Query psy17091
Match_columns 1250
No_of_seqs 967 out of 7991
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 21:39:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfa_A Ribosomal RNA large sub 100.0 5.2E-83 1.8E-87 739.3 35.4 357 506-872 5-364 (404)
2 2hjg_A GTP-binding protein ENG 100.0 5.1E-68 1.8E-72 638.0 34.6 429 1-438 2-433 (436)
3 4dcu_A GTP-binding protein ENG 100.0 1.5E-65 5.1E-70 620.2 33.5 428 2-438 23-453 (456)
4 1mky_A Probable GTP-binding pr 100.0 1.4E-64 4.9E-69 608.6 40.6 429 2-438 1-436 (439)
5 4e51_A Histidine--tRNA ligase; 100.0 5E-60 1.7E-64 567.7 41.6 420 819-1244 32-458 (467)
6 3lc0_A Histidyl-tRNA synthetas 100.0 2.5E-58 8.6E-63 549.0 34.8 403 813-1236 23-446 (456)
7 1h4v_B Histidyl-tRNA synthetas 100.0 9.1E-57 3.1E-61 538.5 45.4 391 837-1243 26-419 (421)
8 3net_A Histidyl-tRNA synthetas 100.0 3.7E-58 1.3E-62 552.5 29.3 382 836-1243 34-463 (465)
9 1htt_A Histidyl-tRNA synthetas 100.0 2.8E-57 9.5E-62 543.4 36.1 392 837-1243 27-421 (423)
10 4g85_A Histidine-tRNA ligase, 100.0 4.2E-56 1.4E-60 544.0 38.2 389 836-1245 89-514 (517)
11 1wu7_A Histidyl-tRNA synthetas 100.0 5.8E-56 2E-60 532.5 36.2 383 837-1244 29-425 (434)
12 4g84_A Histidine--tRNA ligase, 100.0 1E-55 3.5E-60 536.9 37.0 389 836-1245 36-461 (464)
13 1qe0_A Histidyl-tRNA synthetas 100.0 7.4E-54 2.5E-58 513.5 31.8 390 836-1241 24-419 (420)
14 3od1_A ATP phosphoribosyltrans 100.0 1.9E-49 6.4E-54 464.8 35.1 345 836-1207 32-394 (400)
15 3rac_A Histidine-tRNA ligase; 100.0 1.5E-43 5.1E-48 411.1 26.1 286 836-1133 45-367 (373)
16 1z7m_A ATP phosphoribosyltrans 100.0 1.4E-43 4.8E-48 407.8 23.8 283 836-1134 44-339 (344)
17 2j3l_A Prolyl-tRNA synthetase; 100.0 1.3E-38 4.5E-43 394.9 29.8 385 837-1245 56-565 (572)
18 1evl_A Threonyl-tRNA synthetas 100.0 6.3E-38 2.2E-42 371.7 27.5 329 837-1247 39-394 (401)
19 1usy_A ATP phosphoribosyltrans 100.0 4.5E-39 1.5E-43 359.4 15.2 255 833-1125 7-273 (275)
20 2i4l_A Proline-tRNA ligase; al 100.0 1.3E-39 4.3E-44 391.2 5.8 361 836-1240 75-457 (458)
21 1nyr_A Threonyl-tRNA synthetas 100.0 1.2E-35 4E-40 371.6 27.1 339 837-1247 280-642 (645)
22 1qf6_A THRRS, threonyl-tRNA sy 100.0 2.7E-34 9.1E-39 356.8 32.4 346 824-1247 262-635 (642)
23 3a32_A Probable threonyl-tRNA 100.0 4.7E-36 1.6E-40 361.5 10.7 346 837-1244 58-446 (471)
24 3uh0_A Threonyl-tRNA synthetas 100.0 1.7E-33 5.9E-38 335.2 29.9 368 789-1245 30-457 (460)
25 1hc7_A Prolyl-tRNA synthetase; 100.0 5.4E-34 1.9E-38 341.5 24.8 331 816-1244 27-385 (477)
26 1nj8_A Proline-tRNA synthetase 100.0 1.9E-33 6.4E-38 336.1 24.7 331 815-1244 19-379 (459)
27 2zt5_A Glycyl-tRNA synthetase; 100.0 1E-32 3.6E-37 341.6 21.7 370 838-1245 111-657 (693)
28 1nj1_A PROR, proline-tRNA synt 100.0 2.3E-32 8E-37 329.3 22.2 324 822-1244 60-412 (501)
29 4hr2_A Nucleoside diphosphate 100.0 3.4E-31 1.1E-35 259.0 9.2 129 422-550 7-137 (145)
30 3evo_A NDP kinase, NDK, nucleo 100.0 1.3E-30 4.4E-35 256.1 9.2 131 420-550 4-137 (146)
31 3mpd_A Nucleoside diphosphate 100.0 2.4E-30 8.3E-35 255.6 9.6 129 422-550 5-135 (151)
32 4fkx_A NDK B, nucleoside dipho 100.0 3.1E-30 1.1E-34 255.9 9.8 128 423-550 12-141 (161)
33 3q8u_A Nucleoside diphosphate 100.0 3.2E-30 1.1E-34 255.6 9.6 128 423-550 2-131 (157)
34 1wkj_A Nucleoside diphosphate 100.0 3.8E-30 1.3E-34 251.5 9.7 128 423-550 2-131 (137)
35 3fkb_A NDP kinase, NDK, nucleo 100.0 4.3E-30 1.5E-34 254.5 9.7 129 422-550 8-138 (155)
36 1k44_A Nucleoside diphosphate 100.0 5.6E-30 1.9E-34 249.9 9.1 128 423-550 3-133 (136)
37 1nhk_R Nucleoside diphosphate 100.0 6.3E-30 2.1E-34 251.4 9.2 128 423-550 3-132 (144)
38 3ztp_A Nucleoside diphosphate 100.0 4.5E-30 1.5E-34 252.2 8.0 129 422-550 3-136 (142)
39 3l7u_A Nucleoside diphosphate 100.0 7.5E-30 2.6E-34 255.5 9.6 130 421-550 23-154 (172)
40 2hur_A NDK, nucleoside diphosp 100.0 8.3E-30 2.8E-34 250.3 9.4 128 423-550 3-132 (142)
41 2vu5_A Nucleoside diphosphate 100.0 9.3E-30 3.2E-34 251.8 9.0 128 423-550 2-131 (148)
42 1pku_A Nucleoside diphosphate 100.0 1.2E-29 4.2E-34 251.1 9.8 133 423-556 3-137 (150)
43 1u8w_A Nucleoside diphosphate 100.0 1.2E-29 4E-34 250.9 9.6 135 423-558 2-138 (149)
44 1xiq_A Nucleoside diphosphate 100.0 1.2E-29 4E-34 252.0 9.1 130 421-550 8-139 (157)
45 2yx0_A Radical SAM enzyme; pre 100.0 6.6E-29 2.2E-33 288.9 16.0 262 561-849 17-311 (342)
46 1ehw_A NDPK H4, nucleoside dip 100.0 2.2E-29 7.7E-34 250.9 10.0 128 423-550 25-154 (162)
47 3js9_A Nucleoside diphosphate 100.0 2E-29 6.7E-34 249.7 9.4 130 421-550 8-139 (156)
48 1nb2_A Nucleoside diphosphate 100.0 1.3E-29 4.3E-34 251.0 7.5 128 423-550 3-132 (150)
49 3r9l_A Nucleoside diphosphate 100.0 5.8E-30 2E-34 253.6 5.0 129 422-550 7-137 (155)
50 3bbb_A Nucleoside diphosphate 100.0 2.8E-29 9.4E-34 248.9 9.9 128 423-550 4-133 (151)
51 1s57_A Nucleoside diphosphate 100.0 2.6E-29 8.9E-34 249.6 9.6 128 423-550 6-135 (153)
52 1zs6_A Nucleoside diphosphate 100.0 4.3E-29 1.5E-33 251.1 10.0 131 420-550 19-151 (169)
53 1w7w_A Nucleoside diphosphate 100.0 3.7E-29 1.3E-33 253.8 9.3 132 419-550 29-162 (182)
54 2az3_A Nucleoside diphosphate 100.0 3.3E-29 1.1E-33 250.6 8.8 132 419-550 5-140 (164)
55 3b54_A NDK, NDP kinase, nucleo 100.0 3.5E-29 1.2E-33 249.6 8.4 131 420-550 11-143 (161)
56 1ati_A Glycyl-tRNA synthetase; 100.0 7.9E-28 2.7E-32 290.2 22.0 282 887-1244 180-503 (505)
57 2dxe_A Nucleoside diphosphate 100.0 5.4E-29 1.9E-33 248.8 9.1 130 422-551 7-141 (160)
58 4hvc_A Bifunctional glutamate/ 99.9 6.1E-27 2.1E-31 280.0 25.8 334 816-1244 44-412 (519)
59 4dz6_A Nucleoside diphosphate 99.9 1.3E-28 4.6E-33 250.5 6.4 129 422-550 26-171 (190)
60 3ial_A Prolyl-tRNA synthetase; 99.9 3E-26 1E-30 272.9 21.7 325 815-1236 36-398 (518)
61 1xqi_A Nucleoside diphosphate 99.9 9.6E-27 3.3E-31 239.6 7.0 129 422-550 15-188 (195)
62 2z2u_A UPF0026 protein MJ0257; 99.9 2.8E-24 9.4E-29 246.7 12.3 258 564-849 2-288 (311)
63 3c8f_A Pyruvate formate-lyase 99.9 1.7E-21 5.7E-26 215.5 20.6 216 604-850 8-244 (245)
64 3iev_A GTP-binding protein ERA 99.9 2.4E-21 8.2E-26 221.2 22.2 175 180-357 8-185 (308)
65 1wf3_A GTP-binding protein; GT 99.9 1.5E-21 5E-26 221.6 18.9 166 181-354 6-173 (301)
66 2dyk_A GTP-binding protein; GT 99.9 6.5E-21 2.2E-25 195.7 19.1 160 2-163 1-161 (161)
67 4dhe_A Probable GTP-binding pr 99.9 3.1E-21 1.1E-25 210.1 16.7 175 181-355 28-212 (223)
68 1wf3_A GTP-binding protein; GT 99.9 4.3E-21 1.5E-25 217.7 18.0 163 3-166 8-175 (301)
69 2gj8_A MNME, tRNA modification 99.9 3.1E-21 1.1E-25 201.1 15.2 161 181-354 3-166 (172)
70 3ikl_A DNA polymerase subunit 99.9 4.4E-20 1.5E-24 214.9 25.7 297 838-1245 114-448 (459)
71 1svi_A GTP-binding protein YSX 99.8 2.9E-20 9.9E-25 197.7 21.1 169 181-353 22-194 (195)
72 4djt_A GTP-binding nuclear pro 99.8 6.1E-22 2.1E-26 214.9 7.0 201 180-399 9-217 (218)
73 3pqc_A Probable GTP-binding pr 99.8 5.5E-20 1.9E-24 195.2 21.1 171 181-354 22-194 (195)
74 1g5h_A Mitochondrial DNA polym 99.8 6.7E-21 2.3E-25 225.9 14.8 306 844-1245 80-438 (454)
75 3ec1_A YQEH GTPase; atnos1, at 99.8 5.3E-22 1.8E-26 231.7 3.3 241 71-342 60-319 (369)
76 3iev_A GTP-binding protein ERA 99.8 6.6E-20 2.3E-24 209.3 20.5 164 4-167 12-185 (308)
77 1mky_A Probable GTP-binding pr 99.8 2.3E-20 7.7E-25 224.1 17.1 163 183-353 2-165 (439)
78 3i8s_A Ferrous iron transport 99.8 1.4E-20 4.8E-25 211.2 14.0 183 182-372 3-189 (274)
79 2gj8_A MNME, tRNA modification 99.8 3.7E-20 1.3E-24 193.0 15.8 159 3-164 5-166 (172)
80 2qu8_A Putative nucleolar GTP- 99.8 7.5E-20 2.6E-24 200.0 18.5 173 181-356 28-207 (228)
81 1xzp_A Probable tRNA modificat 99.8 1.4E-20 4.8E-25 225.7 13.4 161 182-353 243-404 (482)
82 2dyk_A GTP-binding protein; GT 99.8 4.2E-20 1.4E-24 189.7 14.9 159 183-352 2-160 (161)
83 3gee_A MNME, tRNA modification 99.8 1.3E-20 4.3E-25 226.1 12.6 162 181-353 232-397 (476)
84 3h2y_A GTPase family protein; 99.8 6.2E-22 2.1E-26 230.8 1.0 229 71-323 58-303 (368)
85 3iby_A Ferrous iron transport 99.8 2.5E-20 8.7E-25 206.6 13.8 161 183-351 2-164 (256)
86 3a1s_A Iron(II) transport prot 99.8 8.1E-20 2.8E-24 202.9 16.8 163 181-353 4-166 (258)
87 2wji_A Ferrous iron transport 99.8 1.4E-19 4.6E-24 187.3 15.5 159 182-352 3-163 (165)
88 3iby_A Ferrous iron transport 99.8 8.6E-20 3E-24 202.3 14.1 155 2-161 1-164 (256)
89 1ega_A Protein (GTP-binding pr 99.8 1.8E-19 6.3E-24 204.8 16.0 169 181-355 7-176 (301)
90 3geh_A MNME, tRNA modification 99.8 5.5E-20 1.9E-24 219.7 10.9 163 181-355 223-385 (462)
91 4dhe_A Probable GTP-binding pr 99.8 1.8E-19 6.2E-24 196.1 13.8 164 2-165 29-212 (223)
92 3b1v_A Ferrous iron uptake tra 99.8 1.3E-19 4.5E-24 202.2 12.5 162 182-354 3-164 (272)
93 3k53_A Ferrous iron transport 99.8 5.6E-19 1.9E-23 198.2 17.7 165 182-356 3-168 (271)
94 2wji_A Ferrous iron transport 99.8 6.5E-19 2.2E-23 182.1 16.2 155 3-162 4-163 (165)
95 1ega_A Protein (GTP-binding pr 99.8 1.8E-19 6.3E-24 204.8 12.7 163 3-166 9-177 (301)
96 3qq5_A Small GTP-binding prote 99.8 1.3E-19 4.4E-24 213.5 11.6 164 181-355 33-197 (423)
97 2lkc_A Translation initiation 99.8 5.2E-19 1.8E-23 184.8 14.9 163 181-356 7-173 (178)
98 2hjg_A GTP-binding protein ENG 99.8 8.9E-20 3E-24 218.7 9.7 161 183-353 4-164 (436)
99 1puj_A YLQF, conserved hypothe 99.8 6.2E-19 2.1E-23 197.7 15.7 172 55-244 4-179 (282)
100 3i8s_A Ferrous iron transport 99.8 4E-19 1.4E-23 199.3 12.7 158 2-164 3-169 (274)
101 2g6b_A RAS-related protein RAB 99.8 2.1E-18 7.3E-23 180.5 17.2 164 180-358 8-178 (180)
102 3a1s_A Iron(II) transport prot 99.8 1.5E-18 5E-23 192.8 16.7 156 3-163 6-166 (258)
103 4bas_A ADP-ribosylation factor 99.8 1.7E-18 5.7E-23 184.6 16.3 162 180-356 15-191 (199)
104 3gee_A MNME, tRNA modification 99.8 2.6E-19 9E-24 214.6 11.1 158 3-163 234-397 (476)
105 1zj6_A ADP-ribosylation factor 99.8 3.5E-18 1.2E-22 180.4 18.4 161 181-356 15-180 (187)
106 1upt_A ARL1, ADP-ribosylation 99.8 1.3E-18 4.5E-23 180.3 14.8 159 181-354 6-169 (171)
107 3pqc_A Probable GTP-binding pr 99.8 4.4E-18 1.5E-22 180.5 19.2 159 2-163 23-193 (195)
108 1fzq_A ADP-ribosylation factor 99.8 2.8E-18 9.4E-23 180.3 17.3 158 181-353 15-177 (181)
109 2wjg_A FEOB, ferrous iron tran 99.8 1.6E-18 5.4E-23 183.1 15.2 164 181-356 6-171 (188)
110 1xzp_A Probable tRNA modificat 99.8 5.1E-19 1.7E-23 212.2 11.2 158 3-163 244-404 (482)
111 1svi_A GTP-binding protein YSX 99.8 4E-18 1.4E-22 181.1 16.9 159 2-163 23-194 (195)
112 1ksh_A ARF-like protein 2; sma 99.8 4.9E-18 1.7E-22 179.0 17.4 159 181-354 17-180 (186)
113 1zd9_A ADP-ribosylation factor 99.8 4.7E-18 1.6E-22 179.7 17.3 161 180-354 20-185 (188)
114 4dsu_A GTPase KRAS, isoform 2B 99.8 5.6E-18 1.9E-22 178.7 17.6 158 181-355 3-167 (189)
115 1r8s_A ADP-ribosylation factor 99.8 4.2E-18 1.4E-22 175.3 16.2 156 183-353 1-161 (164)
116 2xtp_A GTPase IMAP family memb 99.8 3.3E-18 1.1E-22 190.9 16.6 174 180-356 20-210 (260)
117 1x3s_A RAS-related protein RAB 99.8 3E-18 1E-22 181.9 15.2 153 3-166 16-180 (195)
118 2qu8_A Putative nucleolar GTP- 99.8 5.5E-18 1.9E-22 185.2 17.5 161 3-164 30-205 (228)
119 2h17_A ADP-ribosylation factor 99.8 3.3E-18 1.1E-22 179.7 14.9 156 180-350 19-179 (181)
120 3reg_A RHO-like small GTPase; 99.8 1.6E-18 5.4E-23 184.3 12.6 160 180-355 21-189 (194)
121 2nzj_A GTP-binding protein REM 99.8 4.5E-18 1.5E-22 177.0 15.8 159 181-354 3-169 (175)
122 2h57_A ADP-ribosylation factor 99.8 3.3E-18 1.1E-22 181.1 14.8 161 180-354 19-187 (190)
123 3tw8_B RAS-related protein RAB 99.8 6.1E-18 2.1E-22 176.9 16.6 161 180-356 7-173 (181)
124 2x77_A ADP-ribosylation factor 99.8 7.9E-18 2.7E-22 178.0 17.5 159 181-354 21-184 (189)
125 2aka_B Dynamin-1; fusion prote 99.8 1.9E-18 6.6E-23 197.0 13.7 192 181-374 25-282 (299)
126 3q72_A GTP-binding protein RAD 99.8 3.8E-18 1.3E-22 176.0 14.4 155 182-354 2-164 (166)
127 2il1_A RAB12; G-protein, GDP, 99.8 5.3E-18 1.8E-22 179.9 15.7 160 180-353 24-189 (192)
128 3lxw_A GTPase IMAP family memb 99.8 1.3E-17 4.6E-22 184.0 19.1 181 180-363 19-217 (247)
129 2fh5_B SR-beta, signal recogni 99.8 8.5E-18 2.9E-22 181.6 17.1 156 181-351 6-213 (214)
130 3b1v_A Ferrous iron uptake tra 99.8 1.4E-18 4.7E-23 194.0 11.1 155 2-162 3-162 (272)
131 1moz_A ARL1, ADP-ribosylation 99.8 5.5E-18 1.9E-22 177.9 15.1 159 181-354 17-180 (183)
132 3ihw_A Centg3; RAS, centaurin, 99.8 5.4E-18 1.8E-22 178.7 14.8 157 180-355 18-181 (184)
133 2lkc_A Translation initiation 99.8 1.5E-18 5.1E-23 181.3 10.4 152 2-163 8-170 (178)
134 2b6h_A ADP-ribosylation factor 99.8 1E-17 3.5E-22 177.8 16.9 159 180-353 27-190 (192)
135 3t5g_A GTP-binding protein RHE 99.8 1.7E-18 5.9E-23 181.6 10.7 149 3-163 7-168 (181)
136 1f6b_A SAR1; gtpases, N-termin 99.7 8.8E-18 3E-22 179.2 16.0 156 181-351 24-196 (198)
137 3can_A Pyruvate-formate lyase- 99.7 8.3E-18 2.8E-22 176.8 15.5 156 678-851 6-180 (182)
138 1wb1_A Translation elongation 99.7 6.1E-18 2.1E-22 204.2 16.4 163 180-353 17-188 (482)
139 2hxs_A RAB-26, RAS-related pro 99.7 9.1E-18 3.1E-22 175.3 15.6 159 181-355 5-174 (178)
140 1wms_A RAB-9, RAB9, RAS-relate 99.7 2.2E-17 7.7E-22 172.2 18.2 159 181-354 6-174 (177)
141 1g16_A RAS-related protein SEC 99.7 6.2E-18 2.1E-22 175.0 13.7 157 182-354 3-165 (170)
142 2q3h_A RAS homolog gene family 99.7 7.8E-18 2.7E-22 179.9 14.9 160 180-355 18-196 (201)
143 3q85_A GTP-binding protein REM 99.7 1.3E-17 4.6E-22 172.5 16.0 158 182-354 2-167 (169)
144 3j2k_7 ERF3, eukaryotic polype 99.7 9.9E-18 3.4E-22 200.3 17.2 156 180-346 15-217 (439)
145 3tkl_A RAS-related protein RAB 99.7 1.3E-17 4.4E-22 177.2 16.2 161 180-356 14-181 (196)
146 4dkx_A RAS-related protein RAB 99.7 6.4E-18 2.2E-22 182.2 13.9 158 181-354 12-176 (216)
147 2j1l_A RHO-related GTP-binding 99.7 1.5E-17 5.1E-22 179.8 16.8 162 181-355 33-210 (214)
148 4dcu_A GTP-binding protein ENG 99.7 7.1E-18 2.4E-22 203.4 15.8 161 3-163 196-368 (456)
149 1kao_A RAP2A; GTP-binding prot 99.7 1.4E-17 4.8E-22 171.5 15.9 156 182-354 3-166 (167)
150 2iwr_A Centaurin gamma 1; ANK 99.7 6.1E-18 2.1E-22 176.8 13.3 152 181-354 6-169 (178)
151 1m2o_B GTP-binding protein SAR 99.7 5.7E-18 2E-22 179.4 13.1 151 181-350 22-188 (190)
152 2fn4_A P23, RAS-related protei 99.7 1.8E-17 6.2E-22 173.4 16.6 159 181-356 8-174 (181)
153 3geh_A MNME, tRNA modification 99.7 1.6E-18 5.4E-23 207.1 9.6 159 3-164 225-384 (462)
154 4gzl_A RAS-related C3 botulinu 99.7 4.7E-18 1.6E-22 182.3 12.3 159 180-351 28-202 (204)
155 2wjg_A FEOB, ferrous iron tran 99.7 1.2E-17 4.1E-22 176.3 15.2 159 3-166 8-171 (188)
156 1z0j_A RAB-22, RAS-related pro 99.7 7.6E-18 2.6E-22 174.3 13.3 155 181-352 5-167 (170)
157 1c1y_A RAS-related protein RAP 99.7 1.6E-17 5.4E-22 171.3 15.5 155 182-352 3-165 (167)
158 3t5g_A GTP-binding protein RHE 99.7 1.6E-17 5.4E-22 174.2 15.7 159 181-356 5-171 (181)
159 3con_A GTPase NRAS; structural 99.7 3E-17 1E-21 173.6 17.9 159 180-355 19-184 (190)
160 1u8z_A RAS-related protein RAL 99.7 4.3E-17 1.5E-21 168.0 18.4 156 181-353 3-166 (168)
161 2g3y_A GTP-binding protein GEM 99.7 3E-17 1E-21 176.4 17.9 160 180-353 35-202 (211)
162 1ek0_A Protein (GTP-binding pr 99.7 5E-18 1.7E-22 175.6 11.0 155 182-352 3-167 (170)
163 2fg5_A RAB-22B, RAS-related pr 99.7 8.9E-18 3.1E-22 178.2 13.2 161 180-354 21-186 (192)
164 2g6b_A RAS-related protein RAB 99.7 2.5E-17 8.5E-22 172.3 16.2 152 3-164 11-174 (180)
165 3t1o_A Gliding protein MGLA; G 99.7 6.3E-18 2.2E-22 179.6 11.8 160 180-354 12-192 (198)
166 2hup_A RAS-related protein RAB 99.7 2.5E-17 8.5E-22 176.2 16.4 160 180-354 27-193 (201)
167 2ce2_X GTPase HRAS; signaling 99.7 7.1E-17 2.4E-21 165.9 19.3 155 182-353 3-164 (166)
168 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.4E-17 4.9E-22 175.1 14.2 161 181-354 4-180 (186)
169 2ew1_A RAS-related protein RAB 99.7 2.8E-17 9.6E-22 175.7 16.5 159 180-354 24-189 (201)
170 2efe_B Small GTP-binding prote 99.7 2.6E-17 9E-22 172.3 15.9 159 180-354 10-175 (181)
171 3r7w_A Gtpase1, GTP-binding pr 99.7 3.8E-17 1.3E-21 186.4 18.4 164 182-352 3-179 (307)
172 4dkx_A RAS-related protein RAB 99.7 1.2E-17 4.2E-22 179.9 13.5 152 3-165 14-177 (216)
173 1z2a_A RAS-related protein RAB 99.7 2E-17 7E-22 170.7 14.7 157 181-353 4-166 (168)
174 3cph_A RAS-related protein SEC 99.7 1.7E-17 5.8E-22 178.9 14.6 158 181-354 19-182 (213)
175 2bme_A RAB4A, RAS-related prot 99.7 2.7E-17 9.1E-22 173.2 15.8 159 180-354 8-173 (186)
176 1f60_A Elongation factor EEF1A 99.7 9.4E-19 3.2E-23 210.4 5.1 187 181-379 6-237 (458)
177 1wms_A RAB-9, RAB9, RAS-relate 99.7 4.3E-17 1.5E-21 170.0 17.0 152 3-164 8-174 (177)
178 3cbq_A GTP-binding protein REM 99.7 3.4E-17 1.2E-21 174.2 16.4 161 180-355 21-189 (195)
179 3tkl_A RAS-related protein RAB 99.7 3.8E-17 1.3E-21 173.6 16.8 151 3-164 17-179 (196)
180 3bc1_A RAS-related protein RAB 99.7 3.7E-17 1.3E-21 173.1 16.6 159 180-354 9-185 (195)
181 3tw8_B RAS-related protein RAB 99.7 1.4E-17 4.9E-22 174.1 13.3 150 3-165 10-172 (181)
182 3q72_A GTP-binding protein RAD 99.7 1.8E-17 6.3E-22 170.8 13.9 148 2-162 2-162 (166)
183 3k53_A Ferrous iron transport 99.7 1.7E-17 6E-22 186.1 14.8 157 2-163 3-165 (271)
184 2atx_A Small GTP binding prote 99.7 1.1E-17 3.8E-22 177.6 12.5 156 181-352 17-191 (194)
185 1r8s_A ADP-ribosylation factor 99.7 2.3E-17 7.9E-22 169.7 14.5 147 4-163 2-161 (164)
186 2y8e_A RAB-protein 6, GH09086P 99.7 2.6E-17 8.9E-22 171.8 15.0 157 181-353 13-176 (179)
187 2cxx_A Probable GTP-binding pr 99.7 4.7E-17 1.6E-21 171.8 17.1 167 183-356 2-186 (190)
188 2fu5_C RAS-related protein RAB 99.7 1.2E-17 4E-22 175.5 12.3 158 181-354 7-171 (183)
189 3clv_A RAB5 protein, putative; 99.7 3.6E-17 1.2E-21 174.8 16.3 157 181-354 6-204 (208)
190 1z08_A RAS-related protein RAB 99.7 3.1E-17 1.1E-21 169.8 15.3 158 180-353 4-168 (170)
191 3lvq_E ARF-GAP with SH3 domain 99.7 1.2E-17 4.2E-22 204.3 14.1 168 181-363 321-493 (497)
192 1r2q_A RAS-related protein RAB 99.7 2E-17 7E-22 170.9 13.7 156 181-353 5-168 (170)
193 3lxx_A GTPase IMAP family memb 99.7 7.7E-17 2.6E-21 177.4 19.0 177 180-359 27-219 (239)
194 2a9k_A RAS-related protein RAL 99.7 9.1E-17 3.1E-21 168.9 18.7 159 180-354 16-181 (187)
195 2il1_A RAB12; G-protein, GDP, 99.7 3.5E-17 1.2E-21 173.6 15.5 150 3-162 27-188 (192)
196 2gf9_A RAS-related protein RAB 99.7 4.2E-17 1.4E-21 172.4 16.0 159 180-354 20-185 (189)
197 2nzj_A GTP-binding protein REM 99.7 2.1E-17 7.2E-22 171.9 13.5 151 3-163 5-168 (175)
198 2bov_A RAla, RAS-related prote 99.7 1E-16 3.5E-21 171.7 19.2 157 181-354 13-177 (206)
199 2j0v_A RAC-like GTP-binding pr 99.7 2.8E-17 9.7E-22 177.2 14.9 160 181-356 8-182 (212)
200 2a5j_A RAS-related protein RAB 99.7 2.7E-17 9.2E-22 174.3 14.3 159 180-354 19-184 (191)
201 1z06_A RAS-related protein RAB 99.7 3.2E-17 1.1E-21 173.3 14.8 159 180-353 18-187 (189)
202 2p5s_A RAS and EF-hand domain 99.7 2.9E-17 9.8E-22 175.3 14.5 157 180-353 26-196 (199)
203 2e87_A Hypothetical protein PH 99.7 6.3E-17 2.1E-21 188.8 18.4 249 111-369 88-351 (357)
204 1zbd_A Rabphilin-3A; G protein 99.7 1.1E-16 3.9E-21 171.1 19.0 158 181-354 7-171 (203)
205 1x3s_A RAS-related protein RAB 99.7 5.7E-17 1.9E-21 172.0 16.5 161 180-356 13-180 (195)
206 3kkq_A RAS-related protein M-R 99.7 4.8E-17 1.7E-21 170.8 15.7 157 180-353 16-181 (183)
207 1fzq_A ADP-ribosylation factor 99.7 4.1E-17 1.4E-21 171.4 15.0 148 3-163 17-177 (181)
208 2bcg_Y Protein YP2, GTP-bindin 99.7 1E-16 3.6E-21 171.9 18.5 160 180-355 6-172 (206)
209 3t5d_A Septin-7; GTP-binding p 99.7 2.9E-17 1E-21 184.5 14.6 170 182-353 8-203 (274)
210 3tr5_A RF-3, peptide chain rel 99.7 1.9E-17 6.5E-22 201.1 14.0 130 181-322 12-162 (528)
211 2erx_A GTP-binding protein DI- 99.7 9.1E-17 3.1E-21 166.4 17.2 157 182-355 3-168 (172)
212 1z0f_A RAB14, member RAS oncog 99.7 9.4E-17 3.2E-21 167.6 17.4 158 180-353 13-177 (179)
213 2xtp_A GTPase IMAP family memb 99.7 5.1E-17 1.7E-21 181.2 16.2 160 3-165 23-209 (260)
214 2efe_B Small GTP-binding prote 99.7 6.2E-17 2.1E-21 169.4 15.9 152 3-165 13-176 (181)
215 2ew1_A RAS-related protein RAB 99.7 5.6E-17 1.9E-21 173.4 15.8 151 3-164 27-189 (201)
216 2elf_A Protein translation elo 99.7 5.6E-17 1.9E-21 188.9 17.0 149 184-354 23-180 (370)
217 1vg8_A RAS-related protein RAB 99.7 6E-17 2E-21 173.7 16.0 160 180-354 6-175 (207)
218 3dz8_A RAS-related protein RAB 99.7 1.7E-17 5.9E-22 175.8 11.6 160 180-354 21-186 (191)
219 3bwd_D RAC-like GTP-binding pr 99.7 6.2E-18 2.1E-22 177.3 8.1 156 181-352 7-179 (182)
220 3cph_A RAS-related protein SEC 99.7 2.7E-17 9.3E-22 177.3 13.3 151 3-164 21-182 (213)
221 1ky3_A GTP-binding protein YPT 99.7 2.3E-17 7.9E-22 172.7 12.3 159 181-354 7-178 (182)
222 2gco_A H9, RHO-related GTP-bin 99.7 4.5E-17 1.6E-21 174.1 14.9 160 180-352 23-198 (201)
223 2bme_A RAB4A, RAS-related prot 99.7 7.8E-17 2.7E-21 169.6 16.4 151 3-164 11-173 (186)
224 3o47_A ADP-ribosylation factor 99.7 3.5E-17 1.2E-21 188.4 14.7 159 181-354 164-327 (329)
225 2oil_A CATX-8, RAS-related pro 99.7 4.9E-17 1.7E-21 172.5 14.7 159 180-354 23-188 (193)
226 2hxs_A RAB-26, RAS-related pro 99.7 2.2E-17 7.6E-22 172.4 11.9 152 3-165 7-174 (178)
227 2o52_A RAS-related protein RAB 99.7 6.6E-17 2.3E-21 172.7 15.8 158 180-353 23-187 (200)
228 2fv8_A H6, RHO-related GTP-bin 99.7 4.9E-17 1.7E-21 174.7 14.8 162 180-354 23-200 (207)
229 1zd9_A ADP-ribosylation factor 99.7 5.6E-17 1.9E-21 171.4 15.0 149 3-163 23-184 (188)
230 1ek0_A Protein (GTP-binding pr 99.7 7.5E-17 2.6E-21 166.6 15.6 150 3-163 4-168 (170)
231 1upt_A ARL1, ADP-ribosylation 99.7 3.1E-17 1.1E-21 169.9 12.8 147 3-163 8-168 (171)
232 2f7s_A C25KG, RAS-related prot 99.7 1.1E-16 3.8E-21 173.2 17.6 156 180-353 23-198 (217)
233 1r2q_A RAS-related protein RAB 99.7 1.1E-16 3.8E-21 165.3 16.8 151 3-164 7-169 (170)
234 2hup_A RAS-related protein RAB 99.7 7.6E-17 2.6E-21 172.4 16.0 152 3-164 30-193 (201)
235 3cbq_A GTP-binding protein REM 99.7 7.4E-17 2.5E-21 171.6 15.8 152 3-164 24-188 (195)
236 4dsu_A GTPase KRAS, isoform 2B 99.7 9.6E-17 3.3E-21 169.2 16.5 151 3-165 5-167 (189)
237 2y8e_A RAB-protein 6, GH09086P 99.7 4.5E-17 1.5E-21 170.0 13.8 150 3-163 15-176 (179)
238 1z0f_A RAB14, member RAS oncog 99.7 9.4E-17 3.2E-21 167.5 16.1 150 3-163 16-177 (179)
239 2fg5_A RAB-22B, RAS-related pr 99.7 4.5E-17 1.5E-21 172.7 13.8 153 3-165 24-187 (192)
240 3q85_A GTP-binding protein REM 99.7 9.9E-17 3.4E-21 165.9 16.1 150 3-162 3-165 (169)
241 3oes_A GTPase rhebl1; small GT 99.7 5.4E-17 1.8E-21 173.5 14.4 160 180-356 22-189 (201)
242 2yc2_C IFT27, small RAB-relate 99.7 2.7E-17 9.4E-22 176.4 12.1 160 180-354 18-192 (208)
243 1z08_A RAS-related protein RAB 99.7 5.8E-17 2E-21 167.7 14.1 150 3-163 7-168 (170)
244 1z0j_A RAB-22, RAS-related pro 99.7 5.8E-17 2E-21 167.6 14.1 150 3-163 7-168 (170)
245 3llu_A RAS-related GTP-binding 99.7 2.8E-17 9.6E-22 175.0 12.0 161 180-351 18-194 (196)
246 2fn4_A P23, RAS-related protei 99.7 8.7E-17 3E-21 168.1 15.5 150 3-164 10-172 (181)
247 3cpj_B GTP-binding protein YPT 99.7 1.1E-16 3.9E-21 174.0 17.0 161 180-356 11-178 (223)
248 4bas_A ADP-ribosylation factor 99.7 6.4E-17 2.2E-21 172.3 14.6 151 3-164 18-189 (199)
249 1z06_A RAS-related protein RAB 99.7 7.4E-17 2.5E-21 170.5 14.9 150 3-163 21-187 (189)
250 2gf0_A GTP-binding protein DI- 99.7 1.1E-16 3.7E-21 170.5 16.3 162 181-359 7-176 (199)
251 1u8z_A RAS-related protein RAL 99.7 1.6E-16 5.6E-21 163.6 17.1 148 3-162 5-165 (168)
252 2fu5_C RAS-related protein RAB 99.7 1.6E-17 5.6E-22 174.4 9.6 151 3-164 9-171 (183)
253 2cjw_A GTP-binding protein GEM 99.7 6.3E-17 2.2E-21 171.7 14.2 160 181-354 5-172 (192)
254 1kao_A RAP2A; GTP-binding prot 99.7 5.5E-17 1.9E-21 167.0 13.4 148 3-162 4-164 (167)
255 1zj6_A ADP-ribosylation factor 99.7 6.8E-17 2.3E-21 170.5 14.4 150 3-166 17-180 (187)
256 1kk1_A EIF2gamma; initiation o 99.7 2E-16 6.9E-21 188.1 19.9 162 180-352 8-198 (410)
257 3q3j_B RHO-related GTP-binding 99.7 4.8E-17 1.6E-21 175.8 13.3 161 180-356 25-205 (214)
258 1c1y_A RAS-related protein RAP 99.7 9.1E-17 3.1E-21 165.6 14.7 149 3-162 4-165 (167)
259 2g3y_A GTP-binding protein GEM 99.7 1.2E-16 4E-21 171.8 15.8 152 3-163 38-202 (211)
260 1f6b_A SAR1; gtpases, N-termin 99.7 3.5E-17 1.2E-21 174.6 11.6 147 3-162 26-197 (198)
261 3c5c_A RAS-like protein 12; GD 99.7 8.3E-17 2.8E-21 170.0 14.4 156 180-353 19-185 (187)
262 3lxw_A GTPase IMAP family memb 99.7 8.5E-17 2.9E-21 177.6 15.0 161 3-165 22-209 (247)
263 3bc1_A RAS-related protein RAB 99.7 1.2E-16 4.2E-21 169.1 15.7 151 3-164 12-185 (195)
264 2h57_A ADP-ribosylation factor 99.7 3.4E-17 1.2E-21 173.3 11.4 150 3-163 22-186 (190)
265 1ksh_A ARF-like protein 2; sma 99.7 8.3E-17 2.8E-21 169.6 14.2 149 3-164 19-180 (186)
266 2c78_A Elongation factor TU-A; 99.7 2.4E-17 8.2E-22 195.8 11.2 151 180-341 9-181 (405)
267 3qq5_A Small GTP-binding prote 99.7 9E-18 3.1E-22 197.8 7.4 158 3-165 35-197 (423)
268 1z2a_A RAS-related protein RAB 99.7 6.4E-17 2.2E-21 166.9 12.9 149 3-162 6-165 (168)
269 1g16_A RAS-related protein SEC 99.7 4.3E-17 1.5E-21 168.6 11.6 150 3-163 4-164 (170)
270 2bcg_Y Protein YP2, GTP-bindin 99.7 1.2E-16 4E-21 171.5 15.3 151 3-164 9-171 (206)
271 3p26_A Elongation factor 1 alp 99.7 5.8E-17 2E-21 196.6 14.4 155 181-346 32-230 (483)
272 3reg_A RHO-like small GTPase; 99.7 7.1E-17 2.4E-21 171.4 13.4 152 3-165 24-189 (194)
273 1zbd_A Rabphilin-3A; G protein 99.7 1.9E-16 6.6E-21 169.3 16.8 151 3-164 9-171 (203)
274 2h17_A ADP-ribosylation factor 99.7 4.4E-17 1.5E-21 171.0 11.5 144 3-160 22-179 (181)
275 1d2e_A Elongation factor TU (E 99.7 6.6E-17 2.2E-21 191.2 14.1 148 182-340 3-171 (397)
276 2o52_A RAS-related protein RAB 99.7 7E-17 2.4E-21 172.5 13.0 151 3-164 26-188 (200)
277 3sjy_A Translation initiation 99.7 8.6E-17 2.9E-21 190.7 15.1 163 180-353 6-191 (403)
278 2a9k_A RAS-related protein RAL 99.7 3E-16 1E-20 165.0 17.5 149 3-163 19-180 (187)
279 3clv_A RAB5 protein, putative; 99.7 1.2E-16 4.2E-21 170.6 14.8 150 3-163 8-203 (208)
280 1ky3_A GTP-binding protein YPT 99.7 1.3E-16 4.4E-21 167.0 14.6 151 3-163 9-177 (182)
281 1jwy_B Dynamin A GTPase domain 99.7 9.6E-17 3.3E-21 184.4 14.8 191 181-373 23-287 (315)
282 2b6h_A ADP-ribosylation factor 99.7 1.2E-16 4.3E-21 169.4 14.5 148 3-163 30-190 (192)
283 3kkq_A RAS-related protein M-R 99.7 1.4E-16 4.8E-21 167.3 14.7 148 3-162 19-180 (183)
284 2bov_A RAla, RAS-related prote 99.7 2.8E-16 9.6E-21 168.2 17.3 150 3-164 15-177 (206)
285 2f7s_A C25KG, RAS-related prot 99.7 1.7E-16 5.9E-21 171.7 15.8 149 3-164 26-199 (217)
286 2qtf_A Protein HFLX, GTP-bindi 99.7 2.3E-16 7.8E-21 183.2 17.8 170 182-356 178-356 (364)
287 1m2o_B GTP-binding protein SAR 99.7 8.2E-17 2.8E-21 170.5 12.9 146 3-161 24-189 (190)
288 2a5j_A RAS-related protein RAB 99.7 6.7E-17 2.3E-21 171.2 12.1 150 3-163 22-183 (191)
289 3gj0_A GTP-binding nuclear pro 99.7 3.1E-17 1E-21 178.2 9.6 158 180-353 13-174 (221)
290 2atv_A RERG, RAS-like estrogen 99.7 3.8E-16 1.3E-20 166.1 17.7 156 181-354 27-191 (196)
291 4gzl_A RAS-related C3 botulinu 99.7 4.2E-17 1.5E-21 174.8 10.2 149 3-162 31-203 (204)
292 1s0u_A EIF-2-gamma, translatio 99.7 3E-16 1E-20 186.3 18.6 161 181-352 7-196 (408)
293 1lnz_A SPO0B-associated GTP-bi 99.7 3.7E-17 1.3E-21 187.8 10.1 163 184-356 160-332 (342)
294 2oil_A CATX-8, RAS-related pro 99.7 2.2E-16 7.5E-21 167.4 15.2 150 3-163 26-187 (193)
295 2gf9_A RAS-related protein RAB 99.7 1.1E-16 3.6E-21 169.3 12.6 150 3-163 23-184 (189)
296 1vg8_A RAS-related protein RAB 99.7 1.5E-16 5.3E-21 170.5 13.9 153 3-165 9-176 (207)
297 3dz8_A RAS-related protein RAB 99.7 5.4E-17 1.8E-21 172.0 10.1 151 2-163 23-185 (191)
298 2ce2_X GTPase HRAS; signaling 99.7 3.9E-16 1.3E-20 160.3 16.2 149 3-163 4-164 (166)
299 1zun_B Sulfate adenylate trans 99.7 1.6E-16 5.6E-21 190.1 15.4 156 181-347 23-217 (434)
300 2erx_A GTP-binding protein DI- 99.7 3.7E-16 1.3E-20 161.8 16.0 149 3-163 4-166 (172)
301 2p5s_A RAS and EF-hand domain 99.7 2.2E-16 7.5E-21 168.4 14.7 150 3-163 29-196 (199)
302 2cxx_A Probable GTP-binding pr 99.7 4.2E-16 1.4E-20 164.5 16.6 158 2-164 1-184 (190)
303 2atx_A Small GTP binding prote 99.7 1.3E-16 4.5E-21 169.3 12.7 150 3-163 19-192 (194)
304 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.3E-16 4.6E-21 167.6 12.5 152 3-165 6-181 (186)
305 3cpj_B GTP-binding protein YPT 99.7 8.2E-17 2.8E-21 175.1 11.0 152 3-165 14-177 (223)
306 2zej_A Dardarin, leucine-rich 99.7 2E-16 6.9E-21 166.5 13.6 162 182-354 2-178 (184)
307 1lnz_A SPO0B-associated GTP-bi 99.7 5.3E-17 1.8E-21 186.5 9.9 162 2-166 158-332 (342)
308 3j2k_7 ERF3, eukaryotic polype 99.7 3.9E-16 1.3E-20 186.5 17.6 145 3-156 18-217 (439)
309 3izq_1 HBS1P, elongation facto 99.7 4.7E-17 1.6E-21 201.3 10.0 155 180-345 165-363 (611)
310 1m7b_A RND3/RHOE small GTP-bin 99.7 6.5E-17 2.2E-21 170.2 9.6 160 180-352 5-181 (184)
311 3con_A GTPase NRAS; structural 99.7 5.6E-16 1.9E-20 163.8 16.7 149 3-163 22-182 (190)
312 2x2e_A Dynamin-1; nitration, h 99.7 9.3E-17 3.2E-21 187.1 11.3 213 149-374 7-287 (353)
313 3t1o_A Gliding protein MGLA; G 99.7 9.4E-17 3.2E-21 170.5 10.3 153 3-164 15-192 (198)
314 3mca_A HBS1, elongation factor 99.7 1E-17 3.6E-22 206.6 3.2 153 180-343 175-372 (592)
315 2ywe_A GTP-binding protein LEP 99.7 2.6E-16 8.7E-21 192.5 15.3 160 181-353 5-183 (600)
316 3cb4_D GTP-binding protein LEP 99.7 2.8E-16 9.6E-21 192.6 15.7 160 182-354 4-182 (599)
317 2q3h_A RAS homolog gene family 99.7 2.1E-16 7E-21 168.8 12.8 150 3-163 21-194 (201)
318 2aka_B Dynamin-1; fusion prote 99.7 2.4E-16 8.1E-21 179.7 14.0 159 2-160 26-249 (299)
319 2iwr_A Centaurin gamma 1; ANK 99.7 5.8E-16 2E-20 161.7 15.8 145 3-164 8-169 (178)
320 1pui_A ENGB, probable GTP-bind 99.7 7.8E-16 2.7E-20 165.5 17.2 171 181-354 25-199 (210)
321 2cjw_A GTP-binding protein GEM 99.7 2.3E-16 7.7E-21 167.4 12.5 152 3-163 7-171 (192)
322 3izy_P Translation initiation 99.7 8E-18 2.7E-22 203.1 1.4 160 181-353 3-167 (537)
323 3gj0_A GTP-binding nuclear pro 99.7 5.5E-17 1.9E-21 176.2 7.9 154 3-166 16-177 (221)
324 2j1l_A RHO-related GTP-binding 99.7 4.5E-16 1.6E-20 168.1 15.0 150 3-163 35-208 (214)
325 3l0i_B RAS-related protein RAB 99.7 1.1E-17 3.9E-22 178.5 2.2 158 180-353 31-195 (199)
326 3ihw_A Centg3; RAS, centaurin, 99.7 9.7E-16 3.3E-20 161.3 16.9 144 3-163 21-179 (184)
327 2x77_A ADP-ribosylation factor 99.7 9.6E-17 3.3E-21 169.6 8.8 147 3-163 23-183 (189)
328 3th5_A RAS-related C3 botulinu 99.5 7.4E-18 2.5E-22 180.6 0.0 159 180-351 28-202 (204)
329 3oes_A GTPase rhebl1; small GT 99.7 2E-16 6.8E-21 169.1 11.1 151 3-165 25-188 (201)
330 2yc2_C IFT27, small RAB-relate 99.7 1.2E-16 4.2E-21 171.3 9.3 152 3-164 21-192 (208)
331 2fh5_B SR-beta, signal recogni 99.7 7.9E-16 2.7E-20 166.1 15.8 146 2-161 7-213 (214)
332 3o47_A ADP-ribosylation factor 99.7 2.7E-16 9.4E-21 180.9 12.8 148 4-164 167-327 (329)
333 1gwn_A RHO-related GTP-binding 99.7 1.4E-16 4.9E-21 170.8 9.8 160 180-352 26-202 (205)
334 3cb4_D GTP-binding protein LEP 99.7 1.9E-16 6.4E-21 194.2 11.8 184 3-205 5-216 (599)
335 1moz_A ARL1, ADP-ribosylation 99.7 1.8E-16 6.1E-21 166.4 10.0 148 3-163 19-179 (183)
336 2gco_A H9, RHO-related GTP-bin 99.7 4.3E-16 1.5E-20 166.5 13.0 149 3-162 26-198 (201)
337 3q3j_B RHO-related GTP-binding 99.6 3.1E-16 1E-20 169.4 12.0 152 3-165 28-204 (214)
338 2fv8_A H6, RHO-related GTP-bin 99.6 3.2E-16 1.1E-20 168.4 12.0 151 3-164 26-200 (207)
339 3bwd_D RAC-like GTP-binding pr 99.6 6.9E-17 2.4E-21 169.3 6.6 150 3-163 9-180 (182)
340 2qtf_A Protein HFLX, GTP-bindi 99.6 7.3E-16 2.5E-20 178.9 15.8 160 3-164 180-354 (364)
341 1jny_A EF-1-alpha, elongation 99.6 2.5E-16 8.4E-21 188.5 12.2 155 181-346 5-205 (435)
342 3cnl_A YLQF, putative uncharac 99.6 5.2E-17 1.8E-21 180.1 5.8 143 73-244 12-158 (262)
343 4djt_A GTP-binding nuclear pro 99.6 1.6E-16 5.4E-21 172.1 9.4 154 3-166 12-177 (218)
344 3t5d_A Septin-7; GTP-binding p 99.6 4.9E-16 1.7E-20 174.5 13.6 159 3-163 9-203 (274)
345 2e87_A Hypothetical protein PH 99.6 1.2E-15 4.2E-20 177.9 17.4 160 3-164 168-336 (357)
346 2gf0_A GTP-binding protein DI- 99.6 1.3E-15 4.3E-20 162.2 16.0 151 3-165 9-172 (199)
347 3c5c_A RAS-like protein 12; GD 99.6 5.5E-16 1.9E-20 163.6 12.9 147 3-162 22-184 (187)
348 2atv_A RERG, RAS-like estrogen 99.6 1.1E-15 3.9E-20 162.4 15.5 148 3-163 29-190 (196)
349 3r7w_A Gtpase1, GTP-binding pr 99.6 1E-15 3.4E-20 174.7 15.9 158 3-165 4-182 (307)
350 3zvr_A Dynamin-1; hydrolase, D 99.6 5.4E-16 1.8E-20 192.5 14.5 226 140-374 15-307 (772)
351 2j0v_A RAC-like GTP-binding pr 99.6 2E-16 6.8E-21 170.5 9.2 153 3-166 10-182 (212)
352 3izy_P Translation initiation 99.6 1.4E-17 4.8E-22 200.9 0.2 188 2-199 4-211 (537)
353 3avx_A Elongation factor TS, e 99.6 5.3E-16 1.8E-20 196.6 14.2 149 180-339 294-463 (1289)
354 3tr5_A RF-3, peptide chain rel 99.6 6.2E-16 2.1E-20 187.8 14.3 117 2-127 13-150 (528)
355 1wb1_A Translation elongation 99.6 5.8E-16 2E-20 187.0 13.9 152 3-163 20-188 (482)
356 3llu_A RAS-related GTP-binding 99.6 5E-16 1.7E-20 165.3 11.6 149 2-162 20-195 (196)
357 2wkq_A NPH1-1, RAS-related C3 99.6 7.2E-16 2.5E-20 178.3 13.8 160 181-353 154-329 (332)
358 3l0i_B RAS-related protein RAB 99.6 2.2E-17 7.5E-22 176.2 0.9 150 3-163 34-195 (199)
359 3bh7_B Protein XRP2; protein-p 99.6 9.9E-17 3.4E-21 180.6 6.1 106 423-550 236-343 (352)
360 3lxx_A GTPase IMAP family memb 99.6 2.2E-15 7.4E-20 165.8 16.5 159 3-164 30-214 (239)
361 1wxq_A GTP-binding protein; st 99.6 9E-17 3.1E-21 188.6 4.6 154 183-346 1-262 (397)
362 3lvq_E ARF-GAP with SH3 domain 99.6 1.2E-15 4.1E-20 186.6 14.7 150 3-165 323-485 (497)
363 2h5e_A Peptide chain release f 99.6 2.8E-15 9.6E-20 182.3 17.5 129 181-321 12-161 (529)
364 1g7s_A Translation initiation 99.6 1.5E-15 5.1E-20 186.5 14.2 160 181-353 4-217 (594)
365 2qm8_A GTPase/ATPase; G protei 99.6 1.1E-16 3.9E-21 184.2 4.0 203 181-401 54-319 (337)
366 1zo1_I IF2, translation initia 99.6 6.4E-17 2.2E-21 193.6 1.6 156 181-349 3-162 (501)
367 1jwy_B Dynamin A GTPase domain 99.6 2.5E-15 8.5E-20 172.6 14.6 165 2-166 24-264 (315)
368 1m7b_A RND3/RHOE small GTP-bin 99.6 1.5E-15 5.3E-20 159.6 11.5 149 3-162 8-181 (184)
369 2j69_A Bacterial dynamin-like 99.6 3.1E-15 1E-19 188.3 15.9 168 181-356 68-327 (695)
370 1r5b_A Eukaryotic peptide chai 99.6 4.6E-16 1.6E-20 187.4 7.8 156 180-346 41-244 (467)
371 2xex_A Elongation factor G; GT 99.6 6.4E-15 2.2E-19 185.3 17.3 130 181-322 9-155 (693)
372 1wxq_A GTP-binding protein; st 99.6 2.5E-16 8.6E-21 184.8 4.2 160 4-166 2-273 (397)
373 1gwn_A RHO-related GTP-binding 99.6 2.3E-15 7.8E-20 161.4 11.2 149 3-162 29-202 (205)
374 3vqt_A RF-3, peptide chain rel 99.6 6.7E-15 2.3E-19 179.8 16.6 130 181-322 30-180 (548)
375 3sjy_A Translation initiation 99.6 3.7E-15 1.3E-19 176.7 13.5 154 3-165 9-193 (403)
376 4a9a_A Ribosome-interacting GT 99.6 6E-15 2.1E-19 170.2 14.8 117 3-123 73-194 (376)
377 3th5_A RAS-related C3 botulinu 99.4 1.1E-16 3.7E-21 171.6 0.0 148 3-161 31-202 (204)
378 2ywe_A GTP-binding protein LEP 99.6 4E-15 1.4E-19 181.9 13.7 155 3-166 7-186 (600)
379 2a5h_A L-lysine 2,3-aminomutas 99.6 4.3E-14 1.5E-18 167.0 21.7 201 604-844 105-317 (416)
380 2c78_A Elongation factor TU-A; 99.6 3.9E-15 1.3E-19 176.7 12.3 154 3-165 12-213 (405)
381 1kk1_A EIF2gamma; initiation o 99.6 1.3E-14 4.6E-19 172.4 17.0 154 3-165 11-201 (410)
382 1s0u_A EIF-2-gamma, translatio 99.6 2.5E-14 8.6E-19 169.8 19.1 154 3-165 9-199 (408)
383 1dar_A EF-G, elongation factor 99.6 1.1E-14 3.6E-19 183.2 16.6 129 181-321 11-156 (691)
384 2zej_A Dardarin, leucine-rich 99.6 3E-15 1E-19 157.4 9.7 153 2-164 2-178 (184)
385 2elf_A Protein translation elo 99.6 2.4E-15 8.1E-20 175.2 9.5 142 3-164 22-180 (370)
386 2wkq_A NPH1-1, RAS-related C3 99.6 4.5E-15 1.5E-19 171.6 11.6 150 3-163 156-329 (332)
387 4a9a_A Ribosome-interacting GT 99.6 2E-14 7E-19 165.8 16.7 119 181-306 71-195 (376)
388 3iix_A Biotin synthetase, puta 99.6 4.9E-14 1.7E-18 164.1 19.9 191 620-843 57-257 (348)
389 1h65_A Chloroplast outer envel 99.6 3E-14 1E-18 159.6 17.1 127 181-309 38-170 (270)
390 1zun_B Sulfate adenylate trans 99.6 1.4E-14 4.8E-19 173.3 15.3 143 3-154 25-214 (434)
391 1d2e_A Elongation factor TU (E 99.6 1E-14 3.5E-19 172.4 13.7 154 3-165 4-196 (397)
392 1zo1_I IF2, translation initia 99.6 2.6E-16 8.8E-21 188.4 -0.1 149 2-160 4-163 (501)
393 3p26_A Elongation factor 1 alp 99.6 8.4E-15 2.9E-19 177.6 13.1 142 3-153 34-227 (483)
394 3izq_1 HBS1P, elongation facto 99.6 3.7E-15 1.3E-19 184.3 9.8 143 3-154 168-362 (611)
395 2rdo_7 EF-G, elongation factor 99.6 3.7E-14 1.3E-18 178.5 18.8 117 181-308 9-149 (704)
396 2x2e_A Dynamin-1; nitration, h 99.6 5.7E-15 2E-19 171.9 10.6 159 2-160 31-254 (353)
397 3def_A T7I23.11 protein; chlor 99.5 2.8E-14 9.5E-19 159.0 15.2 125 181-307 35-165 (262)
398 3mca_A HBS1, elongation factor 99.5 4.3E-16 1.5E-20 192.2 0.1 152 3-163 178-396 (592)
399 3t7v_A Methylornithine synthas 99.5 5.6E-15 1.9E-19 172.0 8.8 228 558-828 2-248 (350)
400 3dpu_A RAB family protein; roc 99.5 1.3E-14 4.3E-19 178.7 12.5 159 180-356 39-210 (535)
401 3zvr_A Dynamin-1; hydrolase, D 99.5 3.4E-14 1.2E-18 176.5 15.5 159 2-160 51-274 (772)
402 2dy1_A Elongation factor G; tr 99.5 6.8E-14 2.3E-18 175.4 18.4 129 181-322 8-153 (665)
403 3c5h_A Glucocorticoid receptor 99.5 7.3E-15 2.5E-19 163.0 8.4 167 180-352 17-253 (255)
404 2f9l_A RAB11B, member RAS onco 99.5 7.2E-14 2.5E-18 148.9 15.2 158 181-354 4-168 (199)
405 2www_A Methylmalonic aciduria 99.5 9.7E-15 3.3E-19 169.1 9.0 155 182-354 74-279 (349)
406 1g7s_A Translation initiation 99.5 6.1E-15 2.1E-19 181.2 7.5 151 2-163 5-217 (594)
407 2f9l_A RAB11B, member RAS onco 99.5 6.1E-14 2.1E-18 149.4 13.8 151 3-164 6-168 (199)
408 1f60_A Elongation factor EEF1A 99.5 1.7E-14 5.9E-19 173.2 10.7 142 3-153 8-201 (458)
409 1oix_A RAS-related protein RAB 99.5 1.5E-13 5.2E-18 145.4 16.2 155 181-351 28-189 (191)
410 3avx_A Elongation factor TS, e 99.5 6.1E-14 2.1E-18 178.0 14.3 154 3-165 297-487 (1289)
411 2h5e_A Peptide chain release f 99.5 1E-13 3.5E-18 168.5 15.5 115 3-126 14-149 (529)
412 3r7w_B Gtpase2, GTP-binding pr 99.5 4.5E-14 1.5E-18 158.7 11.2 158 184-352 1-172 (331)
413 3def_A T7I23.11 protein; chlor 99.5 1.2E-13 4.1E-18 153.9 14.1 122 3-126 37-166 (262)
414 2j69_A Bacterial dynamin-like 99.5 5.1E-14 1.7E-18 177.2 12.2 155 3-163 70-324 (695)
415 1pui_A ENGB, probable GTP-bind 99.5 1.4E-13 4.7E-18 147.9 13.9 160 3-165 27-200 (210)
416 1h65_A Chloroplast outer envel 99.5 1.2E-13 4.2E-18 154.6 13.6 123 3-127 40-170 (270)
417 2qag_A Septin-2, protein NEDD5 99.5 1.3E-13 4.6E-18 160.3 14.3 167 181-351 36-230 (361)
418 3p32_A Probable GTPase RV1496/ 99.5 8.5E-15 2.9E-19 170.4 4.2 156 181-354 78-284 (355)
419 1jny_A EF-1-alpha, elongation 99.5 3.7E-14 1.3E-18 169.6 9.7 142 3-153 7-202 (435)
420 3j25_A Tetracycline resistance 99.5 1.5E-14 5.1E-19 180.5 6.3 160 183-354 3-239 (638)
421 1u0l_A Probable GTPase ENGC; p 99.5 2.7E-14 9.3E-19 162.1 7.8 189 17-244 32-235 (301)
422 3dpu_A RAB family protein; roc 99.5 3.1E-14 1.1E-18 175.3 8.7 150 3-165 42-209 (535)
423 1oix_A RAS-related protein RAB 99.5 1.7E-13 5.8E-18 145.0 13.1 149 3-162 30-190 (191)
424 1tv8_A MOAA, molybdenum cofact 99.5 1.1E-12 3.8E-17 152.0 21.0 179 616-825 14-202 (340)
425 1nrj_B SR-beta, signal recogni 99.5 4.6E-14 1.6E-18 152.7 8.7 146 181-340 11-170 (218)
426 1dar_A EF-G, elongation factor 99.5 2.5E-13 8.4E-18 170.8 16.6 115 3-126 13-144 (691)
427 2xex_A Elongation factor G; GT 99.5 1.3E-13 4.4E-18 173.5 13.5 115 3-126 11-142 (693)
428 1udx_A The GTP-binding protein 99.5 4.8E-13 1.6E-17 157.1 16.3 163 183-356 158-327 (416)
429 1r5b_A Eukaryotic peptide chai 99.5 6.7E-14 2.3E-18 168.5 8.9 144 3-155 44-243 (467)
430 3r7w_B Gtpase2, GTP-binding pr 99.4 8.1E-14 2.8E-18 156.7 8.6 154 4-165 1-175 (331)
431 2ged_A SR-beta, signal recogni 99.4 3.1E-13 1E-17 143.0 12.6 154 146-322 21-185 (193)
432 1n0u_A EF-2, elongation factor 99.4 2E-13 6.8E-18 175.2 12.7 151 181-342 18-221 (842)
433 2p67_A LAO/AO transport system 99.4 1.1E-13 3.8E-18 160.0 8.9 155 181-353 55-260 (341)
434 1jal_A YCHF protein; nucleotid 99.4 1.6E-13 5.6E-18 157.3 10.2 89 183-276 3-108 (363)
435 2rdo_7 EF-G, elongation factor 99.4 1.1E-12 3.8E-17 165.1 18.1 116 2-126 10-149 (704)
436 1jal_A YCHF protein; nucleotid 99.4 3.5E-13 1.2E-17 154.6 12.2 91 1-94 1-108 (363)
437 1nrj_B SR-beta, signal recogni 99.4 1.1E-13 3.6E-18 149.8 7.3 136 2-150 12-170 (218)
438 4fn5_A EF-G 1, elongation fact 99.4 2E-12 6.7E-17 163.7 19.3 128 182-321 13-164 (709)
439 3t34_A Dynamin-related protein 99.4 5.7E-13 1.9E-17 155.6 13.1 161 183-347 35-254 (360)
440 2dy1_A Elongation factor G; tr 99.4 1E-12 3.4E-17 164.8 15.8 113 3-124 10-139 (665)
441 3c5h_A Glucocorticoid receptor 99.4 6E-14 2.1E-18 155.6 3.8 81 82-162 162-253 (255)
442 1udx_A The GTP-binding protein 99.4 6.1E-13 2.1E-17 156.2 11.5 158 3-165 158-326 (416)
443 3t34_A Dynamin-related protein 99.4 1.1E-12 3.7E-17 153.3 12.7 155 2-158 34-255 (360)
444 2dby_A GTP-binding protein; GD 99.4 9.6E-13 3.3E-17 152.1 11.5 183 183-373 2-280 (368)
445 2wsm_A Hydrogenase expression/ 99.4 3.2E-13 1.1E-17 146.4 6.4 153 182-355 30-215 (221)
446 2qpt_A EH domain-containing pr 99.4 1.1E-12 3.9E-17 160.3 11.2 135 181-318 64-243 (550)
447 3vqt_A RF-3, peptide chain rel 99.4 2.8E-12 9.6E-17 156.6 14.5 115 3-126 32-167 (548)
448 1yrb_A ATP(GTP)binding protein 99.4 1.5E-12 5.2E-17 145.0 10.8 168 181-354 13-257 (262)
449 2qpt_A EH domain-containing pr 99.4 4.4E-13 1.5E-17 164.0 6.9 128 2-129 65-236 (550)
450 2qnr_A Septin-2, protein NEDD5 99.3 4.6E-12 1.6E-16 143.6 14.1 167 182-352 18-212 (301)
451 2qag_A Septin-2, protein NEDD5 99.3 1.6E-12 5.3E-17 151.3 10.3 157 3-162 38-231 (361)
452 2yv5_A YJEQ protein; hydrolase 99.3 3.1E-12 1.1E-16 145.0 11.8 139 78-243 75-229 (302)
453 2ged_A SR-beta, signal recogni 99.3 2.1E-12 7.2E-17 136.5 9.5 113 3-128 49-173 (193)
454 2qag_C Septin-7; cell cycle, c 99.3 4.7E-12 1.6E-16 148.7 12.8 168 182-351 31-224 (418)
455 1v95_A Nuclear receptor coacti 99.3 7.9E-12 2.7E-16 119.2 11.2 100 1138-1245 5-106 (130)
456 2www_A Methylmalonic aciduria 99.3 8.6E-13 2.9E-17 152.7 5.5 144 3-162 75-277 (349)
457 1t9h_A YLOQ, probable GTPase E 99.3 2E-12 6.7E-17 145.4 6.3 138 79-244 83-238 (307)
458 2dby_A GTP-binding protein; GD 99.3 6.7E-12 2.3E-16 145.1 10.7 89 3-94 2-111 (368)
459 3p32_A Probable GTPase RV1496/ 99.3 1.6E-12 5.4E-17 151.3 4.4 146 3-164 80-284 (355)
460 2dq3_A Seryl-tRNA synthetase; 99.2 1.4E-11 4.8E-16 144.9 11.4 132 837-977 181-323 (425)
461 1r30_A Biotin synthase; SAM ra 99.2 2.8E-10 9.6E-15 133.1 21.2 190 620-844 69-275 (369)
462 3j25_A Tetracycline resistance 99.2 4.6E-12 1.6E-16 158.0 6.3 157 2-167 2-242 (638)
463 2p67_A LAO/AO transport system 99.2 7.5E-12 2.6E-16 144.6 7.3 144 3-162 57-259 (341)
464 3dsq_A Pyrrolysyl-tRNA synthet 99.2 4.5E-11 1.5E-15 133.3 12.8 139 830-975 72-210 (288)
465 2qgq_A Protein TM_1862; alpha- 99.2 3.3E-10 1.1E-14 128.6 19.3 184 614-827 2-201 (304)
466 1yrb_A ATP(GTP)binding protein 99.2 1E-11 3.4E-16 138.3 5.7 159 3-165 15-258 (262)
467 2qag_C Septin-7; cell cycle, c 99.2 8.5E-11 2.9E-15 138.1 13.1 158 3-162 32-225 (418)
468 2dq0_A Seryl-tRNA synthetase; 99.1 1.6E-10 5.3E-15 136.6 12.9 135 836-979 201-345 (455)
469 1n0u_A EF-2, elongation factor 99.1 4.1E-11 1.4E-15 153.8 8.0 113 3-124 20-163 (842)
470 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 8.7E-11 3E-15 136.5 9.9 92 181-276 19-127 (392)
471 2qnr_A Septin-2, protein NEDD5 99.1 1.5E-10 5.2E-15 131.1 11.0 158 3-163 19-213 (301)
472 2ohf_A Protein OLA1, GTP-bindi 99.1 4E-11 1.4E-15 138.7 5.8 157 181-355 21-196 (396)
473 2ohf_A Protein OLA1, GTP-bindi 99.1 2.8E-11 9.5E-16 140.1 4.3 148 3-163 23-194 (396)
474 4fn5_A EF-G 1, elongation fact 99.1 3.3E-10 1.1E-14 143.3 14.4 114 3-125 14-151 (709)
475 2hf9_A Probable hydrogenase ni 99.1 1.3E-10 4.6E-15 126.1 8.8 153 181-354 37-224 (226)
476 1ses_A Seryl-tRNA synthetase; 99.1 1.9E-10 6.6E-15 134.8 10.6 129 837-974 175-315 (421)
477 2rcn_A Probable GTPase ENGC; Y 99.1 2E-10 7E-15 131.4 9.7 136 79-242 127-280 (358)
478 2qag_B Septin-6, protein NEDD5 99.1 1.2E-10 4.1E-15 135.9 7.7 152 182-335 42-217 (427)
479 3ec1_A YQEH GTPase; atnos1, at 99.1 5.2E-12 1.8E-16 147.2 -4.3 144 3-151 163-318 (369)
480 2wsm_A Hydrogenase expression/ 99.1 4.6E-11 1.6E-15 129.2 3.5 147 2-164 30-214 (221)
481 2qm8_A GTPase/ATPase; G protei 99.0 9.8E-11 3.3E-15 134.7 4.2 145 3-163 56-260 (337)
482 2j37_W Signal recognition part 99.0 4.5E-10 1.5E-14 134.6 9.7 182 181-373 100-338 (504)
483 3h2y_A GTPase family protein; 99.0 1.3E-11 4.4E-16 143.7 -4.3 142 3-148 161-314 (368)
484 1cip_A Protein (guanine nucleo 99.0 7.6E-10 2.6E-14 127.4 10.3 125 219-354 182-344 (353)
485 3ohm_A Guanine nucleotide-bind 98.9 5.4E-09 1.9E-13 118.4 14.0 128 217-355 154-319 (327)
486 3sop_A Neuronal-specific septi 98.9 5.1E-09 1.7E-13 116.3 13.4 142 182-324 2-171 (270)
487 3qtc_A Pyrrolysyl-tRNA synthet 98.9 7.6E-09 2.6E-13 116.2 14.8 136 830-975 78-213 (290)
488 1nnh_A Asparaginyl-tRNA synthe 98.9 5.3E-09 1.8E-13 117.1 13.0 117 834-968 21-141 (294)
489 2cja_A Seryl-tRNA synthetase; 98.9 9.9E-10 3.4E-14 130.8 7.4 127 842-976 246-411 (522)
490 4fid_A G protein alpha subunit 98.9 6.4E-09 2.2E-13 118.2 12.2 127 217-354 148-328 (340)
491 3vbb_A Seryl-tRNA synthetase, 98.9 5.5E-09 1.9E-13 123.4 12.0 148 825-977 193-364 (522)
492 1tq4_A IIGP1, interferon-induc 98.9 1.7E-08 6E-13 118.0 15.7 166 181-356 68-255 (413)
493 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 2.5E-09 8.5E-14 124.2 7.8 90 3-94 21-127 (392)
494 1f5n_A Interferon-induced guan 98.8 2.5E-09 8.7E-14 130.0 7.0 105 181-294 37-150 (592)
495 2qag_B Septin-6, protein NEDD5 98.8 7E-09 2.4E-13 121.0 10.2 126 3-129 43-194 (427)
496 2j37_W Signal recognition part 98.8 8.4E-09 2.9E-13 123.6 10.8 152 4-161 103-310 (504)
497 1wle_A Seryl-tRNA synthetase; 98.8 1.1E-08 3.9E-13 121.3 11.8 143 827-975 213-372 (501)
498 3lss_A Seryl-tRNA synthetase; 98.8 1.8E-08 6E-13 118.5 12.3 133 837-976 217-361 (484)
499 2hf9_A Probable hydrogenase ni 98.7 1.5E-09 5E-14 117.8 0.9 52 111-162 164-222 (226)
500 1olt_A Oxygen-independent copr 98.7 2.6E-07 8.9E-12 110.8 18.8 203 625-853 61-287 (457)
No 1
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=100.00 E-value=5.2e-83 Score=739.27 Aligned_cols=357 Identities=46% Similarity=0.798 Sum_probs=310.0
Q ss_pred hhCCCCcccc-ccCCccchhhcchhhhhhhhcCChhHHHHHHHHHHHhcCCCCchhhcccCHHHHHHHhhcCccCCCeee
Q psy17091 506 LIGDTDPIKA-AKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIM 584 (1250)
Q Consensus 506 l~G~~~~~~a-~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~ 584 (1250)
++-|.+.... .+..|.+ +..+.+++++.+.|+|+|||+|||+|||++++.+|++||||||++|++|++.|.+..++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~-~~~~~l~~~~~~~g~~~fra~qi~~w~~~~~~~~~~~mt~l~k~~r~~l~~~~~~~~~~~~ 83 (404)
T 3rfa_A 5 LVTPENVTTKDGKINLLD-LNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVV 83 (404)
T ss_dssp ------------CEEGGG-CCHHHHHHHHHHTTCCHHHHHHHHHHHHHSCCCCGGGCTTSCHHHHHHHHHHEECCCCEEE
T ss_pred ccCcccCcCccCCCCccc-CCHHHHHHHHHHcCCcchHHHHHHHHHHhcCCCChHHhcccCHHHHHHHHhcCCCCCCceE
Confidence 4444443222 3444543 3345788999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCceEEEEEeCCCeEEEEEeccCCCceeeeecccCCcccccccccCCCCcccCCChhhhHHHHHHHHHHhhhhh
Q psy17091 585 SDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREK 664 (1250)
Q Consensus 585 ~~~~~~d~t~k~l~~~~~~~ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~~~~r~l~~~ei~~q~~~~~~~~~~~~ 664 (1250)
..+.|.|||+||||+|+|+.||||+||+++|.|+|||||+||+|+|.||+||.+++.||||++||++|++.+..+++..
