYDTPGTTRDSIKSLFE--YNNKKYILIDTAGIRR 242 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~-----------------~~~~~gtT~~~~~~~~~--~~~~~~~liDTpG~~~ 242 (1250)
-++|+++|+.++|||||+++|++..... .....+.|.+.....+. ..++.++++||||+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~-- 80 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH-- 80 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS--
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc--
Confidence 4789999999999999999999543211 11235788888888888 88999999999999
Q ss_pred CCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHh
Q psy17091 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL 322 (1250)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l 322 (1250)
..|. ......++.+|++++|+|+.+++..+....+..+...++|+++|+||+|+. .....+..+++...+
T Consensus 81 --------~~f~-~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 81 --------EDFI-KEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKEKL 150 (188)
T ss_dssp --------HHHH-HHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHH
T ss_pred --------ccee-ecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHHHHh
Confidence 3333 344567899999999999999999999999999999999999999999998 334445555555322
Q ss_pred ----ccCC--CCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 323 ----NFLS--FAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 323 ----~~~~--~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
...+ ..|++++||++|.|+++|++.+.+.++
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3222 479999999999999999999988764
No 130
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=1.8e-18 Score=183.88 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=120.2
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCC------cceec---------cCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcc
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGE------NRVIT---------YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~------~~~~~---------~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 246 (1250)
.++|+++|++|+|||||+++|++. ..... ...+|+|.+.....+++++.++.++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~----- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA----- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-----
Confidence 478999999999999999999853 11111 1267999999888888889999999999993
Q ss_pred hhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEeccccCCccc-hHHHHHHHHHHhcc
Q psy17091 247 FEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQ-RKIIKNNIKKKLNF 324 (1250)
Q Consensus 247 ~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~l~~~l~~ 324 (1250)
.| ...+...+..+|++++|+|++.+++.++..++..+.+.++| +|+|+||||+....+ .+...+++.+.+..
T Consensus 77 -----~~-~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~ 150 (195)
T cd01884 77 -----DY-IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSK 150 (195)
T ss_pred -----HH-HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 22 23445677899999999999999999999999999999998 778999999975433 33455667777665
Q ss_pred CC----CCeEEEeecCCCCChHH
Q psy17091 325 LS----FAMFNFISAIKLNNINS 343 (1250)
Q Consensus 325 ~~----~~~iv~iSA~~g~gv~~ 343 (1250)
.+ .+|++++||++|.+..+
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred hcccccCCeEEEeeCccccCCCC
Confidence 54 48999999999998643
No 131
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.79 E-value=1.8e-18 Score=178.78 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=117.8
Q ss_pred EEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCc
Q psy17091 187 IVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEAN 266 (1250)
Q Consensus 187 ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad 266 (1250)
++|.+|||||||+|++.+.. ..+++.+|+|.+.....+.+++..+.+|||||+.+..... .+.......+.. ..+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~-~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS--EDEKVARDFLLG-EKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCC--hhHHHHHHHhcC-CCCc
Confidence 57999999999999999875 5667889999999888899999999999999997654211 111111122222 5899
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHHH
Q psy17091 267 VVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFME 346 (1250)
Q Consensus 267 ~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~ 346 (1250)
++++|+|++.. +....++..+.+.++|+++|+||+|+.+........+.+.+.++ .+++++||++|.|++++++
T Consensus 77 ~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 77 LIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLG----VPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhC----CCeEEEEccCCCCHHHHHH
Confidence 99999999875 44556666777789999999999999765433333334444332 5899999999999999999
Q ss_pred HHHHHH
Q psy17091 347 SINHVY 352 (1250)
Q Consensus 347 ~i~~~~ 352 (1250)
++.+..
T Consensus 151 ~l~~~~ 156 (158)
T cd01879 151 AIAELA 156 (158)
T ss_pred HHHHHh
Confidence 987753
No 132
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=1.6e-18 Score=204.70 Aligned_cols=160 Identities=25% Similarity=0.301 Sum_probs=121.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE-EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.|+|+++|.||||||||+|+|++.+.+ +.+.+++|+|.....+.+.+. .+.+|||||+....+..+.+.+.. +...+
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~-tl~~~ 274 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKA-TLQET 274 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHH-HHHHh
Confidence 379999999999999999999998766 788999999999988888764 899999999854322344445543 56678
Q ss_pred hcCCEEEEEEeCCCCCChhhH-HHHHHHHh---cCCCEEEEEeCCCCCCCccc-hhHHhcCCCCcEecccccCCchhHHH
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK-LITNFLRK---SGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFL 155 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~-~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-~~~~~~~~~~~~~iSA~~g~gi~~L~ 155 (1250)
.+||++|+|+|++++...... .+.+++.. .++|+++|+||+|+...... .+....+....+++||++|.|+++|+
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~ 354 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLF 354 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence 999999999999886544432 23344443 46899999999998653221 22222333234889999999999999
Q ss_pred HHHHHhhC
Q psy17091 156 ENILTIEL 163 (1250)
Q Consensus 156 ~~i~~~l~ 163 (1250)
+.+.+.+.
T Consensus 355 e~I~~~l~ 362 (426)
T PRK11058 355 QALTERLS 362 (426)
T ss_pred HHHHHHhh
Confidence 99998764
No 133
>KOG1637|consensus
Probab=99.78 E-value=1.1e-18 Score=192.89 Aligned_cols=361 Identities=14% Similarity=0.202 Sum_probs=251.5
Q ss_pred eEeeeccCCC-CCCCCCCCcHHH-----HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccC
Q psy17091 813 KINLIPFNCF-PNSNLICSKNSR-----IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELN 886 (1250)
Q Consensus 813 ~vnlip~n~~-~~~~~~~p~~e~-----i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~ 886 (1250)
.-+|-=||+. |++-|--|...+ ++-++...+.+|++ +|-+|.......|- .++||..+.++||+|.- .
T Consensus 171 ~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~-EVitPniy~~~LWe---~SGHwqnY~enmF~~e~--e 244 (560)
T KOG1637|consen 171 EQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFT-EVITPNIYNKKLWE---TSGHWQNYSENMFKFEV--E 244 (560)
T ss_pred hhhheeeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCc-eecCcchhhhhhhh---hccchhhhhhhceeeee--c
Confidence 4455666765 456665555443 34455666788999 89999988888886 89999999999999965 4
Q ss_pred CcccccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCCCC----CCCCceEEeeEEEecCCCchh-c-hHHHHH
Q psy17091 887 GDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQY----GRYRQFYQIGVEAIGFPGPDI-D-AELIIM 959 (1250)
Q Consensus 887 g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~~----gr~REf~Q~g~eiig~~~~~a-d-aEvi~l 959 (1250)
.+.++|.|+.|++++-+++.+.+++ .+|+|+.-+|.++|+|-++. .|.|.|+|.|++||+..++.- + .-++..
T Consensus 245 ke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~f 324 (560)
T KOG1637|consen 245 KEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDF 324 (560)
T ss_pred hhhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHH
Confidence 6789999999999999999888777 88999999999999996654 499999999999999876544 3 246677
Q ss_pred HHHHHHHCCCCceEEEeCCC-----cChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhh
Q psy17091 960 CSRLWKNLNLKNICLELNSI-----GNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILIN 1034 (1250)
Q Consensus 960 ~~~~l~~lgl~~~~i~i~~~-----~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 1034 (1250)
+..++.-+|+ .+.+.++.+ +-++.|.+....+...++..... |-.. ....++.++.
T Consensus 325 l~~vY~~fgf-~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~p-w~lN-~GDGAFYGPK---------------- 385 (560)
T KOG1637|consen 325 LDYVYGVFGF-TFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEP-WVLN-PGDGAFYGPK---------------- 385 (560)
T ss_pred HHHHHHhccc-cceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCC-ceec-CCCcccccce----------------
Confidence 7777777786 478888765 34444444444444444433211 0000 0000000000
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCC
Q psy17091 1035 APKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVP 1114 (1250)
Q Consensus 1035 ~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~p 1114 (1250)
++.-..+++.+-.++ -.|.+|+.+.-.++.+ | ....| -| ..|
T Consensus 386 ----IDi~l~Dal~r~hQc--------aTIQLDFqLP~rFdL~----y---~~~~g---------~~----------erP 427 (560)
T KOG1637|consen 386 ----IDITLDDALGRKHQC--------ATIQLDFQLPIRFDLE----Y---ETEDG---------DL----------ERP 427 (560)
T ss_pred ----eeeEhhhhcCcccce--------eeeeecccChhhcCce----e---ecccc---------cc----------cch
Confidence 000000111111111 1355666554333211 1 11000 01 122
Q ss_pred eE---EEEEeHHHHHHHHHH--ccCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHH
Q psy17091 1115 AS---GFAIGIERLIELIKK--ININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMK 1189 (1250)
Q Consensus 1115 av---Gfsi~lerl~~~l~~--~~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~ 1189 (1250)
+. ..-.++||++++|.| .|.||.|.+|-++.||++++....+|.++.++|..+|+-++++.. +.++.++++
T Consensus 428 VmIHRAIlGSvERmiaiL~E~~~gkwPFWlSPRq~~vIpVse~~~~ya~~V~~ql~~a~f~~Dld~t----~~tl~kkir 503 (560)
T KOG1637|consen 428 VMIHRAILGSVERMIAILLESYGGKWPFWLSPRQAVVIPVSEGPLDYATSVQKQLEEAGFYVDLDPT----DSTLRKKIR 503 (560)
T ss_pred hhHHHHHhhhHHHHHHHHHHHhCCCCCeeeccceEEEEECCCcchhHHHHHHHHHHhhhceeecCCc----cchHHHHHh
Confidence 22 233479999999998 468999999999999999999999999999999999999999877 578999999
Q ss_pred HHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHH
Q psy17091 1190 RANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKK 1243 (1250)
Q Consensus 1190 ~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~ 1243 (1250)
.|...+..|++|||++|++.++|.||.++... + ..+-+++++++.+.+.+.
T Consensus 504 ~Aqla~yn~i~VVGdkE~~~~~vnVr~Rd~~~-~--~~~~~~tie~~~~~~~~l 554 (560)
T KOG1637|consen 504 NAQLAHYNFIFVVGDKEVETGRVNVRTRDNRD-N--KTESEMTIEELSDEFKEL 554 (560)
T ss_pred hhhhcceeEEEEEchhhhhcCceeeecccccc-c--cccceeeHHHHHHHHHHh
Confidence 99999999999999999999999999986641 1 255589999888877654
No 134
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.78 E-value=1.9e-18 Score=184.86 Aligned_cols=160 Identities=21% Similarity=0.226 Sum_probs=118.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCC------cceeccCCCCcceeeEEEEEEEc--------------CeeEEEEecCCCCC
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGE------NRVITYDTPGTTRDSIKSLFEYN--------------NKKYILIDTAGIRR 242 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~------~~~~~~~~~gtT~~~~~~~~~~~--------------~~~~~liDTpG~~~ 242 (1250)
++|+++|++|+|||||+++|++. +....+..+|+|.+.....+.+. +..+.+|||||+.+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 22233456788888876666665 67899999999831
Q ss_pred CCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHH--
Q psy17091 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK-- 320 (1250)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~-- 320 (1250)
+ ........+.+|++++|+|++++.+.++...+......++|+++|+||+|+......+...+++.+
T Consensus 81 ----------~-~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l 149 (192)
T cd01889 81 ----------L-IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKL 149 (192)
T ss_pred ----------H-HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHH
Confidence 1 122335567789999999999988877766666555568999999999999854443333333333
Q ss_pred --Hhcc--CCCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 321 --KLNF--LSFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 321 --~l~~--~~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
.+.. ....+++++||++|.|+++|++.+...+.
T Consensus 150 ~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 150 QKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 2211 23468999999999999999999977653
No 135
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.78 E-value=9.1e-18 Score=174.60 Aligned_cols=164 Identities=30% Similarity=0.464 Sum_probs=127.9
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
..+|+++|.+|+|||||+|++++......++.+.+++......+...+..+.+|||||+...... ...+........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK---LGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH---HHHHHHHHHHHH
Confidence 47899999999999999999999887777788888888777666666788999999999654321 122222234456
Q ss_pred hccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCC-ccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 262 ILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII-HNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~-~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
+..+|++++|+|+++..+..+..+...+...+.|+++|+||+|+.. .....+..+.+.. .....+++++|++++.|
T Consensus 80 ~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALKGEN 156 (168)
T ss_pred HHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEeccCCC
Confidence 7899999999999988777788888888888899999999999973 3333334444433 33357899999999999
Q ss_pred hHHHHHHHHHH
Q psy17091 341 INSFMESINHV 351 (1250)
Q Consensus 341 v~~l~~~i~~~ 351 (1250)
++++++.+.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998654
No 136
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=3.7e-18 Score=195.48 Aligned_cols=160 Identities=26% Similarity=0.337 Sum_probs=121.8
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEE-CCEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+.|+|||.||||||||+|+|++.+.. ++++|++|+++..+.+.+ ++..+.+|||||+.+.... ...+..+++..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~--~~gLg~~flrhi 234 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE--GAGLGHRFLKHI 234 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc--cccHHHHHHHHh
Confidence 357999999999999999999987754 899999999999999988 5678999999998643211 123455667778
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCCEEEEEeCCCCCCCccc----hh-HHhcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS----LD-FYELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~----~~-~~~~~~~~~~~iSA~~g~ 149 (1250)
+.++++++|+|+++..+..+ ..|.+.+.. .++|+++|+||+|+.+.... .+ +......+++++||+++.
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGE 314 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 89999999999986432222 345555554 36899999999999765432 11 112111368999999999
Q ss_pred chhHHHHHHHHhhCC
Q psy17091 150 GIKNFLENILTIELP 164 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~ 164 (1250)
|++++++++.+.+..
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987754
No 137
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.77 E-value=4.7e-18 Score=194.72 Aligned_cols=161 Identities=23% Similarity=0.264 Sum_probs=121.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC-eeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
..|+|+|.||||||||+|+|++.+ ..++++|+||.++....+.+++ .++++|||||+......... .....+++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~g----Lg~~flrh 232 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAG----LGHRFLKH 232 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccccc----HHHHHHHH
Confidence 579999999999999999999865 4567999999999999998877 89999999999654321111 12344677
Q ss_pred hccCcEEEEEecCCCC---CCHHHHH-HHHHHHH-----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 262 ILEANVVILLLDAQQN---ISAQDIN-IANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~---~~~~d~~-~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
+.++|++++|+|+++. .+.++.. +.+++.. .++|+++|+||+|+.+....++..+++.+.+ ..++++
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~----~~~vi~ 308 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKAL----GKPVFP 308 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHc----CCcEEE
Confidence 8899999999999864 2233333 3344433 3689999999999976544444444444433 257999
Q ss_pred eecCCCCChHHHHHHHHHHH
Q psy17091 333 ISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~ 352 (1250)
+||+++.|++++++++.+.+
T Consensus 309 iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 309 ISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEccCCcCHHHHHHHHHHHh
Confidence 99999999999999997654
No 138
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.77 E-value=9.2e-19 Score=189.34 Aligned_cols=151 Identities=26% Similarity=0.287 Sum_probs=114.9
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceecc------------------------------CCCCcceeeEEEEEEEcCeeEE
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITY------------------------------DTPGTTRDSIKSLFEYNNKKYI 233 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~------------------------------~~~gtT~~~~~~~~~~~~~~~~ 233 (1250)
+|+|+|++|+|||||+|+|+.....+.+ ..+|+|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999865544331 1279999999999999999999
Q ss_pred EEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEeccccCCcc--c
Q psy17091 234 LIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHN--Q 310 (1250)
Q Consensus 234 liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p-~iiv~NK~Dl~~~~--~ 310 (1250)
+|||||+. .|. .....+++.+|++++|+|++.+...++...+..+...+.| +|+|+||+|+.+.. .
T Consensus 81 liDTpG~~----------~~~-~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~ 149 (208)
T cd04166 81 IADTPGHE----------QYT-RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred EEECCcHH----------HHH-HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHH
Confidence 99999983 222 1234567899999999999999888888877777777754 77799999997532 2
Q ss_pred hHHHHHHHHHHhccCC--CCeEEEeecCCCCChHHHH
Q psy17091 311 RKIIKNNIKKKLNFLS--FAMFNFISAIKLNNINSFM 345 (1250)
Q Consensus 311 ~~~~~~~l~~~l~~~~--~~~iv~iSA~~g~gv~~l~ 345 (1250)
.....++++..+..++ ..+++++||++|.|+++..
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 2334445554443333 3579999999999998654
No 139
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.77 E-value=4e-18 Score=204.09 Aligned_cols=155 Identities=28% Similarity=0.387 Sum_probs=122.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
++|+++|.||||||||+|+|++.+.+++++.|++|+|.....+.+++..+.+|||||+.+.. +.+.......+..++.+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~-~~ie~~gi~~~~~~~~~ 294 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD-DEVEKIGIERSREAIEE 294 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc-cHHHHHHHHHHHHHHHh
Confidence 58999999999999999999998888899999999999999999999999999999986432 22332333456677899
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccchhHHhcCCCCcEecccccCCchhHHHHHHHHhh
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
+|++++|+|++++.+..+..+... ..++|+++|+||+|+....... .....+++++||++|.|+++|++++.+.+
T Consensus 295 aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~---~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 295 ADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE---EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred CCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh---hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 999999999988765554333222 4578999999999997543322 22223679999999999999999998765
Q ss_pred C
Q psy17091 163 L 163 (1250)
Q Consensus 163 ~ 163 (1250)
.
T Consensus 370 ~ 370 (449)
T PRK05291 370 F 370 (449)
T ss_pred h
Confidence 3
No 140
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.77 E-value=7.3e-18 Score=200.33 Aligned_cols=155 Identities=28% Similarity=0.341 Sum_probs=121.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|+||||||||+|+|++...++++++||+|+|.....+.+++..+.+|||||+.+.. +.+.......+..+++.
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~-~~ie~~gi~~~~~~~~~ 282 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA-DFVERLGIEKSFKAIKQ 282 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch-hHHHHHHHHHHHHHHhh
Confidence 58999999999999999999998888899999999999999999999999999999986433 22222223456678899
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccchhHH-hcCCCCcEecccccCCchhHHHHHHHHh
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDFY-ELGIGNPHIISALYGNGIKNFLENILTI 161 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~-~~~~~~~~~iSA~~g~gi~~L~~~i~~~ 161 (1250)
+|++++|+|++++.+..+. +...+...++|+++|+||+|+... ...++. ..+. +++.+||++ .|++++++.+.+.
T Consensus 283 aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~~~~~~~~~~-~~~~vSak~-~gI~~~~~~L~~~ 358 (442)
T TIGR00450 283 ADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SLEFFVSSKVL-NSSNLSAKQ-LKIKALVDLLTQK 358 (442)
T ss_pred CCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-chhhhhhhcCC-ceEEEEEec-CCHHHHHHHHHHH
Confidence 9999999999887665554 555555568899999999998654 222222 2222 568999998 6999999888765
Q ss_pred h
Q psy17091 162 E 162 (1250)
Q Consensus 162 l 162 (1250)
+
T Consensus 359 i 359 (442)
T TIGR00450 359 I 359 (442)
T ss_pred H
Confidence 4
No 141
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=5e-18 Score=205.27 Aligned_cols=158 Identities=35% Similarity=0.455 Sum_probs=129.0
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
.+|+++|+||||||||+|+|++...+.+++.||+|++.....+.+++..+.+|||||+.... ..+.......+..++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD---DGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc---hhHHHHHHHHHHHHH
Confidence 47999999999999999999998888888999999999999999999999999999997632 112222334456778
Q ss_pred ccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChH
Q psy17091 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~ 342 (1250)
+.+|++++|+|++++.+..+..+..++.+.++|+++|+||+|+.+.. ....++. ..+...++++||++|.|++
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~---~~~~~~~----~lg~~~~~~iSa~~g~gv~ 151 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE---ADAYEFY----SLGLGEPYPISAEHGRGIG 151 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch---hhHHHHH----hcCCCCCEEEEeeCCCCHH
Confidence 99999999999999999999999999999999999999999975421 1111111 2233457899999999999
Q ss_pred HHHHHHHH
Q psy17091 343 SFMESINH 350 (1250)
Q Consensus 343 ~l~~~i~~ 350 (1250)
++++.+.+
T Consensus 152 ~l~~~I~~ 159 (435)
T PRK00093 152 DLLDAILE 159 (435)
T ss_pred HHHHHHHh
Confidence 99999876
No 142
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.77 E-value=7.9e-18 Score=174.99 Aligned_cols=148 Identities=20% Similarity=0.266 Sum_probs=110.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCccc--ccCCCcceeeeEEEEEEC-CEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALV--ANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v--~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.|+++|++|||||||+|+|++...... ...+++|.+.......+. +..+.+|||||+. ++...+..++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~---------~~~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE---------KFIKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH---------HHHHHHHhhh
Confidence 589999999999999999997643222 235678888887777776 7899999999964 3445566678
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCccc-------hhHHhc---CCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS-------LDFYEL---GIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~-p~ilv~NK~D~~~~~~~-------~~~~~~---~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|++++..........+++..+. |+++|+||+|+...... .+.+.. ...+++++||++|.
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 89999999999987655555454455555555 99999999999764311 222221 22478999999999
Q ss_pred chhHHHHHHHH
Q psy17091 150 GIKNFLENILT 160 (1250)
Q Consensus 150 gi~~L~~~i~~ 160 (1250)
|++++++.+.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999988753
No 143
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.77 E-value=1e-17 Score=210.32 Aligned_cols=164 Identities=18% Similarity=0.250 Sum_probs=130.5
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcch--hhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF--EVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~--~~~e~~~~~~~~ 259 (1250)
.++|+++|+||||||||+|+|+|.+. .++++||+|.+.....+.+++.++.+|||||+.+..... ...++... +..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~-~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA-CHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHH-HHH
Confidence 47899999999999999999999764 678999999999999999999999999999997754211 11222211 111
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCC
Q psy17091 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~ 339 (1250)
-....+|++++|+|+++. +++..++..+.+.++|+++|+||+|+.++.......+.+.+.++ .|++++||++|+
T Consensus 81 l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG----~pVvpiSA~~g~ 154 (772)
T PRK09554 81 ILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG----CPVIPLVSTRGR 154 (772)
T ss_pred HhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC----CCEEEEEeecCC
Confidence 123589999999999986 66677888888999999999999999765555555566666654 689999999999
Q ss_pred ChHHHHHHHHHHHh
Q psy17091 340 NINSFMESINHVYD 353 (1250)
Q Consensus 340 gv~~l~~~i~~~~~ 353 (1250)
|++++.+.+.+...
T Consensus 155 GIdeL~~~I~~~~~ 168 (772)
T PRK09554 155 GIEALKLAIDRHQA 168 (772)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988754
No 144
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.77 E-value=1.5e-17 Score=178.66 Aligned_cols=169 Identities=25% Similarity=0.333 Sum_probs=127.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCc-ceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHH--HH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSV--IK 257 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~--~~ 257 (1250)
..++|+++|.+|||||||+|+|++.+ ...+++.+|+|++...... +.++.+|||||+..........+.+.. ..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 46899999999999999999999875 5667788899887644332 478999999998543322222233321 12
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCC
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~ 337 (1250)
.+.....++++++|+|++.+.++.+..+.+++...++|+++++||+|+.+....+...+.+...+... ..+++++||++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~~Sa~~ 178 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DDEVILFSSLK 178 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CCceEEEEcCC
Confidence 23333456789999999988888887788888888999999999999987655555555565555433 46899999999
Q ss_pred CCChHHHHHHHHHHHh
Q psy17091 338 LNNINSFMESINHVYD 353 (1250)
Q Consensus 338 g~gv~~l~~~i~~~~~ 353 (1250)
|.|++++++.+.+.+.
T Consensus 179 ~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 179 KQGIDELRAAIAKWLA 194 (196)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999987764
No 145
>KOG1191|consensus
Probab=99.77 E-value=3.1e-18 Score=193.15 Aligned_cols=161 Identities=27% Similarity=0.378 Sum_probs=132.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
+.|+|+|+||||||||+|+|.+.+.++|++.||+|||.....++++|.++.|+||+|+-+...+..+..-..+....+..
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~ 348 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIER 348 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhh
Confidence 57999999999999999999999999999999999999999999999999999999998755566777777888899999
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhc------------CCCEEEEEeCCCCCCCccc-----hhHHhc---CCCCc-E
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKS------------GQPIVLVINKSENINSSIS-----LDFYEL---GIGNP-H 141 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~------------~~p~ilv~NK~D~~~~~~~-----~~~~~~---~~~~~-~ 141 (1250)
||++++|+|+-...+.++..+.+.+... ..|++++.||+|+...-.. ..+... +..++ .
T Consensus 349 advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~ 428 (531)
T KOG1191|consen 349 ADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVV 428 (531)
T ss_pred cCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccceEE
Confidence 9999999999776788887777777752 2689999999998765221 111111 11233 4
Q ss_pred ecccccCCchhHHHHHHHHhhC
Q psy17091 142 IISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 142 ~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
.+||++++|+..|.+++.+.+.
T Consensus 429 ~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 429 EVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred EeeechhhhHHHHHHHHHHHHH
Confidence 5999999999999999987654
No 146
>KOG2324|consensus
Probab=99.77 E-value=2.3e-18 Score=184.43 Aligned_cols=342 Identities=15% Similarity=0.183 Sum_probs=210.7
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCC-CC-CCC
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNL-IY-DGP 914 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~-~~-~~P 914 (1250)
.....+++.|-. .|..|....-..|- ..+.|+....+||++.|+ +|+.++|.|----.+.+.+|+... ++ ++|
T Consensus 61 ~l~~~mqs~Ga~-kIslp~ls~~~LWe---kTgRw~~~gsEl~rl~Dr-~gkq~cL~pThEE~iT~lmat~~~lsykqlP 135 (457)
T KOG2324|consen 61 LLDNEMQSGGAQ-KISLPILSSKELWE---KTGRWDAMGSELFRLHDR-KGKQMCLTPTHEEDITALMATYIPLSYKQLP 135 (457)
T ss_pred HHHHHHHhccCe-eEeecccChHHHHH---hcCcccccchhheEeecc-CCCEeccCCchHHHHHHHHHhcCccccccCc
Confidence 344445566776 78999988888886 677788889999999999 999999999666666677776433 34 899
Q ss_pred eeEEEEeceeecC-CCCCC--CCCceEEeeEEEecCCCchhc---hHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHH
Q psy17091 915 KRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPDID---AELIIMCSRLWKNLNLKNICLELNSIGNFNERKKY 988 (1250)
Q Consensus 915 ~r~yy~g~VfR~e-~~~~g--r~REf~Q~g~eiig~~~~~ad---aEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~ 988 (1250)
+++|++|+.||+| +|+.| |-|||++.|.+.|..+...|- .-+....+.+|+.+|++ |.-.=.++|.+.+...+
T Consensus 136 i~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~p-fVkv~AdsG~iGG~vSh 214 (457)
T KOG2324|consen 136 IRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQLGLP-FVKVWADSGDIGGEVSH 214 (457)
T ss_pred EEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeecccccCceeee
Confidence 9999999999999 88877 899999999999998876663 34555677899999994 44333344443332211
Q ss_pred HHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHH-HHHHHHHHHhhCCceEEEe
Q psy17091 989 CIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLD-HFYGIQKILNYNNISYKIN 1067 (1250)
Q Consensus 989 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~l~~~l~~~gi~i~~D 1067 (1250)
.-.+..-+.. +....|..|.-...-+.+. ++... ......+ .|.. ..++.|
T Consensus 215 Efhl~~~vgE--D~l~~C~~C~~s~n~e~~~---------------~sk~~--~Cp~C~~~~L~~------~~~IEV--- 266 (457)
T KOG2324|consen 215 EFHLIHPVGE--DTLMSCPSCGYSKNSEDLD---------------LSKIA--SCPKCNEGRLTK------TKSIEV--- 266 (457)
T ss_pred eEeccCccCc--cceeecCcCCccCchhhhc---------------CCccc--cCCcccCCCccc------ccceEE---
Confidence 1000000000 0001122221000000000 00000 0000000 1110 112333
Q ss_pred CCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeE-EEEEeHHHHHHHHHHcc------CCCCCCC
Q psy17091 1068 TKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPAS-GFAIGIERLIELIKKIN------INHNFSH 1140 (1250)
Q Consensus 1068 ~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pav-Gfsi~lerl~~~l~~~~------~~~~~~~ 1140 (1250)
++.||-|..|.-- .+. ..++.-|++..-.. .++||+.||+.+..+.. .||...+
T Consensus 267 -----gHtF~LG~kYS~~---lna-----------~f~~~~gKpe~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iA 327 (457)
T KOG2324|consen 267 -----GHTFLLGTKYSKP---LNA-----------KFVNVEGKPEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIA 327 (457)
T ss_pred -----EEEEEeccccccc---cCc-----------eeeeecCCcceEEecceeccHHHHHHHHHHHhccccccccccccC
Confidence 5566666654221 111 00111122222222 58899999999988732 5999999
Q ss_pred CceE-EEEEcChHHHHHHHHHHHHHHHcCC------EEEEeeccccccccHHHHHHHHHHcCCCEEEEEcc-CcccCCeE
Q psy17091 1141 QCDI-YIVHVGKEAELKAFVLSENLRTLGL------KVILNCVFNNIHESFKSQMKRANASNANFAAIIGE-NEIINNTL 1212 (1250)
Q Consensus 1141 ~~~v-~V~~~~~~~~~~a~~~a~~Lr~~gi------~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~-~e~~~g~v 1212 (1250)
|.+| +|.|........+.+++.+|-...+ .+.+|++ ...++|++++.|++.|+||+||||. .-..+..+
T Consensus 328 Py~vcli~pk~~~~~q~~~ev~~el~~~~~~~~l~~~iLlddr---~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~ 404 (457)
T KOG2324|consen 328 PYKVCLIGPKKGSKSQRAQEVISELLNDEAVGNLHGEILLDDR---EELTIGKRIKDANRLGIPFVIVVGNSASWDNPEI 404 (457)
T ss_pred cceeEEeccCCcchhhhHHHHHHHhhcchhhhhhccceeccch---hhhhhHHhhhhHHhcCCCEEEEEcccccCCCceE
Confidence 9999 5555555445556677777765322 2344443 5678999999999999999999994 55567889
Q ss_pred EEEEcCCCCCCCCCcceeeehHHHHHHH
Q psy17091 1213 IIKDLRNKYEDPTLKQISISFKDAENYF 1240 (1250)
Q Consensus 1213 ~vk~~~~~~~~~~~~e~~v~~~el~~~l 1240 (1250)
+|+-..++ +..+...+.+...+
T Consensus 405 EV~~~~~g------e~~~l~~~~~~~l~ 426 (457)
T KOG2324|consen 405 EVRTIRWG------ESAELDKDGFMKLL 426 (457)
T ss_pred EEEEeecC------ceeccchhhHHHHh
Confidence 99998887 65666666555444
No 147
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.77 E-value=5.8e-18 Score=177.18 Aligned_cols=162 Identities=28% Similarity=0.395 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHHhcCCCCcEeccc
Q psy17091 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYELGIGNPHIISA 145 (1250)
Q Consensus 69 ~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~~iSA 145 (1250)
+++...++...+++||++++|+|++.+....+..+...+ .++|+++|+||+|+...... .+++......++.+||
T Consensus 6 ~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa 83 (171)
T cd01856 6 MAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNA 83 (171)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEEC
Confidence 456778889999999999999999887666555555544 36899999999999754332 2334443446799999
Q ss_pred ccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEE
Q psy17091 146 LYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLF 225 (1250)
Q Consensus 146 ~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~ 225 (1250)
+++.|+++|.+.+...++..... .........++++++|.+|||||||+|+|.+.+...+++.+|||++.....+
T Consensus 84 ~~~~gi~~L~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~ 158 (171)
T cd01856 84 KSGKGVKKLLKAAKKLLKDIEKL-----KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI 158 (171)
T ss_pred CCcccHHHHHHHHHHHHHHHhhh-----hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe
Confidence 99999999999998876431110 0000112358999999999999999999999887788899999998766544
Q ss_pred EEcCeeEEEEecCCC
Q psy17091 226 EYNNKKYILIDTAGI 240 (1250)
Q Consensus 226 ~~~~~~~~liDTpG~ 240 (1250)
+ ..+.+|||||+
T Consensus 159 --~-~~~~~iDtpG~ 170 (171)
T cd01856 159 --S-PGIYLLDTPGI 170 (171)
T ss_pred --c-CCEEEEECCCC
Confidence 2 67899999997
No 148
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.76 E-value=1.1e-17 Score=176.84 Aligned_cols=156 Identities=24% Similarity=0.268 Sum_probs=113.8
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceec--------------cCCCCcceeeEEEEEEE-----cCeeEEEEecCCCCCCC
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVIT--------------YDTPGTTRDSIKSLFEY-----NNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~--------------~~~~gtT~~~~~~~~~~-----~~~~~~liDTpG~~~~~ 244 (1250)
+|+++|.+|||||||+++|++....+. ....|+|.+.....+.+ .+..+.+|||||+.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 589999999999999999987432111 12346666655554544 3456789999999442
Q ss_pred cchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhcc
Q psy17091 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF 324 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~ 324 (1250)
. .....+++.+|++++|+|++++.+.++...+..+...++|+++|+||+|+.+.. ..+..+++.+.++.
T Consensus 81 ---------~-~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~ 149 (179)
T cd01890 81 ---------S-YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD-PERVKQQIEDVLGL 149 (179)
T ss_pred ---------H-HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC-HHHHHHHHHHHhCC
Confidence 1 123356788999999999999888888877777777889999999999986432 22333455554442
Q ss_pred CCCCeEEEeecCCCCChHHHHHHHHHHH
Q psy17091 325 LSFAMFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 325 ~~~~~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
...+++++||++|.|++++++++.+.+
T Consensus 150 -~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 150 -DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred -CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 234689999999999999999997664
No 149
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.76 E-value=1.1e-17 Score=178.99 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=114.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+|+|.+|||||||++++++.+.... ..|.++.+.....+.+++. .+.+|||||+.+.... ..+++.. ....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~--~~~e~~~-~~~~ 76 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT--AGQEWMD-PRFR 76 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc--chhHHHH-HHHh
Confidence 4899999999999999999998765332 4455555554455667774 5678999998654211 1122221 2335
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEe
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
+++.+|++++|+|++++.+.+... +...+.+ .++|+++|+||+|+.+..... .+.+.........++++++
T Consensus 77 ~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 77 GLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP--RHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc--HHHHHHHHHHhcCCcEEEe
Confidence 678999999999999875554433 3334432 468999999999996532111 1122222221234789999
Q ss_pred ecCCCCChHHHHHHHHHHHhhcccc
Q psy17091 334 SAIKLNNINSFMESINHVYDSSIIH 358 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~~~ 358 (1250)
||++|.|++++|+.+.+....+...
T Consensus 155 Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 155 SAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhhccCCC
Confidence 9999999999999998877665544
No 150
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.76 E-value=3.7e-18 Score=188.93 Aligned_cols=140 Identities=24% Similarity=0.278 Sum_probs=123.2
Q ss_pred HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccC----CcccccCCCCcHHHHHHHHHcCCC
Q psy17091 835 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELN----GDNLSLRPEGTASVIRSVIENNLI 910 (1250)
Q Consensus 835 i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~----g~~l~LRpD~T~~iaR~~a~~~~~ 910 (1250)
.+.+.+.+.++|+. .|.+|..+..+.+- .+.+.+...++||.+.|. + |+.++||||.|+|++|+++....+
T Consensus 9 ~~~~~~~~~~~G~~-ei~~P~l~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~LrP~~~~~i~~~~~~~~~~ 83 (235)
T cd00670 9 ERFLDDRMAEYGYQ-EILFPFLAPTVLFF---KGGHLDGYRKEMYTFEDK-GRELRDTDLVLRPAACEPIYQIFSGEILS 83 (235)
T ss_pred HHHHHHHHHHcCCE-EEECCeEcCHHHHh---hcCCcccchhhcCeeccC-cccccCCeEEEecCCCHHHHHHHhccCcc
Confidence 45677888999998 79999999998874 334667788899999997 6 799999999999999999987665
Q ss_pred -CCCCeeEEEEeceeecCCCC---CCCCCceEEeeEEEecCC--CchhchHHHHHHHHHHHHCCCCceEEEeCCCc
Q psy17091 911 -YDGPKRLWYSGPMFRHERPQ---YGRYRQFYQIGVEAIGFP--GPDIDAELIIMCSRLWKNLNLKNICLELNSIG 980 (1250)
Q Consensus 911 -~~~P~r~yy~g~VfR~e~~~---~gr~REf~Q~g~eiig~~--~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~ 980 (1250)
.++|+|+||+|+|||+|.++ .+|.|||+|.|+|+||.+ +..++.|++.++.++|+.+|+ ++.+.+++.+
T Consensus 84 ~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl-~~~i~~~~~~ 158 (235)
T cd00670 84 YRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGL-PVRVVVADDP 158 (235)
T ss_pred chhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEccCh
Confidence 47899999999999999776 579999999999999988 777899999999999999999 6999999966
No 151
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.76 E-value=7.5e-18 Score=189.73 Aligned_cols=166 Identities=25% Similarity=0.362 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHHhcCCCCcEecccc
Q psy17091 70 HEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYELGIGNPHIISAL 146 (1250)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~~iSA~ 146 (1250)
.+..+++...++.+|+||+|+|++.+.+..+..+.+.+. ++|+++|+||+|+.+.... .+++......++++||+
T Consensus 9 ~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~ 86 (276)
T TIGR03596 9 AKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAK 86 (276)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECC
Confidence 466788888999999999999999887777777777663 6899999999999654322 22332211267999999
Q ss_pred cCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEE
Q psy17091 147 YGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFE 226 (1250)
Q Consensus 147 ~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~ 226 (1250)
++.|+++|.+.+.+.+++..... .........++++++|.||||||||+|+|++.....+++.||+|+..+...+
T Consensus 87 ~~~gi~~L~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~- 161 (276)
T TIGR03596 87 KGKGVKKIIKAAKKLLKEKNEKL----KAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL- 161 (276)
T ss_pred CcccHHHHHHHHHHHHHHhhhhh----hhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-
Confidence 99999999999988775432110 0000112468999999999999999999999888888999999998754333
Q ss_pred EcCeeEEEEecCCCCCCC
Q psy17091 227 YNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 227 ~~~~~~~liDTpG~~~~~ 244 (1250)
+..+.++||||+....
T Consensus 162 --~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 162 --SDGLELLDTPGILWPK 177 (276)
T ss_pred --CCCEEEEECCCcccCC
Confidence 3578999999996553
No 152
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=1.5e-17 Score=177.25 Aligned_cols=159 Identities=25% Similarity=0.303 Sum_probs=124.6
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceecc---------------CCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITY---------------DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFE 248 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~---------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 248 (1250)
+|+++|.+|+|||||+|+|++....... ...++|.+.....+.+.+..+.+|||||+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 4899999999999999999976544321 23466777666777778889999999998422
Q ss_pred hHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccC---
Q psy17091 249 VIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL--- 325 (1250)
Q Consensus 249 ~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~--- 325 (1250)
. .....+++.+|++++|+|++++.+.++..++..+...++|+++|+||+|+..+.......+++.+.+...
T Consensus 76 -----~-~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 76 -----S-SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred -----H-HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence 1 1233556789999999999998888888888888888999999999999987555555555665555432
Q ss_pred ----------CCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 326 ----------SFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 326 ----------~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
...+++++||++|.|++++++++...++
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3578999999999999999999987653
No 153
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.76 E-value=6.8e-18 Score=176.81 Aligned_cols=155 Identities=25% Similarity=0.335 Sum_probs=114.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE-EEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.|+++|++|||||||+|+|++.+. .++..|++|++...+.+.+.+. .+.+|||||+...... .+.+...+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE--GKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc--cCCchHHHHHHHHh
Confidence 589999999999999999998765 4778888999988888888776 9999999998532211 01233444555678
Q ss_pred CCEEEEEEeCCCC-CChhh-HHHHHHHHh-----cCCCEEEEEeCCCCCCCccc----hhHHhc-CCCCcEecccccCCc
Q psy17091 83 SDIIIFIVDGRQG-LVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS----LDFYEL-GIGNPHIISALYGNG 150 (1250)
Q Consensus 83 ad~il~v~D~~~~-~~~~~-~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~----~~~~~~-~~~~~~~iSA~~g~g 150 (1250)
+|++++|+|++++ .+... ..+.+.+.. .++|+++|+||+|+.+.... .++... ...+++++||+++.|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 9999999999875 22222 334444443 26899999999998765443 233333 134679999999999
Q ss_pred hhHHHHHHHHh
Q psy17091 151 IKNFLENILTI 161 (1250)
Q Consensus 151 i~~L~~~i~~~ 161 (1250)
++++++.+.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 154
>PRK11058 GTPase HflX; Provisional
Probab=99.76 E-value=1.2e-17 Score=197.13 Aligned_cols=161 Identities=20% Similarity=0.252 Sum_probs=121.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe-eEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
.+|+++|.||||||||+|+|++.+.. +++.+|+|+|.....+.+.+. ++.+|||||+.+.. ..+.++.|. .++..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~~lve~f~--~tl~~ 273 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLVAAFK--ATLQE 273 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-CHHHHHHHH--HHHHH
Confidence 68999999999999999999998766 679999999998888888765 89999999995431 234455553 45677
Q ss_pred hccCcEEEEEecCCCCCCHHHHH----HHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCC
Q psy17091 262 ILEANVVILLLDAQQNISAQDIN----IANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~----~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~ 337 (1250)
++.||++++|+|++++.+..+.. ++..+...++|+++|+||+|+.+.... .. .. . . .....++++||++
T Consensus 274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~-~~-~-~---~~~~~~v~ISAkt 346 (426)
T PRK11058 274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-RI-DR-D-E---ENKPIRVWLSAQT 346 (426)
T ss_pred hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-HH-HH-H-h---cCCCceEEEeCCC
Confidence 89999999999999986666543 333333347999999999999753211 11 11 1 1 1122358899999
Q ss_pred CCChHHHHHHHHHHHhh
Q psy17091 338 LNNINSFMESINHVYDS 354 (1250)
Q Consensus 338 g~gv~~l~~~i~~~~~~ 354 (1250)
|.|+++|++++.+.+..
T Consensus 347 G~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 347 GAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999887743
No 155
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.76 E-value=2.5e-17 Score=169.74 Aligned_cols=155 Identities=33% Similarity=0.473 Sum_probs=121.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|++|+|||||+|+|++...+.+.+.+++|.+.......+.+..+.+|||||+.+.. ..............+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE-DEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc-chHHHHHHHHHHHHHhh
Confidence 47999999999999999999998877788899999999888888888999999999986543 22222333455667789
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccchhHHhcCCCCcEecccccCCchhHHHHHHHHhh
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
+|++++|+|++.+.+..+...... ..++|+++|+||+|+...... .......+++++||+++.|++++++++...+
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL--LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc--ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 999999999997666655443333 467899999999998765543 2222234789999999999999999987643
No 156
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.76 E-value=4.3e-18 Score=175.19 Aligned_cols=150 Identities=28% Similarity=0.392 Sum_probs=113.0
Q ss_pred CEEEEEEeCCCCCChhhHHHH-HHHHhcCCCEEEEEeCCCCCCCccch----hHHhcCCCCcEecccccCCchhHHHHHH
Q psy17091 84 DIIIFIVDGRQGLVEQDKLIT-NFLRKSGQPIVLVINKSENINSSISL----DFYELGIGNPHIISALYGNGIKNFLENI 158 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~~~~~-~~l~~~~~p~ilv~NK~D~~~~~~~~----~~~~~~~~~~~~iSA~~g~gi~~L~~~i 158 (1250)
|++|+|+|++++....+..+. ..+...++|+++|+||+|+...+... .+.......++++||+++.|+++|.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 789999999987766666665 46666789999999999997544321 2223334467999999999999999998
Q ss_pred HHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecC
Q psy17091 159 LTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238 (1250)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTp 238 (1250)
.+.+.+..+.. ..........+++++|.||||||||+|+|++.....+++.+|||++.....+ +..+.|+|||
T Consensus 81 ~~~~~~~~~~~----~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtP 153 (155)
T cd01849 81 TKQTNSNLKSY----AKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTP 153 (155)
T ss_pred HHHhHHHHHHH----HhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECC
Confidence 76543221100 0000113468899999999999999999999888888899999999876544 4679999999
Q ss_pred CC
Q psy17091 239 GI 240 (1250)
Q Consensus 239 G~ 240 (1250)
|+
T Consensus 154 G~ 155 (155)
T cd01849 154 GI 155 (155)
T ss_pred CC
Confidence 96
No 157
>KOG0084|consensus
Probab=99.76 E-value=1.3e-17 Score=167.29 Aligned_cols=152 Identities=21% Similarity=0.210 Sum_probs=121.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
.+||+|+|.+|||||.|..|+.+.... .+...++..|.....++++|+ .++||||+|++ +|+..+..+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~-e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE---------RFrtit~sy 78 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFT-ESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE---------RFRTITSSY 78 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcc-hhhcceeeeEEEEEEeeecceEEEEEeeeccccH---------HHhhhhHhh
Confidence 369999999999999999999987643 445556778888888888886 78999999975 888999999
Q ss_pred hhcCCEEEEEEeCCCCCChhhHHHHHHHHh------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEeccccc
Q psy17091 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~~~~~~~l~~------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~ 147 (1250)
+++|++||+|+|.++ ..+...+..|+.+ .+.|.++|+||||+.+.... .+|. .++....+++||+.
T Consensus 79 YR~ahGii~vyDiT~--~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~ 156 (205)
T KOG0084|consen 79 YRGAHGIIFVYDITK--QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKD 156 (205)
T ss_pred ccCCCeEEEEEEccc--HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCC
Confidence 999999999999997 3344445555554 35699999999999877665 2343 44553479999999
Q ss_pred CCchhHHHHHHHHhhCCc
Q psy17091 148 GNGIKNFLENILTIELPY 165 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~~ 165 (1250)
+.|+++.|..+...+...
T Consensus 157 ~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 157 STNVEDAFLTLAKELKQR 174 (205)
T ss_pred ccCHHHHHHHHHHHHHHh
Confidence 999999999998766543
No 158
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.76 E-value=7.7e-18 Score=190.60 Aligned_cols=165 Identities=27% Similarity=0.410 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHHh-cCCCCcEeccc
Q psy17091 70 HEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYE-LGIGNPHIISA 145 (1250)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~~-~~~~~~~~iSA 145 (1250)
.+..++....+..+|+||+|+|++.+.+..+..+.+.+. ++|+++|+||+|+.+.... .+++. .+ ..++++||
T Consensus 12 ~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~-~~vi~vSa 88 (287)
T PRK09563 12 AKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEYFEEQG-IKALAINA 88 (287)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHHHHHcC-CeEEEEEC
Confidence 466777888899999999999999887777777766664 7899999999999654322 23332 23 25789999
Q ss_pred ccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEE
Q psy17091 146 LYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLF 225 (1250)
Q Consensus 146 ~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~ 225 (1250)
+++.|+++|.+.+.+.++...... .........++++++|.||||||||+|+|++.+...+++.||+|++....
T Consensus 89 ~~~~gi~~L~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~-- 162 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLKEKNERR----KAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI-- 162 (287)
T ss_pred CCcccHHHHHHHHHHHHHHHHhhh----hhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE--
Confidence 999999999999988775432110 00001134689999999999999999999999888899999999997533
Q ss_pred EEcCeeEEEEecCCCCCCC
Q psy17091 226 EYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 226 ~~~~~~~~liDTpG~~~~~ 244 (1250)
.. +..+.|+||||+....
T Consensus 163 ~~-~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 163 KL-GKGLELLDTPGILWPK 180 (287)
T ss_pred Ee-CCcEEEEECCCcCCCC
Confidence 22 4579999999997654
No 159
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=8.1e-18 Score=196.45 Aligned_cols=161 Identities=25% Similarity=0.351 Sum_probs=121.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC-EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.-|+|||+||||||||+|+|++.+. +++++|++|+.+..+.+.+.+ +.+.++||||+....... ..+...+..++.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~--~~Lg~~~l~~i~ 236 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG--AGLGIRFLKHLE 236 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch--hhHHHHHHHHHH
Confidence 4799999999999999999998875 699999999999999998875 579999999986432111 123344556789
Q ss_pred cCCEEEEEEeCCC---C-CChhhHHHHHHHHhc-----CCCEEEEEeCCCCCCCccc----hhHHh-cCCC-CcEecccc
Q psy17091 82 ESDIIIFIVDGRQ---G-LVEQDKLITNFLRKS-----GQPIVLVINKSENINSSIS----LDFYE-LGIG-NPHIISAL 146 (1250)
Q Consensus 82 ~ad~il~v~D~~~---~-~~~~~~~~~~~l~~~-----~~p~ilv~NK~D~~~~~~~----~~~~~-~~~~-~~~~iSA~ 146 (1250)
.+|++++|+|++. . .......+.+.+... ++|+++|+||+|+...... .++.. .+.. .++++||+
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECC
Confidence 9999999999872 1 122234455555553 5899999999998755433 12222 2332 68999999
Q ss_pred cCCchhHHHHHHHHhhCCcc
Q psy17091 147 YGNGIKNFLENILTIELPYK 166 (1250)
Q Consensus 147 ~g~gi~~L~~~i~~~l~~~~ 166 (1250)
++.|+++|++.+.+.+++.+
T Consensus 317 tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred CCcCHHHHHHHHHHHhhhCc
Confidence 99999999999999887654
No 160
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.76 E-value=2.8e-17 Score=171.69 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=117.2
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc---CeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN---NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
.|+|+|.+|||||||+|+|++..... ...+++|.+.....+..+ +..+.+|||||+.. +.... ..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~-~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA----------FTNMR-AR 69 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH----------HHHHH-HH
Confidence 48999999999999999999865433 356678877765666664 67899999999832 22222 23
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHh-----ccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL-----NFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l-----~~~~~~~iv~iSA 335 (1250)
.++.+|++++|+|++++...+....+..+...++|+++|+||+|+.+.. .....+.+.... ......+++++||
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeec
Confidence 5578999999999999887888888888888899999999999987432 222223332221 1122468999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q psy17091 336 IKLNNINSFMESINHVYD 353 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (1250)
++|.|++++++++.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999977643
No 161
>KOG1423|consensus
Probab=99.75 E-value=1.1e-17 Score=177.27 Aligned_cols=177 Identities=20% Similarity=0.285 Sum_probs=132.8
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhh-HHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEV-IEKFSVIKT 258 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~-~e~~~~~~~ 258 (1250)
.+.+.|+++|.||||||||.|.++|.+.+.+|..+.||+..+.+.+..+..+++++||||+..+...... .+.-.....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 4579999999999999999999999999999999999999999999999999999999999776543321 111112244
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHHHHHHHHH-cCCcEEEEEeccccCCccc-------------hHHHHHHHHHHhcc
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDINIANFIYE-SGRSLIVCVNKWDSIIHNQ-------------RKIIKNNIKKKLNF 324 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~-------------~~~~~~~l~~~l~~ 324 (1250)
..++..||++++|+|++..-+.-.-.++..+.+ ...|-++|+||+|...... .....-++.+.+..
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~ 229 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTD 229 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhcc
Confidence 578889999999999996433444455555555 4699999999999875321 11112223333322
Q ss_pred CC-------------CCeEEEeecCCCCChHHHHHHHHHHHhhcc
Q psy17091 325 LS-------------FAMFNFISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 325 ~~-------------~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
.+ +-.+|++||++|.|+++|.+++....+...
T Consensus 230 ~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 230 VPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred CCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 22 345999999999999999999988876544
No 162
>PRK04213 GTP-binding protein; Provisional
Probab=99.75 E-value=3.2e-17 Score=176.84 Aligned_cols=167 Identities=28% Similarity=0.353 Sum_probs=115.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcch-hhHHHHHHHH--
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIK-- 257 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~e~~~~~~-- 257 (1250)
..++|+++|.+|||||||+|+|.+.. ..++..||+|++.... .+. ++.+|||||+....... +..+.+....
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 35899999999999999999999876 4566889999876533 333 68999999974322111 1133443211
Q ss_pred H-HHhhccCcEEEEEecCCCC-----------CCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccC
Q psy17091 258 T-LKSILEANVVILLLDAQQN-----------ISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL 325 (1250)
Q Consensus 258 ~-~~~~~~ad~vllviD~~~~-----------~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~ 325 (1250)
. ......++++++|+|++.. ....+..++..+...++|+++|+||+|+.+.. .+..+++.+.++..
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~ 160 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGLY 160 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcCC
Confidence 1 1234567899999998642 12345667777777899999999999997543 22334444444321
Q ss_pred -C----CCeEEEeecCCCCChHHHHHHHHHHHhhc
Q psy17091 326 -S----FAMFNFISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 326 -~----~~~iv~iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
. ..+++++||++| |+++++++|.+.+...
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 1 136899999999 9999999998876543
No 163
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=2e-17 Score=193.84 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=121.1
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc-CeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
..|+++|.||||||||+|+|++.+. .++++|+||.++....+.++ +..+++|||||+....+... -.....+++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~----gLg~~fLrh 233 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV----GLGHQFLRH 233 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccc----hHHHHHHHH
Confidence 3799999999999999999998764 45689999999999888887 78999999999965432111 112345677
Q ss_pred hccCcEEEEEecCCCC---CCH-HHHHHHHHHHH-----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 262 ILEANVVILLLDAQQN---ISA-QDINIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~---~~~-~d~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
+.+++++++|+|++.. -+. ....+.+++.. .++|++||+||+|+.+. .+..+.+.+.+. .++++
T Consensus 234 ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~---~e~l~~l~~~l~----~~i~~ 306 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA---EENLEEFKEKLG----PKVFP 306 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC---HHHHHHHHHHhC----CcEEE
Confidence 8899999999999753 222 23345555544 37999999999998432 222333444443 57999
Q ss_pred eecCCCCChHHHHHHHHHHHhhc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
+||+++.|+++|++++.+.+...
T Consensus 307 iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 307 ISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999998887654
No 164
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.75 E-value=1.3e-17 Score=172.21 Aligned_cols=150 Identities=30% Similarity=0.408 Sum_probs=113.0
Q ss_pred EEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEE
Q psy17091 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDII 86 (1250)
Q Consensus 7 lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~i 86 (1250)
++|.+|||||||+|++++.. ..++.++++|++.....+++++..+.+|||||+...........+....... ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 58999999999999999876 4578889999999988899999999999999986433211122233332222 599999
Q ss_pred EEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCchhHHHHHHHHh
Q psy17091 87 IFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLENILTI 161 (1250)
Q Consensus 87 l~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi~~L~~~i~~~ 161 (1250)
++|+|+.+. .....+...+...++|+++|+||+|+.+.... ..+. .++. +++++||.+|.|++++++.+.+.
T Consensus 79 i~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 79 VNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGV-PVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred EEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCC-CeEEEEccCCCCHHHHHHHHHHH
Confidence 999999863 23344555666678999999999999765433 2222 2343 78999999999999999998764
No 165
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.75 E-value=1.4e-17 Score=171.72 Aligned_cols=148 Identities=26% Similarity=0.354 Sum_probs=113.9
Q ss_pred HHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccch---hHHhcCCCCcEecccccCCchh
Q psy17091 76 TKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISL---DFYELGIGNPHIISALYGNGIK 152 (1250)
Q Consensus 76 ~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~~---~~~~~~~~~~~~iSA~~g~gi~ 152 (1250)
....++++|++++|+|++++....+..+.+++...++|+++|+||+|+.+..... ++......+++++||+++.|++
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~ 85 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTK 85 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHH
Confidence 4445567999999999988766666677777777789999999999986433221 1222222367999999999999
Q ss_pred HHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeE
Q psy17091 153 NFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY 232 (1250)
Q Consensus 153 ~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~ 232 (1250)
+|++.+.+.++.. ....+++++|.+|+|||||+|++.+.....+++.+|+|++.... . .+..+
T Consensus 86 ~L~~~l~~~~~~~--------------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~--~-~~~~~ 148 (156)
T cd01859 86 ILRRTIKELAKID--------------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLV--K-ITSKI 148 (156)
T ss_pred HHHHHHHHHHhhc--------------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEE--E-cCCCE
Confidence 9999998877532 12577899999999999999999988777778899998775322 2 24579
Q ss_pred EEEecCCC
Q psy17091 233 ILIDTAGI 240 (1250)
Q Consensus 233 ~liDTpG~ 240 (1250)
.+|||||+
T Consensus 149 ~~~DtpGi 156 (156)
T cd01859 149 YLLDTPGV 156 (156)
T ss_pred EEEECcCC
Confidence 99999996
No 166
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=1.3e-17 Score=197.13 Aligned_cols=158 Identities=20% Similarity=0.270 Sum_probs=119.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
..|+|||.||||||||+|+|++.+.. ++++|++|+++..+.+.+.+..|+||||||+.+...+ .+.+...++..+..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~--g~gLg~~fLrhier 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE--GKGLGLDFLRHIER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccch--hhHHHHHHHHHHHh
Confidence 57999999999999999999988765 7899999999999999999999999999998643211 12344456667889
Q ss_pred CCEEEEEEeCCCC------CChhh---HHHHHHHH----------hcCCCEEEEEeCCCCCCCccch----hHH-hcCCC
Q psy17091 83 SDIIIFIVDGRQG------LVEQD---KLITNFLR----------KSGQPIVLVINKSENINSSISL----DFY-ELGIG 138 (1250)
Q Consensus 83 ad~il~v~D~~~~------~~~~~---~~~~~~l~----------~~~~p~ilv~NK~D~~~~~~~~----~~~-~~~~~ 138 (1250)
+|++|+|+|++.. +...+ .++..+.. ..++|+++|+||+|+.+..... +.+ ..+.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~- 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGW- 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCC-
Confidence 9999999999741 11111 12333321 2468999999999997654331 122 3344
Q ss_pred CcEecccccCCchhHHHHHHHHhhCC
Q psy17091 139 NPHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
+++++||+++.|+++|++++.+.+..
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999887654
No 167
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.75 E-value=9.9e-18 Score=178.89 Aligned_cols=147 Identities=29% Similarity=0.321 Sum_probs=111.6
Q ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHH------hcC--CCC
Q psy17091 72 MTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY------ELG--IGN 139 (1250)
Q Consensus 72 ~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~------~~~--~~~ 139 (1250)
+......+++.+|++++|+|+++........+ +....++|+++|+||+|+...... ..+. ..+ ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKD 101 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCccc
Confidence 56777888899999999999987554444444 222357899999999999754332 1121 122 236
Q ss_pred cEecccccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCc--------ceecc
Q psy17091 140 PHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN--------RVITY 211 (1250)
Q Consensus 140 ~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~--------~~~~~ 211 (1250)
++++||++|.|+++|++.+.+.++. +.+++++|.||||||||+|+|++.. ...++
T Consensus 102 i~~vSA~~~~gi~eL~~~l~~~l~~-----------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~ 164 (190)
T cd01855 102 VILISAKKGWGVEELINAIKKLAKK-----------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTS 164 (190)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc-----------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccC
Confidence 7999999999999999999876641 2469999999999999999999754 24568
Q ss_pred CCCCcceeeEEEEEEEcCeeEEEEecCCC
Q psy17091 212 DTPGTTRDSIKSLFEYNNKKYILIDTAGI 240 (1250)
Q Consensus 212 ~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 240 (1250)
..||||++.....+. ..+.+|||||+
T Consensus 165 ~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 165 PIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 899999998766552 36899999996
No 168
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=1.8e-17 Score=194.24 Aligned_cols=159 Identities=26% Similarity=0.331 Sum_probs=121.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC-CEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
..|++||.||||||||+|+|++.+.. ++++|++|+++..+.+.+. +..+.+|||||+...... ...+...++..+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~--~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE--GVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc--cchHHHHHHHHHh
Confidence 47999999999999999999988765 6889999999999998887 789999999998643211 1234455667788
Q ss_pred cCCEEEEEEeCCCC----CChhhHHHHHHHHh-----cCCCEEEEEeCCCCCCCccc-hhHH-hcCCCCcEecccccCCc
Q psy17091 82 ESDIIIFIVDGRQG----LVEQDKLITNFLRK-----SGQPIVLVINKSENINSSIS-LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 82 ~ad~il~v~D~~~~----~~~~~~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~-~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
.++++++|+|++.. .......+.++|.. .++|+++|+||+|+...... .++. .++ .+++++||+++.|
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~-~~i~~iSA~tgeG 314 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG-PKVFPISALTGQG 314 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC-CcEEEEeCCCCCC
Confidence 89999999999742 11222445566654 36899999999998543322 2333 233 3689999999999
Q ss_pred hhHHHHHHHHhhCCc
Q psy17091 151 IKNFLENILTIELPY 165 (1250)
Q Consensus 151 i~~L~~~i~~~l~~~ 165 (1250)
+++|++.+.+.+...