T Consensus 84 ~~~~s~dgt~K~l~~ldg~~iEtV~i~~~~r~tlcVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~- 162 (404)
T 3rfa_A 84 EEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAA- 162 (404)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEEEEECSSCEEEECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCH-
T ss_pred EEEECCCCCEEEEEEcCCceEEEEEEecCCCceEEEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998877410
Q ss_pred hccccCCCCCCcceeeecccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchhHHHHhhhhCCCeEEEEccCCC
Q psy17091 665 NIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASN 744 (1250)
Q Consensus 665 ~~~~~~~~~~~~~~ivfmg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~~i~~~~~~~~~~la~sl~~~~ 744 (1250)
+ .+|+..++|||||||||||+||++|.++++.++++.|++||.|+|||||||++|.+++|+++.++.||+||||+|
T Consensus 163 g----~~gg~~i~~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~~d~~LaiSLka~d 238 (404)
T 3rfa_A 163 K----VTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPN 238 (404)
T ss_dssp H----HHSSCSCSEEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHHCCCEEEEECCCSS
T ss_pred c----cccCCCccEEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHhhcceEEecccCCC
Confidence 0 013467999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCCCHHHHHHHHHHHHhhCCC--ceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCC
Q psy17091 745 NNLRNKLVPISKKYPLKELILACHRYITYSPR--HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCF 822 (1250)
Q Consensus 745 ~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~~~--~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~ 822 (1250)
++.|++|||++++|+++++++++++|...+++ ++|+|||+||||+||+++++++|++|+++ ++++||||||||+
T Consensus 239 ~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~----l~~~VnLIpynP~ 314 (404)
T 3rfa_A 239 DEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINLIPWNPF 314 (404)
T ss_dssp HHHHHHHSGGGGTSCHHHHHHHHHHHHHHCTTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTT----SCEEEEEEECCCC
T ss_pred HHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCCcccEEEEEEEecCCCCCHHHHHHHHHHHHc----CCCcEEEEeccCC
Confidence 99999999999999999999999999877642 28999999999999999999999999999 8899999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCcccc
Q psy17091 823 PNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETD 872 (1250)
Q Consensus 823 ~~~~~~~p~~e~i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~ 872 (1250)
++.+|++|+.+++++|+++|+++|+.++||.++|.||+||||||+.+..+
T Consensus 315 ~~~~~~~ps~e~i~~f~~iL~~~Gi~vtiR~~~G~di~aaCGQL~~~~~~ 364 (404)
T 3rfa_A 315 PGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVID 364 (404)
T ss_dssp TTCCCCBCCHHHHHHHHHHHHHTTCEEEECCCCCC---------------
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEcCCCCcccccccccchhhhhh
Confidence 99999999999999999999999999999999999999999999877644
No 2
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=5.1e-68 Score=638.00 Aligned_cols=429 Identities=34% Similarity=0.610 Sum_probs=359.2
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 1 m~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
++|+|++||+||||||||+|+|++.+.+++++.||+|+|+..+.+.|++..+.+|||||+.... +.+.+++..++..++
T Consensus 2 ~~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 2 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD-EPFLAQIRQQAEIAM 80 (436)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc-hhHHHHHHHHHHHHH
Confidence 1589999999999999999999999888899999999999999999999999999999987443 236678889999999
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-hhHHhcCCCCcEecccccCCchhHHHHHHH
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENIL 159 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~ 159 (1250)
+++|++|||+|++.+.+..+..+.+++++.++|+++|+||+|+...... .+++.+++++++++||++|.|+++|++.+.
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~ 160 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVA 160 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHH
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHH
Confidence 9999999999999999999988999999899999999999998765433 667788888899999999999999999999
Q ss_pred HhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCC
Q psy17091 160 TIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239 (1250)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG 239 (1250)
+.+++.... . .....++|+++|+||||||||+|+|++.++..+++.+|||++.....+.+++..+.+|||||
T Consensus 161 ~~l~~~~~~-----~---~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G 232 (436)
T 2hjg_A 161 EHFKNIPET-----K---YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAG 232 (436)
T ss_dssp HTGGGCCSS-----C---CCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHH
T ss_pred HhcCccccc-----c---ccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCC
Confidence 888643210 0 11346999999999999999999999999888999999999999999999999999999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccc--hHHHHHH
Q psy17091 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ--RKIIKNN 317 (1250)
Q Consensus 240 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~ 317 (1250)
++++.+..+.+|.|+..+++.+++.||++++|+|++++.++++..++..+.+.++|+++|+||||+.+... .++..++
T Consensus 233 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~ 312 (436)
T 2hjg_A 233 MRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEEN 312 (436)
T ss_dssp HTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHH
T ss_pred cCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHH
Confidence 98887766778999988888899999999999999999999999999999999999999999999986543 3456677
Q ss_pred HHHHhccCCCCeEEEeecCCCCChHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCcccccccceeeccccCCCCC
Q psy17091 318 IKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNP 397 (1250)
Q Consensus 318 l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~p 397 (1250)
+.+.+....+.|++++||++|.|++++++.+.+.+..+..+++++.+|+++.+++..++||...+++++++|++|+.++|
T Consensus 313 ~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~~i~y~~q~~~~p 392 (436)
T 2hjg_A 313 IRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKP 392 (436)
T ss_dssp HHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTT
T ss_pred HHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCcceeEEeEecCCCCC
Confidence 77888777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeCcCCCccHHHHHHHHHHHHhhhccccccccchhh
Q psy17091 398 PIIVIHGNRLKYIGNDYKRYLEKYFYRTFSLIDALEKNIVG 438 (1250)
Q Consensus 398 p~fvif~n~~~~~~~~y~r~l~~~~r~t~~li~~~~~~~vg 438 (1250)
|+|++|+|+++.++++|+|||+|++|+.|+|.|+|++..++
T Consensus 393 p~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~ 433 (436)
T 2hjg_A 393 PSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFAR 433 (436)
T ss_dssp TEEEEEESCGGGCCHHHHHHHHHHHHHHHCCTTSCCEEEEE
T ss_pred CEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCceeEEEEEe
Confidence 99999999999999999999999999999999999986543
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=1.5e-65 Score=620.17 Aligned_cols=428 Identities=34% Similarity=0.616 Sum_probs=364.1
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.|+|+|+|+||||||||+|+|++.+.+++.+.||+|+++....+.+.+..+.+|||||+... .+.+.+++..++..+++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG-DEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc-chHHHHHHHHHHHhhHh
Confidence 58999999999999999999999988889999999999999999999999999999998732 24557788899999999
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-hhHHhcCCCCcEecccccCCchhHHHHHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~ 160 (1250)
++|++|||+|++.+++..+.++.+++++.++|+++|+||+|+.+.... .+++.++++.++++||++|.|+.+|++.+.+
T Consensus 102 ~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp HCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred hCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHh
Confidence 999999999999999999999999999999999999999998765433 6778888888999999999999999999987
Q ss_pred hhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCC
Q psy17091 161 IELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240 (1250)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 240 (1250)
.++..... . .....++|+++|.+|||||||+|+|++.++..+++.+|||++.....+.+++..+.+|||||+
T Consensus 182 ~l~~~~~~-----~---~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~ 253 (456)
T 4dcu_A 182 HFKNIPET-----K---YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 253 (456)
T ss_dssp TGGGSCSS-----C---CCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGT
T ss_pred hccccccc-----c---cccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCC
Confidence 66532210 0 113468999999999999999999999988899999999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCcc--chHHHHHHH
Q psy17091 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHN--QRKIIKNNI 318 (1250)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l 318 (1250)
++..+..+..|+|+..+++.+++.+|++++|+|+++++++++..++.++.+.++|+++|+||||+.+.. ..++..+.+
T Consensus 254 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~ 333 (456)
T 4dcu_A 254 RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENI 333 (456)
T ss_dssp TTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHH
T ss_pred CcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHH
Confidence 887777777899998889889999999999999999999999999999999999999999999998643 346677778
Q ss_pred HHHhccCCCCeEEEeecCCCCChHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCcccccccceeeccccCCCCCC
Q psy17091 319 KKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPP 398 (1250)
Q Consensus 319 ~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~pp 398 (1250)
++.+.+..++|++++||++|.|++++++++.+.+..+..+++++.+|+++.+++..++||..++++++++|++|++++||
T Consensus 334 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~ki~y~~q~~~~pp 413 (456)
T 4dcu_A 334 RDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPP 413 (456)
T ss_dssp HHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTT
T ss_pred HHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCCCCCceeeEEEEecCCCCCC
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCcCCCccHHHHHHHHHHHHhhhccccccccchhh
Q psy17091 399 IIVIHGNRLKYIGNDYKRYLEKYFYRTFSLIDALEKNIVG 438 (1250)
Q Consensus 399 ~fvif~n~~~~~~~~y~r~l~~~~r~t~~li~~~~~~~vg 438 (1250)
+|++|+|+++.++++|+|||+|+||+.|+|.|+|++..+.
T Consensus 414 ~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~ 453 (456)
T 4dcu_A 414 SFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFAR 453 (456)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHHCCTTCCCEEEEE
T ss_pred EEEEEecCcccCCHHHHHHHHHHHHHhCCCCceeEEEEEe
Confidence 9999999999999999999999999999999999986543
No 4
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=1.4e-64 Score=608.58 Aligned_cols=429 Identities=33% Similarity=0.497 Sum_probs=350.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+|++||+||||||||+|+|++++.+++++.||+|+|+..+.+.|++..+.+|||||+.....+.+.+.+..++..+++
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 48999999999999999999999998889999999999999999999999999999999754434456678889999999
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC--ccc-hhHHhcCCCCcEecccccCCchhHHHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS--SIS-LDFYELGIGNPHIISALYGNGIKNFLENI 158 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~--~~~-~~~~~~~~~~~~~iSA~~g~gi~~L~~~i 158 (1250)
+||++|||+|++.+.+..+..+.+++++.++|+++|+||+|+.+. ... .+++.+++++++++||+||.|+++|++.+
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i 160 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETI 160 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHH
Confidence 999999999999999998888999999889999999999998643 122 56677888889999999999999999999
Q ss_pred HHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecC
Q psy17091 159 LTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238 (1250)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTp 238 (1250)
.+.+++.... ..+.. .....++|+|+|+||||||||+|+|+|..+..+++.||||++.....+.++|..+.+||||
T Consensus 161 ~~~l~~~~~~---~~~~~-~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~ 236 (439)
T 1mky_A 161 IKKLEEKGLD---LESKP-EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 236 (439)
T ss_dssp HHHHHHTTCC---SSSCC-CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCS
T ss_pred HHhccccccc---chhcc-ccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECC
Confidence 9887643210 00000 1134699999999999999999999999988899999999999999999999999999999
Q ss_pred CCCCCCcch-hhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccc--hHHHH
Q psy17091 239 GIRRRNKTF-EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ--RKIIK 315 (1250)
Q Consensus 239 G~~~~~~~~-~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~ 315 (1250)
|+.+..... ...+.|...++..+++.+|++++|+|++.+.+.++..+...+.+.++|+++|+||||+.+... ..+..
T Consensus 237 G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~ 316 (439)
T 1mky_A 237 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFT 316 (439)
T ss_dssp CC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHH
T ss_pred CCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHH
Confidence 997654332 334555556667788999999999999999999999888888889999999999999986433 45566
Q ss_pred HHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCcccccccceeeccccCCC
Q psy17091 316 NNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGK 395 (1250)
Q Consensus 316 ~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~ 395 (1250)
+.+.+.+.+..+.|++++||++|.|++++++.+.+.+..+..+++|+.+|+++.+++..++|| ++.|++|++|+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~~----~~~ki~y~~q~~~ 392 (439)
T 1mky_A 317 KLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLP----RGLKIFFGVQVDI 392 (439)
T ss_dssp HHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCS----TTCCEEEEEEEET
T ss_pred HHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCC----CCcEEEEEEecCC
Confidence 677777777778899999999999999999999999999999999999999999999988888 7899999999999
Q ss_pred CCCceEEEeCcCCCccHHHHHHHHHHHHh-hhccccccccchhh
Q psy17091 396 NPPIIVIHGNRLKYIGNDYKRYLEKYFYR-TFSLIDALEKNIVG 438 (1250)
Q Consensus 396 ~pp~fvif~n~~~~~~~~y~r~l~~~~r~-t~~li~~~~~~~vg 438 (1250)
+||+|++|+|+++.++++|+|||+|++|+ .|++.|+|++..+.
T Consensus 393 ~p~~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~~~~pi~~~~~ 436 (439)
T 1mky_A 393 KPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFK 436 (439)
T ss_dssp TTTEEEEEESCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEEE
T ss_pred CCCEEEEEEcCcccCCHHHHHHHHHHHHHhhCCCCCCCEEEEEe
Confidence 99999999999999999999999999999 99999999876543
No 5
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=5e-60 Score=567.66 Aligned_cols=420 Identities=48% Similarity=0.811 Sum_probs=353.3
Q ss_pred cCCCCCCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccC-Cccccc
Q psy17091 819 FNCFPNSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELN-GDNLSL 892 (1250)
Q Consensus 819 ~n~~~~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~-g~~l~L 892 (1250)
+.+..+....-|....+ +.++++++++||. .|++|..+..+.+.+. .+..++.+.++||+|.|+ + |+.++|
T Consensus 32 ~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~-eI~tP~le~~el~~~~-~G~~~d~~~~~my~~~D~-~~g~~l~L 108 (467)
T 4e51_A 32 LTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQ-NIRTPIVEHTPLFTRG-IGEVTDIVEKEMYSFVDA-LNGENLTL 108 (467)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCE-ECBCCSEEEHHHHHHH-TCTTSHHHHHTCCEEECT-TTCCEEEE
T ss_pred CCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCE-EEECCccccHHHhhhc-cCCcccccccceEEEecC-CCCCEEEe
Confidence 45555555545544332 3477788899999 8999999999998632 234467778999999998 8 999999
Q ss_pred CCCCcHHHHHHHHHcCCCCCCCeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCce
Q psy17091 893 RPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNI 972 (1250)
Q Consensus 893 RpD~T~~iaR~~a~~~~~~~~P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~ 972 (1250)
|||+|+|+||+++++..++++|+|+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.||++++
T Consensus 109 RPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~lGl~~~ 188 (467)
T 4e51_A 109 RPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTGI 188 (467)
T ss_dssp CSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHHTCCCE
T ss_pred CcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHcCCCce
Confidence 99999999999999877778999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHH
Q psy17091 973 CLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYG 1052 (1250)
Q Consensus 973 ~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1052 (1250)
.|+|||++..+....+...+.+++...... +++++...+..++++.++++.....+++..++.+.+.+..++++++..
T Consensus 189 ~i~in~~g~~~~~~~~~~~l~~~l~~~~~~--l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~~~~~l~~ 266 (467)
T 4e51_A 189 KLEINSLGLAEERAAHRVELIKYLEQHADK--LDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEG 266 (467)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHHHHTTGGG--CCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHHHHHHHHH
T ss_pred EEEEeCCCchhhhHHHHHHHHHHHHHHHhc--cCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHHHHHHHHH
Confidence 999999998887776777777777765332 667777777777777777777667777888888877777778889999
Q ss_pred HHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHc
Q psy17091 1053 IQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKI 1132 (1250)
Q Consensus 1053 l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~ 1132 (1250)
+.+.|+..|+++.+||+++||++||||+||+++.+..|...+|++|||||+|++.||+++.|||||++++|||+.+|.+.
T Consensus 267 l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~~~~PavGfa~gleRl~~~l~~~ 346 (467)
T 4e51_A 267 LQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWAMGIERILELLKEE 346 (467)
T ss_dssp HHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTSSCCCEEEEEEEHHHHHHHHHHT
T ss_pred HHHHHHHcCCeEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCCCCCCceeehHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999877667999999999999999988899999999999999999988
Q ss_pred cCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeE
Q psy17091 1133 NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTL 1212 (1250)
Q Consensus 1133 ~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v 1212 (1250)
+.+|. .+|++|+|++++++...+|++++++||++|++|++++.....+.++++++++|++.|+||+||||++|+++|+|
T Consensus 347 ~~~~~-~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~~E~~~g~V 425 (467)
T 4e51_A 347 HLVPE-QEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVTNGTA 425 (467)
T ss_dssp TCCCC-CCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECHHHHHHTEE
T ss_pred CCccc-CCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEECcchhhCCeE
Confidence 76544 67899999999998889999999999999999999864100137899999999999999999999999999999
Q ss_pred EEEEcCC-CCCCCCCcceeeehHHHHHHHHHHH
Q psy17091 1213 IIKDLRN-KYEDPTLKQISISFKDAENYFYKKI 1244 (1250)
Q Consensus 1213 ~vk~~~~-~~~~~~~~e~~v~~~el~~~l~~~i 1244 (1250)
+||++.+ +.++++.+|..|++++++++|++++
T Consensus 426 ~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 426 SVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp EEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred EEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 9999998 5334556789999999999999887
No 6
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=2.5e-58 Score=549.03 Aligned_cols=403 Identities=18% Similarity=0.272 Sum_probs=303.6
Q ss_pred eEeeeccCCCCCCCCCCCcHHH-----HHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCC
Q psy17091 813 KINLIPFNCFPNSNLICSKNSR-----IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNG 887 (1250)
Q Consensus 813 ~vnlip~n~~~~~~~~~p~~e~-----i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g 887 (1250)
+-|.+.+.+..+....-|.... .+.++++++++|+. .|++|..+..+.+... ..+...++||+|.|+ +|
T Consensus 23 ~~~m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~-eI~tP~lE~~el~~~~----~G~~~~~~my~f~D~-~g 96 (456)
T 3lc0_A 23 QKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFE-EYDAPVLESEELYIRK----AGEEITEQMFNFITK-GG 96 (456)
T ss_dssp --CCCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCE-ECCCCSEEEGGGGCCC----SCCHHHHTCEEEECS-SS
T ss_pred hhccccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCE-EEECCcEeehhhhccc----cccchhhceEEEEcC-CC
Confidence 4455666666665544444332 23577888899999 8999999999987521 111256899999999 99
Q ss_pred cccccCCCCcHHHHHHHHHcCCCCCCCeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHC
Q psy17091 888 DNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 967 (1250)
Q Consensus 888 ~~l~LRpD~T~~iaR~~a~~~~~~~~P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~l 967 (1250)
+.++||||+|+|+||+++++....++|+|+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+
T Consensus 97 ~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~l 176 (456)
T 3lc0_A 97 HRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSL 176 (456)
T ss_dssp CEEEECSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHT
T ss_pred CEEecCCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHc
Confidence 99999999999999999998765678999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CceEEEeCCCcChhhHHHHH-------HHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHH--hhhh
Q psy17091 968 NL--KNICLELNSIGNFNERKKYC-------IDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREIL--INAP 1036 (1250)
Q Consensus 968 gl--~~~~i~i~~~~i~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~ 1036 (1250)
|+ +++.|+|||+++++++++.+ ..+...+++.... ..+.....+....+. ......+..++ ..++
T Consensus 177 gl~~~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~--~~~~~~~~L~~~~l~--~~~~~~l~~~~~~~~~~ 252 (456)
T 3lc0_A 177 GLSSKDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKI--PREEVEAQLAVLGLE--PTVVDAITTTLSLKSID 252 (456)
T ss_dssp TCCTTTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTS--CHHHHHHHHHHTTCC--HHHHHHHHHHHTCCSHH
T ss_pred CCCCCceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--CHHHHHHHHHHcCCC--HHHHHHHHHHhccCCHH
Confidence 99 78999999999998877543 2333444433221 112222222111110 00000011111 1112
Q ss_pred hHHHHHH--HhHHHHHHHHHHHHhhCCce--EEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCC-
Q psy17091 1037 KLLDYLE--KDSLDHFYGIQKILNYNNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNK- 1111 (1250)
Q Consensus 1037 ~~~~~l~--~~~~~~l~~l~~~l~~~gi~--i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~- 1111 (1250)
.+.+.+. ..++++|..+.++++.+|+. +.+||+++||++||||+|||+|.+. +..++||+|||||+|++.||++
T Consensus 253 ~l~~~l~~~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~-g~~~~I~~GGRYD~Lv~~fg~~~ 331 (456)
T 3lc0_A 253 EIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDRE-GKFRALCGGGRYDNLLTTYGSPT 331 (456)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETT-SCSSCSEEEEECSSHHHHTTCSS
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECC-CCcceEeecccHHHHHHHhCCCC
Confidence 2222221 23578888899999888986 9999999999999999999999753 4457999999999999999997
Q ss_pred CCCeEEEEEeHHHHHHHHHHccCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHH
Q psy17091 1112 FVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRA 1191 (1250)
Q Consensus 1112 ~~pavGfsi~lerl~~~l~~~~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A 1191 (1250)
+.||||||+|+|||+.+|.+.+..++...+++++|++.+++...++++++++||++|++|++++. ..++++++++|
T Consensus 332 ~~PavGFaig~eRl~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A 407 (456)
T 3lc0_A 332 PIPCAGFGFGDCVIVELLQEKRLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILD----KKKVVQAFNYA 407 (456)
T ss_dssp CCCEEEEEEESSHHHHHHHHTTCCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHH
T ss_pred CCCEEEEEeEHHHHHHHHHhcCCCCccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHH
Confidence 89999999999999999988776555555689999999998889999999999999999999876 67899999999
Q ss_pred HHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHH
Q psy17091 1192 NASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDA 1236 (1250)
Q Consensus 1192 ~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el 1236 (1250)
++.||||+||||++|+++|+|+|||+.++ +|..++.++.
T Consensus 408 ~k~ga~~vviiGe~E~~~g~v~vK~l~tg------eQ~~~~~~~~ 446 (456)
T 3lc0_A 408 DRVGAVRAVLVAPEEWERGEVQVKMLREG------TGKEEGGAER 446 (456)
T ss_dssp HHTTEEEEEEECHHHHHTTEEEEEECC------------------
T ss_pred HHcCCCEEEEECCchhcCCeEEEEECCCC------CeEEeccccc
Confidence 99999999999999999999999999999 8888887653
No 7
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=9.1e-57 Score=538.53 Aligned_cols=391 Identities=33% Similarity=0.562 Sum_probs=331.1
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC-CCCe
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGPK 915 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~ 915 (1250)
.++++++++|+. .|.+|..+..+.+.. -.+..++.+.++||+|.|+ +|+.++||||+|+|+||+++++..++ ++|+
T Consensus 26 ~i~~~~~~~G~~-ei~tP~le~~el~~~-~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~ 102 (421)
T 1h4v_B 26 TARKVLEAAGAL-ELVTPIFEETQVFEK-GVGAATDIVRKEMFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPV 102 (421)
T ss_pred HHHHHHHHcCCE-EecccccccHHHhhh-ccCCcccccccceEEEECC-CCCEEeeCCcchHHHHHHHHhccccccCCCe
Confidence 477778899999 899999999999852 1234477788999999999 99999999999999999999874443 7899
Q ss_pred eEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHH
Q psy17091 916 RLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINY 995 (1250)
Q Consensus 916 r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~ 995 (1250)
|+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|++.++.++|+++|++++.+++||++..+....+...+.++
T Consensus 103 rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~~~i~i~~~g~~~~~~~~~~~l~~~ 182 (421)
T 1h4v_B 103 RLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREV 182 (421)
T ss_pred EEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHcCCCceEEEEcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999998766554444444444
Q ss_pred HHhccCchhhhHHHHHHhhhccccccccccHHHHHHHh--hhhhHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCC
Q psy17091 996 IKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILI--NAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRG 1073 (1250)
Q Consensus 996 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~ 1073 (1250)
+...... +++.+...+...+++.++..+....+++. .++.+.+.+..++++++..+.+.++..|+.+.+|++++++
T Consensus 183 l~~~~~~--l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~l~~~g~~i~~D~~l~rg 260 (421)
T 1h4v_B 183 LSPHREA--LSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVERHLERLSVPYELEPALVRG 260 (421)
T ss_pred HHHHHhh--cCHHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4332111 23344444443444444444434445555 5666666555667788899999999899999999999999
Q ss_pred CCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccCCCCCCCCceEEEEEcChHH
Q psy17091 1074 MDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEA 1153 (1250)
Q Consensus 1074 ~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~~~~~~~~~~v~V~~~~~~~ 1153 (1250)
++||||++||++..+.+..++|++|||||+|++.||+++.||+|||+++|||+.++.+++..|++.+|++|+|++.+++.
T Consensus 261 ~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~pa~Gf~igieRl~~~l~e~~~~~~~~~p~~v~i~~~~~~~ 340 (421)
T 1h4v_B 261 LDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEA 340 (421)
T ss_pred hhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCCeEEEeecHHHHHHHHHhcCcCCCCCCCCeEEEEECChHH
Confidence 99999999999987666667999999999999999988899999999999999999998865555689999999999888
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeeh
Q psy17091 1154 ELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISF 1233 (1250)
Q Consensus 1154 ~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~ 1233 (1250)
..+|.+++++||++ ++|+++++ ++++++++++|++.|+||+|+||++|+++|+|+||++.++ ++..|++
T Consensus 341 ~~~a~~l~~~Lr~~-i~v~~d~~----~~~~~~~~~~a~~~g~p~~iivG~~e~~~~~v~vk~~~~~------~~~~v~~ 409 (421)
T 1h4v_B 341 VAEAFYLAEALRPR-LRAEYALA----PRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATG------EQVRLSR 409 (421)
T ss_pred HHHHHHHHHHHHhc-CEEEEecC----CCCHHHHHHHHHhCCCCEEEEECchHhhcCcEEEEECCCC------CceEECH
Confidence 88999999999999 99999876 6799999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHH
Q psy17091 1234 KDAENYFYKK 1243 (1250)
Q Consensus 1234 ~el~~~l~~~ 1243 (1250)
+++++++++.
T Consensus 410 ~el~~~l~~~ 419 (421)
T 1h4v_B 410 EEVPGYLLQA 419 (421)
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 8
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=3.7e-58 Score=552.47 Aligned_cols=382 Identities=21% Similarity=0.318 Sum_probs=297.9
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccc-eeeecccc--------------CCcccccCCCCcHHH
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKE-MYSFIDEL--------------NGDNLSLRPEGTASV 900 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~-~~~~~D~~--------------~g~~l~LRpD~T~~i 900 (1250)
+.++++++++||. .|++|..+..+.+.+. + + ..++ ||+|.|+. +|+.++||||+|+|+
T Consensus 34 ~~l~~~~~~~Gy~-~i~tP~~E~~~~~~~~--G---~-~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~~~ 106 (465)
T 3net_A 34 DTIRRVYESYGFT-PIETPAVERLEVLQAK--G---N-QGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPL 106 (465)
T ss_dssp HHHHHHHHHTTCE-ECCCCSEEEHHHHHGG--G---C-C--CBEEEEEEEC----------------CCEEECSCSHHHH
T ss_pred HHHHHHHHHcCCE-EeeccccccHHHHhcc--C---C-CCccceEEEecccccccccccccccCCCCCEEEeCCCChHHH
Confidence 3577888899999 8999999999998743 2 2 2356 99999972 289999999999999
Q ss_pred HHHHHHcCCCCCCCeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchh--chHHHHHHHHHHHHCCCCceEEEeCC
Q psy17091 901 IRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDI--DAELIIMCSRLWKNLNLKNICLELNS 978 (1250)
Q Consensus 901 aR~~a~~~~~~~~P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~a--daEvi~l~~~~l~~lgl~~~~i~i~~ 978 (1250)
||+++++....+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+ |+|+|.++.++|+.+|+++++|+|||
T Consensus 107 aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~lgl~~~~i~in~ 186 (465)
T 3net_A 107 AAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINN 186 (465)
T ss_dssp HHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCSCEEEEEEE
T ss_pred HHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHcCCCceEEEECC
Confidence 9999998755578999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CcChhhHHHHH-------HHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHH----------HHHhhhhhHH--
Q psy17091 979 IGNFNERKKYC-------IDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIR----------EILINAPKLL-- 1039 (1250)
Q Consensus 979 ~~i~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~----------~~~~~~~~~~-- 1039 (1250)
+++++++++.+ ..+.+.+++.... ..+.....+....+ .......+. +.+..+..++
T Consensus 187 ~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~--~~~~~~~~l~~~~l--~~~~~~~l~~l~~~~g~~~~~l~~l~~~~~~ 262 (465)
T 3net_A 187 RKVLTGFFQSLNISETQIKSCISIIDNLEKI--GEAKVKLELEKEGI--NPEQTQKIIDFVKIDGSVDDVLDKLKHLSQT 262 (465)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTTHHHH--HHHHHHHHHHHTTC--CHHHHHHHHHHHTCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcccc--CHHHHHHHHHhcCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Confidence 99888776433 3344444332110 11111111110000 000000111 1111111111
Q ss_pred ---HHHHHhHHHHHHHHHHHHhh--CCce----EEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhc-C
Q psy17091 1040 ---DYLEKDSLDHFYGIQKILNY--NNIS----YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKF-S 1109 (1250)
Q Consensus 1040 ---~~l~~~~~~~l~~l~~~l~~--~gi~----i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f-g 1109 (1250)
.....+++++|..+. |+. .+ . +.|||+++||++||||+|||+|.++.+..++||+|||||+|++.| |
T Consensus 263 ~~~~~~~~~~l~~l~~~~--l~~~~~~-~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~g 339 (465)
T 3net_A 263 LPESEQFNLGVSELETVI--TGVRNLG-VPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIG 339 (465)
T ss_dssp STTCHHHHHHHHHHHHHH--HHHHHTT-CCGGGEEECTTCCCCSSSEEEEEEEEEETTCGGGCCSSEEEEESSSSGGGTC
T ss_pred cccChHHHHHHHHHHHHH--HHHhccc-ccCceEEEccCccCCCcccCceEEEEEECCCCccceecccccHHHHhhhhcC
Confidence 011234666777765 333 23 6 999999999999999999999998765556999999999999966 7
Q ss_pred CCCCCeEEEEEeHHHHHHHHHHccCCCC-CCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHH
Q psy17091 1110 NKFVPASGFAIGIERLIELIKKININHN-FSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQM 1188 (1250)
Q Consensus 1110 ~~~~pavGfsi~lerl~~~l~~~~~~~~-~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~ 1188 (1250)
++ .||||||+|+|||+.+|.+++.||. +.+|++|+|++.+++...+|++++++||++|++|++++. +.++++++
T Consensus 340 ~~-~pavGfaiGieRli~~L~e~g~~p~~~~~p~~V~Vi~~~~~~~~~A~~la~~LR~~Gi~ve~d~~----~~sl~~q~ 414 (465)
T 3net_A 340 EK-MPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFE----KRQLGKQF 414 (465)
T ss_dssp SC-CCEEEEEEEHHHHHHHHHHTTSSCCCCSCSCCEEECCSCGGGHHHHHHHHHHHHHTTCCEEECCS----CCCHHHHH
T ss_pred CC-CceeeeeccHHHHHHHHHHcCCCCCcCCCCCeEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEeC----CCCHHHHH
Confidence 76 9999999999999999999998886 788999999999998999999999999999999999977 68999999
Q ss_pred HHHHHcCCCEEEEEccCcccCC-eEEEEEcCCCCCCCCCcceeeehHHHHHHHHHH
Q psy17091 1189 KRANASNANFAAIIGENEIINN-TLIIKDLRNKYEDPTLKQISISFKDAENYFYKK 1243 (1250)
Q Consensus 1189 ~~A~~~gip~~viig~~e~~~g-~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~ 1243 (1250)
++|++.|+||+||||++ +++| +|+||+|.++ +|..|++++++++|++.
T Consensus 415 k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~------eq~~v~~~el~~~l~~~ 463 (465)
T 3net_A 415 QAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSG------EQVEVALADLAEEIKRR 463 (465)
T ss_dssp HHHHHHTCCEEEECCHH-HHHTTCCEEEETTTT------EEEECC-CCHHHHHHHT
T ss_pred HHHHHcCCCEEEEECch-hhcCCEEEEEECCCC------ceEEeeHHHHHHHHHHh
Confidence 99999999999999999 9999 9999999999 99999999999998764
No 9
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=2.8e-57 Score=543.36 Aligned_cols=392 Identities=45% Similarity=0.783 Sum_probs=306.4
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCCee
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKR 916 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P~r 916 (1250)
.++++++++|+. .|.+|..+..+.+... .++.++.+.++||+|.|+ +|+.++||||+|+|+||+++++....++|+|
T Consensus 27 ~i~~~~~~~G~~-ei~tP~le~~el~~~~-~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~aR~~~~~~~~~~~P~r 103 (423)
T 1htt_A 27 TLKNVLGSYGYS-EIRLPIVEQTPLFKRA-IGEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQR 103 (423)
T ss_dssp HHHHHHHTTTCE-ECBCCSEEEHHHHHHH-HCSSSHHHHHTCEEEECT-TSCEEEECSCSHHHHHHHHHHHTCSTTCCEE
T ss_pred HHHHHHHHcCCE-EecccccCHHHHHhhc-cCCchhhhhhheEEEEcC-CCCEEEeCCCchHHHHHHHHhcccccCCCeE
Confidence 477788899999 8999999999998632 134467778899999999 9999999999999999999987544478999
Q ss_pred EEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCC-CceEEEeCCCcChhhHHHHHHHHHHH
Q psy17091 917 LWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL-KNICLELNSIGNFNERKKYCIDLINY 995 (1250)
Q Consensus 917 ~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl-~~~~i~i~~~~i~~~~~~~~~~~~~~ 995 (1250)
+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|++.++.++|+++|+ +++.+++||++..+....+...+.++
T Consensus 104 l~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~~~~i~i~~~g~~~~~~~~~~~l~~~ 183 (423)
T 1htt_A 104 LWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAF 183 (423)
T ss_dssp EEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHTCGGGCEEEEEECCCHHHHHHC-------
T ss_pred EEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHCCCCCCcEEEEcCCCChhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 88999999998765543333333333
Q ss_pred HHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCC
Q psy17091 996 IKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMD 1075 (1250)
Q Consensus 996 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~ 1075 (1250)
+...... +++.+...+..++++.++..+....+++..++.+...+..++++++..+.+.++..|+.+.+|++++++++
T Consensus 184 l~~~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~~~l~~~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~ 261 (423)
T 1htt_A 184 LEQHKEK--LDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLD 261 (423)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHHHTTTCCCEECTTCCCSST
T ss_pred HHHHHhc--cCHHHHHHHHhchhHhhhcccHHHHHHHhcchHHHhhhhHHHHHHHHHHHHHHHHcCCeEEEccccccchH
Confidence 3221111 22333333322333444433333344454555555444456788899999999999999999999999999
Q ss_pred CCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccCCCCCCCCceEEEEEcChHHHH
Q psy17091 1076 YYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHNFSHQCDIYIVHVGKEAEL 1155 (1250)
Q Consensus 1076 YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~~~~~~~~~~v~V~~~~~~~~~ 1155 (1250)
||||++||++..+.+...+|++|||||+|++.||+++.||+|||+++|||+.++.+++..|++.+|++|+|++.+++...
T Consensus 262 YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~pavGf~igveRl~~~l~e~~~~~~~~~p~~v~i~~~~~~~~~ 341 (423)
T 1htt_A 262 YYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQS 341 (423)
T ss_dssp TCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCCEEEEEEEHHHHHHHHHHHSTTCCCCCSCSEEEEECSTTHHH
T ss_pred HHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCCeEEEEecHHHHHHHHHhcCcCCCCCCCCcEEEEEcCHHHHH
Confidence 99999999998765666799999999999999998889999999999999999999886556678999999999888888
Q ss_pred HHHHHHHHHHHc--CCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeeh
Q psy17091 1156 KAFVLSENLRTL--GLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISF 1233 (1250)
Q Consensus 1156 ~a~~~a~~Lr~~--gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~ 1233 (1250)
+|.+++++||++ |++|++++. +.++++++++|++.|+||+|+||++|+++|+|+||++.++ ++..|++
T Consensus 342 ~a~~l~~~Lr~~~~Gi~v~~d~~----~~~~~~~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~------~~~~v~~ 411 (423)
T 1htt_A 342 AAMALAERLRDELPGVKLMTNHG----GGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSG------EQTAVAQ 411 (423)
T ss_dssp HHHHHHHHHHHHSTTCCEEECCS----CCCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEETTTC------CEEEEEH
T ss_pred HHHHHHHHHHcCCCCcEEEEeCC----CCCHHHHHHHHHHcCCCEEEEECchhhhcCeEEEEECCCC------CceEEcH
Confidence 999999999999 999999876 5799999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHH
Q psy17091 1234 KDAENYFYKK 1243 (1250)
Q Consensus 1234 ~el~~~l~~~ 1243 (1250)
+|+++++++.
T Consensus 412 ~el~~~l~~~ 421 (423)
T 1htt_A 412 DSVAAHLRTL 421 (423)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 10
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=4.2e-56 Score=544.04 Aligned_cols=389 Identities=20% Similarity=0.311 Sum_probs=301.9
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCCe
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPK 915 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P~ 915 (1250)
+.++++++++||. .|++|..+..+.+.+.. ....+.||+|.|+ +|+.++||||+|+|+||+++++.. .|+
T Consensus 89 ~~i~~~~~~~Gy~-eI~tP~lE~~el~~~~~-----ge~~~~my~f~D~-~g~~l~LRPd~T~~~aR~~~~~~~---~p~ 158 (517)
T 4g85_A 89 DVIIRCFKRHGAE-VIDTPVFELKETLMGKY-----GEDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNKL---TNI 158 (517)
T ss_dssp HHHHHHHHHHTCE-ECBCCSEEEHHHHHCC-----------CSCBBCCT-TSCCEEECSCSHHHHHHHHHHTTC---SCE
T ss_pred HHHHHHHHHCCCe-EEECcccCcHHHhhccc-----CcCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhCCC---CCc
Confidence 4577888899999 89999999999886432 1234679999999 999999999999999999998754 799
Q ss_pred eEEEEeceeecCCC--CCCCCCceEEeeEEEecCCC-chhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHH---
Q psy17091 916 RLWYSGPMFRHERP--QYGRYRQFYQIGVEAIGFPG-PDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYC--- 989 (1250)
Q Consensus 916 r~yy~g~VfR~e~~--~~gr~REf~Q~g~eiig~~~-~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~--- 989 (1250)
|+||+|+|||+|+| +.||+|||+|+|+|+||..+ ..+|+|+|.++.++|+.+|++++.++|||++++++++..+
T Consensus 159 k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~~~i~in~~~~l~~~~~~~~~~ 238 (517)
T 4g85_A 159 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVS 238 (517)
T ss_dssp EEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHTCC
T ss_pred eeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHhhcch
Confidence 99999999999998 56999999999999999755 5679999999999999999999999999999988876543
Q ss_pred ----HHHHHHHHhccCchhhhHHHHHHhhh-cccc-----------ccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Q psy17091 990 ----IDLINYIKKHKDSKWFCEDIKHSLYL-NSLR-----------VLDSKNLIIREILINAPKLLDYLEKDSLDHFYGI 1053 (1250)
Q Consensus 990 ----~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~-----------~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l 1053 (1250)
..+...+++.... ..+.....+.. ..+. ...........+....+........++++++..+
T Consensus 239 ~~~~~~~~~~ld~ldk~--~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 316 (517)
T 4g85_A 239 DSKFRTICSSVDKLDKV--SWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLL 316 (517)
T ss_dssp HHHHHHHHHHHHTTTTS--CHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHHHHHHCHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcch--hHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 3344444443322 11222211110 0000 0000001111122211111222334567888999
Q ss_pred HHHHhhCCc--eEEEeCCCCCCCCCCcceEEEEEECCCCCC--------cceeecccchHHHHhc--CCCCCCeEEEEEe
Q psy17091 1054 QKILNYNNI--SYKINTKLVRGMDYYNRTVFEWTTDKLGSQ--------NSICGGGRYDFLIKKF--SNKFVPASGFAIG 1121 (1250)
Q Consensus 1054 ~~~l~~~gi--~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~--------~~i~~GGRYD~L~~~f--g~~~~pavGfsi~ 1121 (1250)
.++++..|+ ++.+|++++||++||||++||++..+.+.. ++||+|||||+|++.| ++++.|||||++|
T Consensus 317 ~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GGRYD~Lv~~f~~~G~~~pavGfa~g 396 (517)
T 4g85_A 317 FEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIG 396 (517)
T ss_dssp HHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEEEECHHHHHTTSSSCCCCCEEEEEEC
T ss_pred HHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCCCchhHHHHHhccCCCCCCcccccch
Confidence 999998886 599999999999999999999998665432 5899999999999999 4678999999999
Q ss_pred HHHHHHHHHHcc---CCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCE
Q psy17091 1122 IERLIELIKKIN---INHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANF 1198 (1250)
Q Consensus 1122 lerl~~~l~~~~---~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~ 1198 (1250)
+|||+.+|.+.+ .++.+.++++|+|++.+++...+|++++++||++||+|++++. ...++++++++|++.||||
T Consensus 397 ierl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~ 473 (517)
T 4g85_A 397 VERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPL 473 (517)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECSS---SSCCHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCE
Confidence 999999997643 2445567899999999999999999999999999999999864 2468999999999999999
Q ss_pred EEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHH
Q psy17091 1199 AAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 1245 (1250)
Q Consensus 1199 ~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~ 1245 (1250)
+||||++|+++|+|+||||.++ +|..|+++||+++|++++.
T Consensus 474 ~viiG~~E~~~g~v~vK~l~tg------eq~~v~~~elv~~lk~~l~ 514 (517)
T 4g85_A 474 VAIIGEQELKDGVIKLRSVTSR------EEVDVRREDLVEEIKRRTG 514 (517)
T ss_dssp EEEECHHHHHTTEEEEEETTTC------CEEEEEHHHHHHHHHHHCC
T ss_pred EEEECChhHhCCEEEEEECCCC------CeEEeeHHHHHHHHHHHhc
Confidence 9999999999999999999999 9999999999999998763
No 11
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=5.8e-56 Score=532.52 Aligned_cols=383 Identities=24% Similarity=0.382 Sum_probs=322.9
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCCee
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKR 916 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P~r 916 (1250)
.++++++++|+. .|.+|..+..+.+... .++ .+.++||+|.|+ +|+.++||||+|+|+||+++++ ..+++|+|
T Consensus 29 ~i~~~~~~~G~~-ei~tP~le~~el~~~~--~G~--~~~~em~~~~D~-~g~~l~LrPd~t~~~aR~~~~~-~~~~lP~r 101 (434)
T 1wu7_A 29 TAEEAAEAFGFR-RIDFPSLEYLDLYRIK--SGE--ELLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSR-KDLQRPLR 101 (434)
T ss_dssp HHHHHHHHTTCE-ECBCCSEEETHHHHTT--SCT--TGGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTC-TTCCSSEE
T ss_pred HHHHHHHHcCCE-EeeccccccHHHhhhc--cCC--ccccceEEEECC-CCCEEEeCCCChHHHHHHHHhc-CCCCCCeE
Confidence 477788899999 8999999999998621 111 467899999999 9999999999999999999987 54578999
Q ss_pred EEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCc-eEEEeCCCcChhhHHHHH--H---
Q psy17091 917 LWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKN-ICLELNSIGNFNERKKYC--I--- 990 (1250)
Q Consensus 917 ~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~-~~i~i~~~~i~~~~~~~~--~--- 990 (1250)
+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|++.++.++|+.+|+++ +.+++||+++++..+... .
T Consensus 102 l~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~~~~~i~l~~~g~~~~~~~~~g~~~~~ 181 (434)
T 1wu7_A 102 WYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSDPF 181 (434)
T ss_dssp EEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHHHHHHTTCSSCHH
T ss_pred EEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCCCCceEEEECChhhHHHHHHHhCcHhHH
Confidence 9999999999999999999999999999999999999999999999999999977 999999999887765211 1
Q ss_pred HHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHH------HhHHHHHHHHHHHHhhCCce-
Q psy17091 991 DLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLE------KDSLDHFYGIQKILNYNNIS- 1063 (1250)
Q Consensus 991 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~------~~~~~~l~~l~~~l~~~gi~- 1063 (1250)
.+.++++..... .++.+...+....+. ++....+.+++...+.+.+ +. .++++++.++.+.++..|+.
T Consensus 182 ~l~~~l~~~~~~--~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~l~~~~~~l~~~g~~~ 256 (434)
T 1wu7_A 182 SVFSIIDRYHKI--SREEFVDQLRSAGIG--EDGVSMIADLCSGTRGIDE-MARITGKSSEEIARMAAVEDLLASYGVKN 256 (434)
T ss_dssp HHHHHHHTTTTS--CHHHHHHHHHHTTCC--HHHHHHHHHHHHSCBCHHH-HHHHTTCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcc--chHHHHHHHHhCCCC--HHHHHHHHHHHHhCCCHHH-HHHHHhhHHHHHHHHHHHHHHHHHcCCCE
Confidence 356666655332 334444444333332 1222333444443444333 33 36788899999999999998
Q ss_pred EEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccCC-CCCCCCc
Q psy17091 1064 YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININ-HNFSHQC 1142 (1250)
Q Consensus 1064 i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~~-~~~~~~~ 1142 (1250)
+.+|++++++++||||++|+++... +...+|++|||||+|++.||+++.||+|||+++|||+.++.+++.| |. +|+
T Consensus 257 i~~D~~l~rgldYYtg~vFe~~~~~-g~~~~v~~GGRYD~li~~fgg~~~pa~Gf~igveRl~~~l~e~~~~~p~--~p~ 333 (434)
T 1wu7_A 257 VRYDFSIVRGLSYYTGIVFEAYDRS-GQFRAILGGGRYDNLASLMSGESVPAVGFGMGDAVISLLLKRENVQIPR--EKK 333 (434)
T ss_dssp CEECTTCCTTTTTCSSEEEEEEETT-SSCSCSSEEEECTTHHHHHHSCCCCEEEEEEEHHHHHHHHHHTTCCCCC--SSC
T ss_pred EEECCCcccCccccCCeEEEEEECC-CCcCeeeecccHHHHHHHhCCCCCCeEEEEEcHHHHHHHHHhcCCccCC--CCC
Confidence 9999999999999999999999753 3456999999999999999877899999999999999999998877 65 679
Q ss_pred eEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCC
Q psy17091 1143 DIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYE 1222 (1250)
Q Consensus 1143 ~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~ 1222 (1250)
+|+|++.+++...+|.+++++||++|++|+++++ ++++++++++|++.|+||+||||++|+++|+|+||++.++
T Consensus 334 ~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~----~~~~~~~~~~a~~~g~~~~iiiG~~e~~~g~v~vk~~~~~-- 407 (434)
T 1wu7_A 334 SVYICRVGKINSSIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTG-- 407 (434)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTC--
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHCCCCEEEEECchhhhcCeEEEEECCCC--
Confidence 9999999887888999999999999999999876 6799999999999999999999999999999999999999
Q ss_pred CCCCcceeeehHHHHHHHHHHH
Q psy17091 1223 DPTLKQISISFKDAENYFYKKI 1244 (1250)
Q Consensus 1223 ~~~~~e~~v~~~el~~~l~~~i 1244 (1250)
++..|+++++++++++.+
T Consensus 408 ----~~~~v~~~el~~~l~~~~ 425 (434)
T 1wu7_A 408 ----SQENVGLDSVVEHLISQA 425 (434)
T ss_dssp ----CEEEEEGGGHHHHHHHCC
T ss_pred ----CeEEEcHHHHHHHHHHHh
Confidence 999999999999998765
No 12
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=1e-55 Score=536.87 Aligned_cols=389 Identities=20% Similarity=0.308 Sum_probs=303.5
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCCe
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPK 915 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P~ 915 (1250)
+.++++++++|+. .|++|..++.+.+.+.. ....++||+|.|+ +|+.++||||+|+|+||+++++.. .|+
T Consensus 36 ~~~~~~~~~~Gy~-eI~tP~le~~el~~~~~-----g~~~~~~y~f~D~-~g~~l~LRPd~T~~~aR~~~~~~~---~p~ 105 (464)
T 4g84_A 36 DVIIRCFKRHGAE-VIDTPVFELKETLMGKY-----GEDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNKL---TNI 105 (464)
T ss_dssp HHHHHHHHHTTCE-ECBCCSEEEHHHHTTSC-----C----CCCBBCCC-SSCCEEECSCSHHHHHHHHHHTTC---SCE
T ss_pred HHHHHHHHHCCCe-EEECcccCcHHHhcccc-----CcCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhcCC---CCc
Confidence 3577888899999 89999999999875321 1234789999999 999999999999999999998654 799
Q ss_pred eEEEEeceeecCCC--CCCCCCceEEeeEEEecCCC-chhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHH---
Q psy17091 916 RLWYSGPMFRHERP--QYGRYRQFYQIGVEAIGFPG-PDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYC--- 989 (1250)
Q Consensus 916 r~yy~g~VfR~e~~--~~gr~REf~Q~g~eiig~~~-~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~--- 989 (1250)
|+||+|+|||+|+| +.||+|||+|+|+|+||..+ ..+|+|+|.++.++|+.+|++++.++|||++++++++..+
T Consensus 106 k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~~~i~i~~~~~~~~~~~~~~~~ 185 (464)
T 4g84_A 106 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVS 185 (464)
T ss_dssp EEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTCCCEEEEEEEHHHHHHHHHHHTCC
T ss_pred eeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCCCCcceeecchhhHHHHHHhhcCc
Confidence 99999999999998 45799999999999999754 5689999999999999999999999999999988876543
Q ss_pred ----HHHHHHHHhccCchhhhHHHHHHhhhc-ccc-----------ccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Q psy17091 990 ----IDLINYIKKHKDSKWFCEDIKHSLYLN-SLR-----------VLDSKNLIIREILINAPKLLDYLEKDSLDHFYGI 1053 (1250)
Q Consensus 990 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~-----------~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l 1053 (1250)
..+.+.+++.... ..+.....+... .+. .+.........++...+........++++++..+
T Consensus 186 ~~~~~~~~~~l~~l~~~--~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 263 (464)
T 4g84_A 186 DSKFRTICSSVDKLDKV--SWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLL 263 (464)
T ss_dssp HHHHHHHHHHHGGGGTS--CHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESHHHHHHHTTCHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchh--hHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 2344444433221 112222111100 000 0000001111111111111222334567889999
Q ss_pred HHHHhhCCc--eEEEeCCCCCCCCCCcceEEEEEECCCCCC--------cceeecccchHHHHhcC--CCCCCeEEEEEe
Q psy17091 1054 QKILNYNNI--SYKINTKLVRGMDYYNRTVFEWTTDKLGSQ--------NSICGGGRYDFLIKKFS--NKFVPASGFAIG 1121 (1250)
Q Consensus 1054 ~~~l~~~gi--~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~--------~~i~~GGRYD~L~~~fg--~~~~pavGfsi~ 1121 (1250)
.+.++..|+ ++.+|++++||++||||++||++..+.+.. ++||+|||||+|++.|+ +++.||||||+|
T Consensus 264 ~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~GGRYD~L~~~~~~~g~~~pavGfaig 343 (464)
T 4g84_A 264 FEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIG 343 (464)
T ss_dssp HHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEEEEEEECCSTGGGTSTTCCCCCEEEEEEC
T ss_pred HhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccccCCcccceeccCCchhHHHHHhccCCCCCCCcccccc
Confidence 999999887 599999999999999999999998665542 48999999999999995 667999999999
Q ss_pred HHHHHHHHHHccC-C--CCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCE
Q psy17091 1122 IERLIELIKKINI-N--HNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANF 1198 (1250)
Q Consensus 1122 lerl~~~l~~~~~-~--~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~ 1198 (1250)
+|||+.+|.+++. + +.+..+++|+|++.+++...+|++++++||++||+|++++. ...++++++++|++.||||
T Consensus 344 ieRl~~~l~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~ 420 (464)
T 4g84_A 344 VERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPL 420 (464)
T ss_dssp HHHHHHHHHHHHHTTTCCCCSCCCCEEEECSSSSCHHHHHHHHHHHHHTTCCEECCSC---SSCCHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHhccccCcccccccceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCE
Confidence 9999999987542 2 23456789999999999999999999999999999999764 2468999999999999999
Q ss_pred EEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHH
Q psy17091 1199 AAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 1245 (1250)
Q Consensus 1199 ~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~ 1245 (1250)
+||||++|+++|+|+||||.++ +|..|+++||+++|++++.
T Consensus 421 ~viiG~~E~~~g~v~vK~l~tg------eq~~v~~~elv~~lk~~l~ 461 (464)
T 4g84_A 421 VAIIGEQELKDGVIKLRSVTSR------EEVDVRREDLVEEIKRRTG 461 (464)
T ss_dssp EEECCHHHHHHTEEEEEETTTC------CEEEEEGGGHHHHHHHHHT
T ss_pred EEEECchhhhCCEEEEEECCCC------CeEEeeHHHHHHHHHHHhc
Confidence 9999999999999999999999 9999999999999998874
No 13
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=7.4e-54 Score=513.53 Aligned_cols=390 Identities=34% Similarity=0.584 Sum_probs=312.3
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC--CC
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY--DG 913 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~--~~ 913 (1250)
+.+++.+.++|+. .|.+|..+..+.+... .+.+++.+.++||+|.|+ +|+.++||||+|++++|+++++..++ ++
T Consensus 24 ~~~~~~~~~~G~~-ei~tP~l~~~~l~~~~-~g~~~~~~~~~m~~~~D~-~g~~~~Lrp~~t~~~~r~~~~~~~~~~~~l 100 (420)
T 1qe0_A 24 NQLDELMTFYNYK-EIRTPIFESTDLFARG-VGDSTDVVQKEMYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQGNPNQ 100 (420)
T ss_dssp HHHHHHHHHHTCE-ECBCCSEEEHHHHCC------------CCEEECHH-HHCCEEECSCSHHHHHHHHHHTTGGGCSSC
T ss_pred HHHHHHHHHcCCE-EccCcccchHHHhhhc-cCCccchhhhheEEEEcC-CCCEEEeCCCChHHHHHHHHhccccccCCC
Confidence 3577788899999 8999999999988632 236677788999999999 89999999999999999999876553 78
Q ss_pred CeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHH
Q psy17091 914 PKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLI 993 (1250)
Q Consensus 914 P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~ 993 (1250)
|+|+||+|+|||+|+|+.||.|||+|+|+|+||.++..+|+|++.++.++|+.+|++++.+++||.+..+....+...+.
T Consensus 101 P~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lgl~~~~i~l~~~g~~~~~~~~~~~l~ 180 (420)
T 1qe0_A 101 PIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALV 180 (420)
T ss_dssp SEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCHHHHHHHHHHHH
T ss_pred CeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcCCCceEEEEcccCchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999889999999998776655555555
Q ss_pred HHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCC
Q psy17091 994 NYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRG 1073 (1250)
Q Consensus 994 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~ 1073 (1250)
+++..... .+++.+...+..++++.++.......+++..++.+.+.+..++++++..+.+.++..|+.+.+|++++|+
T Consensus 181 ~~~~~~~~--~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~~~~l~~l~~~l~~~gi~~~~d~~l~rg 258 (420)
T 1qe0_A 181 KHFEPVIH--EFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGIPYTEDPNLVRG 258 (420)
T ss_dssp HHHGGGGG--GSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTHHHHHHHHHHHHHHHTCCCEECTTCCCC
T ss_pred HHHHHHHh--hhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHHHHHHHHHHHHHHHcCCeEEECcccccc
Confidence 66654321 1445555555444555555443333455555555555445567778888888888889999999999999
Q ss_pred CCCCcceEEEEEECCC---CCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHcc-CCCCCCCCceEEEEEc
Q psy17091 1074 MDYYNRTVFEWTTDKL---GSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKIN-INHNFSHQCDIYIVHV 1149 (1250)
Q Consensus 1074 ~~YYtG~vFe~~~~~~---~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~-~~~~~~~~~~v~V~~~ 1149 (1250)
++||||++|+++.+.. +...+|++|||||+|++.||++..|++||++++|||+.++.+.+ .||. .+|++|+|++.
T Consensus 259 ~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~~P~vg~~igveRl~~~le~~~~~~p~-~~p~~v~i~~~ 337 (420)
T 1qe0_A 259 LDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDI-EENLDLFIVTM 337 (420)
T ss_dssp CTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTCCCCEEEEEEEEHHHHHHHHHHTTCCCCC-CCCCSEEEEEC
T ss_pred hhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCCCCCCEEEEEecHHHHHHHHHhcCCCCCC-CCCCeEEEEEe
Confidence 9999999999998866 65579999999999999999888999999999999999996555 4665 78899999999
Q ss_pred ChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcce
Q psy17091 1150 GKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQI 1229 (1250)
Q Consensus 1150 ~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~ 1229 (1250)
+++...+|.+++++||++|++|+++++ +.++++++++|++.|+||+|+||++|+++|+|+||++.++ ++.
T Consensus 338 ~~~~~~~a~~l~~~Lr~~Gi~v~~d~~----~~~~~~~~~~a~~~g~p~~iiig~~e~~~~~v~vk~~~~~------~~~ 407 (420)
T 1qe0_A 338 GDQADRYAVKLLNHLRHNGIKADKDYL----QRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTG------ESE 407 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEECCS----CCCHHHHHHHHHHTTCSEEEEECHHHHHHTCEEEEETTTC------CEE
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEecC----CCCHHHHHHHHHHcCCCEEEEECcchhhcCeEEEEECCCC------CeE
Confidence 888888999999999999999999876 5799999999999999999999999999999999999999 999
Q ss_pred eeehHHHHHHHH
Q psy17091 1230 SISFKDAENYFY 1241 (1250)
Q Consensus 1230 ~v~~~el~~~l~ 1241 (1250)
.|++++++++|+
T Consensus 408 ~v~~~~l~~~l~ 419 (420)
T 1qe0_A 408 TIELDALVEYFK 419 (420)
T ss_dssp EECTTHHHHHHH
T ss_pred EEcHHHHHHHHh
Confidence 999999999885
No 14
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=1.9e-49 Score=464.83 Aligned_cols=345 Identities=24% Similarity=0.297 Sum_probs=270.7
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCCe
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPK 915 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P~ 915 (1250)
+.++++++++|+. .|++|..+..+.+... .+...++||+|.|+ +|+.++||||+|+|+||+++++....+.|+
T Consensus 32 ~~l~~~~~~~Gy~-eI~tP~lE~~el~~~~-----g~~~~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~ 104 (400)
T 3od1_A 32 DQMTEEINLWGYD-MIETPTLEYYETVGVV-----SAILDQQLFKLLDQ-QGNTLVLRPDMTAPIARLVASSLKDRAYPL 104 (400)
T ss_dssp HHHHHHHHHTTCE-ECBCCSEEETTTHHHH-----SSSCGGGSCEEECT-TSCEEEECSCSHHHHHHHHHHHCSSSCSCE
T ss_pred HHHHHHHHHcCCE-EEeCCccccHHHHhhc-----CCccccceEEEECC-CCCEEEECCCCHHHHHHHHHhhcccCCCCe
Confidence 3477788899999 8999999999987522 24567899999999 999999999999999999998765557899
Q ss_pred eEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHHH------
Q psy17091 916 RLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYC------ 989 (1250)
Q Consensus 916 r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~------ 989 (1250)
|+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|++++.|+|||+++++++++.+
T Consensus 105 r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~~~~i~l~~~~i~~~ll~~~~~~~~~ 184 (400)
T 3od1_A 105 RLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLSEFKVAIGHVGYVNALLMDVVGNEQR 184 (400)
T ss_dssp EEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCCSEEEEEEEHHHHHHHHHHHHCCHHH
T ss_pred EEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCCceEEEecCHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776443
Q ss_pred -HHHHHHHHhccCch--------hhhHHHHHHhhhccccccccccHHHHHHHhhhhhHH-HHHHHhHHHHHHHHHHHHhh
Q psy17091 990 -IDLINYIKKHKDSK--------WFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLL-DYLEKDSLDHFYGIQKILNY 1059 (1250)
Q Consensus 990 -~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~l~~~l~~ 1059 (1250)
..+.+++++..... .+++++...+...+. +... .++++.++.+. +....+++++|.++.+.|+.
T Consensus 185 ~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~--~~g~----~~~l~~~~~l~~~~~~~~~l~~l~~l~~~L~~ 258 (400)
T 3od1_A 185 ADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLMNLLS--LRGG----RAAIEEARGLIQTEKGKTALAEMTKLYEVLES 258 (400)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSSSCHHHHHHHHHGGG--CEES----HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChhHHHHHHHhcCCCHHHHHHHHHHHh--ccCC----HHHHHHHHhhhcChhhHHHHHHHHHHHHHHHH
Confidence 45666665542110 022222222221111 1110 12344444443 24556789999999999999
Q ss_pred CCce--EEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccCCCC
Q psy17091 1060 NNIS--YKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININHN 1137 (1250)
Q Consensus 1060 ~gi~--i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~~~~ 1137 (1250)
.|+. +.+||+++||++||||+|||+|.++.+ .+||+|||||+|++.||++ .||||||+++|||+.+|.+.+..+.
T Consensus 259 ~gi~~~~~~D~~lvRgldYYTG~vFe~~~~~~g--~~i~~GGRYD~L~~~fG~~-~pavGfaiglerL~~~l~~~~~~~~ 335 (400)
T 3od1_A 259 YGASEYVKFDLTLVLHMSYYTGVVFEGYGNRLG--VPLCSGGRYDELLSKFHRP-AQATGFGVRIDLLVEALNGEIISNG 335 (400)
T ss_dssp TTCGGGEEEETTCCSCSSSCCSEEEEEEETTCS--SEEEEEEECTTHHHHTTCC-CCEEEEEEEHHHHHHHHCC------
T ss_pred cCCCceEEEeCCccCCCcccCCeEEEEEECCCC--CeeecccccchhhhccCCC-CCEEEEEeeHHHHHHHHHhcCCCCC
Confidence 9986 999999999999999999999998765 4999999999999999986 9999999999999999876553321
Q ss_pred CCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcc
Q psy17091 1138 FSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEI 1207 (1250)
Q Consensus 1138 ~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~ 1207 (1250)
..+++|+ .+++...++++++++||++|++|+++.. +. .... +|...|+.+++++.+++-
T Consensus 336 ---~~~v~v~-~~~~~~~~a~~~a~~LR~~G~~v~~~~~----~~-~~~~--~~~~~~~~~~~~~~~~~~ 394 (400)
T 3od1_A 336 ---HEQTCIL-FSNERRFEAIELARKKRANGEAVVLQDL----AG-VTDV--DAMSSNYQDVIYCIGTAG 394 (400)
T ss_dssp ---CCCEEEE-ECGGGHHHHHHHHHHHHTTTCCEEEEEG----GG-CSCH--HHHHTTSSEEEEECSCC-
T ss_pred ---CCeEEEE-ECcHHHHHHHHHHHHHHHCCCEEEEEec----CC-hhHH--HHHHcCCCEEEEEecCCC
Confidence 2346654 7777788999999999999999999876 21 1212 999999999999988764
No 15
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=1.5e-43 Score=411.11 Aligned_cols=286 Identities=18% Similarity=0.250 Sum_probs=222.8
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccc-cceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCC
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVK-KEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGP 914 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~-~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P 914 (1250)
+.++++++++|+. .|++|..+..+.+.. + .+... ++||+|.|+ +|+.++||||+|+|+||+++++..+.+.|
T Consensus 45 ~~i~~~f~~~Gy~-eI~tP~le~~el~~~---~--g~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P 117 (373)
T 3rac_A 45 TRLLSFVEDAGYE-PVTSGLFEYVDTLLR---A--RSPESSRDWIRLFDG-GGDAVALRPEMTPSIARMAAPRVAAGRTP 117 (373)
T ss_dssp HHHHHHHHHTTCE-ECCCCSEEEHHHHHT---T--SCTTSCCCCCBCCCC-SSSCEEECSSSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCe-EEECCceeeHHHHhh---c--CCccchhceEEEECC-CCCEEEECCcCHHHHHHHHHhccccCCCC
Confidence 3477788899999 899999999999862 2 24456 899999999 99999999999999999999876555789
Q ss_pred eeEEEEeceeecCCC------CCCCCCceEEeeEEEecCC-CchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHH
Q psy17091 915 KRLWYSGPMFRHERP------QYGRYRQFYQIGVEAIGFP-GPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKK 987 (1250)
Q Consensus 915 ~r~yy~g~VfR~e~~------~~gr~REf~Q~g~eiig~~-~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~ 987 (1250)
+|+||+|+|||+|++ +.||+|||+|+|+|+||.+ ++.+|+|+|.++.++|+.+|++++.|+|||+++++++++
T Consensus 118 ~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~lgl~~~~i~l~~~~i~~~ll~ 197 (373)
T 3rac_A 118 IRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVRHHRIVVSHARLVPRLLD 197 (373)
T ss_dssp CEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCCSCEEEEEETTHHHHHHH
T ss_pred eEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCHHHHHHHHH
Confidence 999999999999999 8899999999999999998 899999999999999999999999999999999987764
Q ss_pred H-------HHHHHHHHHhccCchhhhHHHHHHh-------hhccccccc-------cccHHHHHHHhhhhhHHH-HHH--
Q psy17091 988 Y-------CIDLINYIKKHKDSKWFCEDIKHSL-------YLNSLRVLD-------SKNLIIREILINAPKLLD-YLE-- 1043 (1250)
Q Consensus 988 ~-------~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~l~~l~-------~~~~~~~~~~~~~~~~~~-~l~-- 1043 (1250)
. ...+.+++++.... ..+.....+ ..+.+++.. ++.....++++.++.+.. ...
T Consensus 198 ~~g~~~~~~~~l~~~l~k~~~~--~~~~~~~~l~~~~~~~l~~l~~l~g~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ 275 (373)
T 3rac_A 198 ALGISASLSRAFLACLTSGNYV--QFRELWQLHAAKDVDLLANLLTWSPAERDAAKRSREASDRELEALLRDAVDPRAAA 275 (373)
T ss_dssp HTTCCHHHHHHHHHHHHHTCHH--HHHHHHHHHCSCCSCHHHHHHHBCCCSSCTTSBCHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HcCCCHHHHHHHHHHHHhcChh--hHHHHHHhcCHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHhhhcCcccch
Confidence 3 34566666554321 011111111 011112222 111223344444444332 222
Q ss_pred --HhHHHHHHHHHHHHhhCCc---eEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEE
Q psy17091 1044 --KDSLDHFYGIQKILNYNNI---SYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGF 1118 (1250)
Q Consensus 1044 --~~~~~~l~~l~~~l~~~gi---~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGf 1118 (1250)
.+++++|+.+.+.|+..|+ .+.|||+++||++||||+|||+|.++.+ .+||+|||||+|++.||++ .|||||
T Consensus 276 ~~~~al~~l~~l~~~L~~~gi~~~~i~~D~~lvRgldYYTG~vFe~~~~~~g--~~i~~GGRYD~L~~~fG~~-~pAvGF 352 (373)
T 3rac_A 276 DVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDYYTGLVFEMFAPGVG--APIAQGGRYDELLAQFGAG-APAVGF 352 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTTEEECTTCCCSCTTCCSEEEEEECTTCS--SCSEEEEECTTTTGGGTCC-CCCEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCceEEEeCCccCCCCccCCeEEEEEECCCC--CeEeecccccHHHHhhCCC-CCeEEE
Confidence 5678999999999999998 7999999999999999999999998765 4999999999999999975 999999
Q ss_pred EEeHHHHHHHHHHcc
Q psy17091 1119 AIGIERLIELIKKIN 1133 (1250)
Q Consensus 1119 si~lerl~~~l~~~~ 1133 (1250)
|+++|||+.+|.+++
T Consensus 353 aiglerL~~~l~~~~ 367 (373)
T 3rac_A 353 AFEVERVMAVLEAQE 367 (373)
T ss_dssp EEEHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHHhcc
Confidence 999999999998754
No 16
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=100.00 E-value=1.4e-43 Score=407.81 Aligned_cols=283 Identities=20% Similarity=0.292 Sum_probs=219.0
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCCCCe
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPK 915 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~P~ 915 (1250)
+.++++++++|+. .|++|..+..+.+...+ +++++...++||+|.|+ +|+.++||||+|+|+||+++++ ..+.|+
T Consensus 44 ~~i~~~~~~~Gy~-eI~tP~le~~el~~~s~-~g~~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~--~~~~P~ 118 (344)
T 1z7m_A 44 GRLRKLFSLKNYQ-EVMPPSFEYTQLYTALE-SNGKTFNQEKMFQFIKH-EGQSITLRYDFTLPLVRLYSQI--KDSTSA 118 (344)
T ss_dssp HHHHHHHHHTTCE-ECCCCSEEEHHHHHHHH-CSSSCCCTTSCCEEECT-TCCEEEECCCSHHHHHHHHHTC--CSCCCE
T ss_pred HHHHHHHHHcCCE-EecCcccCcHHHHhhcc-CCccccccccEEEEECC-CCCEEecCCCCcHHHHHHHHhc--CCCCCe
Confidence 3477888899999 89999999999886322 24556678899999999 9999999999999999999987 346899
Q ss_pred eEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHH----HHH
Q psy17091 916 RLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKY----CID 991 (1250)
Q Consensus 916 r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~----~~~ 991 (1250)
|+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|++++.|+|||+++++.++.. ...
T Consensus 119 rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~lgl~~~~i~l~~~gi~~~~lg~~~~~~~~ 198 (344)
T 1z7m_A 119 RYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGLNKTVFEIGSAKFFQRLCQLADGSTEL 198 (344)
T ss_dssp EEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEEHHHHHHHHHHTTTCHHH
T ss_pred EEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCCcEEEEECCHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998899999999988876522 234
Q ss_pred HHHHHHhccCch--------hhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHH-HHHHhHHHHHHHHHHHHhhCCc
Q psy17091 992 LINYIKKHKDSK--------WFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLD-YLEKDSLDHFYGIQKILNYNNI 1062 (1250)
Q Consensus 992 ~~~~l~~~~~~~--------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~l~~~l~~~gi 1062 (1250)
+.+++++..... .+++.....+. . +++. .. .++++.++.+.+ ....+++++|+++.+.|+..|
T Consensus 199 l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~-~---l~~~-g~--~~~l~~~~~l~~~~~~~~~l~~l~~l~~~L~~~g- 270 (344)
T 1z7m_A 199 LTELLLKKDLSGLNAFIEKNNFSKELRGLLK-E---IFIT-NE--LSRLENLVTNTKDDVLISSFDQLKEFSEKLSMIK- 270 (344)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCCHHHHHHHH-H---HTTC-CC--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHhhCHHHHHHHHHhcCCCHHHHHHHH-H---HHhc-CC--HHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhCC-
Confidence 455554432110 01111111110 0 0011 10 134444554443 235678899999999999999
Q ss_pred eEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHHHccC
Q psy17091 1063 SYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKINI 1134 (1250)
Q Consensus 1063 ~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~~~~~ 1134 (1250)
++.|||+++||++||||+|||+|..+.+ .+||+|||||+|++.|| ++.||||||+++|||+.++.+++.
T Consensus 271 ~~~~D~~lvrgldYYtG~vFe~~~~~~~--~~i~~GGRYD~L~~~fg-~~~pavGfaiglerl~~~l~~~~~ 339 (344)
T 1z7m_A 271 PIIIDLGMVPKMDYYTDLMFKAYSSAAN--QPILSGGRYDQLLSNFQ-EEAFAIGFCCHMDTILKALERQEL 339 (344)
T ss_dssp CCEECTTCCCSSTTCCSEEEEEEETTEE--EEEEEEEECHHHHHTSS-SCCCCEEEEEEHHHHHHHHHHHHC
T ss_pred CEEEeCCCCCCCccCCCeEEEEEECCCC--CeEeeCccHHHHHHHhC-CCCCeEEEEEEHHHHHHHHHhccc
Confidence 9999999999999999999999987544 59999999999999999 679999999999999999987654
No 17
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=1.3e-38 Score=394.92 Aligned_cols=385 Identities=12% Similarity=0.135 Sum_probs=283.3
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC-CCCe
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGPK 915 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~ 915 (1250)
.+++.+.++|+. .|.+|..+..+.+. .+++++.+.++||+|.|+ +|+.++|||+.|++++|++++...++ ++|+
T Consensus 56 ~~~~~~~~~G~~-ei~tP~l~~~~l~~---~sG~~~~~~~~m~~~~d~-~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~ 130 (572)
T 2j3l_A 56 IMREEFEKIDAV-EMLMPALLPAELWK---ESGRYETYGPNLYRLKDR-NDRDYILGPTHEETFTELIRDEINSYKRLPL 130 (572)
T ss_dssp HHHHHHHTTTCE-ECBCCSEEETHHHH---HHSHHHHSCTTSCEEECT-TCCEEEECSCCHHHHHHHHHHHCCBGGGCCE
T ss_pred HHHHHHHHcCCE-EEECCccccHHHHH---hcCCccccchheEEEecC-CCCeEEEccccHHHHHHHHHhhccChhhcCH
Confidence 467778899999 89999999999885 335678889999999998 89999999999999999999876554 7999
Q ss_pred eEEEEeceeecCCC-CCC--CCCceEEeeEEEecCCCchhchHHHH---HHHHHHHHCCCCceEEEeCCCcChhhHHHH-
Q psy17091 916 RLWYSGPMFRHERP-QYG--RYRQFYQIGVEAIGFPGPDIDAELII---MCSRLWKNLNLKNICLELNSIGNFNERKKY- 988 (1250)
Q Consensus 916 r~yy~g~VfR~e~~-~~g--r~REf~Q~g~eiig~~~~~adaEvi~---l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~- 988 (1250)
|+||+|+|||+|++ +.| |.|||+|+|+|+||.++..+|+|++. ++.++|+.||++ +.+.+++++.+.....+
T Consensus 131 r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~-~~~~~~~~g~~g~~~s~E 209 (572)
T 2j3l_A 131 NLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLE-FRAIIGDGGAMGGKDSKE 209 (572)
T ss_dssp EEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGGTCSSEEE
T ss_pred hhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEEecccccCCCcccEE
Confidence 99999999999987 567 99999999999999988889988754 788999999996 99999998766543100
Q ss_pred -----------------H-----HHHHHHHHhccCc------------h--hhhHHHHHHhhhc---------------c
Q psy17091 989 -----------------C-----IDLINYIKKHKDS------------K--WFCEDIKHSLYLN---------------S 1017 (1250)
Q Consensus 989 -----------------~-----~~~~~~l~~~~~~------------~--~~~~~~~~~~~~~---------------~ 1017 (1250)
| .++..++...... + ...+.+...+... +
T Consensus 210 ~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~l~~~lg~~~~~i~K~l~~~~~~~~ 289 (572)
T 2j3l_A 210 FMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEP 289 (572)
T ss_dssp EEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCCCCEEEECTTCCSHHHHHHHHTCCGGGBEEEEEEEETTEE
T ss_pred EEEEcCCCcceEEEeCCCCcccchhhhhcccccccccccccccceecCCCCCcHHHHHHHhCcCHHHeEEEEEEEeCCcE
Confidence 0 0000000000000 0 0000111100000 0
Q ss_pred ccccccccHHHHHHHhhhhhHHHHHH-----HhHHHHHHHHHH----HHhhC----CceEEEeCCCCC------------
Q psy17091 1018 LRVLDSKNLIIREILINAPKLLDYLE-----KDSLDHFYGIQK----ILNYN----NISYKINTKLVR------------ 1072 (1250)
Q Consensus 1018 l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~l~~l~~----~l~~~----gi~i~~D~~~~~------------ 1072 (1250)
+..+...+..+ ..+.+.+.+. ....+++..+.. .+... ++++.+|+++++
T Consensus 290 ~~vli~gd~el-----~~~kl~~~l~~~~l~~a~~~el~~~~g~~~g~~~p~gl~~~i~~~iD~sl~r~~~~~~ga~~~~ 364 (572)
T 2j3l_A 290 VMVLVRGDHDV-----NDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGPVNVSEDVKIYADLAVQDLANAIVGANEDG 364 (572)
T ss_dssp EEEEEETTCCB-----CHHHHHHHHTCSCEEECCHHHHHHHHSSCTTSCCSTTCCTTCEEEEETTTTTCCSEEEECSSTT
T ss_pred EEEEeeCcccc-----CHHHHHHhhCCCccccCCHHHHHHhhCCCccccCCccCCCCCcEEEehhhhcCCceEEccCCCC
Confidence 00000000000 0011111111 012233443332 22222 467899999998
Q ss_pred --------CCCCCcceEEEEEECCCCCCcceeecccch-----------HH----HHhc-------CCC-CCCeE-EEEE
Q psy17091 1073 --------GMDYYNRTVFEWTTDKLGSQNSICGGGRYD-----------FL----IKKF-------SNK-FVPAS-GFAI 1120 (1250)
Q Consensus 1073 --------~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD-----------~L----~~~f-------g~~-~~pav-Gfsi 1120 (1250)
|.+||++.+|++.....|...++|+ |||| .| .+.| +++ ..|++ ||+|
T Consensus 365 ~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~g-g~~~~~~~ievg~~f~Lg~~ys~~~~~~~~~~~g~~~~p~~g~~gi 443 (572)
T 2j3l_A 365 YHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGN-GVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGI 443 (572)
T ss_dssp EEEEEECBTTTBCCSEEECCBCCCTTCBCTTSS-SBEEEEEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEE
T ss_pred ceeeccccccCcCcCcHHHHHHHhcCCcccccC-CcceeccceEEEEEeccCcccccccCCEEECCCCcEEeeeeecccc
Confidence 7899999999998766666667764 7776 22 1344 343 47888 8999
Q ss_pred eHHHHHHHHHHc------cCCCCCCCCceEEEEEcC---hHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHH
Q psy17091 1121 GIERLIELIKKI------NINHNFSHQCDIYIVHVG---KEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRA 1191 (1250)
Q Consensus 1121 ~lerl~~~l~~~------~~~~~~~~~~~v~V~~~~---~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A 1191 (1250)
|+|||+.+|.++ ..||.+.+|++|+|++++ ++...+|.+++++||++|++|++|++ +.++++++++|
T Consensus 444 GveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~----~~~~g~k~~~a 519 (572)
T 2j3l_A 444 GVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDR----NERAGVKFADA 519 (572)
T ss_dssp EHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECS----SCCHHHHHHHH
T ss_pred CHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCC----CCCHhHHHHHH
Confidence 999999998875 378989999999999998 77889999999999999999999987 67999999999
Q ss_pred HHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHH
Q psy17091 1192 NASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 1245 (1250)
Q Consensus 1192 ~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~ 1245 (1250)
++.|+||+||||++| ++|+|+||+|.++ ++..|++++++++++ .+.
T Consensus 520 ~~~g~p~~iivG~~e-~~~~v~vk~~~~~------~q~~v~~~~l~~~l~-~~~ 565 (572)
T 2j3l_A 520 DLIGCPIRITVGKKA-VDGVVEVKIKRTG------EMLEVRKEELESTLS-ILM 565 (572)
T ss_dssp HHHCCSEEEEECGGG-GGTEEEEEETTTC------CEEEEEHHHHHHHHH-HHC
T ss_pred HhcCCCEEEEEcccc-cCCeEEEEEcCCC------cEEEEeHHHHHHHHH-HHh
Confidence 999999999999999 9999999999999 999999999999998 653
No 18
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=6.3e-38 Score=371.73 Aligned_cols=329 Identities=16% Similarity=0.185 Sum_probs=267.5
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC-CCCe
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGPK 915 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~ 915 (1250)
.+++.+.++|+. .|.+|..+..+.+.. +++++.+.++||+ .|+ +|+.++|||+.|++++|.++++..++ ++|+
T Consensus 39 ~~~~~~~~~G~~-ei~tP~l~~~~l~~~---sG~~~~~~~em~~-~d~-~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~ 112 (401)
T 1evl_A 39 FVRSKLKEYQYQ-EVKGPFMMDRVLWEK---TGHWDNYKDAMFT-TSS-ENREYCIKPMNCPGHVQIFNQGLKSYRDLPL 112 (401)
T ss_dssp HHHHHHHHTTCE-ECBCCSEEEHHHHHH---HTHHHHSGGGCCE-EEE-TTEEEEECSCSHHHHHHHHTSSCCBGGGCSE
T ss_pred HHHHHHHHcCCE-EEECCeeccHHHHHh---cCcHhhhchhhEe-Eec-CCceEEEcCCCCHHHHHHHHhhhhhhhhCCh
Confidence 467778899999 899999999999873 4566778899999 998 89999999999999999998875555 7899
Q ss_pred eEEEEeceeecCCC--CCC--CCCceEEeeEEEecCCCchhch---HHHHHHHHHHHHCCCCceEEEeCCCcChhhHHHH
Q psy17091 916 RLWYSGPMFRHERP--QYG--RYRQFYQIGVEAIGFPGPDIDA---ELIIMCSRLWKNLNLKNICLELNSIGNFNERKKY 988 (1250)
Q Consensus 916 r~yy~g~VfR~e~~--~~g--r~REf~Q~g~eiig~~~~~ada---Evi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~ 988 (1250)
|+||+|+|||+|.+ +.| |.|||+|+|+|+||. ...+|+ |++.++.++|+.||++++.+.+++.. +...
T Consensus 113 r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~-~~~~~~e~~e~i~~~~~~~~~lgl~~~~~~~~~~~--~~~~-- 187 (401)
T 1evl_A 113 RMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCT-EEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRP--EKRI-- 187 (401)
T ss_dssp EEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEC-GGGHHHHHHHHHHHHHHHHHTTTCSCCEEEEECCC--SSCC--
T ss_pred hhccccceecCCCCcccccccccCcEEecceEEeCC-HHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCC--cccC--
Confidence 99999999999974 778 999999999999996 566777 58999999999999988999999854 1000
Q ss_pred HHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceE----
Q psy17091 989 CIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISY---- 1064 (1250)
Q Consensus 989 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i---- 1064 (1250)
. . .. ....++ .. +.+.++..|+++
T Consensus 188 -----------~-~----~~----------------------~~~~a~-----------~~---~~~~l~~~g~~~~~~~ 215 (401)
T 1evl_A 188 -----------G-S----DE----------------------MWDRAE-----------AD---LAVALEENNIPFEYQL 215 (401)
T ss_dssp -----------S-C----HH----------------------HHHHHH-----------HH---HHHHHHHTTCCCEEET
T ss_pred -----------C-C----HH----------------------HHHHHH-----------HH---HHHHHHhcCCCceecC
Confidence 0 0 00 000000 00 111122222222
Q ss_pred --------EEeCCCCC--CCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEE-EE--eHHHHHHHHHH
Q psy17091 1065 --------KINTKLVR--GMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGF-AI--GIERLIELIKK 1131 (1250)
Q Consensus 1065 --------~~D~~~~~--~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGf-si--~lerl~~~l~~ 1131 (1250)
.+|+.+++ |.+||+|++|.-+. -+.+.|+||++ ..|+...|++|+ ++ ++||++.+|.+
T Consensus 216 ~~~~~y~~~~d~~~~~~~G~~~~~gt~~~d~~------l~~~~~~~y~~---~~g~~~~p~~~~~~~~GgieRli~~l~e 286 (401)
T 1evl_A 216 GEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFS------LPSRLSASYVG---EDNERKVPVMIHRAILGSMERFIGILTE 286 (401)
T ss_dssp TCSBTTBCEEEEEEECTTCCEEEEEEEEEESS------HHHHTTCCEEC---TTSCEECCEEEEEEEEEEHHHHHHHHHH
T ss_pred CCccccCCCcCeEEEecCCCeEEeeeeeeccc------cccccCCEEEC---CCCCCcCcEEEEecCCCcHHHHHHHHHH
Confidence 25666777 99999999983211 14567899974 346556899988 77 99999999998
Q ss_pred c--cCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccC
Q psy17091 1132 I--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIIN 1209 (1250)
Q Consensus 1132 ~--~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~ 1209 (1250)
+ +.||.+.+|++|+|++++++...+|.+++++||++|++|++|++ +.++++++++|++.|+||+||||++|+++
T Consensus 287 ~~~~~~p~~~ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~----~~~~~~k~~~A~~~g~p~~iiiG~~e~~~ 362 (401)
T 1evl_A 287 EFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLR----NEKIGFKIREHTLRRVPYMLVCGDKEVES 362 (401)
T ss_dssp HHTTCCCTTTCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECC----SSCHHHHHHHHHHTTCSEEEEECHHHHHH
T ss_pred HhCCcCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHhcCCCEEEEECcchhhC
Confidence 7 78898899999999999988999999999999999999999976 67999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHhh
Q psy17091 1210 NTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIKN 1247 (1250)
Q Consensus 1210 g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~~ 1247 (1250)
|+|+||+|.++ ++..|+++++++++++.+..+
T Consensus 363 ~~v~vk~~~~~------~q~~v~~~el~~~l~~~~~~~ 394 (401)
T 1evl_A 363 GKVAVRTRRGK------DLGSMDVNEVIEKLQQEIRSR 394 (401)
T ss_dssp TEEEEEETTSC------EEEEEEHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCC------ceEEeeHHHHHHHHHHHHhhh
Confidence 99999999999 999999999999999887543
No 19
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=100.00 E-value=4.5e-39 Score=359.44 Aligned_cols=255 Identities=18% Similarity=0.234 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCC
Q psy17091 833 SRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYD 912 (1250)
Q Consensus 833 e~i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~ 912 (1250)
+...+++++++++||. .|++|..++.+.+.. + +|.|+ +|+.++||||+|+|+| +++....+
T Consensus 7 e~~~r~~~~~~~~Gy~-eI~tP~le~~~l~~~------------d--~f~d~-~g~~l~LRpd~T~~~a---~~~~~~~~ 67 (275)
T 1usy_A 7 EKVFSFYSKATKKGFS-PFFVPALEKAEEPAG------------N--FFLDR-KGNLFSIREDFTKTVL---NHRKRYSP 67 (275)
T ss_dssp HHHHHHHHHHHHTTCE-ECCCCSEEECSSCCS------------S--CEEET-TSCEEEECCCHHHHHH---HHHTTCTT
T ss_pred HHHHHHHHHHHHCCCE-EecCccccchhhhcc------------c--ccCCC-CCCEEEeCCcChHHHH---HHHhhcCC
Confidence 3444566899999999 899999999987642 1 56798 9999999999999999 44433336
Q ss_pred -CCeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEEeCCCcChhhHHH----
Q psy17091 913 -GPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKK---- 987 (1250)
Q Consensus 913 -~P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~---- 987 (1250)
.|+|+||+|+|||+|+|+. |||+|+|+|+||.+++.+|+|+|.++.++|+.+|++++.|+|||+++++..+.
T Consensus 68 ~~p~R~~y~g~vfR~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~~~~i~l~~~~~~~~~~~~~~~ 144 (275)
T 1usy_A 68 DSQIKVWYADFVYRYSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEGPVIVEIGHTGVYEDLLKEIPK 144 (275)
T ss_dssp CCCEEEECCEEEEEEETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHCCSCEEEEEEETTHHHHHHTTSCG
T ss_pred CCceEEEEeceEEecCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcCCCCeEEEeCCHHHHHHHHHhCCH
Confidence 8999999999999999877 99999999999999999999999999999999999889999999998887652
Q ss_pred -HHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhh--hhhHHHHHH--HhHHHHHHHHHHHHh-hCC
Q psy17091 988 -YCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILIN--APKLLDYLE--KDSLDHFYGIQKILN-YNN 1061 (1250)
Q Consensus 988 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~~~~l~--~~~~~~l~~l~~~l~-~~g 1061 (1250)
...++.+++++.... .+...+...+++ ++....+.+++.. .+.+++.+. .+++++|+++.+.|+ ..|
T Consensus 145 ~~~~~l~~~l~~~~~~-----~~~~~l~~~~l~--~~~~~~l~~l~~~~g~~~~l~~l~~~~~~l~~l~~l~~~l~~~~g 217 (275)
T 1usy_A 145 DLHEKVLNLIDTKNLA-----EIEFLSHMKKID--LSRVEKIIEDSIYRRSPEHLKTMDLPLSVREDLLSASSFLQEKFP 217 (275)
T ss_dssp GGHHHHHHHHHTTCHH-----HHHHHHHHTCCC--CTHHHHHHHHHHHCCSGGGGGTSCCCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHccCHH-----HHHHHHHhcCCC--HHHHHHHHHHHHhhCCHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 234566666654322 222222222222 2333333444332 344444343 456899999999999 888
Q ss_pred -ceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHH
Q psy17091 1062 -ISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERL 1125 (1250)
Q Consensus 1062 -i~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl 1125 (1250)
+.+.+||+++||++||||+|||++.++ ...+||+|||||+| +.||||||+++||+
T Consensus 218 ~~~~~~D~~lvRgldYYtG~vFe~~~~~--~~~~i~~GGRYD~l-------~~pavGfsig~er~ 273 (275)
T 1usy_A 218 TVSVEIDLTLARTIEEYCGLIFTIYDTS--SSRLVAAGGEYTVN-------GEKGVGGSIFLEGK 273 (275)
T ss_dssp SSEEEECCCCGGGGGTCSSEEEEEEETT--TTEEEEEEEEEEET-------TEEEEEEEEEEEEE
T ss_pred CCeEEEeccccCCCCccCCeEEEEEECC--CCCeEeeecCCCCC-------CCCEEEEEEEeecc
Confidence 889999999999999999999999873 44699999999996 48999999999985
No 20
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=1.3e-39 Score=391.16 Aligned_cols=361 Identities=15% Similarity=0.150 Sum_probs=268.9
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCC---CCcHHHHHHHHHcCCCCC
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRP---EGTASVIRSVIENNLIYD 912 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRp---D~T~~iaR~~a~~~~~~~ 912 (1250)
+.+++.+.++|+. .|.+|..+..+.|.. +++++.+.++||+|.|+ +|+.++||| |+|++++|.++.++. +
T Consensus 75 ~~ir~~~~~~G~~-ei~tP~l~~~el~~~---sg~~d~~~~em~~~~d~-~~~~~~LrPt~ee~t~~i~r~~~~s~~--~ 147 (458)
T 2i4l_A 75 QIVREEQNRAGAI-ELLMPTLQLADLWRE---SGRYDAYGPEMLRIADR-HKRELLYGPTNEEMITEIFRAYIKSYK--S 147 (458)
T ss_dssp HHHHHHHHHTTCE-ECBCCSEEEHHHHHH---HTHHHHSCTTSEEEECT-TCCEEEECSCCHHHHHHHHHHHCCBGG--G
T ss_pred HHHHHHHHHcCCE-EEEcCccCcHHHHHh---cCCccccccceEEEEeC-CCCeEEECCCChHHHHHHHHHHHhhcc--c
Confidence 3467788899999 899999999999863 34577788999999999 899999999 999999999888653 7
Q ss_pred CCeeEEEEeceeecC-CCCCC--CCCceEEeeEEEecCCCchhchHHHHH---HHHHHHHCCCCceEEEeCCCcChhhHH
Q psy17091 913 GPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPDIDAELIIM---CSRLWKNLNLKNICLELNSIGNFNERK 986 (1250)
Q Consensus 913 ~P~r~yy~g~VfR~e-~~~~g--r~REf~Q~g~eiig~~~~~adaEvi~l---~~~~l~~lgl~~~~i~i~~~~i~~~~~ 986 (1250)
+|+|+||+|+|||+| +|+.| |.|||+|+|+|+||.++..+|+|++.+ +.++|+++|++ +.+.++|++.+....
T Consensus 148 lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~-~~~~~~~~g~~gg~~ 226 (458)
T 2i4l_A 148 LPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLK-AIPMRAETGPIGGDL 226 (458)
T ss_dssp CSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCC-EEEEECCCCSSCSSC
T ss_pred cCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCc-eEEEEccccccCCcc
Confidence 999999999999999 98889 999999999999999988999998755 89999999996 999999998766532
Q ss_pred HHHHHHHHHHHhccCc-hhhhHHHHHHhhhccccccccc-cHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceE
Q psy17091 987 KYCIDLINYIKKHKDS-KWFCEDIKHSLYLNSLRVLDSK-NLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISY 1064 (1250)
Q Consensus 987 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i 1064 (1250)
...- . .+.....+ ..++ .+. .......++.. ...+..++..++.+.. +..+. ++....+ |..+
T Consensus 227 s~e~--~-~l~~~ged~i~~~-~~~---~~~n~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~--~~g~~~~-----~~~~ 291 (458)
T 2i4l_A 227 SHEF--I-VLAETGESGVYID-RDV---LNLPVPDENVDYDGDLTPIIKQWTSVYA-ATEDV--HEPARYE-----SEVP 291 (458)
T ss_dssp EEEE--E-EECTTCSEEEEEE-GGG---GGCCCCCTTCCTTSCCHHHHHHHHHSCE-EETTT--CCTTHHH-----HHSC
T ss_pred chhh--h-hhhhcCcceEEec-ccc---cccCHHHHhccccHhHHHHHhcCchhhh-cChhh--ccccccc-----CCCC
Confidence 1000 0 00000000 0011 110 00111111111 0001112211110000 00000 0000000 0123
Q ss_pred EEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCC--eEEEEEeHHHHHHHHHHc-----c-CCC
Q psy17091 1065 KINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVP--ASGFAIGIERLIELIKKI-----N-INH 1136 (1250)
Q Consensus 1065 ~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~p--avGfsi~lerl~~~l~~~-----~-~~~ 1136 (1250)
.+|++++||++ +|.+|++ |...+++.||||++. +|. ..| ++||+||+||++.++.++ + .||
T Consensus 292 ~~~l~~~rgl~--~G~iFel-----g~~~s~~~g~ry~~~---~G~-~~p~~~~gfgiGveRli~al~e~~~d~~g~~~p 360 (458)
T 2i4l_A 292 EANRLNTRGIE--VGQIFYF-----GTKYSDSMKANVTGP---DGT-DAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWP 360 (458)
T ss_dssp TTTEEEEEEEE--EEEEEEE-----ETHHHHHTTCEEECT---TSC-EEECEEEEEEEEHHHHHHHHHHHSEETTEECCC
T ss_pred CcCceeeeeec--cCcEEEe-----cccccccCCcEEECC---CCC-EeceEEeeecccHHHHHHHHHHhhccccCCcCC
Confidence 35777888988 9999999 233589999999764 443 466 789999999999999886 3 789
Q ss_pred CCCCCceEEEEEcC---hHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEE
Q psy17091 1137 NFSHQCDIYIVHVG---KEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLI 1213 (1250)
Q Consensus 1137 ~~~~~~~v~V~~~~---~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~ 1213 (1250)
.+.+|++|+|++.+ ++...+|.+++++||++|++|++|++ +.++++++++|++.|+||+||||++|+++|+|+
T Consensus 361 ~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~----~~~~g~k~~~ad~~g~p~~iivG~~e~~~g~v~ 436 (458)
T 2i4l_A 361 EAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDT----DQRAGAKFATADLIGIPWQIHVGPRGLAEGKVE 436 (458)
T ss_dssp TTTCSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECS----SCCHHHHHHHHHHHTCSEEEEECHHHHTTTEEE
T ss_pred cccCCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECC----CCCHHHHHHHHHhcCCCEEEEECCchhhCCEEE
Confidence 99999999999996 66788999999999999999999987 679999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCcceeeehHHHHHHH
Q psy17091 1214 IKDLRNKYEDPTLKQISISFKDAENYF 1240 (1250)
Q Consensus 1214 vk~~~~~~~~~~~~e~~v~~~el~~~l 1240 (1250)
||+|.++ ++..|++++++++|
T Consensus 437 vr~r~~~------~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 437 LKRRSDG------ARENLALADVVARL 457 (458)
T ss_dssp EEETTTC------CEEEEETTTTTCC-
T ss_pred EEECCCC------cEEEEeHHHHHHhh
Confidence 9999999 99999999987655
No 21
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=1.2e-35 Score=371.57 Aligned_cols=339 Identities=14% Similarity=0.179 Sum_probs=266.2
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCC-cccccCCCCcHHHHHHHHHcCCCC-CCC
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNG-DNLSLRPEGTASVIRSVIENNLIY-DGP 914 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g-~~l~LRpD~T~~iaR~~a~~~~~~-~~P 914 (1250)
.+++.+.++|+. .|.+|..++.+.|.. +++++.+.++||+|.|. +| +.++||||.|++++|+++++..++ ++|
T Consensus 280 ~ir~~~~~~Gy~-eV~tP~l~~~~l~~~---sG~~d~~~~~mf~~~d~-~~~~~~~LrP~~~~~~~~~~~~~~~syr~LP 354 (645)
T 1nyr_A 280 YIVDKEVSMGYD-HVYTPVLANVDLYKT---SGHWDHYQEDMFPPMQL-DETESMVLRPMNCPHHMMIYANKPHSYRELP 354 (645)
T ss_dssp HHHHHHHHTTEE-ECBCCSEEETHHHHH---HTHHHHCTTSSCCCEEE-TTTEEEEECSSSHHHHHHHHHTSCCBGGGCC
T ss_pred HHHHHHHHcCCE-EEECCeeccHHHHhh---CCCccccccCcceeEec-CCCeEEEeCCCCCHHHHHHHHhhhhhccCCC
Confidence 467778899999 899999999999873 45888899999999998 88 999999999999999999887665 799
Q ss_pred eeEEEEeceeecCCCC--CC--CCCceEEeeEEEecCCCchhc--hHHHHHHHHHHHHCCCCceEEEeCCCcCh--hhHH
Q psy17091 915 KRLWYSGPMFRHERPQ--YG--RYRQFYQIGVEAIGFPGPDID--AELIIMCSRLWKNLNLKNICLELNSIGNF--NERK 986 (1250)
Q Consensus 915 ~r~yy~g~VfR~e~~~--~g--r~REf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~lgl~~~~i~i~~~~i~--~~~~ 986 (1250)
+|+||+|+|||+|+++ .| |.|||+|+|+|+||.++..+| +|++.++.++|+.||++++.+++|+.... +...
T Consensus 355 lrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~~~~~~l~~~~~~~~e~~~ 434 (645)
T 1nyr_A 355 IRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYF 434 (645)
T ss_dssp EEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSS
T ss_pred eEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcccchhhc
Confidence 9999999999999886 56 999999999999999998889 99999999999999998899999986421 0000
Q ss_pred HHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceEEE
Q psy17091 987 KYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKI 1066 (1250)
Q Consensus 987 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~ 1066 (1250)
. .. +.+..+ . ..+.+.+...|+...+
T Consensus 435 -------------g-----~~----------------------e~~~~~-----------~---~~l~~~l~~~g~~~~~ 460 (645)
T 1nyr_A 435 -------------D-----DD----------------------DMWNKA-----------E---NMLKEAADELGLSYEE 460 (645)
T ss_dssp -------------C-----CH----------------------HHHHHH-----------H---HHHHHHHHHHCCCCCC
T ss_pred -------------C-----Ch----------------------HHHHHH-----------H---HHHHHHHHHcCCCeEe
Confidence 0 00 000000 0 1122233334444444
Q ss_pred eCCCCCCCCCCcceEEEEEECCCCCCcce-------eecccch-HHHHhcCCCCCCeE---EEEEeHHHHHHHHHHc--c
Q psy17091 1067 NTKLVRGMDYYNRTVFEWTTDKLGSQNSI-------CGGGRYD-FLIKKFSNKFVPAS---GFAIGIERLIELIKKI--N 1133 (1250)
Q Consensus 1067 D~~~~~~~~YYtG~vFe~~~~~~~~~~~i-------~~GGRYD-~L~~~fg~~~~pav---Gfsi~lerl~~~l~~~--~ 1133 (1250)
+++. +.-|+..+.|++ .+..+....+ .-++||| ...+..|+...|++ |+++++||++.+|.++ +
T Consensus 461 ~~~~--~~~ygpki~~~~-~d~lg~~~~~gtiq~D~~l~~~~d~~Y~~~~g~~~~P~~ih~~~~GgieR~i~~liE~~~~ 537 (645)
T 1nyr_A 461 AIGE--AAFYGPKLDVQV-KTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKG 537 (645)
T ss_dssp EESC--SBTTBCEEEEEE-CCTTSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTT
T ss_pred cCCC--CceeCCccceeh-hhhhCchhhcceEEeecccccccceEEECCCCCccCcEEEEeccCCcHHHHHHHHHHHhcC
Confidence 4432 222333333332 1111111011 1146666 34444555568888 9999999999988775 6
Q ss_pred CCCCCCCCceEEEEEcC-hHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeE
Q psy17091 1134 INHNFSHQCDIYIVHVG-KEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTL 1212 (1250)
Q Consensus 1134 ~~~~~~~~~~v~V~~~~-~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v 1212 (1250)
.||.|.+|.+|+|++++ ++...+|.+++++||++|++|++|++ ++++++++++|++.|+||++|||++|+++|+|
T Consensus 538 ~~P~~lap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~----~~~~g~k~~~a~~~g~p~~iivG~~e~~~~~V 613 (645)
T 1nyr_A 538 AFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDR----NEKMGYKIREAQMQKIPYQIVVGDKEVENNQV 613 (645)
T ss_dssp CCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCS----SCCHHHHHHHHHHHTCSEEEEECHHHHHTTEE
T ss_pred CCCCCCCCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECC----CCCHHHHHHHHHhcCCCEEEEEccchhhCCEE
Confidence 89999999999999999 88899999999999999999999987 67999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHhh
Q psy17091 1213 IIKDLRNKYEDPTLKQISISFKDAENYFYKKIIKN 1247 (1250)
Q Consensus 1213 ~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~~ 1247 (1250)
+||+|.++ ++..|+++++++.|++.+..+
T Consensus 614 ~vr~r~~~------~~~~v~~~e~~~~l~~~~~~~ 642 (645)
T 1nyr_A 614 NVRQYGSQ------DQETVEKDEFIWNLVDEIRLK 642 (645)
T ss_dssp EEEETTSS------CCCEEEHHHHHHHHHHHHHTT
T ss_pred EEEECCCC------cEEEEEHHHHHHHHHHHHhhh
Confidence 99999999 999999999999999888644
No 22
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=2.7e-34 Score=356.82 Aligned_cols=346 Identities=16% Similarity=0.210 Sum_probs=265.5
Q ss_pred CCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcH
Q psy17091 824 NSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTA 898 (1250)
Q Consensus 824 ~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~ 898 (1250)
+..+..|....+ +.+++.+.++|+. .|.+|...+.+.+- ++++++.+.++||. .|. +|+.++|||+.|+
T Consensus 262 G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~-ev~tP~l~~~~l~~---~sGh~~~~~~~my~-~d~-~~~~~~LrP~~~~ 335 (642)
T 1qf6_A 262 GMVFWHNDGWTIFRELEVFVRSKLKEYQYQ-EVKGPFMMDRVLWE---KTGHWDNYKDAMFT-TSS-ENREYCIKPMNCP 335 (642)
T ss_dssp TCCEECHHHHHHHHHHHHHHHHHHHHTTCE-ECCCCSEEETHHHH---HHSHHHHHGGGCEE-EEE-TTEEEEECSSSHH
T ss_pred CcEEECCcHHHHHHHHHHHHHHHHHHcCCE-EEECCcCccHHHHh---hcCcccccccccee-eec-CCceEEecCCCCH
Confidence 344445554333 3467777899999 89999999999986 35677888999999 998 8999999999999
Q ss_pred HHHHHHHHcCCCC-CCCeeEEEEeceeecCCC--CCC--CCCceEEeeEEEecCCCchhchH---HHHHHHHHHHHCCCC
Q psy17091 899 SVIRSVIENNLIY-DGPKRLWYSGPMFRHERP--QYG--RYRQFYQIGVEAIGFPGPDIDAE---LIIMCSRLWKNLNLK 970 (1250)
Q Consensus 899 ~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~--~~g--r~REf~Q~g~eiig~~~~~adaE---vi~l~~~~l~~lgl~ 970 (1250)
+++|++++...++ ++|+|+||+|+|||+|.+ +.| |.|||+|+|+|+||.+ ..+++| ++.++.++|+.||++
T Consensus 336 ~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~~e~~~~i~~~~~i~~~lGl~ 414 (642)
T 1qf6_A 336 GHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE-EQIRDEVNGCIRLVYDMYSTFGFE 414 (642)
T ss_dssp HHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECG-GGHHHHHHHHHHHHHHHHGGGTCC
T ss_pred HHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999876555 799999999999999987 668 9999999999999964 466777 588999999999998
Q ss_pred ceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHH
Q psy17091 971 NICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHF 1050 (1250)
Q Consensus 971 ~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 1050 (1250)
++.+.+++.. +. .... . +....+.