T Consensus 315 I~eL~~~L~~~l~~~ 329 (424)
T PRK12297 315 LDELLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999998877543
No 169
>KOG1423|consensus
Probab=99.75 E-value=1.4e-17 Score=176.58 Aligned_cols=163 Identities=25% Similarity=0.388 Sum_probs=132.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchh---hHHHHHHHHHHHHHh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK---KGIMHEMTKQTKQAI 80 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~ 80 (1250)
.|++||.||||||||.|.++|.+.+.++..+.|||....+.+.-+..++.++||||+..... ..+...+.+....++
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~ 153 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAA 153 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHH
Confidence 79999999999999999999999999999999999999999988889999999999875532 233344555678899
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHh-cCCCEEEEEeCCCCCCCccc-----------------hhHH---------
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRK-SGQPIVLVINKSENINSSIS-----------------LDFY--------- 133 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~-~~~p~ilv~NK~D~~~~~~~-----------------~~~~--------- 133 (1250)
..||++++|+|++..-.+....++..++. +..|-++|.||+|....... .+..
T Consensus 154 q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~ 233 (379)
T KOG1423|consen 154 QNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSD 233 (379)
T ss_pred hhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcc
Confidence 99999999999986445556667777776 57899999999998654322 0111
Q ss_pred --------hcCCCCcEecccccCCchhHHHHHHHHhhCCcc
Q psy17091 134 --------ELGIGNPHIISALYGNGIKNFLENILTIELPYK 166 (1250)
Q Consensus 134 --------~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 166 (1250)
..+|..+|++||++|+|+++|.+.+....++++
T Consensus 234 ~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 234 EKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred cccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 013556899999999999999999999887664
No 170
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.75 E-value=1.7e-17 Score=190.04 Aligned_cols=156 Identities=26% Similarity=0.377 Sum_probs=118.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC-EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
..|+|||.||||||||+|+|++.+.. ++++|++|+++..+.+.+.+ ..+.||||||+.+...+ ...+..++...++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~--~~gLg~~flrhie 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE--GAGLGHRFLKHIE 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc--cccHHHHHHHHHH
Confidence 57999999999999999999987654 88999999999999998887 89999999998643211 1234455667788
Q ss_pred cCCEEEEEEeCCCC---CC-hhhHHHHHHHHh-----cCCCEEEEEeCCCCCCCccc---hh-HH-hcCCCCcEeccccc
Q psy17091 82 ESDIIIFIVDGRQG---LV-EQDKLITNFLRK-----SGQPIVLVINKSENINSSIS---LD-FY-ELGIGNPHIISALY 147 (1250)
Q Consensus 82 ~ad~il~v~D~~~~---~~-~~~~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~---~~-~~-~~~~~~~~~iSA~~ 147 (1250)
.+|++++|+|+++. .. .....+.+.+.. .++|+++|+||+|+...... .+ +. ..+ .+++++||++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~-~~vi~iSAkt 313 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG-KPVFPISALT 313 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC-CcEEEEEccC
Confidence 99999999999863 11 122334444443 36899999999999765433 12 22 223 3689999999
Q ss_pred CCchhHHHHHHHHhh
Q psy17091 148 GNGIKNFLENILTIE 162 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l 162 (1250)
+.|++++++.+.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 171
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.74 E-value=1.8e-17 Score=189.86 Aligned_cols=100 Identities=11% Similarity=0.216 Sum_probs=91.3
Q ss_pred CCCCCCCceEEEEEcChH---HHHHHHHHHHHHHHcCC-EEEEeeccccccccHHHHHHHHHHcCCCEEEEE-------c
Q psy17091 1135 NHNFSHQCDIYIVHVGKE---AELKAFVLSENLRTLGL-KVILNCVFNNIHESFKSQMKRANASNANFAAII-------G 1203 (1250)
Q Consensus 1135 ~~~~~~~~~v~V~~~~~~---~~~~a~~~a~~Lr~~gi-~v~~~~~~~~~~~s~~~~~~~A~~~gip~~vii-------g 1203 (1250)
||.|.+|.+|.|+|+.+. ...+|.++++.|+++|+ +|++|++ .+++++++.|+..|+||+|+| |
T Consensus 428 lp~wLAPvQVaVLPLs~~~~~l~eyAkeI~~~L~~~Gi~rv~~Dds-----esIGKKyRraDeiGiPy~ITVD~~Tl~dG 502 (539)
T PRK14894 428 LKPRLAPIKVAVFPLKRNHEGLVATAKAVRRQLQVGGRMRTVYDDT-----GAIGKLYRRQDEIGTPFCITVDFDTIGQG 502 (539)
T ss_pred CCcCCCCceEEEEeccccccchHHHHHHHHHHHHHCCCceEEEcCC-----CCHhHHHHhhhccCCCEEEEEeccccccc
Confidence 558999999999999873 34899999999999998 9999864 599999999999999999999 8
Q ss_pred cCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHH
Q psy17091 1204 ENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 1245 (1250)
Q Consensus 1204 ~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~ 1245 (1250)
++|.++++|+||+++++ +|..|++++++++|.+.++
T Consensus 503 dkE~e~gTVTVR~RDs~------eQ~rV~ideli~~L~~~~~ 538 (539)
T PRK14894 503 KDPALAGTVTVRDRDTM------AQERVPISELEAYLRDRVS 538 (539)
T ss_pred cchhhcCeEEEEEeCCC------eEEEEEHHHHHHHHHHHhc
Confidence 88888899999999999 9999999999999988764
No 172
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.4e-17 Score=197.17 Aligned_cols=159 Identities=26% Similarity=0.368 Sum_probs=128.3
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+.+|+++|.||||||||||+|+|.+.. |+++||+|.+..++....++..+.++|+||..+...-+..+++.+.... -.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cC
Confidence 467999999999999999999999865 9999999999999999999999999999998765544444555555443 35
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHH--hcCCCCcEecccccCCchhHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY--ELGIGNPHIISALYGNGIKNFLE 156 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~--~~~~~~~~~iSA~~g~gi~~L~~ 156 (1250)
.+|+++-|+|+++ .+...-+.-.+.+.++|+++++|++|..+.... .+.+ .+|. +++++||++|+|++++++
T Consensus 81 ~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv-PVv~tvA~~g~G~~~l~~ 157 (653)
T COG0370 81 KPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV-PVVPTVAKRGEGLEELKR 157 (653)
T ss_pred CCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC-CEEEEEeecCCCHHHHHH
Confidence 7899999999986 344444445566789999999999998776554 2222 4566 899999999999999999
Q ss_pred HHHHhhCCc
Q psy17091 157 NILTIELPY 165 (1250)
Q Consensus 157 ~i~~~l~~~ 165 (1250)
++.+..+.+
T Consensus 158 ~i~~~~~~~ 166 (653)
T COG0370 158 AIIELAESK 166 (653)
T ss_pred HHHHhcccc
Confidence 998755443
No 173
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.74 E-value=4.6e-17 Score=168.80 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=105.9
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+|++++.+. ...+.+|+.+.....+..++.. +.+|||||+.+ +.... ..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~l~-~~ 68 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMR-DQ 68 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc----------hHHHH-HH
Confidence 6899999999999999999997653 2345556555555556666654 66799999843 22222 24
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|.++..+.++.. ++..+.+ .++|+++|+||+|+.+..........+.+.+ ..+++++||
T Consensus 69 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~Sa 144 (162)
T cd04138 69 YMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSY----GIPYIETSA 144 (162)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHh----CCeEEEecC
Confidence 678899999999998754444432 3333332 4789999999999976432222222232222 258999999
Q ss_pred CCCCChHHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINHV 351 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (1250)
++|.|++++|+++.+.
T Consensus 145 ~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 145 KTRQGVEEAFYTLVRE 160 (162)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998754
No 174
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.74 E-value=3.6e-17 Score=170.86 Aligned_cols=149 Identities=25% Similarity=0.337 Sum_probs=114.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC---CEEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG---KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
|.|+++|.+|||||||+|+|++.+.. ....+++|.+.....+.+. +..+.+|||||+. .+......+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~---------~~~~~~~~~ 70 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE---------AFTNMRARG 70 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcH---------HHHHHHHHH
Confidence 68999999999999999999987644 3455678887776666664 6799999999975 233334456
Q ss_pred hhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhH---Hhc-----C-CCCcEeccccc
Q psy17091 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDF---YEL-----G-IGNPHIISALY 147 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~---~~~-----~-~~~~~~iSA~~ 147 (1250)
+..+|++++|+|++++..........+++..++|+++|+||+|+...... ... ... + ..+++++||++
T Consensus 71 ~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKT 150 (168)
T ss_pred HhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeeccc
Confidence 78999999999999876666666677788889999999999998754321 111 111 1 12679999999
Q ss_pred CCchhHHHHHHHHh
Q psy17091 148 GNGIKNFLENILTI 161 (1250)
Q Consensus 148 g~gi~~L~~~i~~~ 161 (1250)
|.|++++++.+.+.
T Consensus 151 ~~gi~~l~~~l~~~ 164 (168)
T cd01887 151 GEGIDDLLEAILLL 164 (168)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999764
No 175
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.74 E-value=4e-17 Score=172.55 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=108.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCccc--------------ccCCCcceeeeEEEEEE-----CCEEEEEEecCCCCcch
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALV--------------ANYPGLTRDRHYGEGYI-----GKKSFIIIDTGGFEPEV 64 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v--------------~~~~~~T~~~~~~~~~~-----~~~~~~liDTpG~~~~~ 64 (1250)
.|+++|.+|||||||+|+|++....+. ....|+|.+.......+ .+..+.+|||||+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--- 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV--- 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh---
Confidence 699999999999999999997532211 11234565544444433 34678899999986
Q ss_pred hhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHH-hcCC--C
Q psy17091 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGI--G 138 (1250)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~-~~~~--~ 138 (1250)
++...+..++..+|++|+|+|++++....+......+...++|+++|+||+|+.+.... .++. .++. .
T Consensus 79 ------~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (179)
T cd01890 79 ------DFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPS 152 (179)
T ss_pred ------hhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcc
Confidence 34455666788999999999998876655554444455568899999999998643221 2222 2233 2
Q ss_pred CcEecccccCCchhHHHHHHHHhhCC
Q psy17091 139 NPHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
.++++||++|.|++++++.+.+.++.
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 153 EAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred cEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 47999999999999999999887653
No 176
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.74 E-value=3.1e-17 Score=177.37 Aligned_cols=158 Identities=27% Similarity=0.390 Sum_probs=116.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE-EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.++|+++|++|||||||+|+|++.... +.+.++.|.+.....+.+.+. .+.+|||||+.........+.+.. ....+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRS-TLEEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHH-HHHHH
Confidence 379999999999999999999987643 556677788887777777665 899999999854322223233332 33457
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccchhHHhcCCCCcEecccccCCchhHHHH
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLE 156 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~ 156 (1250)
..+|++++|+|++++....+ ..+.++++. .++|+++|+||+|+...............+++++||+++.|++++++
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 198 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHHHHH
Confidence 79999999999987654443 234555554 36899999999998765443323333444789999999999999999
Q ss_pred HHHHh
Q psy17091 157 NILTI 161 (1250)
Q Consensus 157 ~i~~~ 161 (1250)
.+.+.
T Consensus 199 ~L~~~ 203 (204)
T cd01878 199 AIEEL 203 (204)
T ss_pred HHHhh
Confidence 98764
No 177
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.74 E-value=2.1e-17 Score=167.07 Aligned_cols=131 Identities=29% Similarity=0.456 Sum_probs=106.4
Q ss_pred HHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhc--CCCEEEEEeCCCCCCCccc---hhHH-hcCCCCcEeccccc
Q psy17091 74 KQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKS--GQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 74 ~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~--~~p~ilv~NK~D~~~~~~~---~~~~-~~~~~~~~~iSA~~ 147 (1250)
.++..++..+|++++|+|++.+....+..+.+++... ++|+++|+||+|+...+.. .+++ ..+ ..++++||++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~-~~ii~iSa~~ 81 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG-IVVVFFSALK 81 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC-CeEEEEEecC
Confidence 5677889999999999999998887888888888876 8999999999999654433 2333 333 3678999987
Q ss_pred CCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEE
Q psy17091 148 GNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY 227 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~ 227 (1250)
+.+ +++++|.||||||||+|+|++.....++..+|+|++.... ..
T Consensus 82 ~~~---------------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~--~~ 126 (141)
T cd01857 82 ENA---------------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTI--FL 126 (141)
T ss_pred CCc---------------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEE--Ee
Confidence 643 5999999999999999999998888888999999986543 33
Q ss_pred cCeeEEEEecCCCC
Q psy17091 228 NNKKYILIDTAGIR 241 (1250)
Q Consensus 228 ~~~~~~liDTpG~~ 241 (1250)
+ ..+.+|||||+.
T Consensus 127 ~-~~~~i~DtpG~~ 139 (141)
T cd01857 127 T-PTITLCDCPGLV 139 (141)
T ss_pred C-CCEEEEECCCcC
Confidence 3 378999999984
No 178
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.74 E-value=3.1e-17 Score=177.36 Aligned_cols=158 Identities=27% Similarity=0.378 Sum_probs=115.3
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe-eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
.++|+|+|.+|||||||+|++++.+. .+.+.+++|.+.....+.+++. .+.+|||||+.+... ....+.+. ....
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~--~~~~ 116 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP-HQLVEAFR--STLE 116 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC-HHHHHHHH--HHHH
Confidence 47999999999999999999998763 4446677888887777777665 899999999965421 12223332 2344
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
.+..+|++++|+|++++.+..+.. +...+.. .++|+++|+||+|+.+..... .... ....+++++||+
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-------~~~~-~~~~~~~~~Sa~ 188 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-------ERLE-AGRPDAVFISAK 188 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-------HHhh-cCCCceEEEEcC
Confidence 567899999999999876655543 2333333 368999999999997654322 1111 234689999999
Q ss_pred CCCChHHHHHHHHHH
Q psy17091 337 KLNNINSFMESINHV 351 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~ 351 (1250)
+|.|+++++++|.+.
T Consensus 189 ~~~gi~~l~~~L~~~ 203 (204)
T cd01878 189 TGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998654
No 179
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.74 E-value=3.5e-17 Score=171.01 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=102.3
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.+||+++|.+|||||||+++|....... ..|.++.+. ..+..++..+.+|||||+. ++... ...
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~--~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~----------~~~~~-~~~ 72 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT--TIPTVGFNV--ETVTYKNVKFNVWDVGGQD----------KIRPL-WRH 72 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc--ccCCcccce--EEEEECCEEEEEEECCCCH----------HHHHH-HHH
Confidence 35899999999999999999998654422 233333332 2445577889999999993 23221 234
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|+++..+..+. ..+..+.. .++|+++|+||+|+.+....++..+.+..........+++++||
T Consensus 73 ~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA 152 (168)
T cd04149 73 YYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 152 (168)
T ss_pred HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeC
Confidence 67899999999999986433222 22322322 36899999999998653222232222211000112247899999
Q ss_pred CCCCChHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINH 350 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~ 350 (1250)
++|.|++++|++|.+
T Consensus 153 k~g~gv~~~~~~l~~ 167 (168)
T cd04149 153 TSGDGLYEGLTWLSS 167 (168)
T ss_pred CCCCChHHHHHHHhc
Confidence 999999999999853
No 180
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.74 E-value=3.5e-17 Score=172.06 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=104.7
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
..++|+++|.+|||||||+++|.+.......+..|. ....+.+++..+.+|||||+.. +.. ....
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~----------~~~-~~~~ 77 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGF----QIKTLEYEGYKLNIWDVGGQKT----------LRP-YWRN 77 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEECCEEEEEEECCCCHH----------HHH-HHHH
Confidence 468999999999999999999998754333333332 2344566788899999999832 211 1235
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHH----HcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIY----ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|+++..+..+. ..+..+. ..+.|+++|+||+|+.+....++..+.+..........+++++||
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (173)
T cd04154 78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSA 157 (173)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 67899999999999886433322 2222222 257999999999999754333332222211101123468999999
Q ss_pred CCCCChHHHHHHHH
Q psy17091 336 IKLNNINSFMESIN 349 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~ 349 (1250)
++|.|++++++++.
T Consensus 158 ~~g~gi~~l~~~l~ 171 (173)
T cd04154 158 VTGEGLLQGIDWLV 171 (173)
T ss_pred CCCcCHHHHHHHHh
Confidence 99999999999875
No 181
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=6.3e-17 Score=169.66 Aligned_cols=158 Identities=30% Similarity=0.475 Sum_probs=122.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchh--hHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK--KGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~--~~~~~~~~~~~~~~~ 80 (1250)
++|+++|.+|+|||||+|+|++.......+.+++|++.....+..++..+.+|||||+..... ..+..-.......++
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~ 82 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI 82 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHH
Confidence 589999999999999999999987666788899999998888888889999999999864321 111111113345567
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCc--cc---h-hHH-hc---CCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS--IS---L-DFY-EL---GIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~--~~---~-~~~-~~---~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|+.++.+.....+...+...+.|+++|+||+|+.+.. .. . ... .+ +..+++++||+++.|
T Consensus 83 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (174)
T cd01895 83 ERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQG 162 (174)
T ss_pred hhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCC
Confidence 89999999999998877777677777776789999999999987652 21 1 111 11 124689999999999
Q ss_pred hhHHHHHHHH
Q psy17091 151 IKNFLENILT 160 (1250)
Q Consensus 151 i~~L~~~i~~ 160 (1250)
++++++.+.+
T Consensus 163 i~~~~~~l~~ 172 (174)
T cd01895 163 VDKLFDAIDE 172 (174)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 182
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.73 E-value=5.2e-17 Score=169.58 Aligned_cols=156 Identities=18% Similarity=0.136 Sum_probs=106.4
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcce---eccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRV---ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~---~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+|+++|.+|||||||+|+|.+.... .......+|.......+.+++..+.+|||||+... .. ....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~-~~~~ 69 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL----------RS-LWDK 69 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh----------HH-HHHH
Confidence 5899999999999999999864321 11122344555555677788899999999999432 11 1235
Q ss_pred hhccCcEEEEEecCCCCCCHHH-HHHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccC--CCCeEEEe
Q psy17091 261 SILEANVVILLLDAQQNISAQD-INIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL--SFAMFNFI 333 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d-~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~--~~~~iv~i 333 (1250)
+++.+|++++|+|+++.-+..+ ...+..+.. .++|+++|+||+|+.+.....+..+.+....... ...+++++
T Consensus 70 ~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 70 YYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred HhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEe
Confidence 6789999999999987533222 122333222 4799999999999876544334333333332111 24589999
Q ss_pred ecCCCCChHHHHHHHHH
Q psy17091 334 SAIKLNNINSFMESINH 350 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~ 350 (1250)
||++|.|++++++++.+
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999853
No 183
>KOG0084|consensus
Probab=99.73 E-value=6.2e-17 Score=162.35 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=119.0
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
.-+||.++|.+|||||.|+-++.+... .-+....+..|.....++++|+ ++++|||+|+ |+|.. .+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ----------ERFrt-it 75 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTF-TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ----------ERFRT-IT 75 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCc-chhhcceeeeEEEEEEeeecceEEEEEeeecccc----------HHHhh-hh
Confidence 468999999999999999999997543 2234445567777788888876 5778999999 55553 34
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEEe
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~i 333 (1250)
..++|+||++|+|+|.|..-+..... ++..+.+ .+.|.++|+||+|+.+..... +..+.+...+ +..+++++
T Consensus 76 ~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~---~~~~f~ET 152 (205)
T KOG0084|consen 76 SSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADEL---GIPIFLET 152 (205)
T ss_pred HhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhc---CCcceeec
Confidence 58899999999999999976665543 4444444 368999999999998654332 1222333333 33339999
Q ss_pred ecCCCCChHHHHHHHHHHHhhcc
Q psy17091 334 SAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
|||.+.||++.|..+...+....
T Consensus 153 SAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 153 SAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred ccCCccCHHHHHHHHHHHHHHhc
Confidence 99999999999999877765544
No 184
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.73 E-value=1.2e-16 Score=166.10 Aligned_cols=158 Identities=33% Similarity=0.485 Sum_probs=123.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|+|||||+|+|++.+.+.....+.+|+..........+..+.+|||||+.... ......+.......+..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK-KKLGERMVKAAWSALKD 82 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch-HHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999877777778888887777777777899999999987543 12223344556667889
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCc-cch---hHH-h-cCCCCcEecccccCCchhHHHH
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS-ISL---DFY-E-LGIGNPHIISALYGNGIKNFLE 156 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~-~~~---~~~-~-~~~~~~~~iSA~~g~gi~~L~~ 156 (1250)
+|++++|+|+++.....+..+...+...+.|+++|+||+|+.... ... +.+ . .+..+++++|++++.|++++++
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 162 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLE 162 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHH
Confidence 999999999998766666777777877789999999999987432 221 122 2 2235789999999999999999
Q ss_pred HHHHh
Q psy17091 157 NILTI 161 (1250)
Q Consensus 157 ~i~~~ 161 (1250)
.+.+.
T Consensus 163 ~l~~~ 167 (168)
T cd04163 163 EIVKY 167 (168)
T ss_pred HHHhh
Confidence 98754
No 185
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.73 E-value=7e-17 Score=173.05 Aligned_cols=151 Identities=21% Similarity=0.181 Sum_probs=110.9
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceecc---------------CCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcch
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITY---------------DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF 247 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~---------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 247 (1250)
.+|+++|.+|||||||+|+|++....... ...|+|.+.....+.+++..+.+|||||+.+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-----
Confidence 47999999999999999999963211111 2367777777777888889999999999943
Q ss_pred hhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhcc---
Q psy17091 248 EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF--- 324 (1250)
Q Consensus 248 ~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~--- 324 (1250)
|.. ....+++.+|++++|+|++++...+...++..+...++|+++|+||+|+.+.. .....+++.+.+..
T Consensus 78 -----~~~-~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~ 150 (194)
T cd01891 78 -----FGG-EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELGA 150 (194)
T ss_pred -----HHH-HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhCC
Confidence 221 23456789999999999998877777777777777899999999999997532 22333333333311
Q ss_pred ---CCCCeEEEeecCCCCChHHHH
Q psy17091 325 ---LSFAMFNFISAIKLNNINSFM 345 (1250)
Q Consensus 325 ---~~~~~iv~iSA~~g~gv~~l~ 345 (1250)
....+++++||++|.|+.++-
T Consensus 151 ~~~~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 151 TEEQLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred ccccCccCEEEeehhccccccccc
Confidence 113589999999999986553
No 186
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.73 E-value=8.7e-17 Score=167.28 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=108.1
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||+|++++... ++.+++|+.+.....+.+++. .+.+|||||+.+.. .. ..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~-~~ 68 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS----------AM-RE 68 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh----------HH-HH
Confidence 47999999999999999999997543 456666766665556667665 57789999985432 11 22
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|+++..+.+... ++..+.. .+.|+++|+||+|+.+..... .++..+..... ..+++++|
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~--~~~~~~~~~~~-~~~~~~~S 145 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS--REEGQELARKL-KIPYIETS 145 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec--HHHHHHHHHHc-CCcEEEee
Confidence 4668899999999999865443332 2333332 378999999999997543211 11122222222 25899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHVY 352 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (1250)
|++|.|++++|+++.+..
T Consensus 146 a~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 146 AKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999987653
No 187
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.73 E-value=2e-17 Score=174.14 Aligned_cols=157 Identities=22% Similarity=0.226 Sum_probs=111.5
Q ss_pred EEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc-CeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccC
Q psy17091 187 IVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEA 265 (1250)
Q Consensus 187 ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~a 265 (1250)
|+|++|||||||+|+|.+.+. .+++.+++|.++....+.++ +.++.+|||||+.+.....+.+ .......++.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~----~~~~~~~~~~~ 75 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL----GNQFLAHIRRA 75 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc----cHHHHHHHhcc
Confidence 589999999999999999765 56788999999888888888 8999999999985432111111 11234556789
Q ss_pred cEEEEEecCCCCC------CHHHHH-HHHHHHH----------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCC
Q psy17091 266 NVVILLLDAQQNI------SAQDIN-IANFIYE----------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFA 328 (1250)
Q Consensus 266 d~vllviD~~~~~------~~~d~~-~~~~~~~----------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 328 (1250)
|++++|+|+++.. +..+.. +...+.. .++|+++|+||+|+.......... ..........
T Consensus 76 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~ 152 (176)
T cd01881 76 DAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGA 152 (176)
T ss_pred CEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCC
Confidence 9999999998863 222222 2222221 379999999999997654433221 1112223356
Q ss_pred eEEEeecCCCCChHHHHHHHHHH
Q psy17091 329 MFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 329 ~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
+++++||+++.|++++++.+...
T Consensus 153 ~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 153 EVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CEEEEehhhhcCHHHHHHHHHhh
Confidence 79999999999999999988653
No 188
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.73 E-value=6.9e-17 Score=172.90 Aligned_cols=157 Identities=20% Similarity=0.212 Sum_probs=110.3
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.|+++|.+|||||||++++...... ....+.++.+.....+.+++ ..+.+|||||+ ++|.... ..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGq----------e~~~~l~-~~ 68 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQ----------ERFNSIT-SA 68 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCc----------hhhHHHH-HH
Confidence 36899999999999999999975532 22234445566666677777 45678999999 3343332 35
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.||++++|+|+++..+.++.. ++..+.. .+.|+++|+||+|+.+..... ...+++.+ .....+++++||
T Consensus 69 y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~---~~~~~~~~etSA 145 (202)
T cd04120 69 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQ---QITGMRFCEASA 145 (202)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH---hcCCCEEEEecC
Confidence 789999999999999986666654 3333332 368999999999996533221 12222222 222367999999
Q ss_pred CCCCChHHHHHHHHHHHhh
Q psy17091 336 IKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (1250)
++|.|++++|+++.+.+..
T Consensus 146 ktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 146 KDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876543
No 189
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.73 E-value=2.2e-17 Score=198.27 Aligned_cols=156 Identities=24% Similarity=0.312 Sum_probs=121.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceecc------------------------------CCCCcceeeEEEEEEEcC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITY------------------------------DTPGTTRDSIKSLFEYNN 229 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~------------------------------~~~gtT~~~~~~~~~~~~ 229 (1250)
++.++|+++|++|+|||||+++|+.....+.. ..+|+|+|.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45799999999999999999999954433321 168999999999999999
Q ss_pred eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCC--CCCHHHHHHHHHHHHcCC-cEEEEEeccccC
Q psy17091 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQ--NISAQDINIANFIYESGR-SLIVCVNKWDSI 306 (1250)
Q Consensus 230 ~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~--~~~~~d~~~~~~~~~~~~-p~iiv~NK~Dl~ 306 (1250)
.++.+|||||+.+.. ......++.+|++++|+|+++ ++..++...+..+...+. |+++|+||+|+.
T Consensus 84 ~~i~liDtpG~~~~~-----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~ 152 (425)
T PRK12317 84 YYFTIVDCPGHRDFV-----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV 152 (425)
T ss_pred eEEEEEECCCcccch-----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 999999999985432 112344678999999999998 888888888877777775 699999999997
Q ss_pred Cc--cchHHHHHHHHHHhccCC----CCeEEEeecCCCCChHHHHH
Q psy17091 307 IH--NQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINSFME 346 (1250)
Q Consensus 307 ~~--~~~~~~~~~l~~~l~~~~----~~~iv~iSA~~g~gv~~l~~ 346 (1250)
+. .......+++.+.+...+ ..+++++||++|.|++++.+
T Consensus 153 ~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 153 NYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 52 223444555665554333 36899999999999998764
No 190
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=7.3e-17 Score=174.67 Aligned_cols=163 Identities=24% Similarity=0.260 Sum_probs=125.2
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
...|+|+|.||||||||++.+++.+. .+.++|+||+....+.+++++.++++|||||+.++...+.+--+.....++++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 47899999999999999999999875 45599999999999999999999999999999998755544333344555555
Q ss_pred hccCcEEEEEecCCC--CCC-HHHHHHHHHHHH-cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCC
Q psy17091 262 ILEANVVILLLDAQQ--NIS-AQDINIANFIYE-SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (1250)
Q Consensus 262 ~~~ad~vllviD~~~--~~~-~~d~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~ 337 (1250)
+ +++++|++|.|. |.+ +....+++.+.+ .+.|+++|+||+|+.+....++....+.. .+......+|+..
T Consensus 247 l--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~----~~~~~~~~~~~~~ 320 (346)
T COG1084 247 L--AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLE----EGGEEPLKISATK 320 (346)
T ss_pred h--cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHh----hccccccceeeee
Confidence 5 467999999876 555 455667777776 46899999999999866555444433322 2233456789999
Q ss_pred CCChHHHHHHHHHH
Q psy17091 338 LNNINSFMESINHV 351 (1250)
Q Consensus 338 g~gv~~l~~~i~~~ 351 (1250)
+.+++.+...+...
T Consensus 321 ~~~~d~~~~~v~~~ 334 (346)
T COG1084 321 GCGLDKLREEVRKT 334 (346)
T ss_pred hhhHHHHHHHHHHH
Confidence 99999888777665
No 191
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=8.6e-17 Score=183.09 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=110.5
Q ss_pred CCeE-EEEEeHHHHHHHHHHcc-------------CCCCCCCCceEEEEEcChH--HHHHHHHHHHHHHHcCCEEEEeec
Q psy17091 1113 VPAS-GFAIGIERLIELIKKIN-------------INHNFSHQCDIYIVHVGKE--AELKAFVLSENLRTLGLKVILNCV 1176 (1250)
Q Consensus 1113 ~pav-Gfsi~lerl~~~l~~~~-------------~~~~~~~~~~v~V~~~~~~--~~~~a~~~a~~Lr~~gi~v~~~~~ 1176 (1250)
.|.| --|+|+||++.++.+.. .+|++.+|++++|+|+... ....|.++.+.|++.|+.|.+|++
T Consensus 415 iP~VIEPSfGidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v~yDds 494 (558)
T COG0423 415 IPHVIEPSFGIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYDDS 494 (558)
T ss_pred cCceeccCCCchHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecccchhHHHHHHHHHHHhcCceEEecCC
Confidence 5655 88899999999988732 2678899999999999765 778999999999999999999876
Q ss_pred cccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHH
Q psy17091 1177 FNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 1245 (1250)
Q Consensus 1177 ~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~ 1245 (1250)
.|+|++++.+++.|.||+|.|..+.+++++||||+|++. +|.+|+++||+++|.+.+.
T Consensus 495 -----GsIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~------~QvRv~i~el~~~l~~~~~ 552 (558)
T COG0423 495 -----GSIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSM------EQVRVKIEELADYLRELIK 552 (558)
T ss_pred -----CcHhhhhhhccccCCceEEEecCCcccCCcEEEeecCch------heeeeeHHHHHHHHHHHhc
Confidence 599999999999999999999999999999999999999 9999999999999998874
No 192
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=6.7e-17 Score=174.96 Aligned_cols=158 Identities=30% Similarity=0.417 Sum_probs=125.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.|.|++.|.||||||||++++++.+.. +.++|+||+..+.++++.++..+++|||||+.+...++ ...+..|+..+++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E-rN~IE~qAi~AL~ 245 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE-RNEIERQAILALR 245 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCChHH-hcHHHHHHHHHHH
Confidence 479999999999999999999999877 89999999999999999999999999999987654333 3466677777776
Q ss_pred c-CCEEEEEEeCCC--CCChhh-HHHHHHHHh-cCCCEEEEEeCCCCCCCccc----hhHHhcCCCCcEecccccCCchh
Q psy17091 82 E-SDIIIFIVDGRQ--GLVEQD-KLITNFLRK-SGQPIVLVINKSENINSSIS----LDFYELGIGNPHIISALYGNGIK 152 (1250)
Q Consensus 82 ~-ad~il~v~D~~~--~~~~~~-~~~~~~l~~-~~~p~ilv~NK~D~~~~~~~----~~~~~~~~~~~~~iSA~~g~gi~ 152 (1250)
. .++|||++|.+. +.+-+. ..+.+.++. .+.|+++|+||+|..+.+.. ......|...+..+|+..+.+++
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 325 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLD 325 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHH
Confidence 5 679999999985 333333 234444443 56899999999998866554 22345566567889999999999
Q ss_pred HHHHHHHHh
Q psy17091 153 NFLENILTI 161 (1250)
Q Consensus 153 ~L~~~i~~~ 161 (1250)
.+.+.+...
T Consensus 326 ~~~~~v~~~ 334 (346)
T COG1084 326 KLREEVRKT 334 (346)
T ss_pred HHHHHHHHH
Confidence 988888765
No 193
>PRK04213 GTP-binding protein; Provisional
Probab=99.72 E-value=8.7e-17 Score=173.47 Aligned_cols=158 Identities=31% Similarity=0.410 Sum_probs=111.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcch--hhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV--KKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~ 79 (1250)
.++|+++|++|||||||+|+|++... .++..|++|++.... .++ .+.+|||||+.... .+...+++...+..+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 36899999999999999999998774 377888999876543 333 69999999963211 112233444443333
Q ss_pred ----hhcCCEEEEEEeCCCCC-----------ChhhHHHHHHHHhcCCCEEEEEeCCCCCCCcc-c-hhHH-hcCC----
Q psy17091 80 ----IIESDIIIFIVDGRQGL-----------VEQDKLITNFLRKSGQPIVLVINKSENINSSI-S-LDFY-ELGI---- 137 (1250)
Q Consensus 80 ----~~~ad~il~v~D~~~~~-----------~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~-~-~~~~-~~~~---- 137 (1250)
+..++++++|+|+.... ...+.++...+...++|+++|+||+|+.+... . .++. .++.
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 163 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPW 163 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccc
Confidence 44678999999986421 12345566777777899999999999865442 1 2222 2232
Q ss_pred ----CCcEecccccCCchhHHHHHHHHhhCCc
Q psy17091 138 ----GNPHIISALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 138 ----~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
.+++++||++| |++++++++.+.+.+.
T Consensus 164 ~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 164 RQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 14689999999 9999999999877543
No 194
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.72 E-value=2.9e-17 Score=191.27 Aligned_cols=229 Identities=25% Similarity=0.296 Sum_probs=154.1
Q ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hh----HH-hcCCC--C
Q psy17091 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LD----FY-ELGIG--N 139 (1250)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~----~~-~~~~~--~ 139 (1250)
.+......+...++++++|+|+.+.......++.+.+. ++|+++|+||+|+...... .+ +. ..++. .
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~ 129 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVD 129 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCc
Confidence 55666666678999999999998755555555555543 6899999999999754321 11 12 34542 5
Q ss_pred cEecccccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCc-----ceeccCCC
Q psy17091 140 PHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN-----RVITYDTP 214 (1250)
Q Consensus 140 ~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~-----~~~~~~~~ 214 (1250)
++.+||++|.|++++++.+.+... ..+++++|.+|||||||+|+|++.. ...+++.|
T Consensus 130 i~~vSAk~g~gv~eL~~~l~~~~~------------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~p 191 (360)
T TIGR03597 130 IILVSAKKGNGIDELLDKIKKARN------------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFP 191 (360)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhC------------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCC
Confidence 789999999999999999865310 2469999999999999999999753 35678999
Q ss_pred CcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCC
Q psy17091 215 GTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR 294 (1250)
Q Consensus 215 gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~ 294 (1250)
|||++.....+ +..+.++||||+.........++... ...+.--+......+.+|..+.+...+...+.++...+.
T Consensus 192 gtT~~~~~~~~---~~~~~l~DtPG~~~~~~~~~~l~~~~-l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~ 267 (360)
T TIGR03597 192 GTTLDLIEIPL---DDGHSLYDTPGIINSHQMAHYLDKKD-LKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKT 267 (360)
T ss_pred CeEeeEEEEEe---CCCCEEEECCCCCChhHhhhhcCHHH-HhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCce
Confidence 99998765443 34578999999976542222222111 111111234567888888877555545444444444556
Q ss_pred cEEEEEeccccCCccchHHHHHHHHHHhc
Q psy17091 295 SLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323 (1250)
Q Consensus 295 p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~ 323 (1250)
.+.+.++|-+.......+...+.+++.++
T Consensus 268 ~~~~~~~~~~~~h~t~~~~a~~~~~~~~g 296 (360)
T TIGR03597 268 SFTFYVSNELNIHRTKLENADELYNKHLG 296 (360)
T ss_pred EEEEEccCCceeEeechhhhHHHHHhhcC
Confidence 77888888877665444444445555544
No 195
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.72 E-value=2e-16 Score=165.01 Aligned_cols=156 Identities=20% Similarity=0.171 Sum_probs=108.1
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||++++++.+... ...++++.+.....+..++. .+.+|||||+. .+... ..
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~~ 69 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTI-TS 69 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------hHHHH-HH
Confidence 3789999999999999999999765433 34555555555566666654 67889999983 23222 23
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|+++..+..... ++..+.+ .+.|+++|+||+|+...... .+....+.+.. ..+++++|
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S 145 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADEL----GIPFLETS 145 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHc----CCeEEEEE
Confidence 4668999999999998864333322 2333333 36899999999998654322 12222222222 36899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q psy17091 335 AIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (1250)
|++|.|++++|+.+.+.+.
T Consensus 146 a~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 146 AKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999977653
No 196
>KOG0094|consensus
Probab=99.72 E-value=6.8e-17 Score=160.89 Aligned_cols=152 Identities=19% Similarity=0.185 Sum_probs=120.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|..+||||||++|++....- ....+++..|.....+.+.|+ .++||||+|++ +|+..+..|+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd-~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE---------RFrslipsY~ 92 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI 92 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhc-ccccceeeeEEEEEEEEEcCcEEEEEEEecccHH---------HHhhhhhhhc
Confidence 58999999999999999999987643 455667788988888888775 78899999975 8999999999
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHH----hc---CCCEEEEEeCCCCCCCccc----hh--HHhcCCCCcEeccccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLR----KS---GQPIVLVINKSENINSSIS----LD--FYELGIGNPHIISALY 147 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~----~~---~~p~ilv~NK~D~~~~~~~----~~--~~~~~~~~~~~iSA~~ 147 (1250)
++++++|+|+|.++.-+-. ...+|+. .. +.-+++|+||.||.+.... .+ ..+++. ..+.+||+.
T Consensus 93 Rds~vaviVyDit~~~Sfe--~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~f~etsak~ 169 (221)
T KOG0094|consen 93 RDSSVAVIVYDITDRNSFE--NTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-EFIETSAKA 169 (221)
T ss_pred cCCeEEEEEEeccccchHH--HHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc-EEEEecccC
Confidence 9999999999998743333 2333333 22 2447899999999987665 12 224454 778999999
Q ss_pred CCchhHHHHHHHHhhCCccc
Q psy17091 148 GNGIKNFLENILTIELPYKK 167 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~~~~ 167 (1250)
|.||++++..|...+++...
T Consensus 170 g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 170 GENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred CCCHHHHHHHHHHhccCccc
Confidence 99999999999988887643
No 197
>KOG0092|consensus
Probab=99.72 E-value=3.8e-17 Score=163.25 Aligned_cols=152 Identities=20% Similarity=0.128 Sum_probs=115.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|.+|||||||+-|+...+.. ....|++........+..++ ..+.||||+|++ ++......++
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~-e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQE---------Ry~slapMYy 75 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFH-ENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQE---------RYHSLAPMYY 75 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccc-cccccccccEEEEEEEEeCCcEEEEEEEEcCCcc---------ccccccccee
Confidence 58999999999999999999987743 22356666666666777776 577899999987 5667788899
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHH---hcC---CCEEEEEeCCCCCCCccc-----hhHHhcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLR---KSG---QPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~---~~~---~p~ilv~NK~D~~~~~~~-----~~~~~~~~~~~~~iSA~~g~ 149 (1250)
++|+++|+|+|.++ ..+...+.+|+. +.. .-+.+|+||+|+.+...+ .++.+..--..+++||++|.
T Consensus 76 RgA~AAivvYDit~--~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~ 153 (200)
T KOG0092|consen 76 RGANAAIVVYDITD--EESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGE 153 (200)
T ss_pred cCCcEEEEEEeccc--HHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEeccccc
Confidence 99999999999987 344444444444 322 235579999999885554 33443322367999999999
Q ss_pred chhHHHHHHHHhhCCcc
Q psy17091 150 GIKNFLENILTIELPYK 166 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~~~ 166 (1250)
|+++++..|.+.+++..
T Consensus 154 Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 154 NVNEIFQAIAEKLPCSD 170 (200)
T ss_pred CHHHHHHHHHHhccCcc
Confidence 99999999999988764
No 198
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.72 E-value=1.2e-16 Score=166.12 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=107.5
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||++++..... ...+++|+.+.....+..++. .+.+|||||+.+.. ... ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~-~~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT----------AMR-DL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccc----------hHH-HH
Confidence 6899999999999999999997653 234556666666666667765 45679999984432 222 24
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
+++.+|++++|+|.++..+.++. .++..+.+ .++|+++|+||+|+.+.... .+....+.+.. + .+++++|
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---~-~~~~~~S 144 (163)
T cd04136 69 YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQW---G-CPFYETS 144 (163)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHc---C-CeEEEec
Confidence 56889999999999886554433 23444443 36899999999999753322 12222233322 2 6899999
Q ss_pred cCCCCChHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHV 351 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~ 351 (1250)
|++|.|++++++++.+.
T Consensus 145 a~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 145 AKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 199
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=9.5e-17 Score=156.73 Aligned_cols=116 Identities=41% Similarity=0.610 Sum_probs=97.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|+++|.+|||||||+|+|++.+.+.++..+++|++.....+.+++..+.++||||+.+.............+...+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 69999999999999999999987777999999999998888889999999999999976542222223445566777999
Q ss_pred CEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeC
Q psy17091 84 DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK 120 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK 120 (1250)
|++++|+|+.++....+..+.++++ .++|+++|+||
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 9999999988755556677888887 78999999998
No 200
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.72 E-value=9e-17 Score=197.77 Aligned_cols=160 Identities=22% Similarity=0.229 Sum_probs=127.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcc--eeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENR--VITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~--~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.|+++|++|+|||||+|+|++.+. ......+|+|.+.....+.+++..+.+|||||+ +.|. .....
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh----------e~f~-~~~~~ 69 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH----------EKFI-SNAIA 69 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH----------HHHH-HHHHh
Confidence 3699999999999999999998542 222346789999888888888899999999998 3443 33456
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEeccccCCccchHHHHHHHHHHhccC---CCCeEEEeecC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQRKIIKNNIKKKLNFL---SFAMFNFISAI 336 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~---~~~~iv~iSA~ 336 (1250)
.+..+|++++|+|++++...+..+.+..+...++| +++|+||+|+.+........+++.+.+... ...|++++||+
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 77899999999999999888888888888888999 999999999987654444455555544322 24799999999
Q ss_pred CCCChHHHHHHHHHHHh
Q psy17091 337 KLNNINSFMESINHVYD 353 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~ 353 (1250)
+|.|++++++.+.+...
T Consensus 150 tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 150 TGQGIGELKKELKNLLE 166 (581)
T ss_pred CCCCchhHHHHHHHHHH
Confidence 99999999988765543
No 201
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.72 E-value=9e-17 Score=170.44 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=102.6
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEE---cCeeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY---NNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
.+||+++|.+|||||||++++.+.+... ..|.++.+.....+.. .+..+.+|||||+.+ +... .
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~-~ 69 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN--TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK----------LRPL-W 69 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC--cCCccccceeEEEeeccCCCceEEEEEECCCcHh----------HHHH-H
Confidence 5899999999999999999998765432 2332222222233332 346789999999832 2221 2
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HH----HHHHHcCCcEEEEEeccccCCccchHHHHHHHHHH--hccCCCCeEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IA----NFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK--LNFLSFAMFN 331 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~----~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~--l~~~~~~~iv 331 (1250)
..+++.+|++++|+|+++..+..+.. .+ ......++|+++|+||+|+.+.....+.. .+... .......+++
T Consensus 70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVE-KLLALHELSASTPWHVQ 148 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHH-HHhCccccCCCCceEEE
Confidence 24578999999999998853322221 22 22233579999999999986432222221 11111 1111235789
Q ss_pred EeecCCCCChHHHHHHHHHHHh
Q psy17091 332 FISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 332 ~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
++||++|.|++++++++.+.+.
T Consensus 149 ~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 149 PACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred EeecccCCCHHHHHHHHHHHHH
Confidence 9999999999999999987664
No 202
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.72 E-value=8e-17 Score=169.43 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=107.8
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||++++...+. ...+.+|..+.....+..++. .+.+|||||+.+. ...+ ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~-~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY----------DRLR-PL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccch----------hhhh-hh
Confidence 6899999999999999999997553 234445555544445666664 5678999999443 2222 23
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH--HHHHHHH--cCCcEEEEEeccccCCccchH----------HHHHHHHHHhccCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN--IANFIYE--SGRSLIVCVNKWDSIIHNQRK----------IIKNNIKKKLNFLS 326 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~--~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~----------~~~~~l~~~l~~~~ 326 (1250)
+++.+|++++|+|.++..+.++.. ++..+.. .+.|+++|+||+|+.+..... ...++.++.....+
T Consensus 69 ~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~ 148 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148 (175)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhC
Confidence 678999999999999876665542 4444443 368999999999986532111 01112222222333
Q ss_pred CCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 327 FAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 327 ~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
..+++++||++|.|++++|+.+...
T Consensus 149 ~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 149 AVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988653
No 203
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.72 E-value=1e-16 Score=172.77 Aligned_cols=158 Identities=18% Similarity=0.118 Sum_probs=107.2
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc-C--eeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-N--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
+||+++|.+|||||||++++++..... ...|.+..+.....+.++ + ..+.+|||||+.+ +... ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~----------~~~~-~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER----------FGGM-TR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh----------hhhh-HH
Confidence 589999999999999999999764322 223333445444555655 3 4578899999833 2222 23
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH-------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEE
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE-------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFN 331 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv 331 (1250)
.+++.+|++++|+|+++..+.+... +...+.. .+.|+++|+||+|+.+.... ..+++.+.....+..+++
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 146 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENGFIGWF 146 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcCCceEE
Confidence 5678999999999999875554443 2222221 46899999999999742211 122233333333346899
Q ss_pred EeecCCCCChHHHHHHHHHHHhh
Q psy17091 332 FISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 332 ~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
++||++|.|++++|+++.+.+..
T Consensus 147 e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 147 ETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999877643
No 204
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.72 E-value=1.2e-16 Score=166.02 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=105.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|++++... +..+++++.+.....+..++. .+.+|||||++ ++......++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTE---------QFTAMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcc---------ccchHHHHHh
Confidence 5899999999999999999997653 344555555555555666664 56789999975 3334445567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
+++|++++|+|.++..+..+ ..+.+.+.+ .+.|+++|+||+|+.+.... ..+. ..+ .+++++||++|.
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSAKSKI 149 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 89999999999987433222 223333432 36899999999998654333 1222 233 367999999999
Q ss_pred chhHHHHHHHHhh
Q psy17091 150 GIKNFLENILTIE 162 (1250)
Q Consensus 150 gi~~L~~~i~~~l 162 (1250)
|++++++++.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998643
No 205
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.72 E-value=1e-16 Score=171.54 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=114.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC------CCcccccCCCcceeeeEEEEEEC--------------CEEEEEEecCCCCcc
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNS------RDALVANYPGLTRDRHYGEGYIG--------------KKSFIIIDTGGFEPE 63 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~------~~~~v~~~~~~T~~~~~~~~~~~--------------~~~~~liDTpG~~~~ 63 (1250)
+|+++|++|||||||+|+|++. ........+++|.+.......+. +..+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 6999999999999999999973 12234556788888877777665 6799999999974
Q ss_pred hhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-------hhH----
Q psy17091 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDF---- 132 (1250)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-------~~~---- 132 (1250)
.+...+..+...+|++++|+|++++....+.+...+....++|+++|+||+|+...... .+.
T Consensus 80 -------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 80 -------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 34455566678899999999999876666554444555568899999999998743321 111
Q ss_pred H-hcCC--CCcEecccccCCchhHHHHHHHHhhCCc
Q psy17091 133 Y-ELGI--GNPHIISALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 133 ~-~~~~--~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
+ ..+. .+++++||++|.|+++|++.+...++.+
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1 1122 3679999999999999999998877643
No 206
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.72 E-value=1.6e-16 Score=164.74 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=110.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|++|||||||+|++++.+.. ....|++|.+.....+.+++. .+.+|||||.. .+.......+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~---------~~~~~~~~~~ 70 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE---------RFRSLIPSYI 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHHh
Confidence 37999999999999999999988754 456788888888888877774 68999999964 3444566678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHH-HHhc--CCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNF-LRKS--GQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~-l~~~--~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|.+++.+... ..+... .... +.|+++|+||+|+...... ..+. ..+ ..++++||+++.|
T Consensus 71 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 149 (161)
T cd01861 71 RDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-AMFIETSAKAGHN 149 (161)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEEeCCCCCC
Confidence 89999999999986433222 123332 2233 3899999999999544332 2222 233 3689999999999
Q ss_pred hhHHHHHHHHh
Q psy17091 151 IKNFLENILTI 161 (1250)
Q Consensus 151 i~~L~~~i~~~ 161 (1250)
++++++.+.+.
T Consensus 150 v~~l~~~i~~~ 160 (161)
T cd01861 150 VKELFRKIASA 160 (161)
T ss_pred HHHHHHHHHHh
Confidence 99999999764
No 207
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.72 E-value=3.5e-17 Score=169.82 Aligned_cols=142 Identities=27% Similarity=0.320 Sum_probs=99.1
Q ss_pred CEEEEEEeCCCCCChhhHHHHHH--HHhcCCCEEEEEeCCCCCCCccc---hhHHhcCCCCcEec---------------
Q psy17091 84 DIIIFIVDGRQGLVEQDKLITNF--LRKSGQPIVLVINKSENINSSIS---LDFYELGIGNPHII--------------- 143 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~~~~~~~--l~~~~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~~i--------------- 143 (1250)
|++++|+|++.+....+..+.+. +...++|+++|+||+|+.+.... .+.+......+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 78999999999888878888887 55567999999999999765544 22332222122222
Q ss_pred ----------ccccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCC
Q psy17091 144 ----------SALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDT 213 (1250)
Q Consensus 144 ----------SA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~ 213 (1250)
|+..+.|.+.+++.+.+..... .....++++++|.||||||||+|+|++.+...+++.
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~ 148 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSRNK------------DIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGAT 148 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhhcc------------ccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCC
Confidence 2233333444443332211110 012358999999999999999999999998899999
Q ss_pred CCcceeeEEEEEEEcCeeEEEEecCCC
Q psy17091 214 PGTTRDSIKSLFEYNNKKYILIDTAGI 240 (1250)
Q Consensus 214 ~gtT~~~~~~~~~~~~~~~~liDTpG~ 240 (1250)
||+|++.....+ +..+.|+||||+
T Consensus 149 pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 149 PGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CCeEcceEEEEe---CCCEEEEECcCC
Confidence 999998765543 457999999996
No 208
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.72 E-value=4.1e-16 Score=177.18 Aligned_cols=139 Identities=15% Similarity=0.172 Sum_probs=118.0
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC-CCC
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGP 914 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P 914 (1250)
+.+.+.++++|+. .|.+|...+.+.+.+ .++.+.+.++||++.+ +|+.++|||+.|++++|+++....++ ++|
T Consensus 38 ~~~~~~~~~~Gy~-ev~tP~l~~~~l~~~---sg~~~~~~~~my~~~~--~~~~l~LRP~~~~~~~~~~~~~~~s~~~LP 111 (298)
T cd00771 38 DFLRELQRKRGYQ-EVETPIIYNKELWET---SGHWDHYRENMFPFEE--EDEEYGLKPMNCPGHCLIFKSKPRSYRDLP 111 (298)
T ss_pred HHHHHHHHHcCCE-EEECCeecCHHHHhh---CCCccccccCceEecc--CCceEEEcccCCHHHHHHHHhhccchhhCC
Confidence 3467777899999 799999999998863 4667778899999954 57899999999999999999866554 889
Q ss_pred eeEEEEeceeecCCCCC----CCCCceEEeeEEEecCCCch-hc-hHHHHHHHHHHHHCCCCceEEEeCCCc
Q psy17091 915 KRLWYSGPMFRHERPQY----GRYRQFYQIGVEAIGFPGPD-ID-AELIIMCSRLWKNLNLKNICLELNSIG 980 (1250)
Q Consensus 915 ~r~yy~g~VfR~e~~~~----gr~REf~Q~g~eiig~~~~~-ad-aEvi~l~~~~l~~lgl~~~~i~i~~~~ 980 (1250)
+|+||+|+|||+|.++. +|.|||+|.|+|+||.++.. +| .|++.++.++++.+|+..+.+.+++..
T Consensus 112 lr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~~~i~l~~~~ 183 (298)
T cd00771 112 LRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFDYKVELSTRP 183 (298)
T ss_pred eEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCCcEEEEEEcCh
Confidence 99999999999997753 69999999999999876543 23 379999999999999988999999965
No 209
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.72 E-value=7.4e-17 Score=198.58 Aligned_cols=154 Identities=22% Similarity=0.302 Sum_probs=120.0
Q ss_pred eCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEE
Q psy17091 189 GKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVV 268 (1250)
Q Consensus 189 G~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~v 268 (1250)
|.||||||||+|+|+|.+ ..++++||+|.+.....+.+++.++.+|||||+.+...... -|+. .+.....+.+|++
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~e~v--~~~~l~~~~aDvv 76 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-EEEV--ARDYLLNEKPDLV 76 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch-HHHH--HHHHHhhcCCCEE
Confidence 899999999999999976 46779999999999999999999999999999977542211 1111 1221223578999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHHHHH
Q psy17091 269 ILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348 (1250)
Q Consensus 269 llviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i 348 (1250)
++|+|+++. +++..+...+.+.++|+++|+||+|+.++.......+.+.+.++ .|++++||++|.|++++++++
T Consensus 77 I~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg----~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 77 VNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLG----VPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred EEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcC----CCEEEEECCCCCCHHHHHHHH
Confidence 999999874 55666677777889999999999999755444434455555543 689999999999999999999
Q ss_pred HHHH
Q psy17091 349 NHVY 352 (1250)
Q Consensus 349 ~~~~ 352 (1250)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8764
No 210
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.72 E-value=1.2e-16 Score=165.96 Aligned_cols=152 Identities=17% Similarity=0.154 Sum_probs=100.4
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcce--eccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRV--ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~--~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
+|+++|.+|||||||+++|.+.... ...+..|.+. ..+.+++..+.+|||||..+ +... ...+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~----------~~~~-~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV----ESFEKGNLSFTAFDMSGQGK----------YRGL-WEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce----EEEEECCEEEEEEECCCCHh----------hHHH-HHHH
Confidence 4899999999999999999986422 2234444433 33456778899999999843 2211 2246
Q ss_pred hccCcEEEEEecCCCCCCHHHH-HHHHHHH------HcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 262 ILEANVVILLLDAQQNISAQDI-NIANFIY------ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~-~~~~~~~------~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
++.+|++++|+|++++.+.... ..+..+. ..++|+++|+||+|+.+.....+..+.+..........+++++|
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~S 145 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASN 145 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEee
Confidence 7899999999999986443221 2233222 24799999999999975433222222221100001123689999
Q ss_pred cCCCCChHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINH 350 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~ 350 (1250)
|++|.|+++++++|.+
T Consensus 146 a~~g~gv~~~~~~l~~ 161 (162)
T cd04157 146 ALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCCCCchHHHHHHHhc
Confidence 9999999999999853
No 211
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.72 E-value=1.7e-16 Score=169.99 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=108.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+++|.+|||||||+|++++.+.. ....|+++.+.....+.+++. .+.+|||||+.... .....+.......+++
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~-~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFP-EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCC-cccCCccccccceeEEEECCEEEEEEEEeCCCcccCC-ccchhHHHHHHHhhhc
Confidence 7999999999999999999987643 233555555554455667774 67899999975322 1111222334555678
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh------cCCCEEEEEeCCCCCCCccc-----hhHHh-cCCCCcEecccccC
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFYE-LGIGNPHIISALYG 148 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~D~~~~~~~-----~~~~~-~~~~~~~~iSA~~g 148 (1250)
.+|++++|+|++++.+... ..+.+.+.. .++|+++|+||+|+...... .++.. ....+++++||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 9999999999987433222 223333322 45899999999999654332 12222 22236799999999
Q ss_pred CchhHHHHHHHHhhCCc
Q psy17091 149 NGIKNFLENILTIELPY 165 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~~ 165 (1250)
.|++++++.+.+.+...
T Consensus 160 ~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 160 WHILLLFKELLISATTR 176 (198)
T ss_pred CCHHHHHHHHHHHhhcc
Confidence 99999999998766543
No 212
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.71 E-value=2.1e-16 Score=163.85 Aligned_cols=153 Identities=21% Similarity=0.213 Sum_probs=110.5
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
.||+++|.+|||||||+|++++.+... +..|+++.+.....+.+++. .+.+|||||.. ++.. ....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~-~~~~ 68 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE----------RFRS-LIPS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcH----------HHHH-HHHH
Confidence 379999999999999999999876544 46788888887777777764 57899999972 2221 2234
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHH-Hc--CCcEEEEEeccccCCccc-hHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIY-ES--GRSLIVCVNKWDSIIHNQ-RKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~-~~--~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
.++.+|++++|+|++++.+.++. .++..+. .. +.|+++|+||+|+.+... ..+....+.+.. ..+++++||
T Consensus 69 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa 144 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKEL----NAMFIETSA 144 (161)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHh----CCEEEEEeC
Confidence 67899999999999886544433 2333333 23 489999999999964322 222222222222 378999999
Q ss_pred CCCCChHHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINHV 351 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (1250)
++|.|++++++++.+.
T Consensus 145 ~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 145 KAGHNVKELFRKIASA 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998764
No 213
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.71 E-value=2.4e-16 Score=164.28 Aligned_cols=148 Identities=19% Similarity=0.199 Sum_probs=105.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|.+|||||||+|++++.+.. ....|+++.+.....+..++ ..+.+|||||.. ++......++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~---------~~~~~~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE---------RYRTITTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHHc
Confidence 68999999999999999999987642 22334444344333444444 478999999964 3445566778
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHH---h---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLR---K---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~---~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g 148 (1250)
+.+|++++|+|.++. .....+.+|++ . .+.|+++|+||+|+.+.... .++. .++. +++++||++|
T Consensus 72 ~~~~~~l~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (165)
T cd01865 72 RGAMGFILMYDITNE--ESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASAKEN 148 (165)
T ss_pred cCCcEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999999863 22333333333 2 25789999999999765432 2222 3444 6899999999
Q ss_pred CchhHHHHHHHHhhC
Q psy17091 149 NGIKNFLENILTIEL 163 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~ 163 (1250)
.|++++++.+.+.+.
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (165)
T cd01865 149 INVKQVFERLVDIIC 163 (165)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
No 214
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.71 E-value=1.6e-16 Score=164.98 Aligned_cols=154 Identities=22% Similarity=0.239 Sum_probs=103.2
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||++++++.+.... ..+....+........++. .+.+|||||+.+ |... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~~~ 68 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQ-QLSTYALTLYKHNAKFEGKTILVDFWDTAGQER----------FQTM-HAS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCceeeEEEEEEEEECCEEEEEEEEeCCCchh----------hhhh-hHH
Confidence 5899999999999999999997653222 1221122222233344444 577899999833 3222 235
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHHc--CCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYES--GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~ 337 (1250)
+++.+|++++|+|++++.+.++. .++..+.+. ++|+++|+||+|+.+.. ..+ ...+.+. ...+++++||++
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~-~~~~~~~----~~~~~~~~Sa~~ 142 (161)
T cd04124 69 YYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQK-KFNFAEK----HNLPLYYVSAAD 142 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHH-HHHHHHH----cCCeEEEEeCCC
Confidence 67899999999999987665543 345555443 79999999999985321 111 1122221 136899999999
Q ss_pred CCChHHHHHHHHHHHhh
Q psy17091 338 LNNINSFMESINHVYDS 354 (1250)
Q Consensus 338 g~gv~~l~~~i~~~~~~ 354 (1250)
|.|++++++.+.+...+
T Consensus 143 ~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 143 GTNVVKLFQDAIKLAVS 159 (161)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999776543
No 215
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=9.2e-17 Score=190.94 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=120.3
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCccee---------------ccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVI---------------TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~---------------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
.+.++|+++|++|+|||||+|+|++....+ ....+|+|++.....+.+++.++.++||||+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence 457999999999999999999999642111 12248999999888888888999999999983
Q ss_pred cchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEeccccCCccc-hHHHHHHHHHHh
Q psy17091 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQ-RKIIKNNIKKKL 322 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~l~~~l 322 (1250)
.| ...+...+..+|++++|+|+..++..++..++..+...++| +|+|+||||+.+... .+...+++...+
T Consensus 87 -------~~-~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l 158 (409)
T CHL00071 87 -------DY-VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELL 158 (409)
T ss_pred -------HH-HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 22 23345677899999999999999999999999999999999 778999999986443 334445677666
Q ss_pred ccCCC----CeEEEeecCCCCCh
Q psy17091 323 NFLSF----AMFNFISAIKLNNI 341 (1250)
Q Consensus 323 ~~~~~----~~iv~iSA~~g~gv 341 (1250)
....+ .|++++||++|.++
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHhCCCCCcceEEEcchhhcccc
Confidence 65443 79999999999864
No 216
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.71 E-value=1.7e-16 Score=165.29 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=108.0
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+++++... ....+++|+.+.....+..++.. +.+|||||+.+. ...+. .