T Consensus 415 ~~~v~l~~~~--e~--------------~~g~----~----------------------e~w~~a~-------------- 438 (642)
T 1qf6_A 415 KIVVKLSTRP--EK--------------RIGS----D----------------------EMWDRAE-------------- 438 (642)
T ss_dssp CCEEEEECCC--SS--------------CCSC----H----------------------HHHHHHH--------------
T ss_pred ceEEEEecCc--cc--------------ccCC----H----------------------HHHHHHH--------------
Confidence 8999999854 00 0000 0 0000000
Q ss_pred HHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEEC-CCCCCcceee--------cccchHH-HHhcCCCCCCeEEE-E
Q psy17091 1051 YGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTD-KLGSQNSICG--------GGRYDFL-IKKFSNKFVPASGF-A 1119 (1250)
Q Consensus 1051 ~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~-~~~~~~~i~~--------GGRYD~L-~~~fg~~~~pavGf-s 1119 (1250)
..+.+.++..|+++.++++ ..+||+ ..|++... ..|. .-.++ ++|||.. ....|.+..|++|+ +
T Consensus 439 ~~l~~~l~~~g~~~~~~~g---~~afyg-pk~d~~~~d~~G~-~~~~gti~~df~l~~r~~~~y~~~~g~~~~P~~~hra 513 (642)
T 1qf6_A 439 ADLAVALEENNIPFEYQLG---EGAFYG-PKIEFTLYDCLDR-AWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRA 513 (642)
T ss_dssp HHHHHHHHTTTCCCEEETT---CSCTTC-CEEEEEEECTTCC-EEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEE
T ss_pred HHHHHHHHHcCCCcEEcCC---Cccccc-CcccEEEEccCCc-eEEeeeEEEeccCCccCCCEEEecCCCCcCcEEEEec
Confidence 0122334455666556654 224442 23343221 1111 00111 3444422 23445556898876 6
Q ss_pred E--eHHHHHHHHHHc--cCCCCCCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcC
Q psy17091 1120 I--GIERLIELIKKI--NINHNFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASN 1195 (1250)
Q Consensus 1120 i--~lerl~~~l~~~--~~~~~~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~g 1195 (1250)
+ ++||++.+|.++ +.||.|.+|.+|+|++++++...+|.+++++||++|++|++|++ ++++++++++|++.|
T Consensus 514 i~G~ieR~i~~liE~~~~~~P~~laP~qv~vipi~~~~~~~a~~v~~~L~~~Gi~v~~D~~----~~~~g~kir~a~~~g 589 (642)
T 1qf6_A 514 ILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLR----NEKIGFKIREHTLRR 589 (642)
T ss_dssp EEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEEEECC----SSCHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHhcCCCCcccCCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEECC----CCCHHHHHHHHHHcC
Confidence 5 999999999885 68999999999999999999999999999999999999999987 689999999999999
Q ss_pred CCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHHhh
Q psy17091 1196 ANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKIIKN 1247 (1250)
Q Consensus 1196 ip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~~~ 1247 (1250)
+||+||||++|+++|+|+||+|.++ ++..|+++++++.|++.+..+
T Consensus 590 ~p~~ivvG~~E~~~~~V~vr~r~~~------~~~~v~~~e~~~~l~~~~~~~ 635 (642)
T 1qf6_A 590 VPYMLVCGDKEVESGKVAVRTRRGK------DLGSMDVNEVIEKLQQEIRSR 635 (642)
T ss_dssp CSEEEEECTTTGGGCCEEEEESSSC------EEEEECHHHHHHHHHHHHHTT
T ss_pred CCEEEEECchhhhcCeEEEEECCCC------ceEEEEHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999 999999999999999888643
No 23
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=4.7e-36 Score=361.47 Aligned_cols=346 Identities=15% Similarity=0.126 Sum_probs=254.3
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC----C
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY----D 912 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~----~ 912 (1250)
.+++.+.++|+. .|.+|..+..+.+.. +.+++.+.++||+| |+ +|+.++||||.|++++|+++.+..++ +
T Consensus 58 ~~~~~~~~~G~~-ei~tP~l~~~~l~~~---sg~~~~~~~emy~~-d~-~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~ 131 (471)
T 3a32_A 58 VLAKFHARRGYY-VVETPIIASTELFKV---SGHIEFYRNNMYLF-DI-EGHEFAVKPMNCPYHILLFLNEVAKHRSKLP 131 (471)
T ss_dssp HHHHHHHHTTCE-ECCCCSEEETHHHHH---TCCCTTGGGGSEEE-EE-TTEEEEECSCSHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCE-EEECCeeeehHHhhh---ccCccccccceEEE-ec-CCcEEEEccccHHHHHHHHHhhhhhcccccc
Confidence 366677889999 899999999999863 34777788999999 98 89999999999999999999874444 6
Q ss_pred CCeeEEEEeceeecCCCC--CC--CCCceEEeeEEEecCCCchhc--hHHHHHHHHHHHH-CCC----CceEEEeCCCc-
Q psy17091 913 GPKRLWYSGPMFRHERPQ--YG--RYRQFYQIGVEAIGFPGPDID--AELIIMCSRLWKN-LNL----KNICLELNSIG- 980 (1250)
Q Consensus 913 ~P~r~yy~g~VfR~e~~~--~g--r~REf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~-lgl----~~~~i~i~~~~- 980 (1250)
+|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.++..+| +|++.++.++|+. ||+ +++.+.+||..
T Consensus 132 lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~ 211 (471)
T 3a32_A 132 LPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDK 211 (471)
T ss_dssp SSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCG
T ss_pred CCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCC
Confidence 999999999999999888 88 999999999999999888888 9999999999999 999 78999999985
Q ss_pred -Ch-hhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHH-h-HHHHHHHHHHH
Q psy17091 981 -NF-NERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEK-D-SLDHFYGIQKI 1056 (1250)
Q Consensus 981 -i~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~l~~l~~~ 1056 (1250)
++ +....+... +++.. ..+++.+...+..+.+. .........+. .+.....+.. + ++.++
T Consensus 212 ~~~~e~~~g~~~~----~d~~~--~~l~~~~~~~l~~~~~~--~~~~~~~~~~~--gp~i~~~l~d~~~~l~~~------ 275 (471)
T 3a32_A 212 SLIGKEFMGSKEE----WEGAE--EALREAASRINEKYGID--IVELEGEAAFY--GPKLDFIMMVEESGVSKE------ 275 (471)
T ss_dssp GGBTTTBCSCHHH----HHHHH--HHHHHHHHHHHHHHCCE--EEEETTCSBTT--BCEEEEEEEEESSSCEEE------
T ss_pred CcccccccCCHHH----HHHHH--HHHHHHHHHHHHhcCCc--eEecccchhhC--CCccceEEeccHHhhhhh------
Confidence 22 322111000 00000 00112221111111111 00000000000 0000000000 0 00000
Q ss_pred HhhCCceEEEeCCCCCCCC--CCc----ceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeEEEEEeHHHHHHHHH
Q psy17091 1057 LNYNNISYKINTKLVRGMD--YYN----RTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELIK 1130 (1250)
Q Consensus 1057 l~~~gi~i~~D~~~~~~~~--YYt----G~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pavGfsi~lerl~~~l~ 1130 (1250)
...| .+.+|++++++++ ||| |.+ +.+.- + .+++ .|+||++.++.
T Consensus 276 -~~~g-~~~lD~~l~r~~d~~Yyt~~~~G~~-e~~~i--~--~~i~-----------------------GgieRli~~li 325 (471)
T 3a32_A 276 -WQMG-TIQFDFNLPRRFRLYDVVREEFGIE-EVYII--H--RALL-----------------------GSIERFLGVYL 325 (471)
T ss_dssp -EEEE-EEEEESSHHHHTTHHHHHHHHHCCS-CEEEE--E--EEEE-----------------------EEHHHHHHHHH
T ss_pred -heee-eEEecccccccCCceEeccccCCce-eeEEE--e--cccc-----------------------CcHHHHHHHHH
Confidence 0123 5889999999999 999 987 66442 1 1222 18999997666
Q ss_pred Hc--cCCCCCCCCceEEEEEcC------hHHHHHHHHHHHHHHHcCCEEEEee-ccccccccHHHHHHHHH-HcCCCEEE
Q psy17091 1131 KI--NINHNFSHQCDIYIVHVG------KEAELKAFVLSENLRTLGLKVILNC-VFNNIHESFKSQMKRAN-ASNANFAA 1200 (1250)
Q Consensus 1131 ~~--~~~~~~~~~~~v~V~~~~------~~~~~~a~~~a~~Lr~~gi~v~~~~-~~~~~~~s~~~~~~~A~-~~gip~~v 1200 (1250)
++ +.||.+.+|.+|+|++++ ++...+|.+++++||++|++|++|+ + +.++++++++|+ +.|+||+|
T Consensus 326 e~~~g~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~----~~~~g~k~~~a~~~~gip~~i 401 (471)
T 3a32_A 326 EHRRGRMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSS----KTGLSSDVRHIESTAKPAVNV 401 (471)
T ss_dssp HHTTTCCCGGGCSCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEE----TTTHHHHHHHHHHTTCCSEEE
T ss_pred HHhCCCCCCCcCCceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCC----CCCHHHHHHHHHHhcCCCEEE
Confidence 64 468888899999999997 6678899999999999999999998 6 579999999999 99999999
Q ss_pred EEccCcccCCeEEEEEcCCCCCCCCCc--ceeeehH-----HHHHHHHHHH
Q psy17091 1201 IIGENEIINNTLIIKDLRNKYEDPTLK--QISISFK-----DAENYFYKKI 1244 (1250)
Q Consensus 1201 iig~~e~~~g~v~vk~~~~~~~~~~~~--e~~v~~~-----el~~~l~~~i 1244 (1250)
+||++|+++|+|+||+|+++ + +..|+++ ++++.+.+.+
T Consensus 402 iiG~~e~~~~~V~vr~r~~~------~q~~~~v~~~~~~~~~~~~~~~~~~ 446 (471)
T 3a32_A 402 FIGAKEVREKVLDVRVFDLE------SMKRRRLAIAYGDAADAVENLAAVA 446 (471)
T ss_dssp EECHHHHHHTEEEEEEEETT------TTEEEEEEEECSSHHHHHHHHHHHH
T ss_pred EECchhhhCCEEEEEECCCC------ccceEEEeecccchhHHHHHHHHHH
Confidence 99999999999999999998 5 6889888 7777776655
No 24
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=1.7e-33 Score=335.16 Aligned_cols=368 Identities=15% Similarity=0.166 Sum_probs=274.8
Q ss_pred CCCCHHHHHHHHHHhhcCCCccceeEeeeccCC-CCCCCCCCCcHHHH-----HHHHHHH-HhCCCeEEEeccCccchHH
Q psy17091 789 INDTDIHAIELISLMRKNKILTSCKINLIPFNC-FPNSNLICSKNSRI-----KIFAKIL-MNSGIFVTIRKIRGNDINA 861 (1250)
Q Consensus 789 ~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~-~~~~~~~~p~~e~i-----~~f~~iL-~~~G~~~~ir~~~g~~i~~ 861 (1250)
.++.+.|=++|++-+.- +-|++ ..+..+-.|....+ +.+++.+ +++|+. .|++|...+.+.
T Consensus 30 ~~~~~rdH~~lg~~l~l-----------~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~-ev~tP~l~~~~l 97 (460)
T 3uh0_A 30 SATPATMTSMVSQRQDL-----------FMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFN-EVVTPLIYKKTL 97 (460)
T ss_dssp CCCHHHHHHHHHHHHTC-----------EECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCE-ECCCCSEEEHHH
T ss_pred CCCCCCCHHHHHHhCCC-----------ceeccCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCE-EEECCeeccHHH
Confidence 44556677777776543 22333 23444445554333 3467778 889999 899999999999
Q ss_pred hhhhcCCccccccccceeeecccc-CCcccccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCCC--CC--CCC
Q psy17091 862 ACGQLSGEETDIVKKEMYSFIDEL-NGDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQ--YG--RYR 935 (1250)
Q Consensus 862 acgql~~~~~~~~~~~~~~~~D~~-~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~--~g--r~R 935 (1250)
+.+ +++++.+.++||.|.|.. .|+.++|||+.|++++++++....++ ++|+|+||+|+|||+|.++ .| |.|
T Consensus 98 ~~~---sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~R 174 (460)
T 3uh0_A 98 WEK---SGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLR 174 (460)
T ss_dssp HHH---HTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCS
T ss_pred HHh---cCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeee
Confidence 873 466788899999999851 37899999999999999998866554 7899999999999999885 78 999
Q ss_pred ceEEeeEEEecCCCchhchH---HHHHHHHHH-HHCCCC--------ceEEEeCCCc--ChhhHHHHHHHHHHHHHhccC
Q psy17091 936 QFYQIGVEAIGFPGPDIDAE---LIIMCSRLW-KNLNLK--------NICLELNSIG--NFNERKKYCIDLINYIKKHKD 1001 (1250)
Q Consensus 936 Ef~Q~g~eiig~~~~~adaE---vi~l~~~~l-~~lgl~--------~~~i~i~~~~--i~~~~~~~~~~~~~~l~~~~~ 1001 (1250)
||+|.|+|+||.++ .+++| ++.++.+++ +.||++ ++.++++... ++..
T Consensus 175 eF~q~d~~~f~~~e-~~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l~t~pe~~~G~----------------- 236 (460)
T 3uh0_A 175 KFHQDDGHIFCTPS-QVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRPDHFIGD----------------- 236 (460)
T ss_dssp EEEEEEEEEEECGG-GHHHHHHHHHHHHHHHHTTTSCCC-----CCSSCEEEEECCCSSCCSC-----------------
T ss_pred eEEEeeEEEEcCHH-HHHHHHHHHHHHHHHHHHHHcCCCCcccccccceEEEEccCCcccCCC-----------------
Confidence 99999999999764 55665 889999999 999998 7889887743 0000
Q ss_pred chhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceE
Q psy17091 1002 SKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTV 1081 (1250)
Q Consensus 1002 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~v 1081 (1250)
.. ..+.+. ..|...|+..|.++.++++ ...|| |..
T Consensus 237 -----~~----------------------~w~~ae--------------~~L~~~l~~~g~~~~~~~g---~gafy-gpk 271 (460)
T 3uh0_A 237 -----LK----------------------VWNHAE--------------QVLKEILEESGKPWKLNPG---DGAFY-GPK 271 (460)
T ss_dssp -----HH----------------------HHHHHH--------------HHHHHHHHHHTCCEEEETT---CSCSS-CCE
T ss_pred -----HH----------------------HHHHHH--------------HHHHHHHHHhCCCeeECCC---ccccc-cce
Confidence 00 000000 0122233345777777776 33367 533
Q ss_pred EEEEE-CCCCCC---cce----eecccchHH-HHhcCCCCCCeE----EEEEeHHHHHHHHHHc--cCCCCCCCCceEEE
Q psy17091 1082 FEWTT-DKLGSQ---NSI----CGGGRYDFL-IKKFSNKFVPAS----GFAIGIERLIELIKKI--NINHNFSHQCDIYI 1146 (1250)
Q Consensus 1082 Fe~~~-~~~~~~---~~i----~~GGRYD~L-~~~fg~~~~pav----Gfsi~lerl~~~l~~~--~~~~~~~~~~~v~V 1146 (1250)
.++.. +..|.. .++ ..+.|||-. ...-|....|++ +|+ ++||++.+|.++ +.||.|.+|.+|+|
T Consensus 272 id~~~~d~~gr~~q~~Tiqld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~G-g~eRli~~Lie~~~g~~P~~laP~qv~V 350 (460)
T 3uh0_A 272 LDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFG-SIERFMALLIDSNEGRWPFWLNPYQAVI 350 (460)
T ss_dssp EEEEEECTTSCEEEEEEEEEESHHHHHTTCCEECTTSCEECCEEEEEEEEE-EHHHHHHHHHHHHTTCCCGGGCSCCEEE
T ss_pred EEEEEEccCCCeeeecccccccccccccceEEECCCCCccCcEEEecCcch-HHHHHHHHHHHHcCCCCCCCCCCceEEE
Confidence 34422 223321 111 124566633 233345557888 477 999999999885 68999999999999
Q ss_pred EEcChH---HHHHHHHHHHHHHHc--------------CCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccC
Q psy17091 1147 VHVGKE---AELKAFVLSENLRTL--------------GLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIIN 1209 (1250)
Q Consensus 1147 ~~~~~~---~~~~a~~~a~~Lr~~--------------gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~ 1209 (1250)
++++++ ...+|.+++++||++ |++|++|++ +.++++++++|++.|+||+|+||++|+++
T Consensus 351 ipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~----~~~lg~k~r~Ad~~g~p~~ivvG~~E~~~ 426 (460)
T 3uh0_A 351 IPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIR----NEPVGYRIKSAILKNYSYLIIVGDEEVQL 426 (460)
T ss_dssp EESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCC----SSCHHHHHHHHHHHTCSEEEEECHHHHHH
T ss_pred EEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECC----CCCHHHHHHHHHHcCCCEEEEEcchhhhC
Confidence 999987 888999999999999 999999987 68999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCCCCCc-ceeeehHHHHHHHHHHHH
Q psy17091 1210 NTLIIKDLRNKYEDPTLK-QISISFKDAENYFYKKII 1245 (1250)
Q Consensus 1210 g~v~vk~~~~~~~~~~~~-e~~v~~~el~~~l~~~i~ 1245 (1250)
|+|+||+|+++ + +..|++++++++|++.+.
T Consensus 427 g~Vtvr~r~~~------e~q~~v~~~el~~~l~~~~~ 457 (460)
T 3uh0_A 427 QKYNIRERDNR------KSFEKLTMSQIWEKFIELEK 457 (460)
T ss_dssp TCEEEEEGGGT------TSCEEECHHHHHHHHHHHHH
T ss_pred CeEEEEECCCC------ceeEEeeHHHHHHHHHHHHH
Confidence 99999999999 8 999999999999998875
No 25
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=5.4e-34 Score=341.50 Aligned_cols=331 Identities=13% Similarity=0.089 Sum_probs=257.5
Q ss_pred eeccCCCCCCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccC----
Q psy17091 816 LIPFNCFPNSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELN---- 886 (1250)
Q Consensus 816 lip~n~~~~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~---- 886 (1250)
++-+.|..+...-.|....+ +.+++.+.++|+. .|.+|..+..+.+... +++++.+.++||.|.|+ +
T Consensus 27 li~~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~-ei~tP~l~~~el~~~~--sgh~d~f~~emy~~~d~-g~~~l 102 (477)
T 1hc7_A 27 LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQ-NAYFPLFIPMSFLRKE--AEHVEGFSPELAVVTHA-GGEEL 102 (477)
T ss_dssp SEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCE-ECBCCSEEESTTC-----------CCTTCEEEEEE-SSSEE
T ss_pred CeeecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCE-EEecCccccHHHHhhc--CCcccccccceEEEECC-CCccC
Confidence 34445555554444544332 3467777899998 8999999999987521 55677888999999997 6
Q ss_pred CcccccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCCCCC--CCCceEEeeEEEecCCCchhchHHHHH---H
Q psy17091 887 GDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQYG--RYRQFYQIGVEAIGFPGPDIDAELIIM---C 960 (1250)
Q Consensus 887 g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~~g--r~REf~Q~g~eiig~~~~~adaEvi~l---~ 960 (1250)
|+.++|||+.|++++|.+++...++ ++|+|+||+|+|||+|.+..| |.|||+|+|+|+||.+...+|+|++.+ +
T Consensus 103 ~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~ 182 (477)
T 1hc7_A 103 EEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIY 182 (477)
T ss_dssp EEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999876665 799999999999999955558 999999999999999999999998776 7
Q ss_pred HHHH-HHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHH
Q psy17091 961 SRLW-KNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLL 1039 (1250)
Q Consensus 961 ~~~l-~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 1039 (1250)
.++| +.||++ +.+.+++..- +.. ....
T Consensus 183 ~~i~~~~Lgl~-~~~~~~~~~e----------------~~~---------------g~~~-------------------- 210 (477)
T 1hc7_A 183 ARLAREYAAIP-VIEGLKTEKE----------------KFA---------------GAVY-------------------- 210 (477)
T ss_dssp HHHHHHHHCCC-CEEEECCTTT----------------SCT---------------TSSE--------------------
T ss_pred HHHHHHhcCCe-EEEEeCChHH----------------hcC---------------Cccc--------------------
Confidence 8999 899996 8888876210 000 0000
Q ss_pred HHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCC-CCCeEEE
Q psy17091 1040 DYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNK-FVPASGF 1118 (1250)
Q Consensus 1040 ~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~-~~pavGf 1118 (1250)
...++..+..+..||+|++|+. +...+.+.|+||++. .|.. ..+.+||
T Consensus 211 -----------------------~~~ie~~~~dgr~~~~gt~~~l-----g~~~s~~~g~~y~~~---~G~~~~~~~~~~ 259 (477)
T 1hc7_A 211 -----------------------TTTIEALMKDGKALQAGTSHYL-----GENFARAFDIKFQDR---DLQVKYVHTTSW 259 (477)
T ss_dssp -----------------------EEEEEEECTTSCEEEEEEEEEE-----ETHHHHHTTCEEECT---TSCEEECEEEEE
T ss_pred -----------------------ceEEEEEcCCCcEEEEeeeEEc-----ccccccccCeEEECC---CCCEEeeeEeec
Confidence 0001111112345789999986 334478999999752 2432 3457899
Q ss_pred EEeHHHHHHHHHHc-----c-CCCCCCCCceEEEEEcCh-----HHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHH
Q psy17091 1119 AIGIERLIELIKKI-----N-INHNFSHQCDIYIVHVGK-----EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQ 1187 (1250)
Q Consensus 1119 si~lerl~~~l~~~-----~-~~~~~~~~~~v~V~~~~~-----~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~ 1187 (1250)
+++ +|++.+|.+. + .||.+.+|++|+|++++. +...+|.+++++||++|++|++|++ .+.+++++
T Consensus 260 Gig-eRli~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~---~~~s~g~k 335 (477)
T 1hc7_A 260 GLS-WRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDR---DQHTPGYK 335 (477)
T ss_dssp EEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCC---SSSCHHHH
T ss_pred cHH-HHHHHHHHHHhCccccccCCcccCCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCC---CCCCHHHH
Confidence 999 9999999774 3 688889999999999975 6788999999999999999999864 14789999
Q ss_pred HHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHH
Q psy17091 1188 MKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 1244 (1250)
Q Consensus 1188 ~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i 1244 (1250)
+++|++.|+||+|+||++|+++|+|+||+|+ + ++..|+++++++.|.+.+
T Consensus 336 ~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~------eq~~v~~~el~~~l~~~l 385 (477)
T 1hc7_A 336 FHEWELKGVPFRVELGPKDLEGGQAVLASRL-G------GKETLPLAALPEALPGKL 385 (477)
T ss_dssp HHHHHHTTCSEEEEECHHHHHTTEEEEEETT-S------CCCEEEGGGHHHHHHHHH
T ss_pred HHHHhhcCCCEEEEECcchhcCCEEEEEEec-C------ceEEEeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9 899999999999997766
No 26
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=1.9e-33 Score=336.14 Aligned_cols=331 Identities=14% Similarity=0.110 Sum_probs=264.6
Q ss_pred eeecc-CCCCCCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccC--
Q psy17091 815 NLIPF-NCFPNSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELN-- 886 (1250)
Q Consensus 815 nlip~-n~~~~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~-- 886 (1250)
+||-| .+..+...-.|....+ +.+++.++++|+. .|++|..++.+.+.. ..++++.+.++||.|.|+ +
T Consensus 19 ~li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~-ei~tP~l~~~~l~~~--~~G~~~~~~~emy~~~d~-g~~ 94 (459)
T 1nj8_A 19 EIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHD-EALFPMLIPEDLLAK--EAEHIKGFEDEVYWVTHG-GKT 94 (459)
T ss_dssp SSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCE-ECBCCSEEEHHHHHH--HCSSSGGGGGGCEEEEES-SSS
T ss_pred CCccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCE-EeeCCcccCHHHHhh--hcCcccccchhhEEEecc-Ccc
Confidence 45666 4555655555554333 3467777899999 899999999988741 144556778999999997 5
Q ss_pred --CcccccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCC-CCC--CCCceE-EeeEEEecCCCchhchH---H
Q psy17091 887 --GDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERP-QYG--RYRQFY-QIGVEAIGFPGPDIDAE---L 956 (1250)
Q Consensus 887 --g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~-~~g--r~REf~-Q~g~eiig~~~~~adaE---v 956 (1250)
|+.++|||+.|++++|+++....++ ++|+|+||+|+|||+|++ +.| |.|||+ |+|+|+||.+...+|+| +
T Consensus 95 ~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~ 174 (459)
T 1nj8_A 95 QLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEA 174 (459)
T ss_dssp EEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHH
T ss_pred cCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHH
Confidence 7899999999999999999876655 799999999999999988 778 999999 99999999998899988 8
Q ss_pred HHHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhh
Q psy17091 957 IIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAP 1036 (1250)
Q Consensus 957 i~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1036 (1250)
+.++.++|+.||++ +.+.+++.. .. + ....
T Consensus 175 i~~~~~~~~~LGl~-~~~~~~~~~---------------------ek-~---------~ga~------------------ 204 (459)
T 1nj8_A 175 ISIYKKFFDTLGIP-YLISKRPEW---------------------DK-F---------PGAE------------------ 204 (459)
T ss_dssp HHHHHHHHHHHTCC-CEEEEECTT---------------------SC-C---------TTCS------------------
T ss_pred HHHHHHHHHHCCCc-eEEeecCch---------------------hh-c---------CCcc------------------
Confidence 99999999999996 887776411 00 0 0000
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCC-CCCCe
Q psy17091 1037 KLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSN-KFVPA 1115 (1250)
Q Consensus 1037 ~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~-~~~pa 1115 (1250)
....++..+..|..++.|.+|+. +...+.+.|+||++.- |. ...+.
T Consensus 205 -------------------------~~~~ie~~~~dg~~~e~gt~~~l-----g~~~s~~~~~~Y~~~~---G~~~~v~~ 251 (459)
T 1nj8_A 205 -------------------------YTMAFDTIFPDGRTMQIATVHNL-----GQNFSKTFEIIFETPT---GDKDYAYQ 251 (459)
T ss_dssp -------------------------EEEEEEEECTTSCEEEEEEEEEE-----ETHHHHHTTCEEECTT---SSEEECEE
T ss_pred -------------------------cceeEEEEcCCCcEEEEEEEeec-----ccccccccCeEEECCC---CCEeeeeE
Confidence 00112222233666788888764 3344788999998621 33 23467
Q ss_pred EEEEEeHHHHHHHHHHc------cCCCCCCCCceEEEEEc-C-h---HHHHHHHHHHHHHHHcCCEEEEeeccccccccH
Q psy17091 1116 SGFAIGIERLIELIKKI------NINHNFSHQCDIYIVHV-G-K---EAELKAFVLSENLRTLGLKVILNCVFNNIHESF 1184 (1250)
Q Consensus 1116 vGfsi~lerl~~~l~~~------~~~~~~~~~~~v~V~~~-~-~---~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~ 1184 (1250)
+||+++ +|++.+|.+. ..+|.+.+|++|+|+++ + + +...+|.+++++||++ ++|++|++ +.++
T Consensus 252 ~~~Gig-eRli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~D~~----~~~~ 325 (459)
T 1nj8_A 252 TCYGIS-DRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDR----DIRP 325 (459)
T ss_dssp EEEEEC-THHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHHTT-SCEEECCS----CSCH
T ss_pred eeccHH-HHHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCcHHHHHHHHHHHHHHHhhh-cEEEEECC----CCCH
Confidence 899999 9999999764 26888999999999999 5 3 6788999999999999 99999976 6899
Q ss_pred HHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHH
Q psy17091 1185 KSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 1244 (1250)
Q Consensus 1185 ~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i 1244 (1250)
++++++|++.|+||+|+||++|+++|+|+||+|+++ ++..|++++++++|.+.+
T Consensus 326 g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~------eq~~v~~~el~~~l~~~l 379 (459)
T 1nj8_A 326 GRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTM------EKFQVDETQLMEVVEKTL 379 (459)
T ss_dssp HHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTTC------CEEEEETTSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECcchhcCCEEEEEECCCC------ceEEEeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999999998766
No 27
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=1e-32 Score=341.58 Aligned_cols=370 Identities=16% Similarity=0.129 Sum_probs=226.1
Q ss_pred HHHHHH-hCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccc--------------------------------
Q psy17091 838 FAKILM-NSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDE-------------------------------- 884 (1250)
Q Consensus 838 f~~iL~-~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~-------------------------------- 884 (1250)
+++.+. ..|+. .|.+|.....+.|. +++|++.+.+.|+++.|.
T Consensus 111 ~r~~~~~~~g~~-EV~tP~l~~~~lwk---~SGH~~~f~d~m~~~~~~~e~yr~D~l~e~~~~~~~~~~~~~~~~~~e~~ 186 (693)
T 2zt5_A 111 WRQHFIQEEQIL-EIDCTMLTPEPVLK---TSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEME 186 (693)
T ss_dssp HHHHTHHHHTCE-ECCCCSEEEHHHHH---HHTHHHHCEEEEEEBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHhcCcE-EEEeCCcccHHHHh---hcCCcccccccceeeccCCceeeccHhHHHHHHHhhccccccHHHHHHHH
Confidence 455554 45988 89999999999986 677788777766644332
Q ss_pred ------------------------------------------------cCCcccccCCCCcHHH----HHHHHHcCCCCC
Q psy17091 885 ------------------------------------------------LNGDNLSLRPEGTASV----IRSVIENNLIYD 912 (1250)
Q Consensus 885 ------------------------------------------------~~g~~l~LRpD~T~~i----aR~~a~~~~~~~ 912 (1250)
.+|+.+.||||.|+++ .|.+..++. +
T Consensus 187 ~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~--~ 264 (693)
T 2zt5_A 187 SVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQG--K 264 (693)
T ss_dssp HHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTT--C
T ss_pred HHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeeccccchHHHHHHHHHHHHhCc--C
Confidence 0357889999999998 888887644 7
Q ss_pred CCeeEEEEeceeecC-CCCCC--CCCceEEeeEEEecCCCch--------hchH--------------------------
Q psy17091 913 GPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPD--------IDAE-------------------------- 955 (1250)
Q Consensus 913 ~P~r~yy~g~VfR~e-~~~~g--r~REf~Q~g~eiig~~~~~--------adaE-------------------------- 955 (1250)
+|+++||+|++||+| +|+.| |.|||+|+|+|+||.++.. +|+|
T Consensus 265 LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~ 344 (693)
T 2zt5_A 265 LPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQ 344 (693)
T ss_dssp SCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHH
T ss_pred CCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhhhhccccccccchhhhhhhh
Confidence 999999999999999 99999 9999999999999976654 2333
Q ss_pred ----------HHHHHHHHHHHCCCCceEEEeC-CCc--C--hhh------------H------H-HHHHHHHHHHHhccC
Q psy17091 956 ----------LIIMCSRLWKNLNLKNICLELN-SIG--N--FNE------------R------K-KYCIDLINYIKKHKD 1001 (1250)
Q Consensus 956 ----------vi~l~~~~l~~lgl~~~~i~i~-~~~--i--~~~------------~------~-~~~~~~~~~l~~~~~ 1001 (1250)
+|.++.+++..+|++...+++. |.. . ... + . +...++.........
T Consensus 345 g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~~s~~ 424 (693)
T 2zt5_A 345 GVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKV 424 (693)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEEEEEECCCSHHHHHHHHHHTC
T ss_pred cccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8889999999999975444432 200 0 000 0 0 000122222211111
Q ss_pred chhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCC-ceEEEeCCCCCCCCCCcce
Q psy17091 1002 SKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNN-ISYKINTKLVRGMDYYNRT 1080 (1250)
Q Consensus 1002 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~g-i~i~~D~~~~~~~~YYtG~ 1080 (1250)
...........................+++...++.+.+.+......++.++...|...| +.+.+| |+
T Consensus 425 ~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g~i~i~vd-----------Gt 493 (693)
T 2zt5_A 425 PLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETE-----------GK 493 (693)
T ss_dssp CCCEEEC-------------------------------------------------------------------------
T ss_pred chhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcCCEEEEEC-----------CE
Confidence 100000000000000000000001112333445666777777777778888888888888 445544 68
Q ss_pred EEEEEECCCCC--CcceeecccchHHHHhcCCCCCCeE-EEEEeHHHHHHHHHHc-------------cCCCCCCCCceE
Q psy17091 1081 VFEWTTDKLGS--QNSICGGGRYDFLIKKFSNKFVPAS-GFAIGIERLIELIKKI-------------NINHNFSHQCDI 1144 (1250)
Q Consensus 1081 vFe~~~~~~~~--~~~i~~GGRYD~L~~~fg~~~~pav-Gfsi~lerl~~~l~~~-------------~~~~~~~~~~~v 1144 (1250)
+|++.....+. ...-..|||| .|+| |+|+|++|++.+|.++ ..||.+.+|++|
T Consensus 494 ~Fei~~~~~~~~~y~~~~~Ggry-----------~P~Vi~~s~GigRli~aLie~~~~~~~~~~~r~g~~~P~~lAP~qV 562 (693)
T 2zt5_A 494 TFQLTKDMINVKRFQKTLYVEEV-----------VPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKC 562 (693)
T ss_dssp ------------------CCEEE-----------CCEEEEEEEEHHHHHHHHHHHHEEECSSTTCCEEECCCTTTSSCSE
T ss_pred EEEecccccceeeEEeccCCcEe-----------cCcceeCeehHHHHHHHHHHHhccccccccccccccCCCCCCCCeE
Confidence 88875321111 0011246666 7888 9999999999999775 357888899999
Q ss_pred EEEEcChH--HHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcc--cCCeEEEEEcCCC
Q psy17091 1145 YIVHVGKE--AELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEI--INNTLIIKDLRNK 1220 (1250)
Q Consensus 1145 ~V~~~~~~--~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~--~~g~v~vk~~~~~ 1220 (1250)
+|+++++. ...+|.+++++||++|++|++|++ +.++++++++|++.|+||+|+||++|+ ++|+|+||+|+++
T Consensus 563 ~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~----~~sigkk~k~Ad~~G~p~~IiIG~~El~~~~g~Vtvr~r~t~ 638 (693)
T 2zt5_A 563 SVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDS----SGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSM 638 (693)
T ss_dssp EEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCC----CSCHHHHHHHHHHTTCCEEEEECHHHHTSSSCEEEEEETTTC
T ss_pred EEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHHcCCCEEEEEcchhhhccCCEEEEEECCCC
Confidence 99999864 788999999999999999999976 679999999999999999999999999 9999999999999
Q ss_pred CCCCCCcceeeehHHHHHHHHHHHH
Q psy17091 1221 YEDPTLKQISISFKDAENYFYKKII 1245 (1250)
Q Consensus 1221 ~~~~~~~e~~v~~~el~~~l~~~i~ 1245 (1250)
++..|++++++++|++.+.
T Consensus 639 ------eq~~v~l~el~~~l~~~l~ 657 (693)
T 2zt5_A 639 ------RQIRAEISELPSIVQDLAN 657 (693)
T ss_dssp ------CEEEEETTTHHHHHHHHHT
T ss_pred ------ceEEEeHHHHHHHHHHHHh
Confidence 9999999999999987764
No 28
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=2.3e-32 Score=329.31 Aligned_cols=324 Identities=13% Similarity=0.125 Sum_probs=260.4
Q ss_pred CCCCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccC----Cccccc
Q psy17091 822 FPNSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELN----GDNLSL 892 (1250)
Q Consensus 822 ~~~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~----g~~l~L 892 (1250)
..+..+-.|....+ +.+.+.+++ |+. .|.+|.....+.+-+. .++++.+.++||+|.|. + ++.++|
T Consensus 60 ~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~-ei~tP~l~~~~l~~~~--sG~~~~f~~emy~~~d~-g~~~~~~~l~L 134 (501)
T 1nj1_A 60 VKGMHVWMPHGFMIRKNTLKILRRILDR-DHE-EVLFPLLVPEDELAKE--AIHVKGFEDEVYWVTHG-GLSKLQRKLAL 134 (501)
T ss_dssp STTCCEECHHHHHHHHHHHHHHHHHHTT-TCE-ECCCCSEEEHHHHTTS--HHHHHHTTTTCCEEEEE-TTEEEEEEEEE
T ss_pred CCceEEECccHHHHHHHHHHHHHHHHHc-CCE-EEecCcEecHHHHhcc--cCCcccCCcceEEEecC-CCcccCCeeEE
Confidence 34444444544333 346667778 999 8999999999987521 33556778999999986 4 689999
Q ss_pred CCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCC-CCC--CCCceE-EeeEEEecCCCchhchHH---HHHHHHHH
Q psy17091 893 RPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERP-QYG--RYRQFY-QIGVEAIGFPGPDIDAEL---IIMCSRLW 964 (1250)
Q Consensus 893 RpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~-~~g--r~REf~-Q~g~eiig~~~~~adaEv---i~l~~~~l 964 (1250)
||+.|++++|+++....++ ++|+|+||+|+|||+|++ ..| |.|||+ |+++|+++.+...+++|+ +.++.++|
T Consensus 135 rPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~ 214 (501)
T 1nj1_A 135 RPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFF 214 (501)
T ss_dssp CSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 899999999999999988 778 999999 999999998888888885 88899999
Q ss_pred HHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHH
Q psy17091 965 KNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEK 1044 (1250)
Q Consensus 965 ~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 1044 (1250)
+.||++ +.+.++...- . ... +
T Consensus 215 ~~Lgl~-~~~~~~~~~e--------------------~-----------~~~------------------a--------- 235 (501)
T 1nj1_A 215 NSLGIP-YLITRRPPWD--------------------K-----------FPG------------------S--------- 235 (501)
T ss_dssp HHHTCC-CEEEECCTTT--------------------S-----------CTT------------------C---------
T ss_pred HHCCCe-EEEEeCCchh--------------------h-----------cCC------------------c---------
Confidence 999996 8887764210 0 000 0
Q ss_pred hHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCC-CCeEEEEEeHH
Q psy17091 1045 DSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKF-VPASGFAIGIE 1123 (1250)
Q Consensus 1045 ~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~-~pavGfsi~le 1123 (1250)
.-.+.++..++.|..|+.|.+|+. +...+.+.|+||++- . |+.. .+.+|++++ +
T Consensus 236 ----------------~~~~die~~l~~g~~~ei~t~~~l-----g~~~a~~~~~ry~~~--~-g~~~~~h~~g~Gig-e 290 (501)
T 1nj1_A 236 ----------------EYTVAFDTLMPDGKTLQIGTVHNL-----GQTFARTFEIKFETP--E-GDHEYVHQTCYGLS-D 290 (501)
T ss_dssp ----------------SEEEEEEEECTTSCEEEEEEEEEE-----ETHHHHHHTCEEECT--T-SCEEECEEEEEEEC-T
T ss_pred ----------------ccceEEEEEcCCCCEEEEEEEEec-----cccchhhcCeEEECC--C-CCEEeeeeccccHH-H
Confidence 001334555555777788888766 333478889999862 2 4422 345799999 9
Q ss_pred HHHHHHHHc-----c-CCCCCCCCceEEEEEc-C-h---HHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHH
Q psy17091 1124 RLIELIKKI-----N-INHNFSHQCDIYIVHV-G-K---EAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRAN 1192 (1250)
Q Consensus 1124 rl~~~l~~~-----~-~~~~~~~~~~v~V~~~-~-~---~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~ 1192 (1250)
|++.+|.+. | .+|.+.+|.+|+|+++ + + +...+|.+++++||++|++|++|++ +.++++++++|+
T Consensus 291 Rli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~----~~s~g~k~~~a~ 366 (501)
T 1nj1_A 291 RVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDR----DIRAGRKYYEWE 366 (501)
T ss_dssp HHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCC----SSCHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECC----CCCHHHHHHHHH
Confidence 999999874 2 5888899999999999 5 4 6788999999999999999999977 689999999999
Q ss_pred HcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHH
Q psy17091 1193 ASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 1244 (1250)
Q Consensus 1193 ~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i 1244 (1250)
+.|+||+|+||++|+++|+|+||+|+++ ++..|+++++++.|.+.+
T Consensus 367 ~~G~p~~iiiG~~e~~~~~V~vr~r~t~------eq~~v~~~el~~~l~~~l 412 (501)
T 1nj1_A 367 MRGVPLRVEIGPRDLEKGAAVISRRDTG------EKVTADLQGIEETLRELM 412 (501)
T ss_dssp HEECSEEEEECHHHHTTTEEEEEESSSC------CEEEEETTTHHHHHHHHH
T ss_pred hcCCCEEEEECcchhhCCEEEEEECCCC------ceEEEeHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999997765
No 29
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=99.97 E-value=3.4e-31 Score=258.99 Aligned_cols=129 Identities=57% Similarity=0.888 Sum_probs=123.4
Q ss_pred HHhhhcccccc--ccchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccH
Q psy17091 422 FYRTFSLIDAL--EKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDA 499 (1250)
Q Consensus 422 ~r~t~~li~~~--~~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~na 499 (1250)
+++||.++++. .++++|+|+++|+++||+|+++||++||+++|++||++|+++|||+.|++||+||||+||+|+|+||
T Consensus 7 ~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 86 (145)
T 4hr2_A 7 LERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGEDA 86 (145)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred HHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcCCc
Confidence 46799999765 4677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 500 IKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 500 v~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
|+.||+|+|||||..|+|+||||+||.+..+|++|+++++....++|--|.
T Consensus 87 V~~~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~~fF 137 (145)
T 4hr2_A 87 ILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFF 137 (145)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEECCSHHHHHHHHHHHC
T ss_pred HhHHhhccCCCCcccCCCCCcHHHhcCCcCccceECCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998884
No 30
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=99.96 E-value=1.3e-30 Score=256.05 Aligned_cols=131 Identities=34% Similarity=0.585 Sum_probs=123.4
Q ss_pred HHHHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeec-CHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEcc
Q psy17091 420 KYFYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKL-SKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEG 496 (1250)
Q Consensus 420 ~~~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l-~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g 496 (1250)
..+++||.++++.. ++++|+|+++|+++||+|+++||+++ |+++|++||++|+++|||+.|++||+||||+||+|+|
T Consensus 4 ~~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg 83 (146)
T 3evo_A 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEG 83 (146)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEE
T ss_pred CcceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeC
Confidence 34678999996654 56789999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccHHHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 497 EDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 497 ~nav~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+|||+.||+|||||||..|+|+||||+||.+..+|++|+++++....++|--|.
T Consensus 84 ~naV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 137 (146)
T 3evo_A 84 TDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEISIWF 137 (146)
T ss_dssp TTHHHHHHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEECCSHHHHHHHHHHHC
T ss_pred CCHHHHHHHHcCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999988885
No 31
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=99.96 E-value=2.4e-30 Score=255.60 Aligned_cols=129 Identities=35% Similarity=0.548 Sum_probs=123.3
Q ss_pred HHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccH
Q psy17091 422 FYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDA 499 (1250)
Q Consensus 422 ~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~na 499 (1250)
+++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+||
T Consensus 5 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 84 (151)
T 3mpd_A 5 MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDA 84 (151)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred eEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCcH
Confidence 468999996654 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 500 IKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 500 v~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
|+.||+|||||||..|+|+||||+||.+..+|++|+++++....++|--|.
T Consensus 85 V~~~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 135 (151)
T 3mpd_A 85 VSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWI 135 (151)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEECSSHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999988886
No 32
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=99.96 E-value=3.1e-30 Score=255.89 Aligned_cols=128 Identities=30% Similarity=0.593 Sum_probs=122.2
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+|||||||+|+|+|||
T Consensus 12 ~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV 91 (161)
T 4fkx_A 12 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLGVV 91 (161)
T ss_dssp CEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHH
T ss_pred ccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccChH
Confidence 37899996654 5679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||+|||||||..|+|+||||+||.+..+|++|+++++....++|--|.
T Consensus 92 ~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF 141 (161)
T 4fkx_A 92 KGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWF 141 (161)
T ss_dssp HHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHC
T ss_pred HHHHHHhcCCChhhcCCCChhHhhCCCccceeEEeCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999988886
No 33
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=99.96 E-value=3.2e-30 Score=255.60 Aligned_cols=128 Identities=34% Similarity=0.695 Sum_probs=121.9
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+|||||||+|+|+|||
T Consensus 2 ErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV 81 (157)
T 3q8u_A 2 ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAV 81 (157)
T ss_dssp CEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHH
T ss_pred ceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCHH
Confidence 57899996664 5679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||+|||||||..|+|+||||+||.+..+|++|+++++....++|--|.
T Consensus 82 ~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 131 (157)
T 3q8u_A 82 NVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWF 131 (157)
T ss_dssp HHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHC
T ss_pred HHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999996675
No 34
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=99.96 E-value=3.8e-30 Score=251.47 Aligned_cols=128 Identities=37% Similarity=0.672 Sum_probs=122.1
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+|||
T Consensus 2 erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~aV 81 (137)
T 1wkj_A 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVV 81 (137)
T ss_dssp CEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTHH
T ss_pred eeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcHH
Confidence 57889996654 5669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||+++|||||..|+|+||||+||.+..+|++|+++++...+++|--|.
T Consensus 82 ~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 131 (137)
T 1wkj_A 82 AEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFF 131 (137)
T ss_dssp HHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCCcCCCCcchHHhCCCcccceEEecCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999988885
No 35
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=99.96 E-value=4.3e-30 Score=254.54 Aligned_cols=129 Identities=35% Similarity=0.629 Sum_probs=123.2
Q ss_pred HHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccH
Q psy17091 422 FYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDA 499 (1250)
Q Consensus 422 ~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~na 499 (1250)
.++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+||
T Consensus 8 ~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 87 (155)
T 3fkb_A 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGV 87 (155)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 368999996655 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 500 IKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 500 v~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
|+.||+|+|||||..|+|+||||+||.+..+|++|+++.+....++|--|.
T Consensus 88 V~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 138 (155)
T 3fkb_A 88 VASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWF 138 (155)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999998886
No 36
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=99.96 E-value=5.6e-30 Score=249.90 Aligned_cols=128 Identities=38% Similarity=0.634 Sum_probs=121.9
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+|||
T Consensus 3 e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV 82 (136)
T 1k44_A 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAI 82 (136)
T ss_dssp EEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTHH
T ss_pred eEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCHH
Confidence 57899996655 5679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCcc-ccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPI-KAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~-~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||+++|||||. .|+|+||||+||.+..+|++|+++++...+++|--|.
T Consensus 83 ~~~R~l~G~t~p~~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 133 (136)
T 1k44_A 83 AAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWF 133 (136)
T ss_dssp HHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCccccCCCCCcHHHhcCCccceEEEeCCCHHHHHHHHHHhC
Confidence 9999999999999 9999999999999999999999999999999988774
No 37
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=99.96 E-value=6.3e-30 Score=251.37 Aligned_cols=128 Identities=47% Similarity=0.776 Sum_probs=122.4
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+|||
T Consensus 3 erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV 82 (144)
T 1nhk_R 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAV 82 (144)
T ss_dssp EEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHH
T ss_pred eEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCHH
Confidence 57899996654 5679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||+++|||||..|+|+||||+||.+..+|++|+++++...+++|--|.
T Consensus 83 ~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 132 (144)
T 1nhk_R 83 LANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFF 132 (144)
T ss_dssp HHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECSSHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCCcCCCCcchHHhCCCCcceeEEeCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998886
No 38
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=99.96 E-value=4.5e-30 Score=252.16 Aligned_cols=129 Identities=37% Similarity=0.586 Sum_probs=122.4
Q ss_pred HHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccH
Q psy17091 422 FYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDA 499 (1250)
Q Consensus 422 ~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~na 499 (1250)
+++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~na 82 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDA 82 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 357899996654 566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCcccc---ccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 500 IKKHRILIGDTDPIKA---AKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 500 v~~~r~l~G~~~~~~a---~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
|+.||+++|||||..| +|+||||+||.+..+|++|+++++....++|--|.
T Consensus 83 V~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 136 (142)
T 3ztp_A 83 IKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFIF 136 (142)
T ss_dssp HHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHcC
Confidence 9999999999999999 99999999999999999999999999999988775
No 39
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=99.96 E-value=7.5e-30 Score=255.47 Aligned_cols=130 Identities=34% Similarity=0.635 Sum_probs=123.8
Q ss_pred HHHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEcccc
Q psy17091 421 YFYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGED 498 (1250)
Q Consensus 421 ~~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~n 498 (1250)
..++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+|
T Consensus 23 ~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~n 102 (172)
T 3l7u_A 23 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLN 102 (172)
T ss_dssp GGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEESTT
T ss_pred hhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeCCC
Confidence 3568999996654 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 499 AIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 499 av~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
||+.||+|||||||..|+|+||||+||.+..+|++|+++.+....++|--|.
T Consensus 103 aV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~~fF 154 (172)
T 3l7u_A 103 VVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWF 154 (172)
T ss_dssp HHHHHHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEECSSHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeCCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999988886
No 40
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=99.96 E-value=8.3e-30 Score=250.26 Aligned_cols=128 Identities=41% Similarity=0.759 Sum_probs=122.3
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+|||
T Consensus 3 erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV 82 (142)
T 2hur_A 3 ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAV 82 (142)
T ss_dssp EEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHH
T ss_pred eEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccHH
Confidence 57899996654 5669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||+++|||||..|+|+||||+||.+..+|++|+++++...+++|--|.
T Consensus 83 ~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 132 (142)
T 2hur_A 83 QRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFF 132 (142)
T ss_dssp HHHHHHHCCSSTTTSCTTSHHHHHCSSSTTCSEEECSSHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCcccCCCCcchHHhCCCcccceEEeCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998886
No 41
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=99.96 E-value=9.3e-30 Score=251.76 Aligned_cols=128 Identities=33% Similarity=0.647 Sum_probs=122.3
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+|||
T Consensus 2 ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV 81 (148)
T 2vu5_A 2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGVV 81 (148)
T ss_dssp CEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTHH
T ss_pred eEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccChH
Confidence 57899996654 6679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||+++|||||..|+|+||||+||.+..+|++|+++++....++|--|.
T Consensus 82 ~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 131 (148)
T 2vu5_A 82 DTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFF 131 (148)
T ss_dssp HHHHHHHCCSSTTTSCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCccccCCCChHHHhcCCcccceEEeCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998886
No 42
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=99.96 E-value=1.2e-29 Score=251.07 Aligned_cols=133 Identities=32% Similarity=0.612 Sum_probs=124.6
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+|||
T Consensus 3 erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV 82 (150)
T 1pku_A 3 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVV 82 (150)
T ss_dssp CEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTHH
T ss_pred eEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccchH
Confidence 57899996654 6679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHHHhcCCC
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWIHKFGVS 556 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~ 556 (1250)
+.||+++|||||..|+|+||||+||.+..+|++|+++++...+++|--|. .....
T Consensus 83 ~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~~ 137 (150)
T 1pku_A 83 ATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWF-PEGLA 137 (150)
T ss_dssp HHHHHHHCCSSGGGSCTTSHHHHHCSBTTBCSEEECSSHHHHHHHHHHHC-TTCCC
T ss_pred HHHHHHhCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhC-cHHhc
Confidence 99999999999999999999999999999999999999999999998887 43333
No 43
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=99.96 E-value=1.2e-29 Score=250.94 Aligned_cols=135 Identities=30% Similarity=0.578 Sum_probs=125.0
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+|||
T Consensus 2 e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~aV 81 (149)
T 1u8w_A 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVV 81 (149)
T ss_dssp CEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTHH
T ss_pred eeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCch
Confidence 57889996654 6679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHHHhcCCCCc
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWIHKFGVSDF 558 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~~~~~~~~~ 558 (1250)
+.||++||||||..|+|+||||+||.+..+|++|+++.+...+++|--|. .....++
T Consensus 82 ~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~~~~ 138 (149)
T 1u8w_A 82 LTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWF-PDGPVNW 138 (149)
T ss_dssp HHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHC-TTCCCCC
T ss_pred HHHHHHhCCCCcccCCCCCcHHHHCCCCcCceEEecCCHHHHHHHHHHhC-chhhccc
Confidence 99999999999999999999999999999999999999999999998886 4333333
No 44
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=99.96 E-value=1.2e-29 Score=251.99 Aligned_cols=130 Identities=35% Similarity=0.651 Sum_probs=123.5
Q ss_pred HHHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEcccc
Q psy17091 421 YFYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGED 498 (1250)
Q Consensus 421 ~~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~n 498 (1250)
.+++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||++|++||+||||+||+|+|+|
T Consensus 8 ~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~n 87 (157)
T 1xiq_A 8 HMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVD 87 (157)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTT
T ss_pred hhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEeccc
Confidence 4678999996654 66799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 499 AIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 499 av~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
||+.||++||||||..|+|+||||+||.+..+|++|+++.+...+++|--|.
T Consensus 88 aV~~~R~l~G~T~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 139 (157)
T 1xiq_A 88 MVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWF 139 (157)
T ss_dssp HHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHC
T ss_pred chHHHHHHcCCCCCCcCCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998886
No 45
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.96 E-value=6.6e-29 Score=288.86 Aligned_cols=262 Identities=16% Similarity=0.143 Sum_probs=208.9
Q ss_pred hcccCHHHHHHHhh-cCccCCCeeeEEEEcCCCceEEEEEeC-CCeEEEEEeccCCCceeeeeccc-CCcccccccccCC
Q psy17091 561 MTDLSMSLRKKLKN-SVYIKAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQV-GCAINCIFCSTGR 637 (1250)
Q Consensus 561 ~~~~~~~~r~~l~~-~~~~~~~~~~~~~~~~d~t~k~l~~~~-~~~ve~v~~~~~~~~t~c~ssq~-GC~~~C~fC~t~~ 637 (1250)
.+|+|+++|++|++ .|.+.. .. ......++|.|+|+ . |..+|+|++|..++.++|++.++ ||+++|.||+++.
T Consensus 17 ~~~~~~~~r~~l~~~~~~~~~-~~-s~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~i~~~~~gCnl~C~fC~~~~ 92 (342)
T 2yx0_A 17 NPNMPKEVAELFRKQHYEIVG-RH-SGVKLCHWLKKSLT--EGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNCIFCWRPM 92 (342)
T ss_dssp CCSSCHHHHHHHHHTTCEEEB-TT-EEECCCTTHHHHHH--HCCCCHHHHHHCCCGGGEEEEESCSSCCSBCCTTCCCSS
T ss_pred cCcchHHHHHHHhhCCceEec-cc-cceEeccccHhhhc--CCCccceeEEeeecCCCeEEEEeChhhhhCcCcccCCCC
Confidence 47999999999987 566532 11 11112367888876 4 88999999998888899999996 9999999999875
Q ss_pred CC------cccCCChhhhHHHHHHHHHHhhhhhhccccCC-CC------------CCcceeeecccCccCCCHHHHHHHH
Q psy17091 638 QG------FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GK------------RQITNIVMMGMGEPLLNYKSTIGAL 698 (1250)
Q Consensus 638 ~~------~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~-~~------------~~~~~ivfmg~GEpl~n~~~v~~~~ 698 (1250)
.. ..++++++||++|+......+. ++ +| ..+++|+|||+||||+|+ ++.+++
T Consensus 93 ~~~~~~~~~~~~~~~eei~~~i~~~~~~~~--------~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~-~l~~ll 163 (342)
T 2yx0_A 93 ENFLGTELPQPWDDPAFIVEESIKAQRKLL--------IGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYP-YMGDLV 163 (342)
T ss_dssp SSCSCSSCCSSCCCHHHHHHHHHHHHHHHH--------TTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGST-THHHHH
T ss_pred CCCcccccccCcCCHHHHHHHHHHHHHHHh--------hccCCCcccchhhhhhccCCCEEEEcCCCcccchh-hHHHHH
Confidence 43 5688999999999988766542 01 01 247899999889999997 899999
Q ss_pred HHhhcCCCCCCCCceEEEEecCchhH-HHHhhhh--CCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHHHHhhCC
Q psy17091 699 KLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQE--CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSP 775 (1250)
Q Consensus 699 ~~~~~~~~~~~~~~~itvsT~g~~~~-i~~~~~~--~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~~ 775 (1250)
+.+++. +.+++++|+|..|. +++|.+. ....+++|||+++++.|+++.+.+.+++.++++++++.+.+. +
T Consensus 164 ~~~~~~------g~~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~l~~~-g 236 (342)
T 2yx0_A 164 EEFHKR------GFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRDL-P 236 (342)
T ss_dssp HHHHHT------TCEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHHHTTC-S
T ss_pred HHHHHC------CCcEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHHHHhC-C
Confidence 999875 45999999998876 6666653 356799999999999999999887789999999999987643 4
Q ss_pred CceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCcc-ceeEeeeccCCCCCC-----CCCCCcHHHHHHHHHHHHhC--CC
Q psy17091 776 RHMITFEYCMLHGINDTDIHAIELISLMRKNKILT-SCKINLIPFNCFPNS-----NLICSKNSRIKIFAKILMNS--GI 847 (1250)
Q Consensus 776 ~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~-~~~vnlip~n~~~~~-----~~~~p~~e~i~~f~~iL~~~--G~ 847 (1250)
.++++++++++|.||++ +.+++++++. + +.+|+++||||.+.. .+.+|+.+++.+|.+.+.++ ++
T Consensus 237 -~~v~i~~~l~~g~n~~~--~~~l~~~l~~----~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l~~~ 309 (342)
T 2yx0_A 237 -TRTVVRLTLVKGENMHS--PEKYAKLILK----ARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHLPGY 309 (342)
T ss_dssp -SEEEEEEEECTTTTCCC--HHHHHHHHHH----HCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTCTTE
T ss_pred -CCEEEEEEEECCccHHH--HHHHHHHHHH----cCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhccCC
Confidence 48999999999999986 8999999998 5 479999999998765 35689999999999999886 55
Q ss_pred eE
Q psy17091 848 FV 849 (1250)
Q Consensus 848 ~~ 849 (1250)
.+
T Consensus 310 ~I 311 (342)
T 2yx0_A 310 HI 311 (342)
T ss_dssp EE
T ss_pred ce
Confidence 53
No 46
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=99.96 E-value=2.2e-29 Score=250.86 Aligned_cols=128 Identities=30% Similarity=0.605 Sum_probs=122.6
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+|||||||+|+|+|||
T Consensus 25 ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV 104 (162)
T 1ehw_A 25 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVV 104 (162)
T ss_dssp CEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHH
T ss_pred ceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechhHH
Confidence 68999996654 6679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||+++|||||..|+|+||||+||.+..+|++|+++.+...+++|--|.