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~-~ 68 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF----------TAMRD-L 68 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccc----------hhHHH-H
Confidence 689999999999999999998643 23455667766666667777654 567999998433 22222 3
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEEee
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
+++.+|++++|+|.++..+.++. .++..+.+ .+.|+++|+||+|+.+..... +..+.+.+.+. .+++++|
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~S 144 (164)
T cd04175 69 YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG----CAFLETS 144 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC----CEEEEee
Confidence 66889999999999876544433 24444433 468999999999997543221 22233333332 6899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHVY 352 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (1250)
|++|.|++++++++.+.+
T Consensus 145 a~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 145 AKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999997643
No 217
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.71 E-value=3e-16 Score=163.94 Aligned_cols=156 Identities=22% Similarity=0.158 Sum_probs=107.6
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||+|++.+.+.. ....|.++.+.....+.+++. .+.+|||||+. .+... ..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~-~~ 70 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFN-PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE----------RFRTI-TT 70 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCC-cccccCccceEEEEEEEECCEEEEEEEEeCCchH----------HHHHH-HH
Confidence 589999999999999999999976532 223444444444455566664 67889999983 23222 23
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|++++.+.++. .++..+.. .+.|+++|+||+|+.+.... .+....+.+.. ..+++++|
T Consensus 71 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S 146 (167)
T cd01867 71 AYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEY----GIKFLETS 146 (167)
T ss_pred HHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc----CCEEEEEe
Confidence 567899999999999887554443 23333333 36899999999999753221 11122222222 35899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q psy17091 335 AIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (1250)
|++|.|++++|.++.+.+.
T Consensus 147 a~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 147 AKANINVEEAFFTLAKDIK 165 (167)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987653
No 218
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.71 E-value=1.2e-16 Score=165.31 Aligned_cols=152 Identities=19% Similarity=0.149 Sum_probs=99.9
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
||+++|.+|||||||++++....... ..|.+..+ ...+.+.+..+.+|||||+.+ +.. ....+++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~----------~~~-~~~~~~~ 65 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIPTIGFN--VETVTYKNLKFQVWDLGGQTS----------IRP-YWRCYYS 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCCccCcC--eEEEEECCEEEEEEECCCCHH----------HHH-HHHHHhc
Confidence 58999999999999999997655432 22222222 234556778899999999942 221 1235678
Q ss_pred cCcEEEEEecCCCCCCHH--HHHHHHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCC
Q psy17091 264 EANVVILLLDAQQNISAQ--DINIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~--d~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g 338 (1250)
.+|++++|+|+++..+.. ...+...+.. .++|+++|+||+|+.+.....+..+.+..........+++++||++|
T Consensus 66 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd04151 66 NTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKG 145 (158)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCC
Confidence 999999999998753222 1223222222 37999999999999754333333332211111111247999999999
Q ss_pred CChHHHHHHHHH
Q psy17091 339 NNINSFMESINH 350 (1250)
Q Consensus 339 ~gv~~l~~~i~~ 350 (1250)
.|++++++++.+
T Consensus 146 ~gi~~l~~~l~~ 157 (158)
T cd04151 146 EGLDEGMDWLVN 157 (158)
T ss_pred CCHHHHHHHHhc
Confidence 999999999854
No 219
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=2.9e-16 Score=167.87 Aligned_cols=158 Identities=20% Similarity=0.154 Sum_probs=108.0
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||++++.+.+.......+.++.+.....+.+++ ..+.+|||||+. .+... ...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~-~~~ 69 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE----------RFRSV-THA 69 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH----------HHHHh-hHH
Confidence 48999999999999999999987643332333334444444455555 367789999983 23221 234
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|+++..+.++. .++..+.+ .+.|+++|+||+|+..+... .+..+.+.... ..+++++||
T Consensus 70 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~----~~~~~e~Sa 145 (191)
T cd04112 70 YYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEY----GVPFMETSA 145 (191)
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHc----CCeEEEEeC
Confidence 67889999999999886444332 23444443 36899999999999643221 12223333322 358999999
Q ss_pred CCCCChHHHHHHHHHHHhhc
Q psy17091 336 IKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~ 355 (1250)
++|.|++++++++.+.+...
T Consensus 146 ~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 146 KTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999998776543
No 220
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.71 E-value=2.6e-16 Score=164.17 Aligned_cols=147 Identities=22% Similarity=0.222 Sum_probs=108.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|++++.... ....++.+.+.....+..++. .+.+|||||.. ++......++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---------RFRTITSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH---------hHHHHHHHHh
Confidence 58999999999999999999987643 344566666666666666664 68899999964 3444556678
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHH---h---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLR---K---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~---~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g 148 (1250)
+.+|++++|+|.++. .....+.+|+. . .+.|+++|+||+|+...... .++. ..+. +++++||++|
T Consensus 73 ~~~~~ii~v~d~~~~--~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (166)
T cd01869 73 RGAHGIIIVYDVTDQ--ESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETSAKNA 149 (166)
T ss_pred CcCCEEEEEEECcCH--HHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 899999999999873 23333444443 2 35799999999998654433 2222 2343 6899999999
Q ss_pred CchhHHHHHHHHhh
Q psy17091 149 NGIKNFLENILTIE 162 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l 162 (1250)
.|++++++.+.+.+
T Consensus 150 ~~v~~~~~~i~~~~ 163 (166)
T cd01869 150 TNVEQAFMTMAREI 163 (166)
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998765
No 221
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.71 E-value=2.1e-16 Score=163.83 Aligned_cols=148 Identities=24% Similarity=0.240 Sum_probs=104.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|.+|||||||+|++++... ...+++++.+.....+.+++. .+.+|||||.. ++......++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~l~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE---------EYSAMRDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCc---------chHHHHHHHH
Confidence 5899999999999999999998763 344555555554555666664 57789999975 3344555678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++++|+|..+..+..+ ..+...+.+ .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.|
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 149 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGI-PYIETSAKTRQG 149 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCC-eEEEecCCCCCC
Confidence 89999999999886332222 112222222 46899999999998764322 2222 2333 689999999999
Q ss_pred hhHHHHHHHHhh
Q psy17091 151 IKNFLENILTIE 162 (1250)
Q Consensus 151 i~~L~~~i~~~l 162 (1250)
++++++.+.+.+
T Consensus 150 i~~l~~~l~~~~ 161 (162)
T cd04138 150 VEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999997643
No 222
>KOG0092|consensus
Probab=99.71 E-value=8.2e-17 Score=160.88 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=113.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|..|||||||+-++...++... ..|.+........+..++ .++.+|||+|+.+ |.....
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER----------y~slap 72 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHEN-IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER----------YHSLAP 72 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccc-cccccccEEEEEEEEeCCcEEEEEEEEcCCccc----------cccccc
Confidence 368999999999999999999997665443 344444445556666666 4667899999954 333222
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHHcCCc---EEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYESGRS---LIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~~~~p---~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.++|+|+++|+|+|+++.-+.+.. .+++.+.+..-| +.+|+||+||.+.... ..++....... ...+++++|
T Consensus 73 -MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V--~~~ea~~yAe~-~gll~~ETS 148 (200)
T KOG0092|consen 73 -MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREV--EFEEAQAYAES-QGLLFFETS 148 (200)
T ss_pred -ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccc--cHHHHHHHHHh-cCCEEEEEe
Confidence 578999999999999997554443 355666554333 5569999999873322 12222222221 347899999
Q ss_pred cCCCCChHHHHHHHHHHHhhcc
Q psy17091 335 AIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
||||.|++++|..|.+.++...
T Consensus 149 AKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 149 AKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred cccccCHHHHHHHHHHhccCcc
Confidence 9999999999999988876654
No 223
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.71 E-value=1.7e-16 Score=165.02 Aligned_cols=149 Identities=20% Similarity=0.195 Sum_probs=106.9
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
..+|+++|.+|||||||+|++++... +..+++++.+.......+++. .+.+|||||+. ++......+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 70 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE---------EFSAMREQY 70 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCc---------chhHHHHHH
Confidence 35899999999999999999997653 455666666655555667664 68899999976 233445566
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccC
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g 148 (1250)
++.+|++++|+|.++..+... ..+...+.+ .+.|+++|+||+|+...... .++. ..+. +++++||++|
T Consensus 71 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (164)
T cd04145 71 MRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIETSAKDR 149 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence 789999999999987432222 122222222 46799999999998765432 2222 3344 7899999999
Q ss_pred CchhHHHHHHHHhh
Q psy17091 149 NGIKNFLENILTIE 162 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l 162 (1250)
.|++++++.+.+.+
T Consensus 150 ~~i~~l~~~l~~~~ 163 (164)
T cd04145 150 LNVDKAFHDLVRVI 163 (164)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998643
No 224
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.71 E-value=2.6e-16 Score=162.90 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=99.9
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
+||+++|.+|||||||++++...+.. +..|.+..+ ...+.+.+..+.+|||||+.+ +... ...++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~--~~~~~~~~~~~~l~D~~G~~~----------~~~~-~~~~~ 65 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN--VETVEYKNISFTVWDVGGQDK----------IRPL-WRHYF 65 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcc--eEEEEECCEEEEEEECCCCHh----------HHHH-HHHHh
Confidence 48999999999999999999754432 233322222 234566778899999999932 2211 23567
Q ss_pred ccCcEEEEEecCCCCCCHHH-HHHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCC
Q psy17091 263 LEANVVILLLDAQQNISAQD-INIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d-~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~ 337 (1250)
+++|++++|+|+++..+..+ ...+..+.. .+.|+++|+||+|+.+.....+..+.+...........++++||++
T Consensus 66 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~ 145 (159)
T cd04150 66 QNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATS 145 (159)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCC
Confidence 99999999999987533222 222333322 3589999999999965433223223221100011234678999999
Q ss_pred CCChHHHHHHHHH
Q psy17091 338 LNNINSFMESINH 350 (1250)
Q Consensus 338 g~gv~~l~~~i~~ 350 (1250)
|.|++++|++|.+
T Consensus 146 g~gv~~~~~~l~~ 158 (159)
T cd04150 146 GDGLYEGLDWLSN 158 (159)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999998853
No 225
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=2.1e-16 Score=164.72 Aligned_cols=155 Identities=19% Similarity=0.152 Sum_probs=106.8
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||++++.+...... ..+..+.+.....+.+++. .+.+|||||+ +.+.. ...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~-~~~ 70 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER-QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ----------ERFRT-ITQ 70 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc-CCCccceEEEEEEEEECCEEEEEEEEECCCh----------HHHHH-HHH
Confidence 58999999999999999999987543222 2233334444455666664 6789999997 33332 234
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
..++.+|++++|+|+++..+.+.. .++..+.. .+.|+++|+||+|+.+.... .+....+.+ ..+..+++++|
T Consensus 71 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~e~S 147 (165)
T cd01864 71 SYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAE---KNGMLAVLETS 147 (165)
T ss_pred HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH---HcCCcEEEEEE
Confidence 567889999999999987554443 34444443 36899999999999754321 122222333 23345789999
Q ss_pred cCCCCChHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHV 351 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~ 351 (1250)
|++|.|++++++.+.+.
T Consensus 148 a~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 148 AKESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999998653
No 226
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.71 E-value=4.4e-16 Score=162.33 Aligned_cols=154 Identities=20% Similarity=0.175 Sum_probs=104.2
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+|++.+.+.... ..|.++.+.....+..++ ..+.+|||||+. .+... ...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~----------~~~~~-~~~ 69 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE----------RYRTI-TTA 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHH-HHH
Confidence 6899999999999999999998664222 233333333333444444 468889999983 23222 235
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|+++..+.+.. .++..+.. .+.|+++|+||+|+.+.... .+...++.+.++ .+++++||
T Consensus 70 ~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~Sa 145 (165)
T cd01865 70 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLG----FEFFEASA 145 (165)
T ss_pred HccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC----CEEEEEEC
Confidence 67999999999999876433322 23344433 36899999999999754321 122233333332 48999999
Q ss_pred CCCCChHHHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINHVY 352 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~ 352 (1250)
++|.|++++++++.+.+
T Consensus 146 ~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 146 KENINVKQVFERLVDII 162 (165)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999997764
No 227
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.71 E-value=1.8e-16 Score=168.93 Aligned_cols=152 Identities=24% Similarity=0.298 Sum_probs=118.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCccc---------------ccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHH
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALV---------------ANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGI 68 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v---------------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 68 (1250)
+|+++|.+|+|||||+|+|++...... ....++|.+.......+.+..+.+|||||+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~------- 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE------- 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH-------
Confidence 489999999999999999998764321 1234667777777778888999999999975
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-------hhHH-hc-----
Q psy17091 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFY-EL----- 135 (1250)
Q Consensus 69 ~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-------~~~~-~~----- 135 (1250)
.+...+..++..+|++++|+|+.++.......+...+...++|+++|+||+|+...... .+.. ..
T Consensus 74 --~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (189)
T cd00881 74 --DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST 151 (189)
T ss_pred --HHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch
Confidence 34455666778999999999999877777777777777788999999999999763322 1112 11
Q ss_pred --------CCCCcEecccccCCchhHHHHHHHHhhCC
Q psy17091 136 --------GIGNPHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 136 --------~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
...+++++||++|.|++++++.+...+++
T Consensus 152 ~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 152 KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 23467999999999999999999987753
No 228
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.71 E-value=2.9e-16 Score=165.98 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=104.0
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
.+||+++|.+|||||||++++...+... ..|.+..+ ...+..++..+.+|||||+. ++... ...+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~~--~~~~~~~~~~~~i~D~~Gq~----------~~~~~-~~~~ 81 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFN--VETVEYKNISFTVWDVGGQD----------KIRPL-WRHY 81 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCccee--EEEEEECCEEEEEEECCCCH----------HHHHH-HHHH
Confidence 5899999999999999999998654322 22322222 23466778899999999983 23222 2346
Q ss_pred hccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccC----CCCeEEE
Q psy17091 262 ILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL----SFAMFNF 332 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~----~~~~iv~ 332 (1250)
++++|++|+|+|+++..+..+. ..+..+.. .+.|+++|+||+|+.+....++ +.+.++.. +...+++
T Consensus 82 ~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~l~l~~~~~~~~~~~~ 157 (181)
T PLN00223 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLHSLRQRHWYIQS 157 (181)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHH----HHHHhCccccCCCceEEEe
Confidence 7899999999999976433221 12222221 3689999999999976543333 33333221 1235678
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q psy17091 333 ISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+||++|+|++++|+++.+.+.
T Consensus 158 ~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred ccCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999977654
No 229
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.71 E-value=2.6e-16 Score=168.45 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=110.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.|+++|.+|||||||++++...... ....++++.+.....+.+++ ..+.+|||||.+ ++...+..+++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe---------~~~~l~~~y~~ 71 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE---------RFNSITSAYYR 71 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch---------hhHHHHHHHhc
Confidence 5899999999999999999977632 22345556677667777877 578899999975 55566777899
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCch
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~gi 151 (1250)
++|++|+|+|.++..+... ..|.+.++. .+.|+++|+||+|+.....+ .++. ....-.++++||++|.|+
T Consensus 72 ~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV 151 (202)
T cd04120 72 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNV 151 (202)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence 9999999999987533332 224444443 35799999999999754443 2222 211125789999999999
Q ss_pred hHHHHHHHHhhC
Q psy17091 152 KNFLENILTIEL 163 (1250)
Q Consensus 152 ~~L~~~i~~~l~ 163 (1250)
+++++++.+.+.
T Consensus 152 ~e~F~~l~~~~~ 163 (202)
T cd04120 152 DEIFLKLVDDIL 163 (202)
T ss_pred HHHHHHHHHHHH
Confidence 999999987664
No 230
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.71 E-value=2.4e-16 Score=164.02 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=106.2
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+|++.+... ...+++|+.+.....+..++. .+.+|||||+.+.. ... ..
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------~~~-~~ 67 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS----------AMR-DQ 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccch----------HHH-HH
Confidence 4899999999999999999997653 234455666665555666654 56789999985432 111 24
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
+++.+|++++|+|+++..+.+... +...+.+ .++|+++|+||+|+.+.... .+....+.+.. ..+++++|
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S 143 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQW----GCPFLETS 143 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHc----CCEEEEee
Confidence 567899999999998864433322 2233322 36899999999999753222 12222222222 26899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q psy17091 335 AIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (1250)
|++|.|++++++++.+.+.
T Consensus 144 a~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 144 AKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 9999999999999976553
No 231
>PLN03118 Rab family protein; Provisional
Probab=99.71 E-value=1.4e-16 Score=172.99 Aligned_cols=157 Identities=19% Similarity=0.138 Sum_probs=107.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+|+|.+|||||||+++|++.......+.. +.+.....+.+++ ..+.||||||+.+. ... .
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------~~~-~ 79 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTI--GVDFKIKQLTVGGKRLKLTIWDTAGQERF----------RTL-T 79 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCc--eeEEEEEEEEECCEEEEEEEEECCCchhh----------HHH-H
Confidence 3689999999999999999999987653333333 3333334455555 46789999998432 222 2
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHH-HHHH----cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IAN-FIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFN 331 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~-~~~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv 331 (1250)
..+++.+|++++|+|+++..+.++.. ++. .+.. .+.|+++|+||+|+....... +....+... ...+++
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~----~~~~~~ 155 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE----HGCLFL 155 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH----cCCEEE
Confidence 35678999999999999875555443 222 2221 357999999999997543321 111222222 136899
Q ss_pred EeecCCCCChHHHHHHHHHHHhh
Q psy17091 332 FISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 332 ~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
++||++|.|++++|+++...+..
T Consensus 156 e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 156 ECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999877644
No 232
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.71 E-value=3.1e-16 Score=163.38 Aligned_cols=147 Identities=24% Similarity=0.211 Sum_probs=108.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|++|||||||+|++++.+.. ....|+++.+.....+..++. .+.+|||||+. ++......++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE---------RYRAITSAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCChH---------HHHHHHHHHH
Confidence 58999999999999999999987743 445677777766667777764 68899999964 3444556677
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHh------cCCCEEEEEeCCCCCCCccc-----hhHHh-cCCCCcEecccccC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFYE-LGIGNPHIISALYG 148 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~------~~~p~ilv~NK~D~~~~~~~-----~~~~~-~~~~~~~~iSA~~g 148 (1250)
+.++++++|+|.++..+ ...+.+|+.. .+.|+++|+||+|+...... ..+.. .+. .++++||++|
T Consensus 74 ~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 150 (165)
T cd01868 74 RGAVGALLVYDITKKQT--FENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETSALDG 150 (165)
T ss_pred CCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 89999999999986332 2333344432 25799999999998754332 22222 233 6899999999
Q ss_pred CchhHHHHHHHHhh
Q psy17091 149 NGIKNFLENILTIE 162 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l 162 (1250)
.|++++++.+.+.+
T Consensus 151 ~~v~~l~~~l~~~i 164 (165)
T cd01868 151 TNVEEAFKQLLTEI 164 (165)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998654
No 233
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.71 E-value=1.6e-16 Score=167.10 Aligned_cols=154 Identities=19% Similarity=0.129 Sum_probs=103.4
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
..+|+++|.+|||||||++++.+.......+..|.+ ...+.+++..+.+|||||+.. +... ...+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~~~----------~~~~-~~~~ 79 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQES----------LRSS-WNTY 79 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCCHH----------HHHH-HHHH
Confidence 578999999999999999999876543333333322 345667788999999999832 2211 2246
Q ss_pred hccCcEEEEEecCCCCCCHHHH-HHHHHHH-H---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 262 ILEANVVILLLDAQQNISAQDI-NIANFIY-E---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~-~~~~~~~-~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
++.+|++++|+|++++.+.... ..+..+. . .++|+++++||+|+.+....+++.+.+..........+++++||+
T Consensus 80 ~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~ 159 (174)
T cd04153 80 YTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCAL 159 (174)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccC
Confidence 7899999999999886432221 2233332 2 368999999999986533333333332210001123479999999
Q ss_pred CCCChHHHHHHHHH
Q psy17091 337 KLNNINSFMESINH 350 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~ 350 (1250)
+|.|+++++++|.+
T Consensus 160 ~g~gi~e~~~~l~~ 173 (174)
T cd04153 160 TGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999853
No 234
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.71 E-value=1.4e-16 Score=164.63 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=105.4
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
||+++|.+|||||||+|++++.+.....+..+.+. ..+.+++..+.+|||||+... .. .....++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~----------~~-~~~~~~~ 65 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV----ETVEYKNVSFTVWDVGGQDKI----------RP-LWKHYYE 65 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce----EEEEECCEEEEEEECCCChhh----------HH-HHHHHhc
Confidence 58999999999999999999876333333333333 345667889999999998432 11 1234668
Q ss_pred cCcEEEEEecCCCCCCHHH-HHHHHHHH----HcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCC
Q psy17091 264 EANVVILLLDAQQNISAQD-INIANFIY----ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~d-~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g 338 (1250)
.+|++++|+|++++-+... ...+..+. ..+.|+++|+||+|+.......+..+.+..........+++++||++|
T Consensus 66 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd00878 66 NTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTG 145 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCC
Confidence 8999999999997632222 12222222 247999999999999865544444444333222233568999999999
Q ss_pred CChHHHHHHHHH
Q psy17091 339 NNINSFMESINH 350 (1250)
Q Consensus 339 ~gv~~l~~~i~~ 350 (1250)
.|+++++++|..
T Consensus 146 ~gv~~~~~~l~~ 157 (158)
T cd00878 146 DGLDEGLDWLLQ 157 (158)
T ss_pred CCHHHHHHHHhh
Confidence 999999998854
No 235
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.71 E-value=4.4e-17 Score=171.62 Aligned_cols=152 Identities=27% Similarity=0.338 Sum_probs=111.3
Q ss_pred EEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC-CEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCE
Q psy17091 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDI 85 (1250)
Q Consensus 7 lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~ 85 (1250)
++|++|||||||+|+|++.+. .+++++++|+++..+.+.++ +..+.+|||||+...... .+.+..++...++.+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc--CCCccHHHHHHHhccCE
Confidence 589999999999999999876 47788999999988888888 899999999998532110 11223345566788999
Q ss_pred EEEEEeCCCCC-----C-hhh-HHHHHHHHh----------cCCCEEEEEeCCCCCCCccchh-----HHhcCCCCcEec
Q psy17091 86 IIFIVDGRQGL-----V-EQD-KLITNFLRK----------SGQPIVLVINKSENINSSISLD-----FYELGIGNPHII 143 (1250)
Q Consensus 86 il~v~D~~~~~-----~-~~~-~~~~~~l~~----------~~~p~ilv~NK~D~~~~~~~~~-----~~~~~~~~~~~i 143 (1250)
+++|+|+++.. . ..+ ..+...+.. .++|+++|+||+|+.......+ ........++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 99999998752 1 111 222222221 3689999999999976554422 222334468999
Q ss_pred ccccCCchhHHHHHHHHh
Q psy17091 144 SALYGNGIKNFLENILTI 161 (1250)
Q Consensus 144 SA~~g~gi~~L~~~i~~~ 161 (1250)
||+++.|++++++.+...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999988653
No 236
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.70 E-value=2e-16 Score=170.42 Aligned_cols=161 Identities=22% Similarity=0.141 Sum_probs=111.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcc--eeccCCCCcceeeEEEEEEEc---------------------------C----
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENR--VITYDTPGTTRDSIKSLFEYN---------------------------N---- 229 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~--~~~~~~~gtT~~~~~~~~~~~---------------------------~---- 229 (1250)
++|+++|+.++|||||+.+|.+... .......|.|.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999986521 111112233333322222221 2
Q ss_pred --eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCC-CCHHHHHHHHHHHHcCC-cEEEEEecccc
Q psy17091 230 --KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-ISAQDINIANFIYESGR-SLIVCVNKWDS 305 (1250)
Q Consensus 230 --~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~-~~~~d~~~~~~~~~~~~-p~iiv~NK~Dl 305 (1250)
..+.+|||||+ +.|. ...+.++..+|++++|+|++++ ...+....+..+...+. |+++|+||+|+
T Consensus 81 ~~~~i~~iDtPG~----------~~~~-~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 81 LVRHVSFVDCPGH----------EILM-ATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cccEEEEEECCCh----------HHHH-HHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 68999999997 3332 3455677889999999999984 45555666666655554 79999999999
Q ss_pred CCccchHHHHHHHHHHhccC--CCCeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 306 IIHNQRKIIKNNIKKKLNFL--SFAMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 306 ~~~~~~~~~~~~l~~~l~~~--~~~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
.+........+.+++.+... ...+++++||++|.|+++|++.+.+.++.
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 86544444455565555422 34689999999999999999999776543
No 237
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.70 E-value=2.7e-16 Score=167.96 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=107.1
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
||+++|.+|||||||+++|..... ...+++|+.+.....+..++.. +.+|||||+.+ +...+ ..+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~-~~~ 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE----------YTALR-DQW 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchh----------hHHHH-HHH
Confidence 589999999999999999996543 2345556555554555666654 77899999833 32222 246
Q ss_pred hccCcEEEEEecCCCCCCHHHH-HHHHHHHH------cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEEe
Q psy17091 262 ILEANVVILLLDAQQNISAQDI-NIANFIYE------SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~-~~~~~~~~------~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~i 333 (1250)
++.+|++++|+|.++..+..+. .++..+.. .+.|+++|+||+|+.+..... .....+.+.+ ..+++++
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~----~~~~~e~ 143 (190)
T cd04144 68 IREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRL----GCEFIEA 143 (190)
T ss_pred HHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHh----CCEEEEe
Confidence 7899999999999887554443 34444432 368999999999996533221 1122222222 2589999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||++|.|++++|+++.+.+..
T Consensus 144 SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 144 SAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876543
No 238
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.70 E-value=4.2e-16 Score=162.44 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=107.6
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||+|++++.+... ...|.++.+.....+..++. .+.+|||||+. ++.... .
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~-~ 70 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE----------RYRAIT-S 70 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHH-H
Confidence 4799999999999999999999876432 34555555555566666664 57889999983 232222 2
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.++++++|+|+++..+.++.. ++..+.+ .+.|+++|+||+|+...... .+..+.+... ...+++++|
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~S 146 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK----NGLSFIETS 146 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHH----cCCEEEEEE
Confidence 4668999999999999765544432 3333333 35899999999999753221 1122222221 236899999
Q ss_pred cCCCCChHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHV 351 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~ 351 (1250)
|++|.|++++++++.+.
T Consensus 147 a~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 147 ALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998654
No 239
>KOG0394|consensus
Probab=99.70 E-value=8.1e-17 Score=158.65 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=121.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||.|+|.+|||||||+|++...+... .....+..|.....+.++++. +++|||+|+ |+|....+
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~-qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ----------ERFqsLg~ 76 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQ-QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ----------ERFQSLGV 76 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHH-HhccccchhheeeEEEEcCeEEEEEEEecccH----------HHhhhccc
Confidence 46999999999999999999999755432 244445567777777777764 566999999 55554444
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHHHHHH--HHH------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDINIANF--IYE------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMF 330 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~~~~~--~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~i 330 (1250)
..+|+||.+++|+|....-+...+.-++. +.. ...|+||++||+|+........-.+.........+..|+
T Consensus 77 -aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipy 155 (210)
T KOG0394|consen 77 -AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPY 155 (210)
T ss_pred -ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCcee
Confidence 56699999999999988755555543321 111 357999999999997644344444555566666677899
Q ss_pred EEeecCCCCChHHHHHHHHHHHhhcc
Q psy17091 331 NFISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 331 v~iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+++|||.+.||++.|..+....-...
T Consensus 156 fEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 156 FETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred EEecccccccHHHHHHHHHHHHHhcc
Confidence 99999999999999999877655443
No 240
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.70 E-value=3.2e-16 Score=164.41 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=107.9
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||++++.+.+.. ..+..|..+.....+..++. .+.+|||||..+ +.... .
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~-~ 68 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE----------FTAMR-D 68 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchh----------hHHHh-H
Confidence 479999999999999999999976542 23333444444445666664 577899999832 32222 2
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEEe
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~i 333 (1250)
.+++.+|++++|+|+++..+.+... +...+.+ .++|+++|+||+|+.+..... +....+.+.. ..+++++
T Consensus 69 ~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~----~~~~~e~ 144 (172)
T cd04141 69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF----NCPFFET 144 (172)
T ss_pred HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh----CCEEEEE
Confidence 4678999999999999987766654 2233332 468999999999986533221 1222222222 3689999
Q ss_pred ecCCCCChHHHHHHHHHHHh
Q psy17091 334 SAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~ 353 (1250)
||++|.|++++|+++...+.
T Consensus 145 Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 145 SAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred ecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999976554
No 241
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=4e-16 Score=162.64 Aligned_cols=150 Identities=17% Similarity=0.083 Sum_probs=107.3
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
..+|+++|.+|||||||++++.+.... ....+..+.+.....+.+++ ..+.+|||||.. .+......+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFS-ERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE---------RFRTITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCc-ccCCCccceEEEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHH
Confidence 468999999999999999999876532 22233444555556667777 478999999954 444556667
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
++.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+...++++||++|.
T Consensus 73 ~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (165)
T cd01864 73 YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQ 152 (165)
T ss_pred hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCC
Confidence 889999999999987433222 233333333 36789999999999765432 2222 3344467999999999
Q ss_pred chhHHHHHHHHh
Q psy17091 150 GIKNFLENILTI 161 (1250)
Q Consensus 150 gi~~L~~~i~~~ 161 (1250)
|++++++.+.+.
T Consensus 153 ~v~~~~~~l~~~ 164 (165)
T cd01864 153 NVEEAFLLMATE 164 (165)
T ss_pred CHHHHHHHHHHh
Confidence 999999998764
No 242
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.70 E-value=4.1e-16 Score=165.04 Aligned_cols=155 Identities=20% Similarity=0.190 Sum_probs=106.3
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc------------CeeEEEEecCCCCCCCcchhh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN------------NKKYILIDTAGIRRRNKTFEV 249 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~~ 249 (1250)
.+||+++|.+|||||||++++.+... .....+.++.+.....+.+. ...+.+|||||+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------- 73 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF-NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ--------- 73 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh---------
Confidence 58999999999999999999987643 22233434444444444443 256889999998
Q ss_pred HHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhc
Q psy17091 250 IEKFSVIKTLKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLN 323 (1250)
Q Consensus 250 ~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~ 323 (1250)
+++... ...+++.+|++++|+|+++..+.++.. ++..+.. .+.|+++|+||+|+.+.... .+..+++.+..
T Consensus 74 -~~~~~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~- 150 (180)
T cd04127 74 -ERFRSL-TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY- 150 (180)
T ss_pred -HHHHHH-HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc-
Confidence 334322 235678999999999999865544432 3333433 26799999999999754222 12223333332
Q ss_pred cCCCCeEEEeecCCCCChHHHHHHHHHHH
Q psy17091 324 FLSFAMFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 324 ~~~~~~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
..+++++||++|.|++++++++.+.+
T Consensus 151 ---~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 151 ---GIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred ---CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 25899999999999999999997654
No 243
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.70 E-value=3e-16 Score=162.93 Aligned_cols=152 Identities=22% Similarity=0.222 Sum_probs=103.9
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc----CeeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN----NKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+||+++|.+|||||||+|++.+.... ....|.++.+.....+.++ ...+.+|||||+ +.+... .
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~-~ 68 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ----------EEFDAI-T 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch----------HHHHHh-H
Confidence 48999999999999999999976432 2233444455444445554 357889999997 333322 2
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEEee
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE--SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
..+++.+|++++|+|+++..+.++.. ++..+.. .+.|+++|+||+|+.+..... +..+.+.+.++ .+++++|
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~----~~~~~~S 144 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ----LPLFRTS 144 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcC----CeEEEEE
Confidence 35678999999999998864444332 2222222 379999999999997543321 12223333332 5899999
Q ss_pred cCCCCChHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINH 350 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~ 350 (1250)
|++|.|++++++++..
T Consensus 145 a~~~~~v~~l~~~l~~ 160 (162)
T cd04106 145 VKDDFNVTELFEYLAE 160 (162)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999998854
No 244
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=3.7e-16 Score=160.86 Aligned_cols=161 Identities=23% Similarity=0.340 Sum_probs=124.2
Q ss_pred EEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc-CeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccC
Q psy17091 187 IVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEA 265 (1250)
Q Consensus 187 ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~a 265 (1250)
++|.+|+|||||+|+|++......++.+++|.+......... +..+.+|||||+.......... .......++.+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~----~~~~~~~~~~~ 76 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER----EELARRVLERA 76 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH----HHHHHHHHHhC
Confidence 589999999999999999877767788899988877776665 6799999999997765322111 12334566889
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHH
Q psy17091 266 NVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFM 345 (1250)
Q Consensus 266 d~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~ 345 (1250)
|++++|+|++.........+.......+.|+++|+||+|+..........+............+++++||+++.|+++++
T Consensus 77 d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 77 DLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 99999999999888777776677777899999999999998765444332222223334456799999999999999999
Q ss_pred HHHHHH
Q psy17091 346 ESINHV 351 (1250)
Q Consensus 346 ~~i~~~ 351 (1250)
+++.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 998764
No 245
>PRK12736 elongation factor Tu; Reviewed
Probab=99.70 E-value=1.8e-16 Score=187.63 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=116.4
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCc------cee---------ccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGEN------RVI---------TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~------~~~---------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
++.++|+++|++++|||||+++|++.. ... .....|+|.+.....+..++.++.+|||||+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh---- 85 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH---- 85 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH----
Confidence 457999999999999999999998631 111 1126799999987777778889999999998
Q ss_pred cchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEeccccCCccchH-HHHHHHHHHh
Q psy17091 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQRK-IIKNNIKKKL 322 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~-~~~~~l~~~l 322 (1250)
++|. ..+...+..+|++++|+|+++++..++..++..+...++| +|+|+||||+.+..+.. ...+++...+
T Consensus 86 ------~~f~-~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l 158 (394)
T PRK12736 86 ------ADYV-KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELL 158 (394)
T ss_pred ------HHHH-HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 3343 3345666889999999999999999999999999999999 67899999998543332 3444666665
Q ss_pred ccCC----CCeEEEeecCCCC
Q psy17091 323 NFLS----FAMFNFISAIKLN 339 (1250)
Q Consensus 323 ~~~~----~~~iv~iSA~~g~ 339 (1250)
.... ..|++++||++|.
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 159 SEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHhCCCcCCccEEEeeccccc
Confidence 5444 3699999999984
No 246
>COG2262 HflX GTPases [General function prediction only]
Probab=99.70 E-value=2.1e-16 Score=176.70 Aligned_cols=162 Identities=30% Similarity=0.413 Sum_probs=128.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC-CEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.|.|++||.+|+|||||||+|++.... +.+..+.|-|+....+.+. |+.+.+-||-||...-+..+.+.| +.++...
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AF-ksTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAF-KSTLEEV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHH-HHHHHHh
Confidence 379999999999999999999977654 7888999999999998887 589999999999877666676666 5566678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccchhHHhcCCCCcEecccccCCchhHHHH
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLE 156 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~ 156 (1250)
.+||++|+|+|++++..... ....+.|.. ..+|+|+|+||+|+............+...++++||++|.|++.|++
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLDLLRE 349 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCHHHHHH
Confidence 89999999999998633222 234555555 46899999999998766554233332333689999999999999999
Q ss_pred HHHHhhCCc
Q psy17091 157 NILTIELPY 165 (1250)
Q Consensus 157 ~i~~~l~~~ 165 (1250)
.|...+...
T Consensus 350 ~i~~~l~~~ 358 (411)
T COG2262 350 RIIELLSGL 358 (411)
T ss_pred HHHHHhhhc
Confidence 999877643
No 247
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.70 E-value=6.2e-16 Score=164.02 Aligned_cols=158 Identities=20% Similarity=0.165 Sum_probs=110.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||+.++...... ....+..+.+.....+..++. .+.+|||||+ +.|....
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~----------~~~~~l~- 72 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ----------GRFCTIF- 72 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCc----------HHHHHHH-
Confidence 3689999999999999999999975432 212233455555556666764 5677999999 3343332
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
..+++.+|++++|+|.++..+.++.. ++..+.+ .+.|+|+|+||.|+....... .++.+...... ..+++++||
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~--~~~~~~~a~~~-~~~~~e~SA 149 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA--TEQAQAYAERN-GMTFFEVSP 149 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC--HHHHHHHHHHc-CCEEEEecC
Confidence 25678999999999999986665554 4444543 478999999999996532221 12222222222 368999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q psy17091 336 IKLNNINSFMESINHVYD 353 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (1250)
++|.||+++|+++.+.+.
T Consensus 150 k~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 150 LCNFNITESFTELARIVL 167 (189)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999976553
No 248
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.70 E-value=3.5e-16 Score=167.62 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=105.8
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccc---------------cCCCcceeeeEEEEEECCEEEEEEecCCCCcchhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVA---------------NYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~---------------~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 66 (1250)
..+|+++|.+|||||||+|+|++....+.. ...++|.+.....+.+++..+.+|||||+.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~----- 76 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA----- 76 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH-----
Confidence 358999999999999999999974222222 225677777777788889999999999975
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc------hhHH-hc----
Q psy17091 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS------LDFY-EL---- 135 (1250)
Q Consensus 67 ~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~------~~~~-~~---- 135 (1250)
++...+..+++.+|++++|+|++++.......+...+...++|+++|+||+|+...... .+++ ..
T Consensus 77 ----~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (194)
T cd01891 77 ----DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATE 152 (194)
T ss_pred ----HHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 45556777889999999999998866555555566666678999999999998653321 2222 11
Q ss_pred ---CCCCcEecccccCCchhH
Q psy17091 136 ---GIGNPHIISALYGNGIKN 153 (1250)
Q Consensus 136 ---~~~~~~~iSA~~g~gi~~ 153 (1250)
+. +++++||++|.|+.+
T Consensus 153 ~~~~~-~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 153 EQLDF-PVLYASAKNGWASLN 172 (194)
T ss_pred ccCcc-CEEEeehhccccccc
Confidence 22 678999999977643
No 249
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.70 E-value=2.4e-16 Score=166.57 Aligned_cols=148 Identities=26% Similarity=0.371 Sum_probs=108.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCC-CcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchh-hHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK-KGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~-~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~ 79 (1250)
.++|+++|.+|||||||+|+|++.. ...++..+++|+++..... + ..+.+|||||+..... ......+......+
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 3699999999999999999999875 4557788899988765443 3 3799999999853321 11122333333333
Q ss_pred hh---cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-------hhHHh-cCC-CCcEeccccc
Q psy17091 80 II---ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFYE-LGI-GNPHIISALY 147 (1250)
Q Consensus 80 ~~---~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-------~~~~~-~~~-~~~~~iSA~~ 147 (1250)
++ .+|++++|+|++++++..+..+.+++...++|+++|+||+|+...... .+.+. .+. .+++++||++
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~ 174 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLK 174 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCC
Confidence 43 468999999999888888888888888889999999999998754322 12222 221 2689999999
Q ss_pred CCchh
Q psy17091 148 GNGIK 152 (1250)
Q Consensus 148 g~gi~ 152 (1250)
|+|++
T Consensus 175 g~gi~ 179 (179)
T TIGR03598 175 KTGID 179 (179)
T ss_pred CCCCC
Confidence 99974
No 250
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.70 E-value=4.2e-16 Score=167.37 Aligned_cols=160 Identities=24% Similarity=0.376 Sum_probs=117.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCC-CcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcch-hhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV-KKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~-~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~ 79 (1250)
.++|+++|.+|||||||+|+|++.+ .+.++..+++|++..... + +..+.||||||+.... .....+++......+
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 3789999999999999999999875 556778888888776543 2 4689999999975321 112223333333334
Q ss_pred hh---cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-------hhHHhcCCCCcEecccccCC
Q psy17091 80 II---ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFYELGIGNPHIISALYGN 149 (1250)
Q Consensus 80 ~~---~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-------~~~~~~~~~~~~~iSA~~g~ 149 (1250)
+. ..+++++|+|++.+....+..+.+++...+.|+++++||+|+.+.... .+........++++||+++.
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~ 180 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQ 180 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence 43 457889999988877777767778888888999999999998764332 12222213478999999999
Q ss_pred chhHHHHHHHHhhCC
Q psy17091 150 GIKNFLENILTIELP 164 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~ 164 (1250)
|++++++.+.+.+.+
T Consensus 181 gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 181 GIDELRAAIAKWLAE 195 (196)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999887654
No 251
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.70 E-value=6.4e-16 Score=161.60 Aligned_cols=157 Identities=18% Similarity=0.106 Sum_probs=106.2
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||+|++++...... ..+.++.+.....+..++ ..+.+|||||. +++... ..
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~-~~ 71 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDGKQIKLQIWDTAGQ----------ESFRSI-TR 71 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHH-HH
Confidence 47999999999999999999998654333 223333444344455554 46789999997 333322 23
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
.+++.+|++++|+|+++..+.++.. ++..+.+ .+.|+++|+||+|+.+..... .++.+...... ..+++++||
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~~~~~~~-~~~~~e~Sa 148 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS--YEEGEAFAKEH-GLIFMETSA 148 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHHHHHHHc-CCEEEEEeC
Confidence 5678999999999999765544433 3333333 368999999999997432211 11122222222 368999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q psy17091 336 IKLNNINSFMESINHVYD 353 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (1250)
++|.|++++|..+.+.+.
T Consensus 149 ~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 149 KTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998877653
No 252
>KOG0094|consensus
Probab=99.70 E-value=3.3e-16 Score=155.99 Aligned_cols=161 Identities=20% Similarity=0.203 Sum_probs=121.3
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+..||+++|..+|||||||+++....+ ..+..+.+..|....++.+.|+ .++||||+|+ |+|...-.
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ----------ERFrslip 89 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLIP 89 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-cccccceeeeEEEEEEEEEcCcEEEEEEEecccH----------HHHhhhhh
Confidence 458999999999999999999996543 3335666778888888888876 4567999999 66654433
Q ss_pred HHhhccCcEEEEEecCCCCCCHHH-HHHHHHHHHc----CCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEe
Q psy17091 259 LKSILEANVVILLLDAQQNISAQD-INIANFIYES----GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d-~~~~~~~~~~----~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
.|+|++.++|+|+|.++.-+.++ .++++.+... +.-+++|+||.||.++...... +-+.....++ +.++++
T Consensus 90 -sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~e--Eg~~kAkel~-a~f~et 165 (221)
T KOG0094|consen 90 -SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIE--EGERKAKELN-AEFIET 165 (221)
T ss_pred -hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHH--HHHHHHHHhC-cEEEEe
Confidence 78999999999999999866544 4466666553 2447889999999987544322 2223333333 589999
Q ss_pred ecCCCCChHHHHHHHHHHHhhcc
Q psy17091 334 SAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
||+.|.||.++|..|...+++..
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCcc
Confidence 99999999999999988877654
No 253
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.70 E-value=2.3e-16 Score=164.14 Aligned_cols=150 Identities=19% Similarity=0.123 Sum_probs=104.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|.+|||||||+|++++... ...+++++.+.......+++ ..+.+|||||+.. +......++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~---------~~~~~~~~~ 69 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE---------FSAMRDQYM 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc---------chHHHHHHH
Confidence 3799999999999999999998763 34444555555555556665 4678999999763 223344567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHHhcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|+.+..+... ..+...+.+ .+.|+++|+||+|+...... ..+......+++++||++|.|
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 149 (164)
T smart00173 70 RTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVN 149 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCC
Confidence 89999999999986422211 122223322 36899999999998764332 222222223689999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 150 i~~l~~~l~~~~~ 162 (164)
T smart00173 150 VDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 254
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.70 E-value=5.6e-16 Score=161.68 Aligned_cols=154 Identities=18% Similarity=0.150 Sum_probs=104.0
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+|++++.+... ...|.++.+.....+..++ ..+.+|||||. +.+... ...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~-~~~ 68 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH----------PEYLEV-RNE 68 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCcc----------HHHHHH-HHH
Confidence 589999999999999999999876432 3344444444444555554 46778999998 233322 234
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH--------cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeE
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE--------SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMF 330 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~--------~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~i 330 (1250)
+++.+|++++|+|.++..+.+.. .++..+.+ .+.|+++|+||+|+.++... .+..+.+... . ..++
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~-~~~~ 144 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES---K-GFKY 144 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH---c-CCeE
Confidence 66899999999999986443332 23333332 35899999999999742211 1111222222 2 2689
Q ss_pred EEeecCCCCChHHHHHHHHHHH
Q psy17091 331 NFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 331 v~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
+++||++|.|++++++++.+.+
T Consensus 145 ~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 145 FETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999987654
No 255
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.70 E-value=5.6e-16 Score=161.72 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=105.3
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCc-ceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGL-TRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQ 78 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~-T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 78 (1250)
..||+++|.+|||||||++++++.+. ....+++ ..+.....+..++. .+.+|||||.. ++......
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~ 70 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE---------RFRAVTRS 70 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHH
Confidence 46899999999999999999998753 3333433 33443444556654 67899999964 44455667
Q ss_pred HhhcCCEEEEEEeCCCCCChhhHHHHHHHHh------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccc
Q psy17091 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISAL 146 (1250)
Q Consensus 79 ~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~ 146 (1250)
+++++|++++|+|.+++ .....+..|+.. .+.|+++|+||+|+...... .++. ..+. .++++||+
T Consensus 71 ~~~~~~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 147 (166)
T cd04122 71 YYRGAAGALMVYDITRR--STYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL-LFLECSAK 147 (166)
T ss_pred HhcCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-EEEEEECC
Confidence 78999999999999874 223334444432 35789999999999765433 2222 2333 67999999
Q ss_pred cCCchhHHHHHHHHhh
Q psy17091 147 YGNGIKNFLENILTIE 162 (1250)
Q Consensus 147 ~g~gi~~L~~~i~~~l 162 (1250)
+|.|+++++..+...+
T Consensus 148 ~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 148 TGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988654
No 256
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.70 E-value=3.2e-16 Score=162.63 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=103.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+++|.+|||||||++++++.... ....+....+........++ ..+.+|||||.. ++......+++
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~~ 71 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYE-PQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE---------RFQTMHASYYH 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch---------hhhhhhHHHhC
Confidence 7999999999999999999977532 11122222222233334444 468899999965 44556677889
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHhc--CCCEEEEEeCCCCCCCccc--hhHHhcCCCCcEecccccCCchhHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRKS--GQPIVLVINKSENINSSIS--LDFYELGIGNPHIISALYGNGIKNFLE 156 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~~--~~p~ilv~NK~D~~~~~~~--~~~~~~~~~~~~~iSA~~g~gi~~L~~ 156 (1250)
.+|++|+|+|.+++.+..+ ..+...+++. +.|+++|+||+|+...... .++......+++++||++|.|++++++
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 72 KAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999987544332 2344445443 6899999999998532211 222222223679999999999999999
Q ss_pred HHHHhhC
Q psy17091 157 NILTIEL 163 (1250)
Q Consensus 157 ~i~~~l~ 163 (1250)
.+.+...
T Consensus 152 ~l~~~~~ 158 (161)
T cd04124 152 DAIKLAV 158 (161)
T ss_pred HHHHHHH
Confidence 9987543
No 257
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.70 E-value=2.1e-16 Score=162.47 Aligned_cols=157 Identities=33% Similarity=0.408 Sum_probs=110.1
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|+|||||+|++++.. ...+..+++|.+.....+.+++ ..+.+|||||+.+.. .........+..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~~~~~~~~~ 76 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYR----AIRRLYYRAVES 76 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccch----HHHHHHHhhhhE
Confidence 789999999999999999999987 6777888999998887788888 678889999975442 111111222333
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
.+...|++++|.|+..........+..... .+.|+++|+||+|+.... ..+.....+......+++++||++|.|
T Consensus 77 ~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~sa~~~~g 151 (161)
T TIGR00231 77 SLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGEPIIPLSAETGKN 151 (161)
T ss_pred EEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcch----hhHHHHHHHhhccCCceEEeecCCCCC
Confidence 344455555555554443333333333332 388999999999997643 233344444445567899999999999
Q ss_pred hHHHHHHHH
Q psy17091 341 INSFMESIN 349 (1250)
Q Consensus 341 v~~l~~~i~ 349 (1250)
++++++++.
T Consensus 152 v~~~~~~l~ 160 (161)
T TIGR00231 152 IDSAFKIVE 160 (161)
T ss_pred HHHHHHHhh
Confidence 999999874
No 258
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.70 E-value=3.4e-16 Score=164.75 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=103.4
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
.+||+++|.+|||||||++++..... ....|.+..+. ..+.+++..+.+|||||+.+. .. ....+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~--~~~~~~~~~l~l~D~~G~~~~----------~~-~~~~~ 77 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNV--ETVTYKNISFTVWDVGGQDKI----------RP-LWRHY 77 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccce--EEEEECCEEEEEEECCCChhh----------HH-HHHHH
Confidence 58999999999999999999974433 22333333332 345567788999999998432 11 12345
Q ss_pred hccCcEEEEEecCCCCCCHHH-HHHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 262 ILEANVVILLLDAQQNISAQD-INIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d-~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
++.||++++|+|+++..+..+ ...+..+.. .+.|+++|+||+|+.+.....++.+.+...........++++||+
T Consensus 78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 157 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCAT 157 (175)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCC
Confidence 799999999999987533222 233333322 358999999999996543333333322111011123457789999
Q ss_pred CCCChHHHHHHHHHHH
Q psy17091 337 KLNNINSFMESINHVY 352 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~ 352 (1250)
+|.|+++++++|.+.+
T Consensus 158 ~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 158 SGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999997654
No 259
>PLN03127 Elongation factor Tu; Provisional
Probab=99.70 E-value=3e-16 Score=186.84 Aligned_cols=147 Identities=17% Similarity=0.240 Sum_probs=112.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhC------Ccceec---------cCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLG------ENRVIT---------YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~------~~~~~~---------~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
++.++|+++|++|+|||||+++|++ ...... ...+|+|++.....++.++.++.++||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence 4579999999999999999999973 222111 12489999998888888889999999999943
Q ss_pred cchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcE-EEEEeccccCCccch-HHHHHHHHHHh
Q psy17091 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSL-IVCVNKWDSIIHNQR-KIIKNNIKKKL 322 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~-iiv~NK~Dl~~~~~~-~~~~~~l~~~l 322 (1250)
|. ......+..+|++++|+|+++++..++.+++..+...++|. |+++||||+++.... +...+++.+.+
T Consensus 137 --------f~-~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l 207 (447)
T PLN03127 137 --------YV-KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELL 207 (447)
T ss_pred --------hH-HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 21 22334556799999999999999999999999999999994 788999999864333 23334565655
Q ss_pred ccCC----CCeEEEeecCC
Q psy17091 323 NFLS----FAMFNFISAIK 337 (1250)
Q Consensus 323 ~~~~----~~~iv~iSA~~ 337 (1250)
.+.+ ..|++++||.+
T Consensus 208 ~~~~~~~~~vpiip~Sa~s 226 (447)
T PLN03127 208 SFYKFPGDEIPIIRGSALS 226 (447)
T ss_pred HHhCCCCCcceEEEeccce
Confidence 4433 36899998864
No 260
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.70 E-value=5e-16 Score=161.69 Aligned_cols=148 Identities=18% Similarity=0.196 Sum_probs=105.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|.+|||||||+++++... ....+++++.+.....+..++. .+.+|||||+. ++......++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE---------QFTAMRDLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcc---------cchhHHHHHH
Confidence 589999999999999999999654 3445566666655556667664 56799999975 3334455578
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
+.+|++++|+|.++..+..+ ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETSAKAKI 149 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCC-EEEEeeCCCCC
Confidence 89999999999876432222 223333322 45899999999999764433 1222 2333 78999999999
Q ss_pred chhHHHHHHHHhh
Q psy17091 150 GIKNFLENILTIE 162 (1250)
Q Consensus 150 gi~~L~~~i~~~l 162 (1250)
|++++++++.+.+
T Consensus 150 ~v~~~~~~l~~~l 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 261
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.7e-16 Score=184.46 Aligned_cols=417 Identities=16% Similarity=0.125 Sum_probs=256.0
Q ss_pred EeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCC-CCCCCcHHHHHH----HHHHHHhCCCeEEEeccCccch
Q psy17091 785 MLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS-NLICSKNSRIKI----FAKILMNSGIFVTIRKIRGNDI 859 (1250)
Q Consensus 785 li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~-~~~~p~~e~i~~----f~~iL~~~G~~~~ir~~~g~~i 859 (1250)
+++..-+.++||.....-|= .+-.+|-+ |..|. -|.|.....+++ +++.+.+.|.. .+-.|.....
T Consensus 7 ~~~t~~~~p~da~~~sh~ll-------~rAg~i~~-~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~-Evl~P~L~p~ 77 (500)
T COG0442 7 FLPTLKEKPADASEWSHQLL-------LRAGMIRK-PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQ-EVLFPTLIPA 77 (500)
T ss_pred cchhccCCcchhHHHHHHHH-------HhcCceec-ccCceEEECccHHHHHHHHHHHHHHHHHhcCce-EEechhcCHH
Confidence 34445556677766554331 12334555 44443 355555554454 45555678988 7888988886
Q ss_pred HHhhhhcCCccccccccceeeeccccCCcccccCC---CCcHHHHHHHHHcCCCCCCCeeEEEEeceeecC-CCCCC--C
Q psy17091 860 NAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRP---EGTASVIRSVIENNLIYDGPKRLWYSGPMFRHE-RPQYG--R 933 (1250)
Q Consensus 860 ~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRp---D~T~~iaR~~a~~~~~~~~P~r~yy~g~VfR~e-~~~~g--r 933 (1250)
+.+- -+++++.+.++||++.|+ +++.++||| ++..+++|.+.++++ ++|+++||++++||+| +|..| |
T Consensus 78 eLwk---Es~r~~~f~~El~~v~dr-g~~~l~L~PTsEe~it~~~~~~i~SYk--dLPl~lYQi~~kfRdE~rpr~gllR 151 (500)
T COG0442 78 ELWK---ESGRWEGFGPELFRVKDR-GDRPLALRPTSEEVITDMFRKWIRSYK--DLPLKLYQIQSKFRDEKRPRFGLLR 151 (500)
T ss_pred HHHH---HhChhhhcchhhEEEEcc-CCceeeeCCCcHHHHHHHHHHHhhhhh--hCCcceeeeeeEEeccccCCCCccc
Confidence 6654 678888999999999999 899999999 666678887887655 8999999999999999 66665 9
Q ss_pred CCceEEeeEEEecCCCchhchHHHHH---HHHHHHHCCCCceEEEeCCCcChhhHHH----------------HHHHHHH
Q psy17091 934 YRQFYQIGVEAIGFPGPDIDAELIIM---CSRLWKNLNLKNICLELNSIGNFNERKK----------------YCIDLIN 994 (1250)
Q Consensus 934 ~REf~Q~g~eiig~~~~~adaEvi~l---~~~~l~~lgl~~~~i~i~~~~i~~~~~~----------------~~~~~~~ 994 (1250)
.|||++.+++.|..+...++.++..+ ..++|.++|+ .+..+..+.++..+... .+..+-.
T Consensus 152 ~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i~l-~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~a 230 (500)
T COG0442 152 GREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRLPL-IFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGA 230 (500)
T ss_pred hheeeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCc-eEEeecccCCCCCCccceEEEEEccCCCccEEEEecchHH
Confidence 99999999999999988888766554 5689999998 46666666655443110 0111111
Q ss_pred HHHhcc-CchhhhHHHHHH--hhhcccc---------ccccc---cHHHHHH------------HhhhhhHHHHHHHhHH
Q psy17091 995 YIKKHK-DSKWFCEDIKHS--LYLNSLR---------VLDSK---NLIIREI------------LINAPKLLDYLEKDSL 1047 (1250)
Q Consensus 995 ~l~~~~-~~~~~~~~~~~~--~~~~~l~---------~l~~~---~~~~~~~------------~~~~~~~~~~l~~~~~ 1047 (1250)
.+.+.. ......+..... .....+. ++..- +...... ...+.+ .....
T Consensus 231 N~e~a~~~~~~~~~~~~~~~~v~t~s~~~s~r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~-----h~~~~ 305 (500)
T COG0442 231 NFEKAFIDIKFEDEEEGELEYVHTTSYGISTRIIGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANE-----HYKVV 305 (500)
T ss_pred hHHHhccCCCccccccccceEecccceEEEeeeeeEEEEEecCCCCccCCchhccceEEEEeccccCcch-----hhhhh
Confidence 111111 000000000000 0000000 00000 0000000 000000 00011
Q ss_pred HHHHHHHHHHhhCCceEEEe-CC-CCCCCCCCcceEEEEEECCCCCCcceeecccchHHHH-----hcCCCC-CCeEEEE
Q psy17091 1048 DHFYGIQKILNYNNISYKIN-TK-LVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIK-----KFSNKF-VPASGFA 1119 (1250)
Q Consensus 1048 ~~l~~l~~~l~~~gi~i~~D-~~-~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~-----~fg~~~-~pavGfs 1119 (1250)
+.-..+...+...++.+..| .+ ...|..||..-.- +-+-.+--|-||..-+. +.|... .--+.++
T Consensus 306 ~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~i-------eVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~yg 378 (500)
T COG0442 306 NYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGI-------EVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYG 378 (500)
T ss_pred hhhhhhhhhhhhcceEEeccccCCCCCCceeeeeecc-------ccCEEEEECchhhhhCeeEEEecCCCccceEEEehh
Confidence 11122223333455566677 43 2333323321111 11112333566654322 223321 3344688
Q ss_pred EeHHHHHHHHHHcc------CCCCCCCCceEEEEEcChH---HHHHHHHHHHHHHHcC-CEEEEeeccccccccHHHHHH
Q psy17091 1120 IGIERLIELIKKIN------INHNFSHQCDIYIVHVGKE---AELKAFVLSENLRTLG-LKVILNCVFNNIHESFKSQMK 1189 (1250)
Q Consensus 1120 i~lerl~~~l~~~~------~~~~~~~~~~v~V~~~~~~---~~~~a~~~a~~Lr~~g-i~v~~~~~~~~~~~s~~~~~~ 1189 (1250)
++++|++.++.++. .||...+|+++.|++.+.. ....+.+++.+|..+| ..|++|++ +++.|..+.
T Consensus 379 igvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~~~~~~~~~~~~~~l~~~G~~e~~~ddr----~er~g~k~~ 454 (500)
T COG0442 379 IGVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDDR----DERPGVKFA 454 (500)
T ss_pred hhhhhHHHHHHHHhcccccCccccccCcceeEEEEcCchhHHHHHHhhhHHHHHHhCCchhhhhhhh----ccccCcccc
Confidence 99999777777643 3776789999999999753 2334456788888899 99999877 788999999
Q ss_pred HHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHH
Q psy17091 1190 RANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYF 1240 (1250)
Q Consensus 1190 ~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l 1240 (1250)
.|+.+|+||.+++|++ .+.|.|.+|.+.++ +...++..++++++
T Consensus 455 ~a~liGiP~~~~~g~~-~~~g~~e~k~r~~g------e~~~~~~~~l~~~~ 498 (500)
T COG0442 455 DADLIGIPLRIVVGKR-LAEGEVEVKCRKCG------EKEAVTIEALFARL 498 (500)
T ss_pred CCeEecccceeeeccc-ccCCceeEEecCCC------chhhccHHHHHHHh
Confidence 9999999999999988 67899999999998 77788877777665
No 262
>KOG0078|consensus
Probab=99.69 E-value=5.6e-16 Score=158.32 Aligned_cols=159 Identities=24% Similarity=0.165 Sum_probs=121.9
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+.-+||.++|.+|||||+++-++... .+..+.....-.|....++..++.+ +++|||+|+ |+|....
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~-~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQ----------erf~ti~ 78 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDD-SFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQ----------ERFRTIT 78 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhc-cCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccc----------hhHHHHH
Confidence 34699999999999999999998864 3444455555678888888888875 567999999 5555443
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccc-hHHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQ-RKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
-+|++.|+++++|+|.+...+..+. .+++.+.+ .+.|.++|+||+|+..+.. ..+.-+.+...+ +.++++
T Consensus 79 -~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~----G~~F~E 153 (207)
T KOG0078|consen 79 -TAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREY----GIKFFE 153 (207)
T ss_pred -HHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHh----CCeEEE
Confidence 3788999999999999997665554 35555555 4789999999999976332 234444455444 489999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+|||+|.||++.|-.+.+.+..
T Consensus 154 tSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 154 TSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred ccccCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998777654
No 263
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.69 E-value=2.3e-16 Score=165.16 Aligned_cols=150 Identities=18% Similarity=0.217 Sum_probs=105.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
||+++|.+|||||||+|+|++... ....| |.......++..+..+.+|||||.. ++...+..++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~i~l~Dt~G~~---------~~~~~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQPIP--TIGFNVETVEYKNLKFTIWDVGGKH---------KLRPLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCcCC--cCceeEEEEEECCEEEEEEECCCCh---------hcchHHHHHhccC
Confidence 589999999999999999998742 23333 4444445567788899999999975 3344566678899
Q ss_pred CEEEEEEeCCCCC--ChhhHHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHhc---CCC---CcEecccccCC
Q psy17091 84 DIIIFIVDGRQGL--VEQDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYEL---GIG---NPHIISALYGN 149 (1250)
Q Consensus 84 d~il~v~D~~~~~--~~~~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~~---~~~---~~~~iSA~~g~ 149 (1250)
|++++|+|+++.. ......+..+++. .+.|+++|+||+|+...... .++... +.. .++++||++|.
T Consensus 68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 9999999998742 2222233334332 24799999999998653222 222221 111 35689999999
Q ss_pred chhHHHHHHHHhhCCcc
Q psy17091 150 GIKNFLENILTIELPYK 166 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~~~ 166 (1250)
|++++++++.+.+.+.+
T Consensus 148 gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 148 GLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CHHHHHHHHHHHHhhcc
Confidence 99999999998776553
No 264
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.69 E-value=4.8e-16 Score=162.72 Aligned_cols=158 Identities=22% Similarity=0.175 Sum_probs=105.5
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
||+++|.+|||||||++++++... .....|.+..+.....+..++ ..+.+|||||+ ++|.... ..+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~-~~~ 69 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ----------ERFKCIA-STY 69 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh----------HHHHhhH-HHH
Confidence 799999999999999999998643 222334444455445566665 36788999998 3343332 356
Q ss_pred hccCcEEEEEecCCCCCCHHH-HHHHHHHHHc----CCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 262 ILEANVVILLLDAQQNISAQD-INIANFIYES----GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d-~~~~~~~~~~----~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
++.+|++++|+|+++..+... ..++..+.+. ..|+++|+||+|+.+........++........ ..+++++||+
T Consensus 70 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~ 148 (170)
T cd04108 70 YRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM-QAEYWSVSAL 148 (170)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHc-CCeEEEEECC
Confidence 789999999999987533332 2344444432 256899999999965433211111122221112 2578999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q psy17091 337 KLNNINSFMESINHVYDS 354 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~ 354 (1250)
+|.|++++|+.+...+.+
T Consensus 149 ~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 149 SGENVREFFFRVAALTFE 166 (170)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877643
No 265
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.69 E-value=6.6e-16 Score=161.36 Aligned_cols=150 Identities=19% Similarity=0.110 Sum_probs=106.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
..||+++|.+|||||||+|++++.+.. ....|+++.+.....+.+++. .+.+|||||.. .+......+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~---------~~~~~~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFN-PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE---------RFRTITTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCC-cccccCccceEEEEEEEECCEEEEEEEEeCCchH---------HHHHHHHHH
Confidence 468999999999999999999987642 233455555555556666664 78899999964 333445567
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
++++|++++|+|.+++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +.+++||++|.
T Consensus 73 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 151 (167)
T cd01867 73 YRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSAKANI 151 (167)
T ss_pred hCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 889999999999987433222 123332332 35799999999999754332 1222 2333 67999999999
Q ss_pred chhHHHHHHHHhh
Q psy17091 150 GIKNFLENILTIE 162 (1250)
Q Consensus 150 gi~~L~~~i~~~l 162 (1250)
|++++++.+.+.+
T Consensus 152 ~v~~~~~~i~~~~ 164 (167)
T cd01867 152 NVEEAFFTLAKDI 164 (167)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 266
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.69 E-value=9.6e-16 Score=159.94 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=103.8
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcce-eeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTR-DSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~-~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
+||+++|.+|||||||++++.+... ....+.|+. +.....+..++. .+.+|||||+ +.+... ..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~-~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ----------ERFRAV-TR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHH-HH
Confidence 7899999999999999999997643 223444432 333334455554 5688999998 333322 23
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|+++..+.+... ++..+.. .+.|+++|+||+|+.+.... .+..+.+.+. . ..+++++|
T Consensus 70 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~---~-~~~~~e~S 145 (166)
T cd04122 70 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADE---N-GLLFLECS 145 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHH---c-CCEEEEEE
Confidence 5678999999999999875444332 3333322 35799999999999754322 1222222222 2 36899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHVY 352 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (1250)
|++|.|++++|..+...+
T Consensus 146 a~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 146 AKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998887554
No 267
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.69 E-value=2.7e-16 Score=197.65 Aligned_cols=155 Identities=25% Similarity=0.338 Sum_probs=120.3
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchh----hHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK----KGIMHEMTKQTK 77 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~----~~~~~~~~~~~~ 77 (1250)
..+|+++|+||||||||+|+|++.+. .++++||+|++...+.+.+++.++.+|||||+.+... ....+++....
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~- 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY- 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH-
Confidence 46899999999999999999999875 5899999999999999999999999999999875421 12233333222
Q ss_pred HHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHH--hcCCCCcEecccccCCchh
Q psy17091 78 QAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY--ELGIGNPHIISALYGNGIK 152 (1250)
Q Consensus 78 ~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~--~~~~~~~~~iSA~~g~gi~ 152 (1250)
.....+|++++|+|+++. .....+...+.+.++|+++|+||+|+.+.... .+.+ .+|. +++++||++|+|++
T Consensus 81 l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~-pVvpiSA~~g~GId 157 (772)
T PRK09554 81 ILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGC-PVIPLVSTRGRGIE 157 (772)
T ss_pred HhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCC-CEEEEEeecCCCHH
Confidence 224589999999999873 33344556677789999999999998754433 2222 3555 78999999999999
Q ss_pred HHHHHHHHh
Q psy17091 153 NFLENILTI 161 (1250)
Q Consensus 153 ~L~~~i~~~ 161 (1250)
++.+.+.+.
T Consensus 158 eL~~~I~~~ 166 (772)
T PRK09554 158 ALKLAIDRH 166 (772)
T ss_pred HHHHHHHHh
Confidence 999998754
No 268
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.69 E-value=5.5e-16 Score=168.87 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=108.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC---eeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN---KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
+||+++|.+|||||||+|+|.+... .....|.++.|.....+.+++ ..+.+|||||+.. +... ..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~----------~~~l-~~ 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI----------GGKM-LD 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH----------HHHH-HH
Confidence 5899999999999999999997653 233445555676666666643 4778999999832 2211 22
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH------cCCcEEEEEeccccCCccc-hHHHHHHHHHHhccCCCCeEE
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE------SGRSLIVCVNKWDSIIHNQ-RKIIKNNIKKKLNFLSFAMFN 331 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~------~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~iv 331 (1250)
.+++.+|++++|+|+++..+.++.. +...+.+ .+.|+++|+||+|+.+... ..+..+.+.+.. ..+++
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~----~~~~~ 144 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQAN----GMESC 144 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHc----CCEEE
Confidence 4578999999999999875554443 3344443 2357999999999974322 122223333322 25889
Q ss_pred EeecCCCCChHHHHHHHHHHHhh
Q psy17091 332 FISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 332 ~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
++||++|.|++++|+++.+.+..
T Consensus 145 ~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 145 LVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 269
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.69 E-value=3.8e-16 Score=162.82 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=100.9
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc--CeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+|++++.... ....| |+.......+..+ ...+.+|||||+.+.. ... ..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~-~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIP-TIEDTYRQVISCSKNICTLQITDTTGSHQFP----------AMQ-RL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCcCC-cchheEEEEEEECCEEEEEEEEECCCCCcch----------HHH-HH
Confidence 68999999999999999999976532 21222 2222222223333 3467899999995432 111 24
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH------cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE------SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~------~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
+++.+|++++|+|.++..+.... .++..+.+ .+.|+++|+||+|+.+.... .+....+.... ..++++
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~e 144 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEW----NCAFME 144 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHh----CCcEEE
Confidence 56789999999999987665443 34444443 46899999999999653222 11112222211 357999
Q ss_pred eecCCCCChHHHHHHHHHH
Q psy17091 333 ISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~ 351 (1250)
+||++|.|++++|++|...
T Consensus 145 ~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 145 TSAKTNHNVQELFQELLNL 163 (165)
T ss_pred eecCCCCCHHHHHHHHHhc
Confidence 9999999999999998643
No 270
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.69 E-value=1.3e-16 Score=172.60 Aligned_cols=141 Identities=32% Similarity=0.437 Sum_probs=108.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccc------------------------------cCCCcceeeeEEEEEECCEEEE
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVA------------------------------NYPGLTRDRHYGEGYIGKKSFI 53 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~------------------------------~~~~~T~~~~~~~~~~~~~~~~ 53 (1250)
+|+++|++|+|||||+|+|+....+++. ..+|+|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999876544331 1278999999999999999999
Q ss_pred EEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCccc---
Q psy17091 54 IIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS--- 129 (1250)
Q Consensus 54 liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~-p~ilv~NK~D~~~~~~~--- 129 (1250)
||||||+. ++...+..++..+|++|+|+|++.+....+..+..++...+. ++++|+||+|+......
T Consensus 81 liDTpG~~---------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~ 151 (208)
T cd04166 81 IADTPGHE---------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFE 151 (208)
T ss_pred EEECCcHH---------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHH
Confidence 99999964 344455667889999999999998877777666677776665 47789999998753221
Q ss_pred ---hh---HH-hcCCC--CcEecccccCCchhH
Q psy17091 130 ---LD---FY-ELGIG--NPHIISALYGNGIKN 153 (1250)
Q Consensus 130 ---~~---~~-~~~~~--~~~~iSA~~g~gi~~ 153 (1250)
.+ +. .+++. +++++||++|.|+.+
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 11 11 34432 479999999999875
No 271
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.69 E-value=4.6e-16 Score=169.48 Aligned_cols=150 Identities=18% Similarity=0.203 Sum_probs=108.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC---EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK---KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
||+++|.+|||||||+|+|++.... ....|+++.|.....+.+.+ ..+.||||||.. .+......++
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~-~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~---------~~~~l~~~~~ 71 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG-KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS---------IGGKMLDKYI 71 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH---------HHHHHHHHHh
Confidence 7999999999999999999987642 34456666677666666643 588999999964 3344455668
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHhc------CCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEeccccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRKS------GQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~~------~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~ 147 (1250)
+++|++|+|+|.++..+... ..|.+.+.+. +.|+++|+||+|+.+.... ..+. ..+. ..+++||++
T Consensus 72 ~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~~iSAkt 150 (215)
T cd04109 72 YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESCLVSAKT 150 (215)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEECCC
Confidence 89999999999987433222 2244444432 3478999999999754433 2222 2343 678999999
Q ss_pred CCchhHHHHHHHHhhCC
Q psy17091 148 GNGIKNFLENILTIELP 164 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~ 164 (1250)
|.|++++++.+.+.+..
T Consensus 151 g~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 151 GDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987654
No 272
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.69 E-value=3.2e-16 Score=162.34 Aligned_cols=152 Identities=17% Similarity=0.171 Sum_probs=99.1
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc-CeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
+|+++|.+|||||||+|++.+.+.....+..+.+. ..+..+ +..+.+|||||+... ... ...++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~----------~~~-~~~~~ 65 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV----EMLQLEKHLSLTVWDVGGQEKM----------RTV-WKCYL 65 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce----EEEEeCCceEEEEEECCCCHhH----------HHH-HHHHh
Confidence 58999999999999999999876543333333222 223332 468899999998422 111 22457
Q ss_pred ccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHH-HHhccCCCCeEEEeecC
Q psy17091 263 LEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIK-KKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~-~~l~~~~~~~iv~iSA~ 336 (1250)
+.+|++++|+|+++..+.... ..+..+.. .+.|+++|+||+|+.......+....+. ..+......+++++||+
T Consensus 66 ~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~ 145 (160)
T cd04156 66 ENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAV 145 (160)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccc
Confidence 889999999999886432222 22222222 4799999999999964333333332221 11111123479999999
Q ss_pred CCCChHHHHHHHHH
Q psy17091 337 KLNNINSFMESINH 350 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~ 350 (1250)
+|.|+++++++|.+
T Consensus 146 ~~~gv~~~~~~i~~ 159 (160)
T cd04156 146 TGEGLAEAFRKLAS 159 (160)
T ss_pred cCCChHHHHHHHhc
Confidence 99999999998853
No 273
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.69 E-value=2.6e-16 Score=163.23 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=102.9
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCccee-ccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVI-TYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
+||+++|.+|||||||+|+|++..... ..+.++.+... ..+.+++ ..+.+|||||+.+ +... ..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~----------~~~~-~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKV--KTLTVDGKKVKLAIWDTAGQER----------FRTL-TS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEE--EEEEECCEEEEEEEEECCCchh----------hhhh-hH
Confidence 589999999999999999999866433 23344443332 3334444 4678999999833 2211 23
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
..++.+|++++|+|+++..+.++.. ++..+.+ .+.|+++|+||+|+.......+....+.... ..+++++|
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~S 143 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKH----NMLFIETS 143 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHc----CCEEEEEe
Confidence 4568899999999998865544433 3333332 4789999999999974332222222222222 36899999
Q ss_pred cCCCCChHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHV 351 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~ 351 (1250)
|++|.|++++++.+.+.
T Consensus 144 a~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 144 AKTRDGVQQAFEELVEK 160 (161)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999988653
No 274
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.69 E-value=5.3e-16 Score=161.86 Aligned_cols=148 Identities=14% Similarity=0.166 Sum_probs=105.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+++|.+|||||||+|+|++++.. ....|.++.+.....+.+++ ..+.+|||||.. .+......++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP---------EYLEVRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCeEEEEEEEECCccH---------HHHHHHHHHhc
Confidence 7999999999999999999988743 34455555565555566655 478899999974 33344556678
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh--------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccc
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK--------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISAL 146 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~--------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~ 146 (1250)
.+|++|+|+|.+++.+... ..+...+.+ .+.|+++|+||+|+.+.... ..+. ..+ .+++++||+
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 150 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG-FKYFETSAC 150 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC-CeEEEEECC
Confidence 9999999999987422211 123332222 24789999999998743222 1222 334 368999999
Q ss_pred cCCchhHHHHHHHHhh
Q psy17091 147 YGNGIKNFLENILTIE 162 (1250)
Q Consensus 147 ~g~gi~~L~~~i~~~l 162 (1250)
+|.|++++++.+.+.+
T Consensus 151 ~~~gi~~l~~~l~~~l 166 (168)
T cd04119 151 TGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 275
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.69 E-value=4.8e-16 Score=164.58 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=102.5
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
.+||+++|.+|||||||++++...+... ..|.+. .....+...+..+.+|||||+.+ +.. ....+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~T~~--~~~~~~~~~~~~~~l~D~~G~~~----------~~~-~~~~~ 81 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT--TIPTIG--FNVETVEYKNLKFTMWDVGGQDK----------LRP-LWRHY 81 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--cCCccc--cceEEEEECCEEEEEEECCCCHh----------HHH-HHHHH
Confidence 5899999999999999999997544322 222222 22234556778999999999832 221 22356
Q ss_pred hccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 262 ILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
++.+|++|+|+|+++.-+..+. ..+..+.. ..+|+++|+||.|+.+.....+..+.+..........+++++||+
T Consensus 82 ~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~ 161 (182)
T PTZ00133 82 YQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCAT 161 (182)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCC
Confidence 7899999999999875332221 22232222 358999999999986543333332222211000112357789999
Q ss_pred CCCChHHHHHHHHHHHh
Q psy17091 337 KLNNINSFMESINHVYD 353 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~ 353 (1250)
+|.|++++++++.+.+.
T Consensus 162 tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 162 TAQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999977654
No 276
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.69 E-value=1e-15 Score=159.19 Aligned_cols=155 Identities=19% Similarity=0.150 Sum_probs=108.1
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||++++++.+. .....+.++.+.....+.+++ ..+.+|||||.. .+.. ....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~-~~~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE----------RFRS-ITSS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHH-HHHH
Confidence 5899999999999999999998754 223445555555555666666 467899999972 2322 2234
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccc-hHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQ-RKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
.++.+|++++|+|+++..+.+... ++..+.. .++|+++|+||+|+.+... ..+..+.+.+.. ..+++++||
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~e~Sa 144 (164)
T smart00175 69 YYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH----GLPFFETSA 144 (164)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHc----CCeEEEEeC
Confidence 568899999999999865544432 3333333 4689999999999875322 122222232222 257999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q psy17091 336 IKLNNINSFMESINHVYD 353 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (1250)
++|.|++++++.+.+.+.
T Consensus 145 ~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 145 KTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999987653
No 277
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.69 E-value=2.9e-16 Score=164.04 Aligned_cols=145 Identities=16% Similarity=0.199 Sum_probs=101.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+++|..... ....|+++.+. ..+...+..+.+|||||.. ++......++.+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~--~~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~ 76 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQS--VTTIPTVGFNV--ETVTYKNVKFNVWDVGGQD---------KIRPLWRHYYTG 76 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCC--ccccCCcccce--EEEEECCEEEEEEECCCCH---------HHHHHHHHHhcc
Confidence 4899999999999999999987653 23345444443 2445677899999999975 344455667899
Q ss_pred CCEEEEEEeCCCCCC--hhhHHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHhcC-----CCCcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYELG-----IGNPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~~~-----~~~~~~iSA~~g~ 149 (1250)
+|+++||+|+++..+ .....+.+.+.. .+.|+++|+||+|+.+.... .+..... ...++++||++|.
T Consensus 77 a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~ 156 (168)
T cd04149 77 TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156 (168)
T ss_pred CCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence 999999999987422 222233344432 35899999999998653221 2222111 1146899999999
Q ss_pred chhHHHHHHHH
Q psy17091 150 GIKNFLENILT 160 (1250)
Q Consensus 150 gi~~L~~~i~~ 160 (1250)
|+++++++|.+
T Consensus 157 gv~~~~~~l~~ 167 (168)
T cd04149 157 GLYEGLTWLSS 167 (168)
T ss_pred ChHHHHHHHhc
Confidence 99999998864
No 278
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.69 E-value=2.3e-16 Score=159.96 Aligned_cols=140 Identities=23% Similarity=0.249 Sum_probs=94.8
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
||+++|.+|||||||+|+|.+.... .+.| . .+.+.+ .+|||||.... ..+.+.. ....++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~t-~-----~~~~~~---~~iDt~G~~~~-----~~~~~~~--~~~~~~ 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKKT-Q-----AVEYND---GAIDTPGEYVE-----NRRLYSA--LIVTAA 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cccc-e-----eEEEcC---eeecCchhhhh-----hHHHHHH--HHHHhh
Confidence 7999999999999999999987542 1222 1 223333 68999998321 1122322 223579
Q ss_pred cCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHH
Q psy17091 264 EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINS 343 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~ 343 (1250)
.+|++++|+|++++.+..+..+... .+.|+++|+||+|+.+.....+ ...+.+......+++++||++|.|+++
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIE---RAKELLETAGAEPIFEISSVDEQGLEA 135 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHH---HHHHHHHHcCCCcEEEEecCCCCCHHH
Confidence 9999999999999877665444332 3469999999999975322212 222222222345899999999999999
Q ss_pred HHHHHH
Q psy17091 344 FMESIN 349 (1250)
Q Consensus 344 l~~~i~ 349 (1250)
+++++.
T Consensus 136 l~~~l~ 141 (142)
T TIGR02528 136 LVDYLN 141 (142)
T ss_pred HHHHHh
Confidence 998873
No 279
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.69 E-value=5.8e-16 Score=166.06 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=127.8
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccC-CCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
++|+++|+||||||||+|+|+|.+.+.++. .+++|+++......+++.++.+|||||+.+.....+.+..........+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999988766543 5689999988888899999999999999876533333333333334445
Q ss_pred hccCcEEEEEecCCCCCCHHHHHHHHHHHHc-C----CcEEEEEeccccCCccchHHHH----HHHHHHhccCCCCeEEE
Q psy17091 262 ILEANVVILLLDAQQNISAQDINIANFIYES-G----RSLIVCVNKWDSIIHNQRKIIK----NNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~~~~~~~~~-~----~p~iiv~NK~Dl~~~~~~~~~~----~~l~~~l~~~~~~~iv~ 332 (1250)
.+++|++++|+|+.+ ++..|..+++.+.+. | .++++|+|++|.......+++. ..++..+...+. .++.
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~-r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG-RYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC-eEEE
Confidence 578999999999988 899999999988773 3 7899999999988655443332 233333333322 2222
Q ss_pred e-----ecCCCCChHHHHHHHHHHHhhcc
Q psy17091 333 I-----SAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 333 i-----SA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
. |+..+.++++|++.|.+...+..
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 2 36678899999999998887643
No 280
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.69 E-value=7.6e-16 Score=161.06 Aligned_cols=149 Identities=20% Similarity=0.140 Sum_probs=107.8
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
..+|+++|.+|||||||+|++++.+.. ....+.++.+.....+.+++ ..+.+|||||.. ++......+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 73 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE---------SFRSITRSY 73 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHH
Confidence 358999999999999999999987643 22234445555555556665 478999999954 445556677
Q ss_pred hhcCCEEEEEEeCCCCCChhhHHHHHHHH---h---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEeccccc
Q psy17091 80 IIESDIIIFIVDGRQGLVEQDKLITNFLR---K---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~~~~~~~l~---~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~ 147 (1250)
++.+|++++|+|.+++ .....+..|+. . .+.|+++|+||+|+.+.... ..+. ..+. .++++||++
T Consensus 74 ~~~~d~il~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 150 (168)
T cd01866 74 YRGAAGALLVYDITRR--ETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL-IFMETSAKT 150 (168)
T ss_pred hccCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 8899999999999863 22333444443 2 36799999999998754332 2222 3344 689999999
Q ss_pred CCchhHHHHHHHHhhC
Q psy17091 148 GNGIKNFLENILTIEL 163 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~ 163 (1250)
+.|+++++..+.+.+.
T Consensus 151 ~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 151 ASNVEEAFINTAKEIY 166 (168)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999887653
No 281
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.69 E-value=2.2e-16 Score=168.22 Aligned_cols=152 Identities=28% Similarity=0.440 Sum_probs=122.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcc-----------------cccCCCcceeeeEEEEE--ECCEEEEEEecCCCCcc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL-----------------VANYPGLTRDRHYGEGY--IGKKSFIIIDTGGFEPE 63 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~-----------------v~~~~~~T~~~~~~~~~--~~~~~~~liDTpG~~~~ 63 (1250)
.+|+++|+.++|||||+++|++..... .....+.|.+.....+. .++..++++||||+.
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~-- 81 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE-- 81 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH--
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc--
Confidence 479999999999999999998654211 12335778888888888 899999999999964
Q ss_pred hhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---h----hHH-hc
Q psy17091 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---L----DFY-EL 135 (1250)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~----~~~-~~ 135 (1250)
.+...+..++..+|++|+|+|+.++......++..+++..+.|+++|+||+|+...+.. . .+. ..
T Consensus 82 -------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~ 154 (188)
T PF00009_consen 82 -------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEY 154 (188)
T ss_dssp -------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHT
T ss_pred -------ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhcccc
Confidence 56677788899999999999999999999999999999999999999999999832211 1 221 22
Q ss_pred CCC-----CcEecccccCCchhHHHHHHHHhhC
Q psy17091 136 GIG-----NPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 136 ~~~-----~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
+.. +++++||++|.|+++|++.+.+.+|
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 322 5899999999999999999998776
No 282
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=5.6e-16 Score=167.08 Aligned_cols=153 Identities=16% Similarity=0.074 Sum_probs=108.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC-C--EEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-K--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
.+|+++|.+|||||||+|++++.... ....|+++.+.....+.++ + ..+.+|||||.. ++......+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~ 70 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE---------RFGGMTRVY 70 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch---------hhhhhHHHH
Confidence 37999999999999999999987532 2334555556555556665 3 478899999974 344556677
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEeccc
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK-------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISA 145 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~-------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA 145 (1250)
++++|++++|+|.+++.+-.. ..|...+.. .+.|+++|+||+|+.+.... .++. ..++..++++||
T Consensus 71 ~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 150 (201)
T cd04107 71 YRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSA 150 (201)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeC
Confidence 899999999999987433222 122222221 45799999999999742222 2333 334457899999
Q ss_pred ccCCchhHHHHHHHHhhCCc
Q psy17091 146 LYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 146 ~~g~gi~~L~~~i~~~l~~~ 165 (1250)
++|.|++++++.+.+.+...
T Consensus 151 k~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 151 KEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999877543
No 283
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.69 E-value=3.1e-16 Score=164.43 Aligned_cols=157 Identities=19% Similarity=0.170 Sum_probs=108.7
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.++||||||+.++..... .. .+..|..+.....+..++. ++.+|||+|+.+.. ..+ ..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~-~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~----------~~~-~~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PT-DYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN----------RLR-PL 68 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CC-CCCCcceeeeEEEEEECCEEEEEEEEECCCCcccc----------ccc-hh
Confidence 6899999999999999999997653 22 3333444444444555554 56789999995442 222 24
Q ss_pred hhccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCccc--------hHHHHHHHHHHhccCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQ--------RKIIKNNIKKKLNFLSFA 328 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~~--------~~~~~~~l~~~l~~~~~~ 328 (1250)
+++.||++++|+|.++..+.+.. .++..+.. .+.|+++|+||+|+.+... .....++..+.....+..
T Consensus 69 ~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 148 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAA 148 (176)
T ss_pred hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCC
Confidence 67899999999999998777664 35555543 3689999999999964321 011122222332223334
Q ss_pred eEEEeecCCCCChHHHHHHHHHHH
Q psy17091 329 MFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 329 ~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
+++++||++|.||+++|+.+.+..
T Consensus 149 ~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 149 AYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEEECCCCcccCHHHHHHHHHHHH
Confidence 799999999999999999998754
No 284
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.69 E-value=4.4e-16 Score=192.04 Aligned_cols=157 Identities=20% Similarity=0.257 Sum_probs=125.1
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcc--eeccCCCCcceeeEEEEEEE-cCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENR--VITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~--~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
-|+++|++|+|||||+++|+|.+. .......|+|.+.....+.. ++..+.+|||||+ +.|. ..+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh----------e~fi-~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH----------EKFL-SNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH----------HHHH-HHHHH
Confidence 589999999999999999998542 22334579999887666655 4678899999999 4443 33456
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEeccccCCccchHHHHHHHHHHhccCC--CCeEEEeecCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQRKIIKNNIKKKLNFLS--FAMFNFISAIK 337 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~--~~~iv~iSA~~ 337 (1250)
.+..+|++++|+|+++++.+++.+.+..+...++| +++|+||+|++++.......+++.+.+.... ..|++++||++
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 77899999999999999999999999988888888 4799999999876555556666766654333 47899999999
Q ss_pred CCChHHHHHHHHHH
Q psy17091 338 LNNINSFMESINHV 351 (1250)
Q Consensus 338 g~gv~~l~~~i~~~ 351 (1250)
|.|+++|++.|.+.
T Consensus 151 G~gI~~L~~~L~~~ 164 (614)
T PRK10512 151 GRGIDALREHLLQL 164 (614)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999888654
No 285
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.69 E-value=6.8e-16 Score=163.34 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=105.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC------------CEEEEEEecCCCCcchhhHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG------------KKSFIIIDTGGFEPEVKKGIMH 70 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~~~ 70 (1250)
.||+++|.+|||||||+|++++.... ....++++.+.....+.+. ...+.||||||+.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------- 74 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFN-PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------- 74 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH---------
Confidence 58999999999999999999987532 2334444445544444443 2578999999954
Q ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHH---h----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCC
Q psy17091 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLR---K----SGQPIVLVINKSENINSSIS-----LDFY-ELGI 137 (1250)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~---~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~ 137 (1250)
++......+++++|++++|+|.++.. ....+..|+. . .+.|+++|+||+|+.+.... .++. ..+.
T Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 152 (180)
T cd04127 75 RFRSLTTAFFRDAMGFLLIFDLTNEQ--SFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGI 152 (180)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCC
Confidence 45556677789999999999998632 2233333333 2 25789999999999754332 2222 3343
Q ss_pred CCcEecccccCCchhHHHHHHHHhh
Q psy17091 138 GNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 138 ~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
+++++||++|.|++++++.+.+.+
T Consensus 153 -~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 153 -PYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998754
No 286
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.69 E-value=4.3e-16 Score=166.39 Aligned_cols=148 Identities=20% Similarity=0.203 Sum_probs=105.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+++|.+|||||||+|+|+.... ...+++++.+........++. .+.+|||||.. ++......+++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE---------EYTALRDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCch---------hhHHHHHHHHH
Confidence 589999999999999999997653 334455554444445556665 58899999964 33344556788
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccC
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g 148 (1250)
.+|++|+|+|.++..+... ..+.+.+.. .+.|+++|+||+|+...... .++. ..+. .++++||++|
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SAk~~ 148 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEASAKTN 148 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 9999999999987433222 223333332 35799999999999654433 2222 2343 6899999999
Q ss_pred CchhHHHHHHHHhhC
Q psy17091 149 NGIKNFLENILTIEL 163 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~ 163 (1250)
.|++++++.+.+.+.
T Consensus 149 ~~v~~l~~~l~~~l~ 163 (190)
T cd04144 149 VNVERAFYTLVRALR 163 (190)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998664
No 287
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.69 E-value=3.5e-16 Score=163.71 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=103.4
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
||+++|.+|||||||++++.+... ... .+|.......+.+++..+.+|||||+.+.. .....+++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~--~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~-----------~~~~~~~~ 65 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQP--IPTIGFNVETVEYKNLKFTIWDVGGKHKLR-----------PLWKHYYL 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCc--CCcCceeEEEEEECCEEEEEEECCCChhcc-----------hHHHHHhc
Confidence 589999999999999999998642 222 233333334567778899999999985432 11234568
Q ss_pred cCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhcc--CCCCeEEEeecC
Q psy17091 264 EANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF--LSFAMFNFISAI 336 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~--~~~~~iv~iSA~ 336 (1250)
.+|++++|+|+++..+..+. ..+..+.. .+.|+++|+||+|+.+....++..+.+ ..... ....+++++||+
T Consensus 66 ~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~ 144 (169)
T cd04158 66 NTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL-SLHKLCCGRSWYIQGCDAR 144 (169)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh-CCccccCCCcEEEEeCcCC
Confidence 89999999999886333222 22333322 248999999999996543333322222 11111 112368899999
Q ss_pred CCCChHHHHHHHHHHHhh
Q psy17091 337 KLNNINSFMESINHVYDS 354 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~ 354 (1250)
+|.|++++|+++.+.+..
T Consensus 145 ~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 145 SGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999766543
No 288
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.69 E-value=5.2e-16 Score=168.63 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=115.1
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceecc-------------CCCCcceeeE------------------------EEEEE
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITY-------------DTPGTTRDSI------------------------KSLFE 226 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~-------------~~~gtT~~~~------------------------~~~~~ 226 (1250)
||+++|..++|||||++++......... -..|.|.... ...++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999842221100 0122222110 12344
Q ss_pred EcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh--ccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccc
Q psy17091 227 YNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI--LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304 (1250)
Q Consensus 227 ~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~--~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~D 304 (1250)
..++.+.++||||+.+ |. ..+...+ ..+|++++|+|+..+.+.++..++.++.+.++|+++|+||+|
T Consensus 81 ~~~~~i~liDtpG~~~----------~~-~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D 149 (224)
T cd04165 81 KSSKLVTFIDLAGHER----------YL-KTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKID 149 (224)
T ss_pred eCCcEEEEEECCCcHH----------HH-HHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 5678899999999943 32 2233344 368999999999999999999999999999999999999999
Q ss_pred cCCccchHHHHHHHHHHhc-------------------------cCCCCeEEEeecCCCCChHHHHHHHHH
Q psy17091 305 SIIHNQRKIIKNNIKKKLN-------------------------FLSFAMFNFISAIKLNNINSFMESINH 350 (1250)
Q Consensus 305 l~~~~~~~~~~~~l~~~l~-------------------------~~~~~~iv~iSA~~g~gv~~l~~~i~~ 350 (1250)
+.++.......+++.+.+. ....+|++.+||.+|.|+++|.+.|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 9876666666677766654 222459999999999999999987743
No 289
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.69 E-value=5e-16 Score=163.92 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=109.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||++++..... ...+.+|..+.....+..++. .+.+|||+|. ++|...+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~----------e~~~~~~~ 71 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGS----------PYYDNVRP 71 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCc----------hhhHhhhh
Confidence 468999999999999999999997543 223444444444445566665 5778999998 34433333
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCc----------cchHHHHHHHHHHhcc
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIH----------NQRKIIKNNIKKKLNF 324 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~----------~~~~~~~~~l~~~l~~ 324 (1250)
.+++.+|++++|+|.++..+.+.. .+...+.+ .+.|+++|+||+|+.+. .......++..+....
T Consensus 72 -~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~ 150 (182)
T cd04172 72 -LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ 150 (182)
T ss_pred -hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHH
Confidence 467899999999999998666653 34445544 36899999999998541 0111112233333333
Q ss_pred CCCCeEEEeecCCCCC-hHHHHHHHHHH
Q psy17091 325 LSFAMFNFISAIKLNN-INSFMESINHV 351 (1250)
Q Consensus 325 ~~~~~iv~iSA~~g~g-v~~l~~~i~~~ 351 (1250)
.+..+++++||++|.| |+++|+.+.+.
T Consensus 151 ~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 151 IGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred cCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 3345899999999998 99999988764
No 290
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.69 E-value=8.6e-16 Score=159.73 Aligned_cols=147 Identities=22% Similarity=0.203 Sum_probs=108.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|++|||||||+|++++.+.. ....+.++.+.....+.+++ ..+.+|||||.. .+......+++
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE---------RFRSITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHHhC
Confidence 7999999999999999999987643 34445556565556667766 478899999954 34455666788
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHh------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
.+|++++|+|.++..+. ..+..|+.. .+.|+++|+||+|+...... .++. ..++ +++++||++|.
T Consensus 72 ~~d~~ilv~d~~~~~s~--~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (164)
T smart00175 72 GAVGALLVYDITNRESF--ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL-PFFETSAKTNT 148 (164)
T ss_pred CCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999999874332 233334332 46899999999998764322 2232 3454 68999999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++.+.+.+.
T Consensus 149 ~i~~l~~~i~~~~~ 162 (164)
T smart00175 149 NVEEAFEELAREIL 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988664
No 291
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.69 E-value=4.8e-16 Score=161.60 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=105.2
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+++++..... ..+.+|+.+.....+..++. .+.+|||||+.+.. ... ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~-~~ 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA----------SMR-DL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCccccc----------chH-HH
Confidence 78999999999999999999976442 23344544555555666665 46679999985443 111 23
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEEee
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
+++.+|++++|+|.++..+.++. .++..+.+ .++|+++|+||+|+.+..... .....+.+.. ..+++++|
T Consensus 69 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S 144 (163)
T cd04176 69 YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEW----GCPFMETS 144 (163)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHh----CCEEEEec
Confidence 56789999999999986554443 23344443 479999999999986533221 1222333322 25899999
Q ss_pred cCCCCChHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHV 351 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~ 351 (1250)
|++|.|++++|+++.+.
T Consensus 145 a~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 145 AKSKTMVNELFAEIVRQ 161 (163)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999998654
No 292
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.69 E-value=3.9e-16 Score=162.97 Aligned_cols=148 Identities=21% Similarity=0.327 Sum_probs=103.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCc---ccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDA---LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~---~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
+|+++|++|||||||+|+|++.... ........|.......+.+++..+.+|||||+. .+......++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE---------SLRSLWDKYY 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh---------hhHHHHHHHh
Confidence 4899999999999999999875321 112233446666666778888999999999975 3344556678
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHh-----cCC--CCcEeccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYE-----LGI--GNPHIISA 145 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~-----~~~--~~~~~iSA 145 (1250)
..+|++++|+|+++...... ..+..+++. .+.|+++|+||+|+...... .+++. .+. .+++++||
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 89999999999976321111 122223321 46899999999998664322 22221 111 25799999
Q ss_pred ccCCchhHHHHHHHH
Q psy17091 146 LYGNGIKNFLENILT 160 (1250)
Q Consensus 146 ~~g~gi~~L~~~i~~ 160 (1250)
++|.|++++++++.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999998864
No 293
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.69 E-value=4.6e-16 Score=165.79 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=105.8
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc-C--eeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-N--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
+||+++|.+|||||||++++++.... . .+..|+.+.....+... + ..+.+|||||+. ++.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~-~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~- 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-E-EYVPTVFENYVTNIQGPNGKIIELALWDTAGQE----------EYDRLRP- 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-C-CCCCeeeeeeEEEEEecCCcEEEEEEEECCCch----------hHHHHHH-
Confidence 58999999999999999999976532 2 23334333333344444 3 367889999983 3332222
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH--HHHHHHH--cCCcEEEEEeccccCCccch--HHHHHHHHHHhccCCCCeEEEe
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN--IANFIYE--SGRSLIVCVNKWDSIIHNQR--KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~--~~~~~~~--~~~p~iiv~NK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
.+++.+|++++|+|+++..+.++.. ++..+.. .+.|+++|+||+|+.+.... ....++..+.....+..+++++
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 147 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEc
Confidence 3568999999999999876655543 3333332 36899999999999653210 0111122222222333489999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||++|.|++++|+.+.+.+..
T Consensus 148 Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999877654
No 294
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.69 E-value=4.6e-16 Score=171.83 Aligned_cols=156 Identities=19% Similarity=0.345 Sum_probs=110.2
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||++++++.... ..+.+|+.+.....+.+++. .+.+|||||..+ |...+. .
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~----------~~~~~~-~ 67 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP----------FPAMRR-L 67 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChh----------hhHHHH-H
Confidence 47999999999999999999875532 24555666666666677764 567899999843 222222 3
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH------------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE------------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSF 327 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~------------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~ 327 (1250)
++..+|++|+|+|+++..+.++. .++..+.+ .++|+|+|+||+|+..... ...+++.+.+.....
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~--v~~~ei~~~~~~~~~ 145 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE--VQRDEVEQLVGGDEN 145 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc--cCHHHHHHHHHhcCC
Confidence 56789999999999987554443 34445543 3689999999999975221 122334443332234
Q ss_pred CeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 328 AMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 328 ~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
.+++++||++|.|++++|+++.+...
T Consensus 146 ~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 146 CAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 68999999999999999999987653
No 295
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.69 E-value=1e-15 Score=162.29 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=110.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|..|||||||+.++...... ....|..+.+.....+..++ ..+.+|||||.. ++......++
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~---------~~~~l~~~~~ 76 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG---------RFCTIFRSYS 76 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH---------HHHHHHHHHh
Confidence 48999999999999999999976532 22234556666666667776 478899999975 4445566778
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCch
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~gi 151 (1250)
+.+|++|+|+|.+++.+... ..|.+.+.. .+.|+++|+||+|+.+.... .++. ..+. ..+++||++|.|+
T Consensus 77 ~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~-~~~e~SAk~g~~V 155 (189)
T cd04121 77 RGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM-TFFEVSPLCNFNI 155 (189)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCC-EEEEecCCCCCCH
Confidence 99999999999987533332 223444433 46799999999999654333 2233 3443 6899999999999
Q ss_pred hHHHHHHHHhhC
Q psy17091 152 KNFLENILTIEL 163 (1250)
Q Consensus 152 ~~L~~~i~~~l~ 163 (1250)
+++|+.+.+.+.
T Consensus 156 ~~~F~~l~~~i~ 167 (189)
T cd04121 156 TESFTELARIVL 167 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999997664
No 296
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.68 E-value=8.2e-16 Score=166.46 Aligned_cols=156 Identities=21% Similarity=0.144 Sum_probs=104.2
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
+||+++|.+|||||||+++++..+... ..|.+..+. ....+....+.+|||||+.... ... ..++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~--~~~~~~~~~l~iwDt~G~e~~~----------~l~-~~~~ 65 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAF--YLKQWGPYNISIWDTAGREQFH----------GLG-SMYC 65 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEE--EEEEeeEEEEEEEeCCCcccch----------hhH-HHHh
Confidence 589999999999999999999876432 233222222 2233455678999999995432 212 2457
Q ss_pred ccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCcc-----------------chH---HHHHHH
Q psy17091 263 LEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHN-----------------QRK---IIKNNI 318 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~-----------------~~~---~~~~~l 318 (1250)
+.+|++|+|+|+++..+..+.. .+..+.+ .+.|+|+|+||+|+.+.. ... +..+.+
T Consensus 66 ~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~ 145 (220)
T cd04126 66 RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF 145 (220)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHH
Confidence 8999999999999876665553 3333333 358999999999996510 111 111222
Q ss_pred HHHhc----------cCCCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 319 KKKLN----------FLSFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 319 ~~~l~----------~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
.+... .....+++++||++|.||+++|..+.+.+.
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22221 122368999999999999999999987654
No 297
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.68 E-value=7.2e-16 Score=161.71 Aligned_cols=158 Identities=20% Similarity=0.175 Sum_probs=105.7
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+|++++.... ....+..+.+.....+.+++. .+.+|||||+.. +.. ....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~-~~~~ 68 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER----------FQS-LGVA 68 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHh-HHHH
Confidence 48999999999999999999986532 223333344444455666665 456899999832 221 1235
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH-------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE-------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
+++.+|++++|+|++++.+.+... +...+.. .++|+++|+||+|+.++... ..+.++......+..++++
T Consensus 69 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~ 146 (172)
T cd01862 69 FYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV--STKKAQQWCQSNGNIPYFE 146 (172)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccccc--CHHHHHHHHHHcCCceEEE
Confidence 678999999999998864433332 2222222 27899999999999742211 0112222222333478999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++++++.+...+
T Consensus 147 ~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 147 TSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999876554
No 298
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.68 E-value=8.9e-16 Score=162.35 Aligned_cols=158 Identities=13% Similarity=0.188 Sum_probs=106.1
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||++++++.... ....|.+..+.....+..++. .+.+|||+|.. .|..... .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~~~~-~ 68 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR----------EFINMLP-L 68 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCch----------hHHHhhH-H
Confidence 58999999999999999999876432 223333334554456667764 56789999993 3332222 4
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCc---cchHHHHHHHHHHhccCCCCeEEEe
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIH---NQRKIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~---~~~~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
+++.||++++|+|+++..+.++.. ++..+.. ...| ++|+||+|+... .......++..+.....+ .+++++
T Consensus 69 ~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~ 146 (182)
T cd04128 69 VCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFC 146 (182)
T ss_pred HCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEE
Confidence 678999999999999876655532 4444443 2355 688999999632 111112223333322223 689999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||++|.|++++|+++.+.+.+
T Consensus 147 SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 147 STSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999776543
No 299
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=5.4e-16 Score=166.71 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=106.5
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
||+++|.+|||||||++++++.... ..+..|+.+.....+.+++ ..+.+|||||+.+. ...+. .+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----------~~~~~-~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF----------PAMRK-LS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhh----------hHHHH-HH
Confidence 5899999999999999999986532 3345555555555666666 46788999998433 21222 36
Q ss_pred hccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 262 ILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
++.+|++++|+|++++.+.++.. ++..+.+ .++|+++|+||+|+.+...... .+...+........+++++||+
T Consensus 68 ~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~ 146 (198)
T cd04147 68 IQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP-AKDALSTVELDWNCGFVETSAK 146 (198)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc-HHHHHHHHHhhcCCcEEEecCC
Confidence 68999999999998865544332 2233333 4799999999999975321111 1111111111123578999999
Q ss_pred CCCChHHHHHHHHHHHh
Q psy17091 337 KLNNINSFMESINHVYD 353 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~ 353 (1250)
+|.|++++++++.+.+.
T Consensus 147 ~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 147 DNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999988765
No 300
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.68 E-value=7.2e-16 Score=161.51 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=106.0
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||++++++.... ....+.++.+.....+.+++. .+.+|||||+ +++.....
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~~ 72 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ----------ERFRSLRT 72 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCC-cCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh----------HHHHHhHH
Confidence 4699999999999999999999975432 223344444444455566665 5677999998 33333222
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH-------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE-------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMF 330 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~i 330 (1250)
.+++.+|++++|+|.++..+.+... +...+.. .+.|+++|+||+|+.+.... .+++.+.....+..++
T Consensus 73 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 148 (170)
T cd04116 73 -PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVS---TEEAQAWCRENGDYPY 148 (170)
T ss_pred -HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccC---HHHHHHHHHHCCCCeE
Confidence 4678999999999998865444332 2232222 35799999999999643222 1222333333344689
Q ss_pred EEeecCCCCChHHHHHHHHHH
Q psy17091 331 NFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 331 v~iSA~~g~gv~~l~~~i~~~ 351 (1250)
+++||++|.|++++|+.+.+.
T Consensus 149 ~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 149 FETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 999999999999999988653
No 301
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.68 E-value=3.7e-16 Score=162.99 Aligned_cols=154 Identities=15% Similarity=0.153 Sum_probs=101.7
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+++++..... ....|....+.....+..++ ..+.+|||||+.+.. ... ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~-~~ 68 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG----------GLR-DG 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc----------ccc-HH
Confidence 48999999999999999999864421 11122222222223333333 467789999995432 111 13
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHHc--CCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYES--GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~ 337 (1250)
.++.+|++++|+|++++.+.+... +++.+.+. +.|+++|+||+|+.+.....+ ...+.+ ....+++++||++
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~-~~~~~~----~~~~~~~e~Sa~~ 143 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAK-QITFHR----KKNLQYYEISAKS 143 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHH-HHHHHH----HcCCEEEEEeCCC
Confidence 557899999999999875554443 33444332 699999999999974332211 111221 2347899999999
Q ss_pred CCChHHHHHHHHHHHh
Q psy17091 338 LNNINSFMESINHVYD 353 (1250)
Q Consensus 338 g~gv~~l~~~i~~~~~ 353 (1250)
|.|++++|+++.+.+.
T Consensus 144 ~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 144 NYNFEKPFLWLARKLL 159 (166)
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999999999986654
No 302
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=3.8e-16 Score=152.46 Aligned_cols=116 Identities=41% Similarity=0.649 Sum_probs=97.5
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
+|+|+|.+|||||||+|+|++.+...+++.+++|++.....+.+++..+.++||||+.+........+ .....+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~--~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGK--EIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHH--HHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHH--HHHHHHHHHH
Confidence 69999999999999999999987888999999999998778889999999999999976542221111 2334566778
Q ss_pred cCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEec
Q psy17091 264 EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK 302 (1250)
.+|++++|+|++...++.+..+++++. .++|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 999999999998876778888999886 88999999998
No 303
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=7.7e-16 Score=164.58 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=107.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|.+|||||||++++++.........++++.+.....+.+++ ..+.||||||.. ++......++.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~~ 72 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE---------RFRSVTHAYYR 72 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH---------HHHHhhHHHcc
Confidence 7999999999999999999987643122334444455444455665 478899999954 44455566788
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCch
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~gi 151 (1250)
.+|++++|+|.++..+... ..+...+.. .+.|+++|+||+|+...... ..+. ..+. +++++||++|.|+
T Consensus 73 ~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~Sa~~~~~v 151 (191)
T cd04112 73 DAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV-PFMETSAKTGLNV 151 (191)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCC-eEEEEeCCCCCCH
Confidence 9999999999987432221 223333433 35799999999998643322 2222 2333 6899999999999
Q ss_pred hHHHHHHHHhhCCc
Q psy17091 152 KNFLENILTIELPY 165 (1250)
Q Consensus 152 ~~L~~~i~~~l~~~ 165 (1250)
+++++.+.+.+.+.
T Consensus 152 ~~l~~~l~~~~~~~ 165 (191)
T cd04112 152 ELAFTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999877654
No 304
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=4.7e-16 Score=165.08 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=104.5
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
.++|+++|.+|||||||+|++.+.......+ |.......+.+++.++.+|||||+.+ +... ...+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~-~~~~ 81 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAIGNIKFTTFDLGGHQQ----------ARRL-WKDY 81 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEECCEEEEEEECCCCHH----------HHHH-HHHH
Confidence 5899999999999999999999865433322 33333455667788999999999832 1111 1256
Q ss_pred hccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHH--h-----ccCCCCe
Q psy17091 262 ILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKK--L-----NFLSFAM 329 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~--l-----~~~~~~~ 329 (1250)
++.+|++++|+|+++..+.... ..+..+.+ .++|+++|+||+|+......+++.+.+.-. . ...+...
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeE
Confidence 7899999999999875322221 12332322 579999999999986443333333333210 0 0113456
Q ss_pred EEEeecCCCCChHHHHHHHHH
Q psy17091 330 FNFISAIKLNNINSFMESINH 350 (1250)
Q Consensus 330 iv~iSA~~g~gv~~l~~~i~~ 350 (1250)
++++||++|.|+++++++|.+
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred EEEeecccCCChHHHHHHHHh
Confidence 999999999999999999964
No 305
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.68 E-value=8.8e-16 Score=159.40 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=105.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC----CEEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG----KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
+|+++|.+|||||||+|++++.... ....|+++.+.....+.++ ...+.+|||||.. ++......+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 71 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE---------EFDAITKAY 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH---------HHHHhHHHH
Confidence 7999999999999999999987532 2334555556555555554 3579999999954 444556677
Q ss_pred hhcCCEEEEEEeCCCCCChhhHHHHHHHHh-----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccC
Q psy17091 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRK-----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g 148 (1250)
++.+|++++|+|..+..+ ...+..|+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|
T Consensus 72 ~~~~~~~v~v~d~~~~~s--~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (162)
T cd04106 72 YRGAQACILVFSTTDRES--FEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRTSVKDD 148 (162)
T ss_pred hcCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 899999999999986432 2233344332 36899999999998754432 2223 3444 6899999999
Q ss_pred CchhHHHHHHHHh
Q psy17091 149 NGIKNFLENILTI 161 (1250)
Q Consensus 149 ~gi~~L~~~i~~~ 161 (1250)
.|++++++.+...
T Consensus 149 ~~v~~l~~~l~~~ 161 (162)
T cd04106 149 FNVTELFEYLAEK 161 (162)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998753
No 306
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.68 E-value=4.9e-16 Score=163.35 Aligned_cols=145 Identities=19% Similarity=0.261 Sum_probs=102.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
++|+++|.+|||||||+|+|++....... | |.......+.+++..+.+|||||+. .+...+..+++.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~~~~--~--t~g~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~~~~ 81 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDIDTIS--P--TLGFQIKTLEYEGYKLNIWDVGGQK---------TLRPYWRNYFES 81 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCcC--C--ccccceEEEEECCEEEEEEECCCCH---------HHHHHHHHHhCC
Confidence 58999999999999999999987533222 2 2223344556678899999999975 334455667889
Q ss_pred CCEEEEEEeCCCCCCh--hhHHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHhc-----CCCCcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYEL-----GIGNPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~~-----~~~~~~~iSA~~g~ 149 (1250)
+|++++|+|+++..+. ....+..++.. .+.|+++|+||+|+.+.... .+.... ...+++++||++|.
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 82 TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 9999999999874221 12223333332 57899999999998754322 222221 11257999999999
Q ss_pred chhHHHHHHHH
Q psy17091 150 GIKNFLENILT 160 (1250)
Q Consensus 150 gi~~L~~~i~~ 160 (1250)
|++++++++..
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999998863
No 307
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=5.1e-16 Score=165.59 Aligned_cols=157 Identities=17% Similarity=0.107 Sum_probs=105.9
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
||+++|.+|||||||++++++..... .+.+|..+.....+..++ ..+.+|||||+.+.. ..+. .+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~----------~l~~-~~ 68 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD----------RLRS-LS 68 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhcc----------cccc-cc
Confidence 79999999999999999999765422 222232222223344444 467889999984332 2222 35
Q ss_pred hccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCccchHHH----------HHHHHHHhccCCC
Q psy17091 262 ILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQRKII----------KNNIKKKLNFLSF 327 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~----------~~~l~~~l~~~~~ 327 (1250)
++.+|++++|+|.++..+.+.. .++..+.. .+.|+++|+||+|+.+....... .++..+.....+.
T Consensus 69 ~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 148 (189)
T cd04134 69 YADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINA 148 (189)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 6889999999999987666544 24555554 37899999999999754322111 1112222233344
Q ss_pred CeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 328 AMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 328 ~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
.+++++||++|.|++++|+++.+.+.
T Consensus 149 ~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 149 LRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred CEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 68999999999999999999977654
No 308
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.68 E-value=7.1e-16 Score=161.79 Aligned_cols=150 Identities=18% Similarity=0.131 Sum_probs=108.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||++++.+.... ..+.+++.+.....+.+++ ..+.||||||.. ++......++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~l~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQA---------EFTAMRDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCch---------hhHHHhHHHh
Confidence 48999999999999999999977632 2333344444444566666 468899999975 3445566678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|.++..+... ..+.+++.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sa~~~~ 150 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFETSAALRH 150 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCC-EEEEEecCCCC
Confidence 89999999999987544433 223344443 46899999999998654433 2222 3344 67899999999
Q ss_pred chhHHHHHHHHhhCC
Q psy17091 150 GIKNFLENILTIELP 164 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~ 164 (1250)
|++++++++...+..
T Consensus 151 ~v~~~f~~l~~~~~~ 165 (172)
T cd04141 151 YIDDAFHGLVREIRR 165 (172)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999876653
No 309
>PRK12289 GTPase RsgA; Reviewed
Probab=99.68 E-value=3.1e-16 Score=179.93 Aligned_cols=143 Identities=26% Similarity=0.380 Sum_probs=106.7
Q ss_pred HHHHhhcCCEEEEEEeCCCCCChhhHHHHHHH---HhcCCCEEEEEeCCCCCCCccc---hhH-HhcCCCCcEecccccC
Q psy17091 76 TKQAIIESDIIIFIVDGRQGLVEQDKLITNFL---RKSGQPIVLVINKSENINSSIS---LDF-YELGIGNPHIISALYG 148 (1250)
Q Consensus 76 ~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l---~~~~~p~ilv~NK~D~~~~~~~---~~~-~~~~~~~~~~iSA~~g 148 (1250)
...++.++|.+++|+|+.++.. ....+.+++ ...++|+++|+||+|+.+.... .+. ...|+ .++++||+++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~-~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~-~v~~iSA~tg 160 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPL-DPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGY-QPLFISVETG 160 (352)
T ss_pred echhhhcCCEEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCC-eEEEEEcCCC
Confidence 3445889999999999986432 222233333 3468999999999999765432 222 25566 7899999999
Q ss_pred CchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCC-------cceeeE
Q psy17091 149 NGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG-------TTRDSI 221 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~g-------tT~~~~ 221 (1250)
.|+++|++.+.. ..++|+|.||||||||+|+|++.....++..++ ||++..
T Consensus 161 ~GI~eL~~~L~~----------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~ 218 (352)
T PRK12289 161 IGLEALLEQLRN----------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVE 218 (352)
T ss_pred CCHHHHhhhhcc----------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeE
Confidence 999999887731 127999999999999999999988888888888 888874
Q ss_pred EEEEEEcCeeEEEEecCCCCCCCc
Q psy17091 222 KSLFEYNNKKYILIDTAGIRRRNK 245 (1250)
Q Consensus 222 ~~~~~~~~~~~~liDTpG~~~~~~ 245 (1250)
...+ .+ ...|+||||+.....
T Consensus 219 l~~l--~~-g~~liDTPG~~~~~l 239 (352)
T PRK12289 219 LFEL--PN-GGLLADTPGFNQPDL 239 (352)
T ss_pred EEEC--CC-CcEEEeCCCcccccc
Confidence 4433 22 237999999977654
No 310
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.68 E-value=2.8e-16 Score=171.30 Aligned_cols=148 Identities=26% Similarity=0.313 Sum_probs=110.5
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcce------------------------------eccCCCCcceeeEEEEEEEcCeeEE
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRV------------------------------ITYDTPGTTRDSIKSLFEYNNKKYI 233 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~------------------------------~~~~~~gtT~~~~~~~~~~~~~~~~ 233 (1250)
+|+++|++++|||||+.+|+..... ......|+|++.....+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999732100 0112569999999999999999999
Q ss_pred EEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCC-------CCHHHHHHHHHHHHcC-CcEEEEEecccc
Q psy17091 234 LIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-------ISAQDINIANFIYESG-RSLIVCVNKWDS 305 (1250)
Q Consensus 234 liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~-------~~~~d~~~~~~~~~~~-~p~iiv~NK~Dl 305 (1250)
+|||||+.+ |. .....+++.+|++++|+|++++ ...+....+......+ +|+++|+||+|+
T Consensus 81 liDtpG~~~----------~~-~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl 149 (219)
T cd01883 81 ILDAPGHRD----------FV-PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDD 149 (219)
T ss_pred EEECCChHH----------HH-HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 999999832 21 2344567889999999999983 4456666666666666 689999999999
Q ss_pred CC----ccchHHHHHHHHHHhccCC----CCeEEEeecCCCCChH
Q psy17091 306 II----HNQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNIN 342 (1250)
Q Consensus 306 ~~----~~~~~~~~~~l~~~l~~~~----~~~iv~iSA~~g~gv~ 342 (1250)
.. ........++++..+...+ ..+++++||++|.|++
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 150 VTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 73 2334555666665554443 3689999999999987
No 311
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.68 E-value=6.8e-16 Score=162.45 Aligned_cols=147 Identities=19% Similarity=0.257 Sum_probs=102.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||++++..... ....|++..+. ..+...+..+.+|||||.. ++...+..++++
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~--~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~~~~ 80 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNV--ETVTYKNISFTVWDVGGQD---------KIRPLWRHYYTN 80 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccce--EEEEECCEEEEEEECCCCh---------hhHHHHHHHhCC
Confidence 5899999999999999999975542 33445444333 3455678899999999975 344556667899
Q ss_pred CCEEEEEEeCCCCCC--hhhHHHHHHHHh---cCCCEEEEEeCCCCCCCccchhHH-hcCCC-------CcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLV--EQDKLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGIG-------NPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~--~~~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~-~~~~~-------~~~~iSA~~g~ 149 (1250)
+|++|||+|++++.+ .....+..+++. .+.|+++|+||+|+.+.....++. .++.. .++++||++|.
T Consensus 81 ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 81 TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 999999999986422 222233333332 357999999999986543222221 12221 24589999999
Q ss_pred chhHHHHHHHHhh
Q psy17091 150 GIKNFLENILTIE 162 (1250)
Q Consensus 150 gi~~L~~~i~~~l 162 (1250)
|+++++++|.+.+
T Consensus 161 gv~e~~~~l~~~~ 173 (175)
T smart00177 161 GLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999997653
No 312
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=4.7e-16 Score=162.28 Aligned_cols=154 Identities=19% Similarity=0.188 Sum_probs=103.7
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEE--cCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY--NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+|++.+.... ..++.++ +.......+ .+..+.+|||||..... .....
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~~ 66 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDR-----------ANLAA 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhh-----------HHHhh
Confidence 48999999999999999999986542 2344332 222232333 34578899999984321 11234
Q ss_pred hhccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCccchH---HHHHHHHHHhccCCCCeEEEe
Q psy17091 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQRK---IIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~---~~~~~l~~~l~~~~~~~iv~i 333 (1250)
.++.+|++++|+|++++.+.++. .+...+.+ .+.|+++|+||+|+.+..... +....+...+.. ..+++++
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 144 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE--IETCVEC 144 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc--ccEEEEe
Confidence 56889999999999987665553 34444443 378999999999997644321 212222222221 2479999
Q ss_pred ecCCCCChHHHHHHHHHHH
Q psy17091 334 SAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~ 352 (1250)
||++|.|++++|+.+.+..
T Consensus 145 Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 145 SAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred ccccccCHHHHHHHHHHHh
Confidence 9999999999999987764
No 313
>KOG1489|consensus
Probab=99.68 E-value=2.4e-16 Score=168.54 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=123.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee-EEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK-YILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~-~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
..|++||.||+|||||+|+|...+. .+.++++||..+....+.+++.. +.+-|.||+.+..+.... .-...+++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkG----lG~~FLrH 271 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKG----LGYKFLRH 271 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCc----ccHHHHHH
Confidence 4699999999999999999998775 66699999999999999998764 999999999876644332 23456899
Q ss_pred hccCcEEEEEecCCCC---CCHHHHHHHHHHHH------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 262 ILEANVVILLLDAQQN---ISAQDINIANFIYE------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~---~~~~d~~~~~~~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
+.+|+.++||+|.+.+ ...++..++..-.+ ..+|.+||+||+|+.+. .+...+++.+.+. ...+++
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~lq---~~~V~p 346 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA--EKNLLSSLAKRLQ---NPHVVP 346 (366)
T ss_pred HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH--HHHHHHHHHHHcC---CCcEEE
Confidence 9999999999999886 33444444332222 36899999999998532 2333456666555 235999
Q ss_pred eecCCCCChHHHHHHHHHH
Q psy17091 333 ISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~ 351 (1250)
+||++++|+++|++.+.+.