T Consensus 105 ~~~R~l~G~T~p~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 154 (162)
T 1ehw_A 105 RASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWF 154 (162)
T ss_dssp HHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECSSHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCCCCCCCChHHHhCCCCCCeEEEECCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999988885
No 47
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=99.96 E-value=2e-29 Score=249.69 Aligned_cols=130 Identities=38% Similarity=0.658 Sum_probs=122.3
Q ss_pred HHHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEcccc
Q psy17091 421 YFYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGED 498 (1250)
Q Consensus 421 ~~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~n 498 (1250)
.+++++.++++.. ++++|+|+.+|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+|
T Consensus 8 ~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~n 87 (156)
T 3js9_A 8 HMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPE 87 (156)
T ss_dssp -CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEETT
T ss_pred chhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEeccc
Confidence 4567889996654 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 499 AIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 499 av~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
||++||+++|||||..|+|+||||+||.+..+|++|+++.+...+++|--|.
T Consensus 88 aV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF 139 (156)
T 3js9_A 88 AIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSAEDAARECALWF 139 (156)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHS
T ss_pred hHHHHHHhcCCCCccccCCCCHHHHhCCCCCceeEEcCCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999986665
No 48
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=99.96 E-value=1.3e-29 Score=250.99 Aligned_cols=128 Identities=37% Similarity=0.566 Sum_probs=122.5
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+|||
T Consensus 3 erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~naV 82 (150)
T 1nb2_A 3 ERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNAA 82 (150)
T ss_dssp CCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTHH
T ss_pred eEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCHH
Confidence 57899996654 6679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||+++|||||..|+|+||||+||.+..+|++|+++++....++|--|.
T Consensus 83 ~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 132 (150)
T 1nb2_A 83 ATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFF 132 (150)
T ss_dssp HHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECSSHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCcccCCCCChHHHhcCCccceeEEeCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998886
No 49
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=99.96 E-value=5.8e-30 Score=253.62 Aligned_cols=129 Identities=37% Similarity=0.645 Sum_probs=96.1
Q ss_pred HHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccH
Q psy17091 422 FYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDA 499 (1250)
Q Consensus 422 ~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~na 499 (1250)
.++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+||
T Consensus 7 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 86 (155)
T 3r9l_A 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANV 86 (155)
T ss_dssp SCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEESTTH
T ss_pred hheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 368999996665 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 500 IKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 500 v~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
|+.||+|+|||||..|+|+||||+||.+..+|++|+++++....++|--|.
T Consensus 87 V~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 137 (155)
T 3r9l_A 87 VSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIALWF 137 (155)
T ss_dssp HHHHHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEECSSHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999988885
No 50
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=99.96 E-value=2.8e-29 Score=248.86 Aligned_cols=128 Identities=35% Similarity=0.666 Sum_probs=122.6
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++++++|++||++|+++|||+.|++||+||||+||+|+|+|||
T Consensus 4 erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV 83 (151)
T 3bbb_A 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVV 83 (151)
T ss_dssp CEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHH
T ss_pred ceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCCHH
Confidence 67999996655 6679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||++||||||..|+|+||||+||.+..+|++|+++++....++|--|.
T Consensus 84 ~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 133 (151)
T 3bbb_A 84 KTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWF 133 (151)
T ss_dssp HHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCcccCCCCCcHHHhcCCcccceEEecCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999988885
No 51
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=99.96 E-value=2.6e-29 Score=249.62 Aligned_cols=128 Identities=34% Similarity=0.583 Sum_probs=122.6
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||++|++||+||||+||+|+|+|||
T Consensus 6 erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV 85 (153)
T 1s57_A 6 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVV 85 (153)
T ss_dssp EEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETTHH
T ss_pred ceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEecccHH
Confidence 57899996654 6679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||++||||||..|+|+||||+||.+..+|++|+++.+...+++|--|.
T Consensus 86 ~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 135 (153)
T 1s57_A 86 ASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWF 135 (153)
T ss_dssp HHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCccccCCcchHHHhcCCCcCceEEcCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998886
No 52
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=99.95 E-value=4.3e-29 Score=251.07 Aligned_cols=131 Identities=34% Similarity=0.622 Sum_probs=124.3
Q ss_pred HHHHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccc
Q psy17091 420 KYFYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGE 497 (1250)
Q Consensus 420 ~~~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~ 497 (1250)
...++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||++|++||+||||+||+|+|+
T Consensus 19 ~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 98 (169)
T 1zs6_A 19 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGL 98 (169)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred hhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecC
Confidence 34578999996654 6679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 498 DAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 498 nav~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
|||+.||+++|||||..|+|+||||+||.+..+|++|+++.+...+++|--|.
T Consensus 99 ~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 151 (169)
T 1zs6_A 99 DVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWF 151 (169)
T ss_dssp THHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECSSHHHHHHHHHHHS
T ss_pred CchHHHHHHhCCCCcccCCCCChHHHHcCCCcCceEEecCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998886
No 53
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=99.95 E-value=3.7e-29 Score=253.78 Aligned_cols=132 Identities=36% Similarity=0.591 Sum_probs=124.7
Q ss_pred HHHHHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEcc
Q psy17091 419 EKYFYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEG 496 (1250)
Q Consensus 419 ~~~~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g 496 (1250)
....++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+|||||||+|+|
T Consensus 29 ~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvleG 108 (182)
T 1w7w_A 29 EAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEG 108 (182)
T ss_dssp -CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred cchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEec
Confidence 344578999996654 677999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 497 EDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 497 ~nav~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+|||+.||+|||||||..|+|+||||+||.+..+|++|+++++...+++|--|.
T Consensus 109 ~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 162 (182)
T 1w7w_A 109 EGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 162 (182)
T ss_dssp TTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHC
T ss_pred ccHHHHHHHHhCCCCCCCCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998886
No 54
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=99.95 E-value=3.3e-29 Score=250.59 Aligned_cols=132 Identities=32% Similarity=0.608 Sum_probs=123.3
Q ss_pred HHHHHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEcc
Q psy17091 419 EKYFYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEG 496 (1250)
Q Consensus 419 ~~~~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g 496 (1250)
....++||.++++.. ++++|+|+.+|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|
T Consensus 5 ~~~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg 84 (164)
T 2az3_A 5 TDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEG 84 (164)
T ss_dssp --CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred cCccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEcc
Confidence 344578999996654 667999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChh--HHHHHHHHHH
Q psy17091 497 EDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMP--FRAKQLQKWI 550 (1250)
Q Consensus 497 ~nav~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~--~ra~qi~~w~ 550 (1250)
+|||+.||++||||||..|+|+||||+||.+..+|++|+++.+. ..+++|--|.
T Consensus 85 ~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~~fF 140 (164)
T 2az3_A 85 ADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFF 140 (164)
T ss_dssp TTHHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHC
T ss_pred ccHHHHHHHHhCCCCccccCCCcchhhhcccccCceEEecCCcchhhHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998 8888888885
No 55
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-29 Score=249.61 Aligned_cols=131 Identities=32% Similarity=0.637 Sum_probs=117.0
Q ss_pred HHHHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccc
Q psy17091 420 KYFYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGE 497 (1250)
Q Consensus 420 ~~~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~ 497 (1250)
...++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||++|++||+||||+||+|+|+
T Consensus 11 ~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 90 (161)
T 3b54_A 11 SQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGK 90 (161)
T ss_dssp CCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEEST
T ss_pred cccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEecc
Confidence 34568999996654 6679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 498 DAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 498 nav~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
|||+.||++||||||..|+|+||||+||.+..+|++|+++.+...+++|--|.
T Consensus 91 naV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF 143 (161)
T 3b54_A 91 DVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWF 143 (161)
T ss_dssp THHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHS
T ss_pred ChHHHHHHHhCCCCcccCCCCChHHHhcCCCCCceEEeCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988886
No 56
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.95 E-value=7.9e-28 Score=290.16 Aligned_cols=282 Identities=16% Similarity=0.174 Sum_probs=202.4
Q ss_pred CcccccCCCCcHHH----HHHHHHcCCCCCCCeeEEEEeceeecC-CCCCC--CCCceEEeeEEEecCCCchh--chHHH
Q psy17091 887 GDNLSLRPEGTASV----IRSVIENNLIYDGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPDI--DAELI 957 (1250)
Q Consensus 887 g~~l~LRpD~T~~i----aR~~a~~~~~~~~P~r~yy~g~VfR~e-~~~~g--r~REf~Q~g~eiig~~~~~a--daEvi 957 (1250)
++.+.|||+.|+++ +|.+.++.+ ++|+|+||+|++||+| +|+.| |.|||+|.|+|+|+.++... +++++
T Consensus 180 ~~~~~LRPE~t~~i~~~~~~~~~sy~r--~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i 257 (505)
T 1ati_A 180 GLLAYLRPETAQGIFVNFKNVLDATSR--KLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWV 257 (505)
T ss_dssp GGEEEECSSSHHHHHHTHHHHHHHHTC--CSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHH
T ss_pred ccceeecccchhHHHHHHHHHHHhcCC--CCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHH
Confidence 35679999999999 776666522 6999999999999999 88889 99999999999999887666 78999
Q ss_pred HHHHHHHHHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhcccc----ccccccHHHHHHHh
Q psy17091 958 IMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLR----VLDSKNLIIREILI 1033 (1250)
Q Consensus 958 ~l~~~~l~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~----~l~~~~~~~~~~~~ 1033 (1250)
.++.++|+.||++.+.+.+.... .... .......+-. +.+...... .....+..+..
T Consensus 258 ~~~~~i~~~LGl~~~~v~~~~~~--~~~~----------~~~~~~~~d~----E~~~p~~~~e~~g~~~~~d~~L~~--- 318 (505)
T 1ati_A 258 EERLKWWQEMGLSRENLVPYQQP--PESS----------AHYAKATVDI----LYRFPHGSLELEGIAQRTDFDLGS--- 318 (505)
T ss_dssp HHHHHHHHHTTCCGGGEEEEECC--TTTS----------CTTCSEEEEE----EEEETTEEEEEEEEEECTTHHHHH---
T ss_pred HHHHHHHHHcCCCeEEEEECCCC--hHhh----------hcccHHHHhH----HhhcCCCCccchhhhcccceecch---
Confidence 99999999999976555544321 0000 0000000000 000000000 00000000000
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCC
Q psy17091 1034 NAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFV 1113 (1250)
Q Consensus 1034 ~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~ 1113 (1250)
-.......++.+.+| .+-|+++.|+.... .+|+|| .
T Consensus 319 -------------------~~~~~~~~~~~~~~~------~n~~~~~~~~y~d~--------~g~~~y-----------~ 354 (505)
T 1ati_A 319 -------------------HTKDQEALGITARVL------RNEHSTQRLAYRDP--------ETGKWF-----------V 354 (505)
T ss_dssp -------------------HCSSTTTTTCCSCCC------CCSCCCSCCCEECS--------SSCCEE-----------C
T ss_pred -------------------hhccccccceeeeec------ccccceeEEEEEcC--------CCCeee-----------c
Confidence 000000011111112 23378877776532 145677 4
Q ss_pred C-eEEEEEeHHHHHHHHHHc---------c------CCCCCCCCceEEEEEcCh---HHHHHHHHHHHHHHHcC-CEEEE
Q psy17091 1114 P-ASGFAIGIERLIELIKKI---------N------INHNFSHQCDIYIVHVGK---EAELKAFVLSENLRTLG-LKVIL 1173 (1250)
Q Consensus 1114 p-avGfsi~lerl~~~l~~~---------~------~~~~~~~~~~v~V~~~~~---~~~~~a~~~a~~Lr~~g-i~v~~ 1173 (1250)
| ++|+++|+||++.++.+. + .+|.+.+|++|+|+++++ +...+|.+++++||++| ++|++
T Consensus 355 p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~ 434 (505)
T 1ati_A 355 PYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLY 434 (505)
T ss_dssp CEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEE
T ss_pred ceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEE
Confidence 5 889999999999999875 2 378788999999999987 78889999999999999 99998
Q ss_pred eeccccccccHHHHHHHHHHcCCCEEEEEccCccc---------CCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHH
Q psy17091 1174 NCVFNNIHESFKSQMKRANASNANFAAIIGENEII---------NNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 1244 (1250)
Q Consensus 1174 ~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~---------~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i 1244 (1250)
|++ .++++++++|++.|+||+||||++|++ +|+|+||+|+++ ++..|++++++++|++.+
T Consensus 435 D~~-----~sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g~V~vr~r~t~------~q~~v~~~el~~~l~~~l 503 (505)
T 1ati_A 435 EDT-----GNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTM------EQIRLHVDELEGFLRERL 503 (505)
T ss_dssp CCC-----SCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTC------CEEEEEHHHHHHHHHHHH
T ss_pred CCC-----CCHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCCEEEEEECCCC------ceEEEEHHHHHHHHHHHh
Confidence 753 689999999999999999999999999 999999999999 999999999999998764
No 57
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=99.95 E-value=5.4e-29 Score=248.84 Aligned_cols=130 Identities=35% Similarity=0.617 Sum_probs=123.4
Q ss_pred HHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccH
Q psy17091 422 FYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDA 499 (1250)
Q Consensus 422 ~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~na 499 (1250)
.++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||++|+++|||+.|++||+||||+||+|+|+||
T Consensus 7 ~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 86 (160)
T 2dxe_A 7 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYA 86 (160)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred CCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCH
Confidence 367999996655 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCccccccCCccchhhcchhh---hhhhhcCChhHHHHHHHHHHH
Q psy17091 500 IKKHRILIGDTDPIKAAKGTIRADFAESIDK---NIVHELGEMPFRAKQLQKWIH 551 (1250)
Q Consensus 500 v~~~r~l~G~~~~~~a~p~siR~~~g~~~~~---n~~~~~g~~~~ra~qi~~w~~ 551 (1250)
|+.||+++|||||..|+|+||||+||.+..+ |++|+++++...+++|--|.-
T Consensus 87 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~~fF~ 141 (160)
T 2dxe_A 87 VEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFK 141 (160)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCCcCCCCChHHHhcCCcccCcCceEEcCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999 999999999999999988863
No 58
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.1e-27 Score=279.96 Aligned_cols=334 Identities=11% Similarity=0.055 Sum_probs=237.1
Q ss_pred eeccCCCCCCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCc--
Q psy17091 816 LIPFNCFPNSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGD-- 888 (1250)
Q Consensus 816 lip~n~~~~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~-- 888 (1250)
||-|-+..+..+-.|....+ +.+.+.+.++|+. .|.+|.....+.+-+ .+++++.+.++||.|.|. +++
T Consensus 44 lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~-ev~tP~l~~~~l~~k--~sGh~~~f~~emy~~~d~-g~~~l 119 (519)
T 4hvc_A 44 MIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVE-NCYFPMFVSQSALEK--EKTHVADFAPEVAWVTRS-GKTEL 119 (519)
T ss_dssp CEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCE-ECBCCSEEEHHHHTT--SCCSCGGGGGGCEEEEEE-TTEEE
T ss_pred CeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCE-EEeccccccHHHHhc--ccCCcccccccceEEecc-CCccc
Confidence 44443445555445554333 3466677889999 899999999998862 256778889999999987 543
Q ss_pred --ccccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecC-CCCCC--CCCceEEeeEEEecCCCchhchHHH---HH
Q psy17091 889 --NLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPDIDAELI---IM 959 (1250)
Q Consensus 889 --~l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e-~~~~g--r~REf~Q~g~eiig~~~~~adaEvi---~l 959 (1250)
.++|||+.|++++++++....++ ++|+|+||+|+|||+| ++..| |.|||+|.++|+|+.....+++|+. .+
T Consensus 120 ~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~ 199 (519)
T 4hvc_A 120 AEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDL 199 (519)
T ss_dssp EEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHH
Confidence 69999999999999999876665 7999999999999999 77788 9999999999998888888888765 45
Q ss_pred HHHHHHHC-CCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhH
Q psy17091 960 CSRLWKNL-NLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKL 1038 (1250)
Q Consensus 960 ~~~~l~~l-gl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1038 (1250)
+.++++.| |++ +.+...+..- +. .......+
T Consensus 200 ~~~i~~~ll~lp-~~~~~~t~~e----------------~~---------------~Ga~~t~~---------------- 231 (519)
T 4hvc_A 200 YAQVYEELLAIP-VVKGRKTEKE----------------KF---------------AGGDYTTT---------------- 231 (519)
T ss_dssp HHHHHHTTSCCC-CEEEECCTTT----------------SC---------------TTSSEEEE----------------
T ss_pred HHHHHHHhcCCc-ceeeecCCcc----------------cc---------------CCchhhee----------------
Confidence 77899997 784 5444433210 00 00000000
Q ss_pred HHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCe-EE
Q psy17091 1039 LDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPA-SG 1117 (1250)
Q Consensus 1039 ~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pa-vG 1117 (1250)
+.. +=++. |...-.|.+|+.- ...+-.-+=+|-+- ..-|...... .+
T Consensus 232 -----------------------iEa-~~p~~--gr~~q~gT~~~Lg-----~~~s~~~~i~y~d~-~~~g~~~~vh~~~ 279 (519)
T 4hvc_A 232 -----------------------IEA-FISAS--GRAIQGGTSHHLG-----QNFSKMFEIVFEDP-KIPGEKQFAYQNS 279 (519)
T ss_dssp -----------------------EEE-EETTT--TEEEEEEEEEEEE-----THHHHHHTCEEECT-TSTTCEEECEEEE
T ss_pred -----------------------eee-eeccC--CCEEeeccccccc-----chhhhhcCcEEecc-ccCCCEEEEEEcc
Confidence 000 00110 0001123333321 10010011111000 0001111122 36
Q ss_pred EEEeHHHHHHHHHHc-----c-CCCCCCCCceEEEEEcC----------hHHHHHHHHHHHHHHHcCCEEEEeecccccc
Q psy17091 1118 FAIGIERLIELIKKI-----N-INHNFSHQCDIYIVHVG----------KEAELKAFVLSENLRTLGLKVILNCVFNNIH 1181 (1250)
Q Consensus 1118 fsi~lerl~~~l~~~-----~-~~~~~~~~~~v~V~~~~----------~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~ 1181 (1250)
++++ +|++.+|.+. + .+|.+.+|++|+|+|++ ++...+|.+++++|+++|++|++|++ +
T Consensus 280 ~Gi~-~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr----~ 354 (519)
T 4hvc_A 280 WGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLR----D 354 (519)
T ss_dssp EEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCC----S
T ss_pred ccHH-HHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECC----C
Confidence 7777 9999999984 3 58999999999999997 34678899999999999999999987 5
Q ss_pred -ccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHH
Q psy17091 1182 -ESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 1244 (1250)
Q Consensus 1182 -~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i 1244 (1250)
.+++++|++|++.|+||+|+||++|+++|+|+||+|+++ ++..|+++++++.|.+.+
T Consensus 355 ~~s~G~K~~~ael~GiP~~ivIG~kele~g~V~vr~R~tg------eq~~v~~~el~~~l~~ll 412 (519)
T 4hvc_A 355 NYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTG------EKLTVAENEAETKLQAIL 412 (519)
T ss_dssp SSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTTC------CEEEEEGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEECchhhcCCeEEEEECCCC------CccceeHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999 999999999999987665
No 59
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=99.95 E-value=1.3e-28 Score=250.50 Aligned_cols=129 Identities=28% Similarity=0.549 Sum_probs=123.3
Q ss_pred HHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhh-----hccCCcChHHHHHHHhcCCEEEEEE
Q psy17091 422 FYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYS-----IHKNRPFFKNLVNFMISGPVFIQVL 494 (1250)
Q Consensus 422 ~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~-----~~~~~~~~~~l~~~~~sgp~v~~~l 494 (1250)
.++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++||+ +|+++|||+.|++||+|||||||+|
T Consensus 26 ~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvamvl 105 (190)
T 4dz6_A 26 LQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFVV 105 (190)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEEEE
T ss_pred hhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEEEE
Confidence 468999996654 577999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ccccHHHHHHhhhCCCCccccccCCccchhhcch----------hhhhhhhcCChhHHHHHHHHHH
Q psy17091 495 EGEDAIKKHRILIGDTDPIKAAKGTIRADFAESI----------DKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 495 ~g~nav~~~r~l~G~~~~~~a~p~siR~~~g~~~----------~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+|+|||+.||+|||||||..|+|+||||+||.+. .+|++|+++++....++|--|.
T Consensus 106 eG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~~fF 171 (190)
T 4dz6_A 106 EGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPIWF 171 (190)
T ss_dssp EEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHHHHC
T ss_pred ecCCHHHHHHHHcCCCChhhcCCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999 9999999999999999998886
No 60
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.94 E-value=3e-26 Score=272.95 Aligned_cols=325 Identities=14% Similarity=0.125 Sum_probs=231.4
Q ss_pred eeecc-CCCCCCCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccC--
Q psy17091 815 NLIPF-NCFPNSNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELN-- 886 (1250)
Q Consensus 815 nlip~-n~~~~~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~-- 886 (1250)
.+|-| -+..+..+-.|....+ +.+.+.+.++|+. .|.+|.....+.+-- .+++++.+.++||.|.|. +
T Consensus 36 glid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~-eV~tP~l~~~el~~k--~sgh~~~f~~emy~v~d~-g~~ 111 (518)
T 3ial_A 36 ELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGIS-QILFPTVIPESFLKK--ESDHIKGFEAECFWVEKG-GLQ 111 (518)
T ss_dssp TCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCE-ECBCCSEEEHHHHTS--SHHHHHHHGGGCEEEEEE-TTE
T ss_pred CCcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCE-EEEcccccCHHHHHh--hcCCcccccccEEEEecC-CCc
Confidence 44555 3555655555654433 3466677889998 899999999987631 134567788999999986 4
Q ss_pred --CcccccCCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecC-CCCCC--CCCceEEeeEEEecCCCchhchHHHHH-
Q psy17091 887 --GDNLSLRPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHE-RPQYG--RYRQFYQIGVEAIGFPGPDIDAELIIM- 959 (1250)
Q Consensus 887 --g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e-~~~~g--r~REf~Q~g~eiig~~~~~adaEvi~l- 959 (1250)
++.++|||+.|++++++++....++ ++|+|+||+|+|||+| ++..| |.|||+|.++++||.+...+++|+..+
T Consensus 112 ~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l 191 (518)
T 3ial_A 112 PLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYW 191 (518)
T ss_dssp EEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHH
Confidence 5799999999999999999876655 8999999999999999 77888 999999999999998888888877665
Q ss_pred --HHHHH-HHCCCCceEEEeCCCcChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhh
Q psy17091 960 --CSRLW-KNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAP 1036 (1250)
Q Consensus 960 --~~~~l-~~lgl~~~~i~i~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1036 (1250)
+.+++ +.||++ +.+..-... + .. . .+
T Consensus 192 ~~~~~i~~~~LGlp-~~~~~~~~~---------------------e----------~~-------~-----------gA- 220 (518)
T 3ial_A 192 KVIDTIFSDELCFK-GQKLRRVCW---------------------D----------RF-------P-----------GA- 220 (518)
T ss_dssp HHHHHHHTTTTCCC-CEEEEECGG---------------------G----------CC-------T-----------TC-
T ss_pred HHHHHHHHHhcCCc-EEeeecChh---------------------h----------cc-------C-----------CC-
Confidence 57899 999994 432211000 0 00 0 00
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhhCCceEEEeCCCCCCCCCCcceEEEEEECCCCCCcceeecccchHHHHhcCCCCCCeE
Q psy17091 1037 KLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNKFVPAS 1116 (1250)
Q Consensus 1037 ~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~fg~~~~pav 1116 (1250)
...+.+|.-+..|-..-.|.+|.. +...+-.-+=+|- ..-|....|..
T Consensus 221 ------------------------~yt~~iE~~~pdgr~ie~gt~~~L-----g~~~s~rf~i~y~---d~~g~~~~~h~ 268 (518)
T 3ial_A 221 ------------------------DYSEVSDVVMPCGRVLQTAGIHNL-----GQRFSSTFDILYA---NKANESVHPYL 268 (518)
T ss_dssp ------------------------SEEEEEEEECTTSCEEEEEEEEEE-----ETHHHHHTTCCEE---CTTCCEECCEE
T ss_pred ------------------------ccceEEEEEcCCCCEEEEeceecc-----cchhhhhcCcEEE---CCCCCEeeeEE
Confidence 001222322221111112222211 1000000011110 01122223443
Q ss_pred -EEEEeHHHHHHHHHHcc------CCCCCCCCceEEEEEcC----------hHHHHHHHHHHHHHHHc-CCEEEEeeccc
Q psy17091 1117 -GFAIGIERLIELIKKIN------INHNFSHQCDIYIVHVG----------KEAELKAFVLSENLRTL-GLKVILNCVFN 1178 (1250)
Q Consensus 1117 -Gfsi~lerl~~~l~~~~------~~~~~~~~~~v~V~~~~----------~~~~~~a~~~a~~Lr~~-gi~v~~~~~~~ 1178 (1250)
-++++ +|++.+|.++. .||++.+|.+|+|+|++ ++...+|.++++.|+++ |++|++|++
T Consensus 269 ~~~G~~-~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr-- 345 (518)
T 3ial_A 269 TCAGIS-TRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDD-- 345 (518)
T ss_dssp EEEEEE-THHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCC--
T ss_pred eccchH-HHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCeEEEEECC--
Confidence 23334 99999998742 79999999999999997 45678899999999999 999999875
Q ss_pred cccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCc--ceeeehHHH
Q psy17091 1179 NIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLK--QISISFKDA 1236 (1250)
Q Consensus 1179 ~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~--e~~v~~~el 1236 (1250)
.+.++++++++|+..|+|++|+||++++++|+|+||.|+++ + +..|++++|
T Consensus 346 -~~~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~------~~~k~~v~~~el 398 (518)
T 3ial_A 346 -FSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVG------KDQKRVIPITEV 398 (518)
T ss_dssp -TTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTC------GGGCEEEEHHHH
T ss_pred -CCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCC------ccceeEeeHHHH
Confidence 24789999999999999999999999999999999999998 7 899999999
No 61
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=99.93 E-value=9.6e-27 Score=239.61 Aligned_cols=129 Identities=34% Similarity=0.588 Sum_probs=122.9
Q ss_pred HHhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHh-------------h-----------------
Q psy17091 422 FYRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFY-------------S----------------- 469 (1250)
Q Consensus 422 ~r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y-------------~----------------- 469 (1250)
.++||.++++.. ++++|+|+++|+++||+|+++||+++|+++|++|| +
T Consensus 15 ~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 94 (195)
T 1xqi_A 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGT 94 (195)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSC
T ss_pred hhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhcc
Confidence 368999996654 67799999999999999999999999999999999 8
Q ss_pred ---hccCCcChHHHHHHHhcCCEEEEEEccccHHHHHHhhhCCCCccccccCCccchhhcchhh----------hhhhhc
Q psy17091 470 ---IHKNRPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDK----------NIVHEL 536 (1250)
Q Consensus 470 ---~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav~~~r~l~G~~~~~~a~p~siR~~~g~~~~~----------n~~~~~ 536 (1250)
+|.++|||+.|++||+||||+||+|+|+|||+.||+++|||||..|+|+||||+||.+..+ |++|++
T Consensus 95 ~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~~~~~~~~~~~~~~N~vHgS 174 (195)
T 1xqi_A 95 DDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHAS 174 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCCCCSEEEC
T ss_pred ccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCchhhhccccccccceEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CChhHHHHHHHHHH
Q psy17091 537 GEMPFRAKQLQKWI 550 (1250)
Q Consensus 537 g~~~~ra~qi~~w~ 550 (1250)
+++....++|--|.
T Consensus 175 DS~esA~rEi~~~F 188 (195)
T 1xqi_A 175 DSPSEAEREIRFWF 188 (195)
T ss_dssp SSHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998886
No 62
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=2.8e-24 Score=246.74 Aligned_cols=258 Identities=16% Similarity=0.194 Sum_probs=179.1
Q ss_pred cCHHHHHHHhhcC-ccCCCeeeEEEEcCCCceEEEEEe--C-CCeEEEEEeccCCCceeeeecc-cCCcccccccccCC-
Q psy17091 564 LSMSLRKKLKNSV-YIKAPHIMSDQISFDGTRKWIFHV--K-KNIIETVFIPEKNRNTLCISTQ-VGCAINCIFCSTGR- 637 (1250)
Q Consensus 564 ~~~~~r~~l~~~~-~~~~~~~~~~~~~~d~t~k~l~~~--~-~~~ve~v~~~~~~~~t~c~ssq-~GC~~~C~fC~t~~- 637 (1250)
.|+.+|+.|.... .+.. .|.+++.+|+.+. . |..+|++++|...+.++|+|.+ .||+++|.||+++.
T Consensus 2 ~~~~~~~~l~~~gy~~~~-------~s~~~~~~w~~~~l~~~~~~~~~~~~~~~~~~~l~i~~t~~~Cn~~C~fC~~~~~ 74 (311)
T 2z2u_A 2 IPEEIYKILRKQRYQIDG-------HTAVKLCGWVRKKMLEDKNCYKSKFYGIETHRCIQCTPSVIWCQQNCIFCWRVLP 74 (311)
T ss_dssp CCHHHHHHHHTTTCEEET-------TEEEECCTTHHHHHTTCCCCHHHHHHCCCGGGEEEEESCSSCCSCC---------
T ss_pred CchHHHHHHHhcCceeec-------ccceeeccChHhhhcCCCceEEEEEeeecCCCeEEeccChhHHhCcCcccCCCCC
Confidence 4788888887763 3322 2334443443333 4 8889999999888999999999 69999999999774
Q ss_pred --CC-------cccCCChhhhHHHHHHHHHHhhhh-hhccccC-----CCCCCcceeeecccCccCCCHHHHHHHHHHhh
Q psy17091 638 --QG-------FVRNLTVGEIIGQLWVTEFKLRRE-KNIKINS-----QGKRQITNIVMMGMGEPLLNYKSTIGALKLIL 702 (1250)
Q Consensus 638 --~~-------~~r~l~~~ei~~q~~~~~~~~~~~-~~~~~~~-----~~~~~~~~ivfmg~GEpl~n~~~v~~~~~~~~ 702 (1250)
.| ..++++++||++++......+... .+.++.+ ..+..+++|+|+|+||||++. .+.++++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i~~s~gGEPll~~-~l~~li~~~~ 153 (311)
T 2z2u_A 75 RDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAISLSGEPTLYP-YLDELIKIFH 153 (311)
T ss_dssp -------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEEECSSSCGGGST-THHHHHHHHH
T ss_pred CcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEEEEeCCcCccchh-hHHHHHHHHH
Confidence 22 247899999999998764432100 0000000 001346899999779999975 6999999998
Q ss_pred cCCCCCCCCceEEEEecCchhH-HHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHHHHhhCCCceEEE
Q psy17091 703 SDHAYGLSRRHVILSTSGIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITF 781 (1250)
Q Consensus 703 ~~~~~~~~~~~itvsT~g~~~~-i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~v~~ 781 (1250)
+. +.+++++|+|..|. +++| ....+.+|||+++++.|+++.+. .+.+++.++++++.+.+. + ++++
T Consensus 154 ~~------g~~~~l~TNG~~~~~l~~L---~~~~v~isld~~~~~~~~~i~~~-~~~~~~~v~~~i~~l~~~--g-~v~i 220 (311)
T 2z2u_A 154 KN------GFTTFVVSNGILTDVIEKI---EPTQLYISLDAYDLDSYRRICGG-KKEYWESILNTLDILKEK--K-RTCI 220 (311)
T ss_dssp HT------TCEEEEEECSCCHHHHHHC---CCSEEEEECCCSSTTTC----CC-CHHHHHHHHHHHHHHTTS--S-SEEE
T ss_pred HC------CCcEEEECCCCCHHHHHhC---CCCEEEEEeecCCHHHHHHHhCC-ccchHHHHHHHHHHHHhc--C-CEEE
Confidence 86 45999999999863 2222 24568999999999999999875 457899999999987643 4 7999
Q ss_pred EEEEeccCCCCHHHHHHHHHHhhcCCCcc-ceeEeeeccCCCCCCCC-----CCCcHHHHHHHHHHHHh-CCCeE
Q psy17091 782 EYCMLHGINDTDIHAIELISLMRKNKILT-SCKINLIPFNCFPNSNL-----ICSKNSRIKIFAKILMN-SGIFV 849 (1250)
Q Consensus 782 e~~li~g~nd~~~~~~~l~~~~~~~~~~~-~~~vnlip~n~~~~~~~-----~~p~~e~i~~f~~iL~~-~G~~~ 849 (1250)
++++++|+|| ++.+++++++. + +..|+++||+|.+..++ .+|+.+++.+|.+.+.+ .|+.+
T Consensus 221 ~~~~~~g~n~---~~~~~~~~~~~----~~~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~~~ 288 (311)
T 2z2u_A 221 RTTLIRGYND---DILKFVELYER----ADVHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDENSSYKL 288 (311)
T ss_dssp EEEECTTTTC---CGGGTHHHHHH----HTCSEEEEEECC------------CCCCHHHHHHHHHHHHTSSSEEE
T ss_pred EEEEECCcch---hHHHHHHHHHH----cCCCEEEEEeeEEccccccccccccCCCHHHHHHHHHHHHHhcCceE
Confidence 9999999999 78899999988 5 46899999999987765 48899999999999987 68764
No 63
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.87 E-value=1.7e-21 Score=215.52 Aligned_cols=216 Identities=19% Similarity=0.267 Sum_probs=177.3
Q ss_pred eEEEEEeccCCCceeeeecccCCcccccccccCCC---CcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceee
Q psy17091 604 IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ---GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIV 680 (1250)
Q Consensus 604 ~ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~---~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~iv 680 (1250)
.||...++.+.+...++.|+ ||+++|.||..+.. +..+.++.+++++++.......+ ..+..|+
T Consensus 8 ~~~~~~~~~~pg~~~~i~t~-~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~------------~~~~~i~ 74 (245)
T 3c8f_A 8 SFESCGTVDGPGIRFITFFQ-GCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMN------------ASGGGVT 74 (245)
T ss_dssp EEEEEECTTSSSEEEEEEES-CCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHT------------STTCEEE
T ss_pred cceeccccCCCCcEEEEEeC-CCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhc------------CCCCeEE
Confidence 46777777766677788888 99999999997642 34567899999988876655432 2467899
Q ss_pred ecccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCch----hHHHHhhhhCCCeEEEEccCCChhhhhccCCCCC
Q psy17091 681 MMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGII----PMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 756 (1250)
Q Consensus 681 fmg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~----~~i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~ 756 (1250)
|.| |||+++++++.+.++.+++. +.+++++|+|.. +.+.++.+..+ .+.+||++++++.++++.+
T Consensus 75 ~~G-GEP~l~~~~l~~l~~~~~~~------~~~i~i~Tng~~~~~~~~~~~l~~~~~-~v~isld~~~~~~~~~~~~--- 143 (245)
T 3c8f_A 75 ASG-GEAILQAEFVRDWFRACKKE------GIHTCLDTNGFVRRYDPVIDELLEVTD-LVMLDLKQMNDEIHQNLVG--- 143 (245)
T ss_dssp EEE-SCGGGGHHHHHHHHHHHHTT------TCCEEEEECCCCCCCCHHHHHHHHTCS-EEEEECCCSSHHHHHHHHS---
T ss_pred EEC-CCcCCCHHHHHHHHHHHHHc------CCcEEEEeCCCcCcCHHHHHHHHHhCC-EEEEeCCCCCHHHhhhccC---
Confidence 999 99999999999999999875 457999999954 45777776655 3779999999999999955
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccc--eeEeeeccCCCCCC---------
Q psy17091 757 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTS--CKINLIPFNCFPNS--------- 825 (1250)
Q Consensus 757 ~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~--~~vnlip~n~~~~~--------- 825 (1250)
.+.++++++++...+. + .++.+.+++++|+||+.+++.+++++++. +. ..+++.||+|.+..
T Consensus 144 -~~~~~~~~~i~~l~~~-g-~~v~i~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (245)
T 3c8f_A 144 -VSNHRTLEFAKYLANK-N-VKVWIRYVVVPGWSDDDDSAHRLGEFTRD----MGNVEKIELLPYHELGKHKWVAMGEEY 216 (245)
T ss_dssp -SCSHHHHHHHHHHHHH-T-CCEEEEEEECTTTTCCHHHHHHHHHHHHH----HCCEEEEEEEECCCCSHHHHHHTTCCC
T ss_pred -CCHHHHHHHHHHHHhc-C-CEEEEEEeecCCCCCCHHHHHHHHHHHHh----cCCCceeEEEeccccChhHHHhhCccc
Confidence 4569999999877654 4 47999999999999999999999999998 65 78999999997643
Q ss_pred ---CCCCCcHHHHHHHHHHHHhCCCeEE
Q psy17091 826 ---NLICSKNSRIKIFAKILMNSGIFVT 850 (1250)
Q Consensus 826 ---~~~~p~~e~i~~f~~iL~~~G~~~~ 850 (1250)
.+.+|+.+.+.++.+.++++|+.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 244 (245)
T 3c8f_A 217 KLDGVKPPKKETMERVKGILEQYGHKVM 244 (245)
T ss_dssp TTTTCCCCCHHHHHHHHHHHHTTTCCBC
T ss_pred ccccCCCCCHHHHHHHHHHHHhcCCeec
Confidence 3468899999999999999999853
No 64
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.87 E-value=2.4e-21 Score=221.18 Aligned_cols=175 Identities=33% Similarity=0.417 Sum_probs=147.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc-CeeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
.+.-.|+++|.||||||||+|+|++.+...+++.++||++.....+..+ +.++++|||||+.+... ...+.+.....+
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chhHHHHHHHHH
Confidence 3467899999999999999999999998889999999999999988888 99999999999976541 123444445566
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHHH-HHHHHHcCCcEEEEEeccccC-CccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDINI-ANFIYESGRSLIVCVNKWDSI-IHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~~-~~~~~~~~~p~iiv~NK~Dl~-~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
..+++.+|++++|+|++++.+.++..+ +..+.+.++|+++|+||+|+. +........+.+.+.+. .+.+++++||+
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~--~~~~i~~vSA~ 164 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP--ELTEIVPISAL 164 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT--TCCCEEECBTT
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc--CCCeEEEEeCC
Confidence 678899999999999999999999888 777877899999999999998 55555666666666553 35789999999
Q ss_pred CCCChHHHHHHHHHHHhhccc
Q psy17091 337 KLNNINSFMESINHVYDSSII 357 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~~~~ 357 (1250)
+|.|++++++.+.+.+++...
T Consensus 165 ~g~gv~~L~~~l~~~l~~~~~ 185 (308)
T 3iev_A 165 KGANLDELVKTILKYLPEGEP 185 (308)
T ss_dssp TTBSHHHHHHHHHHHSCBCCC
T ss_pred CCCCHHHHHHHHHHhCccCCC
Confidence 999999999999998876543
No 65
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.87 E-value=1.5e-21 Score=221.56 Aligned_cols=166 Identities=23% Similarity=0.326 Sum_probs=137.3
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+..+|+|+|+||||||||+|+|++.+..++++.|+||++.....+..++.++++|||||+.+.. ..++++....+..
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---SHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh---hHHHHHHHHHHHH
Confidence 3567999999999999999999999988888999999998888888889999999999997653 2345555566678
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHc--CCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYES--GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g 338 (1250)
+++.+|++++|+|++++.+..+..+++.+.+. ++|+++|+||+|+.+... ...+.++.. ..+.+++++||++|
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~---~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--EAMKAYHEL---LPEAEPRMLSALDE 157 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH--HHHHHHHHT---STTSEEEECCTTCH
T ss_pred HHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH--HHHHHHHHh---cCcCcEEEEeCCCC
Confidence 89999999999999999999888888888777 899999999999976433 022333332 34578999999999
Q ss_pred CChHHHHHHHHHHHhh
Q psy17091 339 NNINSFMESINHVYDS 354 (1250)
Q Consensus 339 ~gv~~l~~~i~~~~~~ 354 (1250)
.|++++++.+.+.+++
T Consensus 158 ~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 158 RQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHTTCCB
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999876543
No 66
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.86 E-value=6.5e-21 Score=195.73 Aligned_cols=160 Identities=34% Similarity=0.606 Sum_probs=126.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
+|+|+++|.+|||||||+|+|++.....+...+++|.+.....+.+++..+.+|||||+.... .+...+...+..++.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD--KWEKKIQEKVDRALE 78 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSS--SCCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCcc--chHHHHHHHHHHHHH
Confidence 479999999999999999999998876678889999999998899999999999999987532 122345666777889
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-hhHHhcCCCCcEecccccCCchhHHHHHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-LDFYELGIGNPHIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~ 160 (1250)
.+|++++|+|++++.+..+..+.++++..+.|+++|+||+|+.+.... .++...+..+++++||++|.|++++++.+.+
T Consensus 79 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWE 158 (161)
T ss_dssp TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHH
Confidence 999999999999888887778888888889999999999999765443 5555677767899999999999999999987
Q ss_pred hhC
Q psy17091 161 IEL 163 (1250)
Q Consensus 161 ~l~ 163 (1250)
.++
T Consensus 159 ~l~ 161 (161)
T 2dyk_A 159 RLP 161 (161)
T ss_dssp HCC
T ss_pred hCc
Confidence 653
No 67
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.86 E-value=3.1e-21 Score=210.07 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=136.3
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCc-ceeccCCCCcceeeEEEEEE-EcCeeEEEEecCCCCCCCcchhhHHHHH--HH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFE-YNNKKYILIDTAGIRRRNKTFEVIEKFS--VI 256 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~-~~~~~~~~gtT~~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~e~~~--~~ 256 (1250)
..++|+++|.+|||||||+|+|++.+ ...+++.+|+|++.....+. .++..+.||||||+..........+.+. ..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 46899999999999999999999987 46788999999987666554 4568999999999866533222233332 22
Q ss_pred HHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhcc------CCCCeE
Q psy17091 257 KTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF------LSFAMF 330 (1250)
Q Consensus 257 ~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~------~~~~~i 330 (1250)
..+.....+|++++|+|++++++..+..++.++.+.++|+++|+||+|+.+........+.+.+.+.. ....++
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 187 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTV 187 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeE
Confidence 33344455899999999999999999999999998999999999999998765554445555444433 356789
Q ss_pred EEeecCCCCChHHHHHHHHHHHhhc
Q psy17091 331 NFISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 331 v~iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
+++||++|.|+++++++|.+.+...
T Consensus 188 ~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 188 QLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred EEeecCCCcCHHHHHHHHHHhcCcc
Confidence 9999999999999999998887543
No 68
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=4.3e-21 Score=217.74 Aligned_cols=163 Identities=27% Similarity=0.422 Sum_probs=138.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|+||||||||+|+|++.+.+++++.|++|++...+...+++.++.||||||+.... +.+.+.+...+..+++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~-~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM-DALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC-SHHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh-hHHHHHHHHHHHHHHhc
Confidence 47999999999999999999999988889999999999888888889999999999987543 45666778888899999
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhc--CCCEEEEEeCCCCCCCcc-chhHH-h-cCCCCcEecccccCCchhHHHHH
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKS--GQPIVLVINKSENINSSI-SLDFY-E-LGIGNPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~--~~p~ilv~NK~D~~~~~~-~~~~~-~-~~~~~~~~iSA~~g~gi~~L~~~ 157 (1250)
+|++++|+|++++.+..+..+.+.++.. +.|+++|+||+|+..... ..+.. . .++.+++++||++|.|++++++.
T Consensus 87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~ 166 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKAD 166 (301)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHH
Confidence 9999999999988888777777888776 899999999999976554 31111 1 34556899999999999999999
Q ss_pred HHHhhCCcc
Q psy17091 158 ILTIELPYK 166 (1250)
Q Consensus 158 i~~~l~~~~ 166 (1250)
+.+.+++..
T Consensus 167 l~~~l~~~~ 175 (301)
T 1wf3_A 167 LLALMPEGP 175 (301)
T ss_dssp HHTTCCBCC
T ss_pred HHHhcccCC
Confidence 998876543
No 69
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.85 E-value=3.1e-21 Score=201.12 Aligned_cols=161 Identities=24% Similarity=0.334 Sum_probs=126.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+..+|+++|.+|||||||+|+|.+.....+++.+++|++.....+.+++.++.+|||||+.+.. ...+.+...+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS---DEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS---SHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch---hHHHHHHHHHHHH
Confidence 3589999999999999999999998776778899999999888999999999999999997643 2233333444556
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHc---CCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYES---GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~ 337 (1250)
+++.+|++++|+|+++..+..+..++..+.+. ++|+++|+||+|+.+.... +......+++++||++
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~----------~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG----------MSEVNGHALIRLSART 149 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE----------EEEETTEEEEECCTTT
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh----------hhhccCCceEEEeCCC
Confidence 78999999999999998777666776666653 6899999999998643110 0111246899999999
Q ss_pred CCChHHHHHHHHHHHhh
Q psy17091 338 LNNINSFMESINHVYDS 354 (1250)
Q Consensus 338 g~gv~~l~~~i~~~~~~ 354 (1250)
|.|++++++++.+.+..
T Consensus 150 g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999877643
No 70
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.85 E-value=4.4e-20 Score=214.88 Aligned_cols=297 Identities=10% Similarity=0.047 Sum_probs=193.3
Q ss_pred HHHHHHh-CCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC--CCC
Q psy17091 838 FAKILMN-SGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY--DGP 914 (1250)
Q Consensus 838 f~~iL~~-~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~--~~P 914 (1250)
|.+.+.. .|+...|.+|. ...+ -.+++++.+. +.|||+.++.+.-.+.+...++ ++|
T Consensus 114 w~~~~~~~~~~~~eV~tp~---~~~~---~~SGH~d~~~--------------~~LRPeTaqg~~~nfk~~~~s~r~~LP 173 (459)
T 3ikl_A 114 WWTSVVVFREQVFPVDALH---HKPG---PLLPGDSAFR--------------GGLRENLLHGALEHYVNCLDLVNKRLP 173 (459)
T ss_dssp HHHHHTTSSCSCEECCCCS---BCCS---CCCSSCSCCT--------------TB-CSCSHHHHHHHTTTTTGGGTTBSS
T ss_pred HHHHHhhccCceEeecccc---cccc---ccCcchhhhc--------------ceECCCCChhHHHHHhhhhhhccccCC
Confidence 4444443 67665788887 1112 1456665433 8899999998877666543322 789
Q ss_pred eeEEEEeceeecCC----CCCC--CCCceEEeeEEEecCCCchhc--hHHHHHHHHHHHHCCCCceEEEeCCCcChhhHH
Q psy17091 915 KRLWYSGPMFRHER----PQYG--RYRQFYQIGVEAIGFPGPDID--AELIIMCSRLWKNLNLKNICLELNSIGNFNERK 986 (1250)
Q Consensus 915 ~r~yy~g~VfR~e~----~~~g--r~REf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~~~ 986 (1250)
++++++|++||+|. ++.| |.|||+|..+++|..++...+ ..++..+.+++..||++...+++....- +.
T Consensus 174 ~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~~~~~r~~~~~~-ee-- 250 (459)
T 3ikl_A 174 YGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQD-EE-- 250 (459)
T ss_dssp EEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSSGGGEEEEEECC-SS--
T ss_pred eEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCChhhEEEeecCc-hH--
Confidence 99999999999994 3444 999999999999998765443 4667778899999999643333332110 00
Q ss_pred HHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhCCceEEE
Q psy17091 987 KYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKI 1066 (1250)
Q Consensus 987 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~gi~i~~ 1066 (1250)
..+. .++.+.+
T Consensus 251 --------A~~~-------------------------------------------------------------~DiE~~~ 261 (459)
T 3ikl_A 251 --------GRKG-------------------------------------------------------------NKLYYNF 261 (459)
T ss_dssp --------SSCE-------------------------------------------------------------EEEEEEC
T ss_pred --------HHhh-------------------------------------------------------------cCeEEEc
Confidence 0000 0000000
Q ss_pred eCCCCCCCCCCcceEEEEEECCCCCC---cceeecccchHHHHhcC-CCCCCeE-EEEEeHHHHHHHHHHc---------
Q psy17091 1067 NTKLVRGMDYYNRTVFEWTTDKLGSQ---NSICGGGRYDFLIKKFS-NKFVPAS-GFAIGIERLIELIKKI--------- 1132 (1250)
Q Consensus 1067 D~~~~~~~~YYtG~vFe~~~~~~~~~---~~i~~GGRYD~L~~~fg-~~~~pav-Gfsi~lerl~~~l~~~--------- 1132 (1250)
.. | -|-+..+ .+..... ....+|-+|. ..-| ..-.|.+ ..++|++|++.++.+.
T Consensus 262 p~----G----~~E~~g~-sn~tDfqL~~~~~~~~~~~~---~~dg~~k~~P~vi~~s~Gv~R~~~AiLe~~~de~~~~~ 329 (459)
T 3ikl_A 262 PW----G----KELIETL-WNLGDHELLHMYPGNVSKLH---GRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSF 329 (459)
T ss_dssp SS----C----EEEEEEE-EEEETHHHHHHSCSCSSSSC---CBSSSCBCCCEEEEEEEEHHHHHHHHHHTTCC------
T ss_pred CC----c----eEEEeee-eccchhhhhccccccCceeE---ccCCCeeeeeEEEEecccHHHHHHHHHHHHhhhccccc
Confidence 00 0 0000000 0000000 0000000010 0001 1124554 8899999988777653
Q ss_pred ----------cCCCCCCCCceEEEEEcC---hHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEE
Q psy17091 1133 ----------NINHNFSHQCDIYIVHVG---KEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFA 1199 (1250)
Q Consensus 1133 ----------~~~~~~~~~~~v~V~~~~---~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~ 1199 (1250)
..||.+.+|++|.|+... ++...+|.+++++|+++||+|+.+++ +..+.+++++|++|++.|+||+
T Consensus 330 ~~~~~~~R~vl~lP~~LAP~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~D-dr~~~siGkK~r~Ad~iGiPy~ 408 (459)
T 3ikl_A 330 TRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYL-ETMQSSLEQLYSKYDEMSILFT 408 (459)
T ss_dssp -------CCCCCCCTTTCSCCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEECGGG-SSSCCTTHHHHHHHGGGTCSEE
T ss_pred cccccccceEEEeCcccCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEeec-CCcCCCHHHHHHHHHHcCCCEE
Confidence 468999999999999332 56788999999999999999994333 1114789999999999999999
Q ss_pred EEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHH
Q psy17091 1200 AIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 1245 (1250)
Q Consensus 1200 viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~ 1245 (1250)
||||++|+++|+|+||+|+++ ++..|++++++++|++.+.
T Consensus 409 IiVG~kEle~g~VtVR~Rdtg------eq~~v~ldeli~~l~~~i~ 448 (459)
T 3ikl_A 409 VLVTETTLENGLIHLRSRDTT------MKEMMHISKLKDFLIKYIS 448 (459)
T ss_dssp EEECTTSTTSSEEEEEETTTC------CCCCEETTHHHHHHHHHHH
T ss_pred EEECchhhhCCEEEEEECCCC------ceEEEEHHHHHHHHHHHHh
Confidence 999999999999999999999 9999999999999999884
No 71
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.85 E-value=2.9e-20 Score=197.71 Aligned_cols=169 Identities=21% Similarity=0.268 Sum_probs=124.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCc-ceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
..++|+++|.+|||||||+|+|++.. ....++.+|+|.+.....+ +.++.+|||||+..........+.+... ..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~ 97 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRM-IE 97 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHH-HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHH-HH
Confidence 46999999999999999999999876 4556788899887654433 4589999999986654433334444322 12
Q ss_pred Hhhcc---CcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 260 KSILE---ANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 260 ~~~~~---ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
.+++. +|++++|+|++++.+..+..++.++.+.+.|+++|+||+|+.+........+++.+.+......+++++||+
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSE 177 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTT
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEcc
Confidence 33344 499999999999999999988899888899999999999998876666666677776665556799999999
Q ss_pred CCCChHHHHHHHHHHHh
Q psy17091 337 KLNNINSFMESINHVYD 353 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~ 353 (1250)
+|.|++++++++.+.+.
T Consensus 178 ~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 178 TKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999987653
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.84 E-value=6.1e-22 Score=214.89 Aligned_cols=201 Identities=19% Similarity=0.188 Sum_probs=126.6
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCccee-ccCCCCcceeeEEEEEEEcC---eeEEEEecCCCCCCCcchhhHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVI-TYDTPGTTRDSIKSLFEYNN---KKYILIDTAGIRRRNKTFEVIEKFSV 255 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~e~~~~ 255 (1250)
...+||+++|.+|||||||+|+|++..... ..+..+++... ..+...+ ..+.+|||||+.+.....
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------- 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHP--VTFLDDQGNVIKFNVWDTAGQEKKAVLK-------- 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEE--EEEEBTTSCEEEEEEEEECSGGGTSCCC--------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEE--EEEEeCCCcEEEEEEEecCCchhhchHH--------
Confidence 347999999999999999999999765322 22333333322 2222222 568999999985443211
Q ss_pred HHHHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEE
Q psy17091 256 IKTLKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFN 331 (1250)
Q Consensus 256 ~~~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv 331 (1250)
..+++.+|++++|+|++++.+.++.. ++..+.. .++|+++|+||+|+.+..... .+....... ....+++
T Consensus 79 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~-~~~~~~~ 152 (218)
T 4djt_A 79 ---DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS--KKLVMEVLK-GKNYEYF 152 (218)
T ss_dssp ---HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC--HHHHHHHTT-TCCCEEE
T ss_pred ---HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC--HHHHHHHHH-HcCCcEE
Confidence 23567899999999999875554442 2333332 478999999999997642221 122223322 3347899
Q ss_pred EeecCCCCChHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCcccccccceeeccccCCCCCCc
Q psy17091 332 FISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPI 399 (1250)
Q Consensus 332 ~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~pp~ 399 (1250)
++||++|.|++++++++.+.+........++.++.++.+++...++|...+ +++|++|+.++||+
T Consensus 153 ~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~q~~~~pp~ 217 (218)
T 4djt_A 153 EISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEESK---YIDYMEQASKMAPE 217 (218)
T ss_dssp EEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCCCCBCCCCCCCCCC---------------------
T ss_pred EEecCCCCCHHHHHHHHHHHHhcccccccccccCcCCCccccCccCchhhh---hHHHHHHHhccCCC
Confidence 999999999999999999999998888888888888777777777676533 68899999999997
No 73
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.84 E-value=5.5e-20 Score=195.24 Aligned_cols=171 Identities=21% Similarity=0.263 Sum_probs=136.5
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHH--HHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSV--IKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~--~~~ 258 (1250)
..++|+++|.+|||||||+|+|++......++.+|+|.+..... .+.++.+|||||+..........+.+.. ...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 35899999999999999999999988777788999988764332 3568999999997554333223333332 222
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCC
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g 338 (1250)
......+|++++|+|++.+.+..+..++.++.+.+.|+++|+||+|+.+........+.+.+.+......+++++||++|
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 178 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTG 178 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTC
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCC
Confidence 33334569999999999999999999999999999999999999999877777777777777777666789999999999
Q ss_pred CChHHHHHHHHHHHhh
Q psy17091 339 NNINSFMESINHVYDS 354 (1250)
Q Consensus 339 ~gv~~l~~~i~~~~~~ 354 (1250)
.|++++++++.+.+.+
T Consensus 179 ~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 179 EGISELLDLISTLLKE 194 (195)
T ss_dssp TTHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999887643
No 74
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.84 E-value=6.7e-21 Score=225.89 Aligned_cols=306 Identities=10% Similarity=0.086 Sum_probs=193.2
Q ss_pred hCCCeEEEeccCccchHHhhhhcCCcc---ccccccc----------eeeeccccCCcccccCCCCcHHHHHHHHHcCC-
Q psy17091 844 NSGIFVTIRKIRGNDINAACGQLSGEE---TDIVKKE----------MYSFIDELNGDNLSLRPEGTASVIRSVIENNL- 909 (1250)
Q Consensus 844 ~~G~~~~ir~~~g~~i~~acgql~~~~---~~~~~~~----------~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~- 909 (1250)
+.|+. .|.+|...+...+-+. ...+ ++.+.++ |+.++....++.+.|||+.++.+...+.+...
T Consensus 80 ~~g~~-ev~tp~l~~~~~~~~s-~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~~f~~~~~s 157 (454)
T 1g5h_A 80 REQVF-AVDSLHQEPGSSQPRD-SAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALEHYVNCLDL 157 (454)
T ss_dssp CTTEE-ECCCCSEECCCCSSCC-CCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECSCSHHHHHHTHHHHHHH
T ss_pred cCCeE-EEEcCccCChhhcccc-ccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecccccHHHHHHHhhhHhh
Confidence 56766 6777876655543321 0112 3444333 55442111235789999999888877665321
Q ss_pred -CCCCCeeEEEEeceee---cC-CCCCC--CCCceEEeeEEEecCCCchhc--hHHHHHHHHHHHHCCCCceEEEeCCCc
Q psy17091 910 -IYDGPKRLWYSGPMFR---HE-RPQYG--RYRQFYQIGVEAIGFPGPDID--AELIIMCSRLWKNLNLKNICLELNSIG 980 (1250)
Q Consensus 910 -~~~~P~r~yy~g~VfR---~e-~~~~g--r~REf~Q~g~eiig~~~~~ad--aEvi~l~~~~l~~lgl~~~~i~i~~~~ 980 (1250)
..++|++++++|++|| +| ++..| |.|||+|.++++|+..+...+ ..++..+.+++..||++...++.....
T Consensus 158 ~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~~~ 237 (454)
T 1g5h_A 158 VNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQ 237 (454)
T ss_dssp TTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCSSGGGEEEEEEE
T ss_pred cccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeCHhhHHHHHHHHHHHHHHHHHHcCCCceeEEecCCH
Confidence 1269999999999999 57 44444 999999999999986432221 234677788999999964444432110
Q ss_pred ChhhHHHHHHHHHHHHHhccCchhhhHHHHHHhhhccccccccccHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHhhC
Q psy17091 981 NFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYN 1060 (1250)
Q Consensus 981 i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~l~~~ 1060 (1250)
+.. .. . ..
T Consensus 238 --~~~------------a~--~--------------------------------------------------------~~ 245 (454)
T 1g5h_A 238 --DEL------------GR--K--------------------------------------------------------GS 245 (454)
T ss_dssp --CTT------------SC--E--------------------------------------------------------EE
T ss_pred --HHH------------Hh--c--------------------------------------------------------CC
Confidence 000 00 0 00
Q ss_pred CceEEEeCCCCCCCCCCcceEEEEEECCCCCCccee---ecccchHHHHhc-CC-CCCCeE-EEEEeHHHHHHHHHHc--
Q psy17091 1061 NISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSIC---GGGRYDFLIKKF-SN-KFVPAS-GFAIGIERLIELIKKI-- 1132 (1250)
Q Consensus 1061 gi~i~~D~~~~~~~~YYtG~vFe~~~~~~~~~~~i~---~GGRYD~L~~~f-g~-~~~pav-Gfsi~lerl~~~l~~~-- 1132 (1250)
++.+.+. +..|- |+...+.... .+. .+.|+|- .-. ++ ...|.| +.++|++|++.++.+.