T Consensus 347 vsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeeccccchHHHHHHHhhc
Confidence 9999999999999988654
No 314
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=1e-15 Score=161.82 Aligned_cols=148 Identities=18% Similarity=0.232 Sum_probs=105.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||++++..... ....|++..+ ...++.++..+.+|||||+. ++...+..++++
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~--~~~~pt~g~~--~~~~~~~~~~~~i~D~~Gq~---------~~~~~~~~~~~~ 84 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFN--VETVEYKNISFTVWDVGGQD---------KIRPLWRHYFQN 84 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--ccccCCccee--EEEEEECCEEEEEEECCCCH---------HHHHHHHHHhcc
Confidence 5899999999999999999986543 3334444333 34566778899999999964 455666778899
Q ss_pred CCEEEEEEeCCCCCChh--hHHHHHHHHh---cCCCEEEEEeCCCCCCCccchhHH-hcCCC-------CcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLVEQ--DKLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGIG-------NPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~--~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~-~~~~~-------~~~~iSA~~g~ 149 (1250)
+|++|||+|+++..+-. ..++.+++.. .+.|+++|+||+|+.+.....++. .+++. ..+++||++|+
T Consensus 85 a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCC
Confidence 99999999998642211 1223333322 368999999999987654333322 23332 23579999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|+.++++++.+.+.
T Consensus 165 gv~e~~~~l~~~~~ 178 (181)
T PLN00223 165 GLYEGLDWLSNNIA 178 (181)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987653
No 315
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.68 E-value=4.8e-16 Score=161.26 Aligned_cols=153 Identities=17% Similarity=0.137 Sum_probs=103.5
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+++|++.+.... ..+..+.+.....+..++ ..+.+|||||+. .+.. ....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~-~~~~ 68 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKED-SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE----------RFRS-VTRS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeEEEEEEEECCEEEEEEEEECcchH----------HHHH-hHHH
Confidence 4899999999999999999997654222 233333333334445555 467799999983 2221 2235
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
.++.+|++++|+|++++.+.+... ++..+.. .+.|+++|+||+|+.+.... .+....+... .. .+++++||
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~---~~-~~~~~~Sa 144 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQE---NG-LLFLETSA 144 (161)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHH---cC-CEEEEEEC
Confidence 668999999999999875554432 3333322 47899999999999753322 1122222222 22 68999999
Q ss_pred CCCCChHHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINHV 351 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (1250)
++|.|++++++++.+.
T Consensus 145 ~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 145 LTGENVEEAFLKCARS 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998653
No 316
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.68 E-value=5.7e-16 Score=162.76 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=104.5
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+.+++.... ...+..|..+.....+..++. .+.+|||||..+. .... ..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~-~~ 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLR-PL 68 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhh----------hhhh-hh
Confidence 6899999999999999999997543 223344444444445556654 5778999998432 2222 24
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH--HHHHHHH--cCCcEEEEEeccccCCccc-hH---------HHHHHHHHHhccCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN--IANFIYE--SGRSLIVCVNKWDSIIHNQ-RK---------IIKNNIKKKLNFLS 326 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~--~~~~~~~--~~~p~iiv~NK~Dl~~~~~-~~---------~~~~~l~~~l~~~~ 326 (1250)
+++.+|++|+|+|+++..+.++.. ++..+.. .+.|+++|+||+|+.+... .+ ...++..+.....+
T Consensus 69 ~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 148 (174)
T cd01871 69 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 148 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 678999999999999876655542 3443433 3689999999999964321 00 01111222222233
Q ss_pred CCeEEEeecCCCCChHHHHHHHHH
Q psy17091 327 FAMFNFISAIKLNNINSFMESINH 350 (1250)
Q Consensus 327 ~~~iv~iSA~~g~gv~~l~~~i~~ 350 (1250)
..+++++||++|.|++++|+.+.+
T Consensus 149 ~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 149 AVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CcEEEEecccccCCHHHHHHHHHH
Confidence 458999999999999999998865
No 317
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.68 E-value=9e-16 Score=159.48 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=102.5
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCccee-ccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVI-TYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
+||+++|.+|||||||+|++++.+... ..+..|.+.. ...+.+++ ..+.+|||||.. ++.... .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~----------~~~~~~-~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQE----------RYRSLA-P 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchH----------HHHHHH-H
Confidence 789999999999999999999876543 2233333232 23444444 467889999972 232222 2
Q ss_pred HhhccCcEEEEEecCCCCCCHHH-HHHHHHHHHc---CCcEEEEEeccccCCccc-hHHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQD-INIANFIYES---GRSLIVCVNKWDSIIHNQ-RKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d-~~~~~~~~~~---~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|+++..+... ..++..+... +.|+++|+||+|+.+... ..+....+.... . .+++++|
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---~-~~~~~~S 144 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADEN---G-LLFFETS 144 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHc---C-CEEEEEE
Confidence 46688999999999987543322 2344444443 588999999999874321 111122222222 2 6899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHVY 352 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (1250)
|++|.|++++++++.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 145 AKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999987754
No 318
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.68 E-value=4.3e-16 Score=160.64 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=97.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|++|||||||+|+|.+.... ...| ..+.+.+. .+|||||+..... ++......+++.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~-----~~~~-----~~v~~~~~--~~iDtpG~~~~~~-----~~~~~~~~~~~~ 64 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL-----ARKT-----QAVEFNDK--GDIDTPGEYFSHP-----RWYHALITTLQD 64 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc-----Cccc-----eEEEECCC--CcccCCccccCCH-----HHHHHHHHHHhc
Confidence 48999999999999999999876521 1112 22233332 2799999753331 233334455789
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc--hhHH-hcCC-CCcEecccccCCchhHHHHHH
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFY-ELGI-GNPHIISALYGNGIKNFLENI 158 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~--~~~~-~~~~-~~~~~iSA~~g~gi~~L~~~i 158 (1250)
+|++++|+|++.+.+.....+.+. ..++|+++++||+|+.+.... .++. ..++ .+++++||++|.|++++++.+
T Consensus 65 ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 65 VDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHH
Confidence 999999999987644333333222 246799999999998653322 2322 4554 378999999999999999999
Q ss_pred HHhhCC
Q psy17091 159 LTIELP 164 (1250)
Q Consensus 159 ~~~l~~ 164 (1250)
.+.+..
T Consensus 143 ~~~~~~ 148 (158)
T PRK15467 143 ASLTKQ 148 (158)
T ss_pred HHhchh
Confidence 876643
No 319
>KOG0078|consensus
Probab=99.68 E-value=9.9e-16 Score=156.54 Aligned_cols=151 Identities=19% Similarity=0.120 Sum_probs=119.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||+++-++...... .+.......|.....++.++. .+++|||+|++ ++...+..++
T Consensus 13 ~kvlliGDs~vGKt~~l~rf~d~~f~-~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQe---------rf~ti~~sYy 82 (207)
T KOG0078|consen 13 FKLLLIGDSGVGKTCLLLRFSDDSFN-TSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQE---------RFRTITTAYY 82 (207)
T ss_pred EEEEEECCCCCchhHhhhhhhhccCc-CCccceEEEEEEEEEEEeCCeEEEEEEEEcccch---------hHHHHHHHHH
Confidence 58999999999999999999987654 444555677888888888875 78899999976 8888899999
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc----hhHH--hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS----LDFY--ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~----~~~~--~~~~~~~~~iSA~~g~g 150 (1250)
+.|+++++|+|.+...+-+. ..|.+++.+ .+.|.++|+||||+.....+ .+.+ ++|. .++++||++|.|
T Consensus 83 rgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~-~F~EtSAk~~~N 161 (207)
T KOG0078|consen 83 RGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI-KFFETSAKTNFN 161 (207)
T ss_pred hhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-eEEEccccCCCC
Confidence 99999999999987433222 224444444 46899999999999876555 2222 5565 789999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
|++.+-.+...+..
T Consensus 162 I~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 162 IEEAFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876653
No 320
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=7.4e-16 Score=162.29 Aligned_cols=157 Identities=15% Similarity=0.173 Sum_probs=107.2
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
++||+++|.+|||||||++++.+... . ..+.+|..+.....+..++. .+.+|||||.. .|...+.
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~----------~~~~~~~- 67 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCY-P-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSP----------YYDNVRP- 67 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcC-C-CCcCCceEEEEEEEEEECCEEEEEEEEECCCch----------hhhhcch-
Confidence 37899999999999999999997643 2 23344443433445566664 56789999983 3332222
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCc----------cchHHHHHHHHHHhccC
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIH----------NQRKIIKNNIKKKLNFL 325 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~----------~~~~~~~~~l~~~l~~~ 325 (1250)
.+++.+|++++|+|.++..+.++. .+...+.+ .+.|+++|+||+||.+. .......++..+.....
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 147 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL 147 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 467899999999999998776663 35555544 36899999999999541 00011122233333333
Q ss_pred CCCeEEEeecCCCCC-hHHHHHHHHHH
Q psy17091 326 SFAMFNFISAIKLNN-INSFMESINHV 351 (1250)
Q Consensus 326 ~~~~iv~iSA~~g~g-v~~l~~~i~~~ 351 (1250)
+..+++++||++|.| |+++|..+.+.
T Consensus 148 ~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 148 GAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 334899999999995 99999988774
No 321
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.68 E-value=3.7e-16 Score=161.12 Aligned_cols=146 Identities=17% Similarity=0.235 Sum_probs=97.2
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
+|+++|.+|||||||+|+|.|..... ..| ..+.+.+. .+|||||+..... +.+ .....+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-----~~~-----~~v~~~~~--~~iDtpG~~~~~~-----~~~--~~~~~~~~ 63 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-----RKT-----QAVEFNDK--GDIDTPGEYFSHP-----RWY--HALITTLQ 63 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-----ccc-----eEEEECCC--CcccCCccccCCH-----HHH--HHHHHHHh
Confidence 69999999999999999999864211 111 22233333 2799999854421 111 12234578
Q ss_pred cCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHH
Q psy17091 264 EANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINS 343 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~ 343 (1250)
.||++++|+|++++.+.....++.. ..++|+++++||+|+.+. ......+.+. .+.. ..|++++||++|+|+++
T Consensus 64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~-~~~~--~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA-DVAATRKLLL-ETGF--EEPIFELNSHDPQSVQQ 137 (158)
T ss_pred cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc-cHHHHHHHHH-HcCC--CCCEEEEECCCccCHHH
Confidence 9999999999998755433333321 246899999999998543 2222222222 2221 25999999999999999
Q ss_pred HHHHHHHHHhh
Q psy17091 344 FMESINHVYDS 354 (1250)
Q Consensus 344 l~~~i~~~~~~ 354 (1250)
+++.+.+....
T Consensus 138 l~~~l~~~~~~ 148 (158)
T PRK15467 138 LVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHhchh
Confidence 99999887654
No 322
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=8.2e-16 Score=163.23 Aligned_cols=146 Identities=22% Similarity=0.264 Sum_probs=104.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|++.+.+.+.+ .| |.......+.+++..+.+|||||+. .+......++.+
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~~~~~ 84 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQH--QP--TQHPTSEELAIGNIKFTTFDLGGHQ---------QARRLWKDYFPE 84 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCccc--CC--ccccceEEEEECCEEEEEEECCCCH---------HHHHHHHHHhCC
Confidence 6899999999999999999998764432 22 4444455667788999999999975 334445677889
Q ss_pred CCEEEEEEeCCCCC--ChhhHHHHHHHHh---cCCCEEEEEeCCCCCCCccchh---HHhc------------CCCCcEe
Q psy17091 83 SDIIIFIVDGRQGL--VEQDKLITNFLRK---SGQPIVLVINKSENINSSISLD---FYEL------------GIGNPHI 142 (1250)
Q Consensus 83 ad~il~v~D~~~~~--~~~~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~---~~~~------------~~~~~~~ 142 (1250)
+|++++|+|+++.. ......+.++++. .++|+++|+||+|+.......+ .+.+ ....+++
T Consensus 85 ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~ 164 (184)
T smart00178 85 VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFM 164 (184)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEE
Confidence 99999999998642 1222233333332 5789999999999864322211 1111 1224789
Q ss_pred cccccCCchhHHHHHHHHh
Q psy17091 143 ISALYGNGIKNFLENILTI 161 (1250)
Q Consensus 143 iSA~~g~gi~~L~~~i~~~ 161 (1250)
+||++|.|++++++++.+.
T Consensus 165 ~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 165 CSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eecccCCChHHHHHHHHhh
Confidence 9999999999999999753
No 323
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.68 E-value=3.5e-16 Score=164.43 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=107.2
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+|++++|.+|||||||++++.+... ...+++|+.+.....+..++. .+.+|||||+.+.. ..+. .
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~-~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFD----------KLRP-L 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhc----------cccc-c
Confidence 5899999999999999999987542 335666766665556666654 66789999994332 2222 3
Q ss_pred hhccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCccc----------hHHHHHHHHHHhccCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQ----------RKIIKNNIKKKLNFLS 326 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~~----------~~~~~~~l~~~l~~~~ 326 (1250)
+++.+|++++|+|.++..+.+.. .++..+.. .+.|+++|+||+|+.+... .....++........+
T Consensus 68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 147 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147 (173)
T ss_pred ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence 66899999999999987655443 35555544 4699999999999964321 1111122222222333
Q ss_pred CCeEEEeecCCCCChHHHHHHHH
Q psy17091 327 FAMFNFISAIKLNNINSFMESIN 349 (1250)
Q Consensus 327 ~~~iv~iSA~~g~gv~~l~~~i~ 349 (1250)
..+++++||++|.|++++|+.+.
T Consensus 148 ~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 148 ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHH
Confidence 45899999999999999998874
No 324
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.68 E-value=5.5e-16 Score=189.59 Aligned_cols=156 Identities=19% Similarity=0.277 Sum_probs=121.0
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe-eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
++.+|+++|++|+|||||+++|.+.+.. ....+|+|.+.....+.+++. .+++|||||+.++ ...+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F----------~~~r~- 153 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF----------TSMRA- 153 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcch----------hhHHH-
Confidence 4689999999999999999999986543 346788999887777888655 8999999999543 22222
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHH--h--ccCCCCeEEEeec
Q psy17091 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK--L--NFLSFAMFNFISA 335 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~--l--~~~~~~~iv~iSA 335 (1250)
+.++.+|++++|+|++++...+....+..+...++|+++++||+|+.+. ..+...+.+... . .+....+++++||
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSA 232 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSA 232 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEEC
Confidence 4568899999999999999999999888888889999999999999643 222333333221 0 0112357999999
Q ss_pred CCCCChHHHHHHHH
Q psy17091 336 IKLNNINSFMESIN 349 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~ 349 (1250)
++|.|++++++++.
T Consensus 233 ktGeGI~eLl~~I~ 246 (587)
T TIGR00487 233 LTGDGIDELLDMIL 246 (587)
T ss_pred CCCCChHHHHHhhh
Confidence 99999999999885
No 325
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.68 E-value=7e-16 Score=160.80 Aligned_cols=146 Identities=19% Similarity=0.180 Sum_probs=99.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC--CEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG--KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|++++.... ....|. +..........+ ...+.+|||||+.. +......++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPT-IEDTYRQVISCSKNICTLQITDTTGSHQ---------FPAMQRLSI 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCc-chheEEEEEEECCEEEEEEEEECCCCCc---------chHHHHHHh
Confidence 48999999999999999999987632 222222 212222222333 35788999999863 223344567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh------cCCCEEEEEeCCCCCCCccc--h--h-HH-hcCCCCcEeccccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENINSSIS--L--D-FY-ELGIGNPHIISALY 147 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~D~~~~~~~--~--~-~~-~~~~~~~~~iSA~~ 147 (1250)
..+|++++|+|.++..+... ..+.++++. .+.|+++|+||+|+...... . . +. ..+. .++++||++
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA~~ 149 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNC-AFMETSAKT 149 (165)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCC-cEEEeecCC
Confidence 89999999999987543322 334444443 35799999999999764333 1 1 11 2233 678999999
Q ss_pred CCchhHHHHHHHH
Q psy17091 148 GNGIKNFLENILT 160 (1250)
Q Consensus 148 g~gi~~L~~~i~~ 160 (1250)
|.|++++++.+.+
T Consensus 150 g~~v~~~f~~l~~ 162 (165)
T cd04140 150 NHNVQELFQELLN 162 (165)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999875
No 326
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.68 E-value=9e-16 Score=160.09 Aligned_cols=152 Identities=21% Similarity=0.107 Sum_probs=101.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC--CEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG--KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|.+|||||||+|+++..... ....|....+.....+..+ ...+.+|||||+... .......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~~~~ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF---------GGLRDGYY 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh---------ccccHHHh
Confidence 37999999999999999999866522 1222322233333333333 357899999997522 22233456
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCCccc---hhHHhcCCCCcEecccccCCchhHH
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS---LDFYELGIGNPHIISALYGNGIKNF 154 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~~iSA~~g~gi~~L 154 (1250)
..+|++|+|+|.+++.+... ..+.+.+.+ .+.|+++|+||+|+.+.... .++......+++++||++|.|++++
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKP 150 (166)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHH
Confidence 79999999999987432222 123233332 26899999999998743322 2333333346899999999999999
Q ss_pred HHHHHHhhCC
Q psy17091 155 LENILTIELP 164 (1250)
Q Consensus 155 ~~~i~~~l~~ 164 (1250)
++.+.+.+.+
T Consensus 151 f~~l~~~~~~ 160 (166)
T cd00877 151 FLWLARKLLG 160 (166)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 327
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.68 E-value=6.4e-16 Score=160.35 Aligned_cols=146 Identities=20% Similarity=0.216 Sum_probs=98.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|+++|.+|||||||+++|++.........|.+. .....+...+..+.+|||||.. ++...+..+++.+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g--~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~~ 69 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG--FNVESFEKGNLSFTAFDMSGQG---------KYRGLWEHYYKNI 69 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc--cceEEEEECCEEEEEEECCCCH---------hhHHHHHHHHccC
Confidence 4899999999999999999986422111222222 2223345678899999999975 3444556678899
Q ss_pred CEEEEEEeCCCCCChh--hHHHHHHHH-----hcCCCEEEEEeCCCCCCCccc---hhHHhcC----C-CCcEecccccC
Q psy17091 84 DIIIFIVDGRQGLVEQ--DKLITNFLR-----KSGQPIVLVINKSENINSSIS---LDFYELG----I-GNPHIISALYG 148 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~--~~~~~~~l~-----~~~~p~ilv~NK~D~~~~~~~---~~~~~~~----~-~~~~~iSA~~g 148 (1250)
|+++||+|++++.+.. ...+..+++ ..++|+++|+||+|+.+.... .+..... . -.++++||++|
T Consensus 70 d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g 149 (162)
T cd04157 70 QGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTG 149 (162)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCC
Confidence 9999999998743221 112222222 246899999999998754322 1121111 1 13689999999
Q ss_pred CchhHHHHHHHH
Q psy17091 149 NGIKNFLENILT 160 (1250)
Q Consensus 149 ~gi~~L~~~i~~ 160 (1250)
.|++++++++..
T Consensus 150 ~gv~~~~~~l~~ 161 (162)
T cd04157 150 EGLDEGVQWLQA 161 (162)
T ss_pred CchHHHHHHHhc
Confidence 999999998853
No 328
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.68 E-value=7.1e-16 Score=159.63 Aligned_cols=144 Identities=19% Similarity=0.283 Sum_probs=99.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
||+++|.+|||||||++++..... ....|++..+ ...+...+..+.+|||||+. ++...+..+++++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~--~~~~pt~g~~--~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFN--VETVEYKNISFTVWDVGGQD---------KIRPLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--cccCCCCCcc--eEEEEECCEEEEEEECCCCH---------hHHHHHHHHhcCC
Confidence 799999999999999999976543 2334443333 33455677899999999975 3445566778999
Q ss_pred CEEEEEEeCCCCC--ChhhHHHHHHHHh---cCCCEEEEEeCCCCCCCccchhHH-hcCCC-------CcEecccccCCc
Q psy17091 84 DIIIFIVDGRQGL--VEQDKLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGIG-------NPHIISALYGNG 150 (1250)
Q Consensus 84 d~il~v~D~~~~~--~~~~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~-~~~~~-------~~~~iSA~~g~g 150 (1250)
|+++||+|+++.. ......+.+.+.. .+.|+++|+||+|+.+.....+.. .++.. .++++||++|.|
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999998642 2222223333332 358999999999986542221211 11110 346899999999
Q ss_pred hhHHHHHHHH
Q psy17091 151 IKNFLENILT 160 (1250)
Q Consensus 151 i~~L~~~i~~ 160 (1250)
+++++++|.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999998853
No 329
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.68 E-value=6.2e-16 Score=165.67 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=105.6
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceee-EEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDS-IKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~-~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
+||+++|.+|||||||++++++.... .+++.+|.... ....+..++.. +.+|||||..+.. .. ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----------~~-~~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE----------AM-SR 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhh----------hh-hH
Confidence 48999999999999999999986543 22344444332 23456666654 5589999984321 11 12
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHHc--CCcEEEEEeccccCCccc--hHHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYES--GRSLIVCVNKWDSIIHNQ--RKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~~--~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|+++..+.++. .++..+... +.|+++|+||+|+.+... .....+++.+..... ..+++++|
T Consensus 69 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~S 147 (193)
T cd04118 69 IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI-KAQHFETS 147 (193)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc-CCeEEEEe
Confidence 356789999999999886444332 345555443 689999999999865321 111112222222212 36799999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q psy17091 335 AIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (1250)
|++|.|++++++++.+.+.
T Consensus 148 a~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 148 SKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987764
No 330
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.67 E-value=7.8e-16 Score=160.02 Aligned_cols=148 Identities=21% Similarity=0.164 Sum_probs=103.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+++++..... ..+.+++.+.....+..++. .+.||||||.+. +......++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ---------FASMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCccc---------ccchHHHHH
Confidence 58999999999999999999987532 33344444555555666664 577899999752 333445567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
+++|++++|+|.++..+-.+ ..+...+.. .++|+++|+||+|+...... ..+. ..+. +++++||++|.
T Consensus 71 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAKSKT 149 (163)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEecCCCCC
Confidence 89999999999987432222 223333333 46899999999998654332 1111 2333 67899999999
Q ss_pred chhHHHHHHHHhh
Q psy17091 150 GIKNFLENILTIE 162 (1250)
Q Consensus 150 gi~~L~~~i~~~l 162 (1250)
|++++++.+.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998644
No 331
>PTZ00369 Ras-like protein; Provisional
Probab=99.67 E-value=1.3e-15 Score=162.47 Aligned_cols=156 Identities=18% Similarity=0.153 Sum_probs=106.3
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||++++.+.... ..+..|+.+.....+..++. .+.+|||||+.+.. ...
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~l~- 70 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS----------AMR- 70 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch----------hhH-
Confidence 3589999999999999999999976532 23334444444455556655 46679999995432 222
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~ 332 (1250)
..+++.+|++++|+|+++..+.++.. +...+.+ .+.|+++|+||+|+.+..... .....+.+.+ ..++++
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~----~~~~~e 146 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSF----GIPFLE 146 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHh----CCEEEE
Confidence 24668899999999999875543333 3333332 368999999999986432211 1122222222 258999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q psy17091 333 ISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+||++|.|++++|+++.+.+.
T Consensus 147 ~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 147 TSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999977654
No 332
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.67 E-value=9.4e-16 Score=163.74 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=106.9
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||++++...... ..+..|..+.....+..++. .+.+|||||+ ++|...+.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------e~~~~l~~- 69 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP--KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ----------EEYDRLRT- 69 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC--cCCCCceEeeeEEEEEECCEEEEEEEEECCCc----------hhhhhhhh-
Confidence 589999999999999999999975432 22333333333334455554 5677999999 44443333
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH--HHHHHHH--cCCcEEEEEeccccCCccch-HH---------HHHHHHHHhccC
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN--IANFIYE--SGRSLIVCVNKWDSIIHNQR-KI---------IKNNIKKKLNFL 325 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~--~~~~~~~--~~~p~iiv~NK~Dl~~~~~~-~~---------~~~~l~~~l~~~ 325 (1250)
.+++.||++++|+|+++..+.+... +...+.. .+.|+++|+||.||.+.... +. ..++.++.....
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 4678999999999999876655553 3333332 47899999999999643211 10 111222222223
Q ss_pred CCCeEEEeecCCCCChHHHHHHHHHHH
Q psy17091 326 SFAMFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 326 ~~~~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
+..+++++||++|.|++++|+++.+.+
T Consensus 150 ~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 150 HAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999997655
No 333
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.67 E-value=1.7e-15 Score=157.21 Aligned_cols=153 Identities=22% Similarity=0.220 Sum_probs=105.5
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||++++++.+.. ....|.+..+.....+..++. .+.+|||||..+ +... ...
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~-~~~ 68 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER----------YQTI-TKQ 68 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh----------HHhh-HHH
Confidence 47999999999999999999976542 223444444554456666664 567899999832 2222 224
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|.++.-+.++.. ++..+.. .+.|+++|+||+|+.+.... .+....+.+... .+++++||
T Consensus 69 ~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~----~~~~e~Sa 144 (161)
T cd04117 69 YYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG----MDFFETSA 144 (161)
T ss_pred HhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC----CEEEEEeC
Confidence 678999999999998864444432 3333322 36899999999999754322 222333333332 68999999
Q ss_pred CCCCChHHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINHV 351 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (1250)
++|.|++++|.+|.+.
T Consensus 145 ~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 145 CTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998654
No 334
>PRK12735 elongation factor Tu; Reviewed
Probab=99.67 E-value=6.6e-16 Score=182.85 Aligned_cols=151 Identities=18% Similarity=0.209 Sum_probs=116.3
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCC------ccee---------ccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGE------NRVI---------TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~------~~~~---------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
++.++|+++|++|+|||||+++|++. .... .....|+|.+.....+..++.++.++||||+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA--- 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH---
Confidence 45799999999999999999999862 1110 11267999998877787788899999999992
Q ss_pred cchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEE-EEEeccccCCccc-hHHHHHHHHHHh
Q psy17091 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLI-VCVNKWDSIIHNQ-RKIIKNNIKKKL 322 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~i-iv~NK~Dl~~~~~-~~~~~~~l~~~l 322 (1250)
.|. ..+...+..+|++++|+|+..+...++.+.+..+...++|.+ +|+||+|+.+..+ .+...++++..+
T Consensus 87 -------~f~-~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l 158 (396)
T PRK12735 87 -------DYV-KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred -------HHH-HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 332 344566788999999999999999999999999888999976 5799999985332 233444566655
Q ss_pred ccCC----CCeEEEeecCCCCCh
Q psy17091 323 NFLS----FAMFNFISAIKLNNI 341 (1250)
Q Consensus 323 ~~~~----~~~iv~iSA~~g~gv 341 (1250)
.... ..+++++||++|.+.
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~ 181 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALEG 181 (396)
T ss_pred HHcCCCcCceeEEecchhccccC
Confidence 4443 378999999999874
No 335
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=1.1e-15 Score=165.54 Aligned_cols=158 Identities=22% Similarity=0.225 Sum_probs=109.6
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc-C--eeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-N--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
.+||+++|.+|||||||+|++++.+.... ..|.++.+.....+.+. + ..+.+|||||+.+ +... .
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~-~ 69 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER----------FRSI-T 69 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcchh----------HHHH-H
Confidence 47999999999999999999998664333 33445556555555553 3 3678899999832 3222 2
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
..+++.+|++++|+|.++..+..+.. ++..+.+ ...|+++|+||+|+.+.... .+..+.+.+.++ .++++
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~----~~~~e 145 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG----MKYIE 145 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC----CEEEE
Confidence 35678999999999999864444432 3333332 24678999999999753322 222333333322 78999
Q ss_pred eecCCCCChHHHHHHHHHHHhhc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
+||++|.|++++|+++.+.+...
T Consensus 146 ~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 146 TSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998766543
No 336
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.67 E-value=6.5e-16 Score=162.53 Aligned_cols=155 Identities=16% Similarity=0.160 Sum_probs=104.8
Q ss_pred EEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 185 i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
|+|+|.+|||||||++++.+.... . .+..+..+.....+..++. .+.+|||||+.+.. ..+. ..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~-~~~ 67 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-E-DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD----------RLRP-LSY 67 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-C-CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccc----------hhch-hhc
Confidence 589999999999999999986532 2 2333444444445566665 47789999984332 1122 356
Q ss_pred ccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCccc-hH---------HHHHHHHHHhccCCCC
Q psy17091 263 LEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQ-RK---------IIKNNIKKKLNFLSFA 328 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~~-~~---------~~~~~l~~~l~~~~~~ 328 (1250)
+.+|++++|+|.++..+.++. .++..+.+ .++|+++|+||+|+.+... .. ...++..+.....+..
T Consensus 68 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (174)
T smart00174 68 PDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAV 147 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCc
Confidence 889999999999987555443 24455544 3799999999999975321 00 1112222233333445
Q ss_pred eEEEeecCCCCChHHHHHHHHHHH
Q psy17091 329 MFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 329 ~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
+++++||++|.|++++|+.+.+..
T Consensus 148 ~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 148 KYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHh
Confidence 899999999999999999987654
No 337
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.67 E-value=8.8e-16 Score=158.82 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=101.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
||+++|.+|||||||+++|..... +...|++ ......+.+.+..+.+|||||.. .+...+..++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV--VTTIPTI--GFNVETVTYKNLKFQVWDLGGQT---------SIRPYWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC--cCcCCcc--CcCeEEEEECCEEEEEEECCCCH---------HHHHHHHHHhcCC
Confidence 589999999999999999977653 2333332 23334556678899999999975 3445566778899
Q ss_pred CEEEEEEeCCCCCCh--hhHHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHhcC-C----CCcEecccccCCc
Q psy17091 84 DIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYELG-I----GNPHIISALYGNG 150 (1250)
Q Consensus 84 d~il~v~D~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~~~-~----~~~~~iSA~~g~g 150 (1250)
|++|+|+|+++..+. ....+..+++. .++|+++|+||+|+.+.... .+..... . .+++++||++|.|
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 999999999864221 12334444443 36899999999998754322 1111111 0 1489999999999
Q ss_pred hhHHHHHHHH
Q psy17091 151 IKNFLENILT 160 (1250)
Q Consensus 151 i~~L~~~i~~ 160 (1250)
++++++++.+
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 338
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=9.8e-16 Score=160.28 Aligned_cols=154 Identities=19% Similarity=0.164 Sum_probs=107.0
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
..+|+++|.+|||||||++++++.... ....+.++.+.....+.+++. .+.+|||||+. .+... ..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~-~~ 74 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE----------RFRSI-TQ 74 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHHH-HH
Confidence 589999999999999999999865432 223444455666666777774 46789999983 23222 23
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHH---HHcCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFI---YESGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~---~~~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|++++.+.+.. .++..+ ...+.|+++|+||+|+.+.... ....+.+.+.. ..+++++|
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~----~~~~~~~S 150 (169)
T cd04114 75 SYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQ----DMYYLETS 150 (169)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc----CCeEEEee
Confidence 567899999999999876443322 222222 2347899999999999754332 22333333322 36899999
Q ss_pred cCCCCChHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHV 351 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~ 351 (1250)
|++|.|++++++++.+.
T Consensus 151 a~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 151 AKESDNVEKLFLDLACR 167 (169)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998764
No 339
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.67 E-value=9.3e-16 Score=168.17 Aligned_cols=154 Identities=27% Similarity=0.276 Sum_probs=115.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|+++|.||||||||+|+|++.... +..++++|.++..+.+.+++..+++|||||+.+..... ..+..+...+++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG--KGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEEECCeEEEEEECCCcccccccc--hhHHHHHHHhhccC
Confidence 6999999999999999999988644 78899999999999999999999999999986433111 13445567788999
Q ss_pred CEEEEEEeCCCCCChhh-------------------------------------------HHHHHHHHhc----------
Q psy17091 84 DIIIFIVDGRQGLVEQD-------------------------------------------KLITNFLRKS---------- 110 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~-------------------------------------------~~~~~~l~~~---------- 110 (1250)
|++++|+|+++.....+ ..+..+|+++
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 99999999875321110 1222233221
Q ss_pred -----------------CCCEEEEEeCCCCCCCccchhHHhcCCCCcEecccccCCchhHHHHHHHHhh
Q psy17091 111 -----------------GQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 111 -----------------~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
.+|+++|+||+|+........+.. . ...+++||++|.|++++++.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~-~-~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLAR-Q-PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhc-C-CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 258999999999875544333222 2 2578999999999999999998765
No 340
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=1.5e-15 Score=165.32 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=108.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||++++.+.... ..+.+|..+.....+..++. .+.||||||. +.|.....
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~----------e~~~~~~~ 79 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTAGLETEEQRVELSLWDTSGS----------PYYDNVRP 79 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCC--CCcCCceeeeeEEEEEECCEEEEEEEEeCCCc----------hhhHHHHH
Confidence 4689999999999999999999976432 23333433333344556654 5778999998 33433333
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCcc----------chHHHHHHHHHHhcc
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHN----------QRKIIKNNIKKKLNF 324 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~----------~~~~~~~~l~~~l~~ 324 (1250)
.+++.||++++|+|.++..+.+.. .++..+.+ .+.|+|+|+||+|+.+.. ......++..+....
T Consensus 80 -~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 80 -LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred -HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 467999999999999988666542 45555554 368999999999985320 011112233333333
Q ss_pred CCCCeEEEeecCCCC-ChHHHHHHHHHHH
Q psy17091 325 LSFAMFNFISAIKLN-NINSFMESINHVY 352 (1250)
Q Consensus 325 ~~~~~iv~iSA~~g~-gv~~l~~~i~~~~ 352 (1250)
.+..+++++||++|. ||+++|..+...+
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 343479999999998 8999999987765
No 341
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.67 E-value=7.7e-16 Score=192.07 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=124.1
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.++..|+|+|++|+|||||+++|.+.+.. .+..+|+|.+.....+.+++..+++|||||+.++. .+..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~----------~m~~- 355 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT----------AMRA- 355 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch----------hHHH-
Confidence 35789999999999999999999876543 34678899888888888889999999999995542 2222
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHH--h-c-cCCCCeEEEeec
Q psy17091 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK--L-N-FLSFAMFNFISA 335 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~--l-~-~~~~~~iv~iSA 335 (1250)
..++.+|++++|+|++++...+....+..+...++|+|+|+||+|+...+ ......++... + . +....+++++||
T Consensus 356 rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 356 RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 45678999999999999999999999998888999999999999996432 22333333221 0 0 112368999999
Q ss_pred CCCCChHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINH 350 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~ 350 (1250)
++|.|+++|++++..
T Consensus 435 ktG~GI~eLle~I~~ 449 (787)
T PRK05306 435 KTGEGIDELLEAILL 449 (787)
T ss_pred CCCCCchHHHHhhhh
Confidence 999999999998853
No 342
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.67 E-value=2.1e-15 Score=157.19 Aligned_cols=164 Identities=28% Similarity=0.370 Sum_probs=119.0
Q ss_pred EEEEeCCCChhhHHHHHHhC-CcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHH--HHHHHh
Q psy17091 185 VAIVGKPNVGKSTLINSLLG-ENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSV--IKTLKS 261 (1250)
Q Consensus 185 i~ivG~~nvGKSSLin~l~~-~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~--~~~~~~ 261 (1250)
|+++|.+|+|||||+|+|++ ......++.+++|.+... +.. +..+.+|||||+..........+.+.. ......
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEc-cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999994 334445677777776533 222 338999999998654222212222321 122233
Q ss_pred hccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhc-cCCCCeEEEeecCCCCC
Q psy17091 262 ILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN-FLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~-~~~~~~iv~iSA~~g~g 340 (1250)
...++.+++++|.+...+..+..+.+++...+.|+++|+||+|+.+..........+...+. .....+++++||+++.|
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~ 158 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence 34568899999999887888888888998889999999999999766555545555555544 34557899999999999
Q ss_pred hHHHHHHHHHH
Q psy17091 341 INSFMESINHV 351 (1250)
Q Consensus 341 v~~l~~~i~~~ 351 (1250)
++++++.+.+.
T Consensus 159 ~~~l~~~l~~~ 169 (170)
T cd01876 159 IDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 343
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.67 E-value=9.7e-16 Score=161.03 Aligned_cols=155 Identities=17% Similarity=0.096 Sum_probs=104.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||++++.+.......+..|.+. ..+.+++..+.+|||||.... . .....
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~----------~-~~~~~ 77 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQRAI----------R-PYWRN 77 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCHHH----------H-HHHHH
Confidence 36899999999999999999999876544444444333 345667889999999998322 1 11234
Q ss_pred hhccCcEEEEEecCCCCCCHHH-HHHHHHH----HHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQD-INIANFI----YESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d-~~~~~~~----~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|+++..+..+ ...+..+ ...++|+++++||+|+.+....+++.+.+...-......+++++||
T Consensus 78 ~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 78 YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeEC
Confidence 5688999999999987432222 1122222 2357999999999999765444333333221100111235789999
Q ss_pred CCCCChHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINH 350 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~ 350 (1250)
++|+|++++++++.+
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999864
No 344
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.67 E-value=1.9e-15 Score=157.05 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=105.8
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+++++.... .....+++.+........++. .+.+|||||+.+.. . ....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~-~~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA----------A-IRDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh----------H-HHHH
Confidence 4899999999999999999997543 235566666665555566553 68889999984321 1 1234
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCc-cchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIH-NQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.++.+|++++|+|.+++-+.... .++..+.. .++|+++|+||+|+.+. .........+.+.+. .+++++|
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~S 143 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWG----VPYVETS 143 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC----CeEEEee
Confidence 66889999999999875332222 22222222 47999999999999762 222222222333222 5899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q psy17091 335 AIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (1250)
|++|.|++++++++.+.+.
T Consensus 144 a~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 144 AKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999976653
No 345
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.67 E-value=1.3e-15 Score=167.30 Aligned_cols=159 Identities=25% Similarity=0.265 Sum_probs=120.8
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceec-----------------cCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVIT-----------------YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~-----------------~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 246 (1250)
+|+++|++|+|||||+++|+.....+. ....|+|.......+.+++.++.+|||||+.+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 489999999999999999985422211 1134566667778888999999999999995432
Q ss_pred hhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHh----
Q psy17091 247 FEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL---- 322 (1250)
Q Consensus 247 ~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l---- 322 (1250)
.....+++.+|++++|+|++++...+...+++.+.+.++|+++++||+|+.... ..+..+++++.+
T Consensus 79 ---------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~~~ 148 (237)
T cd04168 79 ---------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSSDI 148 (237)
T ss_pred ---------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCC-HHHHHHHHHHHHCCCe
Confidence 223457788999999999999999999999999989999999999999987421 222222222222
Q ss_pred --------------------------------------------------------ccCCCCeEEEeecCCCCChHHHHH
Q psy17091 323 --------------------------------------------------------NFLSFAMFNFISAIKLNNINSFME 346 (1250)
Q Consensus 323 --------------------------------------------------------~~~~~~~iv~iSA~~g~gv~~l~~ 346 (1250)
..-...|++..||.++.|++.|++
T Consensus 149 ~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~ 228 (237)
T cd04168 149 VPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLE 228 (237)
T ss_pred EEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHH
Confidence 122356899999999999999999
Q ss_pred HHHHHHhh
Q psy17091 347 SINHVYDS 354 (1250)
Q Consensus 347 ~i~~~~~~ 354 (1250)
.+.+.++.
T Consensus 229 ~~~~~~p~ 236 (237)
T cd04168 229 GITKLFPT 236 (237)
T ss_pred HHHHhcCC
Confidence 99887653
No 346
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=1e-15 Score=166.88 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=105.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcce-eccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV-ITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVI 256 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~ 256 (1250)
...+||+++|.+|||||||+++++..+.. ...+..|++. ....+..++ ..+.+|||||+.+. ...
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~ 78 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTAGQEKF----------GGL 78 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeE--EEEEEEECCeEEEEEEEECCCchhh----------hhh
Confidence 34699999999999999999998765432 2223333333 223343433 57888999999433 222
Q ss_pred HHHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEe
Q psy17091 257 KTLKSILEANVVILLLDAQQNISAQDIN-IANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 257 ~~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
. ..+++.+|++|+|+|.++..+.+... ++..+.+ .+.|+++|+||+|+.+.....+.. .+.+ ....+++++
T Consensus 79 ~-~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~----~~~~~~~e~ 152 (219)
T PLN03071 79 R-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHR----KKNLQYYEI 152 (219)
T ss_pred h-HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHH----hcCCEEEEc
Confidence 2 24678999999999999875555433 3344432 468999999999996432211111 2222 234689999
Q ss_pred ecCCCCChHHHHHHHHHHHh
Q psy17091 334 SAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~ 353 (1250)
||++|.|++++|+++.+.+.
T Consensus 153 SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 153 SAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 347
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.67 E-value=1.5e-15 Score=158.94 Aligned_cols=149 Identities=15% Similarity=0.207 Sum_probs=105.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCc-ceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGL-TRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~-T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
.+|+++|.+|||||||++++++.... +..+.++ ..+.....+.+++ ..+.+|||+|... +......+
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~---------~~~~~~~~ 74 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEV---------AILLNDAE 74 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccc---------ccccchhh
Confidence 48999999999999999999987643 1344443 3444445566666 4688999999752 22334455
Q ss_pred hhcCCEEEEEEeCCCCCChhhHHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
++++|++++|+|++++ .....+..|++. .+.|+++|+||+|+.+.... .++. .++...++++||++|.
T Consensus 75 ~~~~d~~llv~d~~~~--~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T cd01892 75 LAACDVACLVYDSSDP--KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred hhcCCEEEEEEeCCCH--HHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence 7899999999999874 222333444443 36899999999998644321 2333 3455457999999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++.+.+.+.
T Consensus 153 ~v~~lf~~l~~~~~ 166 (169)
T cd01892 153 SSNELFTKLATAAQ 166 (169)
T ss_pred cHHHHHHHHHHHhh
Confidence 99999999987653
No 348
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.67 E-value=7.8e-16 Score=164.48 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=105.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+..||+++|.+|||||||++++.+.......+ |.......+.+++..+.+|||||+.+ +. .....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~----T~~~~~~~i~~~~~~~~l~D~~G~~~----------~~-~~~~~ 82 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTIGNIKFKTFDLGGHEQ----------AR-RLWKD 82 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccCcceEEEEECCEEEEEEECCCCHH----------HH-HHHHH
Confidence 46899999999999999999999866432222 33334456777888999999999832 21 11235
Q ss_pred hhccCcEEEEEecCCCCCCHH-HHHHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHh-----------cc
Q psy17091 261 SILEANVVILLLDAQQNISAQ-DINIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL-----------NF 324 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~-d~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l-----------~~ 324 (1250)
+++.+|++++|+|+++..+.. ....+..+.+ .+.|+++|+||+|+......++..+.+...- ..
T Consensus 83 ~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T cd00879 83 YFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSG 162 (190)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccC
Confidence 678999999999998753221 2223333322 4699999999999965333333332222100 00
Q ss_pred CCCCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 325 LSFAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 325 ~~~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
....+++++||++|+|++++|+++.+.
T Consensus 163 ~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 163 IRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 122468999999999999999999654
No 349
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=1.2e-15 Score=159.71 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=105.3
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCccee-eEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRD-SIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~-~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+.+||+++|.+|||||||++++++.... +..+.+|+.+ .....+.+++ ..+.+|||+|..... ..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----------~~- 70 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI----------LL- 70 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc----------cc-
Confidence 4689999999999999999999987643 2344455433 3334566666 457789999985432 11
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH-cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE-SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
...+++.+|++++|+|++++.+.+.. .++..+.. .++|+++|+||+|+.+.... ....+++.+.++ ..+++++|
T Consensus 71 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~S 147 (169)
T cd01892 71 NDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG---LPPPLHFS 147 (169)
T ss_pred chhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcC---CCCCEEEE
Confidence 12356899999999999886333222 22332211 36999999999999643211 111233333332 23468999
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHVY 352 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (1250)
|++|.|++++|+.+.+.+
T Consensus 148 a~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 148 SKLGDSSNELFTKLATAA 165 (169)
T ss_pred eccCccHHHHHHHHHHHh
Confidence 999999999999987764
No 350
>PLN03110 Rab GTPase; Provisional
Probab=99.66 E-value=1.6e-15 Score=165.08 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=112.7
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||+++|++..... ...+.+..+.....+.+++. .+.||||||.. ++... .
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~----------~~~~~-~ 78 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----------RYRAI-T 78 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcH----------HHHHH-H
Confidence 45899999999999999999999865432 23454555655566666664 77889999983 33322 2
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
..+++.+|++++|+|+++..+.+... ++..+.. .+.|+++|+||+|+...... .+..+.+... ...+++++
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~----~~~~~~e~ 154 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK----EGLSFLET 154 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHH----cCCEEEEE
Confidence 35678999999999999875554432 4444443 47999999999998654322 2233333332 24789999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||++|.|++++|+.+.+.+.+
T Consensus 155 SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 155 SALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999776644
No 351
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.66 E-value=7.4e-16 Score=160.62 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=103.9
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
||+++|.+|||||||+++++.... ...+++++.......+..++. .+.+|||||+.+.. ......+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD----------TEQLERS 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc----------cchHHHH
Confidence 589999999999999999986432 334555654444455556665 47789999996421 0112345
Q ss_pred hccCcEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEEee
Q psy17091 262 ILEANVVILLLDAQQNISAQDIN-IANFIYE-----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~-~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
++.+|++++|+|++++.+.+... +...+.+ .+.|+++|+||+|+.+..... +....+.+.+ + .+++++|
T Consensus 69 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---~-~~~~e~S 144 (165)
T cd04146 69 IRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL---G-CLFFEVS 144 (165)
T ss_pred HHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc---C-CEEEEeC
Confidence 67899999999999875544432 3333333 379999999999986432221 1222222222 2 6899999
Q ss_pred cCCC-CChHHHHHHHHHHH
Q psy17091 335 AIKL-NNINSFMESINHVY 352 (1250)
Q Consensus 335 A~~g-~gv~~l~~~i~~~~ 352 (1250)
|++| .|++++|+.+.+.+
T Consensus 145 a~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 145 AAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCCchhHHHHHHHHHHHH
Confidence 9999 59999999987654
No 352
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.66 E-value=2.5e-15 Score=161.71 Aligned_cols=157 Identities=20% Similarity=0.147 Sum_probs=107.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||++++++.... ....|.++.+.....+.+++. .+.+|||||+.. +... .
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~-~ 72 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER----------FRTI-T 72 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCEEEEEEEEeCCCchh----------HHHH-H
Confidence 3689999999999999999999976532 223333334444455555553 677899999833 3222 2
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE--SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~--~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
..+++.+|++++|+|+++..+.++.. ++..+.. ...|+++|+||+|+.+.... .+....+... . ..+++++|
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~---~-~~~~~e~S 148 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQ---M-GISLFETS 148 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHH---c-CCEEEEEE
Confidence 35678899999999999875544432 3444433 35899999999999754322 1222222222 2 26899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q psy17091 335 AIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (1250)
|++|.|++++|+++.+.+.
T Consensus 149 a~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 149 AKENINVEEMFNCITELVL 167 (199)
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999977654
No 353
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.66 E-value=2.4e-15 Score=161.81 Aligned_cols=151 Identities=21% Similarity=0.189 Sum_probs=107.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||++++.+.... ....|+++.+.....+.+++ ..+.||||||.. .+......++
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~~ 76 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE---------RFRTITSTYY 76 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCEEEEEEEEeCCCch---------hHHHHHHHHh
Confidence 58999999999999999999987632 23344444555555556665 478899999964 3445566778
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCch
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~gi 151 (1250)
..+|++++|+|+++..+... ..+.+.++. ...|+++|+||+|+.+.... .++. ..+ ..++++||++|.|+
T Consensus 77 ~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi 155 (199)
T cd04110 77 RGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-ISLFETSAKENINV 155 (199)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCCCcCH
Confidence 89999999999987432221 123333333 34789999999999765433 2222 233 36899999999999
Q ss_pred hHHHHHHHHhhCC
Q psy17091 152 KNFLENILTIELP 164 (1250)
Q Consensus 152 ~~L~~~i~~~l~~ 164 (1250)
+++++.+.+.+..
T Consensus 156 ~~lf~~l~~~~~~ 168 (199)
T cd04110 156 EEMFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 354
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=2.2e-15 Score=156.26 Aligned_cols=147 Identities=18% Similarity=0.133 Sum_probs=104.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|.+|||||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||+. .+.......++
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~~~ 71 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFK-EDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE---------RFRSVTRSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEECcchH---------HHHHhHHHHhc
Confidence 7999999999999999999987643 33344444455545555555 468899999964 33445566788
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHH---hcCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCch
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLR---KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~---~~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~gi 151 (1250)
.+|++++|+|.+++.+... ..+...++ ..+.|+++|+||+|+...... ..+. ..+ -.++.+||+++.|+
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 150 (161)
T cd04113 72 GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENG-LLFLETSALTGENV 150 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC-CEEEEEECCCCCCH
Confidence 9999999999987433222 12222222 246899999999999754332 2222 344 37899999999999
Q ss_pred hHHHHHHHHh
Q psy17091 152 KNFLENILTI 161 (1250)
Q Consensus 152 ~~L~~~i~~~ 161 (1250)
+++++.+.+.
T Consensus 151 ~~~~~~~~~~ 160 (161)
T cd04113 151 EEAFLKCARS 160 (161)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 355
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.66 E-value=1.3e-15 Score=162.06 Aligned_cols=140 Identities=20% Similarity=0.205 Sum_probs=110.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCC------Cc---------ccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSR------DA---------LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKG 67 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~------~~---------~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 67 (1250)
.+|+++|++|+|||||+++|++.. .. ......|+|.+.....+++++.++.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA------ 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH------
Confidence 479999999999999999998641 00 011257889998888888888999999999964
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCccc--------hhHH-hcCC
Q psy17091 68 IMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS--------LDFY-ELGI 137 (1250)
Q Consensus 68 ~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~D~~~~~~~--------~~~~-~~~~ 137 (1250)
.+...+..++..+|++++|+|+..+....+.++..++...++| +++|+||+|+...... .+++ ..++
T Consensus 77 ---~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~ 153 (195)
T cd01884 77 ---DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF 153 (195)
T ss_pred ---HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 5666778888999999999999998888888888999988987 7799999998643322 1111 2343
Q ss_pred ----CCcEecccccCCch
Q psy17091 138 ----GNPHIISALYGNGI 151 (1250)
Q Consensus 138 ----~~~~~iSA~~g~gi 151 (1250)
-+++++||++|.|+
T Consensus 154 ~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 154 DGDNTPIVRGSALKALEG 171 (195)
T ss_pred cccCCeEEEeeCccccCC
Confidence 35799999999985
No 356
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.66 E-value=5.6e-16 Score=157.16 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=93.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.||+++|++|||||||+|+|++.... ..+ |. .+.+.+ .+|||||..... .........++++
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~~~---~~~--t~-----~~~~~~---~~iDt~G~~~~~-----~~~~~~~~~~~~~ 62 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEEIL---YKK--TQ-----AVEYND---GAIDTPGEYVEN-----RRLYSALIVTAAD 62 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCccc---ccc--ce-----eEEEcC---eeecCchhhhhh-----HHHHHHHHHHhhc
Confidence 37999999999999999999987632 222 21 123333 689999973211 1222223345899
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCchhHHHHH
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi~~L~~~ 157 (1250)
+|++++|+|++++.+.....+... ...|+++|+||+|+.+.... .++. ..+..+++++||++|.|++++++.
T Consensus 63 ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 63 ADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence 999999999988766555444433 34699999999998653222 2333 334446899999999999999988
Q ss_pred HH
Q psy17091 158 IL 159 (1250)
Q Consensus 158 i~ 159 (1250)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 357
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.66 E-value=2.8e-15 Score=157.09 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=107.3
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||++++++.... ....+..+.+.....+.+++ ..+.+|||||+. .+......
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 70 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP-ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE----------RFRKSMVQ 70 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CccccceeEEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhhHH
Confidence 478999999999999999999875432 22333344444445566666 467889999983 22211123
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
.+++.+|++++|+|++++.+.++.. ++..+.. .+.|+++|+||+|+...... .+..+.+.+.. ..+++++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~e~ 146 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAH----SMPLFET 146 (170)
T ss_pred HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHc----CCcEEEE
Confidence 4568999999999999876665554 3333433 35899999999998754322 22233333322 3689999
Q ss_pred ecCC---CCChHHHHHHHHHHH
Q psy17091 334 SAIK---LNNINSFMESINHVY 352 (1250)
Q Consensus 334 SA~~---g~gv~~l~~~i~~~~ 352 (1250)
||++ +.+++++|..+.+.+
T Consensus 147 Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 147 SAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred eccCCcCCCCHHHHHHHHHHHh
Confidence 9999 889999998887654
No 358
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.66 E-value=2.7e-15 Score=155.64 Aligned_cols=145 Identities=21% Similarity=0.217 Sum_probs=104.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+++|.+|||||||+++++++... ....|+++.+.....+..++ ..+.+|||||.. ++......++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~---------~~~~~~~~~~~ 71 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE---------RYQTITKQYYR 71 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH---------hHHhhHHHHhc
Confidence 7999999999999999999987643 23345555555555666666 467899999965 33344556788
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHH---h---cCCCEEEEEeCCCCCCCccc-----hhHHh-cCCCCcEecccccCC
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLR---K---SGQPIVLVINKSENINSSIS-----LDFYE-LGIGNPHIISALYGN 149 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~---~---~~~p~ilv~NK~D~~~~~~~-----~~~~~-~~~~~~~~iSA~~g~ 149 (1250)
.+|++++|+|.++.- ....+.+|+. . .+.|+++|+||+|+.+.... ..+.+ .+ .+++++||++|.
T Consensus 72 ~~~~~i~v~d~~~~~--sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~ 148 (161)
T cd04117 72 RAQGIFLVYDISSER--SYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNS 148 (161)
T ss_pred CCcEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 999999999998742 2223334333 2 25799999999998755433 22222 34 368999999999
Q ss_pred chhHHHHHHHHh
Q psy17091 150 GIKNFLENILTI 161 (1250)
Q Consensus 150 gi~~L~~~i~~~ 161 (1250)
|++++++++.+.
T Consensus 149 ~v~~~f~~l~~~ 160 (161)
T cd04117 149 NIKESFTRLTEL 160 (161)
T ss_pred CHHHHHHHHHhh
Confidence 999999998753
No 359
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.66 E-value=2.4e-15 Score=156.51 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=103.1
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcc-eeeEEEEEEEc---CeeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTT-RDSIKSLFEYN---NKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT-~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+||+++|.+|||||||++++..........+..|+ .+.....+..+ ...+.+|||||+ +.+... .
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~-~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ----------ELYSDM-V 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH----------HHHHHH-H
Confidence 58999999999999999999864222222333333 34433334443 257888999997 222222 2
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEeccccCCccchHH-HHHHHHHHhccCCCCeEEEee
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRKI-IKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~iv~iS 334 (1250)
..+++.+|++++|+|.++..+..+. .++..+.. .+.|+++|+||+|+.+...... ..+.+.... ..+++++|
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~S 145 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQAN----QLKFFKTS 145 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHc----CCeEEEEe
Confidence 3567899999999999886443332 34444443 3699999999999975433221 112222222 36899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHVY 352 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (1250)
|++|.|++++++.+.+.+
T Consensus 146 a~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 146 ALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCCChHHHHHHHHHHh
Confidence 999999999999987653
No 360
>PRK00049 elongation factor Tu; Reviewed
Probab=99.66 E-value=1.2e-15 Score=180.60 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=117.1
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCc------cee---------ccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGEN------RVI---------TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~------~~~---------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
.+.++|+++|++++|||||+++|++.. ... ....+|+|.+.....+..++.++.++||||+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~--- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH---
Confidence 457999999999999999999999621 111 11267999999877787788899999999983
Q ss_pred cchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEE-EEEeccccCCccc-hHHHHHHHHHHh
Q psy17091 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLI-VCVNKWDSIIHNQ-RKIIKNNIKKKL 322 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~i-iv~NK~Dl~~~~~-~~~~~~~l~~~l 322 (1250)
.|. ..+...+..+|++++|+|+..++..++..++..+...++|.+ +++||+|+.+... .+...++++..+
T Consensus 87 -------~f~-~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l 158 (396)
T PRK00049 87 -------DYV-KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred -------HHH-HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence 232 233456789999999999999999999999999999999986 5899999985333 333445666666
Q ss_pred ccCC----CCeEEEeecCCCCC
Q psy17091 323 NFLS----FAMFNFISAIKLNN 340 (1250)
Q Consensus 323 ~~~~----~~~iv~iSA~~g~g 340 (1250)
...+ ..|++++||++|.+
T Consensus 159 ~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 159 SKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HhcCCCccCCcEEEeecccccC
Confidence 5443 37999999999865
No 361
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.66 E-value=1.3e-15 Score=156.91 Aligned_cols=151 Identities=21% Similarity=0.182 Sum_probs=103.3
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc--CeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+|++.+...... ..+.++.+.....+..+ ...+.+|||||+. .+.. ....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~-~~~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE----------RFRS-ITPS 68 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChH----------HHHH-HHHH
Confidence 4899999999999999999998765444 23333333333444443 4678899999983 2221 2345
Q ss_pred hhccCcEEEEEecCCCCCCHHH-HHHHHHHHHc---CCcEEEEEeccccC-CccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQD-INIANFIYES---GRSLIVCVNKWDSI-IHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d-~~~~~~~~~~---~~p~iiv~NK~Dl~-~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
.++.+|++++|+|+++..+..+ ..++..+... +.|+++|+||+|+. +.....+..+.+... ...+++++||
T Consensus 69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~sa 144 (159)
T cd00154 69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE----NGLLFFETSA 144 (159)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH----cCCeEEEEec
Confidence 6788999999999987533222 2345455553 49999999999996 222222222222222 2478999999
Q ss_pred CCCCChHHHHHHHH
Q psy17091 336 IKLNNINSFMESIN 349 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~ 349 (1250)
++|.|++++++++.
T Consensus 145 ~~~~~i~~~~~~i~ 158 (159)
T cd00154 145 KTGENVEELFQSLA 158 (159)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999874
No 362
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.66 E-value=8.8e-16 Score=160.87 Aligned_cols=155 Identities=18% Similarity=0.146 Sum_probs=104.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+|+|++.... . ...++..+........++ ..+.+|||||+.+.. ... ..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~----------~~~-~~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-T-EYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD----------RLR-PL 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-C-CCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc----------ccc-hh
Confidence 58999999999999999999986542 2 233333444444445554 468889999985432 111 13
Q ss_pred hhccCcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEeccccCCccchHH---------HHHHHHHHhccCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRKI---------IKNNIKKKLNFLSF 327 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~---------~~~~l~~~l~~~~~ 327 (1250)
.++.+|++++|+|+++..+.... .++..+... ++|+++|+||+|+.+...... ..++..+.....+.
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 44789999999999886443332 234444433 599999999999986543211 12222333333344
Q ss_pred CeEEEeecCCCCChHHHHHHHHH
Q psy17091 328 AMFNFISAIKLNNINSFMESINH 350 (1250)
Q Consensus 328 ~~iv~iSA~~g~gv~~l~~~i~~ 350 (1250)
.+++++||++|.|++++++++.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 58999999999999999998864
No 363
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.66 E-value=8.5e-16 Score=171.52 Aligned_cols=143 Identities=18% Similarity=0.137 Sum_probs=116.4
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcce-----ec------------cCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRV-----IT------------YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~-----~~------------~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 246 (1250)
+|+++|++|+|||||+|+|+..... .+ ....|+|.+.....+.|++.++++|||||+.++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 4899999999999999999732111 11 125689999999999999999999999998432
Q ss_pred hhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCC
Q psy17091 247 FEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLS 326 (1250)
Q Consensus 247 ~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~ 326 (1250)
. .....+++.+|++++|+|++.++..++..+++.+.+.++|+++++||+|+.+. ......+++++.++...
T Consensus 78 -------~-~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a-~~~~~~~~l~~~l~~~~ 148 (270)
T cd01886 78 -------T-IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA-DFFRVVEQIREKLGANP 148 (270)
T ss_pred -------H-HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHhCCCc
Confidence 1 23456778899999999999999999999999999999999999999998753 35566778888887666
Q ss_pred CCeEEEeecCCC
Q psy17091 327 FAMFNFISAIKL 338 (1250)
Q Consensus 327 ~~~iv~iSA~~g 338 (1250)
...++++||..+
T Consensus 149 ~~~~~Pisa~~~ 160 (270)
T cd01886 149 VPLQLPIGEEDD 160 (270)
T ss_pred eEEEeccccCCC
Confidence 667899999854
No 364
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.66 E-value=1.5e-15 Score=180.16 Aligned_cols=149 Identities=18% Similarity=0.244 Sum_probs=115.1
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCC------ccee---------ccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGE------NRVI---------TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~------~~~~---------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
++.++|+++|++++|||||+++|++. .... ....+|+|.+.....+..++.++.+|||||+.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~--- 86 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH---
Confidence 45799999999999999999999842 1111 11247999999887777778899999999993
Q ss_pred cchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEE-EEEeccccCCccch-HHHHHHHHHHh
Q psy17091 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLI-VCVNKWDSIIHNQR-KIIKNNIKKKL 322 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~i-iv~NK~Dl~~~~~~-~~~~~~l~~~l 322 (1250)
.|. ......+..+|++++|+|++++...++.+.+..+...++|.+ +|+||||+.+.... +...++++..+
T Consensus 87 -------~f~-~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l 158 (394)
T TIGR00485 87 -------DYV-KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred -------HHH-HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence 332 233456678999999999999999999999999999999976 58999999864332 33344566666
Q ss_pred ccCCC----CeEEEeecCCCC
Q psy17091 323 NFLSF----AMFNFISAIKLN 339 (1250)
Q Consensus 323 ~~~~~----~~iv~iSA~~g~ 339 (1250)
....+ +|++++||++|.
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 159 SEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HhcCCCccCccEEECcccccc
Confidence 54433 789999999985
No 365
>KOG0098|consensus
Probab=99.66 E-value=1.3e-15 Score=150.42 Aligned_cols=150 Identities=22% Similarity=0.164 Sum_probs=115.8
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
+.|++++|..|||||+|+-+++.++...+.+ .+...+.....+.++++ .+++|||+|++ .++..+..+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe---------~frsv~~sy 75 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQE---------SFRSVTRSY 75 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcH---------HHHHHHHHH
Confidence 4689999999999999999999988543433 34455666666777765 78899999976 778888999
Q ss_pred hhcCCEEEEEEeCCCCCChhhHHHHHHHHh------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEeccccc
Q psy17091 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~~~~~~~l~~------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~ 147 (1250)
++.|-++|+|+|.+++ .....+..||.. .+..+++++||+|+...+.+ ..|. +.|+ ....+||++
T Consensus 76 Yr~a~GalLVydit~r--~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmETSakt 152 (216)
T KOG0098|consen 76 YRGAAGALLVYDITRR--ESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFMETSAKT 152 (216)
T ss_pred hccCcceEEEEEccch--hhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc-eeehhhhhh
Confidence 9999999999999874 333345555553 45679999999999877665 2333 4555 567999999
Q ss_pred CCchhHHHHHHHHhhCC
Q psy17091 148 GNGIKNFLENILTIELP 164 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~ 164 (1250)
+.|+++.|......+..
T Consensus 153 ~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 153 AENVEEAFINTAKEIYR 169 (216)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999988766543
No 366
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.66 E-value=1.7e-15 Score=166.12 Aligned_cols=153 Identities=24% Similarity=0.207 Sum_probs=111.5
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
+|+++|.||||||||+|+|++.. ..++.++++|.++..+.+.+++.++++|||||+.+...... ......+..++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~----~~~~~~l~~~~ 76 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK----GRGRQVIAVAR 76 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch----hHHHHHHHhhc
Confidence 68999999999999999999876 44568999999998888999999999999999865431111 11223456789
Q ss_pred cCcEEEEEecCCCCCCHHHHHHHHHH-------------------------------------------H-H--------
Q psy17091 264 EANVVILLLDAQQNISAQDINIANFI-------------------------------------------Y-E-------- 291 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~d~~~~~~~-------------------------------------------~-~-------- 291 (1250)
.+|++++|+|+++... +-..+.+.+ + +
T Consensus 77 ~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v 155 (233)
T cd01896 77 TADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADV 155 (233)
T ss_pred cCCEEEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEE
Confidence 9999999999976421 111111111 1 0
Q ss_pred -------------------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHHHH
Q psy17091 292 -------------------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 292 -------------------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
..+|+++|+||+|+.+..+.. .... ..+++++||++|.|++++++.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~-------~~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 156 LIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD-------LLAR---QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH-------HHhc---CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 126899999999997643322 1111 24689999999999999999987754
No 367
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=1.7e-15 Score=160.35 Aligned_cols=148 Identities=17% Similarity=0.217 Sum_probs=103.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||++++..... ....|++. .....+...+..+.+|||||.. ++...+..+++.
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~--~~~~~T~~--~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~~~~ 84 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEV--VTTIPTIG--FNVETVEYKNLKFTMWDVGGQD---------KLRPLWRHYYQN 84 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc--cccCCccc--cceEEEEECCEEEEEEECCCCH---------hHHHHHHHHhcC
Confidence 5899999999999999999976543 23334333 3334566678899999999975 455566778899
Q ss_pred CCEEEEEEeCCCCC--ChhhHHHHHHHHh---cCCCEEEEEeCCCCCCCccchhH-HhcCCC-------CcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGL--VEQDKLITNFLRK---SGQPIVLVINKSENINSSISLDF-YELGIG-------NPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~--~~~~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~-~~~~~~-------~~~~iSA~~g~ 149 (1250)
+|++|||+|+++.. ......+.+++.. .+.|+++|+||+|+.+.....+. ..++.. .++++||++|.
T Consensus 85 ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 85 TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 99999999997632 2222334444432 35799999999998654322221 122221 23578999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++++.+.+.
T Consensus 165 gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 165 GLYEGLDWLSANIK 178 (182)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987654
No 368
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.66 E-value=1.4e-15 Score=161.34 Aligned_cols=151 Identities=23% Similarity=0.279 Sum_probs=102.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEE---CCEEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI---GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
.+|+++|.+|||||||++++..... +...|+.+.+.....+.+ .+..+.+|||||.. ++...+..+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~ 72 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF--VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE---------KLRPLWKSY 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc--CCcCCccccceeEEEeeccCCCceEEEEEECCCcH---------hHHHHHHHH
Confidence 4899999999999999999987653 334454433433333332 45789999999964 344556667
Q ss_pred hhcCCEEEEEEeCCCCCChhh--HH---HHHHHHhcCCCEEEEEeCCCCCCCccc---hhHHh---cCC---CCcEeccc
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD--KL---ITNFLRKSGQPIVLVINKSENINSSIS---LDFYE---LGI---GNPHIISA 145 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~--~~---~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~~---~~~---~~~~~iSA 145 (1250)
++.+|++++|+|+++..+... .. +.++....++|+++|+||+|+...... ..+.. .+. .+++++||
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 152 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACA 152 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeec
Confidence 889999999999987422111 11 112222357899999999998643221 12221 111 13679999
Q ss_pred ccCCchhHHHHHHHHhhCC
Q psy17091 146 LYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 146 ~~g~gi~~L~~~i~~~l~~ 164 (1250)
++|.|++++++++.+.+.+
T Consensus 153 ~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 153 IIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 9999999999999887743
No 369
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.66 E-value=1.4e-15 Score=187.88 Aligned_cols=159 Identities=26% Similarity=0.360 Sum_probs=120.8
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc----CeeEEEEecCCCCCCCcchhhHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN----NKKYILIDTAGIRRRNKTFEVIEKFSV 255 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~e~~~~ 255 (1250)
.++.+|+|+|++|+|||||+++|.+..... +..+|+|.+.....+.+. +..+++|||||+ +.|..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh----------e~F~~ 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH----------EAFSS 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcH----------HHHHH
Confidence 356899999999999999999999765433 456788877655554442 478999999999 44443
Q ss_pred HHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHH--h-c-cCCCCeEE
Q psy17091 256 IKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK--L-N-FLSFAMFN 331 (1250)
Q Consensus 256 ~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~--l-~-~~~~~~iv 331 (1250)
++. .+++.+|++++|+|++++...+....+..+...++|+|+|+||+|+.+.. .....+++... + . .....|++
T Consensus 311 mr~-rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv 388 (742)
T CHL00189 311 MRS-RGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMI 388 (742)
T ss_pred HHH-HHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEE
Confidence 333 56688999999999999999999999998888999999999999997532 23333333221 0 1 11246899
Q ss_pred EeecCCCCChHHHHHHHHHH
Q psy17091 332 FISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 332 ~iSA~~g~gv~~l~~~i~~~ 351 (1250)
++||++|.|+++|++.+...
T Consensus 389 ~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 389 PISASQGTNIDKLLETILLL 408 (742)
T ss_pred EEECCCCCCHHHHHHhhhhh
Confidence 99999999999999988554
No 370
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.66 E-value=1.8e-15 Score=186.27 Aligned_cols=158 Identities=25% Similarity=0.263 Sum_probs=119.2
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceec--------------cCCCCcceeeEEEEEEEc---C--eeEEEEecCCCCCC
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVIT--------------YDTPGTTRDSIKSLFEYN---N--KKYILIDTAGIRRR 243 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~--------------~~~~gtT~~~~~~~~~~~---~--~~~~liDTpG~~~~ 243 (1250)
-+|+|+|++|+|||||+++|+.....+. ....|+|.+.....+.|. + ..+++|||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 4799999999999999999986432111 123588888776666663 3 57899999999543
Q ss_pred CcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhc
Q psy17091 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323 (1250)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~ 323 (1250)
. .....+++.||++++|+|++++.+.++...+..+.+.++|+++|+||+|+.+.. .....+++.+.++
T Consensus 84 ----------~-~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg 151 (595)
T TIGR01393 84 ----------S-YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PERVKKEIEEVIG 151 (595)
T ss_pred ----------H-HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHHHHHhC
Confidence 2 123456789999999999999999998887777778899999999999986432 3334455555544
Q ss_pred cCCCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 324 FLSFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 324 ~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
....+++++||++|.|++++++++.+.++
T Consensus 152 -~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 152 -LDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred -CCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 22236899999999999999999876653
No 371
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.66 E-value=3e-15 Score=156.81 Aligned_cols=149 Identities=18% Similarity=0.141 Sum_probs=104.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||++++++.+.. ....+.++.+.....+.+++. .+.+|||||.. ++......++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~ 75 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE---------RFRSLRTPFY 75 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH---------HHHHhHHHHh
Confidence 48999999999999999999977643 233455555555555666664 67899999964 4445566678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEeccccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK-------SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~-------~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~ 147 (1250)
+.+|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+...... .++. ..+...++++||++
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 76 RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 89999999999886432221 122222211 34799999999998643222 2232 34444689999999
Q ss_pred CCchhHHHHHHHHh
Q psy17091 148 GNGIKNFLENILTI 161 (1250)
Q Consensus 148 g~gi~~L~~~i~~~ 161 (1250)
|.|+.++++.+.+.
T Consensus 156 ~~~v~~~~~~~~~~ 169 (170)
T cd04116 156 ATNVAAAFEEAVRR 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 372
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=2.9e-15 Score=159.76 Aligned_cols=149 Identities=20% Similarity=0.224 Sum_probs=107.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|++++.... ....|+++.+.....+.+++. .+.+|||||.. .+......++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~---------~~~~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS-ESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE---------RFRSLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH---------HHHhhHHHHc
Confidence 48999999999999999999987643 223455555555555666554 67899999964 3444566778
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHH---Hh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFL---RK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l---~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g 148 (1250)
+++|++++|+|.+++. ....+..|+ .. ...|+++|+||+|+.+.... ..+. ..++ +++++||++|
T Consensus 71 ~~~d~iilv~d~~~~~--s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~ 147 (188)
T cd04125 71 RGAHGYLLVYDVTDQE--SFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQS 147 (188)
T ss_pred cCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 8999999999998742 223333333 32 24789999999998754432 1222 3344 7899999999
Q ss_pred CchhHHHHHHHHhhCC
Q psy17091 149 NGIKNFLENILTIELP 164 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~ 164 (1250)
.|++++++.+.+.+..
T Consensus 148 ~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 148 INVEEAFILLVKLIIK 163 (188)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887654
No 373
>PTZ00369 Ras-like protein; Provisional
Probab=99.66 E-value=1.4e-15 Score=162.34 Aligned_cols=151 Identities=19% Similarity=0.169 Sum_probs=104.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||++++.+... ...+.+++.+.....+.+++. .+.+|||||... +......++
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~l~~~~~ 74 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHF--IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE---------YSAMRDQYM 74 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc---------chhhHHHHh
Confidence 6999999999999999999998753 223333333333444455554 577899999763 333455578
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
+.+|++++|+|.++..+... ..+...+.+ .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.
T Consensus 75 ~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~Sak~~~ 153 (189)
T PTZ00369 75 RTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI-PFLETSAKQRV 153 (189)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC-EEEEeeCCCCC
Confidence 89999999999987433221 223333322 36799999999998654322 1222 2333 67999999999
Q ss_pred chhHHHHHHHHhhCCc
Q psy17091 150 GIKNFLENILTIELPY 165 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~~ 165 (1250)
|++++++++.+.+...
T Consensus 154 gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 154 NVDEAFYELVREIRKY 169 (189)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998776543
No 374
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.66 E-value=3.1e-15 Score=156.86 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=106.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+++|.+|||||||+|+|++.... ....+..+.+.....+.+.+. .+.+|||||.. .+......+++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~~ 71 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE---------RFQSLGVAFYR 71 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChH---------HHHhHHHHHhc
Confidence 7999999999999999999987643 333444555555556666664 56799999964 33445566788
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHH-HHHh------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEeccccc
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITN-FLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~-~l~~------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~ 147 (1250)
.+|++|+|+|+.++.+... ..+.+ ++.. .++|+++|+||+|+..+... ..+. ..+..+++++||++
T Consensus 72 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 151 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKE 151 (172)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCC
Confidence 9999999999986432211 12222 2222 26899999999999743322 2222 33445789999999
Q ss_pred CCchhHHHHHHHHhhCC
Q psy17091 148 GNGIKNFLENILTIELP 164 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~ 164 (1250)
|.|++++++.+.+.+.+
T Consensus 152 ~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 152 AINVEQAFETIARKALE 168 (172)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999876543
No 375
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.65 E-value=1.5e-15 Score=159.77 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=106.6
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||++++.+.+. ...+.+++.+.....+..++.. +.+|||||..+... .+ ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~-~~ 67 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR----------LR-PL 67 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----------cc-cc
Confidence 5899999999999999999997653 2234445555544556666654 56899999854321 11 13
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH--HHHHHHH--cCCcEEEEEeccccCCccchH----------HHHHHHHHHhccCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN--IANFIYE--SGRSLIVCVNKWDSIIHNQRK----------IIKNNIKKKLNFLS 326 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~--~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~----------~~~~~l~~~l~~~~ 326 (1250)
.++.+|++++|+|.++.-+.++.. +...+.. .++|+++|+||+|+.+..... ...++........+
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 567899999999999875554442 3444433 579999999999986432111 01122223333344
Q ss_pred CCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 327 FAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 327 ~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
..+++++||++|.|++++|+.+.+.
T Consensus 148 ~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred CCEEEEecCCcCCCHHHHHHHHHHH
Confidence 5689999999999999999988664
No 376
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=3.2e-15 Score=159.44 Aligned_cols=156 Identities=21% Similarity=0.155 Sum_probs=105.6
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||++++++..... ...+.++.+.....+..++. .+.+|||||.. .+.. ....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~----------~~~~-~~~~ 68 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE----------RFRS-LNNS 68 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHh-hHHH
Confidence 489999999999999999999866432 12333334444445555554 56789999973 3322 2235
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
.++.+|++++|+|+++..+..+.. ++..+.. .+.|+++|+||+|+.+.... ....+.+.+.. ..+++++||
T Consensus 69 ~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~evSa 144 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSL----NIPFFETSA 144 (188)
T ss_pred HccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHc----CCeEEEEeC
Confidence 678999999999998864433332 3333333 35799999999999753322 12222232222 358999999
Q ss_pred CCCCChHHHHHHHHHHHhh
Q psy17091 336 IKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (1250)
++|.|++++|+++.+.+..
T Consensus 145 ~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 145 KQSINVEEAFILLVKLIIK 163 (188)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999998877643
No 377
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.65 E-value=3.9e-15 Score=154.27 Aligned_cols=153 Identities=20% Similarity=0.181 Sum_probs=103.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+|++++..... ...+.++.+.....+.+.+. .+.+|||||.. .+..... .
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~-~ 68 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE----------RYHALGP-I 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchH----------HHHHhhH-H
Confidence 489999999999999999999765432 23334444444445555554 57889999972 2222222 3
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
.++.+|++++|+|++++.+.++.. ++..+.. .++|+++|+||+|+...... .+..+++.+.. ..+++++||
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~s~ 144 (162)
T cd04123 69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSV----GAKHFETSA 144 (162)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc----CCEEEEEeC
Confidence 567899999999998875444332 2233332 36899999999999753322 11222222222 367899999
Q ss_pred CCCCChHHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINHV 351 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~ 351 (1250)
++|.|++++++++...
T Consensus 145 ~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 145 KTGKGIEELFLSLAKR 160 (162)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998664
No 378
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.65 E-value=1.8e-15 Score=157.17 Aligned_cols=149 Identities=21% Similarity=0.147 Sum_probs=103.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|++|||||||+|++++.+... ...+....+.....+.+++ ..+.+|||||.. ++......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 71 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE---------RYRSLAPMYY 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCchH---------HHHHHHHHHh
Confidence 489999999999999999999887432 2233333333344455554 578899999954 3344455677
Q ss_pred hcCCEEEEEEeCCCCCChh-hHHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQ-DKLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~-~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++++|+|+++..+-. ...+.+.+.. .+.|+++|+||+|+...... ..+. ..+. .++++||++|.|
T Consensus 72 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 150 (163)
T cd01860 72 RGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAKTGEN 150 (163)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCC-EEEEEECCCCCC
Confidence 8999999999998632211 1233333333 34789999999998743322 2222 3343 689999999999
Q ss_pred hhHHHHHHHHhh
Q psy17091 151 IKNFLENILTIE 162 (1250)
Q Consensus 151 i~~L~~~i~~~l 162 (1250)
+.++++.+.+.+
T Consensus 151 v~~l~~~l~~~l 162 (163)
T cd01860 151 VNELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 379
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.65 E-value=2.7e-15 Score=157.12 Aligned_cols=149 Identities=19% Similarity=0.157 Sum_probs=104.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|.+|||||||+++++++... ....|.+..+.....+..++ ..+.+|||||.+ ++......+++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE---------RFKCIASTYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH---------HHHhhHHHHhc
Confidence 7999999999999999999987532 23345555566555666665 478999999965 44455667789
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHhc----CCCEEEEEeCCCCCCCccc---h----hHH-hcCCCCcEecccccC
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRKS----GQPIVLVINKSENINSSIS---L----DFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~~----~~p~ilv~NK~D~~~~~~~---~----~~~-~~~~~~~~~iSA~~g 148 (1250)
++|++++|+|+++..+... ..|...+.+. ..|+++|+||+|+.+.... . .+. .++. +++++||++|
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~g 150 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWSVSALSG 150 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEEEECCCC
Confidence 9999999999976322111 2233333222 2468999999998654321 1 122 2333 6789999999
Q ss_pred CchhHHHHHHHHhhC
Q psy17091 149 NGIKNFLENILTIEL 163 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~ 163 (1250)
.|++++++.+.+...
T Consensus 151 ~~v~~lf~~l~~~~~ 165 (170)
T cd04108 151 ENVREFFFRVAALTF 165 (170)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 380
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=2.5e-15 Score=157.21 Aligned_cols=149 Identities=17% Similarity=0.084 Sum_probs=106.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
++|+++|.+|||||||++++++.... ....++++.+.....+.+.+. .+.+|||||.. .+......++
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~ 77 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE---------RFRSITQSYY 77 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHHh
Confidence 68999999999999999999976532 233455556666666777774 57899999964 3444556678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHHhcCCCCcEecccccCCch
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~~~~~~~~~~iSA~~g~gi 151 (1250)
..+|++++|+|.+++.+... ..+...++. .+.|+++|+||+|+...... ..+.......++++||++|.|+
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 78 RSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNV 157 (169)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 89999999999986422211 123333332 46889999999998754443 2233333346789999999999
Q ss_pred hHHHHHHHHh
Q psy17091 152 KNFLENILTI 161 (1250)
Q Consensus 152 ~~L~~~i~~~ 161 (1250)
+++++.+.+.
T Consensus 158 ~~l~~~i~~~ 167 (169)
T cd04114 158 EKLFLDLACR 167 (169)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 381
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.65 E-value=1.4e-15 Score=185.93 Aligned_cols=149 Identities=23% Similarity=0.368 Sum_probs=118.1
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE-EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.|+|+++|++|+|||||+++|.+.+.+ ....+|+|.+.....+.+++. .++||||||+.. +.......+
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~---------F~~~r~rga 156 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA---------FTSMRARGA 156 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcc---------hhhHHHhhh
Confidence 379999999999999999999987654 455678999888777888654 999999999863 334445667
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCcc--c-hhHHhcCC--------CCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI--S-LDFYELGI--------GNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~--~-~~~~~~~~--------~~~~~iSA~~g~ 149 (1250)
..+|++++|+|+.++..++..+....++..++|+++++||+|+.+... . ..+...++ .+++++||++|.
T Consensus 157 ~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 157 KVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred ccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 899999999999988888777777778778999999999999865322 1 12212221 257999999999
Q ss_pred chhHHHHHHHH
Q psy17091 150 GIKNFLENILT 160 (1250)
Q Consensus 150 gi~~L~~~i~~ 160 (1250)
|++++++.+..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999864
No 382
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.65 E-value=4.2e-15 Score=154.13 Aligned_cols=147 Identities=21% Similarity=0.194 Sum_probs=101.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|.+|||||||+|+|++.... ....|..+.+.....+.+++ ..+.+|||||.. .+.......++
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~~ 71 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFD-PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE---------RFRTLTSSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-cccCCcccceEEEEEEEECCEEEEEEEEECCCch---------hhhhhhHHHhC
Confidence 7999999999999999999987643 22334444444444444554 578999999964 33344455678
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCch
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi 151 (1250)
.+|++++|+|.++..+... ..+.+.+.. .+.|+++|+||+|+...... .++. ..++ +++++||++|.|+
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 150 (161)
T cd01863 72 GAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNM-LFIETSAKTRDGV 150 (161)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCC-EEEEEecCCCCCH
Confidence 9999999999886433222 123333332 46789999999999743322 2222 2333 6899999999999
Q ss_pred hHHHHHHHHh
Q psy17091 152 KNFLENILTI 161 (1250)
Q Consensus 152 ~~L~~~i~~~ 161 (1250)
+++++.+.+.
T Consensus 151 ~~~~~~~~~~ 160 (161)
T cd01863 151 QQAFEELVEK 160 (161)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 383
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.65 E-value=1.5e-15 Score=189.51 Aligned_cols=149 Identities=25% Similarity=0.369 Sum_probs=120.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.|.|+++|++|+|||||+++|.+.+.. .+..+++|.+.....+.+++..++||||||+.. |.......+.
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~---------F~~m~~rga~ 359 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEA---------FTAMRARGAQ 359 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCcc---------chhHHHhhhh
Confidence 379999999999999999999987654 456778999888888889999999999999863 3344456678
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCcc--c-hhHHhcC--------CCCcEecccccCCc
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI--S-LDFYELG--------IGNPHIISALYGNG 150 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~--~-~~~~~~~--------~~~~~~iSA~~g~g 150 (1250)
.+|++|+|+|+.++...+..+.+.+++..+.|+++|+||+|+..... . .++...+ ..+++++||++|.|
T Consensus 360 ~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G 439 (787)
T PRK05306 360 VTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG 439 (787)
T ss_pred hCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence 89999999999998888887878888888999999999999965321 1 2222111 13679999999999
Q ss_pred hhHHHHHHHH
Q psy17091 151 IKNFLENILT 160 (1250)
Q Consensus 151 i~~L~~~i~~ 160 (1250)
+++|++.+..
T Consensus 440 I~eLle~I~~ 449 (787)
T PRK05306 440 IDELLEAILL 449 (787)
T ss_pred chHHHHhhhh
Confidence 9999999874
No 384
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.65 E-value=1.6e-15 Score=157.12 Aligned_cols=144 Identities=22% Similarity=0.328 Sum_probs=98.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC-CEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
+|+++|.+|||||||+|+|++.... ...|++. .....+.+. +..+.+|||||.. .+...+..++..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~--~~~~t~~--~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~~~ 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV--TTIPTVG--FNVEMLQLEKHLSLTVWDVGGQE---------KMRTVWKCYLEN 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc--cccCccC--cceEEEEeCCceEEEEEECCCCH---------hHHHHHHHHhcc
Confidence 5899999999999999999988743 2233222 223334443 4689999999975 334445567889
Q ss_pred CCEEEEEEeCCCCC--ChhhHHHHHHHHh---cCCCEEEEEeCCCCCCCccchhH---Hh---cC---CCCcEecccccC
Q psy17091 83 SDIIIFIVDGRQGL--VEQDKLITNFLRK---SGQPIVLVINKSENINSSISLDF---YE---LG---IGNPHIISALYG 148 (1250)
Q Consensus 83 ad~il~v~D~~~~~--~~~~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~---~~---~~---~~~~~~iSA~~g 148 (1250)
+|++++|+|++++. ......+..+++. .+.|+++|+||+|+.......+. .. .. ..+++++||++|
T Consensus 68 ~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTG 147 (160)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccC
Confidence 99999999998743 2222334444432 47899999999998643222111 11 11 114788999999
Q ss_pred CchhHHHHHHHH
Q psy17091 149 NGIKNFLENILT 160 (1250)
Q Consensus 149 ~gi~~L~~~i~~ 160 (1250)
.|+++++++|.+
T Consensus 148 ~gv~~~~~~i~~ 159 (160)
T cd04156 148 EGLAEAFRKLAS 159 (160)
T ss_pred CChHHHHHHHhc
Confidence 999999998853
No 385
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=2.3e-15 Score=161.46 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=123.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccc-cCCCcceeeeEEEEEECCEEEEEEecCCCCcch--hhHHHHHHHHHHHHHh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVA-NYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV--KKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~-~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~ 80 (1250)
+|+++|+||||||||+|+|++++.+.++ ..+++|++++.....+++..+.+|||||+.+.. .+.+..++...+..+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 7999999999999999999998865444 356899999999999999999999999997542 2345556666666667
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHhc-C----CCEEEEEeCCCCCCCccc-----------hhHHhcCCCCcEec-
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKS-G----QPIVLVINKSENINSSIS-----------LDFYELGIGNPHII- 143 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~~-~----~p~ilv~NK~D~~~~~~~-----------~~~~~~~~~~~~~i- 143 (1250)
.++|++|||+|+.+ ++..+..+.+++++. + .++++|+|++|....... .......-+..+..
T Consensus 82 ~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~ 160 (196)
T cd01852 82 PGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFN 160 (196)
T ss_pred CCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEe
Confidence 88999999999987 888888888888762 3 689999999998764432 11222211122222
Q ss_pred ----ccccCCchhHHHHHHHHhhCCc
Q psy17091 144 ----SALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 144 ----SA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
|+..+.++.+|++.+.+.+.+.
T Consensus 161 ~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 161 NKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999888763
No 386
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.65 E-value=2.4e-15 Score=157.30 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=104.7
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.||||||||++++.+... ...+.+|+.+.....+.+++ ..+.+|||||+.+.. ... ..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~-~~ 68 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT----------AMR-EL 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccch----------hhh-HH
Confidence 6899999999999999999997653 22344455444445555655 467789999985442 111 23
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHH----HcCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIY----ESGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~----~~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.++.+|++++|+|.+++.+.+... +...+. ..++|+++|+||+|+.+.... .+....+.+ ..+..+++++|
T Consensus 69 ~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~S 145 (168)
T cd04177 69 YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ---QWGNVPFYETS 145 (168)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH---HcCCceEEEee
Confidence 457899999999998864443332 233332 247999999999999754322 111222222 22346899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHVY 352 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (1250)
|++|.|++++|+++...+
T Consensus 146 A~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 146 ARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987643
No 387
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.65 E-value=2.3e-15 Score=158.41 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=102.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|.+|||||||++++..+.. ...+.+++.+.....+.+++ ..+.||||||.+. +......++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED---------YDRLRPLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc---------hhhhhhhhc
Confidence 4899999999999999999998763 33344444333333456666 4678999999762 333445578
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCcc------------c-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~D~~~~~~------------~-----~~~~-~~~~~ 138 (1250)
+++|++++|+|.+++.+.... .|...++. .+.|+++|+||+|+.+... + .++. ..+..
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~ 150 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV 150 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCc
Confidence 899999999999875433322 24444443 3679999999999865321 1 1111 23333
Q ss_pred CcEecccccCCchhHHHHHHHH
Q psy17091 139 NPHIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~ 160 (1250)
.++++||++|.|++++++.+.+
T Consensus 151 ~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred EEEEecCCCCCCHHHHHHHHHH
Confidence 6899999999999999999876
No 388
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.65 E-value=1.5e-15 Score=156.75 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=101.7
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||+++++...... ..+.+ .......+.+++. .+.+|||+|.... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~~----------------~ 61 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ--LESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPDA----------------Q 61 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC--CCCCC-ccceEEEEEECCEEEEEEEEECCCCCch----------------h
Confidence 479999999999999999988654321 22222 2333355677774 4778999999421 2
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|.++.-+.+.. .++..+.. .+.|+++|+||.|+..........++.++.......+++++|||
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 141 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA 141 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence 34679999999999998777663 45555543 35799999999998532111111122222222223468999999
Q ss_pred CCCCChHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINH 350 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~ 350 (1250)
++|.||+++|+.+.+
T Consensus 142 k~~~~i~~~f~~~~~ 156 (158)
T cd04103 142 TYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999998864
No 389
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.65 E-value=2.5e-15 Score=158.03 Aligned_cols=145 Identities=19% Similarity=0.267 Sum_probs=102.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+++|++.... ...| |.........+++..+.+|||||+. ++......+++.
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~~~~ 82 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV--HTSP--TIGSNVEEIVYKNIRFLMWDIGGQE---------SLRSSWNTYYTN 82 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC--CcCC--ccccceEEEEECCeEEEEEECCCCH---------HHHHHHHHHhhc
Confidence 58999999999999999999876533 2233 3333345566778899999999975 344555667889
Q ss_pred CCEEEEEEeCCCCCCh--hhHHHHHHHHh---cCCCEEEEEeCCCCCCCccchhHH-hcCC-------CCcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGI-------GNPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~-~~~~-------~~~~~iSA~~g~ 149 (1250)
+|+++||+|++++... ....+.++++. .+.|+++++||+|+.......+.. .++. -+++++||++|.
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 9999999999874221 12234444433 358999999999986532221111 1211 146899999999
Q ss_pred chhHHHHHHHH
Q psy17091 150 GIKNFLENILT 160 (1250)
Q Consensus 150 gi~~L~~~i~~ 160 (1250)
|+++++++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999998863
No 390
>PLN03110 Rab GTPase; Provisional
Probab=99.65 E-value=4.6e-15 Score=161.52 Aligned_cols=151 Identities=19% Similarity=0.126 Sum_probs=110.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+++|++.... ....|+++.+.....+.+++ ..+.||||||.. ++......++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 82 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE---------RYRAITSAYY 82 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHHh
Confidence 48999999999999999999987643 34456666676666777766 478899999964 4445566778
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.++++|+|+|.++..+... ..|...++. .+.|+++|+||+|+...... ..+. ..+. +++++||++|.|
T Consensus 83 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~SA~~g~~ 161 (216)
T PLN03110 83 RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL-SFLETSALEATN 161 (216)
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999987433222 123333333 36899999999998654433 1121 2233 689999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+..
T Consensus 162 v~~lf~~l~~~i~~ 175 (216)
T PLN03110 162 VEKAFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887754
No 391
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.64 E-value=2.5e-15 Score=156.93 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=104.3
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
+|+++|.+|||||||++++.+.......+..|.+ ...+.+++..+.+|||||..+ +... ...+++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~~~~~ 65 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGAN----------FRGI-WVNYYA 65 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCcHH----------HHHH-HHHHHc
Confidence 4899999999999999999976322223333333 345667788999999999832 2211 236779
Q ss_pred cCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHH--HHHhccCC-CCeEEEeec
Q psy17091 264 EANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNI--KKKLNFLS-FAMFNFISA 335 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l--~~~l~~~~-~~~iv~iSA 335 (1250)
.+|++++|+|+++..+..+. .++..+.. .++|+++|+||+|+.+.....+..+.+ .+.....+ ..+++++||
T Consensus 66 ~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa 145 (167)
T cd04161 66 EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSA 145 (167)
T ss_pred CCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEc
Confidence 99999999999886443332 23444433 378999999999997654444444432 22221112 357888999
Q ss_pred CCC------CChHHHHHHHHH
Q psy17091 336 IKL------NNINSFMESINH 350 (1250)
Q Consensus 336 ~~g------~gv~~l~~~i~~ 350 (1250)
++| .|+++.|+||.+
T Consensus 146 ~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 146 IEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eeCCCCccccCHHHHHHHHhc
Confidence 998 899999999864
No 392
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.64 E-value=4.6e-15 Score=154.40 Aligned_cols=150 Identities=20% Similarity=0.178 Sum_probs=101.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCC-cceeeeEEEEEEC---CEEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPG-LTRDRHYGEGYIG---KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~-~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
+|+++|.+|||||||+++|..........+.. +..+.....+... ...+.+|||||.. .+......+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE---------LYSDMVSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH---------HHHHHHHHH
Confidence 79999999999999999998653222333333 3344444444442 3689999999953 333445667
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCCccc----hhHHhcCC-CCcEecccccCCch
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS----LDFYELGI-GNPHIISALYGNGI 151 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~D~~~~~~~----~~~~~~~~-~~~~~iSA~~g~gi 151 (1250)
+.++|++++|+|.++..+... ..|...+.. .+.|+++|+||+|+.+.... .+.+.... .+++++||++|.|+
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 152 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGY 152 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCh
Confidence 889999999999986422221 223333333 35899999999999665433 12222222 25789999999999
Q ss_pred hHHHHHHHHhh
Q psy17091 152 KNFLENILTIE 162 (1250)
Q Consensus 152 ~~L~~~i~~~l 162 (1250)
+++++.+.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999988643
No 393
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.64 E-value=4.5e-15 Score=152.96 Aligned_cols=152 Identities=20% Similarity=0.161 Sum_probs=101.4
Q ss_pred EEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhcc
Q psy17091 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILE 264 (1250)
Q Consensus 185 i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ 264 (1250)
|+++|.+|||||||+|+|.+.+.. ....|.+..+. ..+..++..+.+|||||+.. +.. ....+++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~----------~~~-~~~~~~~~ 67 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIPTVGFNM--RKVTKGNVTLKVWDLGGQPR----------FRS-MWERYCRG 67 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccCCCCcce--EEEEECCEEEEEEECCCCHh----------HHH-HHHHHHhc
Confidence 899999999999999999987543 22344333333 34556677899999999832 221 12345688
Q ss_pred CcEEEEEecCCCCCCHH-HHHHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCC
Q psy17091 265 ANVVILLLDAQQNISAQ-DINIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (1250)
Q Consensus 265 ad~vllviD~~~~~~~~-d~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~ 339 (1250)
+|++++|+|+++..+.. ....+..+.. .++|+++|+||+|+.+.....+..+.+..........+++++||++|.
T Consensus 68 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (159)
T cd04159 68 VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKT 147 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCC
Confidence 99999999998742221 1122222222 478999999999987654433333332211111233688999999999
Q ss_pred ChHHHHHHHHH
Q psy17091 340 NINSFMESINH 350 (1250)
Q Consensus 340 gv~~l~~~i~~ 350 (1250)
|++++++++.+
T Consensus 148 gi~~l~~~l~~ 158 (159)
T cd04159 148 NIDIVLDWLIK 158 (159)
T ss_pred ChHHHHHHHhh
Confidence 99999999864
No 394
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.64 E-value=5.1e-15 Score=172.74 Aligned_cols=212 Identities=17% Similarity=0.234 Sum_probs=154.1
Q ss_pred CCeEEEEEeccCCC--ceeeeecccCCcccccccccCCC-C---cccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCC
Q psy17091 602 KNIIETVFIPEKNR--NTLCISTQVGCAINCIFCSTGRQ-G---FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQ 675 (1250)
Q Consensus 602 ~~~ve~v~~~~~~~--~t~c~ssq~GC~~~C~fC~t~~~-~---~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~ 675 (1250)
-+-|++-+...-+| .++++|...+|+++|.||+.+.. . -.+.||.+||...+..+.. .-
T Consensus 42 ~~~~~~~l~D~~gr~~~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~---------------~G 106 (373)
T PLN02951 42 SNPVSDMLVDSFGRRHNYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVA---------------AG 106 (373)
T ss_pred CCCCCcccccCCCCcccEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHH---------------CC
Confidence 46777777765444 57999999999999999986531 1 1245899988776644332 12
Q ss_pred cceeeecccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCch--hHHHHhhhhCCCeEEEEccCCChhhhhccCC
Q psy17091 676 ITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGII--PMIDKLAQECPVELAVSLHASNNNLRNKLVP 753 (1250)
Q Consensus 676 ~~~ivfmg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~--~~i~~~~~~~~~~la~sl~~~~~~~r~~~~p 753 (1250)
+..|.|.| ||||++++ +.+.++.+++..|+ .++++.|+|.. +.+.+|.+.---.+.|||++.+++.++++..
T Consensus 107 v~~I~~tG-GEPllr~d-l~eli~~l~~~~gi----~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr 180 (373)
T PLN02951 107 VDKIRLTG-GEPTLRKD-IEDICLQLSSLKGL----KTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTR 180 (373)
T ss_pred CCEEEEEC-CCCcchhh-HHHHHHHHHhcCCC----ceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhc
Confidence 67799999 99999976 67788877763232 36999999964 3355555432224779999999999999964
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCCCCcHH
Q psy17091 754 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNS 833 (1250)
Q Consensus 754 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~~p~~e 833 (1250)
...++.++++++...+. +..+|.+++++++|+||. ++.+++++++. .+..|.+|.|.|+++.+|.....-
T Consensus 181 ---~~~~~~vl~~I~~a~~~-G~~~vkin~vv~~g~N~~--Ei~~li~~a~~----~gi~vr~ie~mP~~~~~~~~~~~~ 250 (373)
T PLN02951 181 ---RKGHDRVLESIDTAIEL-GYNPVKVNCVVMRGFNDD--EICDFVELTRD----KPINVRFIEFMPFDGNVWNVKKLV 250 (373)
T ss_pred ---CCCHHHHHHHHHHHHHc-CCCcEEEEEEecCCCCHH--HHHHHHHHHHh----CCCeEEEEEcccCCCCccccccCC
Confidence 34579999999877654 434799999999999994 59999999998 667899999999987665433222
Q ss_pred HHHHHHHHHHh
Q psy17091 834 RIKIFAKILMN 844 (1250)
Q Consensus 834 ~i~~f~~iL~~ 844 (1250)
...++.+.+++
T Consensus 251 ~~~ei~~~l~~ 261 (373)
T PLN02951 251 PYAEMMDRIEQ 261 (373)
T ss_pred CHHHHHHHHHH
Confidence 34445555544
No 395
>KOG0087|consensus
Probab=99.64 E-value=1e-15 Score=155.18 Aligned_cols=151 Identities=23% Similarity=0.137 Sum_probs=119.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
+||+++|.|+||||-|+.|++..... ..+.+++..+.....+.++++ ..+||||+|++ +++..+..++
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~-~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQE---------RyrAitSaYY 84 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFS-LESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQE---------RYRAITSAYY 84 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccC-cccccceeEEEEeeceeecCcEEEEeeecccchh---------hhccccchhh
Confidence 68999999999999999999988765 566677778888888888886 67899999976 7778889999
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHHhcCCCCcEecccccCCch
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~~~~~~~~~~iSA~~g~gi 151 (1250)
+.|.++++|+|.+...+.+. ..|++.|+. .++++++|+||+||.+...+ ..+.+...-..+.+||+.+.|+
T Consensus 85 rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 85 RGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNV 164 (222)
T ss_pred cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccH
Confidence 99999999999987655553 234555554 56889999999999875444 3343333236789999999999
Q ss_pred hHHHHHHHHhhC
Q psy17091 152 KNFLENILTIEL 163 (1250)
Q Consensus 152 ~~L~~~i~~~l~ 163 (1250)
+..++.+...+.
T Consensus 165 e~aF~~~l~~I~ 176 (222)
T KOG0087|consen 165 EKAFERVLTEIY 176 (222)
T ss_pred HHHHHHHHHHHH
Confidence 999988876554
No 396
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.64 E-value=3.9e-15 Score=162.23 Aligned_cols=153 Identities=21% Similarity=0.140 Sum_probs=104.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC--CEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG--KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+++++..... ....|++..+.....+..+ ...+.+|||||.. .+......++
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~-~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 83 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDGYY 83 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCC-CccCCccceeEEEEEEEECCeEEEEEEEECCCch---------hhhhhhHHHc
Confidence 48999999999999999999876532 2223333334433344443 3588999999975 3334455578
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCCccc---hhHHhcCCCCcEecccccCCchhHH
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS---LDFYELGIGNPHIISALYGNGIKNF 154 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~~iSA~~g~gi~~L 154 (1250)
+.+|++|+|+|.++..+... ..|.+.+++ .+.|+++|+||+|+...... .++.....-.++++||++|.|++++
T Consensus 84 ~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred ccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHH
Confidence 89999999999987433222 123333332 36899999999998643322 2333322236799999999999999
Q ss_pred HHHHHHhhCCc
Q psy17091 155 LENILTIELPY 165 (1250)
Q Consensus 155 ~~~i~~~l~~~ 165 (1250)
++++.+.+.+.
T Consensus 164 f~~l~~~~~~~ 174 (219)
T PLN03071 164 FLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHcC
Confidence 99999877543
No 397
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.64 E-value=3.5e-14 Score=158.61 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=95.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCC-----ccc------------ccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRD-----ALV------------ANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~-----~~v------------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 66 (1250)
.|+++|++|+|||||+|+|+.... ..+ ....++|.+.....++|++.++.+|||||+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~----- 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHV----- 75 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcH-----
Confidence 489999999999999999973211 111 1345889999999999999999999999975
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q psy17091 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN 125 (1250)
Q Consensus 67 ~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~ 125 (1250)
.+...+..+++.+|++++|+|+..+....+..+.+.++..++|+++++||+|+.+
T Consensus 76 ----df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 76 ----DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred ----HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 3556678889999999999999998888888888888889999999999999764
No 398
>PLN03118 Rab family protein; Provisional
Probab=99.64 E-value=2.6e-15 Score=163.22 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=107.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+++|++.... ...|.++.+.....+.+++ ..+.||||||+. ++......++
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 83 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE---------RFRTLTSSYY 83 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEECCEEEEEEEEECCCch---------hhHHHHHHHH
Confidence 58999999999999999999987643 2334444555555556655 478899999975 3444556678
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g 148 (1250)
+.+|++++|+|.++..+.... .+...+.. .+.|+++|+||+|+...... .++. ..+. .++++||++|
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~SAk~~ 162 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGC-LFLECSAKTR 162 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 899999999999874332221 13333332 35689999999998754433 1222 2333 5789999999
Q ss_pred CchhHHHHHHHHhhCCc
Q psy17091 149 NGIKNFLENILTIELPY 165 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~~ 165 (1250)
.|++++++.+.+.+...
T Consensus 163 ~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 163 ENVEQCFEELALKIMEV 179 (211)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999877544
No 399
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=4.7e-15 Score=161.41 Aligned_cols=150 Identities=17% Similarity=0.128 Sum_probs=105.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||++++++.... ....|++..+. ...+..++ ..+.||||||.+ .+......++
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~-~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e---------~~~~~~~~~~ 82 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENY-TAGLETEEQRVELSLWDTSGSP---------YYDNVRPLCY 82 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCC-CCcCCceeeee-EEEEEECCEEEEEEEEeCCCch---------hhHHHHHHHc
Confidence 48999999999999999999987532 22334333333 33455555 478899999965 4445556678
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCC------------ccc-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINS------------SIS-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~D~~~~------------~~~-----~~~~-~~~~~ 138 (1250)
+++|++++|+|.++..+... ..|...+++ .+.|+++|+||+|+... ..+ .++. ..+..
T Consensus 83 ~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~ 162 (232)
T cd04174 83 SDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE 162 (232)
T ss_pred CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCC
Confidence 99999999999987544332 234454543 36799999999998542 112 2222 34443
Q ss_pred CcEecccccCC-chhHHHHHHHHhhC
Q psy17091 139 NPHIISALYGN-GIKNFLENILTIEL 163 (1250)
Q Consensus 139 ~~~~iSA~~g~-gi~~L~~~i~~~l~ 163 (1250)
.++++||++|. |++++|+.+...+.
T Consensus 163 ~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred EEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 57899999998 89999999987654
No 400
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.64 E-value=5.6e-16 Score=170.80 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCC-hhh-HHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEec
Q psy17091 71 EMTKQTKQAIIESDIIIFIVDGRQGLV-EQD-KLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHII 143 (1250)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~D~~~~~~-~~~-~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~i 143 (1250)
++......+++++|.+++|+|++++.. ... ..+...+...++|+++|+||+|+.+.... .+.+ ..+. .++.+
T Consensus 25 R~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~-~v~~~ 103 (245)
T TIGR00157 25 RKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGY-QVLMT 103 (245)
T ss_pred ccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCC-eEEEE
Confidence 334444457899999999999986542 222 22334444578999999999999754332 2233 4444 68999
Q ss_pred ccccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCC-------Cc
Q psy17091 144 SALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-------GT 216 (1250)
Q Consensus 144 SA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~-------gt 216 (1250)
||++|.|++++++.+.. -.++++|.||||||||+|+|++.....+++.+ .|
T Consensus 104 SAktg~gi~eLf~~l~~----------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hT 161 (245)
T TIGR00157 104 SSKNQDGLKELIEALQN----------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHT 161 (245)
T ss_pred ecCCchhHHHHHhhhcC----------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCc
Confidence 99999999999987631 24889999999999999999987766655443 38
Q ss_pred ceeeEEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 217 TRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 217 T~~~~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
|++.....+ . ...|+||||+....
T Consensus 162 T~~~~l~~l--~--~~~liDtPG~~~~~ 185 (245)
T TIGR00157 162 TTHVELFHF--H--GGLIADTPGFNEFG 185 (245)
T ss_pred CCceEEEEc--C--CcEEEeCCCccccC
Confidence 888766555 2 24899999998765
No 401
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.64 E-value=2.8e-15 Score=160.17 Aligned_cols=147 Identities=23% Similarity=0.274 Sum_probs=103.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
..+|+++|++|||||||+|+|.+.... ...| |.......+.+++..+.+|||||.. .+...+..+++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~--~~~~--T~~~~~~~i~~~~~~~~l~D~~G~~---------~~~~~~~~~~~ 85 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA--QHVP--TLHPTSEELTIGNIKFKTFDLGGHE---------QARRLWKDYFP 85 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc--ccCC--ccCcceEEEEECCEEEEEEECCCCH---------HHHHHHHHHhc
Confidence 368999999999999999999987642 1222 4444556777888999999999964 33445567788
Q ss_pred cCCEEEEEEeCCCCCC--hhhHHHHHHHH---hcCCCEEEEEeCCCCCCCccc---hhHHhc----------------CC
Q psy17091 82 ESDIIIFIVDGRQGLV--EQDKLITNFLR---KSGQPIVLVINKSENINSSIS---LDFYEL----------------GI 137 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~--~~~~~~~~~l~---~~~~p~ilv~NK~D~~~~~~~---~~~~~~----------------~~ 137 (1250)
.+|++++|+|+++..+ .....+...++ ..+.|+++|+||+|+...... .+.... ..
T Consensus 86 ~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T cd00879 86 EVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRP 165 (190)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCcee
Confidence 9999999999986321 12223333333 245899999999998643222 222211 01
Q ss_pred CCcEecccccCCchhHHHHHHHHh
Q psy17091 138 GNPHIISALYGNGIKNFLENILTI 161 (1250)
Q Consensus 138 ~~~~~iSA~~g~gi~~L~~~i~~~ 161 (1250)
..++++||++|.|++++++++.+.
T Consensus 166 ~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 166 IEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEEeEecCCCChHHHHHHHHhh
Confidence 146899999999999999999764
No 402
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=5e-15 Score=160.51 Aligned_cols=150 Identities=21% Similarity=0.186 Sum_probs=107.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC-C--EEEEEEecCCCCcchhhHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-K--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQ 78 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 78 (1250)
..||+++|.+|||||||+|+|++..... ...|+++.+.....+.+. + ..+.+|||||+. .+......
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~-~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~ 71 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAE-VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE---------RFRSITRS 71 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCceeceEEEEEEEEECCCCEEEEEEEeCCcch---------hHHHHHHH
Confidence 4689999999999999999999877442 234555666665556553 3 478899999964 34445566
Q ss_pred HhhcCCEEEEEEeCCCCCChhhHHHHHHHHh-------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEeccc
Q psy17091 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLRK-------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISA 145 (1250)
Q Consensus 79 ~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~-------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA 145 (1250)
+++++|++++|+|.++..+ ...+.+|+.. ...|+++|+||+|+.+.... .++. ..+ ..++++||
T Consensus 72 ~~~~~d~iilv~D~~~~~S--f~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 148 (211)
T cd04111 72 YYRNSVGVLLVFDITNRES--FEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSA 148 (211)
T ss_pred HhcCCcEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeC
Confidence 7899999999999987422 2223333332 24578999999998764333 2222 334 36899999
Q ss_pred ccCCchhHHHHHHHHhhCC
Q psy17091 146 LYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 146 ~~g~gi~~L~~~i~~~l~~ 164 (1250)
++|.|++++++.+.+.+..
T Consensus 149 k~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 149 RTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999886643
No 403
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.64 E-value=4.7e-15 Score=154.06 Aligned_cols=148 Identities=17% Similarity=0.163 Sum_probs=105.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|.+|||||||+|++++... +....+++.+........++ ..+.+|||||.. .+......++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~ 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE---------DYAAIRDNYH 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChh---------hhhHHHHHHh
Confidence 3899999999999999999997653 34555666665555555654 478999999965 3334455678
Q ss_pred hcCCEEEEEEeCCCCCCh--hhHHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVE--QDKLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~--~~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
+.+|++++|+|..++.+. ....+..+++. .++|+++|+||+|+...... ..+. .++. +++++||++|.
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T cd04139 70 RSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGV-PYVETSAKTRQ 148 (164)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence 899999999998763221 12223333333 57899999999999763221 1222 3344 78999999999
Q ss_pred chhHHHHHHHHhh
Q psy17091 150 GIKNFLENILTIE 162 (1250)
Q Consensus 150 gi~~L~~~i~~~l 162 (1250)
|++++++.+.+.+
T Consensus 149 gi~~l~~~l~~~~ 161 (164)
T cd04139 149 NVEKAFYDLVREI 161 (164)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 404
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.64 E-value=1.9e-15 Score=186.30 Aligned_cols=149 Identities=28% Similarity=0.393 Sum_probs=112.9
Q ss_pred eCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEE
Q psy17091 9 GRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIF 88 (1250)
Q Consensus 9 G~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~ 88 (1250)
|.||||||||+|+|++.+. .++++||+|++...+.+++++.++.+|||||+.+.......+++.+... ....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l-~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYL-LNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHH-hhcCCCEEEE
Confidence 8999999999999998875 5889999999999999999999999999999875432222223333221 2357999999
Q ss_pred EEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCchhHHHHHHHHhh
Q psy17091 89 IVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 89 v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
|+|+++ .+....+...+.+.++|+++|+||+|+.+.... .++. .++. +++++||++|.|++++++.+.+..
T Consensus 79 VvDat~--ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~-pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 79 VVDASN--LERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGV-PVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred EecCCc--chhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHHHh
Confidence 999986 233334444555678999999999998654432 1222 3344 789999999999999999998754
No 405
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.64 E-value=7.2e-15 Score=152.27 Aligned_cols=150 Identities=21% Similarity=0.160 Sum_probs=103.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|.+|||||||+|++++.... ....+.++.+.....+.+.+. .+.+|||||.. .+......++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~ 70 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE---------RYHALGPIYY 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCEEEEEEEEECCchH---------HHHHhhHHHh
Confidence 37999999999999999999987643 233344445555555555554 68899999954 3334455567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHHhcCCCCcEecccccCCch
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~~~~~~~~~~iSA~~g~gi 151 (1250)
.++|++++|+|.+++.+... ..+...++. .++|+++|+||+|+...... .++........+++||+++.|+
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi 150 (162)
T cd04123 71 RDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGI 150 (162)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 89999999999987432222 122222332 25799999999998754332 1222222236799999999999
Q ss_pred hHHHHHHHHhh
Q psy17091 152 KNFLENILTIE 162 (1250)
Q Consensus 152 ~~L~~~i~~~l 162 (1250)
+++++++.+.+
T Consensus 151 ~~~~~~l~~~~ 161 (162)
T cd04123 151 EELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHh
Confidence 99999997653
No 406
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.64 E-value=3.8e-15 Score=156.22 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=104.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|.+|||||||+.+++.+.. ...+.++..+.....+..++ ..+.+|||+|.+ ++......++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~---------~~~~~~~~~~ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQE---------DYNRLRPLSY 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCc---------cccccchhhc
Confidence 3799999999999999999998763 22333333333334455555 478899999976 3334455578
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCc----------cc-----hhHH-hcCCCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINSS----------IS-----LDFY-ELGIGNP 140 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~D~~~~~----------~~-----~~~~-~~~~~~~ 140 (1250)
+++|++|+|+|.++..+.... .|...++. .+.|+++|+||+|+.+.. .+ ..+. ..+....
T Consensus 71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 150 (176)
T cd04133 71 RGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAY 150 (176)
T ss_pred CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEE
Confidence 999999999999875444332 34444443 367999999999996532 12 1222 2344357
Q ss_pred EecccccCCchhHHHHHHHHhh
Q psy17091 141 HIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 141 ~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
+++||++|.|++++++.+.+.+
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EECCCCcccCHHHHHHHHHHHH
Confidence 8999999999999999998765
No 407
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.64 E-value=6.2e-15 Score=162.88 Aligned_cols=148 Identities=17% Similarity=0.217 Sum_probs=104.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+++|.+|||||||++++++... ...+.+++.+.....+.+++ ..+.||||+|... +......++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~---------~~~~~~~~~~ 70 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP---------FPAMRRLSIL 70 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh---------hhHHHHHHhc
Confidence 799999999999999999997763 23445555566666667777 4678999999752 2233344577
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh------------cCCCEEEEEeCCCCCCCccc--hh---HHhcC-CCCcEe
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK------------SGQPIVLVINKSENINSSIS--LD---FYELG-IGNPHI 142 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~------------~~~p~ilv~NK~D~~~~~~~--~~---~~~~~-~~~~~~ 142 (1250)
.+|++|+|+|.++..+... ..+.+++.. .++|+++|+||+|+...... .+ +.... ...+++
T Consensus 71 ~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~e 150 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFE 150 (247)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEE
Confidence 9999999999987432221 223333322 25799999999999753332 22 22211 225799
Q ss_pred cccccCCchhHHHHHHHHhh
Q psy17091 143 ISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 143 iSA~~g~gi~~L~~~i~~~l 162 (1250)
+||++|.|++++++.+....
T Consensus 151 vSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 151 VSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998755
No 408
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=5e-15 Score=156.00 Aligned_cols=148 Identities=15% Similarity=0.126 Sum_probs=102.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||+++|.+|||||||++++.+.... ..+.++..+.....+.+++. .+.+|||||.+ .+......++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~---------~~~~~~~~~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSGSP---------YYDNVRPLCY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCCch---------hhhhcchhhc
Confidence 58999999999999999999987532 23333322333344556654 68899999965 3333445678
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCC------------ccc-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINS------------SIS-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~D~~~~------------~~~-----~~~~-~~~~~ 138 (1250)
+++|++|+|+|.+++.+... ..|...+++ .+.|+++|+||+|+.+. ..+ .++. ..+..
T Consensus 71 ~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~ 150 (178)
T cd04131 71 PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAE 150 (178)
T ss_pred CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCC
Confidence 89999999999987544433 234444444 36799999999998541 112 2222 33433
Q ss_pred CcEecccccCCc-hhHHHHHHHHh
Q psy17091 139 NPHIISALYGNG-IKNFLENILTI 161 (1250)
Q Consensus 139 ~~~~iSA~~g~g-i~~L~~~i~~~ 161 (1250)
.++++||++|.| ++++|..+.+.
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHH
Confidence 679999999995 99999998763
No 409
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.63 E-value=3.8e-15 Score=156.80 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=103.0
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
.||+++|.+|||||||++++.+.... ..+.+|..+.....+.+++. .+.+|||||+.+. ..... .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~-~ 68 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY----------DRLRP-L 68 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchhh----------hhccc-c
Confidence 58999999999999999999976532 22333444443445566554 5678999998432 21111 3
Q ss_pred hhccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCccchHH----------HHHHHHHHhccCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQRKI----------IKNNIKKKLNFLS 326 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~----------~~~~l~~~l~~~~ 326 (1250)
.++.+|++++|+|+++..+..+. .+...+.. .++|+++|+||+|+.+...... .....++.....+
T Consensus 69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~ 148 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG 148 (175)
T ss_pred ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcC
Confidence 56889999999999875443333 23333333 3799999999999865322110 0111222222233
Q ss_pred CCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 327 FAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 327 ~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
..+++++||++|.|++++|+++.+.
T Consensus 149 ~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 149 AFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred CcEEEEeccccCcCHHHHHHHHHHH
Confidence 4589999999999999999998754
No 410
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.63 E-value=5.4e-15 Score=158.40 Aligned_cols=149 Identities=20% Similarity=0.216 Sum_probs=102.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcc-eeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLT-RDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T-~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
||+++|.+|||||||+|++++.+.. ...+.+++ .+.....+.+++. .+.+|||||.. ++......++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~ 71 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE---------RYEAMSRIYY 71 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCch---------hhhhhhHhhc
Confidence 7999999999999999999987643 22333333 3333445666665 56699999975 2223344567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHhc--CCCEEEEEeCCCCCCCcc----c-----hhHH-hcCCCCcEeccccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRKS--GQPIVLVINKSENINSSI----S-----LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~~--~~p~ilv~NK~D~~~~~~----~-----~~~~-~~~~~~~~~iSA~~ 147 (1250)
..+|++++|+|.++..+... ..+.+.++.. +.|+++|+||+|+..... . .++. ..+ .+++++||++
T Consensus 72 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSKT 150 (193)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 79999999999987422221 2344444432 689999999999864321 1 1222 223 3578999999
Q ss_pred CCchhHHHHHHHHhhC
Q psy17091 148 GNGIKNFLENILTIEL 163 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~ 163 (1250)
|.|++++++.+.+.+.
T Consensus 151 ~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 151 GQNVDELFQKVAEDFV 166 (193)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999997664
No 411
>KOG0098|consensus
Probab=99.63 E-value=3.5e-15 Score=147.43 Aligned_cols=157 Identities=18% Similarity=0.112 Sum_probs=111.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+|+.++|..|||||+|+-+++.+.+..+ .......+.....+..+++ ++++|||+|+ |.|... +
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~-hd~TiGvefg~r~~~id~k~IKlqiwDtaGq----------e~frsv-~ 72 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPV-HDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ----------ESFRSV-T 72 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccc-ccceeeeeeceeEEEEcCceEEEEEEecCCc----------HHHHHH-H
Confidence 368999999999999999999998654444 2333445666667777776 4667999999 555433 3
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
..+++.|-++|+|+|.++.-+...+. ++..+.. .+.-+++++||+||....+. ..++-+..... ....++++|
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~V--s~EEGeaFA~e-hgLifmETS 149 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREV--SKEEGEAFARE-HGLIFMETS 149 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccc--cHHHHHHHHHH-cCceeehhh
Confidence 46889999999999999985544433 2333332 46789999999999865433 23333333333 346788999
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHVY 352 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (1250)
|+++.|+++.|......+
T Consensus 150 akt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 150 AKTAENVEEAFINTAKEI 167 (216)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 999999999998765443
No 412
>PLN03126 Elongation factor Tu; Provisional
Probab=99.63 E-value=4e-15 Score=177.97 Aligned_cols=151 Identities=16% Similarity=0.192 Sum_probs=119.6
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcce---------------eccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV---------------ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~---------------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
++.++|+++|++|+|||||+++|++.... ......|+|.+.....+.+++..+.+|||||+.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~--- 155 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA--- 155 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH---
Confidence 34699999999999999999999952211 113357899998888888899999999999993
Q ss_pred cchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEeccccCCccc-hHHHHHHHHHHh
Q psy17091 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQ-RKIIKNNIKKKL 322 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~l~~~l 322 (1250)
.|. ......+..+|++++|+|+.+++..++.+++..+...++| +|+++||||+.+.++ .+...+++...+
T Consensus 156 -------~f~-~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l 227 (478)
T PLN03126 156 -------DYV-KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL 227 (478)
T ss_pred -------HHH-HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence 332 2345667889999999999999999999999999999999 778999999986433 344445666666
Q ss_pred ccC----CCCeEEEeecCCCCCh
Q psy17091 323 NFL----SFAMFNFISAIKLNNI 341 (1250)
Q Consensus 323 ~~~----~~~~iv~iSA~~g~gv 341 (1250)
... ...|++++||.+|.++
T Consensus 228 ~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 228 SSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HhcCCCcCcceEEEEEccccccc
Confidence 543 2578999999998754
No 413
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.63 E-value=3e-15 Score=182.64 Aligned_cols=157 Identities=20% Similarity=0.283 Sum_probs=110.2
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCC-CcceeeEEEEEEEc------------------CeeEEEEecCCCCC
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-GTTRDSIKSLFEYN------------------NKKYILIDTAGIRR 242 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~------------------~~~~~liDTpG~~~ 242 (1250)
+.-|+++|++|+|||||+|+|.+... ....+ |+|++.....+.++ ...+.+|||||+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e- 80 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE- 80 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH-
Confidence 45699999999999999999998743 22333 45654333322221 1248899999983
Q ss_pred CCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccc------------
Q psy17091 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ------------ 310 (1250)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~------------ 310 (1250)
.|...+. .+++.+|++++|+|++++.+.++...+..+...++|+++|+||+|+.+...