T Consensus 246 ~ie~~~p--------~g~~e-~~g~~~~td~--~l~~~~~~s~~~l--~y~d~~~~~~P~vi~~s~Gv~R~i~aile~~~ 312 (454)
T 1g5h_A 246 KLYYSFP--------WGKEP-IETLWNLGDQ--ELLHTYPGNVSTI--QGRDGRKNVVPCVLSVSGDVDLGTLAYLYDSF 312 (454)
T ss_dssp EEEEEET--------TEEEE-EEEEEEEESH--HHHHHSTTCGGGS--CEEETTEEECCEEEEEEEEHHHHHHHHHHHHE
T ss_pred CcEEecC--------CCceE-EEEecCCCHH--HHHhccCCceeeE--EEECCCCcEeeEEEeCcccHHHHHHHHHHHhc
Confidence 0000000 00000 0000000000 000 0000100 000 11 235777 8899999998665542
Q ss_pred ---------c--------CCCCCCCCceEEEE-EcC--hHHHHHHHHHHHHHHHcCCEEE--EeeccccccccHHHHHHH
Q psy17091 1133 ---------N--------INHNFSHQCDIYIV-HVG--KEAELKAFVLSENLRTLGLKVI--LNCVFNNIHESFKSQMKR 1190 (1250)
Q Consensus 1133 ---------~--------~~~~~~~~~~v~V~-~~~--~~~~~~a~~~a~~Lr~~gi~v~--~~~~~~~~~~s~~~~~~~ 1190 (1250)
| .||.+.+|++|+|+ +.+ ++...+|.+++++||++|++|+ +|++ .+.++++++++
T Consensus 313 ~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v~~~~Ddr---~~~sigkk~r~ 389 (454)
T 1g5h_A 313 QLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSET---VHSSLEQLHSK 389 (454)
T ss_dssp EC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSC---CCSCHHHHHHH
T ss_pred chhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCC---CCCCHHHHHHH
Confidence 3 78999999999999 776 6688899999999999999996 5542 14789999999
Q ss_pred HHHcCCCEEEEEccCcccCCeEEEEEcCCCCCCCCCcceeeehHHHHHHHHHHHH
Q psy17091 1191 ANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKII 1245 (1250)
Q Consensus 1191 A~~~gip~~viig~~e~~~g~v~vk~~~~~~~~~~~~e~~v~~~el~~~l~~~i~ 1245 (1250)
|++.|+||+||||++|+++|+|+||+|+++ ++..|++++++++|.+.+.
T Consensus 390 Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~------eq~~v~l~el~~~l~~~l~ 438 (454)
T 1g5h_A 390 YDEMSVLFSVLVTETTLENGLIQLRSRDTT------MKEMMHISKLRDFLVKYLA 438 (454)
T ss_dssp HHHTTCSEEEEECHHHHHHCEEEEEETTTC------CEEEEETTSHHHHHHHHHH
T ss_pred HHHcCCCEEEEECcchhhCCEEEEEECCCC------cEEEEEHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 9999999999999988764
No 75
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.83 E-value=5.3e-22 Score=231.68 Aligned_cols=241 Identities=24% Similarity=0.244 Sum_probs=169.7
Q ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hh-----HHhcCC--CC
Q psy17091 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LD-----FYELGI--GN 139 (1250)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~-----~~~~~~--~~ 139 (1250)
.+.+....+...++++++|+|+++.......++.+++. ++|+++|+||+|+...... .+ +...|. .+
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~ 137 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVD 137 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSE
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCccc
Confidence 45555556668899999999999865444444555543 7899999999999765321 11 224455 36
Q ss_pred cEecccccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCC-----cceeccCCC
Q psy17091 140 PHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGE-----NRVITYDTP 214 (1250)
Q Consensus 140 ~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~-----~~~~~~~~~ 214 (1250)
++.+||++|.|+++|++.+.+... ..+|+++|.||||||||+|+|++. ....+++.|
T Consensus 138 v~~iSA~~g~gi~~L~~~I~~~~~------------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~ 199 (369)
T 3ec1_A 138 VCLVSAAKGIGMAKVMEAINRYRE------------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP 199 (369)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHT------------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc------------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC
Confidence 799999999999999999876431 245999999999999999999986 567778999
Q ss_pred CcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh---ccCcEEEEEecCCCCCCHHHHHHHHHHHH
Q psy17091 215 GTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI---LEANVVILLLDAQQNISAQDINIANFIYE 291 (1250)
Q Consensus 215 gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~---~~ad~vllviD~~~~~~~~d~~~~~~~~~ 291 (1250)
|||++.....+ +..+.++||||+.+.......+.. ..+..+ +..|.+++++|+.+.+...+...+..+..
T Consensus 200 gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~----~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~ 272 (369)
T 3ec1_A 200 GTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVDA----RDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKG 272 (369)
T ss_dssp TSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSCT----TTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES
T ss_pred CeEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHhH----HHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccC
Confidence 99998765432 345899999999876533322221 122333 67899999999954321122222344445
Q ss_pred cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChH
Q psy17091 292 SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (1250)
Q Consensus 292 ~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~ 342 (1250)
.+.|+++++||+|.+.....+...+.+++.++. ++.+.++....++.
T Consensus 273 ~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~----~l~p~~~~~~~~~~ 319 (369)
T 3ec1_A 273 GRRSFVCYMANELTVHRTKLEKADSLYANQLGE----LLSPPSKRYAAEFP 319 (369)
T ss_dssp SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT----TBCSSCGGGTTTCC
T ss_pred CCceEEEEecCCcccccccHHHHHHHHHHhcCC----ccCCCCchhhhhcc
Confidence 678999999999999877777777777777762 44455666555543
No 76
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=6.6e-20 Score=209.26 Aligned_cols=164 Identities=30% Similarity=0.466 Sum_probs=138.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC-CEEEEEEecCCCCcch-hhHHHHHHHHHHHHHhh
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-KKSFIIIDTGGFEPEV-KKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~~ 81 (1250)
.|+++|+||||||||+|+|++.+.+++++.+++|++...+..... +.++.||||||+.... ...+.+.+...+..++.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~ 91 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLE 91 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhh
Confidence 799999999999999999999998889999999999999999998 9999999999986432 13566678888889999
Q ss_pred cCCEEEEEEeCCCCCChhhHHH-HHHHHhcCCCEEEEEeCCCCC-CCccc----hhHHh-c-CCCCcEecccccCCchhH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLI-TNFLRKSGQPIVLVINKSENI-NSSIS----LDFYE-L-GIGNPHIISALYGNGIKN 153 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~-~~~l~~~~~p~ilv~NK~D~~-~~~~~----~~~~~-~-~~~~~~~iSA~~g~gi~~ 153 (1250)
.+|++++|+|++++.+..+..+ .+.++..+.|+++|+||+|+. +.... .++.. . .+.+++++||++|.|+++
T Consensus 92 ~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~ 171 (308)
T 3iev_A 92 EADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDE 171 (308)
T ss_dssp HCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHH
T ss_pred cCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHH
Confidence 9999999999998888777666 788888889999999999997 33333 22222 2 345789999999999999
Q ss_pred HHHHHHHhhCCccc
Q psy17091 154 FLENILTIELPYKK 167 (1250)
Q Consensus 154 L~~~i~~~l~~~~~ 167 (1250)
+++.+.+.+++...
T Consensus 172 L~~~l~~~l~~~~~ 185 (308)
T 3iev_A 172 LVKTILKYLPEGEP 185 (308)
T ss_dssp HHHHHHHHSCBCCC
T ss_pred HHHHHHHhCccCCC
Confidence 99999999876543
No 77
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=2.3e-20 Score=224.10 Aligned_cols=163 Identities=30% Similarity=0.455 Sum_probs=119.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
.+|+|+|+||||||||+|+|++...+++++.||+|+|.....+.+++..+.+|||||+.... .+.++......+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP--QDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSG--GGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccc--cchHHHHHHHHHHHHH
Confidence 37999999999999999999998888889999999999999999999999999999996532 1112222334566788
Q ss_pred ccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHH-HHHhccCCCCeEEEeecCCCCCh
Q psy17091 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNI-KKKLNFLSFAMFNFISAIKLNNI 341 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l-~~~l~~~~~~~iv~iSA~~g~gv 341 (1250)
+.||++++|+|++.+++..+..+..++.+.++|+++|+||+|+.+. .. ... .+.. ..+..+++++||++|.|+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~--~~---~~~~~~~~-~lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE--FE---REVKPELY-SLGFGEPIPVSAEHNINL 153 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH--HH---HHTHHHHG-GGSSCSCEECBTTTTBSH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc--cH---HHHHHHHH-hcCCCCEEEEeccCCCCH
Confidence 9999999999999999999999999888889999999999998532 01 111 2222 233446899999999999
Q ss_pred HHHHHHHHHHHh
Q psy17091 342 NSFMESINHVYD 353 (1250)
Q Consensus 342 ~~l~~~i~~~~~ 353 (1250)
++|++++.+.+.
T Consensus 154 ~~L~~~i~~~l~ 165 (439)
T 1mky_A 154 DTMLETIIKKLE 165 (439)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999987764
No 78
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.83 E-value=1.4e-20 Score=211.24 Aligned_cols=183 Identities=17% Similarity=0.216 Sum_probs=138.6
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcch--hhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF--EVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~--~~~e~~~~~~~~ 259 (1250)
.++|+++|.+|||||||+|+|+|.+ ..++++||+|.+.....+.+++.++.+|||||+.+..... ..+++. ..+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~-i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ-IACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHH-HHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHH-HHHHH
Confidence 5899999999999999999999987 5778999999999999999999999999999998765211 112222 22233
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCC
Q psy17091 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~ 339 (1250)
...+.+|++++|+|+++. +....+..++.+.++|+++|+||+|+.+........+.+.+.++ .|++++||++|.
T Consensus 81 ~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg----~~~i~~SA~~g~ 154 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLG----CPVIPLVSTRGR 154 (274)
T ss_dssp HHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHT----SCEEECCCGGGH
T ss_pred HhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcC----CCEEEEEcCCCC
Confidence 344799999999999984 67778888888999999999999999754332223345555554 689999999999
Q ss_pred ChHHHHHHHHHHHhhccc--ccChhHHHHHHHHHH
Q psy17091 340 NINSFMESINHVYDSSII--HLSTSRITRALISAI 372 (1250)
Q Consensus 340 gv~~l~~~i~~~~~~~~~--~~~~~~l~~~l~~~~ 372 (1250)
|++++++++.+.+..... ......+...+....
T Consensus 155 gi~el~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~ 189 (274)
T 3i8s_A 155 GIEALKLAIDRYKANENVELVHYAQPLLNEADSLA 189 (274)
T ss_dssp HHHHHHHHHHTCCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcccCCCHHHHHHHHHHH
Confidence 999999999887764421 123344555444443
No 79
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.83 E-value=3.7e-20 Score=192.96 Aligned_cols=159 Identities=26% Similarity=0.293 Sum_probs=121.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|++|||||||+|+|++...+.+++.+++|++.....+.+++..+.+|||||+.... ..+..........+++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS-DEVERIGIERAWQEIEQ 83 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS-SHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch-hHHHHHHHHHHHHHHHh
Confidence 48999999999999999999998776688899999999999999999999999999986432 12222222334456899
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhc---CCCEEEEEeCCCCCCCccchhHHhcCCCCcEecccccCCchhHHHHHHH
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKS---GQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENIL 159 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~---~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~ 159 (1250)
+|++++|+|++++.+..+..+...+... ++|+++|+||+|+.+.... +......+++++||++|.|++++++.+.
T Consensus 84 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 161 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG--MSEVNGHALIRLSARTGEGVDVLRNHLK 161 (172)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--EEEETTEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh--hhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 9999999999887665555555555542 5899999999998543211 1112223679999999999999999998
Q ss_pred HhhCC
Q psy17091 160 TIELP 164 (1250)
Q Consensus 160 ~~l~~ 164 (1250)
+.+..
T Consensus 162 ~~~~~ 166 (172)
T 2gj8_A 162 QSMGF 166 (172)
T ss_dssp HHC--
T ss_pred HHhhh
Confidence 87643
No 80
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.83 E-value=7.5e-20 Score=200.01 Aligned_cols=173 Identities=20% Similarity=0.221 Sum_probs=120.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|+|++.... +++.+++|++.....+.+++..+.+|||||+.+..........+.... .
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~--~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT--A 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHH--H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHH--H
Confidence 4689999999999999999999987654 568899999988888888889999999999965432111111122222 2
Q ss_pred hhccCcEEEEEecCCCCCC---HHHHHHHHHHHHc--CCcEEEEEeccccCCccchH-HHHHHHHHHhccC-CCCeEEEe
Q psy17091 261 SILEANVVILLLDAQQNIS---AQDINIANFIYES--GRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFL-SFAMFNFI 333 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~---~~d~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~-~~~~iv~i 333 (1250)
....+|++++|+|+++..+ ..+..++..+... ++|+++|+||+|+.+..... ...+.+....... ...+++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 3578899999999998765 3344566666664 89999999999998654332 2222233332222 12689999
Q ss_pred ecCCCCChHHHHHHHHHHHhhcc
Q psy17091 334 SAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
||++|.|++++++++.+.+....
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988876443
No 81
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.83 E-value=1.4e-20 Score=225.68 Aligned_cols=161 Identities=37% Similarity=0.552 Sum_probs=132.7
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCC-CCCcchhhHHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIR-RRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~e~~~~~~~~~ 260 (1250)
.++|+|+|.||||||||+|+|++.++.+++++||||+|.....+.+++.++.+|||||+. +.. +.+|.+...+++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~---~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN---DLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC---TTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccch---hhHHHHHHHHHHH
Confidence 589999999999999999999998888899999999999999999999999999999997 443 2334444455667
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
+++.+|++++|+|++++.+.++..+++.+ .++|+++|+||+|+.+.... +++.+.+. ...+++++||++|.|
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~----~~~~~~~~--~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINE----EEIKNKLG--TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCH----HHHHHHHT--CSTTEEEEEGGGTCC
T ss_pred HhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCH----HHHHHHhc--CCCcEEEEECCCCCC
Confidence 88999999999999999888888877665 47999999999999754222 22333332 236899999999999
Q ss_pred hHHHHHHHHHHHh
Q psy17091 341 INSFMESINHVYD 353 (1250)
Q Consensus 341 v~~l~~~i~~~~~ 353 (1250)
+++|++++.+.+.
T Consensus 392 i~eL~~~l~~~~~ 404 (482)
T 1xzp_A 392 LEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 82
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.82 E-value=4.2e-20 Score=189.65 Aligned_cols=159 Identities=29% Similarity=0.441 Sum_probs=118.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
.||+++|.+|||||||+|+|.+......++.+++|.+.....+.+++..+.+|||||+...... ..........++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKW----EKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSC----CHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccch----HHHHHHHHHHHH
Confidence 5899999999999999999998876667789999999988889999999999999999764311 111122334677
Q ss_pred ccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChH
Q psy17091 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~ 342 (1250)
+.+|++++|+|++++.+..+..+..++.+.+.|+++|+||+|+.+... ++.+.. ..+..+++++||++|.|++
T Consensus 78 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL------YLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp TTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG------GCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred HhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH------hHHHHH-hCCCCCeEEEecccCCChH
Confidence 899999999999999898888888888888999999999999975421 112222 2334479999999999999
Q ss_pred HHHHHHHHHH
Q psy17091 343 SFMESINHVY 352 (1250)
Q Consensus 343 ~l~~~i~~~~ 352 (1250)
++++++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999987654
No 83
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=1.3e-20 Score=226.06 Aligned_cols=162 Identities=30% Similarity=0.408 Sum_probs=103.8
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
..++|+|+|.||||||||+|+|++.+...+++++|||+|.....+.+++.++.+|||||+.+.. +.++.+...++..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~---~~ve~~gi~~~~~ 308 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG---EEIEHEGIRRSRM 308 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-----------------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch---hHHHHHHHHHHHh
Confidence 3689999999999999999999998888899999999999999999999999999999996643 4456666667778
Q ss_pred hhccCcEEEEEecCCCCCCH----HHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecC
Q psy17091 261 SILEANVVILLLDAQQNISA----QDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAI 336 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~----~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~ 336 (1250)
+++.+|++++|+|++++.+. .+..++..+. ++|+++|+||+|+.+...... +.+.+. .+.+++++||+
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSAk 380 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISAL 380 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBTT
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEEC
Confidence 89999999999999998887 4555555443 799999999999986543321 333333 12689999999
Q ss_pred CCCChHHHHHHHHHHHh
Q psy17091 337 KLNNINSFMESINHVYD 353 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~ 353 (1250)
+|.|++++++++.+.+.
T Consensus 381 tg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTBSHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988876
No 84
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.82 E-value=6.2e-22 Score=230.75 Aligned_cols=229 Identities=23% Similarity=0.253 Sum_probs=154.9
Q ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hh-----HHhcCCC--C
Q psy17091 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LD-----FYELGIG--N 139 (1250)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~-----~~~~~~~--~ 139 (1250)
++.+....+.+.+|++++|+|+++........+.+++ .++|+++|+||+|+...... .+ +...|.. +
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~ 135 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPED 135 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSE
T ss_pred HHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCccc
Confidence 5666666667788899999999863211112222322 37899999999999765421 11 2244553 6
Q ss_pred cEecccccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCc------ceeccCC
Q psy17091 140 PHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGEN------RVITYDT 213 (1250)
Q Consensus 140 ~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~------~~~~~~~ 213 (1250)
++.+||++|.|+++|++.+.+... ..+|+++|.+|||||||+|+|++.. ...+++.
T Consensus 136 v~~iSA~~g~gi~~L~~~l~~~~~------------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~ 197 (368)
T 3h2y_A 136 VFLISAAKGQGIAELADAIEYYRG------------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHF 197 (368)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT------------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECC
T ss_pred EEEEeCCCCcCHHHHHhhhhhhcc------------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCC
Confidence 789999999999999999876431 2469999999999999999999753 4457899
Q ss_pred CCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcC
Q psy17091 214 PGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESG 293 (1250)
Q Consensus 214 ~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~ 293 (1250)
||||++.....+ +..+.++||||+.+.....+.+.... ..........+.+++++|+.+.....+...+..+...+
T Consensus 198 ~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~~~-l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~ 273 (368)
T 3h2y_A 198 PGTTLDLIDIPL---DEESSLYDTPGIINHHQMAHYVGKQS-LKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGR 273 (368)
T ss_dssp C----CEEEEES---SSSCEEEECCCBCCTTSGGGGSCHHH-HHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSS
T ss_pred CCeecceEEEEe---cCCeEEEeCCCcCcHHHHHHHhhHHH-HHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCC
Confidence 999998765432 33489999999987654333222211 11222246788999999985432222322344444567
Q ss_pred CcEEEEEeccccCCccchHHHHHHHHHHhc
Q psy17091 294 RSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323 (1250)
Q Consensus 294 ~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~ 323 (1250)
.|+++++||+|.+.....+...+.+++.++
T Consensus 274 ~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 274 RAFTCHFSNRLTIHRTKLEKADELYKNHAG 303 (368)
T ss_dssp EEEEEEECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred ceEEEEecCccccccccHHHHHHHHHHHhC
Confidence 899999999999988777777777777776
No 85
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=2.5e-20 Score=206.57 Aligned_cols=161 Identities=22% Similarity=0.275 Sum_probs=127.3
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchh--hHHHHHHHHHHH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFE--VIEKFSVIKTLK 260 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~--~~e~~~~~~~~~ 260 (1250)
.+|+++|.||||||||+|+|+|.+ ..++++||+|.+.....+.+++..+.+|||||+.+...... ..++... +..-
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~-~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIA-AQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHH-HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHH-HHHH
Confidence 479999999999999999999975 56779999999999999999999999999999977642100 1222211 1111
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
..+.+|++++|+|+++. +.+..+..++.+.++|+++|+||+|+.+........+.+.+.++ +|++++||++|.|
T Consensus 80 ~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg----~~vi~~SA~~g~g 153 (256)
T 3iby_A 80 IDLEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLG----CSVIPIQAHKNIG 153 (256)
T ss_dssp HHSCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHC----SCEEECBGGGTBS
T ss_pred hhCCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC----CCEEEEECCCCCC
Confidence 22789999999999984 77778888888899999999999999754433333445555554 6999999999999
Q ss_pred hHHHHHHHHHH
Q psy17091 341 INSFMESINHV 351 (1250)
Q Consensus 341 v~~l~~~i~~~ 351 (1250)
++++++++.+.
T Consensus 154 i~el~~~i~~~ 164 (256)
T 3iby_A 154 IPALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999877
No 86
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.82 E-value=8.1e-20 Score=202.91 Aligned_cols=163 Identities=26% Similarity=0.348 Sum_probs=128.0
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.||||||||+|+|++.... ++++||+|.+.....+.+++..+.+|||||+.+..... .++......+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~e~v~~~~~- 79 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS--IDEKIARDYL- 79 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS--HHHHHHHHHH-
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC--HHHHHHHHHH-
Confidence 4689999999999999999999997644 67899999999988998889999999999997664321 1221111111
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
....+|++++|+|+++. +....++..+.+.++|+++|+||+|+.+........+.+.+.++ +|++++||++|.|
T Consensus 80 ~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg----~~vi~~SA~~g~g 153 (258)
T 3a1s_A 80 LKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLG----IPVVFTSSVTGEG 153 (258)
T ss_dssp HHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC----SCEEECCTTTCTT
T ss_pred hhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcC----CCEEEEEeeCCcC
Confidence 12689999999999985 66677888888889999999999999754322222344555554 6899999999999
Q ss_pred hHHHHHHHHHHHh
Q psy17091 341 INSFMESINHVYD 353 (1250)
Q Consensus 341 v~~l~~~i~~~~~ 353 (1250)
++++++++.+...
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988765
No 87
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.81 E-value=1.4e-19 Score=187.26 Aligned_cols=159 Identities=27% Similarity=0.402 Sum_probs=113.9
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
.++|+++|.+|||||||+|+|++... .+++.|++|.+.....+.+++..+.+|||||+.+..... .++. .. ..+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~-~~--~~~ 76 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS--IDEI-IA--RDY 76 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS--HHHH-HH--HHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc--hhHH-HH--HHH
Confidence 57899999999999999999998653 456789999988888888889999999999997653211 1111 11 122
Q ss_pred h--ccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCC
Q psy17091 262 I--LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (1250)
Q Consensus 262 ~--~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~ 339 (1250)
+ ..+|++++|+|+++. ++...++..+.+.++|+++|+||+|+.+........+.+.+.++ .+++++||++|.
T Consensus 77 ~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~SA~~~~ 150 (165)
T 2wji_A 77 IINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG----VKVVPLSAAKKM 150 (165)
T ss_dssp HHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----SCEEECBGGGTB
T ss_pred HhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhC----CCEEEEEcCCCC
Confidence 2 479999999999874 44455666677779999999999998643221111233444443 589999999999
Q ss_pred ChHHHHHHHHHHH
Q psy17091 340 NINSFMESINHVY 352 (1250)
Q Consensus 340 gv~~l~~~i~~~~ 352 (1250)
|++++|+++.+.+
T Consensus 151 ~v~~l~~~l~~~~ 163 (165)
T 2wji_A 151 GIEELKKAISIAV 163 (165)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 9999999997654
No 88
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=8.6e-20 Score=202.30 Aligned_cols=155 Identities=29% Similarity=0.393 Sum_probs=122.9
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhh----HHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK----GIMHEMTKQTK 77 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~----~~~~~~~~~~~ 77 (1250)
+|+|+++|.+|||||||+|+|++.+ ..+++.||+|++...+.+.+++..+.+|||||+...... ...+.+.....
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999999986 458899999999999999999999999999999765421 33333333332
Q ss_pred HHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCchh
Q psy17091 78 QAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIK 152 (1250)
Q Consensus 78 ~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi~ 152 (1250)
. ...+|++++|+|+++ ......+..++...+.|+++|+||+|+...... ..+. .+|. +++++||++|.|++
T Consensus 80 ~-~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~-~vi~~SA~~g~gi~ 155 (256)
T 3iby_A 80 I-DLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGC-SVIPIQAHKNIGIP 155 (256)
T ss_dssp H-HSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCS-CEEECBGGGTBSHH
T ss_pred h-hCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCC-CEEEEECCCCCCHH
Confidence 2 278999999999987 444556777788889999999999998654432 2222 4555 78999999999999
Q ss_pred HHHHHHHHh
Q psy17091 153 NFLENILTI 161 (1250)
Q Consensus 153 ~L~~~i~~~ 161 (1250)
++++.+.+.
T Consensus 156 el~~~i~~~ 164 (256)
T 3iby_A 156 ALQQSLLHC 164 (256)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999999864
No 89
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.80 E-value=1.8e-19 Score=204.76 Aligned_cols=169 Identities=26% Similarity=0.327 Sum_probs=132.8
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCC-CCCcchhhHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIR-RRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~e~~~~~~~~ 259 (1250)
+..+|+|+|+||||||||+|+|++.+..++++.++||++.....+..++.++.+|||||+. .. ...+.......+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHHHH
Confidence 3468999999999999999999999888888999999998888888889999999999995 21 1122222222334
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCC
Q psy17091 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~ 339 (1250)
.+++.+|++++|+|+++ ++..+..+++.+...++|+++|+||+|+... .....+.+.+.....++.+++++||++|.
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 67789999999999988 9999988888887778999999999999762 12233334433333445689999999999
Q ss_pred ChHHHHHHHHHHHhhc
Q psy17091 340 NINSFMESINHVYDSS 355 (1250)
Q Consensus 340 gv~~l~~~i~~~~~~~ 355 (1250)
|++++++.+.+.++..
T Consensus 161 ~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 161 NVDTIAAIVRKHLPEA 176 (301)
T ss_dssp THHHHHHHHHTTCCBC
T ss_pred CHHHHHHHHHHhCCcC
Confidence 9999999998876543
No 90
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.80 E-value=5.5e-20 Score=219.67 Aligned_cols=163 Identities=31% Similarity=0.426 Sum_probs=122.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
..++|+|+|.||||||||+|+|++.+..++++.+|||+|.....+.+++.++.+|||||+.+.. +.++.+...++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~---~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS---DQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch---hHHHHHHHHHHhh
Confidence 3689999999999999999999998888889999999999888899999999999999996542 4456666667778
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
+++.+|++++|+|++++.++.+..++..+.+ +|+++|+||+|+.+..... .+ .......+++++||++|.|
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~~~~----~~---~~~~~~~~~i~iSAktg~G 370 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQLIT----SL---EYPENITQIVHTAAAQKQG 370 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGGGST----TC---CCCTTCCCEEEEBTTTTBS
T ss_pred hhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcchhhH----HH---HHhccCCcEEEEECCCCCC
Confidence 8899999999999999999998888877654 7999999999998654322 01 1111346899999999999
Q ss_pred hHHHHHHHHHHHhhc
Q psy17091 341 INSFMESINHVYDSS 355 (1250)
Q Consensus 341 v~~l~~~i~~~~~~~ 355 (1250)
+++|++++.+.+...
T Consensus 371 i~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 371 IDSLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999998877543
No 91
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=1.8e-19 Score=196.07 Aligned_cols=164 Identities=22% Similarity=0.291 Sum_probs=126.3
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCC-CcccccCCCcceeeeEEEEE-ECCEEEEEEecCCCCcch-hhHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGY-IGKKSFIIIDTGGFEPEV-KKGIMHEMTKQTKQ 78 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~-~~~v~~~~~~T~~~~~~~~~-~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~ 78 (1250)
.++|+++|.+|||||||+|+|++.. .+.++..+++|++....... +++..+.||||||+.... .....+.+...+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 3699999999999999999999987 56788999999998776665 456899999999986431 11222333343444
Q ss_pred Hh---hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-------hhHH-hc------CCCCcE
Q psy17091 79 AI---IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFY-EL------GIGNPH 141 (1250)
Q Consensus 79 ~~---~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-------~~~~-~~------~~~~~~ 141 (1250)
++ ..+|++++|+|+++++...+..+.++++..++|+++|+||+|+...... .+.+ .. ...+++
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 188 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQ 188 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEE
Confidence 44 4488999999999988888888899998889999999999999765432 1111 21 334689
Q ss_pred ecccccCCchhHHHHHHHHhhCCc
Q psy17091 142 IISALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 142 ~iSA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
++||++|.|++++++.+.+.++..
T Consensus 189 ~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 189 LFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHC--
T ss_pred EeecCCCcCHHHHHHHHHHhcCcc
Confidence 999999999999999999988754
No 92
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.80 E-value=1.3e-19 Score=202.23 Aligned_cols=162 Identities=22% Similarity=0.302 Sum_probs=122.2
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
.++|+++|.||||||||+|+|++.. ..++++||+|.+.....+.. +..+.+|||||+.+..... .++......+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~--~~e~v~~~~~~- 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS--PEAKVARDYLL- 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS--HHHHHHHHHHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC--hHHHHHHHHHh-
Confidence 5799999999999999999999875 45779999999987776655 7889999999997654221 11111111111
Q ss_pred hccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCCh
Q psy17091 262 ILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNI 341 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv 341 (1250)
...+|++++|+|+++. +....+...+.+.++|+++|+||+|+.+........+.+.+.++ +|++++||++|.|+
T Consensus 78 ~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 78 SQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLG----VPVVATSALKQTGV 151 (272)
T ss_dssp TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT----SCEEECBTTTTBSH
T ss_pred cCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC----CCEEEEEccCCCCH
Confidence 1479999999999875 56667777788889999999999998643322222344555443 68999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy17091 342 NSFMESINHVYDS 354 (1250)
Q Consensus 342 ~~l~~~i~~~~~~ 354 (1250)
+++++++.+.+..
T Consensus 152 ~el~~~i~~~~~~ 164 (272)
T 3b1v_A 152 DQVVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999876543
No 93
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=5.6e-19 Score=198.24 Aligned_cols=165 Identities=23% Similarity=0.378 Sum_probs=131.2
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
.++|+++|.+|||||||+|+|+|... .++++||+|.+.....+.+++..+.+|||||+.+..... .+... .+..-.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~-~~~~~~ 78 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS--IDELI-ARNFIL 78 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC--HHHHH-HHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC--HHHHH-HHHhhh
Confidence 47999999999999999999999865 677999999999999999999999999999997754221 12211 122222
Q ss_pred hccCcEEEEEecCCCCCCHHHHHHHHHHHHcC-CcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCC
Q psy17091 262 ILEANVVILLLDAQQNISAQDINIANFIYESG-RSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~-~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~g 340 (1250)
...+|++++|+|+++. ++...++..+.+.+ +|+++|+||+|+.+........+.+.+.++ .|++++||++|.|
T Consensus 79 ~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----~~~~~~Sa~~g~g 152 (271)
T 3k53_A 79 DGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG----VPVIPTNAKKGEG 152 (271)
T ss_dssp TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----SCEEECBGGGTBT
T ss_pred ccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcC----CcEEEEEeCCCCC
Confidence 3789999999999986 67777788888888 999999999998754322222455666554 6899999999999
Q ss_pred hHHHHHHHHHHHhhcc
Q psy17091 341 INSFMESINHVYDSSI 356 (1250)
Q Consensus 341 v~~l~~~i~~~~~~~~ 356 (1250)
++++++.+.+.+....
T Consensus 153 i~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 153 VEELKRMIALMAEGKV 168 (271)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999877554
No 94
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.79 E-value=6.5e-19 Score=182.13 Aligned_cols=155 Identities=27% Similarity=0.356 Sum_probs=110.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
++|+++|++|||||||+|+|++... .++..|++|++...+.+.+++..+.+|||||+.........+.+...... ..+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~-~~~ 81 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEK 81 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH-HHC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh-cCC
Confidence 6899999999999999999998764 36788999999988888899999999999998754321112222222211 248
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCchhHHHHH
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi~~L~~~ 157 (1250)
+|++++|+|+++ ......+...+.+.++|+++|+||+|+...... .++. .++. +++++||++|.|++++++.
T Consensus 82 ~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~SA~~~~~v~~l~~~ 158 (165)
T 2wji_A 82 PDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKA 158 (165)
T ss_dssp CSEEEEEEETTC--HHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTS-CEEECBGGGTBSHHHHHHH
T ss_pred CCEEEEEecCCc--hhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCC-CEEEEEcCCCCCHHHHHHH
Confidence 999999999976 222334555566678999999999998543221 2222 3454 7899999999999999999
Q ss_pred HHHhh
Q psy17091 158 ILTIE 162 (1250)
Q Consensus 158 i~~~l 162 (1250)
+.+.+
T Consensus 159 l~~~~ 163 (165)
T 2wji_A 159 ISIAV 163 (165)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98765
No 95
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.79 E-value=1.8e-19 Score=204.76 Aligned_cols=163 Identities=28% Similarity=0.386 Sum_probs=132.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+|+|+||||||||+|+|++.+.+++++.|++|++...+.+.+++.++.+|||||+.......+.+.+...+..++..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 47999999999999999999999888888999999999888888999999999999986212123344455556677889
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC-ccc----hhHHh-cCCCCcEecccccCCchhHHHH
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS-SIS----LDFYE-LGIGNPHIISALYGNGIKNFLE 156 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~-~~~----~~~~~-~~~~~~~~iSA~~g~gi~~L~~ 156 (1250)
+|++++|+|+++ +...+..+.+.+...+.|+++|+||+|+... ... .++.. .++..++++||++|.|++++++
T Consensus 89 ~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~ 167 (301)
T 1ega_A 89 VELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAA 167 (301)
T ss_dssp EEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHH
T ss_pred CCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHH
Confidence 999999999987 8888888888888778999999999999762 222 22222 3555689999999999999999
Q ss_pred HHHHhhCCcc
Q psy17091 157 NILTIELPYK 166 (1250)
Q Consensus 157 ~i~~~l~~~~ 166 (1250)
.+.+.+++..
T Consensus 168 ~i~~~l~~~~ 177 (301)
T 1ega_A 168 IVRKHLPEAT 177 (301)
T ss_dssp HHHTTCCBCC
T ss_pred HHHHhCCcCC
Confidence 9998877543
No 96
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.79 E-value=1.3e-19 Score=213.54 Aligned_cols=164 Identities=24% Similarity=0.313 Sum_probs=123.2
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe-eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
..++|+|+|.+|+|||||+|+|++.+...+++.+|+|.+.....+.+.+. ++.+|||||+.+..... .....++.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~----~~~~~~~~ 108 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG----RLRVEKAR 108 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTC----CCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchh----HHHHHHHH
Confidence 46899999999999999999999988877889999999999999998876 99999999998765321 11223456
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCC
Q psy17091 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLN 339 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~ 339 (1250)
.+++.+|++++|+|+ +..+++..++.++.+.++|+++|+||+|+.+.... +.. +.+......+++++||++|.
T Consensus 109 ~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~----~~l~~~~g~~v~~vSAktg~ 181 (423)
T 3qq5_A 109 RVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELK----GLYESRYEAKVLLVSALQKK 181 (423)
T ss_dssp HHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHH----HHSSCCTTCCCCCCSSCCTT
T ss_pred HHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHH----HHHHHHcCCCEEEEECCCCC
Confidence 778899999999999 67789999999999999999999999999865543 222 22222234689999999999
Q ss_pred ChHHHHHHHHHHHhhc
Q psy17091 340 NINSFMESINHVYDSS 355 (1250)
Q Consensus 340 gv~~l~~~i~~~~~~~ 355 (1250)
|++++++++.+.+.+.
T Consensus 182 gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 182 GFDDIGKTISEILPGD 197 (423)
T ss_dssp STTTHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHhhhhh
Confidence 9999999999988543
No 97
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.79 E-value=5.2e-19 Score=184.80 Aligned_cols=163 Identities=20% Similarity=0.227 Sum_probs=126.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|+|++... .....+++|.+.....+.+++..+.+|||||+.+..... ..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----------~~ 74 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR-----------AR 74 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC-----------CS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH-----------HH
Confidence 468999999999999999999998654 344677788887777888899999999999986654211 24
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhc---cC-CCCeEEEeecC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN---FL-SFAMFNFISAI 336 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~---~~-~~~~iv~iSA~ 336 (1250)
+++.+|++++|+|++++...++...+..+...++|+++|+||+|+.+.. ..+..+.+..... .. ...+++++||+
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 5688999999999999888888888888877899999999999997642 2223333321111 11 12589999999
Q ss_pred CCCChHHHHHHHHHHHhhcc
Q psy17091 337 KLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+|.|++++++++.+.+....
T Consensus 154 ~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhhhhhc
Confidence 99999999999988876544
No 98
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=8.9e-20 Score=218.72 Aligned_cols=161 Identities=32% Similarity=0.458 Sum_probs=113.3
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
.+|+|+|+||||||||+|+|++...+.+++.||+|+|.....+.+++..+.+|||||+.... ..++......+..++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD---EPFLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------------CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc---hhHHHHHHHHHHHHH
Confidence 68999999999999999999998888889999999999988888899999999999996332 112223334556788
Q ss_pred ccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChH
Q psy17091 263 LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~ 342 (1250)
+.||++++|+|++++.+..+..+...+.+.++|+++|+||+|+.+... ...+.. ..+..+++++||++|.|++
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~------~~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh------hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence 999999999999999999999988888888999999999999865321 011111 1233478999999999999
Q ss_pred HHHHHHHHHHh
Q psy17091 343 SFMESINHVYD 353 (1250)
Q Consensus 343 ~l~~~i~~~~~ 353 (1250)
+|++++.+.++
T Consensus 154 ~L~~~i~~~l~ 164 (436)
T 2hjg_A 154 DLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHhcC
Confidence 99999987764
No 99
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.79 E-value=6.2e-19 Score=197.74 Aligned_cols=172 Identities=26% Similarity=0.355 Sum_probs=118.6
Q ss_pred EecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hh
Q psy17091 55 IDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LD 131 (1250)
Q Consensus 55 iDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~ 131 (1250)
-+.||+. .+..+++...+..+|+|++|+|++.+.+.....+.+++ .++|.++|+||+|+.+.... .+
T Consensus 4 ~w~PGhm--------~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~ 73 (282)
T 1puj_A 4 QWFPGHM--------AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKE 73 (282)
T ss_dssp -----CT--------THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHH
T ss_pred cCCchHH--------HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHH
Confidence 3568864 25567888899999999999999998777766777776 47899999999999874332 44
Q ss_pred HHh-cCCCCcEecccccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceec
Q psy17091 132 FYE-LGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVIT 210 (1250)
Q Consensus 132 ~~~-~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~ 210 (1250)
+++ .+. +++++||+++.|+++|++.+.+.+.+..+.. ........+++++++|.||||||||+|+|++.....+
T Consensus 74 ~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~----~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~ 148 (282)
T 1puj_A 74 HFENQGI-RSLSINSVNGQGLNQIVPASKEILQEKFDRM----RAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKT 148 (282)
T ss_dssp HHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHHHHHHHH----HHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC--
T ss_pred HHHhcCC-cEEEEECCCcccHHHHHHHHHHHHHHHHHHH----HhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeec
Confidence 553 455 7889999999999999999887665321100 0000113468999999999999999999999988899
Q ss_pred cCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 211 YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 211 ~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
++.||||++..... . +..+.++||||+....
T Consensus 149 ~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 149 GDRPGITTSQQWVK--V-GKELELLDTPGILWPK 179 (282)
T ss_dssp ----------CCEE--E-TTTEEEEECCCCCCSC
T ss_pred CCCCCeeeeeEEEE--e-CCCEEEEECcCcCCCC
Confidence 99999999875332 2 5689999999998764
No 100
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=4e-19 Score=199.33 Aligned_cols=158 Identities=25% Similarity=0.326 Sum_probs=124.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchh----hHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK----KGIMHEMTKQTK 77 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~----~~~~~~~~~~~~ 77 (1250)
.++|+++|.+|||||||+|+|++.. ..+++.||+|++...+.+.+.+..+.+|||||+.+... ..+.+.+... .
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~-~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH-Y 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH-H
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH-H
Confidence 4689999999999999999999987 56899999999999999999899999999999875431 1223333222 2
Q ss_pred HHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCchh
Q psy17091 78 QAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIK 152 (1250)
Q Consensus 78 ~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi~ 152 (1250)
.....+|++++|+|+++ ......+..++...++|+++|+||+|+.+.... ..+. .+|. +++++||++|.|++
T Consensus 81 ~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~-~~i~~SA~~g~gi~ 157 (274)
T 3i8s_A 81 ILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGC-PVIPLVSTRGRGIE 157 (274)
T ss_dssp HHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTS-CEEECCCGGGHHHH
T ss_pred HhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCC-CEEEEEcCCCCCHH
Confidence 33579999999999986 344556777777889999999999998654332 2222 3455 78999999999999
Q ss_pred HHHHHHHHhhCC
Q psy17091 153 NFLENILTIELP 164 (1250)
Q Consensus 153 ~L~~~i~~~l~~ 164 (1250)
++++.+.+.++.
T Consensus 158 el~~~i~~~~~~ 169 (274)
T 3i8s_A 158 ALKLAIDRYKAN 169 (274)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999876543
No 101
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.1e-18 Score=180.50 Aligned_cols=164 Identities=21% Similarity=0.162 Sum_probs=115.1
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
++.++|+++|.+|||||||+|+|++.........+.++.+.....+..++. .+.+|||||+.+.. ..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~ 76 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-----------SV 76 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-----------HH
Confidence 457999999999999999999999877654455666777766666677765 78889999984332 12
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+..+. .++..+.. .++|+++|+||+|+.+.... .+..+.+.+... .++++
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~ 152 (180)
T 2g6b_A 77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG----LPFME 152 (180)
T ss_dssp --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT----CCEEE
T ss_pred HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcC----CeEEE
Confidence 34567899999999999986443332 23444443 57999999999999864322 222233333332 58999
Q ss_pred eecCCCCChHHHHHHHHHHHhhcccc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSSIIH 358 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~~~~ 358 (1250)
+||++|.|++++++++.+.+.....+
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~~~~~~~ 178 (180)
T 2g6b_A 153 TSAKTGLNVDLAFTAIAKELKRRSMK 178 (180)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC----
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998887655433
No 102
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.78 E-value=1.5e-18 Score=192.77 Aligned_cols=156 Identities=24% Similarity=0.352 Sum_probs=121.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
++|+++|.+|||||||+|+|++.... ++++||+|.+...+.+..++..+.||||||+.........+.+...... ...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~ 83 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-KGD 83 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-HSC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-hcC
Confidence 58999999999999999999988754 8899999999999999998999999999998754422222333333322 268
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCchhHHHHH
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi~~L~~~ 157 (1250)
+|++++|+|+++. .....+...+...+.|+++|+||+|+...... ..+. .+|+ +++++||++|.|++++++.
T Consensus 84 ~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~ 160 (258)
T 3a1s_A 84 ADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGI-PVVFTSSVTGEGLEELKEK 160 (258)
T ss_dssp CSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCS-CEEECCTTTCTTHHHHHHH
T ss_pred CCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCC-CEEEEEeeCCcCHHHHHHH
Confidence 9999999999872 33444666667789999999999998643322 2222 4565 7899999999999999999
Q ss_pred HHHhhC
Q psy17091 158 ILTIEL 163 (1250)
Q Consensus 158 i~~~l~ 163 (1250)
+.+...
T Consensus 161 i~~~~~ 166 (258)
T 3a1s_A 161 IVEYAQ 166 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987653
No 103
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.78 E-value=1.7e-18 Score=184.57 Aligned_cols=162 Identities=13% Similarity=0.098 Sum_probs=115.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceec--cCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVIT--YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~--~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
....+|+++|.+|||||||+|+|++.....+ .+..| .....+...+..+.+|||||+.+... .
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 79 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG----YNVETFEKGRVAFTVFDMGGAKKFRG-----------L 79 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS----EEEEEEEETTEEEEEEEECCSGGGGG-----------G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc----eeEEEEEeCCEEEEEEECCCCHhHHH-----------H
Confidence 3579999999999999999999998876554 33333 33345667888999999999944321 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHHc-----------CCcEEEEEeccccCCccchHHHHHHHHHHhc-c
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYES-----------GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN-F 324 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~~-----------~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~-~ 324 (1250)
...+++.+|++++|+|++++.+.... .++..+.+. ++|+++|+||+|+.+....+++.+.+..... .
T Consensus 80 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (199)
T 4bas_A 80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMG 159 (199)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHT
T ss_pred HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhcc
Confidence 12567899999999999987654443 344444443 8999999999999876554444444432111 2
Q ss_pred CCCCeEEEeecCCCCChHHHHHHHHHHHhhcc
Q psy17091 325 LSFAMFNFISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 325 ~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
....+++++||++|.|++++|++|.+.+....
T Consensus 160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 160 DHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 23468999999999999999999988776543
No 104
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.78 E-value=2.6e-19 Score=214.63 Aligned_cols=158 Identities=25% Similarity=0.322 Sum_probs=99.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.||||||||+|+|++.+.+++++.|++|++.....+.+++..+.||||||+.... +.+.....+.+..++..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~-~~ve~~gi~~~~~~~~~ 312 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG-EEIEHEGIRRSRMKMAE 312 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC---------------------CCCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch-hHHHHHHHHHHHhhccc
Confidence 47999999999999999999998888899999999999999999999999999999986422 22222233456667899
Q ss_pred CCEEEEEEeCCCCCCh----hhHHHHHHHHhcCCCEEEEEeCCCCCCCccc--hhHHhcCCCCcEecccccCCchhHHHH
Q psy17091 83 SDIIIFIVDGRQGLVE----QDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFYELGIGNPHIISALYGNGIKNFLE 156 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~----~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~--~~~~~~~~~~~~~iSA~~g~gi~~L~~ 156 (1250)
+|++|+|+|++++.+. ....+.+.+. ++|+++|+||+|+...... .++...++.+++++||++|.|+++|++
T Consensus 313 aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp CSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHH
Confidence 9999999999987765 3333443333 6899999999999766544 223333345789999999999999999
Q ss_pred HHHHhhC
Q psy17091 157 NILTIEL 163 (1250)
Q Consensus 157 ~i~~~l~ 163 (1250)
++.+.+.
T Consensus 391 ~i~~~~~ 397 (476)
T 3gee_A 391 HMGDLVK 397 (476)
T ss_dssp HHTHHHH
T ss_pred HHHHHHh
Confidence 9988775
No 105
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=3.5e-18 Score=180.43 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=112.7
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|+|++.+.....+..|.+ ...+.+++..+.+|||||+.+.... ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~ 79 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----VEEIVINNTRFLMWDIGGQESLRSS-----------WNT 79 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSS----CEEEEETTEEEEEEECCC----CGG-----------GHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccc----eEEEEECCEEEEEEECCCCHhHHHH-----------HHH
Confidence 4699999999999999999999977655444444433 3456678899999999999554311 124
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|++++.+..+. .++..+.+ .+.|+++|+||+|+.+....++..+.+..........+++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 56889999999999987654443 34444443 47999999999999765444444443332211112358999999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q psy17091 336 IKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
++|.|++++++++.+.+....
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC--
T ss_pred CCCcCHHHHHHHHHHHHHHHh
Confidence 999999999999988765443
No 106
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.78 E-value=1.3e-18 Score=180.34 Aligned_cols=159 Identities=19% Similarity=0.108 Sum_probs=114.5
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|+|.+...... .| |.+.....+.+++..+.+|||||+.+... ....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-----------~~~~ 70 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT--IP--TIGFNVETVTYKNLKFQVWDLGGLTSIRP-----------YWRC 70 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC--CC--CSSEEEEEEEETTEEEEEEEECCCGGGGG-----------GGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc--CC--cCccceEEEEECCEEEEEEECCCChhhhH-----------HHHH
Confidence 469999999999999999999987654322 22 33344466778889999999999843321 1125
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|++++.+..+. ..+..+.. .++|+++|+||+|+.+.....+..+.+..........+++++||
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSA 150 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcC
Confidence 67899999999999987654433 23333333 47999999999999876544444444432222223458999999
Q ss_pred CCCCChHHHHHHHHHHHhh
Q psy17091 336 IKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (1250)
++|.|++++++++.+.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 151 TKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 9999999999999887653
No 107
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.78 E-value=4.4e-18 Score=180.50 Aligned_cols=159 Identities=25% Similarity=0.362 Sum_probs=121.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchh-hHHHHHHHHHHHHHh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK-KGIMHEMTKQTKQAI 80 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~ 80 (1250)
.++|+++|.+|||||||+|+|++.....+.+.+++|++...... +..+.+|||||+..... ......+......++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 46999999999999999999999987778888898888765432 45788999999753321 111223333333334
Q ss_pred ---hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-------hhHHhc-CCCCcEecccccCC
Q psy17091 81 ---IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFYEL-GIGNPHIISALYGN 149 (1250)
Q Consensus 81 ---~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-------~~~~~~-~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|++.+....+..+.+++...+.|+++|+||+|+.+.... .++... +..+++++||++|.
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGE 179 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCT
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 4559999999999888888888889999889999999999999765433 122222 43478999999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++++.+.+.
T Consensus 180 gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 180 GISELLDLISTLLK 193 (195)
T ss_dssp THHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998765
No 108
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.78 E-value=2.8e-18 Score=180.35 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=112.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|+|.+.......+..|++. ..+.+++..+.+|||||+.+ +.. ....
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~l~i~Dt~G~~~----------~~~-~~~~ 79 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI----KSVQSQGFKLNVWDIGGQRK----------IRP-YWRS 79 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE----EEEEETTEEEEEEECSSCGG----------GHH-HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE----EEEEECCEEEEEEECCCCHH----------HHH-HHHH
Confidence 46999999999999999999999886655555566443 45667788999999999832 211 1235
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|+++..+..+. ..+..+.. .+.|+++|+||+|+.+....++..+.+..........+++++||
T Consensus 80 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 159 (181)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccC
Confidence 67899999999999987554432 23333322 47999999999999865444333333221111122458999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q psy17091 336 IKLNNINSFMESINHVYD 353 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (1250)
++|.|++++++++.+.+.
T Consensus 160 ~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 160 LTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp TTCTTHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987654
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=1.6e-18 Score=183.08 Aligned_cols=164 Identities=27% Similarity=0.393 Sum_probs=123.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|+|++.. ..++..|++|.+.....+.+++..+.+|||||+.+..... .++... ..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~---~~ 79 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS--IDEIIA---RD 79 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS--HHHHHH---HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc--HHHHHH---HH
Confidence 46899999999999999999999865 4556889999998888899999999999999997653211 011111 11
Q ss_pred hh--ccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCC
Q psy17091 261 SI--LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKL 338 (1250)
Q Consensus 261 ~~--~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g 338 (1250)
++ ..+|++++|+|++.. +....++..+.+.+.|+++|+||+|+..........+.+.+.++ .+++++||++|
T Consensus 80 ~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~ 153 (188)
T 2wjg_A 80 YIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG----VKVVPLSAAKK 153 (188)
T ss_dssp HHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----SCEEECBGGGT
T ss_pred HHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhC----CCeEEEEecCC
Confidence 22 358999999999863 45556677777789999999999998643322222334444443 58999999999
Q ss_pred CChHHHHHHHHHHHhhcc
Q psy17091 339 NNINSFMESINHVYDSSI 356 (1250)
Q Consensus 339 ~gv~~l~~~i~~~~~~~~ 356 (1250)
.|++++++++.+.+.+..
T Consensus 154 ~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 154 MGIEELKKAISIAVKDKK 171 (188)
T ss_dssp BSHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999998887654
No 110
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.77 E-value=5.1e-19 Score=212.23 Aligned_cols=158 Identities=34% Similarity=0.453 Sum_probs=124.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCC-cchhhHHHHHHHHHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE-PEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.+|+++|.||||||||+|+|++.+.++++++|++|+|.....+.+++..+.||||||+. ... +.+.......+..++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~-~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN-DLVERLGIERTLQEIE 322 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC-TTCCCCCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccch-hhHHHHHHHHHHHHhh
Confidence 58999999999999999999998877899999999999999999999999999999987 332 1111111234456788
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccchhHHh-cCC-CCcEecccccCCchhHHHHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDFYE-LGI-GNPHIISALYGNGIKNFLENIL 159 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~-~~~-~~~~~iSA~~g~gi~~L~~~i~ 159 (1250)
.+|++|+|+|++++.+..+..+.+.+ .++|+++|+||+|+.......++.. .+. .+++++||++|.|+++|++.+.
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~ 400 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIY 400 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred cccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 99999999999987777666666665 3789999999999975422222111 121 3689999999999999999998
Q ss_pred HhhC
Q psy17091 160 TIEL 163 (1250)
Q Consensus 160 ~~l~ 163 (1250)
+.+.
T Consensus 401 ~~~~ 404 (482)
T 1xzp_A 401 RETQ 404 (482)
T ss_dssp HHTH
T ss_pred HHHh
Confidence 7543
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.77 E-value=4e-18 Score=181.13 Aligned_cols=159 Identities=23% Similarity=0.289 Sum_probs=112.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCC-CcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchh-hHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK-KGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~-~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~ 79 (1250)
.++|+++|.+|||||||+|+|++.. ...+.+.+++|++..... .+ ..+.+|||||+..... ....+.+......+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN-DELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--EC-CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 3689999999999999999999886 455778888888876543 33 3799999999754321 12233444445555
Q ss_pred hhcC---CEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHHh-c---CCCCcEecccccC
Q psy17091 80 IIES---DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFYE-L---GIGNPHIISALYG 148 (1250)
Q Consensus 80 ~~~a---d~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~~-~---~~~~~~~iSA~~g 148 (1250)
+..+ |++++|+|++++.+..+..+.+++...+.|+++|+||+|+...... .+... + ...+++++||++|
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 179 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETK 179 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTC
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCC
Confidence 5555 9999999999888888877888998889999999999999775543 12211 2 2236799999999
Q ss_pred CchhHHHHHHHHhhC
Q psy17091 149 NGIKNFLENILTIEL 163 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~ 163 (1250)
.|++++++.+.+.+.
T Consensus 180 ~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 180 KGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999987653
No 112
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.77 E-value=4.9e-18 Score=179.03 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=113.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|++++.+.....+ |.......+.+++..+.+|||||+. .+.. ....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~-~~~~ 81 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISP----TLGFNIKTLEHRGFKLNIWDVGGQK----------SLRS-YWRN 81 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCC----CSSEEEEEEEETTEEEEEEEECCSH----------HHHT-TGGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccc----cCccceEEEEECCEEEEEEECCCCH----------hHHH-HHHH
Confidence 46999999999999999999999876222222 2233345667788999999999982 2221 1235
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|++++.+..+. .++..+.+ .+.|+++|+||+|+.+....++..+.+..........+++++||
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1ksh_A 82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA 161 (186)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeC
Confidence 67899999999999987554443 33444433 47999999999999865444444333321111123458999999
Q ss_pred CCCCChHHHHHHHHHHHhh
Q psy17091 336 IKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (1250)
++|.|++++++++.+.+.+
T Consensus 162 ~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 162 VTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887754
No 113
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.77 E-value=4.7e-18 Score=179.68 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=112.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+.+||+++|.+|||||||+|+|++.+... ...| |.......+..++..+.+|||||+. .+.. ...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~-~~~ 85 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNE-DMIP--TVGFNMRKITKGNVTIKLWDIGGQP----------RFRS-MWE 85 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCC--CCSEEEEEEEETTEEEEEEEECCSH----------HHHT-THH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCC-ccCC--CCceeEEEEEeCCEEEEEEECCCCH----------hHHH-HHH
Confidence 457999999999999999999999765431 1222 2222234566778899999999982 2321 123
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|+++..+.+.. .++..+.+ .+.|+++|+||+|+.+.....++.+.+..........+++++|
T Consensus 86 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSIS 165 (188)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEE
Confidence 566899999999999886544332 23333333 5799999999999986544444444433222222346899999
Q ss_pred cCCCCChHHHHHHHHHHHhh
Q psy17091 335 AIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (1250)
|++|.|++++++++.+.+..
T Consensus 166 A~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 166 CKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTTCTTHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999877644
No 114
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.77 E-value=5.6e-18 Score=178.71 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=116.0
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+++||+++|.+|||||||+|+|++.. .....++|+.+.....+..++.. +.+|||||+.+.... .
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 69 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-----------R 69 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTT-----------H
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHH-----------H
Confidence 47999999999999999999999765 34466777777777777777765 567999998554311 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEe
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
..+++.+|++++|+|+++..+..+.. ++..+.. .+.|+++|+||+|+.+.....+..+.+.+... .+++++
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 145 (189)
T 4dsu_A 70 DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG----IPFIET 145 (189)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT----CCEEEC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC----CeEEEE
Confidence 24557799999999999864433322 3333333 37999999999999865444444455555443 589999
Q ss_pred ecCCCCChHHHHHHHHHHHhhc
Q psy17091 334 SAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
||++|.|++++++++.+.+...
T Consensus 146 Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 146 SAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998887643
No 115
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.77 E-value=4.2e-18 Score=175.30 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=109.5
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
+||+++|.+|||||||+|++++.... +..| |.+.....+.+++..+.+|||||+.+ +.. ....++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~-~~~~~~ 65 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRP-LWRHYF 65 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGG----------GHH-HHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChh----------hHH-HHHHHh
Confidence 58999999999999999999875532 2233 33344456677788999999999932 221 123567
Q ss_pred ccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCC
Q psy17091 263 LEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIK 337 (1250)
Q Consensus 263 ~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~ 337 (1250)
+.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.....+..+.+..........+++++||++
T Consensus 66 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 145 (164)
T 1r8s_A 66 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATS 145 (164)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCC
Confidence 899999999999987544332 23333333 3799999999999976544444444333222222345799999999
Q ss_pred CCChHHHHHHHHHHHh
Q psy17091 338 LNNINSFMESINHVYD 353 (1250)
Q Consensus 338 g~gv~~l~~~i~~~~~ 353 (1250)
|.|++++++++.+.+.
T Consensus 146 ~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 146 GDGLYEGLDWLSNQLR 161 (164)
T ss_dssp TBTHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999987654
No 116
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.76 E-value=3.3e-18 Score=190.88 Aligned_cols=174 Identities=19% Similarity=0.133 Sum_probs=127.8
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCC-cceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG-TTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~g-tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
.+.++|+|+|++|||||||+|+|++......+..++ +|++.....+.+++.++.||||||+.+.....+...+......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 346999999999999999999999988677666665 8999988889999999999999999765432221111112333
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCcEEEEEe-ccccCCccchHHHH--------HHHHHHhcc
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDINIANFIYES-----GRSLIVCVN-KWDSIIHNQRKIIK--------NNIKKKLNF 324 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~-----~~p~iiv~N-K~Dl~~~~~~~~~~--------~~l~~~l~~ 324 (1250)
..+++.+|++++|+|++. ++.++..++.++.+. +.|.++|+| |+|+.+. ...... +.+.+.+..
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTT
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCC
Confidence 457789999999999986 788888888888775 678888888 9999753 222211 112222221
Q ss_pred C--CCCeEEEeecCCCCChHHHHHHHHHHHhhcc
Q psy17091 325 L--SFAMFNFISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 325 ~--~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
. .+.+ +++||++|.|++++++.+.+.+....
T Consensus 178 ~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 178 RICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp CEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEecC-cccccccHHHHHHHHHHHHHHHHhCC
Confidence 1 0223 78999999999999999988876644
No 117
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=3e-18 Score=181.91 Aligned_cols=153 Identities=20% Similarity=0.138 Sum_probs=109.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++ ..+.||||||+... ......++
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 85 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF---------RTLTPSYY 85 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG---------CCSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh---------hhhhHHHh
Confidence 48999999999999999999987643 33445555566556666665 57899999997632 23345667
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. .++++||++|.|
T Consensus 86 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 164 (195)
T 1x3s_A 86 RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSM-LFIEASAKTCDG 164 (195)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCC-EEEEecCCCCCC
Confidence 89999999999987422221 223333333 35799999999999543322 2233 3343 689999999999
Q ss_pred hhHHHHHHHHhhCCcc
Q psy17091 151 IKNFLENILTIELPYK 166 (1250)
Q Consensus 151 i~~L~~~i~~~l~~~~ 166 (1250)
++++++.+.+.+....