T Consensus 81 ---------~f~~l~~-~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sa 150 (590)
T TIGR00491 81 ---------AFTNLRK-RGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFS 150 (590)
T ss_pred ---------hHHHHHH-HHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHH
Confidence 3333333 456899999999999999999999998888888999999999999974210
Q ss_pred --hHHHHH-----------HHHHH----------hccCCCCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 311 --RKIIKN-----------NIKKK----------LNFLSFAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 311 --~~~~~~-----------~l~~~----------l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
...... ++.+. ..+....+++++||++|+|+++|+.++...
T Consensus 151 k~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 151 KQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 000000 11100 012235799999999999999999887554
No 414
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.63 E-value=5.5e-15 Score=152.82 Aligned_cols=152 Identities=22% Similarity=0.201 Sum_probs=106.1
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
||+++|.+|||||||+|++++.. ..+..++++.+.....+..++ ..+.+|||||+.+ +... ....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~-~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAM-RDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHH-HHHH
Confidence 58999999999999999999765 444566677776666677764 4678899999833 2211 2245
Q ss_pred hccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 262 ILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
++.+|++++|+|.++..+..+. .++..+.. .+.|+++|+||+|+.+..... .+.......... .+++++||+
T Consensus 68 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~-~~~~~~S~~ 144 (160)
T cd00876 68 IRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--KEEGKALAKEWG-CPFIETSAK 144 (160)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--HHHHHHHHHHcC-CcEEEeccC
Confidence 6789999999999876443332 23333332 379999999999997632211 122222222222 689999999
Q ss_pred CCCChHHHHHHHHHH
Q psy17091 337 KLNNINSFMESINHV 351 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~ 351 (1250)
+|.|++++++++.+.
T Consensus 145 ~~~~i~~l~~~l~~~ 159 (160)
T cd00876 145 DNINIDEVFKLLVRE 159 (160)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998653
No 415
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.63 E-value=8.5e-16 Score=165.32 Aligned_cols=155 Identities=27% Similarity=0.303 Sum_probs=120.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|++||.|+||||||+|+|++.+.. +.++|+||..+..+.++++|.+++++|+||+.+..... +..-+++...++.|
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g--~grG~~vlsv~R~A 141 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSG--RGRGRQVLSVARNA 141 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceEeecCceEEEEcCcccccCcccC--CCCcceeeeeeccC
Confidence 7999999999999999999998866 89999999999999999999999999999986443111 12236678889999
Q ss_pred CEEEEEEeCCCCCCh------------------------------------------hh-HHHHHHHHhc----------
Q psy17091 84 DIIIFIVDGRQGLVE------------------------------------------QD-KLITNFLRKS---------- 110 (1250)
Q Consensus 84 d~il~v~D~~~~~~~------------------------------------------~~-~~~~~~l~~~---------- 110 (1250)
|+|++|+|+...... .+ ..+..+|+++
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 999999998743221 11 1122333321
Q ss_pred -----------------CCCEEEEEeCCCCCCCccchhHHhcCCCCcEecccccCCchhHHHHHHHHhhC
Q psy17091 111 -----------------GQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 111 -----------------~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
-+|.+.|+||+|+...+......+.. +.+++||+.+.|+++|.+.++..+.
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 27999999999998844443333333 7899999999999999999998764
No 416
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.63 E-value=6.1e-15 Score=155.63 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=103.8
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
..||+++|.+|||||||++++..... ...+.++.-+.....+.+++. .+.||||+|.+ ++......+
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e---------~~~~~~~~~ 73 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP---------YYDNVRPLS 73 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCch---------hhHhhhhhh
Confidence 35899999999999999999998763 233333333333344556654 78899999975 344445667
Q ss_pred hhcCCEEEEEEeCCCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCC------------ccc-----hhHH-hcCC
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINS------------SIS-----LDFY-ELGI 137 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~D~~~~------------~~~-----~~~~-~~~~ 137 (1250)
++++|++|+|+|.+++.+... ..|...+++ .+.|+++|+||+|+.+. ..+ .++. ..+.
T Consensus 74 ~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 153 (182)
T cd04172 74 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA 153 (182)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 899999999999987533332 234444443 35799999999998541 112 2222 3443
Q ss_pred CCcEecccccCCc-hhHHHHHHHHh
Q psy17091 138 GNPHIISALYGNG-IKNFLENILTI 161 (1250)
Q Consensus 138 ~~~~~iSA~~g~g-i~~L~~~i~~~ 161 (1250)
...+++||++|.| ++++|+.+.+.
T Consensus 154 ~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 154 ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CEEEECCcCCCCCCHHHHHHHHHHH
Confidence 3689999999998 99999998763
No 417
>KOG0394|consensus
Probab=99.63 E-value=1.7e-15 Score=149.41 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=114.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
-||+++|.+|||||||+|+++.++.+ ......+..|...+.+.++++ .++||||+|++ +|...-...+
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~-~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQE---------RFqsLg~aFY 79 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFS-QQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQE---------RFQSLGVAFY 79 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHH-HHhccccchhheeeEEEEcCeEEEEEEEecccHH---------Hhhhccccee
Confidence 38999999999999999999988754 445556677788888888875 77899999975 7777778889
Q ss_pred hcCCEEEEEEeCCCCCChh--hHHHHHHHHh------cCCCEEEEEeCCCCCCCc--cc-----hhHH-hcCCCCcEecc
Q psy17091 81 IESDIIIFIVDGRQGLVEQ--DKLITNFLRK------SGQPIVLVINKSENINSS--IS-----LDFY-ELGIGNPHIIS 144 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~--~~~~~~~l~~------~~~p~ilv~NK~D~~~~~--~~-----~~~~-~~~~~~~~~iS 144 (1250)
+.||++++|+|....-+.. +..-.++|.. ...|.|+++||+|..... .+ .++. ..|.-+.|++|
T Consensus 80 RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtS 159 (210)
T KOG0394|consen 80 RGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETS 159 (210)
T ss_pred cCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEec
Confidence 9999999999987532222 1112223332 235899999999997643 22 2333 55666889999
Q ss_pred cccCCchhHHHHHHHHhhCCc
Q psy17091 145 ALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 145 A~~g~gi~~L~~~i~~~l~~~ 165 (1250)
||...|+.+.|+.+....-..
T Consensus 160 AK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 160 AKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred ccccccHHHHHHHHHHHHHhc
Confidence 999999999999998765444
No 418
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.63 E-value=4.4e-15 Score=153.48 Aligned_cols=144 Identities=22% Similarity=0.286 Sum_probs=100.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
||+++|.+|||||||+|++++...... .+ |.......+.+.+..+.+|||||.. .+......++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT--IP--TIGFNVETVEYKNVSFTVWDVGGQD---------KIRPLWKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC--CC--CcCcceEEEEECCEEEEEEECCCCh---------hhHHHHHHHhccC
Confidence 589999999999999999998873322 22 2223334456678899999999975 2334455677899
Q ss_pred CEEEEEEeCCCCCC--hhhHHHHHHHH---hcCCCEEEEEeCCCCCCCccc---hhHHhc-----CCCCcEecccccCCc
Q psy17091 84 DIIIFIVDGRQGLV--EQDKLITNFLR---KSGQPIVLVINKSENINSSIS---LDFYEL-----GIGNPHIISALYGNG 150 (1250)
Q Consensus 84 d~il~v~D~~~~~~--~~~~~~~~~l~---~~~~p~ilv~NK~D~~~~~~~---~~~~~~-----~~~~~~~iSA~~g~g 150 (1250)
|++++|+|++++.. .....+..++. ..+.|+++|+||+|+...... .+.+.. ...+++++||++|.|
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 99999999987421 11122233333 247899999999998765422 222211 122578999999999
Q ss_pred hhHHHHHHHH
Q psy17091 151 IKNFLENILT 160 (1250)
Q Consensus 151 i~~L~~~i~~ 160 (1250)
++++++.|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 419
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.63 E-value=5.4e-15 Score=156.50 Aligned_cols=155 Identities=20% Similarity=0.246 Sum_probs=105.6
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
.||+++|.+|||||||++++++... ...+.+|+.+.....+.+++. .+.+|||||+.+ +.... ..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~-~~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE----------YSILP-QK 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHh----------hHHHH-HH
Confidence 5899999999999999999997643 233444555444455566553 568899999843 22221 24
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEEee
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
++..+|++++|+|.++..+.+... ++..+.+ .+.|+++|+||+|+....... +....+.+.+. .+++++|
T Consensus 69 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~S 144 (180)
T cd04137 69 YSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG----AAFLESS 144 (180)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC----CeEEEEe
Confidence 567899999999999864443332 2333332 468999999999997533221 11222333222 6899999
Q ss_pred cCCCCChHHHHHHHHHHHhh
Q psy17091 335 AIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (1250)
|++|.|+++++.++.+.+..
T Consensus 145 a~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 145 ARENENVEEAFELLIEEIEK 164 (180)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999776543
No 420
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=7.3e-15 Score=153.97 Aligned_cols=151 Identities=16% Similarity=0.093 Sum_probs=105.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHH-HHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMT-KQTKQ 78 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~-~~~~~ 78 (1250)
..+|+++|.+|||||||++++++.... ....++.+.+.....+.+++ ..+.+|||||.. ++. .....
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 71 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP-ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE---------RFRKSMVQH 71 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CccccceeEEEEEEEEEECCeEEEEEEEeCCChH---------HHHHhhHHH
Confidence 358999999999999999999976632 23344455555555666666 578999999964 222 23455
Q ss_pred HhhcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHHhcCCCCcEeccccc-
Q psy17091 79 AIIESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALY- 147 (1250)
Q Consensus 79 ~~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~~~~~~~~~~iSA~~- 147 (1250)
+++++|++++|+|.+++.+... ..|.+.+.. .+.|+++|+||+|+...... .++.....-+++++||++
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 151 (170)
T cd04115 72 YYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDP 151 (170)
T ss_pred hhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCC
Confidence 6789999999999987433322 223333333 35899999999998755433 223322223689999999
Q ss_pred --CCchhHHHHHHHHhh
Q psy17091 148 --GNGIKNFLENILTIE 162 (1250)
Q Consensus 148 --g~gi~~L~~~i~~~l 162 (1250)
+.|+++++..+.+.+
T Consensus 152 ~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 152 SENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 889999999887654
No 421
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.63 E-value=6.7e-15 Score=155.66 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=104.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|.+|||||||++++++.... ....|++..+.....+..++ ..+.+|||+|.. ++......+++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~---------~~~~~~~~~~~ 71 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR---------EFINMLPLVCN 71 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCch---------hHHHhhHHHCc
Confidence 7999999999999999999987632 23345444566555667776 468899999975 34445566789
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCC----cc--c----hhHH-hcCCCCcEecccc
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINS----SI--S----LDFY-ELGIGNPHIISAL 146 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~----~~--~----~~~~-~~~~~~~~~iSA~ 146 (1250)
++|++++|+|.++..+..+ ..|...++. ...| ++|+||+|+... .. . .++. ..+ .+++++||+
T Consensus 72 ~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk 149 (182)
T cd04128 72 DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTS 149 (182)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCC
Confidence 9999999999987433322 123333433 2345 689999998531 11 1 1222 223 367999999
Q ss_pred cCCchhHHHHHHHHhhCC
Q psy17091 147 YGNGIKNFLENILTIELP 164 (1250)
Q Consensus 147 ~g~gi~~L~~~i~~~l~~ 164 (1250)
+|.|++++++.+.+.+.+
T Consensus 150 ~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 150 HSINVQKIFKIVLAKAFD 167 (182)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999887653
No 422
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.63 E-value=6.6e-15 Score=151.58 Aligned_cols=147 Identities=20% Similarity=0.139 Sum_probs=104.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++...... ..+.++.+.....+...+ ..+.+|||||.. .+......++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~ 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE---------RFRSITPSYY 70 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChH---------HHHHHHHHHh
Confidence 4799999999999999999998875422 334444445444555533 688999999964 4445667778
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHhc---CCCEEEEEeCCCCCCCccc-----hhHHhcCCCCcEecccccCCch
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRKS---GQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~~---~~p~ilv~NK~D~~~~~~~-----~~~~~~~~~~~~~iSA~~g~gi 151 (1250)
+++|++++|+|.++..+... ..+...+... +.|+++|+||+|+...... .++......+++.+||+++.|+
T Consensus 71 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 150 (159)
T cd00154 71 RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENV 150 (159)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 89999999999987322111 2244444443 4899999999999633222 3333333347899999999999
Q ss_pred hHHHHHHH
Q psy17091 152 KNFLENIL 159 (1250)
Q Consensus 152 ~~L~~~i~ 159 (1250)
+++++.+.
T Consensus 151 ~~~~~~i~ 158 (159)
T cd00154 151 EELFQSLA 158 (159)
T ss_pred HHHHHHHh
Confidence 99999875
No 423
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.63 E-value=1.7e-15 Score=182.28 Aligned_cols=155 Identities=25% Similarity=0.283 Sum_probs=116.3
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceecc--------------------------------CCCCcceeeEEEEEEE
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITY--------------------------------DTPGTTRDSIKSLFEY 227 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~--------------------------------~~~gtT~~~~~~~~~~ 227 (1250)
+..++|+++|++|+|||||+++|+.....+.. ...|+|.+.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34699999999999999999999855433221 1246778887788888
Q ss_pred cCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcC-CcEEEEEeccccC
Q psy17091 228 NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESG-RSLIVCVNKWDSI 306 (1250)
Q Consensus 228 ~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~-~p~iiv~NK~Dl~ 306 (1250)
++.++.+|||||+. .|.. .....+..+|++++|+|++.++..++...+..+...+ +|+|+|+||+|+.
T Consensus 105 ~~~~i~~iDTPGh~----------~f~~-~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~ 173 (474)
T PRK05124 105 EKRKFIIADTPGHE----------QYTR-NMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLV 173 (474)
T ss_pred CCcEEEEEECCCcH----------HHHH-HHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccc
Confidence 89999999999983 2322 2334568999999999999999888887777776666 4689999999997
Q ss_pred Cc--cchHHHHHHHHHHhcc---CCCCeEEEeecCCCCChHHHH
Q psy17091 307 IH--NQRKIIKNNIKKKLNF---LSFAMFNFISAIKLNNINSFM 345 (1250)
Q Consensus 307 ~~--~~~~~~~~~l~~~l~~---~~~~~iv~iSA~~g~gv~~l~ 345 (1250)
+. ....+..+++...+.. ....+++++||++|.|++++.
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 42 2234444555443332 335789999999999998764
No 424
>PLN03108 Rab family protein; Provisional
Probab=99.63 E-value=9.9e-15 Score=158.24 Aligned_cols=155 Identities=19% Similarity=0.143 Sum_probs=106.3
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+|+|.+|||||||+|+|++.+.... ..+.++.+.....+.+++. .+.+|||||.. .+... ..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~-~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~----------~~~~~-~~ 73 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSI-TR 73 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHH-HH
Confidence 58999999999999999999997654332 3344444444455566664 46789999983 33222 23
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|+++..+.+.. .++..+.. .+.|+++|+||+|+.+.... .+..+.+.+.. ..+++++|
T Consensus 74 ~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~e~S 149 (210)
T PLN03108 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH----GLIFMEAS 149 (210)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHc----CCEEEEEe
Confidence 566889999999999986554443 23333332 36899999999999754322 11222222222 35899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINHVY 352 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~ 352 (1250)
|++|.|++++|+++.+.+
T Consensus 150 a~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 150 AKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998886654
No 425
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.63 E-value=2.9e-15 Score=153.92 Aligned_cols=152 Identities=29% Similarity=0.332 Sum_probs=102.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|+|||||+|+|++.. ......+++|.+.....+..++ ..+.+|||||+.... .+......++...+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYR--AIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccch--HHHHHHHhhhhEEE
Confidence 589999999999999999999988 5677888999998888788888 788999999965322 11122222222333
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHHhcCCCCcEecccccCCchhHHHH
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFYELGIGNPHIISALYGNGIKNFLE 156 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~~~~~~~~~~iSA~~g~gi~~L~~ 156 (1250)
...|++++|.|...........+.+.+.. +.|+++|+||+|+...... ..+...+..+++++||++|.|+.++++
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~ 157 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFK 157 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHH
Confidence 33444444333333221222223333322 7899999999999764322 222344455789999999999999998
Q ss_pred HH
Q psy17091 157 NI 158 (1250)
Q Consensus 157 ~i 158 (1250)
.+
T Consensus 158 ~l 159 (161)
T TIGR00231 158 IV 159 (161)
T ss_pred Hh
Confidence 76
No 426
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.62 E-value=3.1e-15 Score=155.94 Aligned_cols=148 Identities=21% Similarity=0.256 Sum_probs=102.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+++|.+|||||||+++++.... ...+++++.......+.+++. .+.+|||||..... ......+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD--------TEQLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc--------cchHHHHHH
Confidence 589999999999999999987552 445555554444455566665 57899999976311 112334578
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccC-
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG- 148 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g- 148 (1250)
.+|++++|+|.+++.+... ..+..++.. .+.|+++|+||+|+...... ..+. ..+ .+++++||++|
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~ 149 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-CLFFEVSAAEDY 149 (165)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-CEEEEeCCCCCc
Confidence 8999999999987533221 224444443 36899999999998654332 1222 234 36789999999
Q ss_pred CchhHHHHHHHHhh
Q psy17091 149 NGIKNFLENILTIE 162 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l 162 (1250)
.|++++++.+.+.+
T Consensus 150 ~~v~~~f~~l~~~~ 163 (165)
T cd04146 150 DGVHSVFHELCREV 163 (165)
T ss_pred hhHHHHHHHHHHHH
Confidence 59999999998654
No 427
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.62 E-value=6.9e-15 Score=159.35 Aligned_cols=157 Identities=11% Similarity=0.158 Sum_probs=106.0
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+||+++|.+|||||||++++.+.... ..+.+|..+.....+.+++. .+.+|||+|. +.|...+. .
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~--~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~----------e~~~~l~~-~ 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP--GSYVPTVFENYTASFEIDKRRIELNMWDTSGS----------SYYDNVRP-L 68 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CccCCccccceEEEEEECCEEEEEEEEeCCCc----------HHHHHHhH-H
Confidence 78999999999999999999976532 23334444444455666665 4667999998 33433333 3
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-H-HHHHHHH--cCCcEEEEEeccccCCccc-hH---------HHHHHHHHHhccCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-N-IANFIYE--SGRSLIVCVNKWDSIIHNQ-RK---------IIKNNIKKKLNFLS 326 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~-~~~~~~~--~~~p~iiv~NK~Dl~~~~~-~~---------~~~~~l~~~l~~~~ 326 (1250)
+++.+|++++|+|.++..+.+.. . +...+.+ .+.|+++|+||+|+.+... .. ...++........+
T Consensus 69 ~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~ 148 (222)
T cd04173 69 AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG 148 (222)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC
Confidence 67899999999999987555544 2 2222322 4689999999999964211 00 11122223333334
Q ss_pred CCeEEEeecCCCCC-hHHHHHHHHHHH
Q psy17091 327 FAMFNFISAIKLNN-INSFMESINHVY 352 (1250)
Q Consensus 327 ~~~iv~iSA~~g~g-v~~l~~~i~~~~ 352 (1250)
..+++++||+++.+ |+++|..+....
T Consensus 149 ~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 149 AVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred CCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 45899999999985 999999887654
No 428
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.62 E-value=5.7e-15 Score=154.44 Aligned_cols=149 Identities=17% Similarity=0.158 Sum_probs=104.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||++++.+... ...+.+++.+.....+.+++ ..+.+|||||+. ++......++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTE---------QFTAMRELYI 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcc---------cchhhhHHHH
Confidence 4899999999999999999997763 33444445444445555655 477899999976 3334555667
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHH----hcCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLR----KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~----~~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..++++++|+|.+++.+-.. ..+...+. ..+.|+++|+||+|+...... ..+. ..+..+.+++||++|.
T Consensus 71 ~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 150 (168)
T cd04177 71 KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRT 150 (168)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCC
Confidence 89999999999886422222 22333332 246899999999998654432 1111 2333468999999999
Q ss_pred chhHHHHHHHHhh
Q psy17091 150 GIKNFLENILTIE 162 (1250)
Q Consensus 150 gi~~L~~~i~~~l 162 (1250)
|++++++++.+.+
T Consensus 151 ~i~~~f~~i~~~~ 163 (168)
T cd04177 151 NVDEVFIDLVRQI 163 (168)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 429
>KOG0080|consensus
Probab=99.62 E-value=2.7e-15 Score=143.77 Aligned_cols=154 Identities=19% Similarity=0.119 Sum_probs=114.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCC-cceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPG-LTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~-~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
.||.+||.+|||||||+-+++..... ...|. +..|.....+.++|. .+.||||+|++ +|+..+..+
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqE---------rFRtLTpSy 80 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQE---------RFRTLTPSY 80 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcCceEEEEEEeccchH---------hhhccCHhH
Confidence 58999999999999999999977532 22232 557888888888775 78899999976 888999999
Q ss_pred hhcCCEEEEEEeCCCCCChhhH-HHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHHhcCCCCcEecccccCC
Q psy17091 80 IIESDIIIFIVDGRQGLVEQDK-LITNFLRK----SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGN 149 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~~-~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~~~~~~~~~~iSA~~g~ 149 (1250)
++.|.++|+|+|.+.+.+.... .|++.+.. .++-.++|+||+|......+ ..|.+....-.++.||++.+
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRE 160 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhc
Confidence 9999999999999875443332 23333332 23456799999997644433 34443333356899999999
Q ss_pred chhHHHHHHHHhhCCccc
Q psy17091 150 GIKNFLENILTIELPYKK 167 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~~~~ 167 (1250)
|+...|+.++..+.+.+.
T Consensus 161 ~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIETPS 178 (209)
T ss_pred cHHHHHHHHHHHHhcCcc
Confidence 999999999887765543
No 430
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.62 E-value=4.1e-15 Score=156.40 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=100.9
Q ss_pred EEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 5 I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
|+++|.+|||||||++++++.... ..+.+++.+.....+..++. .+.+|||||.... ......++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY---------DRLRPLSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc---------chhchhhcCC
Confidence 689999999999999999987642 22333333333444555554 6889999997632 2233446789
Q ss_pred CCEEEEEEeCCCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCCcc------------c-----hhHH-hcCCCCc
Q psy17091 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDFY-ELGIGNP 140 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~D~~~~~~------------~-----~~~~-~~~~~~~ 140 (1250)
+|++|+|+|.++..+-.. ..|...+.. .+.|+++|+||+|+..... . .++. ..+...+
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKY 149 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEE
Confidence 999999999987432222 123344433 3789999999999865321 1 1122 3444467
Q ss_pred EecccccCCchhHHHHHHHHhh
Q psy17091 141 HIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 141 ~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
+++||++|.|++++++.+.+.+
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998654
No 431
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.62 E-value=7.5e-15 Score=160.24 Aligned_cols=153 Identities=15% Similarity=0.173 Sum_probs=102.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcc-eeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTT-RDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT-~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
+||+++|.+|||||||++++++...... .++.+. .+.....+.+++ ..+.+|||||+. .+. . .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~----------~~~--~-~ 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDH-AYDASGDDDTYERTVSVDGEESTLVVIDHWEQE----------MWT--E-D 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCcc-CcCCCccccceEEEEEECCEEEEEEEEeCCCcc----------hHH--H-h
Confidence 4899999999999999999976544311 222221 244444555544 567889999994 111 1 1
Q ss_pred Hhhc-cCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEE
Q psy17091 260 KSIL-EANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 260 ~~~~-~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~ 332 (1250)
.+++ .+|++++|+|+++..+.... .++..+.+ .++|+|+|+||+|+.+..... +..+.+.... ..++++
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~----~~~~~e 142 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVF----DCKFIE 142 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHc----CCeEEE
Confidence 2345 89999999999987544332 34444444 368999999999997543221 1122222222 358999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q psy17091 333 ISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+||++|.|++++|+++...+.
T Consensus 143 ~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 143 TSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987764
No 432
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.62 E-value=7.6e-15 Score=154.27 Aligned_cols=147 Identities=20% Similarity=0.184 Sum_probs=101.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+.+++.... ...+.+++.+.....+..++ ..+.+|||||.. .+......++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE---------DYDRLRPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCch---------hhhhhhhhhc
Confidence 4799999999999999999997653 23333333343333445555 478899999975 3334445578
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCcc------------c-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~D~~~~~~------------~-----~~~~-~~~~~ 138 (1250)
.++|++|+|+|.+++.+.... .|...+.. .+.|+++|+||+|+.+... . .++. ..+..
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 150 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 150 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence 899999999999874333221 23333333 3579999999999864321 1 1122 23333
Q ss_pred CcEecccccCCchhHHHHHHHH
Q psy17091 139 NPHIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~ 160 (1250)
.++++||++|.|++++++.+.+
T Consensus 151 ~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 151 KYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred EEEEecccccCCHHHHHHHHHH
Confidence 6789999999999999999875
No 433
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.62 E-value=7.2e-15 Score=159.13 Aligned_cols=147 Identities=19% Similarity=0.163 Sum_probs=101.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|+++|.+|||||||+++++..+.. ...|.+..+. ....+....+.||||||... +......+++.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~--~~~~Tig~~~--~~~~~~~~~l~iwDt~G~e~---------~~~l~~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK--DTVSTVGGAF--YLKQWGPYNISIWDTAGREQ---------FHGLGSMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CCCCccceEE--EEEEeeEEEEEEEeCCCccc---------chhhHHHHhccC
Confidence 7999999999999999999987743 2334333333 23345567899999999752 333445568899
Q ss_pred CEEEEEEeCCCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCC-------------------Cccc-----hhHH-h
Q psy17091 84 DIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENIN-------------------SSIS-----LDFY-E 134 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~D~~~-------------------~~~~-----~~~~-~ 134 (1250)
|++|+|+|.++..+.... .+..+.+. .+.|+++|+||+|+.+ ...+ ..+. +
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 999999999875333321 23333322 3579999999999865 1121 1222 2
Q ss_pred cCC-------------CCcEecccccCCchhHHHHHHHHhhC
Q psy17091 135 LGI-------------GNPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 135 ~~~-------------~~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
.+. ..++++||++|.|++++++.+.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 220 25789999999999999999987654
No 434
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.62 E-value=2.3e-15 Score=178.61 Aligned_cols=152 Identities=26% Similarity=0.311 Sum_probs=114.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceec--------------------------------cCCCCcceeeEEEEEEEcCe
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVIT--------------------------------YDTPGTTRDSIKSLFEYNNK 230 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~--------------------------------~~~~gtT~~~~~~~~~~~~~ 230 (1250)
++|+++|++++|||||+++|+.....+. ....|+|++.....+++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 4799999999999999999974332211 11347889998889999999
Q ss_pred eEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCC-cEEEEEeccccCCcc
Q psy17091 231 KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR-SLIVCVNKWDSIIHN 309 (1250)
Q Consensus 231 ~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~-p~iiv~NK~Dl~~~~ 309 (1250)
++.+|||||+ +.|. ......+..+|++++|+|++.++..++.+.+..+...+. ++++|+||+|+.+..
T Consensus 81 ~~~liDtPGh----------~~f~-~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~ 149 (406)
T TIGR02034 81 KFIVADTPGH----------EQYT-RNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD 149 (406)
T ss_pred EEEEEeCCCH----------HHHH-HHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch
Confidence 9999999998 3332 223356789999999999999999999888888877766 488899999997532
Q ss_pred --chHHHHHHHHHHhccC--CCCeEEEeecCCCCChHHHH
Q psy17091 310 --QRKIIKNNIKKKLNFL--SFAMFNFISAIKLNNINSFM 345 (1250)
Q Consensus 310 --~~~~~~~~l~~~l~~~--~~~~iv~iSA~~g~gv~~l~ 345 (1250)
...+..+++...+... ...+++++||++|.|++++.
T Consensus 150 ~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~ 189 (406)
T TIGR02034 150 EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRS 189 (406)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcccc
Confidence 2233444444433322 24689999999999998653
No 435
>KOG1490|consensus
Probab=99.62 E-value=1.8e-15 Score=169.98 Aligned_cols=193 Identities=18% Similarity=0.195 Sum_probs=149.7
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
.-.+.++|.|||||||++|.++..+ ..+.++++||+....+.+.++-..++++||||+.+....+.+..++....++.+
T Consensus 168 trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 4679999999999999999988766 455699999999999999888889999999999998877777888888889999
Q ss_pred hccCcEEEEEecCCC--CCC-HHHHHHHHHHHH--cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 262 ILEANVVILLLDAQQ--NIS-AQDINIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 262 ~~~ad~vllviD~~~--~~~-~~d~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
++.| |+|++|.|. |.+ .+...++..+.. .++|+|+|+||+|+...+.+.+..+++-+.+...+.++++.+|..
T Consensus 247 Lraa--VLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~ 324 (620)
T KOG1490|consen 247 LRSA--VLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCV 324 (620)
T ss_pred hhhh--heeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEeccc
Confidence 9977 888888775 555 345567777765 589999999999999877766656566555555566899999999
Q ss_pred CCCChHHHHHHHHHHHhhcc--cccChhHHH-HHHHHHHHcCCC
Q psy17091 337 KLNNINSFMESINHVYDSSI--IHLSTSRIT-RALISAIKNHPP 377 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~~~--~~~~~~~l~-~~l~~~~~~~~~ 377 (1250)
+.+|+.++....++.+-... .+......+ ..+.......|.
T Consensus 325 ~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr~hvA~p~ 368 (620)
T KOG1490|consen 325 QEEGVMDVRTTACEALLAARVEQKLKSESRVNNVLNRIHLAEPA 368 (620)
T ss_pred chhceeeHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCC
Confidence 99999999887776644332 233333333 555544444443
No 436
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.62 E-value=4.9e-15 Score=181.83 Aligned_cols=145 Identities=21% Similarity=0.198 Sum_probs=112.6
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceec---------------cCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVIT---------------YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFE 248 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~---------------~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 248 (1250)
+|+|+|+.++|||||+++|+.....+. ....|+|.......+.|++.++.+|||||+.++
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF----- 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF----- 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH-----
Confidence 699999999999999999985321111 124588998888899999999999999999443
Q ss_pred hHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccC---
Q psy17091 249 VIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL--- 325 (1250)
Q Consensus 249 ~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~--- 325 (1250)
. .....+++.+|++++|+|++++...+...++..+.+.++|+++|+||+|+.+. ...+..+++.+.+..+
T Consensus 78 -----~-~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a-~~~~v~~ei~~l~~~~g~~ 150 (594)
T TIGR01394 78 -----G-GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSA-RPDEVVDEVFDLFAELGAD 150 (594)
T ss_pred -----H-HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCc-CHHHHHHHHHHHHHhhccc
Confidence 2 23346778899999999999999999999999999999999999999998643 2333344444444211
Q ss_pred ---CCCeEEEeecCCCCC
Q psy17091 326 ---SFAMFNFISAIKLNN 340 (1250)
Q Consensus 326 ---~~~~iv~iSA~~g~g 340 (1250)
...|++++||++|.+
T Consensus 151 ~e~l~~pvl~~SA~~g~~ 168 (594)
T TIGR01394 151 DEQLDFPIVYASGRAGWA 168 (594)
T ss_pred cccccCcEEechhhcCcc
Confidence 135899999999974
No 437
>PLN03108 Rab family protein; Provisional
Probab=99.62 E-value=1.4e-14 Score=157.06 Aligned_cols=151 Identities=18% Similarity=0.110 Sum_probs=108.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.+.. ....|+++.+.....+.+++. .+.+|||||.. .+..+...++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~-~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~---------~~~~~~~~~~ 76 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE---------SFRSITRSYY 76 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH---------HHHHHHHHHh
Confidence 58999999999999999999987643 233455556665666667664 67899999964 3445566678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|.++..+... ..+...+.. ...|+++|+||+|+.+.... .++. ..+. +++++||+++.|
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 155 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAKTAQN 155 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999986432222 122222222 36799999999998764332 2233 3344 689999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++++.+.+..
T Consensus 156 v~e~f~~l~~~~~~ 169 (210)
T PLN03108 156 VEEAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876643
No 438
>PRK10218 GTP-binding protein; Provisional
Probab=99.62 E-value=7e-15 Score=179.97 Aligned_cols=148 Identities=19% Similarity=0.187 Sum_probs=115.2
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceec---------------cCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcc
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVIT---------------YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~---------------~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 246 (1250)
-.+|+|+|+.++|||||+++|+.....+. ....|+|.......+.+++.++.+|||||+.++.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG-- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH--
Confidence 35799999999999999999996322211 1246888888888899999999999999996542
Q ss_pred hhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccC-
Q psy17091 247 FEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL- 325 (1250)
Q Consensus 247 ~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~- 325 (1250)
.....+++.+|++++|+|++++...++..++..+.+.++|.++|+||+|+... ......+++...+..+
T Consensus 83 ---------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a-~~~~vl~ei~~l~~~l~ 152 (607)
T PRK10218 83 ---------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGA-RPDWVVDQVFDLFVNLD 152 (607)
T ss_pred ---------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCC-chhHHHHHHHHHHhccC
Confidence 12345678999999999999999999999999999999999999999998643 2333444444443211
Q ss_pred -----CCCeEEEeecCCCCCh
Q psy17091 326 -----SFAMFNFISAIKLNNI 341 (1250)
Q Consensus 326 -----~~~~iv~iSA~~g~gv 341 (1250)
...|++++||++|.+.
T Consensus 153 ~~~~~~~~PVi~~SA~~G~~~ 173 (607)
T PRK10218 153 ATDEQLDFPIVYASALNGIAG 173 (607)
T ss_pred ccccccCCCEEEeEhhcCccc
Confidence 2368999999999863
No 439
>COG2262 HflX GTPases [General function prediction only]
Probab=99.62 E-value=8.5e-15 Score=163.88 Aligned_cols=163 Identities=26% Similarity=0.348 Sum_probs=125.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc-CeeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.-..|+++|.+|+|||||+|+|++... .+.+..++|.|+....+.+. |.++.|-||-|+.+.- +...++.|. .++
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L-P~~LV~AFk--sTL 266 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL-PHPLVEAFK--STL 266 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcccC-ChHHHHHHH--HHH
Confidence 357899999999999999999998654 44588899999998888887 6899999999997653 445667774 578
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 260 KSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
.....||++++|+|++++.-.+... ....+.+ ..+|+|+|+||+|++.... ....+.... ...+++||
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~-----~~~v~iSA 338 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERGS-----PNPVFISA 338 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhcC-----CCeEEEEe
Confidence 8889999999999999974433333 3333333 4689999999999886543 112222211 15889999
Q ss_pred CCCCChHHHHHHHHHHHhhc
Q psy17091 336 IKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~ 355 (1250)
++|.|++.|.+.|.+.+...
T Consensus 339 ~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 339 KTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred ccCcCHHHHHHHHHHHhhhc
Confidence 99999999999998887643
No 440
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.62 E-value=8.5e-15 Score=156.02 Aligned_cols=151 Identities=15% Similarity=0.100 Sum_probs=103.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC-C--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-K--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
+|+++|.+|||||||+++++++... ....|.+..+. ...+... + ..+.+|||||.+ ++......++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~-~~~i~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 70 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENY-VTNIQGPNGKIIELALWDTAGQE---------EYDRLRPLSY 70 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeee-EEEEEecCCcEEEEEEEECCCch---------hHHHHHHHhC
Confidence 7999999999999999999987642 22233322332 3334443 3 478999999965 3333445568
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCcc----c-----hhHH-hcCCCCcEecccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINSSI----S-----LDFY-ELGIGNPHIISAL 146 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~D~~~~~~----~-----~~~~-~~~~~~~~~iSA~ 146 (1250)
..+|++++|+|.++..+.... .|...+.. .+.|+++|+||+|+..... . .++. ..+..+++++||+
T Consensus 71 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 71 PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence 899999999999874333221 12222322 3689999999999865321 1 2222 3444467999999
Q ss_pred cCCchhHHHHHHHHhhCCc
Q psy17091 147 YGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 147 ~g~gi~~L~~~i~~~l~~~ 165 (1250)
+|.|++++++.+.+.+...
T Consensus 151 ~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 151 TMENVEEVFDTAIEEALKK 169 (187)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999877544
No 441
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.62 E-value=1.1e-14 Score=155.44 Aligned_cols=151 Identities=19% Similarity=0.146 Sum_probs=104.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||++++...... ....|.+ -+.....+.+++ ..+.+|||||.+ ++......++
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~e---------~~~~l~~~~~ 72 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP-KEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQE---------EYDRLRTLSY 72 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-cCCCCce-EeeeEEEEEECCEEEEEEEEECCCch---------hhhhhhhhhc
Confidence 58999999999999999999977532 2223333 233333344555 478899999975 4445566678
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCcc------------c-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~D~~~~~~------------~-----~~~~-~~~~~ 138 (1250)
+++|++|+|+|.++..+-... .|...+.. .+.|+++|+||+|+.+... . .++. ..+..
T Consensus 73 ~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 152 (191)
T cd01875 73 PQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAV 152 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence 999999999999874332221 13333332 4689999999999965421 1 1121 23333
Q ss_pred CcEecccccCCchhHHHHHHHHhhCC
Q psy17091 139 NPHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
.++++||++|.|++++++.+.+.+..
T Consensus 153 ~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 153 KYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 68999999999999999999987654
No 442
>KOG0093|consensus
Probab=99.62 E-value=7e-15 Score=138.81 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=115.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
|.|+.++|.+.|||||++-+.++.... ..-+..+..+.....+.-++ ..+++|||+|++ +++..+-.+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt-~afvsTvGidFKvKTvyr~~kRiklQiwDTagqE---------ryrtiTTay 90 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE---------RYRTITTAY 90 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccc-cceeeeeeeeEEEeEeeecccEEEEEEEecccch---------hhhHHHHHH
Confidence 569999999999999999999987643 23334455666665554333 478999999976 577778889
Q ss_pred hhcCCEEEEEEeCCCCCChhhHHHHHHHHh------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEeccccc
Q psy17091 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~~~~~~~l~~------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~ 147 (1250)
+++|+++|+++|.+.. ++...+..|... .+.|+|+|.||||+.+...+ ..+. .+|+ +.|++||+.
T Consensus 91 yRgamgfiLmyDitNe--eSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtSaK~ 167 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNE--ESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETSAKE 167 (193)
T ss_pred hhccceEEEEEecCCH--HHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhcccc
Confidence 9999999999999862 223334444432 47899999999999877655 2222 6788 889999999
Q ss_pred CCchhHHHHHHHHhhCCc
Q psy17091 148 GNGIKNFLENILTIELPY 165 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~~ 165 (1250)
+.|++++++.++..+.+.
T Consensus 168 NinVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 168 NINVKQVFERLVDIICDK 185 (193)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999998766543
No 443
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.61 E-value=6.4e-15 Score=158.40 Aligned_cols=149 Identities=21% Similarity=0.225 Sum_probs=104.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|.+|||||||++++++... ...+..++.+.....+.+++ ..+.+|||||... +......++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS---------FPAMRKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCchh---------hhHHHHHHhh
Confidence 589999999999999999998763 33444555555555667777 5788999999752 2233445678
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCC-ccc-----hhHHhcCC-CCcEecccccCC
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINS-SIS-----LDFYELGI-GNPHIISALYGN 149 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~-~~~-----~~~~~~~~-~~~~~iSA~~g~ 149 (1250)
.+|++++|+|++++.+... ..+...+.. .++|+++|+||+|+... ... .+.....+ ..++++||++|.
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 149 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNE 149 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCC
Confidence 9999999999987432222 122222222 46899999999998653 222 11112122 356899999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++++.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (198)
T cd04147 150 NVLEVFKELLRQAN 163 (198)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998765
No 444
>KOG0087|consensus
Probab=99.61 E-value=3.2e-15 Score=151.58 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=117.8
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+.-+||+++|.++||||-|+.+++..++..- ..+.+..+..+..+..+++ +.++|||+|+ |+|....
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~-SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ----------ERyrAit 80 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ----------ERYRAIT 80 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcc-cccceeEEEEeeceeecCcEEEEeeecccch----------hhhcccc
Confidence 4579999999999999999999998765444 4555566666777777776 5678999999 6665333
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
-.+++.|.++++|+|++...|.+.. +++..+++ .++++++|+||+||...... .+..+.+.+. ....+++
T Consensus 81 -SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~----~~l~f~E 155 (222)
T KOG0087|consen 81 -SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK----EGLFFLE 155 (222)
T ss_pred -chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHh----cCceEEE
Confidence 3788999999999999998877654 46666665 47999999999999753221 2222233332 2468999
Q ss_pred eecCCCCChHHHHHHHHHHH
Q psy17091 333 ISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~ 352 (1250)
+||..+.|+++.|..+...+
T Consensus 156 tSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 156 TSALDATNVEKAFERVLTEI 175 (222)
T ss_pred ecccccccHHHHHHHHHHHH
Confidence 99999999999998765543
No 445
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=99.61 E-value=5.5e-16 Score=137.35 Aligned_cols=78 Identities=36% Similarity=0.527 Sum_probs=61.7
Q ss_pred ccChhHHHHHHHHHHHcCCCcccccccceeeccccCCCCCCceEEEeCcCCCccHHHHHHHHHHHHhhhccccccccch
Q psy17091 358 HLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYIGNDYKRYLEKYFYRTFSLIDALEKNI 436 (1250)
Q Consensus 358 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~pp~fvif~n~~~~~~~~y~r~l~~~~r~t~~li~~~~~~~ 436 (1250)
+++|+.||+++++++..++||. +++++|++|++|++++||+|++|+|+++.++++|+|||+|++|+.|++.|+|++..
T Consensus 1 Ri~T~~LN~~l~~~~~~~~pp~-~g~~~Ki~Y~tQv~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~l~ 78 (80)
T PF14714_consen 1 RISTSELNRFLQKALERHPPPS-KGKRLKIYYATQVGTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIRLI 78 (80)
T ss_dssp ---HHHHHHHHHHHHCCS--SE-TTCC--EEEEEEEETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--EEE
T ss_pred CCCHHHHHHHHHHHHHhCCCCC-CCceeEEEEEEeCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEEEE
Confidence 4789999999999999999997 89999999999999999999999999999999999999999999999999998753
No 446
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.61 E-value=2.9e-15 Score=187.97 Aligned_cols=154 Identities=26% Similarity=0.324 Sum_probs=115.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccC----------C----------------------CCcceeeEEEEEEEc
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYD----------T----------------------PGTTRDSIKSLFEYN 228 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~----------~----------------------~gtT~~~~~~~~~~~ 228 (1250)
+.++|+|+|++|+|||||+|+|+.....+.+. . .|+|++.....++++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 46899999999999999999999755444311 2 356666666677888
Q ss_pred CeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcC-CcEEEEEeccccCC
Q psy17091 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESG-RSLIVCVNKWDSII 307 (1250)
Q Consensus 229 ~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~-~p~iiv~NK~Dl~~ 307 (1250)
+.+++++||||+. .|. ......+..+|++++|+|++.++..++...+..+...+ +++++|+||+|+.+
T Consensus 103 ~~~~~liDtPG~~----------~f~-~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 103 KRKFIVADTPGHE----------QYT-RNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred CceEEEEECCChH----------HHH-HHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 8899999999983 332 22334678999999999999999888888888777777 56888999999974
Q ss_pred --ccchHHHHHHHHHHhccC--CCCeEEEeecCCCCChHHHH
Q psy17091 308 --HNQRKIIKNNIKKKLNFL--SFAMFNFISAIKLNNINSFM 345 (1250)
Q Consensus 308 --~~~~~~~~~~l~~~l~~~--~~~~iv~iSA~~g~gv~~l~ 345 (1250)
.....+..+++.+.+... ...+++++||++|.|+++.-
T Consensus 172 ~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~ 213 (632)
T PRK05506 172 YDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRS 213 (632)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccc
Confidence 223344445555444322 33679999999999998653
No 447
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.61 E-value=6.3e-15 Score=182.17 Aligned_cols=150 Identities=25% Similarity=0.393 Sum_probs=117.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC----CEEEEEEecCCCCcchhhHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG----KKSFIIIDTGGFEPEVKKGIMHEMTKQTK 77 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 77 (1250)
.|+|+++|++|+|||||+++|.+...+ ....+|+|.+.....+.+. +..++||||||+. .+.....
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe---------~F~~mr~ 313 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE---------AFSSMRS 313 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHH---------HHHHHHH
Confidence 379999999999999999999987654 4556788877665555552 4799999999964 4556666
Q ss_pred HHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHHh-------cC-CCCcEecccc
Q psy17091 78 QAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYE-------LG-IGNPHIISAL 146 (1250)
Q Consensus 78 ~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~~-------~~-~~~~~~iSA~ 146 (1250)
.++..+|++|+|+|+.++...+..+.+..+...++|+++|+||+|+...... .++.. ++ ..+++++||+
T Consensus 314 rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 314 RGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred HHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 7789999999999999888777777778888889999999999998754321 11111 11 2367999999
Q ss_pred cCCchhHHHHHHHHh
Q psy17091 147 YGNGIKNFLENILTI 161 (1250)
Q Consensus 147 ~g~gi~~L~~~i~~~ 161 (1250)
+|.|+++|++.+...
T Consensus 394 tG~GIdeLle~I~~l 408 (742)
T CHL00189 394 QGTNIDKLLETILLL 408 (742)
T ss_pred CCCCHHHHHHhhhhh
Confidence 999999999998764
No 448
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.61 E-value=1.3e-14 Score=149.93 Aligned_cols=146 Identities=21% Similarity=0.188 Sum_probs=105.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|++|||||||+|++++.. ....+++++.+........++ ..+.+|||||.. .+.......+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQE---------EFSAMRDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHHHh
Confidence 58999999999999999999876 456666667776666666764 478899999965 23344556678
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHHh-cCCCCcEecccccCCc
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFYE-LGIGNPHIISALYGNG 150 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~~-~~~~~~~~iSA~~g~g 150 (1250)
.+|++++|+|..+..+..+ ..+...+.. .+.|+++|+||+|+...... ..+.. .+ .+++++||+++.|
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 148 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSAKDNIN 148 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEeccCCCCC
Confidence 9999999999876322211 122222222 36899999999999764332 22222 23 3789999999999
Q ss_pred hhHHHHHHHHh
Q psy17091 151 IKNFLENILTI 161 (1250)
Q Consensus 151 i~~L~~~i~~~ 161 (1250)
++++++.+.+.
T Consensus 149 i~~l~~~l~~~ 159 (160)
T cd00876 149 IDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 449
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.61 E-value=1.2e-14 Score=179.00 Aligned_cols=155 Identities=23% Similarity=0.263 Sum_probs=115.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCccc--------c------cCCCcceeeeEEEEEEC---C--EEEEEEecCCCCcc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV--------A------NYPGLTRDRHYGEGYIG---K--KSFIIIDTGGFEPE 63 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v--------~------~~~~~T~~~~~~~~~~~---~--~~~~liDTpG~~~~ 63 (1250)
.+|+++|++|+|||||+++|+....++. . ...|+|.+.....+.|. + ..+.||||||+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~-- 81 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-- 81 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH--
Confidence 5799999999999999999986532211 1 22477877766666663 2 689999999986
Q ss_pred hhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHH-hcCC--
Q psy17091 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGI-- 137 (1250)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~-~~~~-- 137 (1250)
.+...+..++..+|++|+|+|++++...........+...+.|+++|+||+|+...... .++. .++.
T Consensus 82 -------dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~ 154 (595)
T TIGR01393 82 -------DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDA 154 (595)
T ss_pred -------HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCc
Confidence 45556677889999999999999987776655444444568899999999998643221 2222 1233
Q ss_pred CCcEecccccCCchhHHHHHHHHhhCCcc
Q psy17091 138 GNPHIISALYGNGIKNFLENILTIELPYK 166 (1250)
Q Consensus 138 ~~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 166 (1250)
.+++++||++|.|+++|++.+.+.++.+.
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 25799999999999999999999887653
No 450
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.61 E-value=4.7e-15 Score=178.01 Aligned_cols=157 Identities=26% Similarity=0.313 Sum_probs=114.8
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCccee------------------------------ccCCCCcceeeEEEEEEEcC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVI------------------------------TYDTPGTTRDSIKSLFEYNN 229 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~------------------------------~~~~~gtT~~~~~~~~~~~~ 229 (1250)
.+.++|+++|++++|||||+++|+.....+ .....|+|.|.....+.+++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 346999999999999999999998422111 01255999999999999999
Q ss_pred eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCC---CCHHHHHHHHHHHHcC-CcEEEEEecccc
Q psy17091 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN---ISAQDINIANFIYESG-RSLIVCVNKWDS 305 (1250)
Q Consensus 230 ~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~---~~~~d~~~~~~~~~~~-~p~iiv~NK~Dl 305 (1250)
..+.+|||||+. .|. ......++.+|++++|+|++++ ...+....+..+...+ .|+++|+||+|+
T Consensus 85 ~~i~iiDtpGh~----------~f~-~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl 153 (426)
T TIGR00483 85 YEVTIVDCPGHR----------DFI-KNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDS 153 (426)
T ss_pred eEEEEEECCCHH----------HHH-HHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhc
Confidence 999999999983 232 2334566889999999999998 4444444444454555 468999999999
Q ss_pred CC--ccchHHHHHHHHHHhccCC----CCeEEEeecCCCCChHHHHHH
Q psy17091 306 II--HNQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINSFMES 347 (1250)
Q Consensus 306 ~~--~~~~~~~~~~l~~~l~~~~----~~~iv~iSA~~g~gv~~l~~~ 347 (1250)
.+ .....+..+++.+.+...+ ..+++++||++|.|+++++..
T Consensus 154 ~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~ 201 (426)
T TIGR00483 154 VNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSEN 201 (426)
T ss_pred cCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccC
Confidence 74 2233444555655554333 368999999999999987653
No 451
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=1.2e-14 Score=151.78 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=100.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEE--CCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI--GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|.+|||||||+|++.+++.. ..++.++.+. ...... .+..+.+|||||... ....+..++.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~ 69 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQ---------DRANLAAEIR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccce-EeeeeecCCeEEEEEEeCCCchh---------hhHHHhhhcc
Confidence 7999999999999999999987642 3344332222 122222 346889999999752 2233444568
Q ss_pred cCCEEEEEEeCCCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCCccc------h-hHH-hc-CCCCcEecccccC
Q psy17091 82 ESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSIS------L-DFY-EL-GIGNPHIISALYG 148 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~D~~~~~~~------~-~~~-~~-~~~~~~~iSA~~g 148 (1250)
.+|++++|+|.+++.+... ..|...++. .+.|+++|+||+|+.+.... . .+. .. ....++++||++|
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 149 (166)
T cd01893 70 KANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTL 149 (166)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccc
Confidence 9999999999987544333 234444543 36899999999999764431 1 111 11 2236789999999
Q ss_pred CchhHHHHHHHHhh
Q psy17091 149 NGIKNFLENILTIE 162 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l 162 (1250)
.|++++++.+.+.+
T Consensus 150 ~~v~~lf~~~~~~~ 163 (166)
T cd01893 150 INVSEVFYYAQKAV 163 (166)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 452
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.61 E-value=8.6e-15 Score=153.89 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=104.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|.+|||||||++++.+.. +...+++++.+.....+.+++ ..+.+|||||+.. +......+++
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE---------FDKLRPLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChh---------hccccccccC
Confidence 79999999999999999998765 345566666666555666666 4778999999752 2233344678
Q ss_pred cCCEEEEEEeCCCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCCc------------cc-----hhHH-hcCCCC
Q psy17091 82 ESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSS------------IS-----LDFY-ELGIGN 139 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~D~~~~~------------~~-----~~~~-~~~~~~ 139 (1250)
.+|++|+|+|.+++.+... ..|...++. .+.|+++|+||+|+.... .. ..+. ..+...
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 150 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence 9999999999987533322 234444443 468999999999986432 11 1222 334457
Q ss_pred cEecccccCCchhHHHHHHH
Q psy17091 140 PHIISALYGNGIKNFLENIL 159 (1250)
Q Consensus 140 ~~~iSA~~g~gi~~L~~~i~ 159 (1250)
++++||++|.|++++++.+.
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 89999999999999999875
No 453
>KOG1489|consensus
Probab=99.61 E-value=2.8e-15 Score=160.48 Aligned_cols=155 Identities=23% Similarity=0.271 Sum_probs=118.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE-EEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.-|.+||.||+|||||+|+|+..+.. +.++++||..++.+.+.+++. ++++-|.||+.... .+.+-+--.++..++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpk-Va~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA--h~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPK-VAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA--HMNKGLGYKFLRHIE 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCc-ccccceeeeccccceeeccccceeEeccCccccccc--cccCcccHHHHHHHH
Confidence 56899999999999999999998874 999999999999999888776 49999999987543 222344556777789
Q ss_pred cCCEEEEEEeCCCCC--Chhh--HHHHHHHHh-----cCCCEEEEEeCCCCCCCccc--hhHH-hcCCCCcEecccccCC
Q psy17091 82 ESDIIIFIVDGRQGL--VEQD--KLITNFLRK-----SGQPIVLVINKSENINSSIS--LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~--~~~~--~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~--~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
.++.++||+|.+.+. ++.. ..+...|+. ..+|.++|+||+|+.+.+.. .++. .+....++++||++++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeecccc
Confidence 999999999998651 2222 224444443 45799999999999654433 2333 3444458999999999
Q ss_pred chhHHHHHHHH
Q psy17091 150 GIKNFLENILT 160 (1250)
Q Consensus 150 gi~~L~~~i~~ 160 (1250)
|+.+|++.+-.
T Consensus 354 gl~~ll~~lr~ 364 (366)
T KOG1489|consen 354 GLEELLNGLRE 364 (366)
T ss_pred chHHHHHHHhh
Confidence 99999988754
No 454
>KOG0095|consensus
Probab=99.61 E-value=6.2e-15 Score=139.10 Aligned_cols=153 Identities=18% Similarity=0.084 Sum_probs=115.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
.++|++||..|||||.|+.+++..-.. -+.-..+..|.....++++|. .+++|||+|++ +|+..+..+
T Consensus 7 lfkivlvgnagvgktclvrrftqglfp-pgqgatigvdfmiktvev~gekiklqiwdtagqe---------rfrsitqsy 76 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQE---------RFRSITQSY 76 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCC-CCCCceeeeeEEEEEEEECCeEEEEEEeeccchH---------HHHHHHHHH
Confidence 469999999999999999999966422 233344567888888888875 78899999965 888899999
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHHhcCCCCcEecccccCCc
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGNG 150 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~~~~~~~~~~iSA~~g~g 150 (1250)
++.|+.+++|+|.+...+... .+|+..+.. .+.--|+|+||+|+.+..++ .+|.+....-.+.+||+...|
T Consensus 77 yrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~n 156 (213)
T KOG0095|consen 77 YRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADN 156 (213)
T ss_pred hhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhh
Confidence 999999999999986433322 234333333 23346799999999877665 455554444457899999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++.|+..+.-.+..
T Consensus 157 ve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 157 VEKLFLDLACRLIS 170 (213)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998766543
No 455
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.61 E-value=8.3e-15 Score=180.49 Aligned_cols=152 Identities=20% Similarity=0.233 Sum_probs=122.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCC--cccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRD--ALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~--~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.|+++|++|+|||||+|+|++... ......+|+|.+.....+.+++..+.+|||||+. .+...+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe---------~f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE---------KFISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH---------HHHHHHHhhhc
Confidence 589999999999999999997542 1133467899999888888888999999999964 56677778889
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCccc-------hhHH-hcC---CCCcEecccccCC
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS-------LDFY-ELG---IGNPHIISALYGN 149 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~D~~~~~~~-------~~~~-~~~---~~~~~~iSA~~g~ 149 (1250)
++|++++|+|++++...+..+...+++..++| +++|+||+|+.+.... .++. ..+ ..+++++||++|.
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 99999999999998877777777788888888 9999999999765422 1222 222 2368999999999
Q ss_pred chhHHHHHHHHhhCC
Q psy17091 150 GIKNFLENILTIELP 164 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~ 164 (1250)
|++++++.+...+..
T Consensus 153 GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 153 GIGELKKELKNLLES 167 (581)
T ss_pred CchhHHHHHHHHHHh
Confidence 999999998776543
No 456
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.61 E-value=9.6e-15 Score=156.14 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=101.2
Q ss_pred EeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccC
Q psy17091 188 VGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEA 265 (1250)
Q Consensus 188 vG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~a 265 (1250)
+|.+|||||||+++++..... ....|.+..+.....+.+++ ..+.+|||||. ++|..... .+++.+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~----------e~~~~l~~-~~~~~a 68 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQ----------EKFGGLRD-GYYIQG 68 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhH-HHhcCC
Confidence 599999999999999965432 11122222333334445544 47788999999 33433332 577999
Q ss_pred cEEEEEecCCCCCCHHHHH-HHHHHHH--cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChH
Q psy17091 266 NVVILLLDAQQNISAQDIN-IANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (1250)
Q Consensus 266 d~vllviD~~~~~~~~d~~-~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~ 342 (1250)
|++++|+|+++..+.+... +...+.+ .+.|+++|+||+|+.......+.. .+.+. ...+++++||++|.||+
T Consensus 69 d~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~----~~~~~~e~SAk~~~~v~ 143 (200)
T smart00176 69 QCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI-TFHRK----KNLQYYDISAKSNYNFE 143 (200)
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHH-HHHHH----cCCEEEEEeCCCCCCHH
Confidence 9999999999986655443 4444544 478999999999986432211111 22221 24689999999999999
Q ss_pred HHHHHHHHHHhh
Q psy17091 343 SFMESINHVYDS 354 (1250)
Q Consensus 343 ~l~~~i~~~~~~ 354 (1250)
++|+++.+.+..
T Consensus 144 ~~F~~l~~~i~~ 155 (200)
T smart00176 144 KPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHHh
Confidence 999999876543
No 457
>KOG0462|consensus
Probab=99.61 E-value=6.1e-15 Score=167.71 Aligned_cols=162 Identities=23% Similarity=0.271 Sum_probs=134.4
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCccee--------------ccCCCCcceeeEEEEEEEcC---eeEEEEecCCCCCCC
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVI--------------TYDTPGTTRDSIKSLFEYNN---KKYILIDTAGIRRRN 244 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~--------------~~~~~gtT~~~~~~~~~~~~---~~~~liDTpG~~~~~ 244 (1250)
--+++|+-+-..|||||..+|+.....+ +....|+|...+...+.|.+ ..++||||||+.+++
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 4579999999999999999998332211 23467999999999999988 788999999999886
Q ss_pred cchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhcc
Q psy17091 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF 324 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~ 324 (1250)
- ...+.+..+|++++|+||++|+..|....+..+.+.+..+|.|+||+|+.. .+.+....++.+.+..
T Consensus 140 ~-----------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~-adpe~V~~q~~~lF~~ 207 (650)
T KOG0462|consen 140 G-----------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPS-ADPERVENQLFELFDI 207 (650)
T ss_pred c-----------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCC-CCHHHHHHHHHHHhcC
Confidence 1 123445679999999999999999999999999999999999999999965 3456677777777765
Q ss_pred CCCCeEEEeecCCCCChHHHHHHHHHHHhhcc
Q psy17091 325 LSFAMFNFISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 325 ~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
.. .+++.+|||+|.|+++++++|.+.++...
T Consensus 208 ~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 208 PP-AEVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred Cc-cceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 44 58999999999999999999988876554
No 458
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.60 E-value=5.9e-15 Score=177.29 Aligned_cols=141 Identities=23% Similarity=0.304 Sum_probs=109.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccc------------------------------cCCCcceeeeEEEEEECCEEEE
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVA------------------------------NYPGLTRDRHYGEGYIGKKSFI 53 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~------------------------------~~~~~T~~~~~~~~~~~~~~~~ 53 (1250)
+|+++|++|+|||||+|+|+....++.. ..+|+|+|.....+++++..+.
T Consensus 8 ~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~ 87 (425)
T PRK12317 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFT 87 (425)
T ss_pred EEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEE
Confidence 6999999999999999999965443321 1689999999999999999999
Q ss_pred EEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCC--CCChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCccc-
Q psy17091 54 IIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQ--GLVEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS- 129 (1250)
Q Consensus 54 liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~--~~~~~~~~~~~~l~~~~~-p~ilv~NK~D~~~~~~~- 129 (1250)
||||||+. .+...+...+..+|++++|+|+++ +......+...+++..+. |+++|+||+|+.+....
T Consensus 88 liDtpG~~---------~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 88 IVDCPGHR---------DFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred EEECCCcc---------cchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHH
Confidence 99999975 233344455789999999999998 676767777777777775 58999999999752211
Q ss_pred --------hhHH-hcCC----CCcEecccccCCchhH
Q psy17091 130 --------LDFY-ELGI----GNPHIISALYGNGIKN 153 (1250)
Q Consensus 130 --------~~~~-~~~~----~~~~~iSA~~g~gi~~ 153 (1250)
.+++ ..++ .+++++||++|.|+++
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 1222 2343 2579999999999987
No 459
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.60 E-value=9.2e-15 Score=173.73 Aligned_cols=160 Identities=19% Similarity=0.175 Sum_probs=111.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcce--eccCCCCcceeeEEEEEE--------------E------------cCeeE
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRV--ITYDTPGTTRDSIKSLFE--------------Y------------NNKKY 232 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~--~~~~~~gtT~~~~~~~~~--------------~------------~~~~~ 232 (1250)
+.++|+++|++|+|||||+++|.+.... ......|+|.+.-...+. . .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4689999999999999999999864211 111234555544322111 0 14679
Q ss_pred EEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCC-CHHHHHHHHHHHHcC-CcEEEEEeccccCCccc
Q psy17091 233 ILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-SAQDINIANFIYESG-RSLIVCVNKWDSIIHNQ 310 (1250)
Q Consensus 233 ~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~-~~~d~~~~~~~~~~~-~p~iiv~NK~Dl~~~~~ 310 (1250)
.+|||||+ +.|. ......+..+|++++|+|++++. ..+..+.+..+...+ +|+++|+||+|+.+...
T Consensus 83 ~liDtPGh----------~~f~-~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~ 151 (406)
T TIGR03680 83 SFVDAPGH----------ETLM-ATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEK 151 (406)
T ss_pred EEEECCCH----------HHHH-HHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHH
Confidence 99999999 3342 23445667899999999999887 677777777776665 46999999999986544
Q ss_pred hHHHHHHHHHHhcc--CCCCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 311 RKIIKNNIKKKLNF--LSFAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 311 ~~~~~~~l~~~l~~--~~~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
..+..+++.+.+.. ....+++++||++|.|+++|++++...
T Consensus 152 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 33334444444432 224689999999999999999888654
No 460
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.60 E-value=8.3e-15 Score=159.31 Aligned_cols=164 Identities=21% Similarity=0.326 Sum_probs=123.0
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc-CeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
-|++||.||+|||||+++++..+. .+.+||+||..+....+... +..+++-|.||+....+....+ -.+.++++
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GL----G~~FLrHI 235 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGL----GLRFLRHI 235 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCc----cHHHHHHH
Confidence 589999999999999999998764 45599999999999988874 5579999999997765332222 35678999
Q ss_pred ccCcEEEEEecCCCCCC---HHHHH-HHHHHHH-----cCCcEEEEEeccccC-CccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 263 LEANVVILLLDAQQNIS---AQDIN-IANFIYE-----SGRSLIVCVNKWDSI-IHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~---~~d~~-~~~~~~~-----~~~p~iiv~NK~Dl~-~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
.++.+.++|+|.+..-. .++.. +...+.. .++|.+||+||+|+. +.+..+...+.+.+... +.+..+
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~---~~~~~~ 312 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG---WEVFYL 312 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC---CCccee
Confidence 99999999999985421 34443 4444443 479999999999965 44445555555555444 333333
Q ss_pred eecCCCCChHHHHHHHHHHHhhc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
+||.+++|+++|...+.+.+...
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 313 ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHh
Confidence 99999999999999998887654
No 461
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.60 E-value=9.2e-15 Score=155.94 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=102.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||++++++.... ....|++..+. ...+..++ ..+.||||||... +......++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~---------~~~l~~~~~ 69 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEE---------FDRLRSLSY 69 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeee-EEEEEECCEEEEEEEEECCCChh---------ccccccccc
Confidence 37999999999999999999987643 12223332222 23344444 4789999999752 223334467
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCccc-----------------hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINSSIS-----------------LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~D~~~~~~~-----------------~~~~-~~~~~ 138 (1250)
..+|++++|+|.++..+.... .|...+.. .+.|+++|+||+|+.+.... .++. ..+..
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINAL 149 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 899999999999875333221 24444443 36899999999998654321 1111 22323
Q ss_pred CcEecccccCCchhHHHHHHHHhhCC
Q psy17091 139 NPHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
.++++||++|.|++++++++.+.+..
T Consensus 150 ~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 150 RYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 57999999999999999999987653
No 462
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=1.5e-14 Score=154.28 Aligned_cols=155 Identities=16% Similarity=0.103 Sum_probs=99.7
Q ss_pred eeEEEEEeCCCChhhHHHH-HHhCCcc---eeccCCCCcce--eeEEEE--------EEEcC--eeEEEEecCCCCCCCc
Q psy17091 182 YIKVAIVGKPNVGKSTLIN-SLLGENR---VITYDTPGTTR--DSIKSL--------FEYNN--KKYILIDTAGIRRRNK 245 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin-~l~~~~~---~~~~~~~gtT~--~~~~~~--------~~~~~--~~~~liDTpG~~~~~~ 245 (1250)
.+||+++|.+|||||||++ ++.+... .....+.+|.- +..... ..+++ ..+.+|||||+.+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 5544321 11222333331 222111 13444 46778999999421
Q ss_pred chhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHH--HHHHHHH--cCCcEEEEEeccccCCcc------------
Q psy17091 246 TFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDIN--IANFIYE--SGRSLIVCVNKWDSIIHN------------ 309 (1250)
Q Consensus 246 ~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~--~~~~~~~--~~~p~iiv~NK~Dl~~~~------------ 309 (1250)
.+ ..+++.||++++|+|.++..+.+... +...+.. .+.|+++|+||+||.+..
T Consensus 80 ----------~~-~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 148 (195)
T cd01873 80 ----------DR-RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred ----------hh-cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccc
Confidence 11 13678999999999999887766553 4455544 368999999999986410
Q ss_pred -----chHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHH
Q psy17091 310 -----QRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINH 350 (1250)
Q Consensus 310 -----~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~ 350 (1250)
......++.++.....+ ++++++||++|.||+++|+.+.+
T Consensus 149 ~~~~~~~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 149 RPIKNADILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccCCccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHH
Confidence 01111222333333223 58999999999999999998865
No 463
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.60 E-value=1.2e-14 Score=179.24 Aligned_cols=159 Identities=21% Similarity=0.243 Sum_probs=119.6
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceec--------------cCCCCcceeeEEEEEEEc-----CeeEEEEecCCCCC
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVIT--------------YDTPGTTRDSIKSLFEYN-----NKKYILIDTAGIRR 242 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~--------------~~~~gtT~~~~~~~~~~~-----~~~~~liDTpG~~~ 242 (1250)
-.+++|+|+.++|||||+++|+.....+. ....|+|.......+.|. +..++||||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 35899999999999999999985321110 124588887766667664 46789999999954
Q ss_pred CCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHh
Q psy17091 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL 322 (1250)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l 322 (1250)
+. .....+++.+|++++|+|++++.+.++...+..+.+.++|+++|+||+|+.+.. .....+++.+.+
T Consensus 87 F~-----------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~-~~~v~~ei~~~l 154 (600)
T PRK05433 87 FS-----------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD-PERVKQEIEDVI 154 (600)
T ss_pred HH-----------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc-HHHHHHHHHHHh
Confidence 32 123356788999999999999999998888888888899999999999986432 333445555554
Q ss_pred ccCCCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 323 NFLSFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 323 ~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
.. ....++++||++|.|+++|++++.+.++
T Consensus 155 g~-~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 155 GI-DASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CC-CcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 32 2235899999999999999999876654
No 464
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.60 E-value=1.6e-14 Score=148.54 Aligned_cols=153 Identities=29% Similarity=0.406 Sum_probs=116.6
Q ss_pred EEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC-CEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCE
Q psy17091 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDI 85 (1250)
Q Consensus 7 lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~ 85 (1250)
++|++|+|||||+|+|++.........+++|.+......... +..+.+|||||+...... .......+...+..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~--~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGL--GREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccc--hhhHHHHHHHHHHhCCE
Confidence 589999999999999998876657778888888877776665 679999999998754311 11123455667789999
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccchhH------H--hcCCCCcEecccccCCchhHHHHH
Q psy17091 86 IIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDF------Y--ELGIGNPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 86 il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~~~~------~--~~~~~~~~~iSA~~g~gi~~L~~~ 157 (1250)
+++|+|+..........+.......+.|+++|+||+|+.......+. . .....+++++||+++.|+.++++.
T Consensus 79 il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~ 158 (163)
T cd00880 79 ILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREA 158 (163)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHH
Confidence 99999999876666555455666678999999999999876544221 1 122346799999999999999999
Q ss_pred HHHh
Q psy17091 158 ILTI 161 (1250)
Q Consensus 158 i~~~ 161 (1250)
+.+.
T Consensus 159 l~~~ 162 (163)
T cd00880 159 LIEA 162 (163)
T ss_pred HHhh
Confidence 8754
No 465
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.60 E-value=2.3e-14 Score=159.98 Aligned_cols=114 Identities=26% Similarity=0.345 Sum_probs=89.0
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceec---------------cC------CCCcceeeEEEEEEEcCeeEEEEecCCCC
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVIT---------------YD------TPGTTRDSIKSLFEYNNKKYILIDTAGIR 241 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~---------------~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~ 241 (1250)
-+|+|+|++|+|||||+++|+.....+. .+ ..|.|.......+.+++.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4699999999999999999985322211 11 12444445566788999999999999994
Q ss_pred CCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCC
Q psy17091 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII 307 (1250)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~ 307 (1250)
++ . ..+..+++.+|++++|+|++.++..+...+++.....++|+++++||+|+..
T Consensus 83 df----------~-~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DF----------S-EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred HH----------H-HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence 32 2 2244567889999999999999888888888888888999999999999754
No 466
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.60 E-value=1.6e-14 Score=154.34 Aligned_cols=146 Identities=18% Similarity=0.131 Sum_probs=103.3
Q ss_pred EeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCE
Q psy17091 8 VGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDI 85 (1250)
Q Consensus 8 vG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~ 85 (1250)
||.+|||||||+++++..... ....|++..+.....+.+++ ..+.||||||.+ ++......+++++|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e---------~~~~l~~~~~~~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE---------KFGGLRDGYYIQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCch---------hhhhhhHHHhcCCCE
Confidence 699999999999999976532 12233333455444555544 588999999975 455566678899999
Q ss_pred EEEEEeCCCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCCccc---hhHH-hcCCCCcEecccccCCchhHHHHHH
Q psy17091 86 IIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALYGNGIKNFLENI 158 (1250)
Q Consensus 86 il~v~D~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~D~~~~~~~---~~~~-~~~~~~~~~iSA~~g~gi~~L~~~i 158 (1250)
+|+|+|.+++.+... ..|...+++ .+.|+++|+||+|+...... .++. ..++ .++++||++|.|++++|+++
T Consensus 71 ~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~-~~~e~SAk~~~~v~~~F~~l 149 (200)
T smart00176 71 AIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNL-QYYDISAKSNYNFEKPFLWL 149 (200)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHH
Confidence 999999987543322 234444444 46899999999998643222 2222 2233 68999999999999999999
Q ss_pred HHhhCC
Q psy17091 159 LTIELP 164 (1250)
Q Consensus 159 ~~~l~~ 164 (1250)
.+.+..
T Consensus 150 ~~~i~~ 155 (200)
T smart00176 150 ARKLIG 155 (200)
T ss_pred HHHHHh
Confidence 987654
No 467
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.60 E-value=2e-14 Score=156.84 Aligned_cols=149 Identities=20% Similarity=0.179 Sum_probs=101.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCC-cceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPG-LTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~-~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
.||+++|.+|||||||++++++.... ...++. ...+.....+.+++ ..+.+|||||.+. ... ..+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--------~~~---~~~ 68 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--------WTE---DSC 68 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--------HHH---hHH
Confidence 47999999999999999999866532 122222 22244444555544 5789999999761 111 123
Q ss_pred hh-cCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc--h---hHH-hcCCCCcEeccccc
Q psy17091 80 II-ESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS--L---DFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 80 ~~-~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~--~---~~~-~~~~~~~~~iSA~~ 147 (1250)
+. ++|++++|+|.++..+... ..+...+.. .+.|+++|+||+|+...... . .+. ..+. .++++||++
T Consensus 69 ~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~SA~~ 147 (221)
T cd04148 69 MQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIETSAGL 147 (221)
T ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCC-eEEEecCCC
Confidence 44 8999999999987433221 234444443 36899999999998765443 1 122 2233 679999999
Q ss_pred CCchhHHHHHHHHhhCC
Q psy17091 148 GNGIKNFLENILTIELP 164 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~ 164 (1250)
+.|++++++.+...+..
T Consensus 148 ~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 148 QHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 468
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.60 E-value=2e-14 Score=151.01 Aligned_cols=145 Identities=17% Similarity=0.283 Sum_probs=100.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|++|||||||+++|.+.......+..+ .....+.+.+..+.+|||||.. .+...+..+++.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g----~~~~~i~~~~~~~~~~D~~G~~---------~~~~~~~~~~~~ 81 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQG----FNIKTVQSDGFKLNVWDIGGQR---------AIRPYWRNYFEN 81 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCC----cceEEEEECCEEEEEEECCCCH---------HHHHHHHHHhcC
Confidence 589999999999999999999875432222222 3334556778999999999964 344455666789
Q ss_pred CCEEEEEEeCCCCCChh--hHHHHHHHH---hcCCCEEEEEeCCCCCCCccchhHH-hcCCC-------CcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLVEQ--DKLITNFLR---KSGQPIVLVINKSENINSSISLDFY-ELGIG-------NPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~--~~~~~~~l~---~~~~p~ilv~NK~D~~~~~~~~~~~-~~~~~-------~~~~iSA~~g~ 149 (1250)
+|++++|+|+++..... ...+...++ ..++|+++++||+|+.+.....++. .++.. .++++||++|.
T Consensus 82 ~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 82 TDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCC
Confidence 99999999998632111 122222222 2468999999999987644332221 12221 35789999999
Q ss_pred chhHHHHHHHH
Q psy17091 150 GIKNFLENILT 160 (1250)
Q Consensus 150 gi~~L~~~i~~ 160 (1250)
|++++++++.+
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 469
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.59 E-value=1.5e-14 Score=155.94 Aligned_cols=153 Identities=19% Similarity=0.119 Sum_probs=105.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCC--cccccCCCcceeeeEEEEEEC---------------------------C-----
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRD--ALVANYPGLTRDRHYGEGYIG---------------------------K----- 49 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~--~~v~~~~~~T~~~~~~~~~~~---------------------------~----- 49 (1250)
.|+++|+.++|||||+.+|++... .......+.|.......+.|. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 689999999999999999987521 111112233333333222222 3
Q ss_pred -EEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCC-CChhhHHHHHHHHhcCC-CEEEEEeCCCCCCC
Q psy17091 50 -KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG-LVEQDKLITNFLRKSGQ-PIVLVINKSENINS 126 (1250)
Q Consensus 50 -~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~-~~~~~~~~~~~l~~~~~-p~ilv~NK~D~~~~ 126 (1250)
..+.||||||+. .+...+..++..+|++++|+|++++ ...........+...+. |+++|+||+|+.+.
T Consensus 82 ~~~i~~iDtPG~~---------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 82 VRHVSFVDCPGHE---------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE 152 (203)
T ss_pred ccEEEEEECCChH---------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH
Confidence 689999999953 5667778888999999999999874 33344444455555554 69999999999754
Q ss_pred ccc-------hhHHhc---CCCCcEecccccCCchhHHHHHHHHhhCCc
Q psy17091 127 SIS-------LDFYEL---GIGNPHIISALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 127 ~~~-------~~~~~~---~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
... .+++.. ...+++++||++|.|+++|++.+.+.++++
T Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 153 EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 322 111211 123679999999999999999999887754
No 470
>PRK12739 elongation factor G; Reviewed
Probab=99.59 E-value=1.4e-14 Score=183.35 Aligned_cols=146 Identities=21% Similarity=0.178 Sum_probs=115.0
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcce-----ecc------------CCCCcceeeEEEEEEEcCeeEEEEecCCCCCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRV-----ITY------------DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~-----~~~------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 243 (1250)
+-.+|+|+|++|+|||||+|+|+..... .++ ..+|+|.+.....+.|++.++++|||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 3578999999999999999999742111 112 2679999999999999999999999999832
Q ss_pred CcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhc
Q psy17091 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323 (1250)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~ 323 (1250)
|. ..+..+++.+|++++|+|+++++..++..++..+.+.++|+|+++||||+...+ .....+++++.+.
T Consensus 86 ---------f~-~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l~ 154 (691)
T PRK12739 86 ---------FT-IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD-FFRSVEQIKDRLG 154 (691)
T ss_pred ---------HH-HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 32 245677889999999999999999999999999999999999999999998543 4556667777666
Q ss_pred cCCCCeEEEeecCCC
Q psy17091 324 FLSFAMFNFISAIKL 338 (1250)
Q Consensus 324 ~~~~~~iv~iSA~~g 338 (1250)
.......+++||..+
T Consensus 155 ~~~~~~~iPis~~~~ 169 (691)
T PRK12739 155 ANAVPIQLPIGAEDD 169 (691)
T ss_pred CCceeEEeccccccc
Confidence 543334556666544
No 471
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.59 E-value=1.5e-14 Score=152.20 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=100.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
++||+++|.+|||||||++++.+.... ..+.+++.+.....+.+++. .+.+|||||... +......+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~ 69 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQED---------YDRLRPLS 69 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchh---------hhhccccc
Confidence 368999999999999999999987632 23333333433445566554 678999999752 22222345
Q ss_pred hhcCCEEEEEEeCCCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCCccc-----------------hhHH-hcCC
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSIS-----------------LDFY-ELGI 137 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~D~~~~~~~-----------------~~~~-~~~~ 137 (1250)
+.++|++++|+|..+..+... ..+...++. .+.|+++|+||+|+...... .++. ..+.
T Consensus 70 ~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~ 149 (175)
T cd01870 70 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA 149 (175)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC
Confidence 789999999999886422212 123333333 47899999999998653221 1111 2233
Q ss_pred CCcEecccccCCchhHHHHHHHHh
Q psy17091 138 GNPHIISALYGNGIKNFLENILTI 161 (1250)
Q Consensus 138 ~~~~~iSA~~g~gi~~L~~~i~~~ 161 (1250)
.+++++||++|.|++++++.+.+.
T Consensus 150 ~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 150 FGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred cEEEEeccccCcCHHHHHHHHHHH
Confidence 467999999999999999998754
No 472
>PRK13796 GTPase YqeH; Provisional
Probab=99.59 E-value=1e-14 Score=170.10 Aligned_cols=145 Identities=34% Similarity=0.428 Sum_probs=104.7
Q ss_pred HHHHhhcCC-EEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhH----H-hcCC--CCcEec
Q psy17091 76 TKQAIIESD-IIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDF----Y-ELGI--GNPHII 143 (1250)
Q Consensus 76 ~~~~~~~ad-~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~----~-~~~~--~~~~~i 143 (1250)
+...+.++| +|++|+|+.+........+.++. .++|+++|+||+|+...... .++ . ..|. ..++.+
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~v 139 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLI 139 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence 455566666 99999999874444334444433 26899999999999753321 111 1 2344 267999
Q ss_pred ccccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCC-----cceeccCCCCcce
Q psy17091 144 SALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGE-----NRVITYDTPGTTR 218 (1250)
Q Consensus 144 SA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~-----~~~~~~~~~gtT~ 218 (1250)
||+++.|++++++.+.+... ..+++++|.||||||||+|+|++. +...+++.||||+
T Consensus 140 SAk~g~gI~eL~~~I~~~~~------------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~ 201 (365)
T PRK13796 140 SAQKGHGIDELLEAIEKYRE------------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTL 201 (365)
T ss_pred ECCCCCCHHHHHHHHHHhcC------------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccc
Confidence 99999999999999875321 236999999999999999999853 2345789999999
Q ss_pred eeEEEEEEEcCeeEEEEecCCCCCC
Q psy17091 219 DSIKSLFEYNNKKYILIDTAGIRRR 243 (1250)
Q Consensus 219 ~~~~~~~~~~~~~~~liDTpG~~~~ 243 (1250)
+.+...+ + ....++||||+...
T Consensus 202 ~~~~~~l--~-~~~~l~DTPGi~~~ 223 (365)
T PRK13796 202 DKIEIPL--D-DGSFLYDTPGIIHR 223 (365)
T ss_pred eeEEEEc--C-CCcEEEECCCcccc
Confidence 9865544 2 33589999999654
No 473
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.59 E-value=3.5e-15 Score=160.69 Aligned_cols=157 Identities=27% Similarity=0.287 Sum_probs=117.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
...+++++|.|+||||||+|.|++.+ ..+.++|+||..++.+.++|+|.+++++|+||+......... +..+.+.
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~g----rG~~vls 136 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRG----RGRQVLS 136 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCCC----Ccceeee
Confidence 46899999999999999999999976 556699999999999999999999999999999765432211 1234567
Q ss_pred hhccCcEEEEEecCCCCC------------------------------------------CHHHHHHHHHHHH-------
Q psy17091 261 SILEANVVILLLDAQQNI------------------------------------------SAQDINIANFIYE------- 291 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~------------------------------------------~~~d~~~~~~~~~------- 291 (1250)
.+|.||.+++|+|+.... +.-|....+.+++
T Consensus 137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA 216 (365)
T COG1163 137 VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA 216 (365)
T ss_pred eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc
Confidence 889999999999974321 1122222222221
Q ss_pred ---------------------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHH
Q psy17091 292 ---------------------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINH 350 (1250)
Q Consensus 292 ---------------------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~ 350 (1250)
..+|++.|+||+|+...+.. ..+.+. ...+++||+++.|+++|.+.+..
T Consensus 217 ~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~----~~l~~~------~~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 217 DVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEEL----ERLARK------PNSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred eEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHH----HHHHhc------cceEEEecccCCCHHHHHHHHHH
Confidence 14799999999999874332 222222 27899999999999999998866
Q ss_pred HH
Q psy17091 351 VY 352 (1250)
Q Consensus 351 ~~ 352 (1250)
.+
T Consensus 287 ~L 288 (365)
T COG1163 287 VL 288 (365)
T ss_pred hh
Confidence 54
No 474
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.59 E-value=2.8e-14 Score=147.01 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=100.1
Q ss_pred EEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCC
Q psy17091 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESD 84 (1250)
Q Consensus 5 I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad 84 (1250)
|+++|++|||||||+|+|++.... ....|+++.+. ..+..++..+.+|||||.. .+......++..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIPTVGFNM--RKVTKGNVTLKVWDLGGQP---------RFRSMWERYCRGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccCCCCcce--EEEEECCEEEEEEECCCCH---------hHHHHHHHHHhcCC
Confidence 899999999999999999987643 33444444333 3455667899999999964 44455667788999
Q ss_pred EEEEEEeCCCCCChh--hHHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHhcC-----CCCcEecccccCCch
Q psy17091 85 IIIFIVDGRQGLVEQ--DKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYELG-----IGNPHIISALYGNGI 151 (1250)
Q Consensus 85 ~il~v~D~~~~~~~~--~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~~~-----~~~~~~iSA~~g~gi 151 (1250)
++++|+|+++..... ...+..++.. .++|+++|+||+|+.+.... .+..... ..+.+++||++|.|+
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 999999997632111 1222233221 46899999999998765432 1121111 124689999999999
Q ss_pred hHHHHHHHH
Q psy17091 152 KNFLENILT 160 (1250)
Q Consensus 152 ~~L~~~i~~ 160 (1250)
+++++++.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999998864
No 475
>KOG0080|consensus
Probab=99.59 E-value=6.2e-15 Score=141.31 Aligned_cols=155 Identities=20% Similarity=0.184 Sum_probs=108.9
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCC--cceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG--TTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~g--tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
.+||.++|.+|||||||+-++....+. +... +..|.....+..+|. ++.+|||+|+ |+|....
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd---~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq----------ErFRtLT 77 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFD---DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ----------ERFRTLT 77 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccC---ccCCceeeeeEEEEEEEEcCceEEEEEEeccch----------HhhhccC
Confidence 599999999999999999999865432 2222 345666677777765 5677999999 5565443
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHH-----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDINIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
. .+++.|.++|+|+|.+..-+...+.+|-.-.+ .++-.++|+||+|..++. ....++-.++.. ...+-+++
T Consensus 78 p-SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R--~V~reEG~kfAr-~h~~LFiE 153 (209)
T KOG0080|consen 78 P-SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER--VVDREEGLKFAR-KHRCLFIE 153 (209)
T ss_pred H-hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcc--cccHHHHHHHHH-hhCcEEEE
Confidence 3 78899999999999998866555544333222 245678999999975322 222222222222 12367999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q psy17091 333 ISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+|||+.+||+..|+.+.+.+-
T Consensus 154 ~SAkt~~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 154 CSAKTRENVQCCFEELVEKII 174 (209)
T ss_pred cchhhhccHHHHHHHHHHHHh
Confidence 999999999999998866543
No 476
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.59 E-value=8.8e-15 Score=167.31 Aligned_cols=166 Identities=28% Similarity=0.387 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHH-hcCCCCcEeccc
Q psy17091 70 HEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISA 145 (1250)
Q Consensus 70 ~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~-~~~~~~~~~iSA 145 (1250)
.++.++....+..+|+|+.|+|++++.......+.+++.. +|.++|+||+|+...... .+++ .......+.+|+
T Consensus 22 ~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~--k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~ 99 (322)
T COG1161 22 KKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE--KPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSA 99 (322)
T ss_pred HHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc--CCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEe
Confidence 4677788888999999999999999888888888888764 555999999999876554 2233 221225688999
Q ss_pred ccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEE
Q psy17091 146 LYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLF 225 (1250)
Q Consensus 146 ~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~ 225 (1250)
.++.+...+..++........+... ........++++++|.||||||||||+|++...+.+++.||+|++.+....
T Consensus 100 ~~~~~~~~i~~~~~~~~~~~i~~~~----~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~ 175 (322)
T COG1161 100 KSRQGGKKIRKALEKLSEEKIKRLK----KKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL 175 (322)
T ss_pred ecccCccchHHHHHHHHHHHHHHHh----hcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc
Confidence 9999988888554432211100000 000012358899999999999999999999999999999999998876655
Q ss_pred EEcCeeEEEEecCCCCCCC
Q psy17091 226 EYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 226 ~~~~~~~~liDTpG~~~~~ 244 (1250)
+..+.|+||||+....
T Consensus 176 ---~~~i~LlDtPGii~~~ 191 (322)
T COG1161 176 ---DDGIYLLDTPGIIPPK 191 (322)
T ss_pred ---CCCeEEecCCCcCCCC
Confidence 3458999999997765
No 477
>KOG0093|consensus
Probab=99.59 E-value=1.8e-14 Score=136.02 Aligned_cols=157 Identities=19% Similarity=0.133 Sum_probs=111.3
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+|+.|+|...|||||++-+.++...... -+.....|....++.... .++++|||+|+ |.++...+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~a-fvsTvGidFKvKTvyr~~kRiklQiwDTagq----------EryrtiTT- 88 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ----------ERYRTITT- 88 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccc-eeeeeeeeEEEeEeeecccEEEEEEEecccc----------hhhhHHHH-
Confidence 47999999999999999999998654332 222333444433333333 46788999999 56666555
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHHHHHHHH----HcCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDINIANFIY----ESGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.++++|+++|+++|+++..+.....-+.... ..+.|+|+|+||||+.++... .+....+.+.++ ..+|++|
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG----fefFEtS 164 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLG----FEFFETS 164 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhC----hHHhhhc
Confidence 5789999999999999864433333222222 358999999999999765433 233444555555 3789999
Q ss_pred cCCCCChHHHHHHHHHHHhh
Q psy17091 335 AIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (1250)
||.+.||.++|..+...+..
T Consensus 165 aK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 165 AKENINVKQVFERLVDIICD 184 (193)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999999999998777654
No 478
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.59 E-value=1.4e-14 Score=152.26 Aligned_cols=147 Identities=20% Similarity=0.168 Sum_probs=102.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|.+|||||||+++++++.. ...+.+++.+.....+.+++. .+.+|||||.... ......++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~ 70 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY---------DRLRPLSYP 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc---------cccccccCC
Confidence 799999999999999999998763 333344444444445566664 4679999997532 222334578
Q ss_pred cCCEEEEEEeCCCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCCcc------------c-----hhH-HhcCCCC
Q psy17091 82 ESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDF-YELGIGN 139 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~D~~~~~~------------~-----~~~-~~~~~~~ 139 (1250)
.+|++++|+|..++.+..+ ..+...++. .+.|+++|+||+|+.+... . ..+ ...+...
T Consensus 71 ~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 9999999999987533222 234444543 4789999999999864321 1 111 1345446
Q ss_pred cEecccccCCchhHHHHHHHHh
Q psy17091 140 PHIISALYGNGIKNFLENILTI 161 (1250)
Q Consensus 140 ~~~iSA~~g~gi~~L~~~i~~~ 161 (1250)
++++||++|.|++++++.+...
T Consensus 151 ~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred EEEecCCcCCCHHHHHHHHHHH
Confidence 7899999999999999998764
No 479
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.59 E-value=1.2e-14 Score=151.25 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=98.1
Q ss_pred EEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCC
Q psy17091 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESD 84 (1250)
Q Consensus 5 I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad 84 (1250)
|+++|.+|||||||++++++.... ....|.+..+ ...+.+.+..+.+|||||.. ++...+..+++.+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-ESVVPTTGFN--SVAIPTQDAIMELLEIGGSQ---------NLRKYWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-ccccccCCcc--eEEEeeCCeEEEEEECCCCc---------chhHHHHHHHhhCC
Confidence 899999999999999999987532 2233333332 33456678899999999975 34455567789999
Q ss_pred EEEEEEeCCCCCChh--hHHHHHHHHh-cCCCEEEEEeCCCCCCCccchhH--------H--hcCCCCcEeccccc----
Q psy17091 85 IIIFIVDGRQGLVEQ--DKLITNFLRK-SGQPIVLVINKSENINSSISLDF--------Y--ELGIGNPHIISALY---- 147 (1250)
Q Consensus 85 ~il~v~D~~~~~~~~--~~~~~~~l~~-~~~p~ilv~NK~D~~~~~~~~~~--------~--~~~~~~~~~iSA~~---- 147 (1250)
++++|+|+++..... ...+.+++.. .++|+++|+||+|+.......++ + +.+. .++++||++
T Consensus 70 ~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~s~ 148 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW-ILQGTSLDDDGSP 148 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce-EEEEeeecCCCCh
Confidence 999999998743211 1223333332 47899999999998665432111 1 1122 457778777
Q ss_pred --CCchhHHHHHHHH
Q psy17091 148 --GNGIKNFLENILT 160 (1250)
Q Consensus 148 --g~gi~~L~~~i~~ 160 (1250)
++|++++++.++.
T Consensus 149 ~~~~~v~~~~~~~~~ 163 (164)
T cd04162 149 SRMEAVKDLLSQLIN 163 (164)
T ss_pred hHHHHHHHHHHHHhc
Confidence 9999999998763
No 480
>KOG0079|consensus
Probab=99.59 E-value=9.4e-15 Score=137.99 Aligned_cols=149 Identities=23% Similarity=0.271 Sum_probs=116.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+.+|+|.||||||||+-++.....+ -+..-.+..|.....+.++|. .++||||+|++ +|+..+..++
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs-~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqE---------rFrtitstyy 78 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFS-GSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQE---------RFRTITSTYY 78 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccc-cceEEEeeeeEEEEEeecCCcEEEEEEeecccHH---------HHHHHHHHHc
Confidence 46789999999999999999876432 334445567888888888874 78899999965 7888899999
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHh-----cCCCEEEEEeCCCCCCCccc--hh--HH--hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRK-----SGQPIVLVINKSENINSSIS--LD--FY--ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~--~~--~~--~~~~~~~~~iSA~~g~ 149 (1250)
+..+++++|+|.+.+ ++.....+||.+ ...|-++|+||+|+++...+ .+ .+ ..|+ +.|++||+...
T Consensus 79 rgthgv~vVYDVTn~--ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-e~FETSaKe~~ 155 (198)
T KOG0079|consen 79 RGTHGVIVVYDVTNG--ESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-ELFETSAKENE 155 (198)
T ss_pred cCCceEEEEEECcch--hhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCc-hheehhhhhcc
Confidence 999999999999874 334445556654 24688999999999877655 22 22 3344 77999999999
Q ss_pred chhHHHHHHHHhhCC
Q psy17091 150 GIKNFLENILTIELP 164 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~ 164 (1250)
|++..+..|.+.+..
T Consensus 156 NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 156 NVEAMFHCITKQVLQ 170 (198)
T ss_pred cchHHHHHHHHHHHH
Confidence 999999999876543
No 481
>PRK09866 hypothetical protein; Provisional
Probab=99.59 E-value=1.3e-13 Score=162.55 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=87.6
Q ss_pred CeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCC--cEEEEEeccccC
Q psy17091 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR--SLIVCVNKWDSI 306 (1250)
Q Consensus 229 ~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~--p~iiv~NK~Dl~ 306 (1250)
..+++++||||+..... ..+.+++ ...+..||++++|+|++.+.++.|..+++.+.+.++ |+++|+||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~--~~L~k~M----~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQ--PHLQKML----NQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccc--hHHHHHH----HHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 36889999999965421 1233333 236899999999999999889999999999988875 999999999997
Q ss_pred Cccc--hHHHHHHHHHHhc--cCCCCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 307 IHNQ--RKIIKNNIKKKLN--FLSFAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 307 ~~~~--~~~~~~~l~~~l~--~~~~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
++.. .+...+.+...+. ...+..++++||++|.|+++|++.|...
T Consensus 303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 5322 3344444443322 3346789999999999999999988653
No 482
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.59 E-value=1.9e-14 Score=149.80 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=100.2
Q ss_pred EEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhcc
Q psy17091 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILE 264 (1250)
Q Consensus 185 i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ 264 (1250)
|+++|.+|||||||++++.+.... ....|.+..+ ...+...+..+.+|||||..+.. .. ...+++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~----------~~-~~~~~~~ 67 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-ESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLR----------KY-WKRYLSG 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-ccccccCCcc--eEEEeeCCeEEEEEECCCCcchh----------HH-HHHHHhh
Confidence 799999999999999999976432 2122222222 23455667889999999985432 11 2256789
Q ss_pred CcEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEeccccCCccchHHHHHHH--HHHhccCCCCeEEEeecCC--
Q psy17091 265 ANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNI--KKKLNFLSFAMFNFISAIK-- 337 (1250)
Q Consensus 265 ad~vllviD~~~~~~~~d~-~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~l--~~~l~~~~~~~iv~iSA~~-- 337 (1250)
+|++++|+|+++..+.... ..+..+.. .++|+++|+||+|+.......++.+.+ .+... -...+++++||++
T Consensus 68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 146 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIAR-GRRWILQGTSLDDDG 146 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcC-CCceEEEEeeecCCC
Confidence 9999999999886432222 23333332 579999999999997654443333222 22212 2246789999998
Q ss_pred ----CCChHHHHHHHH
Q psy17091 338 ----LNNINSFMESIN 349 (1250)
Q Consensus 338 ----g~gv~~l~~~i~ 349 (1250)
++||+++|+.+.
T Consensus 147 s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 147 SPSRMEAVKDLLSQLI 162 (164)
T ss_pred ChhHHHHHHHHHHHHh
Confidence 999999998774
No 483
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.59 E-value=3.1e-14 Score=148.68 Aligned_cols=144 Identities=26% Similarity=0.311 Sum_probs=98.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|+++|.+|||||||+|+|++.... ...| |.......+..++..+.+|||||.. ++...+..+++.+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~--~~~~--t~g~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPK--KVAP--TVGFTPTKLRLDKYEVCIFDLGGGA---------NFRGIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCc--cccC--cccceEEEEEECCEEEEEEECCCcH---------HHHHHHHHHHcCC
Confidence 4899999999999999999976322 2222 2222334566788899999999964 4455667788999
Q ss_pred CEEEEEEeCCCCCChhh-HH-HHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHH---hc----CCC-CcEeccccc
Q psy17091 84 DIIIFIVDGRQGLVEQD-KL-ITNFLRK---SGQPIVLVINKSENINSSIS---LDFY---EL----GIG-NPHIISALY 147 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~-~~-~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~---~~----~~~-~~~~iSA~~ 147 (1250)
|++++|+|+++...... .. +...++. .++|+++|+||+|+.+.... .+.. .+ +.. .++++||++
T Consensus 68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEcee
Confidence 99999999987432211 12 2222222 36899999999998765432 1111 11 111 356799999
Q ss_pred C------CchhHHHHHHHH
Q psy17091 148 G------NGIKNFLENILT 160 (1250)
Q Consensus 148 g------~gi~~L~~~i~~ 160 (1250)
| .|+.+.+++|..
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999863
No 484
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.59 E-value=1.3e-14 Score=173.37 Aligned_cols=153 Identities=24% Similarity=0.317 Sum_probs=120.0
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcce------------------------------eccCCCCcceeeEEEEEEEcC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV------------------------------ITYDTPGTTRDSIKSLFEYNN 229 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~------------------------------~~~~~~gtT~~~~~~~~~~~~ 229 (1250)
.+.++|+++|+.++|||||+.+|+..... ......|+|.+.....+++++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 34689999999999999999999741100 011245899999888899999
Q ss_pred eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCC-------CHHHHHHHHHHHHcCCc-EEEEEe
Q psy17091 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-------SAQDINIANFIYESGRS-LIVCVN 301 (1250)
Q Consensus 230 ~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~-------~~~d~~~~~~~~~~~~p-~iiv~N 301 (1250)
..++|+||||+. .| .......+..+|++++|+|++.|. ..|..+.+..+...|+| +|+++|
T Consensus 85 ~~i~lIDtPGh~----------~f-~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vN 153 (446)
T PTZ00141 85 YYFTIIDAPGHR----------DF-IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCIN 153 (446)
T ss_pred eEEEEEECCChH----------HH-HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEE
Confidence 999999999983 33 234456678999999999999986 36888899999999987 578999
Q ss_pred ccccC----CccchHHHHHHHHHHhccCCC----CeEEEeecCCCCChHH
Q psy17091 302 KWDSI----IHNQRKIIKNNIKKKLNFLSF----AMFNFISAIKLNNINS 343 (1250)
Q Consensus 302 K~Dl~----~~~~~~~~~~~l~~~l~~~~~----~~iv~iSA~~g~gv~~ 343 (1250)
|+|.. ++..+++..+++...+...++ .|++++||.+|.|+.+
T Consensus 154 KmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 154 KMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99943 234566777777777765443 7899999999999875
No 485
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.59 E-value=1.6e-14 Score=153.81 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=103.3
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
.||+++|.+|||||||++++...... .....++.+.....+..++. .+.+|||||+.... .... .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------~~~~-~ 68 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYE----------RLRP-L 68 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhcc----------ccch-h
Confidence 58999999999999999999854332 12223444444445555554 46789999984432 1111 2
Q ss_pred hhccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCccc--------hHHHHHHHHHHhccCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQ--------RKIIKNNIKKKLNFLSFA 328 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~~--------~~~~~~~l~~~l~~~~~~ 328 (1250)
.++.+|++++++|.+...+.++. .++..+.. ...|+++|+||+|+.+... .....+.........+..
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 45789999999999876554443 24454443 3699999999999854210 000011122222233345
Q ss_pred eEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 329 MFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 329 ~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+++++||++|.|++++|+++.+...
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999976553
No 486
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.59 E-value=1.9e-14 Score=170.70 Aligned_cols=162 Identities=20% Similarity=0.176 Sum_probs=114.7
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCc--ceeccCCCCcceeeEEEEEEE--------------c------------Cee
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGEN--RVITYDTPGTTRDSIKSLFEY--------------N------------NKK 231 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~--~~~~~~~~gtT~~~~~~~~~~--------------~------------~~~ 231 (1250)
++.++|+++|+.++|||||+.+|.+.. ...-....|+|.+.......+ . ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 346999999999999999999997631 111122457777653322111 0 257
Q ss_pred EEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCC-CHHHHHHHHHHHHcCC-cEEEEEeccccCCcc
Q psy17091 232 YILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-SAQDINIANFIYESGR-SLIVCVNKWDSIIHN 309 (1250)
Q Consensus 232 ~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~-~~~d~~~~~~~~~~~~-p~iiv~NK~Dl~~~~ 309 (1250)
+.+|||||+ +.|. ..++..+..+|++++|+|++++. ..++...+..+...+. |+++|+||+|+.+..
T Consensus 87 i~liDtPG~----------~~f~-~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 87 VSFVDAPGH----------ETLM-ATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred EEEEECCCH----------HHHH-HHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccch
Confidence 899999998 3332 23455667889999999999887 6777777777776664 699999999998654
Q ss_pred chHHHHHHHHHHhcc--CCCCeEEEeecCCCCChHHHHHHHHHHH
Q psy17091 310 QRKIIKNNIKKKLNF--LSFAMFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 310 ~~~~~~~~l~~~l~~--~~~~~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
...+..+++...+.. ....+++++||++|.|+++|++.+...+
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 443334455554432 2347899999999999999998886543
No 487
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.58 E-value=1.7e-14 Score=176.08 Aligned_cols=148 Identities=28% Similarity=0.354 Sum_probs=108.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCC-CcceeeeEEEEEEC------------------CEEEEEEecCCCCc
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYP-GLTRDRHYGEGYIG------------------KKSFIIIDTGGFEP 62 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~-~~T~~~~~~~~~~~------------------~~~~~liDTpG~~~ 62 (1250)
.|.|+++|++|+|||||+|+|++... ....+ ++|++.....+.+. ...+.||||||++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e- 80 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE- 80 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH-
Confidence 47999999999999999999998864 33333 36664333333221 0248899999975
Q ss_pred chhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCcc--------------
Q psy17091 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI-------------- 128 (1250)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~-------------- 128 (1250)
.+......++..+|++++|+|++++....+.+..++++..++|+++|+||+|+.....
T Consensus 81 --------~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~ 152 (590)
T TIGR00491 81 --------AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQ 152 (590)
T ss_pred --------hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhh
Confidence 3444455577899999999999988888888888888888999999999999864210
Q ss_pred ---c-h-----------hHHhcC--------------CCCcEecccccCCchhHHHHHHHH
Q psy17091 129 ---S-L-----------DFYELG--------------IGNPHIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 129 ---~-~-----------~~~~~~--------------~~~~~~iSA~~g~gi~~L~~~i~~ 160 (1250)
. . ++.+.| .-+++++||++|+|+++|++.+..
T Consensus 153 ~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 153 EIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0 0 011111 126789999999999999998864
No 488
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.58 E-value=6.4e-14 Score=153.05 Aligned_cols=205 Identities=19% Similarity=0.213 Sum_probs=156.0
Q ss_pred CCcccccccccCCCCcc-----cCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCccCCCHHHHHHHHH
Q psy17091 625 GCAINCIFCSTGRQGFV-----RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 699 (1250)
Q Consensus 625 GC~~~C~fC~t~~~~~~-----r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GEpl~n~~~v~~~~~ 699 (1250)
=|..+|.||.-|..... .-...++|.+|+-....+.+ .++..+++++|.|-|||.+. .++-+.++
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g---------~ea~~pd~vtis~~GEPTLy-~~L~elI~ 102 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKG---------DEATEPDHVTISLSGEPTLY-PNLGELIE 102 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccc---------cccCCCCEEEEeCCCCcccc-cCHHHHHH
Confidence 59999999986433221 22445667676666555432 12357999999999999996 45666777
Q ss_pred HhhcCCCCCCCCceEEEEecCchhHHHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHHHHhhCCCceE
Q psy17091 700 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMI 779 (1250)
Q Consensus 700 ~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~v 779 (1250)
.+++. +...+.|=|+|..|.+.+-+.+ +-.|.+||.|+|++..++|.....+-.++.|++.+..+.+...+ +.
T Consensus 103 ~~k~~-----g~~~tflvTNgslpdv~~~L~~-~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~-~~ 175 (296)
T COG0731 103 EIKKR-----GKKTTFLVTNGSLPDVLEELKL-PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKG-RT 175 (296)
T ss_pred HHHhc-----CCceEEEEeCCChHHHHHHhcc-CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCC-cE
Confidence 77664 1268999999999776554443 44477999999999999999888889999999999998865223 79
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCCCCC-----CCcHHHHHHHHHHHHhC-CCeE
Q psy17091 780 TFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI-----CSKNSRIKIFAKILMNS-GIFV 849 (1250)
Q Consensus 780 ~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~~~~-----~p~~e~i~~f~~iL~~~-G~~~ 849 (1250)
++|..||+|+||+.++++++|+|++.. -|..|.|=-|--.+.+.|. .|..+.+..|.+.|.++ |+..
T Consensus 176 vir~tlvkg~N~~~e~~~~~a~ll~~~---~Pd~velk~~~rpgas~~~l~~~~~p~~e~~~~f~~~l~~~~~~~~ 248 (296)
T COG0731 176 VIRTTLVKGINDDEEELEEYAELLERI---NPDFVELKTYMRPGASRYRLPRSNMPLHEEVLEFAKELGEELGYEI 248 (296)
T ss_pred EEEEEEeccccCChHHHHHHHHHHHhc---CCCeEEEecCccCChHhhccCccccchhHHHHHHHHHhhcccCeee
Confidence 999999999999999999999999872 3567776544444455555 78889999999999876 7763
No 489
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.58 E-value=4e-14 Score=149.84 Aligned_cols=150 Identities=19% Similarity=0.131 Sum_probs=103.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||++++++... .....+++.+.........+ ..+.+|||||+. ++......++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~ 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD---------EYSILPQKYS 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChH---------hhHHHHHHHH
Confidence 5899999999999999999997753 34444455444445555655 457899999975 3333444567
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++++|.++..+... ..+..+++. .+.|+++|+||+|+...... ..+. ..+ .+++++||+++.
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-AAFLESSARENE 149 (180)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 79999999999987422211 112233332 35799999999998754332 1122 223 367999999999
Q ss_pred chhHHHHHHHHhhCC
Q psy17091 150 GIKNFLENILTIELP 164 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~ 164 (1250)
|+.++++++.+.+..
T Consensus 150 gv~~l~~~l~~~~~~ 164 (180)
T cd04137 150 NVEEAFELLIEEIEK 164 (180)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999886643
No 490
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.58 E-value=2.9e-14 Score=176.00 Aligned_cols=152 Identities=20% Similarity=0.315 Sum_probs=119.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCC--cccccCCCcceeeeEEEEEE-CCEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRD--ALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~--~~v~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.|+++|++++|||||+|+|++... .......|+|.+..+..+.. ++..+.+|||||++ .+...+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe---------~fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE---------KFLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH---------HHHHHHHHHh
Confidence 589999999999999999998542 22334568999887766654 46789999999964 5556677778
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCccc-------hhHH-hcCC--CCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS-------LDFY-ELGI--GNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~D~~~~~~~-------~~~~-~~~~--~~~~~iSA~~g~ 149 (1250)
..+|++++|+|+.+++.+++.+...+++..++| +++|+||+|+.+.+.. .+++ ..++ .+++++||++|.
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 999999999999999888888888888888887 5799999999754322 1222 2232 468999999999
Q ss_pred chhHHHHHHHHhhCC
Q psy17091 150 GIKNFLENILTIELP 164 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~ 164 (1250)
|+++|++.+.....+
T Consensus 153 gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 153 GIDALREHLLQLPER 167 (614)
T ss_pred CCHHHHHHHHHhhcc
Confidence 999999999875543
No 491
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=1.5e-14 Score=182.73 Aligned_cols=145 Identities=21% Similarity=0.227 Sum_probs=121.7
Q ss_pred eeEEEEEeCCCChhhHHHHHHh---CCccee--cc------------CCCCcceeeEEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLL---GENRVI--TY------------DTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~---~~~~~~--~~------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
-.+|+|+|++|+|||||+|+|+ |..... ++ ..+|+|++.....+.|++.+++++||||+.+
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~-- 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD-- 87 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH--
Confidence 4689999999999999999997 321111 22 3679999999999999999999999999833
Q ss_pred cchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhcc
Q psy17091 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF 324 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~ 324 (1250)
|.. .+..+++.+|++++|+|+..+++.++..++..+.+.++|+|+++||||+.+.. .....+++++.++.
T Consensus 88 --------f~~-ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~ 157 (693)
T PRK00007 88 --------FTI-EVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGA 157 (693)
T ss_pred --------HHH-HHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCC
Confidence 322 35677788999999999999999999999999999999999999999998644 56677888888887
Q ss_pred CCCCeEEEeecCCC
Q psy17091 325 LSFAMFNFISAIKL 338 (1250)
Q Consensus 325 ~~~~~iv~iSA~~g 338 (1250)
....+.+++||.++
T Consensus 158 ~~~~~~ipisa~~~ 171 (693)
T PRK00007 158 NPVPIQLPIGAEDD 171 (693)
T ss_pred CeeeEEecCccCCc
Confidence 77778899999876
No 492
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.58 E-value=1.8e-14 Score=150.85 Aligned_cols=146 Identities=20% Similarity=0.197 Sum_probs=100.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
||+++|.+|||||||+|+|++.+.. ....++..+.........+ ..+.+|||||+.... ......++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~---------~~~~~~~~ 70 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD---------RLRPLSYP 70 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc---------ccchhhcC
Confidence 7999999999999999999988742 2222333344444445554 479999999976321 22233457
Q ss_pred cCCEEEEEEeCCCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCCccc----------------hhHH-hcCCCCc
Q psy17091 82 ESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINSSIS----------------LDFY-ELGIGNP 140 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~D~~~~~~~----------------~~~~-~~~~~~~ 140 (1250)
.+|++++|+|.++..+... ..+...+.. .+.|+++|+||+|+...... .++. ..+...+
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence 8999999999986433222 223444443 35899999999998755421 1122 3344478
Q ss_pred EecccccCCchhHHHHHHHH
Q psy17091 141 HIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 141 ~~iSA~~g~gi~~L~~~i~~ 160 (1250)
+++||++|.|++++++.+.+
T Consensus 151 ~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEeecCCCCCHHHHHHHHhh
Confidence 99999999999999998864
No 493
>KOG0079|consensus
Probab=99.57 E-value=1.7e-14 Score=136.28 Aligned_cols=159 Identities=19% Similarity=0.148 Sum_probs=117.5
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
-++..|+|.||||||||+.++... .+..+.+..+..|....++..+|. ++++|||+|+ |.|+.+..
T Consensus 8 LfkllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq----------ErFrtits- 75 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ----------ERFRTITS- 75 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccH----------HHHHHHHH-
Confidence 356889999999999999998865 334445555667888888888775 5677999999 77765544
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHHc--CCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYES--GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
.+++..+++++|+|.+.+.+..+. ++++.+... ..|-++|+||.|+.+.... ..++.+..... -....|++|||
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV--~t~dAr~~A~~-mgie~FETSaK 152 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVV--DTEDARAFALQ-MGIELFETSAK 152 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceee--ehHHHHHHHHh-cCchheehhhh
Confidence 678999999999999999665553 355555543 4788999999998765432 12222222222 23678999999
Q ss_pred CCCChHHHHHHHHHHHhhc
Q psy17091 337 KLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~~ 355 (1250)
...|++..|..|.+.+.+.
T Consensus 153 e~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 153 ENENVEAMFHCITKQVLQA 171 (198)
T ss_pred hcccchHHHHHHHHHHHHH
Confidence 9999999999998876543
No 494
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.57 E-value=3.2e-14 Score=152.54 Aligned_cols=166 Identities=19% Similarity=0.231 Sum_probs=112.6
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCccee-ccCCCC---cceeeEEEEEEE-cCeeEEEEecCCCCCCCcchhhHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVI-TYDTPG---TTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVI 256 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~-~~~~~g---tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~e~~~~~ 256 (1250)
+++|+++|.+|||||||+|+|+|..... .+...+ +|+... .+.. ....+.+|||||+.+.... .+.+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~---~~~~l~- 74 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFP---PDDYLE- 74 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCC---HHHHHH-
Confidence 4789999999999999999999854322 111112 233221 1111 1347899999999764321 233321
Q ss_pred HHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccc---------hHHHHHHH----HHHhc
Q psy17091 257 KTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ---------RKIIKNNI----KKKLN 323 (1250)
Q Consensus 257 ~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---------~~~~~~~l----~~~l~ 323 (1250)
. ..+..+|++++|.| .+++..+..+++.+.+.++|+++|+||||+..... .++..+++ .+.++
T Consensus 75 -~-~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 150 (197)
T cd04104 75 -E-MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ 150 (197)
T ss_pred -H-hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence 1 23567899999865 45789999999999999999999999999964211 22333333 33333
Q ss_pred c--CCCCeEEEeecC--CCCChHHHHHHHHHHHhhccc
Q psy17091 324 F--LSFAMFNFISAI--KLNNINSFMESINHVYDSSII 357 (1250)
Q Consensus 324 ~--~~~~~iv~iSA~--~g~gv~~l~~~i~~~~~~~~~ 357 (1250)
. ....+++.+|+. .+.++..|.+.+...++...+
T Consensus 151 ~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 151 EAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred HcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 2 345789999998 688999999999888876543
No 495
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.57 E-value=5.5e-14 Score=146.46 Aligned_cols=154 Identities=25% Similarity=0.353 Sum_probs=109.3
Q ss_pred EEEEeCCCCcHHHHHHHHHcCC-CcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcch-hhHHHHHHHHHHHHHh--
Q psy17091 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV-KKGIMHEMTKQTKQAI-- 80 (1250)
Q Consensus 5 I~lvG~~nvGKSSL~N~l~~~~-~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~-- 80 (1250)
|+++|.+|+|||||+|+|++.. ....+..++.|.+.... .+++ .+.+|||||+.... .....+.+......++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--EccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999533 34466677777765443 3333 89999999986431 1111223333333333
Q ss_pred -hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-------hhHHh--cCCCCcEecccccCCc
Q psy17091 81 -IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFYE--LGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 -~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-------~~~~~--~~~~~~~~iSA~~g~g 150 (1250)
...+++++++|...........+.+++...+.|+++|+||+|+...... ...+. ....+++++||+++.|
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~ 158 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence 4567899999998776677777888998888999999999998654332 11122 2334678999999999
Q ss_pred hhHHHHHHHHh
Q psy17091 151 IKNFLENILTI 161 (1250)
Q Consensus 151 i~~L~~~i~~~ 161 (1250)
+.++++.+.+.
T Consensus 159 ~~~l~~~l~~~ 169 (170)
T cd01876 159 IDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 496
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.57 E-value=3e-14 Score=160.58 Aligned_cols=113 Identities=27% Similarity=0.367 Sum_probs=88.6
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceec---c--------C------CCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVIT---Y--------D------TPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~---~--------~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 246 (1250)
+|+++|++|+|||||+|+|++....+. + + ..+.|.......+.+++..+++|||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 489999999999999999985322111 0 0 124455555677888999999999999832
Q ss_pred hhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCC
Q psy17091 247 FEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII 307 (1250)
Q Consensus 247 ~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~ 307 (1250)
|. ..+..+++.+|++++|+|++.+...+...+++.+...++|+++|+||+|+..
T Consensus 77 ------f~-~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 77 ------FV-GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRER 130 (268)
T ss_pred ------HH-HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCC
Confidence 21 2345677889999999999999888888899888889999999999999764
No 497
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.57 E-value=3e-14 Score=161.86 Aligned_cols=160 Identities=25% Similarity=0.337 Sum_probs=114.7
Q ss_pred EEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEE------------------------CCEEEEEEecCCC
Q psy17091 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI------------------------GKKSFIIIDTGGF 60 (1250)
Q Consensus 5 I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~------------------------~~~~~~liDTpG~ 60 (1250)
|++||.||||||||||+|++.+. .++++|++|+++..+...+ ....+.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 68999999999999999998874 5899999999998876654 2257999999998
Q ss_pred CcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCC------------CCh-hh-----HHH-------------------
Q psy17091 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG------------LVE-QD-----KLI------------------- 103 (1250)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~------------~~~-~~-----~~~------------------- 103 (1250)
...... .+.+..+++..+++||++++|+|+... ..+ .+ .++
T Consensus 80 v~ga~~--~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 80 VPGAHE--GKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCccc--hhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643211 234556778889999999999998631 000 00 000
Q ss_pred -------------------------HHHHH------------------------hcCCCEEEEEeCCCCCCCccchhHH-
Q psy17091 104 -------------------------TNFLR------------------------KSGQPIVLVINKSENINSSISLDFY- 133 (1250)
Q Consensus 104 -------------------------~~~l~------------------------~~~~p~ilv~NK~D~~~~~~~~~~~- 133 (1250)
..+|+ ...+|+++|+||+|+.......+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~ 237 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLR 237 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHH
Confidence 01110 1237999999999976443332211
Q ss_pred -hcCCCCcEecccccCCchhHHHH-HHHHhhCCccc
Q psy17091 134 -ELGIGNPHIISALYGNGIKNFLE-NILTIELPYKK 167 (1250)
Q Consensus 134 -~~~~~~~~~iSA~~g~gi~~L~~-~i~~~l~~~~~ 167 (1250)
......++++||+.+.++.+|.+ .+.+.+++...
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~ 273 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSD 273 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCC
Confidence 23345789999999999999998 69999987654
No 498
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.56 E-value=5.6e-14 Score=154.31 Aligned_cols=113 Identities=19% Similarity=0.295 Sum_probs=91.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCccc-----------------ccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALV-----------------ANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v-----------------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 66 (1250)
.|+++|++|+|||||+++|+.....+. ....++|.......+.|++..+.+|||||+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~----- 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHM----- 75 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCcc-----
Confidence 489999999999999999986432211 1123556667777888999999999999986
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q psy17091 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN 125 (1250)
Q Consensus 67 ~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~ 125 (1250)
.+...+..+++.+|++++|+|+.++.......+.+++.+.++|+++|+||+|+..
T Consensus 76 ----~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 76 ----DFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred ----chHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 3445567788999999999999998887777888888888999999999999864
No 499
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.56 E-value=4.4e-14 Score=173.53 Aligned_cols=157 Identities=20% Similarity=0.284 Sum_probs=107.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCC-CcceeeEEEEEEEc------C------------eeEEEEecCCCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-GTTRDSIKSLFEYN------N------------KKYILIDTAGIR 241 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~------~------------~~~~liDTpG~~ 241 (1250)
++..|+++|++|+|||||+|+|.+.. ..+..+ ++|++.....+.++ + ..+++|||||+.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 45679999999999999999998754 333343 34443221111111 0 127899999994
Q ss_pred CCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccc-----------
Q psy17091 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ----------- 310 (1250)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~----------- 310 (1250)
.|...+. ..++.+|++++|+|+++++..++...+..+...++|+++++||+|+.+...
T Consensus 83 ----------~f~~~~~-~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~ 151 (586)
T PRK04004 83 ----------AFTNLRK-RGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESI 151 (586)
T ss_pred ----------HHHHHHH-HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence 3333332 455789999999999999999999988888888999999999999853100
Q ss_pred -------hHH---HHHHHHHHhc--------------cCCCCeEEEeecCCCCChHHHHHHHHH
Q psy17091 311 -------RKI---IKNNIKKKLN--------------FLSFAMFNFISAIKLNNINSFMESINH 350 (1250)
Q Consensus 311 -------~~~---~~~~l~~~l~--------------~~~~~~iv~iSA~~g~gv~~l~~~i~~ 350 (1250)
... ...++...+. +....+++++||++|.|+++|++.+..
T Consensus 152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 000 1111111111 123578999999999999999988743
No 500
>KOG0095|consensus
Probab=99.56 E-value=4.1e-14 Score=133.61 Aligned_cols=156 Identities=21% Similarity=0.174 Sum_probs=111.5
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
-+||+++|..|||||.|+.+++..-. ..+.-..+..|....+++.+|. ++++|||+|+ |+|.. -+.
T Consensus 7 lfkivlvgnagvgktclvrrftqglf-ppgqgatigvdfmiktvev~gekiklqiwdtagq----------erfrs-itq 74 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ----------ERFRS-ITQ 74 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCC-CCCCCceeeeeEEEEEEEECCeEEEEEEeeccch----------HHHHH-HHH
Confidence 48999999999999999999985432 2222333445666777788776 5667999999 55543 345
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
.+++.|+.+++|+|++...+..-+ +++..+.+ .+.--|+|+||+|+.++.+. .+++.+.+.......++++||
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrev---p~qigeefs~~qdmyfletsa 151 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREV---PQQIGEEFSEAQDMYFLETSA 151 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhh---hHHHHHHHHHhhhhhhhhhcc
Confidence 788999999999999987665443 45666654 34556899999999765333 233333332233467889999
Q ss_pred CCCCChHHHHHHHHHHH
Q psy17091 336 IKLNNINSFMESINHVY 352 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~ 352 (1250)
+...|+++||..+...+
T Consensus 152 kea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 152 KEADNVEKLFLDLACRL 168 (213)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 99999999998876554
Done!