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 165 VQCAFEELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998876543
No 118
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=5.5e-18 Score=185.16 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=112.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
++|+++|.+|||||||+|+|++.... +.+.+++|++.......+++..+.||||||+.+....+...............
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHI 108 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhcc
Confidence 68999999999999999999988754 67788999999988888889999999999985322111000001112234678
Q ss_pred CCEEEEEEeCCCCCChh---hHHHHHHHHhc--CCCEEEEEeCCCCCCCccc--------hhHHhcCC--CCcEeccccc
Q psy17091 83 SDIIIFIVDGRQGLVEQ---DKLITNFLRKS--GQPIVLVINKSENINSSIS--------LDFYELGI--GNPHIISALY 147 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~---~~~~~~~l~~~--~~p~ilv~NK~D~~~~~~~--------~~~~~~~~--~~~~~iSA~~ 147 (1250)
+|++|+|+|++++.+.. ...+...++.. +.|+++|+||+|+.+.... .++..... ..++++||++
T Consensus 109 ~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 188 (228)
T 2qu8_A 109 NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLT 188 (228)
T ss_dssp SEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTT
T ss_pred ccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 89999999998764432 23455555554 7899999999999765433 12222221 3679999999
Q ss_pred CCchhHHHHHHHHhhCC
Q psy17091 148 GNGIKNFLENILTIELP 164 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~ 164 (1250)
|.|++++++.+.+.+..
T Consensus 189 g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 189 GVGVEQAKITACELLKN 205 (228)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887753
No 119
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.76 E-value=3.3e-18 Score=179.69 Aligned_cols=156 Identities=18% Similarity=0.109 Sum_probs=113.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+.+||+++|.+|||||||+|+|++.+.....+..|.+. ..+.+++..+.+|||||+.+.... ..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~ 83 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRSS-----------WN 83 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC----EEEEETTEEEEEEEESSSGGGTCG-----------GG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee----EEEEECCEEEEEEECCCCHhHHHH-----------HH
Confidence 357999999999999999999999887755566666554 456678899999999999443211 13
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|+++..+.++. .++..+.+ .++|+++|+||+|+.+....++..+.+..........+++++|
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 567899999999999987665443 33444443 5799999999999976544444333332211111235899999
Q ss_pred cCCCCChHHHHHHHHH
Q psy17091 335 AIKLNNINSFMESINH 350 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~ 350 (1250)
|++|.|++++++++.+
T Consensus 164 a~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMS 179 (181)
T ss_dssp TTTTBTHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHh
Confidence 9999999999999864
No 120
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.76 E-value=1.6e-18 Score=184.26 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=114.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
.+.+||+++|.+|||||||+|+|++... ...+.+|+.+.....+.+++.. +.+|||||+.+... .
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 87 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR-----------L 87 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-----------T
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH-----------H
Confidence 4579999999999999999999998653 3345566666655666677655 48899999843321 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEeccccCCccc---hHHHHHHHHHHhccCCCCeE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQ---RKIIKNNIKKKLNFLSFAMF 330 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~~--~~p~iiv~NK~Dl~~~~~---~~~~~~~l~~~l~~~~~~~i 330 (1250)
...+++.+|++++|+|+++..+..+. .+...+... +.|+++|+||+|+.+... ..+..+.+.+.+ +..++
T Consensus 88 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~ 164 (194)
T 3reg_A 88 RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL---GCVAY 164 (194)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH---TCSCE
T ss_pred hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc---CCCEE
Confidence 22467899999999999987555442 344444443 699999999999975321 122233333333 33449
Q ss_pred EEeecCCCCChHHHHHHHHHHHhhc
Q psy17091 331 NFISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 331 v~iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
+++||++|.|++++|+++.+.+...
T Consensus 165 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 165 IEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred EEeecCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998876543
No 121
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=177.02 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=105.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||+|+|++.......+.+|++.. ...+.+++. .+.+|||||+.... +.. ..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~-~~ 71 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVY--ERTLTVDGEDTTLVVVDTWEAEKLD--------KSW-SQ 71 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEE--EEEEEETTEEEEEEEECCC---------------CH-HH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCcccccee--EEEEEECCEEEEEEEEecCCCCccc--------hhh-hH
Confidence 468999999999999999999999877666666676653 344566664 67899999985421 111 12
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHHc----CCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYES----GRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~~----~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
..+++.+|++++|+|+++..+.... .++..+.+. ++|+++|+||+|+.+.... .+..+.+.... ..++++
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 147 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF----DCKFIE 147 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH----TSEEEE
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHc----CCeEEE
Confidence 3466889999999999986443333 244444443 7999999999999764322 12222233322 268999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++++++.+.+..
T Consensus 148 ~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 148 TSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999877644
No 122
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=181.09 Aligned_cols=161 Identities=15% Similarity=0.111 Sum_probs=113.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+.++|+++|.+|||||||+|+|++....... ...|.+.....+.+++..+.+|||||+.+.... ..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~~ 85 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNL-----------WE 85 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGG-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHHHHH-----------HH
Confidence 35799999999999999999999987633332 223445556677788899999999998654311 12
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH------cCCcEEEEEeccccCCccchHHHHHHHH-HHhccCCCCeEE
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE------SGRSLIVCVNKWDSIIHNQRKIIKNNIK-KKLNFLSFAMFN 331 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~-~~l~~~~~~~iv 331 (1250)
.+++.+|++++|+|++++.+..+. .++..+.. .++|+++|+||+|+.+....++..+.+. ..+. ....+++
T Consensus 86 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~ 164 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIK-DKPWHIC 164 (190)
T ss_dssp GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCC-SSCEEEE
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhcc-CCceEEE
Confidence 467899999999999886333332 23333333 4799999999999986544444433332 1111 1246899
Q ss_pred EeecCCCCChHHHHHHHHHHHhh
Q psy17091 332 FISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 332 ~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
++||++|.|++++++++.+.+..
T Consensus 165 ~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 165 ASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC--
T ss_pred EccCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 123
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.76 E-value=6.1e-18 Score=176.94 Aligned_cols=161 Identities=19% Similarity=0.115 Sum_probs=117.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+..+||+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||..+....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 74 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI----------- 74 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh-----------
Confidence 35799999999999999999999987654 44677788888778888888 57888999997544321
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHHc--CCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYES--GRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~~--~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
...+++.+|++++|+|++++.+..+.. ++..+.+. +.|+++|+||+|+.+.... ......+..... .+++++
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~ 150 (181)
T 3tw8_B 75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG----IQLFET 150 (181)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----CCEEEC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcC----CeEEEE
Confidence 124668899999999999864444332 33444332 5899999999998764322 122233333332 589999
Q ss_pred ecCCCCChHHHHHHHHHHHhhcc
Q psy17091 334 SAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
||++|.|++++++++.+.+....
T Consensus 151 Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 151 SAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999988775543
No 124
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.76 E-value=7.9e-18 Score=177.99 Aligned_cols=159 Identities=16% Similarity=0.096 Sum_probs=114.3
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|+|.+.+.....+..+ .....+.+++..+.+|||||+.+.... ...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~~-----------~~~ 85 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG----VNLETLQYKNISFEVWDLGGQTGVRPY-----------WRC 85 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTT----CCEEEEEETTEEEEEEEECCSSSSCCC-----------CSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc----eEEEEEEECCEEEEEEECCCCHhHHHH-----------HHH
Confidence 46999999999999999999998766543333333 334566778899999999998654321 123
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|++++.+..+. ..+..+.. .++|+++|+||+|+.+....++..+.+..........+++++||
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 165 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSS 165 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccC
Confidence 56789999999999987654433 23333333 37999999999999865444444444332221222358999999
Q ss_pred CCCCChHHHHHHHHHHHhh
Q psy17091 336 IKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (1250)
++|.|++++++++.+.+.+
T Consensus 166 ~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 166 KTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHh
Confidence 9999999999999887754
No 125
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.76 E-value=1.9e-18 Score=196.99 Aligned_cols=192 Identities=18% Similarity=0.220 Sum_probs=131.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcce-----eccCCCC----------------------cceee-------------
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRV-----ITYDTPG----------------------TTRDS------------- 220 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~-----~~~~~~g----------------------tT~~~------------- 220 (1250)
..++|+++|.+|||||||+|+|+|.++. .++..|+ +|++.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 3589999999999999999999998765 4555665 45431
Q ss_pred ----------EEEEEEEc-CeeEEEEecCCCCCCCc--chhhHHHHHHHHHHHhhccCcEEE-EEecCCCCCCHHHH-HH
Q psy17091 221 ----------IKSLFEYN-NKKYILIDTAGIRRRNK--TFEVIEKFSVIKTLKSILEANVVI-LLLDAQQNISAQDI-NI 285 (1250)
Q Consensus 221 ----------~~~~~~~~-~~~~~liDTpG~~~~~~--~~~~~e~~~~~~~~~~~~~ad~vl-lviD~~~~~~~~d~-~~ 285 (1250)
....+... +.++.+|||||+.+... ..+.++......+..+++.++.++ +|+|++.+++.++. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 11112222 36899999999975321 011222233344557778888666 79999998877775 57
Q ss_pred HHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccC--CCCeEEEeecCCCCChHHHHHHHHHH---------Hhh
Q psy17091 286 ANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL--SFAMFNFISAIKLNNINSFMESINHV---------YDS 354 (1250)
Q Consensus 286 ~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~--~~~~iv~iSA~~g~gv~~l~~~i~~~---------~~~ 354 (1250)
++.+...++|+++|+||+|+.+.... ..+.++..+... ++.+++++||++|.|++++++++.+. +..
T Consensus 185 ~~~~~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~ 262 (299)
T 2aka_B 185 AKEVDPQGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRH 262 (299)
T ss_dssp HHHHCTTCSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGG
T ss_pred HHHhCCCCCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHHhcCCcccc
Confidence 77777778999999999999864331 112233222222 34588999999999999999997653 233
Q ss_pred cccccChhHHHHHHHHHHHc
Q psy17091 355 SIIHLSTSRITRALISAIKN 374 (1250)
Q Consensus 355 ~~~~~~~~~l~~~l~~~~~~ 374 (1250)
...++.+..+++++++.+..
T Consensus 263 ~~~r~~~~~l~~~l~~~l~~ 282 (299)
T 2aka_B 263 LADRMGTPYLQKVLNQQLTN 282 (299)
T ss_dssp GGGGCSHHHHHHHHHHHHHH
T ss_pred chhhhCHHHHHHHHHHHHHH
Confidence 34567788999988877654
No 126
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.76 E-value=3.8e-18 Score=175.99 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=97.0
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||+|+|++......++.+|+|.+ ..+..++. .+.+|||||+.+.. . ...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~----------~-~~~ 67 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGR----------W-LPG 67 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccch----------h-hhh
Confidence 47999999999999999999998877777778888774 33445544 67789999985432 1 112
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
.+++.+|++++|+|+++..+.... .++..+.+ .++|+++|+||+|+.+.... .+..+.+.... ..+++++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~ 143 (166)
T 3q72_A 68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF----DCKFIET 143 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT----TCEEEEC
T ss_pred hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHh----CCcEEEe
Confidence 456889999999999986443332 23444443 37899999999999764332 22223333333 3699999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||++|.|++++++++.+.+..
T Consensus 144 Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 144 SAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp BGGGTBSHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 127
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=179.95 Aligned_cols=160 Identities=19% Similarity=0.150 Sum_probs=109.9
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|+|++..... ...+.++.+.....+.+++. .+.+|||||+.+. .. .
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------~~-~ 91 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE-ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF----------NS-I 91 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG----------HH-H
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH----------HH-H
Confidence 457999999999999999999999866433 24555566666667777764 6888999998322 11 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEe
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
...+++.+|++++|+|++++.+.++.. ++..+.. .++|+++|+||+|+.+..... .++..+........+++++
T Consensus 92 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~~~ 169 (192)
T 2il1_A 92 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT--RQQGEKFAQQITGMRFCEA 169 (192)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHTSTTCEEEEC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHhcCCCeEEEE
Confidence 235668899999999999875544432 3333333 379999999999997543221 1122222223335789999
Q ss_pred ecCCCCChHHHHHHHHHHHh
Q psy17091 334 SAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~ 353 (1250)
||++|.|++++++++.+.+.
T Consensus 170 SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 170 SAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999977654
No 128
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.75 E-value=1.3e-17 Score=184.03 Aligned_cols=181 Identities=14% Similarity=0.065 Sum_probs=125.0
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCC-CCcceeeEEEEEEEcCeeEEEEecCCCCCCCcch-hhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDT-PGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~-~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~e~~~~~~ 257 (1250)
.++++|+++|.+|||||||+|+|++.+....+.. .|+|+++....+.+++..+.||||||+.+..... +.........
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999999887766443 3689999889999999999999999996553211 1111111111
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHc------CCcEEEEEeccccCCccchHHHH-----HHHHHHhccCC
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDINIANFIYES------GRSLIVCVNKWDSIIHNQRKIIK-----NNIKKKLNFLS 326 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~------~~p~iiv~NK~Dl~~~~~~~~~~-----~~l~~~l~~~~ 326 (1250)
...+.+.+|++|+|+|++. ++..+..+++++.+. +.|+|+|.||+|+.+.. ..+.. +.++..+...+
T Consensus 99 ~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHHcC
Confidence 2234489999999999985 888888888888874 78999999999996532 33222 22444443333
Q ss_pred CCeEEEeecCC-----CCChHHHHHHHHHHHhhcccccChhH
Q psy17091 327 FAMFNFISAIK-----LNNINSFMESINHVYDSSIIHLSTSR 363 (1250)
Q Consensus 327 ~~~iv~iSA~~-----g~gv~~l~~~i~~~~~~~~~~~~~~~ 363 (1250)
. .++.+++.. +.|+++|++.|.+.+.+......+..
T Consensus 177 ~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~ 217 (247)
T 3lxw_A 177 G-RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNE 217 (247)
T ss_dssp T-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCH
T ss_pred C-eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 2 455555443 68999999999999887655544443
No 129
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.75 E-value=8.5e-18 Score=181.57 Aligned_cols=156 Identities=24% Similarity=0.300 Sum_probs=107.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc---CeeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN---NKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+.+||+++|.+|||||||+|+|++... ...+++++.+.. .+.++ +..+.+|||||+ +.+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~ 71 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGH----------ESLRFQL 71 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEE--EEECSSTTCCEEEEEECCCC----------HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeE--EEEecCCCccEEEEEECCCC----------hhHHHHH
Confidence 468999999999999999999997652 334555555443 36666 567999999999 3343212
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHHHHHHHH---------HcCCcEEEEEeccccCCccchHHHHHHHHHHhc-----
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDINIANFIY---------ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN----- 323 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~---------~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~----- 323 (1250)
...+++.+|++++|+|+++. ......+..++. ..++|+++|+||+|+.+........+.+.+.+.
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 150 (214)
T 2fh5_B 72 LDRFKSSARAVVFVVDSAAF-QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT 150 (214)
T ss_dssp HHHHGGGEEEEEEEEETTTH-HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEECCCc-CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhcc
Confidence 33467899999999999862 122223322222 236899999999999876555555555554433
Q ss_pred ----------------cCC-------------CCeEEEeecCCC------CChHHHHHHHHHH
Q psy17091 324 ----------------FLS-------------FAMFNFISAIKL------NNINSFMESINHV 351 (1250)
Q Consensus 324 ----------------~~~-------------~~~iv~iSA~~g------~gv~~l~~~i~~~ 351 (1250)
... .++++++||++| .|++++|+++.+.
T Consensus 151 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 151 RSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred chhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 467999999999 9999999998764
No 130
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.75 E-value=1.4e-18 Score=194.01 Aligned_cols=155 Identities=24% Similarity=0.357 Sum_probs=116.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.++|+++|.||||||||+|+|++.+. .++++||+|++...+.+.. +..+.+|||||+.........+.+...+.. ..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~-~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL-SQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH-TT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh-cC
Confidence 46899999999999999999998764 4889999999988877655 778999999998754322222233333222 14
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCchhHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLE 156 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi~~L~~ 156 (1250)
.+|++++|+|+++ ......+...+...++|+++|+||+|+...... ..+. .++. +++++||++|.|++++++
T Consensus 80 ~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~ 156 (272)
T 3b1v_A 80 RADSILNVVDATN--LERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGV-PVVATSALKQTGVDQVVK 156 (272)
T ss_dssp CCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTS-CEEECBTTTTBSHHHHHH
T ss_pred CCCEEEEEecCCc--hHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCC-CEEEEEccCCCCHHHHHH
Confidence 7999999999976 233344556666679999999999998643222 2222 3455 789999999999999999
Q ss_pred HHHHhh
Q psy17091 157 NILTIE 162 (1250)
Q Consensus 157 ~i~~~l 162 (1250)
.+.+.+
T Consensus 157 ~i~~~~ 162 (272)
T 3b1v_A 157 KAAHTT 162 (272)
T ss_dssp HHHHSC
T ss_pred HHHHHH
Confidence 998754
No 131
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=5.5e-18 Score=177.93 Aligned_cols=159 Identities=18% Similarity=0.126 Sum_probs=111.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|++++.+.....+..|.+ ...+.+++..+.+|||||+.+.... ...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~ 81 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN----VETLSYKNLKLNVWDLGGQTSIRPY-----------WRC 81 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC----EEEEEETTEEEEEEEEC----CCTT-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc----eEEEEECCEEEEEEECCCCHhHHHH-----------HHH
Confidence 4699999999999999999999987765555555533 3456778899999999999654311 124
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++++|+|++++.+.++. .++..+.. .++|+++|+||+|+.+....++..+.+..........+++++||
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 161 (183)
T 1moz_A 82 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 161 (183)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccC
Confidence 66889999999999987654443 23444432 57999999999999765443333333221111112348999999
Q ss_pred CCCCChHHHHHHHHHHHhh
Q psy17091 336 IKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (1250)
++|.|++++++++.+.+.+
T Consensus 162 ~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 162 IKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp GGTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 132
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.75 E-value=5.4e-18 Score=178.66 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=110.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
.+.+||+++|.+|||||||+|++++..... ....| .+.....+.+++. .+.+|||||+.+ +.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~--~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~--- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQ--EESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPE----------LQ--- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCC--CCCTT-CEEEEEEEEETTEEEEEEEEECSSSCC----------HH---
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCC-cceEEEEEEECCEEEEEEEEECCCChh----------hh---
Confidence 457999999999999999999999765432 12223 4444466777775 456699999943 21
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHH-HHHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQD-INIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d-~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
+++.+|++++|+|+++..+.++ ..++..+.. .+.|+++|+||+|+.+........++..+.....+..++++
T Consensus 82 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e 158 (184)
T 3ihw_A 82 ---FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYE 158 (184)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEE
T ss_pred ---eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEE
Confidence 5577999999999998755555 345555554 36899999999999532211111222233333334578999
Q ss_pred eecCCCCChHHHHHHHHHHHhhc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
+||++|.|++++|+++.+.+...
T Consensus 159 ~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998876543
No 133
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.75 E-value=1.5e-18 Score=181.33 Aligned_cols=152 Identities=23% Similarity=0.331 Sum_probs=118.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.++|+++|.+|||||||+|+|++.... ....+++|.+.....+.+++..+.+|||||+.... .....++.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~ 77 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFT---------TMRARGAQ 77 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSS---------CSCCSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHH---------HHHHHHHh
Confidence 369999999999999999999987754 55677888888777888899999999999986432 11234567
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc--hhHH-hcC-----C---CCcEecccccCCc
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFY-ELG-----I---GNPHIISALYGNG 150 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~--~~~~-~~~-----~---~~~~~iSA~~g~g 150 (1250)
.+|++++|+|++++......+....+...+.|+++|+||+|+...... .+.+ ..+ . .+++++||++|.|
T Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 78 VTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred hCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 899999999998877777666666666678999999999999764321 2222 111 1 2578999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 158 v~~l~~~l~~~~~ 170 (178)
T 2lkc_A 158 LDHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987654
No 134
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.75 E-value=1e-17 Score=177.77 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=110.1
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+.+||+++|.+|||||||+|+|++.+.... .| |.+.....+.+++..+.+|||||+.+... ...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~ 91 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNICFTVWDVGGQDKIRP-----------LWR 91 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-----CT-----------THH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc--CC--cCceeEEEEEECCEEEEEEECCCCHhHHH-----------HHH
Confidence 3579999999999999999999997664322 22 33444556777889999999999954321 112
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+....+++.+.+..........+++++|
T Consensus 92 ~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 171 (192)
T 2b6h_A 92 HYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATC 171 (192)
T ss_dssp HHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECc
Confidence 456889999999999987544333 23333333 3799999999999976544444444433222222345899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q psy17091 335 AIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (1250)
|++|.|++++++++.+.+.
T Consensus 172 A~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 172 ATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTTTBTHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHHh
Confidence 9999999999999987653
No 135
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.75 E-value=1.7e-18 Score=181.58 Aligned_cols=149 Identities=17% Similarity=0.119 Sum_probs=105.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
++|+++|.+|||||||+|+|++.. ....+++++.+.....+.+++ ..+.+|||||+.... .....++
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~ 75 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS---------IFPQTYS 75 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTC---------CCCGGGT
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhh---------HHHHHHH
Confidence 589999999999999999999765 345555666665566777777 467899999986432 2233457
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHH-H---hcCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFL-R---KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l-~---~~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
+.+|++++|+|.++..+... ..+...+ + ..+.|+++|+||+|+.+.... .++. ..+. +++++||++|.
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 154 (181)
T 3t5g_A 76 IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFLESSAKENQ 154 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCTTSHH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC-cEEEEecCCCC
Confidence 88999999999986322211 1122222 2 247899999999999755443 2233 3344 78999999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++.+.+.+.
T Consensus 155 ~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 155 TAVDVFRRIILEAE 168 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988664
No 136
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.75 E-value=8.8e-18 Score=179.24 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=105.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|+|.+.......+..+.+ ...+.+++.++.+|||||+.+.... ...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~~~~~~~-----------~~~ 88 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHIQARRV-----------WKN 88 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC----CCG-----------GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCcHhhHHH-----------HHH
Confidence 4689999999999999999999987654444444444 3567788899999999998554321 124
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHh----------c--
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL----------N-- 323 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l----------~-- 323 (1250)
+++.+|++++|+|++++.+..+. .++..+.+ .++|+++|+||+|+.+....++..+.+.... .
T Consensus 89 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKEL 168 (198)
T ss_dssp GGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccc
Confidence 66899999999999987554432 23444432 4799999999999976333333332222110 0
Q ss_pred cCCCCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 324 FLSFAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 324 ~~~~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
.....+++++||++|.|++++++++.+.
T Consensus 169 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 169 NARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 1234689999999999999999998654
No 137
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.75 E-value=8.3e-18 Score=176.82 Aligned_cols=156 Identities=19% Similarity=0.281 Sum_probs=129.7
Q ss_pred eeeecccCccCCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCchh--HHHHhhhhCCCeEEEEccCCChhhhhccCCCC
Q psy17091 678 NIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPIS 755 (1250)
Q Consensus 678 ~ivfmg~GEpl~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~--~i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~ 755 (1250)
+|+|+| ||||++++++.++++.+++. +.++++.|+|..+ .++++++..+. +.+||++++++.|+++.+
T Consensus 6 ~v~~tG-GEPll~~~~~~~l~~~~~~~------g~~~~l~TNG~l~~~~~~~l~~~~d~-v~isld~~~~~~~~~~~g-- 75 (182)
T 3can_A 6 GVTFCG-GEPLLHPEFLIDILKRCGQQ------GIHRAVDTTLLARKETVDEVMRNCEL-LLIDLKSMDSTVHQTFCD-- 75 (182)
T ss_dssp CEEECS-STGGGSHHHHHHHHHHHHHT------TCCEEEECTTCCCHHHHHHHHHTCSE-EEEECCCSCHHHHHHHHS--
T ss_pred EEEEEc-ccccCCHHHHHHHHHHHHHC------CCcEEEECCCCCCHHHHHHHHhhCCE-EEEECCCCCHHHHHHHhC--
Confidence 599999 99999999999999999986 5699999999864 36667766553 779999999999999964
Q ss_pred CCCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCcc-c--eeEeeeccCCCCCCCC-----
Q psy17091 756 KKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT-S--CKINLIPFNCFPNSNL----- 827 (1250)
Q Consensus 756 ~~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~-~--~~vnlip~n~~~~~~~----- 827 (1250)
.+.+.++++++.+.+. + .++++++++++|+||+.+++.+++++++. + . ..++++||+|.+..+|
T Consensus 76 --~~~~~i~~~i~~l~~~-g-~~v~i~~~v~~~~n~n~~~~~~~~~~~~~----~~g~~~~~~l~~~~p~g~~~~~~l~~ 147 (182)
T 3can_A 76 --VPNELILKNIRRVAEA-D-FPYYIRIPLIEGVNADEKNIKLSAEFLAS----LPRHPEIINLLPYHDIGKGKHAKLGS 147 (182)
T ss_dssp --SCSHHHHHHHHHHHHT-T-CCEEEEEEECBTTTCSHHHHHHHHHHHHH----SSSCCSEEEEEECCC-----------
T ss_pred --CCHHHHHHHHHHHHhC-C-CeEEEEEEEECCCCCCHHHHHHHHHHHHh----CcCccceEEEecCcccCHHHHHHhCC
Confidence 4569999999877653 4 48999999999999999999999999998 5 3 5899999999876543
Q ss_pred -------CCCcHHH--HHHHHHHHHhCCCeEEE
Q psy17091 828 -------ICSKNSR--IKIFAKILMNSGIFVTI 851 (1250)
Q Consensus 828 -------~~p~~e~--i~~f~~iL~~~G~~~~i 851 (1250)
++|+.+. +++++++++++|+.+++
T Consensus 148 ~y~~~~~~~~~~e~~~l~~~~~~~~~~g~~~~i 180 (182)
T 3can_A 148 IYNPKGYKMQTPSEEVQQQCIQILTDYGLKATI 180 (182)
T ss_dssp -------CCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred cCcccCCCCCCHHHHHHHHHHHHHHHcCCceEe
Confidence 4677777 99999999999999876
No 138
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.75 E-value=6.1e-18 Score=204.23 Aligned_cols=163 Identities=19% Similarity=0.162 Sum_probs=125.0
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcc------eeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENR------VITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKF 253 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~------~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~ 253 (1250)
.+.++|+++|++|+|||||+|+|++... ...+..+|+|.+.....+.+++..+.+|||||+ +.|
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh----------~~~ 86 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH----------ADL 86 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH----------HHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh----------HHH
Confidence 3579999999999999999999998661 233567899999888888889999999999998 334
Q ss_pred HHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccC---CCCeE
Q psy17091 254 SVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFL---SFAMF 330 (1250)
Q Consensus 254 ~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~---~~~~i 330 (1250)
. ......++.+|++++|+|++++...+..+.+..+...++|+++|+||+|+.+....++..+++.+.+... ...++
T Consensus 87 ~-~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 87 I-RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp H-HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred H-HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 2 3345678899999999999999999999999888889999999999999987555555566666655322 24789
Q ss_pred EEeecCCCCChHHHHHHHHHHHh
Q psy17091 331 NFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 331 v~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+++||++|.|+++|+++|.+.++
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999877654
No 139
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.75 E-value=9.1e-18 Score=175.34 Aligned_cols=159 Identities=14% Similarity=0.082 Sum_probs=112.8
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC---eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN---KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+.+||+++|.+|||||||+|+|++.... ....|.++.+.....+.+++ ..+.+|||||+.+....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~----------- 72 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM----------- 72 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch-----------
Confidence 4799999999999999999999986532 22234445666667777776 68899999998654311
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH-----cCCc-EEEEEeccccCCccch-HHHHHHHHHHhccCCCCe
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE-----SGRS-LIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAM 329 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~-----~~~p-~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~ 329 (1250)
...+++.+|++++|+|++++.+.++. .++..+.+ .+.| +++|+||+|+.+.... .+..+.+.+..+ .+
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~ 148 (178)
T 2hxs_A 73 LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG----FS 148 (178)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT----CE
T ss_pred hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC----Cc
Confidence 12456899999999999986444333 23344433 2566 8999999999753222 222233333332 58
Q ss_pred EEEeecCCCCChHHHHHHHHHHHhhc
Q psy17091 330 FNFISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 330 iv~iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
++++||++|.|++++++++.+.+...
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 149 SHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999998876543
No 140
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.75 E-value=2.2e-17 Score=172.16 Aligned_cols=159 Identities=18% Similarity=0.106 Sum_probs=110.7
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..++|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++. .+.+|||||+.+ +.. ..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~-~~ 73 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER----------FRS-LR 73 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCGG----------GHH-HH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh----------hhh-hH
Confidence 4799999999999999999999976532 334555666666667777774 788999999832 221 22
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH-------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE-------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMF 330 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~i 330 (1250)
..+++.+|++++|+|++++.+.++. .++..+.. .+.|+++|+||+|+.+.....+..+.+.+ .....++
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~ 150 (177)
T 1wms_A 74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR---DNGDYPY 150 (177)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH---HTTCCCE
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH---hcCCceE
Confidence 3577899999999999986443332 23333332 57899999999999743322222222222 1335789
Q ss_pred EEeecCCCCChHHHHHHHHHHHhh
Q psy17091 331 NFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 331 v~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+++||++|.|++++++++.+.+..
T Consensus 151 ~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999877643
No 141
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.75 E-value=6.2e-18 Score=174.98 Aligned_cols=157 Identities=22% Similarity=0.194 Sum_probs=109.0
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||+|+|++.+.. ....++++.+.....+.+++. .+.+|||||+.+.... ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------~~ 70 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI-----------TT 70 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC-----------CH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh-----------HH
Confidence 689999999999999999999976542 335566666666666666653 6788999998543311 12
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
.+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.....+..+.+.+..+ .+++++||
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~Sa 146 (170)
T 1g16_A 71 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG----IPFIESSA 146 (170)
T ss_dssp HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT----CCEEECBT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC----CeEEEEEC
Confidence 456889999999999886443332 34444443 37899999999999543333333334444333 58999999
Q ss_pred CCCCChHHHHHHHHHHHhh
Q psy17091 336 IKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (1250)
++|.|++++++++.+.+.+
T Consensus 147 ~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 147 KNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 142
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=179.88 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=111.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...++|+++|.+|||||||+|+|++.. ..+.+++|+.+.....+.+++. .+.+|||||+.+....
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 84 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL----------- 84 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH-----------
Confidence 457999999999999999999999865 3456677777777677777775 5568999999665421
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEeccccCCccc-------------hHHHHHHHHH
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQ-------------RKIIKNNIKK 320 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~~--~~p~iiv~NK~Dl~~~~~-------------~~~~~~~l~~ 320 (1250)
...+++.+|++++|+|+++..+..+. .++..+... +.|+++|+||+|+.+... ..+....+.+
T Consensus 85 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 164 (201)
T 2q3h_A 85 RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE 164 (201)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH
Confidence 12356889999999999987555544 244445443 799999999999975311 1112222333
Q ss_pred HhccCCCCeEEEeecCCCCChHHHHHHHHHHHhhc
Q psy17091 321 KLNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 321 ~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
.+ +..+++++||++|.|++++++++.+.+...
T Consensus 165 ~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 165 EI---KAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HH---TCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred hc---CCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 32 335899999999999999999998876543
No 143
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.74 E-value=1.3e-17 Score=172.45 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=102.7
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||+|+|++...... ..+.+|.+.....+.+++. .+.+|||||+.+.. .....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~ 70 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG----------GWLQD 70 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC------------------C
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccc----------hhhhh
Confidence 47999999999999999999997665444 3444566676677777774 56689999995432 11112
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
.+++.+|++++|+|+++..+.... .++..+.. .++|+++|+||+|+.+.... .+..+.+.+.. ..+++++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~ 146 (169)
T 3q85_A 71 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL----SCKHIET 146 (169)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----TCEEEEC
T ss_pred hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc----CCcEEEe
Confidence 345679999999999885333222 23333433 27999999999999743322 22233333333 3589999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||++|.|++++|+++.+.+..
T Consensus 147 Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 147 SAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred cCccCCCHHHHHHHHHHHHHh
Confidence 999999999999999877643
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.74 E-value=9.9e-18 Score=200.33 Aligned_cols=156 Identities=21% Similarity=0.276 Sum_probs=122.1
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceecc------------------------------CCCCcceeeEEEEEEEcC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITY------------------------------DTPGTTRDSIKSLFEYNN 229 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~------------------------------~~~gtT~~~~~~~~~~~~ 229 (1250)
...++|+++|++|+|||||+|+|++....+.. ..+|+|.+.....+.+++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 34699999999999999999999765332221 237899999999999999
Q ss_pred eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCC-------HHHHHHHHHHHHcCCc-EEEEEe
Q psy17091 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNIS-------AQDINIANFIYESGRS-LIVCVN 301 (1250)
Q Consensus 230 ~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~-------~~d~~~~~~~~~~~~p-~iiv~N 301 (1250)
..+.+|||||+. .|. .....+++.+|++++|+|++++.. .+..+.+..+...++| +|+|+|
T Consensus 95 ~~~~iiDTPGh~----------~f~-~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviN 163 (439)
T 3j2k_7 95 KHFTILDAPGHK----------SFV-PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLIN 163 (439)
T ss_pred eEEEEEECCChH----------HHH-HHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEee
Confidence 999999999993 332 334466789999999999999876 5888888888888998 999999
Q ss_pred ccccCCc----cchHHHHHHHHHHhccCC-----CCeEEEeecCCCCChHHHHH
Q psy17091 302 KWDSIIH----NQRKIIKNNIKKKLNFLS-----FAMFNFISAIKLNNINSFME 346 (1250)
Q Consensus 302 K~Dl~~~----~~~~~~~~~l~~~l~~~~-----~~~iv~iSA~~g~gv~~l~~ 346 (1250)
|+|+.+. ...++..+++...+...+ ..+++++||++|.|++++.+
T Consensus 164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999642 223444555555543333 46899999999999999876
No 145
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=177.22 Aligned_cols=161 Identities=18% Similarity=0.146 Sum_probs=117.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+..+||+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||+.+... .
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 81 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-----------I 81 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT-----------T
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh-----------h
Confidence 3579999999999999999999997653 334667778887778888877 4688899999843321 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|+++..+.+.. .++..+.. .+.|+++|+||+|+.+..... ...+.+...+. .++++
T Consensus 82 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~ 157 (196)
T 3tkl_A 82 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG----IPFLE 157 (196)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT----CCEEE
T ss_pred HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC----CcEEE
Confidence 23466889999999999986443322 23333433 378999999999997654322 22333333333 68999
Q ss_pred eecCCCCChHHHHHHHHHHHhhcc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+||++|.|++++|+++.+.+....
T Consensus 158 ~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 158 TSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp ECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999988776543
No 146
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.74 E-value=6.4e-18 Score=182.15 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=106.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+.+||+|+|.+|||||||+++++.... .....|.+..+.....+..++. .+.+|||||+.+.. .. .
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----------~l-~ 79 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----------SL-I 79 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTTTCG----------GG-H
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh----------hH-H
Confidence 468999999999999999999996543 2323444455666666666665 56689999996553 11 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
..+++.+|++++|+|.++..+..... ++..+.. .+.|+++|+||+|+.+.... .+..+++.+..+ ++++++
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~----~~~~e~ 155 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN----VMFIET 155 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----CEEEEE
T ss_pred HHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC----CeeEEE
Confidence 25679999999999999875544432 3333332 46899999999999754322 222233444333 689999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||++|.||+++|+.|.+.+..
T Consensus 156 SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC--
T ss_pred eCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 147
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=179.80 Aligned_cols=162 Identities=18% Similarity=0.107 Sum_probs=103.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+.+||+++|.+|||||||+|+|++... ...+.+|+.+.....+..++. .+.+|||||+.+.. .. .
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~-~ 99 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD----------RL-R 99 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh----------HH-H
Confidence 479999999999999999999998653 234445655555556667665 67889999984332 11 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCccchHHHH----------HHHHHHhcc
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIK----------NNIKKKLNF 324 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~----------~~l~~~l~~ 324 (1250)
..+++.+|++++|+|++++.+..+. .++..+.+ .++|+++|+||+|+.+.....+.. ++.......
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 179 (214)
T 2j1l_A 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARS 179 (214)
T ss_dssp -----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHh
Confidence 2456899999999999986444443 24444444 379999999999998653221111 122222223
Q ss_pred CCCCeEEEeecCCCCChHHHHHHHHHHHhhc
Q psy17091 325 LSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 325 ~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
.+..+++++||++|.|++++++++.+.+.+.
T Consensus 180 ~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 180 VGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 3445899999999999999999998876544
No 148
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.74 E-value=7.1e-18 Score=203.38 Aligned_cols=161 Identities=29% Similarity=0.456 Sum_probs=124.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchh-hHHHHHHHH-HHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK-KGIMHEMTK-QTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~-~~~~~~ 80 (1250)
++|+++|.+|||||||+|+|++.....+++.+++|++.....+.+++..+.||||||+..... ....+.+.. ....++
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~ 275 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 275 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHH
T ss_pred ceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHH
Confidence 589999999999999999999988788999999999999889999999999999999743210 000112222 344578
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-----hhHH-----hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-----LDFY-----ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-----~~~~-----~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++|+|+|+++++...+..+..++...++|+++|+||+|+.+.... .+.. ..+..+++++||++|.|
T Consensus 276 ~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 355 (456)
T 4dcu_A 276 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKR 355 (456)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTT
T ss_pred hhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcC
Confidence 8999999999999999999999999999999999999999999765432 1111 12345789999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 356 v~~l~~~i~~~~~ 368 (456)
T 4dcu_A 356 IHTLMPAIIKASE 368 (456)
T ss_dssp GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 149
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.74 E-value=1.4e-17 Score=171.50 Aligned_cols=156 Identities=20% Similarity=0.168 Sum_probs=109.5
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
+++|+++|.+|||||||+|++++.... ....+++.+.....+.+++.. +.+|||||+.+.. . ...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~-~~~ 69 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA----------S-MRD 69 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----------H-HHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH----------H-HHH
Confidence 689999999999999999999976532 234455555555666676654 8899999985432 1 122
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
.+++.+|++++|+|+++..+.++. .++..+.+ .+.|+++|+||+|+.+.... .+..+.+.+..+ .+++++
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~ 145 (167)
T 1kao_A 70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG----CPFMET 145 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT----SCEEEE
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC----CCEEEe
Confidence 456789999999999986443332 23333333 47999999999999754322 222233333332 589999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||++|.|++++++++.+.+.+
T Consensus 146 Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 146 SAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999877643
No 150
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.74 E-value=6.1e-18 Score=176.82 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=106.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+.+||+++|.+|||||||+|+|++..... +..|+.+.....+.+++. .+.+|||||+.+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------------- 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------------- 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch----------------
Confidence 46999999999999999999999866543 233433444556666664 567899999843
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH------cCCcEEEEEeccccCCcc---chHHHHHHHHHHhccCCCC
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE------SGRSLIVCVNKWDSIIHN---QRKIIKNNIKKKLNFLSFA 328 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~------~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~l~~~~~~ 328 (1250)
..+++.+|++++|+|++++.+..+.. ++.++.+ .+.|+++|+||+|+.+.. ...+..+.+.+.. ...
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~---~~~ 143 (178)
T 2iwr_A 67 AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM---KRC 143 (178)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH---SSE
T ss_pred hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh---cCC
Confidence 13557799999999999875544443 2223333 378999999999995211 1112222222222 246
Q ss_pred eEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 329 MFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 329 ~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+++++||++|.|++++|+++.+.+..
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHHHHHH
Confidence 89999999999999999999876643
No 151
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.74 E-value=5.7e-18 Score=179.42 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=108.7
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|++.+.......+..+. ....+.+++..+.+|||||+.+.... ...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~ 86 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHP----TSEELAIGNIKFTTFDLGGHIQARRL-----------WKD 86 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSC----EEEEEEETTEEEEEEECCCSGGGTTS-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCC----CeEEEEECCEEEEEEECCCCHHHHHH-----------HHH
Confidence 468999999999999999999998765443333333 34677888999999999999543211 124
Q ss_pred hhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhcc-----------
Q psy17091 261 SILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF----------- 324 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~----------- 324 (1250)
+++.+|++++|+|++++.+.++. .++..+.+ .+.|+++|+||+|+.+....++ +.+.+..
T Consensus 87 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~ 162 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE----LRSALGLLNTTGSQRIEG 162 (190)
T ss_dssp GCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHH----HHHHTTCSSCCC---CCS
T ss_pred HHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHH----HHHHhCCccccccccccc
Confidence 56899999999999987554433 23344432 5799999999999976333333 3333321
Q ss_pred CCCCeEEEeecCCCCChHHHHHHHHH
Q psy17091 325 LSFAMFNFISAIKLNNINSFMESINH 350 (1250)
Q Consensus 325 ~~~~~iv~iSA~~g~gv~~l~~~i~~ 350 (1250)
....+++++||++|.|++++++++.+
T Consensus 163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 163 QRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cceEEEEEeECCcCCCHHHHHHHHHh
Confidence 23468999999999999999999864
No 152
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.74 E-value=1.8e-17 Score=173.35 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=113.7
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+.++|+++|.+|||||||+|+|++.. ..+..++|+.+.....+.+++. .+.+|||||+.+.... .
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-----------~ 74 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM-----------R 74 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC-----------H
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH-----------H
Confidence 46999999999999999999999763 3446677777666666777764 6778999998654321 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHH----HcCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIY----ESGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
..+++.+|++++|+|+++..+.... .++..+. ..++|+++|+||+|+.+.... .+..+.+.... ..++++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 150 (181)
T 2fn4_A 75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH----HVAYFE 150 (181)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT----TCEEEE
T ss_pred HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc----CCeEEE
Confidence 2345779999999999985333322 2333332 247899999999999764332 22223333322 368999
Q ss_pred eecCCCCChHHHHHHHHHHHhhcc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+||++|.|++++++++.+.+.+..
T Consensus 151 ~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 151 ASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred ecCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999988775543
No 153
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.74 E-value=1.6e-18 Score=207.11 Aligned_cols=159 Identities=26% Similarity=0.401 Sum_probs=117.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|+||||||||+|+|++...+++.+.|++|++.....+.+++..+.||||||+.+.. +.+.....+.+..++..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~-~~ve~~gi~~~~~~~~~ 303 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS-DQVEKIGVERSRQAANT 303 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------CCCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch-hHHHHHHHHHHhhhhhc
Confidence 47999999999999999999998877899999999999988889999999999999986432 22222233456667889
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccchhHHhc-CCCCcEecccccCCchhHHHHHHHHh
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISLDFYEL-GIGNPHIISALYGNGIKNFLENILTI 161 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-~~~~~~~iSA~~g~gi~~L~~~i~~~ 161 (1250)
+|++++|+|++++.+..+..+.+.+. .+|+++|+||+|+...........+ ...+++++||++|.|+++|++.+.+.
T Consensus 304 aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEI 381 (462)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999988887777777665 4799999999999765443111111 22367999999999999999999987
Q ss_pred hCC
Q psy17091 162 ELP 164 (1250)
Q Consensus 162 l~~ 164 (1250)
+..
T Consensus 382 ~~~ 384 (462)
T 3geh_A 382 VQT 384 (462)
T ss_dssp HTT
T ss_pred Hhc
Confidence 653
No 154
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.74 E-value=4.7e-18 Score=182.28 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=113.3
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEE--EEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYI--LIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~--liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
.+.+||+++|.+|||||||+|++++... .....+|+.+.....+.+++..+. +|||||+.+... .
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~ 94 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-----------L 94 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT-----------T
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH-----------H
Confidence 3479999999999999999999996532 345667777777777777776555 899999943321 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEeccccCCccchHHH----------HHHHHHHhc
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRKII----------KNNIKKKLN 323 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~----------~~~l~~~l~ 323 (1250)
...+++.+|++++|+|++++.+.++. .++..+.+. ++|+++|+||+|+.+.....+. .++......
T Consensus 95 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 4gzl_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 174 (204)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHH
Confidence 12467899999999999987655554 345555554 8999999999999765332111 112223333
Q ss_pred cCCCCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 324 FLSFAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 324 ~~~~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
..+..+++++||++|.|++++++++.+.
T Consensus 175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 175 EIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred hcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 4445689999999999999999998764
No 155
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=1.2e-17 Score=176.26 Aligned_cols=159 Identities=27% Similarity=0.350 Sum_probs=118.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
++|+++|.+|||||||+|+|++.. ..++..|++|.+...+.+.+++..+.+|||||+.........+.+...... ...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~ 85 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEK 85 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH-HHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh-ccC
Confidence 589999999999999999999876 347888999999999999999999999999998754311112222222221 146
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCchhHHHHH
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi~~L~~~ 157 (1250)
+|++++|+|.++ ......+...+...+.|+++|+||+|+...... .++. ..+. +++++||++|.|++++++.
T Consensus 86 ~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~ 162 (188)
T 2wjg_A 86 PDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKA 162 (188)
T ss_dssp CSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTS-CEEECBGGGTBSHHHHHHH
T ss_pred CCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCC-CeEEEEecCCCCHHHHHHH
Confidence 999999999875 233344555666678999999999998643322 2332 3354 7899999999999999999
Q ss_pred HHHhhCCcc
Q psy17091 158 ILTIELPYK 166 (1250)
Q Consensus 158 i~~~l~~~~ 166 (1250)
+.+.+....
T Consensus 163 i~~~~~~~~ 171 (188)
T 2wjg_A 163 ISIAVKDKK 171 (188)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHhcc
Confidence 998876543
No 156
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.74 E-value=7.6e-18 Score=174.30 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=108.7
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcce-eccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRV-ITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+.++|+++|.+|||||||+|+|++.... ...+..|++... ..+.+++ ..+.+|||||+.+.. ..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~ 71 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERFR-----------AL 71 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhhh-----------cc
Confidence 4799999999999999999999986632 223445555443 3344444 578899999984321 11
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+.++. .++..+.. .+.|+++|+||+|+.+.... .+..+.+.+.. ..++++
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 147 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI----HAIFVE 147 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT----TCEEEE
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc----CCEEEE
Confidence 22466889999999999987554443 34455544 36789999999999764332 22233333332 368999
Q ss_pred eecCCCCChHHHHHHHHHHH
Q psy17091 333 ISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~ 352 (1250)
+||++|.|++++++++.+.+
T Consensus 148 ~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 148 TSAKNAININELFIEISRRI 167 (170)
T ss_dssp CBTTTTBSHHHHHHHHHHHC
T ss_pred EeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999997765
No 157
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.74 E-value=1.6e-17 Score=171.31 Aligned_cols=155 Identities=19% Similarity=0.146 Sum_probs=107.3
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.+||+++|.+|||||||+|+|++... .....+|+.+.....+..++ ..+.+|||||+.+... ...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~~~ 69 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-----------MRD 69 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-----------HHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-----------HHH
Confidence 58999999999999999999997543 22344555554444455554 4678899999865431 112
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
.+++.+|++++|+|+++..+..+. .++..+.+ .++|+++|+||+|+.+.... .+..+.+.+. ....+++++
T Consensus 70 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~ 146 (167)
T 1c1y_A 70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ---WCNCAFLES 146 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH---TTSCEEEEC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH---ccCCcEEEe
Confidence 455779999999999875333332 23333433 37999999999999754322 2222222222 335789999
Q ss_pred ecCCCCChHHHHHHHHHHH
Q psy17091 334 SAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~ 352 (1250)
||++|.|++++++++.+.+
T Consensus 147 Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 147 SAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999997764
No 158
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.74 E-value=1.6e-17 Score=174.17 Aligned_cols=159 Identities=19% Similarity=0.136 Sum_probs=111.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+.++|+++|.+|||||||+|+|++.. ....+++|+.+.....+..++. .+.+|||||+.+.... .
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~ 71 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF-----------P 71 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC-----------C
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH-----------H
Confidence 47999999999999999999999654 3445566666665666777774 5689999998665321 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHH----HcCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIY----ESGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~----~~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
..+++.+|++++|+|+++..+..... ++..+. ..++|+++|+||+|+.+.... .+..+.+.+.. ..++++
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 147 (181)
T 3t5g_A 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW----NAAFLE 147 (181)
T ss_dssp GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT----TCEEEE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHh----CCcEEE
Confidence 24567899999999999854433322 222332 247999999999999754322 22233333333 358999
Q ss_pred eecCCCCChHHHHHHHHHHHhhcc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+||++|.|++++|+++.+.+....
T Consensus 148 ~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 148 SSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred EecCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999988776544
No 159
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.74 E-value=3e-17 Score=173.61 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=110.3
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
.++++|+++|.+|||||||+|+|++... .....+|+.+.....+.+++. .+.+|||||+.+.. . .
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~-~ 85 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----------A-M 85 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHH----------H-H
Confidence 3579999999999999999999997643 335566666666666777765 48889999984322 1 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|+++..+..+.. ++..+.. .++|+++|+||+|+.+.....+..+++.+..+ .++++
T Consensus 86 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~ 161 (190)
T 3con_A 86 RDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG----IPFIE 161 (190)
T ss_dssp ----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT----CCEEE
T ss_pred HHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC----CeEEE
Confidence 235678999999999998864433332 3333333 37999999999999763322233333433333 58999
Q ss_pred eecCCCCChHHHHHHHHHHHhhc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
+||++|.|++++++++.+.+...
T Consensus 162 ~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 162 TSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998877543
No 160
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.74 E-value=4.3e-17 Score=168.03 Aligned_cols=156 Identities=17% Similarity=0.108 Sum_probs=108.2
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+.+||+++|.+|||||||+|+|++... ....++|+.+.....+.+++. .+.+|||||+.+.. ...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-----------~~~ 69 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-----------AIR 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-----------HHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-----------HHH
Confidence 468999999999999999999997653 335556666665566667664 68899999985432 112
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
..+++.+|++++|+|+++..+.... .++..+.+ .++|+++|+||+|+.+.... .+..+.+.+.. ..++++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 145 (168)
T 1u8z_A 70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW----NVNYVE 145 (168)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH----TCEEEE
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHc----CCeEEE
Confidence 3456789999999999976433332 23333333 37999999999999754322 11222222222 258999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q psy17091 333 ISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+||++|.|++++++++.+.+.
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 146 TSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 161
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3e-17 Score=176.41 Aligned_cols=160 Identities=17% Similarity=0.192 Sum_probs=111.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|++++....+++.+++++.+.....+.+++.. +.+|||+|... .+.+ .
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~-------~~~~--l- 104 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG-------ENEW--L- 104 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH-------HHHH--H-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc-------hhhh--H-
Confidence 3469999999999999999999998665555566667777666777787765 56799999832 1111 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFN 331 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv 331 (1250)
...+++.+|++++|+|+++..+..... ++..+.+ .++|+++|+||+|+.+..... +..+.+.... .++++
T Consensus 105 ~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~----~~~~~ 180 (211)
T 2g3y_A 105 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF----DCKFI 180 (211)
T ss_dssp HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEE
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHc----CCEEE
Confidence 234568899999999998864443332 3333433 379999999999997532221 1112222222 26899
Q ss_pred EeecCCCCChHHHHHHHHHHHh
Q psy17091 332 FISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 332 ~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
++||++|.|++++|+++.+.+.
T Consensus 181 e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 181 ETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 162
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=5e-18 Score=175.56 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=107.3
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.++|+++|.+|||||||+|+|++..... ...|.++.+.....+.+++. .+.+|||||+.+.. ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~~ 70 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-----------SLAP 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-----------hhhh
Confidence 6899999999999999999999765332 23344444444455566554 78899999984321 1123
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCcc---c-hHHHHHHHHHHhccCCCCeEE
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHN---Q-RKIIKNNIKKKLNFLSFAMFN 331 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~---~-~~~~~~~l~~~l~~~~~~~iv 331 (1250)
.+++.+|++++|+|++++.+..+. .++..+.+ .+.|+++|+||+|+.+.. . ..+..+.+.+.. ..+++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~----~~~~~ 146 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK----GLLFF 146 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH----TCEEE
T ss_pred hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc----CCEEE
Confidence 566899999999999986443333 23334433 378999999999997541 1 122233333333 25899
Q ss_pred EeecCCCCChHHHHHHHHHHH
Q psy17091 332 FISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 332 ~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
++||++|.|++++++++.+.+
T Consensus 147 ~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 147 ETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp ECCTTTCTTHHHHHHHHHTTS
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999987654
No 163
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=8.9e-18 Score=178.18 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=110.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcce-eccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV-ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
++.+||+++|.+|||||||+|+|++.... ...+.+|++.......+...+..+.+|||||+.+... ..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~ 89 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS-----------LA 89 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG-----------GT
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh-----------hh
Confidence 45799999999999999999999986643 3455666665443333322345789999999843221 12
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
..+++.+|++++|+|+++..+.++. .++..+.+ .++|+++|+||+|+.+..... .+++.+..... ..+++++|
T Consensus 90 ~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~~~~~~~~-~~~~~~~S 166 (192)
T 2fg5_A 90 PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP--LKDAKEYAESI-GAIVVETS 166 (192)
T ss_dssp HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHTT-TCEEEECB
T ss_pred HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHHc-CCEEEEEe
Confidence 2466889999999999987443333 23444444 279999999999997532211 12222222222 36899999
Q ss_pred cCCCCChHHHHHHHHHHHhh
Q psy17091 335 AIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (1250)
|++|.|++++++++.+.+.+
T Consensus 167 a~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC-
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999876543
No 164
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.5e-17 Score=172.34 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=110.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.........++++.+.....+.+++. .+.+|||||.. ++...+..++
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~---------~~~~~~~~~~ 81 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE---------RFRSVTHAYY 81 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------CCG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH---------HHHHHHHHHc
Confidence 489999999999999999999887644456677777877777777775 78999999975 3344566778
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 160 (180)
T 2g6b_A 82 RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL-PFMETSAKTGLN 160 (180)
T ss_dssp GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC-CEEECCTTTCTT
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999999987432222 223333333 46899999999999765433 2222 3455 789999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+..
T Consensus 161 i~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 161 VDLAFTAIAKELKR 174 (180)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 165
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.73 E-value=6.3e-18 Score=179.64 Aligned_cols=160 Identities=11% Similarity=-0.006 Sum_probs=107.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCC-------CCcceeeEEE--EE-EEc--CeeEEEEecCCCCCCCcch
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDT-------PGTTRDSIKS--LF-EYN--NKKYILIDTAGIRRRNKTF 247 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~-------~gtT~~~~~~--~~-~~~--~~~~~liDTpG~~~~~~~~ 247 (1250)
...+||+++|.+|||||||+|.+.+.......+. ...|...... .+ ..+ +..+.+|||||+.+...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-- 89 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA-- 89 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH--
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH--
Confidence 3579999999999999999998876543221110 0112111111 01 112 34688999999965431
Q ss_pred hhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHH----HHHH-----cCCcEEEEEeccccCCccchHHHHHHH
Q psy17091 248 EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIAN----FIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNI 318 (1250)
Q Consensus 248 ~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~----~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~l 318 (1250)
....+++.+|++++|+|++++.+.++...+. ++.+ .+.|+++|+||+|+.+.... +++
T Consensus 90 ---------~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~ 156 (198)
T 3t1o_A 90 ---------SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPV----EMV 156 (198)
T ss_dssp ---------HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCH----HHH
T ss_pred ---------HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCH----HHH
Confidence 1224678999999999999765555544433 3333 47999999999999765333 233
Q ss_pred HHHhccCCCCeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 319 KKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 319 ~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
.+.+...+..+++++||++|.|++++++++.+.+..
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 444444444489999999999999999999877654
No 166
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=176.19 Aligned_cols=160 Identities=18% Similarity=0.095 Sum_probs=108.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+..+||+++|.+|||||||+|+|++..... ...+.++.+.....+.+++ ..+.+|||||+.+ +.. .
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~-~ 94 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER----------FRT-I 94 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGG----------GHH-H
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh----------HHH-H
Confidence 457999999999999999999999765322 2334444566566777776 4788999999832 221 2
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|+++..+.++. .++..+.. .+.|+++|+||+|+.+.... .+..+++.+. .+..++++
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~---~~~~~~~~ 171 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEH---YDILCAIE 171 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH---TTCSEEEE
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHH---cCCCEEEE
Confidence 33567899999999999886443332 34444443 46899999999999753222 1122222222 33348999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++++++.+.+..
T Consensus 172 ~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 172 TSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999877654
No 167
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.73 E-value=7.1e-17 Score=165.86 Aligned_cols=155 Identities=16% Similarity=0.156 Sum_probs=110.6
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.++|+++|.+|||||||+|+|++... ....++++.+.....+..++. .+.+|||||+.+... ...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~~~ 69 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-----------MRD 69 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH-----------HHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH-----------HHH
Confidence 58999999999999999999997643 234455655555566666664 467899999865431 112
Q ss_pred HhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 260 KSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
.+++.+|++++|+|+++..+..+. .++..+.. .++|+++|+||+|+.+.....+..+++.+..+ .+++++|
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~S 145 (166)
T 2ce2_X 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG----IPYIETS 145 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT----CCEEEEC
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC----CeEEEec
Confidence 456789999999999876433332 23333333 27999999999999864333333444444443 5899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q psy17091 335 AIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (1250)
|++|.|++++++++.+.+.
T Consensus 146 a~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 146 AKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 168
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.73 E-value=1.4e-17 Score=175.05 Aligned_cols=161 Identities=16% Similarity=0.083 Sum_probs=112.7
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+.++|+++|.+|||||||+|+|++... ...+.+|+.+.....+..++.. +.+|||||+.+... ..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~ 70 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-----------LR 70 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-----------TG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH-----------HH
Confidence 469999999999999999999997543 3345556666655666777654 55899999943321 11
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEeccccCCccchHHH----------HHHHHHHhcc
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRKII----------KNNIKKKLNF 324 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~----------~~~l~~~l~~ 324 (1250)
..+++.+|++++|+|++++.+.++. .++..+.+. ++|+++|+||+|+.+.....+. .++.......
T Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (186)
T 1mh1_A 71 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 150 (186)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh
Confidence 2466889999999999987555544 355555554 8999999999999764321111 1112222222
Q ss_pred CCCCeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 325 LSFAMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 325 ~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
.+..+++++||++|.|++++++++.+.+..
T Consensus 151 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 151 IGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred cCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 333589999999999999999999877643
No 169
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.8e-17 Score=175.71 Aligned_cols=159 Identities=19% Similarity=0.137 Sum_probs=113.4
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+..+||+++|.+|||||||+|+|++.... ....+.++.+.....+.+++. .+.+|||||+.+ +.. .
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~-~ 91 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRS-I 91 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHH-H
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHH-H
Confidence 34799999999999999999999976532 334555666776677777774 688899999832 221 2
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|+++..+.+.. .++..+.. .+.|+++|+||+|+.+.... .+..+.+.+.. ..++++
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 167 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ----DMYYLE 167 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH----TCCEEE
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc----CCEEEE
Confidence 34677899999999999886443322 23344433 36899999999999754322 22222333322 268999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++|+++.+.+..
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 168 TSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999877654
No 170
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.73 E-value=2.6e-17 Score=172.30 Aligned_cols=159 Identities=16% Similarity=0.126 Sum_probs=110.3
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|+|++...... ..+.++.+.....+.+++ ..+.+|||||+.+... .
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 77 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-----------L 77 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT-SCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG-----------G
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCc-CCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh-----------h
Confidence 3579999999999999999999997654332 334444444445555654 4788999999843221 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHH-HHHHHHHHHc---CCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQD-INIANFIYES---GRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d-~~~~~~~~~~---~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+.++ ..++..+.+. +.|+++|+||+|+.+.... .+..+.+.+.. ..++++
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 153 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN----GLFFME 153 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT----TCEEEE
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc----CCEEEE
Confidence 2245688999999999988654333 3445555543 7899999999999754322 22222222222 368999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++++++.+.+..
T Consensus 154 ~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 154 TSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CCSSSCTTHHHHHHHHHHTCC-
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999877643
No 171
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.73 E-value=3.8e-17 Score=186.43 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=122.4
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEE-cCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
.+||+++|.+|||||||+|++++.....+++.+++|.+.....+.+ ++.++.+|||||+.+. .+.+.......
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~~ 76 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKDH 76 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHHH
Confidence 5899999999999999999999876667778899999988888776 5678999999998321 12222223345
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHH-HHHHHH-----cCCcEEEEEeccccCCccchH----HHHHHHHHHhccCC--CC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINI-ANFIYE-----SGRSLIVCVNKWDSIIHNQRK----IIKNNIKKKLNFLS--FA 328 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~-~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~----~~~~~l~~~l~~~~--~~ 328 (1250)
+++.+|++++|+|+++..+.++... ..++.+ .++|+++|+||+|+.+..... ...+++.+.....+ ..
T Consensus 77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~ 156 (307)
T 3r7w_A 77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL 156 (307)
T ss_dssp HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCe
Confidence 6789999999999999877666543 333333 279999999999998743333 33344555555444 37
Q ss_pred eEEEeecCCCCChHHHHHHHHHHH
Q psy17091 329 MFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 329 ~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
+++++||++ .|+.+++..+...+
T Consensus 157 ~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 157 IGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp EEEECCTTS-SHHHHHHHHHHHTT
T ss_pred EEEEeeecC-ChHHHHHHHHHHHH
Confidence 999999999 78888888776543
No 172
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.73 E-value=1.2e-17 Score=179.90 Aligned_cols=152 Identities=20% Similarity=0.136 Sum_probs=104.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.||++||.+|||||||+++++..... ....|++..+.....+..++ ..+.||||+|++.. ......++
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~-~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~---------~~l~~~~~ 83 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF---------RSLIPSYI 83 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTTC---------GGGHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCC-CCcCCccceEEEEEEEEecceEEEEEEEECCCchhh---------hhHHHHHh
Confidence 58999999999999999999977642 33456566677666666666 47789999998733 34456678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++++|+|.++..+... ..|...++. .+.|+++|+||+|+.+...+ .++. ..+. .++++||++|.|
T Consensus 84 ~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~SAktg~n 162 (216)
T 4dkx_A 84 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNV-MFIETSAKAGYN 162 (216)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEEBTTTTBS
T ss_pred ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCC-eeEEEeCCCCcC
Confidence 99999999999987322222 123333332 46799999999999765544 2222 4455 689999999999
Q ss_pred hhHHHHHHHHhhCCc
Q psy17091 151 IKNFLENILTIELPY 165 (1250)
Q Consensus 151 i~~L~~~i~~~l~~~ 165 (1250)
|+++|+.|.+.+...
T Consensus 163 V~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 163 VKQLFRRVAAALPGM 177 (216)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999877543
No 173
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.73 E-value=2e-17 Score=170.68 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=110.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||+|+|++.... ....+.++.+.....+.+++. .+.+|||||+.+.... .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~ 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI-----------T 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC-----------C
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH-----------H
Confidence 4699999999999999999999976532 224455555666666776654 7888999997443211 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEee
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
..+++.+|++++|+|+++..+.++. .++..+.. .+.|+++|+||+|+.+.... .+..+.+.+..+ .+++++|
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~S 147 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK----LRFYRTS 147 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT----CEEEECB
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC----CeEEEEe
Confidence 2456889999999999886433332 23333333 38999999999999754322 222233333332 5899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q psy17091 335 AIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~ 353 (1250)
|++|.|++++++++.+.+.
T Consensus 148 a~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 148 VKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp TTTTBSSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 9999999999999977653
No 174
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=1.7e-17 Score=178.92 Aligned_cols=158 Identities=22% Similarity=0.186 Sum_probs=114.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.+|||||+.+.... .
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~ 86 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI-----------T 86 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC-----------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH-----------H
Confidence 469999999999999999999997653 334567777777777788877 57889999998433211 2
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEee
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFIS 334 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iS 334 (1250)
..+++.+|++++|+|++++.+..+. .++..+.. .++|+++|+||+|+.+.....+..+.+..... .+++++|
T Consensus 87 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~S 162 (213)
T 3cph_A 87 TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG----IPFIESS 162 (213)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT----CCEEECB
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC----CEEEEEe
Confidence 3466889999999999886443332 34444443 37899999999999543332333334444333 5899999
Q ss_pred cCCCCChHHHHHHHHHHHhh
Q psy17091 335 AIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 335 A~~g~gv~~l~~~i~~~~~~ 354 (1250)
|++|.|++++++++.+.+.+
T Consensus 163 a~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 163 AKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999776543
No 175
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.73 E-value=2.7e-17 Score=173.20 Aligned_cols=159 Identities=17% Similarity=0.121 Sum_probs=112.6
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+..+||+++|.+|||||||+|+|++..... ...+.++.+.....+..++ ..+.+|||||+.+ +. ..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~-~~ 75 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER----------FR-SV 75 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG----------GH-HH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH----------HH-HH
Confidence 357999999999999999999999765433 3455666666666677776 4788999999832 22 12
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+.++.. ++..+.. .+.|+++|+||+|+.+..... ...+.+.... ..++++
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 151 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQEN----ELMFLE 151 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT----TCEEEE
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc----CCEEEE
Confidence 346778999999999999864433322 3333332 578999999999997533221 1122222222 368999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++++++.+.+..
T Consensus 152 ~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 152 TSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998776543
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.73 E-value=9.4e-19 Score=210.36 Aligned_cols=187 Identities=22% Similarity=0.230 Sum_probs=133.8
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCccee------------------------c------cCCCCcceeeEEEEEEEcCe
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI------------------------T------YDTPGTTRDSIKSLFEYNNK 230 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~------------------------~------~~~~gtT~~~~~~~~~~~~~ 230 (1250)
..++|+++|++|+|||||+|+|++....+ + ...+|+|.+.....+..++.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 46999999999999999999998641000 0 11378999888888888899
Q ss_pred eEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCH-------HHHHHHHHHHHcCCc-EEEEEec
Q psy17091 231 KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISA-------QDINIANFIYESGRS-LIVCVNK 302 (1250)
Q Consensus 231 ~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~-------~d~~~~~~~~~~~~p-~iiv~NK 302 (1250)
.+.+|||||+.+ |. .....+++.+|++++|+|++++..+ +..+.+..+...+.| +|+|+||
T Consensus 86 ~~~iiDtPGh~~----------f~-~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK 154 (458)
T 1f60_A 86 QVTVIDAPGHRD----------FI-KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK 154 (458)
T ss_dssp EEEEEECCCCTT----------HH-HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred eEEEEECCCcHH----------HH-HHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 999999999843 22 2345678999999999999987544 677777777778886 9999999
Q ss_pred cccCC--ccchHHHHHHHHHHhccCCC----CeEEEeecCCCCChHHHHHHHHHHHhhcccccChhHH-HHHHHHHHHcC
Q psy17091 303 WDSII--HNQRKIIKNNIKKKLNFLSF----AMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRI-TRALISAIKNH 375 (1250)
Q Consensus 303 ~Dl~~--~~~~~~~~~~l~~~l~~~~~----~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l-~~~l~~~~~~~ 375 (1250)
+|+.+ ....+...+++.+.+...++ .+++++||++|.|++++.+. ..++..+..+++++.+ +..|.++++..
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~-~~~~~~~~~~~~tg~~~~~~Ll~~l~~~ 233 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTN-APWYKGWEKETKAGVVKGKTLLEAIDAI 233 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSS-CTTCCCEEEECSSSEEEESSHHHHHHTS
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccccc-CchhhcccccccccccchHHHHHHhhcc
Confidence 99984 23334455555555443332 68999999999999877543 2455555555665532 33445556665
Q ss_pred CCcc
Q psy17091 376 PPCR 379 (1250)
Q Consensus 376 ~~~~ 379 (1250)
+||.
T Consensus 234 ~~p~ 237 (458)
T 1f60_A 234 EQPS 237 (458)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 5553
No 177
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.73 E-value=4.3e-17 Score=170.04 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=109.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....|+++.+.....+.+++. .+.+|||||.. ++......++
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 77 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE---------RFRSLRTPFY 77 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCG---------GGHHHHGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch---------hhhhhHHHHH
Confidence 58999999999999999999987643 445566777777777778774 89999999975 2334456678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCCEEEEEeCCCCCCCccc----hhHHh-cCCCCcEeccccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK-------SGQPIVLVINKSENINSSIS----LDFYE-LGIGNPHIISALY 147 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~-------~~~p~ilv~NK~D~~~~~~~----~~~~~-~~~~~~~~iSA~~ 147 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++.. ....+++++||++
T Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (177)
T 1wms_A 78 RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKD 157 (177)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTT
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 89999999999987432221 223333322 46799999999999743322 33333 3444789999999
Q ss_pred CCchhHHHHHHHHhhCC
Q psy17091 148 GNGIKNFLENILTIELP 164 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~ 164 (1250)
|.|++++++.+.+.+..
T Consensus 158 ~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 158 ATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887643
No 178
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.73 E-value=3.4e-17 Score=174.21 Aligned_cols=161 Identities=15% Similarity=0.113 Sum_probs=113.6
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|+|.+..... ...++++.+.....+.+++. .+.+|||||+.+.. .+.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~~--- 89 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG-------GWL--- 89 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG-------HHH---
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCccch-------hhh---
Confidence 346999999999999999999998754333 35677777777777778775 55679999995321 111
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv 331 (1250)
...+++.+|++++|+|+++..+.... .++..+.. .++|+++|+||+|+.+.... .+..+.+.+.. ..+++
T Consensus 90 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~----~~~~~ 165 (195)
T 3cbq_A 90 RDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL----SCKHI 165 (195)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT----TCEEE
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHh----CCEEE
Confidence 12356789999999999886443322 23444443 37999999999999754322 12222333332 25899
Q ss_pred EeecCCCCChHHHHHHHHHHHhhc
Q psy17091 332 FISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 332 ~iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
++||++|.|++++|+++.+.+...
T Consensus 166 e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 166 ETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998876543
No 179
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.73 E-value=3.8e-17 Score=173.60 Aligned_cols=151 Identities=20% Similarity=0.133 Sum_probs=114.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....+++|.+.....+.+++ ..+.+|||||.... ......++
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 86 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF---------RTITSSYY 86 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG---------CTTHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh---------hhhHHHHH
Confidence 48999999999999999999987644 55677888888888888887 47999999997532 23455667
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|
T Consensus 87 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 165 (196)
T 3tkl_A 87 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLETSAKNATN 165 (196)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEEECTTTCTT
T ss_pred hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-cEEEEeCCCCCC
Confidence 89999999999987322111 223333333 26899999999999765543 2232 3444 789999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+..
T Consensus 166 v~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 166 VEQSFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 180
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.73 E-value=3.7e-17 Score=173.14 Aligned_cols=159 Identities=21% Similarity=0.148 Sum_probs=110.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeE-EEEEEEcC-----------eeEEEEecCCCCCCCcch
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSI-KSLFEYNN-----------KKYILIDTAGIRRRNKTF 247 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~-~~~~~~~~-----------~~~~liDTpG~~~~~~~~ 247 (1250)
+..+||+++|.+|||||||+|+|++..... ...+.++.+.. ...+..++ ..+.+|||||+.+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER----- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-----
Confidence 357999999999999999999999765322 23333333433 33444443 4789999999832
Q ss_pred hhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHH-HHHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHH
Q psy17091 248 EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQD-INIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKK 321 (1250)
Q Consensus 248 ~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d-~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~ 321 (1250)
+. .....+++.+|++++|+|++++.+..+ ..++..+.. .++|+++|+||+|+.+.... .+..+.+.+.
T Consensus 83 -----~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 156 (195)
T 3bc1_A 83 -----FR-SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK 156 (195)
T ss_dssp -----GH-HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred -----HH-HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 22 123467889999999999998654444 234444443 57999999999999753222 2223333333
Q ss_pred hccCCCCeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 322 l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
.+ .+++++||++|.|+++++++|.+.+..
T Consensus 157 ~~----~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 157 YG----IPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp HT----CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cC----CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 32 589999999999999999999887654
No 181
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=174.13 Aligned_cols=150 Identities=20% Similarity=0.193 Sum_probs=112.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
++|+++|.+|||||||+|+|++.... ....+++|.+.....+.+++ ..+.+|||||.... ......++
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 79 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF---------RTITSTYY 79 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC---------SSCCGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhh---------hhhHHHHh
Confidence 58999999999999999999988754 56678888888888888888 57999999996532 22334567
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHH---Hh--cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFL---RK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l---~~--~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|++++. ....+..|+ .. .+.|+++|+||+|+.+.... ..+. ..+. +++++||++|.
T Consensus 80 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (181)
T 3tw8_B 80 RGTHGVIVVYDVTSAE--SFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGI-QLFETSAKENV 156 (181)
T ss_dssp TTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-CEEECBTTTTB
T ss_pred ccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 8999999999998742 222333333 33 35899999999998765433 2222 3454 78999999999
Q ss_pred chhHHHHHHHHhhCCc
Q psy17091 150 GIKNFLENILTIELPY 165 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~~ 165 (1250)
|++++++.+.+.+...
T Consensus 157 gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 157 NVEEMFNCITELVLRA 172 (181)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998876543
No 182
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.73 E-value=1.8e-17 Score=170.84 Aligned_cols=148 Identities=20% Similarity=0.183 Sum_probs=91.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
..+|+++|.+|||||||+|+|++.....+.+.+++|.+. .+.+++ ..+.+|||||.. .+......+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 69 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQD---------GGRWLPGHC 69 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEEEEEEEEECCCCc---------cchhhhhhh
Confidence 368999999999999999999988766667777777643 334554 478899999976 333445566
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccC
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g 148 (1250)
+..+|++++|+|.+++.+... ..+...+.. .+.|+++|+||+|+.+.... ..+. ..+. +++++||++|
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (166)
T 3q72_A 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC-KFIETSAALH 148 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred hhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC-cEEEeccCCC
Confidence 789999999999986422111 123333333 36899999999999765443 2222 3343 7899999999
Q ss_pred CchhHHHHHHHHhh
Q psy17091 149 NGIKNFLENILTIE 162 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l 162 (1250)
.|++++++.+.+.+
T Consensus 149 ~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 149 HNVQALFEGVVRQI 162 (166)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 183
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.73 E-value=1.7e-17 Score=186.07 Aligned_cols=157 Identities=28% Similarity=0.369 Sum_probs=120.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.++|+++|.+|||||||+|+|++... .+++.|++|.+...+.+.+++..+.+|||||+.........+.+.... ....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNF-ILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHH-HHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHh-hhcc
Confidence 36899999999999999999999875 588999999999999999999999999999987644322222222222 2247
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcC-CCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCchhHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSG-QPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFL 155 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~-~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi~~L~ 155 (1250)
.+|++++|+|++.. .....+...+...+ .|+++|+||+|+.+.... ..+. .++. +++++||++|.|+++++
T Consensus 81 ~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~-~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 81 NADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGV-PVIPTNAKKGEGVEELK 157 (271)
T ss_dssp CCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSS-CEEECBGGGTBTHHHHH
T ss_pred CCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCC-cEEEEEeCCCCCHHHHH
Confidence 89999999999873 33334444455566 999999999997543322 2222 4455 78999999999999999
Q ss_pred HHHHHhhC
Q psy17091 156 ENILTIEL 163 (1250)
Q Consensus 156 ~~i~~~l~ 163 (1250)
+.+...+.
T Consensus 158 ~~i~~~~~ 165 (271)
T 3k53_A 158 RMIALMAE 165 (271)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987653
No 184
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.1e-17 Score=177.61 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=112.7
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..++|+++|.+|||||||+|+|++... ...+.+|+.+.....+.+++ ..+.+|||||+.+.... .
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 83 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL-----------R 83 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT-----------G
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH-----------H
Confidence 569999999999999999999997642 34556666666656666666 46788999999654311 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEeccccCCccch-------------HHHHHHHHHH
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQR-------------KIIKNNIKKK 321 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~-------------~~~~~~l~~~ 321 (1250)
..+++.+|++++|+|++++.+..+. .++..+.+. ++|+++|+||+|+.+.... .+....+.+.
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (194)
T 2atx_A 84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE 163 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHH
Confidence 2467889999999999986544443 355556554 8999999999999764211 1112222222
Q ss_pred hccCCCCeEEEeecCCCCChHHHHHHHHHHH
Q psy17091 322 LNFLSFAMFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 322 l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
+ +..+++++||++|.|++++++++.+.+
T Consensus 164 ~---~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 164 I---GACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp H---TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred c---CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2 334899999999999999999997764
No 185
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.73 E-value=2.3e-17 Score=169.73 Aligned_cols=147 Identities=19% Similarity=0.231 Sum_probs=104.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|+++|.+|||||||+|+|++... ....| |.+.....+.+++..+.+|||||+.. +...+..++.++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~~ 68 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQNT 68 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS--SCCCC--CSSCCEEEEECSSCEEEEEECCCCGG---------GHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc--CcccC--cCceeEEEEEECCEEEEEEEcCCChh---------hHHHHHHHhccC
Confidence 799999999999999999997763 23344 44455666777888999999999862 334556678999
Q ss_pred CEEEEEEeCCCCCChhh--HHHHHHHHh---cCCCEEEEEeCCCCCCCccchhHH-hcC-------CCCcEecccccCCc
Q psy17091 84 DIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELG-------IGNPHIISALYGNG 150 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~-~~~-------~~~~~~iSA~~g~g 150 (1250)
|++++|+|++++.+... ..+..++.. .+.|+++|+||+|+.+.....+.. ..+ .-+++++||++|.|
T Consensus 69 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 99999999987422221 122222222 378999999999997653321111 111 11478999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 149 i~~l~~~l~~~i~ 161 (164)
T 1r8s_A 149 LYEGLDWLSNQLR 161 (164)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987664
No 186
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.72 E-value=2.6e-17 Score=171.82 Aligned_cols=157 Identities=19% Similarity=0.178 Sum_probs=111.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+.++|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++. .+.+|||||+.+... ..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-----------~~ 80 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LI 80 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-----------GS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH-----------HH
Confidence 4699999999999999999999976543 335666777777777777774 788999999843321 11
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.... .+..+.+.... ..+++++
T Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~ 156 (179)
T 2y8e_A 81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL----NVMFIET 156 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH----TCEEEEE
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc----CCeEEEE
Confidence 2456789999999999875433222 23333332 47999999999999754322 12222222222 2689999
Q ss_pred ecCCCCChHHHHHHHHHHHh
Q psy17091 334 SAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~ 353 (1250)
||++|.|++++++++.+.+.
T Consensus 157 Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 157 SAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp BTTTTBSHHHHHHHHHHTCC
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999987654
No 187
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.72 E-value=4.7e-17 Score=171.84 Aligned_cols=167 Identities=28% Similarity=0.299 Sum_probs=113.5
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcch-hhHHHHHHHH--HH
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIK--TL 259 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~e~~~~~~--~~ 259 (1250)
+||+++|.+|||||||+|+|++.. ...+..||+|.+.....+ + .+.+|||||+....... ...+.+.... ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999876 455678898887754433 3 78999999975433211 1233443221 12
Q ss_pred Hh-hccCcEEEEEecCCCC-----------CCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCC-
Q psy17091 260 KS-ILEANVVILLLDAQQN-----------ISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLS- 326 (1250)
Q Consensus 260 ~~-~~~ad~vllviD~~~~-----------~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~- 326 (1250)
.. ...+++++.|+|++.. ...++..+...+...++|+++|+||+|+.+.. .+..+++.+.++...
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGG
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhhh
Confidence 22 4557788888887542 11223445556666789999999999997653 333444555554210
Q ss_pred --CCeEEEeecCCCCChHHHHHHHHHHHhhcc
Q psy17091 327 --FAMFNFISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 327 --~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
..+++++||++|.|++++++++.+.+....
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred ccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 135899999999999999999988775533
No 188
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.72 E-value=1.2e-17 Score=175.53 Aligned_cols=158 Identities=20% Similarity=0.119 Sum_probs=91.8
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..++|+++|.+|||||||+|+|++... .....|+++.+.....+.+++ ..+.+|||||+.+.. . ..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~-~~ 74 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----------T-IT 74 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC--------------------C
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh----------h-hH
Confidence 469999999999999999999997543 333456667777667777777 578899999984332 1 12
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
..+++.+|++++|+|++++.+.... .++..+.+ .+.|+++|+||+|+.+.... .+..+.+.+..+ .+++++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~----~~~~~~ 150 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG----IKFMET 150 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT----CEEEEC
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC----CeEEEE
Confidence 3567899999999999986443332 24444444 37899999999999754322 222233333332 589999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||++|.|++++++++.+.+..
T Consensus 151 Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 151 SAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp CC---CCHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999877643
No 189
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.72 E-value=3.6e-17 Score=174.76 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=108.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC-------------------------------
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN------------------------------- 229 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~------------------------------- 229 (1250)
+.+||+++|.+|||||||+|+|++.... ....+.++.+.....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 4699999999999999999999987543 22334444455445555544
Q ss_pred --------eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH-cCCcEEEE
Q psy17091 230 --------KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDIN-IANFIYE-SGRSLIVC 299 (1250)
Q Consensus 230 --------~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~-~~~p~iiv 299 (1250)
..+.+|||||+.+... ....+++.+|++++|+|++++.+.++.. ++..+.+ .+.|+++|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv 153 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILV 153 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred cccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 6789999999754321 1235678999999999999875544432 3444443 56999999
Q ss_pred EeccccCCccc-hHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 300 VNKWDSIIHNQ-RKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 300 ~NK~Dl~~~~~-~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||+|+.+... .++..+.. +. . ..+++++||++|.|++++++++.+.+..
T Consensus 154 ~NK~D~~~~~~~~~~~~~~~-~~---~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 154 ANKIDKNKFQVDILEVQKYA-QD---N-NLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp EECTTCC-CCSCHHHHHHHH-HH---T-TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EECCCcccccCCHHHHHHHH-HH---c-CCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999432221 22222222 22 2 3599999999999999999999876643
No 190
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.72 E-value=3.1e-17 Score=169.78 Aligned_cols=158 Identities=17% Similarity=0.104 Sum_probs=108.4
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|+|++.... ....+.++.+.....+.+++. .+.+|||||+.+.. . .
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~-~ 71 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH----------A-L 71 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh----------h-h
Confidence 34799999999999999999999976532 234555555555556666654 67789999984332 1 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+.++.. ++..+.+ .+.|+++|+||+|+.+.... .+..+.+.+.. ..++++
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 147 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV----GAKHYH 147 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT----TCEEEE
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHc----CCeEEE
Confidence 224668999999999998864433332 3333333 57999999999999764322 12222233322 268999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q psy17091 333 ISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+||++|.|++++++++.+.+.
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 148 TSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp EBTTTTBSHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987654
No 191
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.72 E-value=1.2e-17 Score=204.27 Aligned_cols=168 Identities=13% Similarity=0.082 Sum_probs=117.7
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.+||+|+|.||||||||+|+|++.+... .. .|.+.....+.+++..+.+|||||+.+.... ...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~--~~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~~~ 385 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT--TI--PTVGFNVETVTYKNVKFNVWDVGGQDKIRPL-----------WRH 385 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC--CC--CCSSEEEEEEESSSCEEEEEEECCCGGGSGG-----------GGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC--cC--CccceeEEEEEeCCEEEEEEECCCcHHHHHH-----------HHH
Confidence 46999999999999999999999876332 22 3556666777888899999999998543211 235
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++|+|+|++++.+..+.. .+..+.+ .++|+|+|+||+|+.+.....++.+.+..........+++++||
T Consensus 386 ~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 465 (497)
T 3lvq_E 386 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCA 465 (497)
T ss_dssp GGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBT
T ss_pred HhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEEC
Confidence 778999999999999875544433 3333333 47999999999999765444444443332222234568999999
Q ss_pred CCCCChHHHHHHHHHHHhhcccccChhH
Q psy17091 336 IKLNNINSFMESINHVYDSSIIHLSTSR 363 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~~~~~~~~~ 363 (1250)
++|.|+++++++|.+.+..+..+.+|..
T Consensus 466 ~~g~gi~~l~~~l~~~~~~~~~~~~~~~ 493 (497)
T 3lvq_E 466 TSGDGLYEGLTWLTSNYKSKLAAALEHH 493 (497)
T ss_dssp TTTBTHHHHHHHHHHHCC----------
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCccc
Confidence 9999999999999999888777766653
No 192
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.72 E-value=2e-17 Score=170.94 Aligned_cols=156 Identities=19% Similarity=0.116 Sum_probs=105.7
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceec-cCCCCcceeeEEEEEEEc--CeeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVIT-YDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~-~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+.+||+++|.+|||||||+|+|++...... .+..+++.. ...+.++ +..+.+|||||+.+.. ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~ 71 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFL--TQTVCLDDTTVKFEIWDTAGQERYH-----------SL 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE--EEEEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE--EEEEEECCEEEEEEEEeCCCcHHhh-----------hh
Confidence 579999999999999999999997654322 233333333 3344444 4578899999984321 11
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+.... .+....+... ...++++
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~ 147 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD----NSLLFME 147 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH----TTCEEEE
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHH----cCCeEEE
Confidence 23466889999999999986443332 23444443 36899999999999753322 1112222222 2368999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q psy17091 333 ISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+||++|.|+++++++|.+.+.
T Consensus 148 ~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 148 TSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CCTTTCTTHHHHHHHHHHTSC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999977653
No 193
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=7.7e-17 Score=177.37 Aligned_cols=177 Identities=15% Similarity=0.190 Sum_probs=114.4
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCC--CcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP--GTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~--gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...++|+++|.+|||||||+|+|++.... .+..+ ++|.+.....+.+++..+.||||||+.+.......+.+.....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 34799999999999999999999997764 33444 7899998889999999999999999976543222222222223
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHH-----cCCcEEEEEeccccCCccchHHHH----HHHHHHhccCCCC
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDINIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIK----NNIKKKLNFLSFA 328 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~----~~l~~~l~~~~~~ 328 (1250)
...+.+.+|++|+|+|++. .+..+..++..+.+ ..+|+++|+||+|+.+.....++. +.++..+...+ .
T Consensus 106 ~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~-~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG-D 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS-S
T ss_pred HHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC-C
Confidence 3355678999999999974 55566666666643 357999999999998654443221 12333332222 3
Q ss_pred eEEEeecCCC-----CChHHHHHHHHHHHhhccccc
Q psy17091 329 MFNFISAIKL-----NNINSFMESINHVYDSSIIHL 359 (1250)
Q Consensus 329 ~iv~iSA~~g-----~gv~~l~~~i~~~~~~~~~~~ 359 (1250)
.++.+++..+ .++.+|++.+.+.+.+.....
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~ 219 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGC 219 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCC
Confidence 4666666543 689999999988887654433
No 194
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.72 E-value=9.1e-17 Score=168.94 Aligned_cols=159 Identities=17% Similarity=0.129 Sum_probs=111.7
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
.+.+||+++|.+|||||||+|+|++... ...+++|+.+.....+.+++. .+.+|||||+.+.. ..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 82 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-----------AI 82 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-----------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-----------HH
Confidence 3469999999999999999999997653 345666766666666777764 68899999985432 11
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|+++..+.... .++..+.. .++|+++|+||+|+.+..... .+++.+..... ..++++
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~-~~~~~~ 159 (187)
T 2a9k_A 83 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAEQW-NVNYVE 159 (187)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC--HHHHHHHHHHT-TCEEEE
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC--HHHHHHHHHHc-CCeEEE
Confidence 23456789999999999876433232 23333333 379999999999997543221 11122222222 258999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++++++.+.+..
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 160 TSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 195
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.72 E-value=3.5e-17 Score=173.57 Aligned_cols=150 Identities=18% Similarity=0.114 Sum_probs=107.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||.. ++......++
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 96 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE---------RFNSITSAYY 96 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSG---------GGHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH---------HHHHHHHHHh
Confidence 48999999999999999999987643 34456677777777778877 478999999975 2334456677
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHHhc-CCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFYEL-GIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~~~-~~~~~~~iSA~~g~g 150 (1250)
..+|++|+|+|++++.+..+ ..+...++. .+.|+++|+||+|+.+.... .++... ....++++||++|.|
T Consensus 97 ~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 97 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 89999999999987433322 223344443 36899999999999764433 223332 233679999999999
Q ss_pred hhHHHHHHHHhh
Q psy17091 151 IKNFLENILTIE 162 (1250)
Q Consensus 151 i~~L~~~i~~~l 162 (1250)
++++++.+.+.+
T Consensus 177 i~~l~~~l~~~i 188 (192)
T 2il1_A 177 VDEIFLKLVDDI 188 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 196
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.72 E-value=4.2e-17 Score=172.41 Aligned_cols=159 Identities=19% Similarity=0.113 Sum_probs=110.6
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+..+||+++|.+|||||||+|+|++...... ..+.++.+.....+..++ ..+.+|||||+.+....
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 87 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI----------- 87 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS-----------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC-cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh-----------
Confidence 4579999999999999999999998664322 223333333334444444 47889999998655321
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+..+. .++..+.+ .+.|+++|+||+|+.+.... .+..+.+.+.++ .++++
T Consensus 88 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~ 163 (189)
T 2gf9_A 88 TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG----FEFFE 163 (189)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----CEEEE
T ss_pred HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC----CeEEE
Confidence 13567899999999999886443332 34445544 37999999999999754322 223333444333 58999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++++++.+.+.+
T Consensus 164 ~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 164 ASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999877643
No 197
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=171.94 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=101.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.......+.+++|. ....+.+++. .+.+|||||+... +.......++
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~ 75 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLTVDGEDTTLVVVDTWEAEKL-------DKSWSQESCL 75 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEEETTEEEEEEEECCC--------------CHHHHHTT
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEEECCEEEEEEEEecCCCCcc-------chhhhHHhhc
Confidence 589999999999999999999987655555555544 3445566664 7889999997632 1222334567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHhc----CCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRKS----GQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~~----~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|.++..+... ..+...+... +.|+++|+||+|+.+.... ..+. ..+. +++++||++|.
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~g~ 154 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDC-KFIETSATLQH 154 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTS-EEEECBTTTTB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 88999999999986322211 2233444442 7899999999999765443 1222 3444 78999999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++.+.+.+.
T Consensus 155 gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 155 NVAELFEGVVRQLR 168 (175)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 198
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.72 E-value=1e-16 Score=171.69 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=112.6
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+.++|+|+|.+|||||||+|+|++.. ....+++|+.+.....+.+++. .+.+|||||+.+.. ...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~~ 79 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-----------AIR 79 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-----------HHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-----------HHH
Confidence 46999999999999999999999765 2445667776666666777765 68899999985442 112
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
..+++.+|++++|+|+++..+.... .++..+.. .++|+++|+||+|+.+.... .+....+.+... .++++
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~ 155 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN----VNYVE 155 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT----CEEEE
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhC----CeEEE
Confidence 3456789999999999986433332 23333433 37999999999999764322 112222222222 58999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++++++.+.+..
T Consensus 156 ~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 156 TSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp ECTTTCTTHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 199
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.72 E-value=2.8e-17 Score=177.16 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=115.3
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||+|+|++... ...+.+|+.+.....+.+++. .+.+|||||+.+.... .
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 74 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL-----------R 74 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH-----------H
Confidence 469999999999999999999997553 335556666666566666664 7888999999665321 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEeccccCCccch---------HHHHHHHHHHhccC
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQR---------KIIKNNIKKKLNFL 325 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~---------~~~~~~l~~~l~~~ 325 (1250)
..+++.+|++++|+|++++.+..+. .++..+... +.|+++|+||+|+.+.... .+..+.+.+.+
T Consensus 75 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~--- 151 (212)
T 2j0v_A 75 PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI--- 151 (212)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH---
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc---
Confidence 2467899999999999986544443 345555543 7999999999999764321 12222333333
Q ss_pred CCCeEEEeecCCCCChHHHHHHHHHHHhhcc
Q psy17091 326 SFAMFNFISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 326 ~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+..+++++||++|.|++++|+++.+.+....
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred CCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 3358999999999999999999988876543
No 200
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.72 E-value=2.7e-17 Score=174.29 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=109.9
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|+|++...... ..+.++.+.....+..++. .+.+|||||+.+....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 86 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI----------- 86 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh-----------
Confidence 4579999999999999999999998664333 3344455555556666664 7889999998543311
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|+++..+.++. .++..+.. .+.|+++|+||+|+.+.... .+..+.+.+.. ..++++
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 162 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH----GLIFME 162 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc----CCEEEE
Confidence 12456889999999999886443332 24444443 37999999999999753322 22223333333 258999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++++++.+.+.+
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 163 TSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp ECTTTCTTHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999776543
No 201
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.72 E-value=3.2e-17 Score=173.32 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=108.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
.+.+||+++|.+|||||||+|+|++..... ...+.++.+.....+.+++ ..+.+|||||+ +.+....
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 86 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQ----------ERFRKSM 86 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCS----------HHHHTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhh
Confidence 357999999999999999999999765433 2344555555556667766 47889999997 3332112
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv 331 (1250)
...+++.+|++++|+|+++..+..+. .++..+.+ .++|+++|+||+|+.+.... .+..+.+.+.. ..+++
T Consensus 87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~ 162 (189)
T 1z06_A 87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH----SMPLF 162 (189)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----TCCEE
T ss_pred hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHc----CCEEE
Confidence 33567899999999999886443332 23333333 47999999999999754322 22233333332 25899
Q ss_pred EeecCCC---CChHHHHHHHHHHHh
Q psy17091 332 FISAIKL---NNINSFMESINHVYD 353 (1250)
Q Consensus 332 ~iSA~~g---~gv~~l~~~i~~~~~ 353 (1250)
++||++| .|++++|+++.+.+.
T Consensus 163 ~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 163 ETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp ECCSSSGGGGSCHHHHHHHHC----
T ss_pred EEeCCcCCcccCHHHHHHHHHHHHh
Confidence 9999999 999999999876553
No 202
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=175.34 Aligned_cols=157 Identities=20% Similarity=0.131 Sum_probs=102.8
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcce-eccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV-ITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVI 256 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~ 256 (1250)
.+.+||+++|.+|||||||+|+|++.... ...+..|++. ....+.+++ ..+.+|||||+.+.. .
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~ 92 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDF--QMKTLIVDGERTVLQLWDTAGQERFR-----------S 92 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------C--EEEEEEETTEEEEEEEEECTTCTTCH-----------H
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcccee--EEEEEEECCEEEEEEEEECCCCcchh-----------h
Confidence 35799999999999999999999976532 2233334333 334455555 468899999985432 1
Q ss_pred HHHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCc------cc-hHHHHHHHHHHhccC
Q psy17091 257 KTLKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIH------NQ-RKIIKNNIKKKLNFL 325 (1250)
Q Consensus 257 ~~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~------~~-~~~~~~~l~~~l~~~ 325 (1250)
....+++.+|++++|+|++++.+.++.. ++..+.. .++|+++|+||+|+.+. .. ..+..+.+....
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~--- 169 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY--- 169 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH---
T ss_pred hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc---
Confidence 1235668899999999998865444332 3344433 37999999999999631 11 122223333333
Q ss_pred CCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 326 SFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 326 ~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
..+++++||++|.|++++++++.+.+.
T Consensus 170 -~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 170 -GALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred -CCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999987664
No 203
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=6.3e-17 Score=188.82 Aligned_cols=249 Identities=22% Similarity=0.199 Sum_probs=158.0
Q ss_pred CCCEEEEEeCCCCCCCccc---hhHHhc---CCCCcEecccccCCchhHHHHHHHHhhCCcc---cccccccccccccce
Q psy17091 111 GQPIVLVINKSENINSSIS---LDFYEL---GIGNPHIISALYGNGIKNFLENILTIELPYK---KFFKKKEFTNIHSIE 181 (1250)
Q Consensus 111 ~~p~ilv~NK~D~~~~~~~---~~~~~~---~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~---~~~~~~~~~~~~~~~ 181 (1250)
.+|.++++||+|+...... .++... +. ....+++..+.+...+.+.+.....+-. ...+...........
T Consensus 88 ~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 166 (357)
T 2e87_A 88 RDTFHKAMAGIDWAIRIIRELEERYVERIRYSN-DPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLE 166 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 4577789999998765443 222222 32 3344555555555554443221110000 000000000000124
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcch-hhHHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTF-EVIEKFSVIKTLK 260 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~e~~~~~~~~~ 260 (1250)
.++|+++|.+|||||||+|+|++.. ..+++.+++|.+.....+..++..+.+|||||+.+..... ...+. .....
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~---~~~~~ 242 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEK---QAILA 242 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHH---HHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHH---HHHHH
Confidence 6899999999999999999999976 4556789999998888888888899999999997643211 11221 11223
Q ss_pred hhccCcEEEEEecCCCCC--CHHH-HHHHHHHHH--cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNI--SAQD-INIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~--~~~d-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
....+|++++|+|++... +..+ ..++..+.. .++|+++|+||+|+.+.....+..+.+. . ...+++++||
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~----~-~~~~~~~iSA 317 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVK----E-KGLNPIKISA 317 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHH----H-TTCCCEECBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHH----h-cCCCeEEEeC
Confidence 334699999999988753 4433 455665554 2899999999999976544332222222 1 2368999999
Q ss_pred CCCCChHHHHHHHHHHHhhcccccChhHHHHHHH
Q psy17091 336 IKLNNINSFMESINHVYDSSIIHLSTSRITRALI 369 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~ 369 (1250)
++|.|++++++++.+.+.....++..+.++++++
T Consensus 318 ~~g~gi~~l~~~i~~~l~~~~~~~~~~~~~~~l~ 351 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRPLAEKVAREKIERELR 351 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence 9999999999999998876655555555555443
No 204
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.72 E-value=1.1e-16 Score=171.13 Aligned_cols=158 Identities=20% Similarity=0.153 Sum_probs=110.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||+|+|++...... ..+.++.+.....+..++ ..+.+|||||+.+ +. ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~-~~~ 74 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER----------YR-TIT 74 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC-CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GH-HHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hc-chH
Confidence 469999999999999999999998764322 223333333334455554 4788999999832 22 123
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.... .+..+.+.+.++ .+++++
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~ 150 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG----FEFFEA 150 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT----CEEEEC
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC----CeEEEE
Confidence 4677899999999999986443332 24444444 47999999999999764322 223333444333 589999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||++|.|++++++++.+.+..
T Consensus 151 Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 151 SAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp BTTTTBSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999877643
No 205
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=5.7e-17 Score=171.97 Aligned_cols=161 Identities=19% Similarity=0.135 Sum_probs=110.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
.+.++|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||+.+....
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 80 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL----------- 80 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence 35799999999999999999999976533 22333334444444555554 57888999998543211
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+..+. .++..+.. .++|+++|+||+|+.+.....+....+.+.. ..++++
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~ 156 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH----SMLFIE 156 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT----TCEEEE
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHc----CCEEEE
Confidence 23466889999999999886443332 23344443 3689999999999965332222222222222 368999
Q ss_pred eecCCCCChHHHHHHHHHHHhhcc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+||++|.|++++++++.+.+....
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 157 ASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred ecCCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999988776543
No 206
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.72 E-value=4.8e-17 Score=170.78 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=109.9
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeE--EEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~--~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
.+.+||+++|.+|||||||+|+|++.. ......+++.+.....+..++..+ .+|||||+.+....
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 82 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKI--FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM----------- 82 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHH-----------
Confidence 357999999999999999999999653 233444555555566677777654 45999998543211
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv 331 (1250)
...+++.+|++++|+|++++.+.+.. .++..+.+ .++|+++|+||+|+.+.... .+..+.+.+..+ .+++
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~----~~~~ 158 (183)
T 3kkq_A 83 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN----IPYI 158 (183)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT----CCEE
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC----CeEE
Confidence 12456789999999999986433322 23333322 57899999999999753322 222333333333 6899
Q ss_pred EeecC-CCCChHHHHHHHHHHHh
Q psy17091 332 FISAI-KLNNINSFMESINHVYD 353 (1250)
Q Consensus 332 ~iSA~-~g~gv~~l~~~i~~~~~ 353 (1250)
++||+ +|.|++++|+++.+.+.
T Consensus 159 ~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 159 ETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp EEBCSSSCBSHHHHHHHHHHHHH
T ss_pred EeccCCCCCCHHHHHHHHHHHHh
Confidence 99999 99999999999987764
No 207
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.72 E-value=4.1e-17 Score=171.38 Aligned_cols=148 Identities=19% Similarity=0.277 Sum_probs=105.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++.....+.+..+. ....+.+++..+.+|||||+.. +...+..++..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~~~ 83 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGF----NIKSVQSQGFKLNVWDIGGQRK---------IRPYWRSYFEN 83 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTE----EEEEEEETTEEEEEEECSSCGG---------GHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCe----EEEEEEECCEEEEEEECCCCHH---------HHHHHHHHhCC
Confidence 5899999999999999999998865444444443 3345667889999999999762 33445667889
Q ss_pred CCEEEEEEeCCCCCChhh--HHHHHHHHh---cCCCEEEEEeCCCCCCCccchh---HHhc-----CCCCcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSISLD---FYEL-----GIGNPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~---~~~~-----~~~~~~~iSA~~g~ 149 (1250)
+|++++|+|++++.+... ..+..+++. .+.|+++|+||+|+.+.....+ .... ...+++++||++|.
T Consensus 84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 999999999987432221 222233322 4689999999999976543311 1111 01147899999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++++.+.+.
T Consensus 164 gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 164 GVQDGMNWVCKNVN 177 (181)
T ss_dssp THHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988664
No 208
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=1e-16 Score=171.89 Aligned_cols=160 Identities=19% Similarity=0.122 Sum_probs=115.6
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+..++|+++|.+|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||+.+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 73 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI----------- 73 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH-----------
Confidence 34699999999999999999999986543 334566666666667777765 7889999998654321
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+.... .+..+.+.... ..++++
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 149 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN----KMPFLE 149 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT----TCCEEE
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc----CCeEEE
Confidence 124678999999999999865444432 3344433 36899999999999764322 22223333322 358999
Q ss_pred eecCCCCChHHHHHHHHHHHhhc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
+||++|.|++++++++.+.+...
T Consensus 150 ~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 150 TSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998887653
No 209
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.71 E-value=2.9e-17 Score=184.50 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=106.8
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccC-------CCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcch---hh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYD-------TPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTF---EV 249 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~-------~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~---~~ 249 (1250)
.++|+++|.+|+|||||+|+|++.+....+. .++++.+.....+..++. ++.+|||||+.+..... ..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 6899999999999999999999987766543 445555555555555554 88999999996543211 11
Q ss_pred HHHHHHHHHHHhhc-------------cCcEEEEEecCCC-CCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHH
Q psy17091 250 IEKFSVIKTLKSIL-------------EANVVILLLDAQQ-NISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIK 315 (1250)
Q Consensus 250 ~e~~~~~~~~~~~~-------------~ad~vllviD~~~-~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~ 315 (1250)
+-.|...+...++. ++|++++++|.+. ++++.+..+++.+.+ ++|+|+|+||+|+....+.....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~ 166 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 166 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHH
Confidence 21121112222222 3778888886654 889999999998887 89999999999998776666666
Q ss_pred HHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 316 NNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 316 ~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+.+.+.+... ..+++.+||+++.|++++++++.+.++
T Consensus 167 ~~i~~~l~~~-~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 167 KQIMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHT-TCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHc-CCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 6666655433 357888999999999999998877643
No 210
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.71 E-value=1.9e-17 Score=201.06 Aligned_cols=130 Identities=21% Similarity=0.289 Sum_probs=102.8
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCccee---------------c------cCCCCcceeeEEEEEEEcCeeEEEEecCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI---------------T------YDTPGTTRDSIKSLFEYNNKKYILIDTAG 239 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~---------------~------~~~~gtT~~~~~~~~~~~~~~~~liDTpG 239 (1250)
+..+|+|+|++|||||||+|+|++....+ + ...+|+|.......+.+++..++||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 36799999999999999999997211111 1 11368888888888999999999999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHH
Q psy17091 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIK 319 (1250)
Q Consensus 240 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~ 319 (1250)
+.++. ..+..+++.+|++|+|+|++++.+.++..++..+.+.++|+++|+||+|+.... ..+..++++
T Consensus 92 ~~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~-~~~~l~ei~ 159 (528)
T 3tr5_A 92 HADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP-SIELLDEIE 159 (528)
T ss_dssp STTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC-HHHHHHHHH
T ss_pred chhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc-HHHHHHHHH
Confidence 97764 234567899999999999999999999999999999999999999999996533 233344444
Q ss_pred HHh
Q psy17091 320 KKL 322 (1250)
Q Consensus 320 ~~l 322 (1250)
+.+
T Consensus 160 ~~l 162 (528)
T 3tr5_A 160 SIL 162 (528)
T ss_dssp HHH
T ss_pred Hhh
Confidence 433
No 211
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=9.1e-17 Score=166.36 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=105.6
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
.++|+++|.+|||||||+|+|++..... ...+ +........+..++ ..+.+|||||+.+.. ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~~ 69 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE-SYIP-TVEDTYRQVISCDKSICTLQITDTTGSHQFP-----------AMQR 69 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS-SCCC-CSCEEEEEEEEETTEEEEEEEEECCSCSSCH-----------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCC-CccccEEEEEEECCEEEEEEEEECCCchhhH-----------HHHH
Confidence 6899999999999999999999865321 1222 22222223334444 368899999985442 1122
Q ss_pred HhhccCcEEEEEecCCCCCCHHH-HHHHHHHHH-----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 260 KSILEANVVILLLDAQQNISAQD-INIANFIYE-----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d-~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
.+++.+|++++|+|++++.+..+ ..++..+.+ .++|+++|+||+|+.+.... ....+.+.... ..++++
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 145 (172)
T 2erx_A 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW----KCAFME 145 (172)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----TCEEEE
T ss_pred HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh----CCeEEE
Confidence 45678999999999987543332 234444444 37999999999999754332 12223333333 258999
Q ss_pred eecCCCCChHHHHHHHHHHHhhc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
+||++|.|++++++++.+.+..+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 146 TSAKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp CBTTTTBSHHHHHHHHHHTCCSS
T ss_pred ecCCCCcCHHHHHHHHHHHHhhh
Confidence 99999999999999998876543
No 212
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.71 E-value=9.4e-17 Score=167.56 Aligned_cols=158 Identities=16% Similarity=0.076 Sum_probs=107.4
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...++|+++|.+|||||||+|+|++...... ..+.++.+.....+..++ ..+.+|||||+.+.. ..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 80 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD-CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-----------AV 80 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSS-CTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-----------HH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-----------hh
Confidence 3579999999999999999999997654221 222223333334455555 478899999984332 11
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+.... .+..+++.+.. ..++++
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 156 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN----GLLFLE 156 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT----TCEEEE
T ss_pred HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc----CCEEEE
Confidence 235678899999999999874443332 3333433 57899999999999754322 11222222222 368999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q psy17091 333 ISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+||++|.|++++++++.+.+.
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 157 ASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999877653
No 213
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.71 E-value=5.1e-17 Score=181.25 Aligned_cols=160 Identities=15% Similarity=0.196 Sum_probs=123.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCC-cceeeeEEEEEECCEEEEEEecCCCCcch--hhHHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPG-LTRDRHYGEGYIGKKSFIIIDTGGFEPEV--KKGIMHEMTKQTKQA 79 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~-~T~~~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~ 79 (1250)
.+|+|+|++|||||||+|+|++.....++..++ +|+++....+.+++..+.||||||+.+.. ...+.+.+...+..+
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~ 102 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLS 102 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999988665666666 89999999999999999999999986432 123334556667778
Q ss_pred hhcCCEEEEEEeCCCCCChhhHHHHHHHHhc-----CCCEEEEEe-CCCCCCCccchh------------HH-hcC----
Q psy17091 80 IIESDIIIFIVDGRQGLVEQDKLITNFLRKS-----GQPIVLVIN-KSENINSSISLD------------FY-ELG---- 136 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~-----~~p~ilv~N-K~D~~~~~~~~~------------~~-~~~---- 136 (1250)
++.+|++|+|+|++. +...+..+.+++.+. +.|.++|+| |+|+.... ..+ .. ..+
T Consensus 103 ~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 180 (260)
T 2xtp_A 103 APGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRIC 180 (260)
T ss_dssp TTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEE
T ss_pred CCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEE
Confidence 899999999999985 677777777777764 567777777 99987432 111 22 112
Q ss_pred -CCCcEecccccCCchhHHHHHHHHhhCCc
Q psy17091 137 -IGNPHIISALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 137 -~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
+. .+++||++|.|++++++.+.+.+...
T Consensus 181 ~~~-~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 181 AFN-NRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp ECC-TTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Eec-CcccccccHHHHHHHHHHHHHHHHhC
Confidence 22 27899999999999999999877643
No 214
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.71 E-value=6.2e-17 Score=169.44 Aligned_cols=152 Identities=19% Similarity=0.110 Sum_probs=109.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||.... ......++
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 82 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFV-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY---------HSLAPMYY 82 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCT-TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG---------GGGTHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC-CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh---------hhhhHHHh
Confidence 48999999999999999999987643 33345555566566666665 48999999997532 23345567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.|
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 161 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGL-FFMETSAKTATN 161 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCSSSCTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCC-EEEEEECCCCCC
Confidence 89999999999986433211 233333443 26789999999999765433 2233 3344 689999999999
Q ss_pred hhHHHHHHHHhhCCc
Q psy17091 151 IKNFLENILTIELPY 165 (1250)
Q Consensus 151 i~~L~~~i~~~l~~~ 165 (1250)
++++++.+.+.+...
T Consensus 162 i~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 162 VKEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999877543
No 215
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=5.6e-17 Score=173.37 Aligned_cols=151 Identities=18% Similarity=0.105 Sum_probs=112.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||.. ++......++
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 96 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE---------RFRSITQSYY 96 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG---------GGHHHHGGGS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHHH
Confidence 48999999999999999999987643 445667777877777888774 78999999975 3344566778
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. .++++||++|.|
T Consensus 97 ~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~g~g 175 (201)
T 2ew1_A 97 RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM-YYLETSAKESDN 175 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-CEEECCTTTCTT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 99999999999987422211 223333333 36789999999999754333 2222 3344 789999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+..
T Consensus 176 v~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 176 VEKLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 216
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.71 E-value=5.6e-17 Score=188.93 Aligned_cols=149 Identities=14% Similarity=0.148 Sum_probs=124.6
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
+|+++|++|+|||||+|+|+ .+|+|.+.....+.+++..+.+|||||+.++. ......++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~-----------~~~~~~~~ 82 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL-----------KSLITALN 82 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH-----------HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH-----------HHHHHHHH
Confidence 89999999999999999998 46788888778888888999999999996542 22345668
Q ss_pred cCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcE-EEEEe-ccccCCccchHHHHHHHHHHhccCC--CCeEEE--eecCC
Q psy17091 264 EANVVILLLDAQQNISAQDINIANFIYESGRSL-IVCVN-KWDSIIHNQRKIIKNNIKKKLNFLS--FAMFNF--ISAIK 337 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~-iiv~N-K~Dl~~~~~~~~~~~~l~~~l~~~~--~~~iv~--iSA~~ 337 (1250)
.+|++++|+| +.+...+..+.+..+...++|. ++|+| |+|+ +....++..+++++.+.... ..|+++ +||++
T Consensus 83 ~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 83 ISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp TCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred HCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 9999999999 8999999999999888899998 99999 9999 65444555567777765443 479999 99999
Q ss_pred ---CCChHHHHHHHHHHHhh
Q psy17091 338 ---LNNINSFMESINHVYDS 354 (1250)
Q Consensus 338 ---g~gv~~l~~~i~~~~~~ 354 (1250)
|.|+++|++.+.+.++.
T Consensus 161 ~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 161 KNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp SSTTTTHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhhccc
Confidence 99999999999887654
No 217
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.71 E-value=6e-17 Score=173.75 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=112.4
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...++|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||+.+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 73 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL----------- 73 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh-----------
Confidence 34799999999999999999999986543 23455556666666666665 47889999998443211
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH-------cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCe
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE-------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAM 329 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 329 (1250)
...+++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+.....+..+.+.. .....+
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~ 150 (207)
T 1vg8_A 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIP 150 (207)
T ss_dssp CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCC
T ss_pred HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH---hcCCce
Confidence 124668899999999998864433332 2333322 47899999999999744322222222222 133568
Q ss_pred EEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 330 FNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 330 iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
++++||++|.|++++++++.+.+..
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 151 YFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 218
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.7e-17 Score=175.77 Aligned_cols=160 Identities=19% Similarity=0.118 Sum_probs=110.0
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCccee-ccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVI-TYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+..+||+++|.+|||||||+|+|++..... ..+..|++.......+...+..+.+|||||+ +.+.. ..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~-~~ 89 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ----------ERYRT-IT 89 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH----------HHCHH-HH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh----------HHHHH-HH
Confidence 457999999999999999999999755322 1233344444333333234567899999997 22322 23
Q ss_pred HHhhccCcEEEEEecCCCCCCHHH-HHHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 259 LKSILEANVVILLLDAQQNISAQD-INIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d-~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
..+++.+|++++|+|+++..+.+. ..++..+.. .+.|+++|+||+|+.+.... .+..+.+.+..+ .+++++
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~ 165 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG----FDFFEA 165 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----CEEEEC
T ss_pred HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC----CeEEEE
Confidence 456789999999999987544332 234444444 47999999999999754322 223333444333 589999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||++|.|++++|+++.+.+.+
T Consensus 166 Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 166 SAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 219
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.71 E-value=6.2e-18 Score=177.29 Aligned_cols=156 Identities=22% Similarity=0.206 Sum_probs=100.5
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+.+||+++|.+|||||||+|++++... ...+++|+.+.....+..++. .+.+|||||+.+.... .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL-----------R 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTT-----------G
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh-----------H
Confidence 469999999999999999999997542 234455554443333334444 4569999998654311 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH--HHHHHHHc--CCcEEEEEeccccCCccch-----------HHHHHHHHHHhc
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN--IANFIYES--GRSLIVCVNKWDSIIHNQR-----------KIIKNNIKKKLN 323 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~--~~~~~~~~--~~p~iiv~NK~Dl~~~~~~-----------~~~~~~l~~~l~ 323 (1250)
..+++.+|++++|+|++++.+.++.. ++..+... +.|+++|+||+|+.+.... .+..+.+.+.+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 152 (182)
T 3bwd_D 74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI- 152 (182)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH-
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc-
Confidence 24668899999999998865544432 44555542 7999999999999754321 11222333333
Q ss_pred cCCCCeEEEeecCCCCChHHHHHHHHHHH
Q psy17091 324 FLSFAMFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 324 ~~~~~~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
+..+++++||++|.|++++++++.+.+
T Consensus 153 --~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 153 --GAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp --TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 335899999999999999999997764
No 220
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=2.7e-17 Score=177.28 Aligned_cols=151 Identities=20% Similarity=0.149 Sum_probs=112.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
++|+++|.+|||||||+|+|++.+.. ....++++.+.....+.+++ ..+.||||||+... ...+..++
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 90 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF---------RTITTAYY 90 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG---------TCCCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH---------HHHHHHHh
Confidence 58999999999999999999987643 45667788888888888888 57999999997532 22345567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCch
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi 151 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..++ +++++||++|.|+
T Consensus 91 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 169 (213)
T 3cph_A 91 RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNV 169 (213)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTC-CEEECBTTTTBSS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCC-EEEEEeCCCCCCH
Confidence 89999999999986432211 223333333 26899999999999433222 2222 3455 7899999999999
Q ss_pred hHHHHHHHHhhCC
Q psy17091 152 KNFLENILTIELP 164 (1250)
Q Consensus 152 ~~L~~~i~~~l~~ 164 (1250)
+++++.+.+.+.+
T Consensus 170 ~~l~~~l~~~~~~ 182 (213)
T 3cph_A 170 NEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 221
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.71 E-value=2.3e-17 Score=172.72 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=105.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc---CeeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN---NKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
..++|+++|.+|||||||+|+|++.... ....+.++.+.....+.++ ...+.+|||||+.+.. ..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 74 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-----------SL 74 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-----------hh
Confidence 4799999999999999999999986533 2234555566656666665 2478999999974321 11
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH-------cCCcEEEEEeccccCCccc--hHHHHHHHHHHhccCCC
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE-------SGRSLIVCVNKWDSIIHNQ--RKIIKNNIKKKLNFLSF 327 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~-------~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~l~~~~~ 327 (1250)
...+++.+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.+... ..+..+.+.+ ....
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~ 151 (182)
T 1ky3_A 75 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGD 151 (182)
T ss_dssp --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTS
T ss_pred hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH---hcCC
Confidence 23567899999999999986443332 23333332 5789999999999964321 1222222322 1335
Q ss_pred CeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 328 AMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 328 ~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
.+++++||++|.|++++++++.+.+..
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 152 IPLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999877643
No 222
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.71 E-value=4.5e-17 Score=174.09 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=109.3
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|+|.+..... ...|.++.+. ...+.+++. .+.+|||||+.+....
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 89 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRL----------- 89 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGGGTTT-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceE-EEEEEECCEEEEEEEEECCCchhHHHH-----------
Confidence 347999999999999999999999765432 2233333333 344566664 7788999998433211
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEeccccCCccchHHH----------HHHHHHHhc
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRKII----------KNNIKKKLN 323 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~----------~~~l~~~l~ 323 (1250)
...+++.+|++++|+|+++..+.++. .++..+.+. +.|+++|+||+|+.+.....+. .++......
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 169 (201)
T 2gco_A 90 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMAN 169 (201)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHH
Confidence 12467899999999999886444443 355555554 8999999999999864321110 112222222
Q ss_pred cCCCCeEEEeecCCCCChHHHHHHHHHHH
Q psy17091 324 FLSFAMFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 324 ~~~~~~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
..+..+++++||++|.|++++++++.+.+
T Consensus 170 ~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 170 RISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33445899999999999999999997764
No 223
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.71 E-value=7.8e-17 Score=169.58 Aligned_cols=151 Identities=17% Similarity=0.080 Sum_probs=112.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||.. .+...+..++
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 80 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE---------RFRSVTRSYY 80 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG---------GGHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH---------HHHHHHHHHH
Confidence 58999999999999999999987644 34556677777777777777 588999999975 2334566778
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|
T Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 159 (186)
T 2bme_A 81 RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL-MFLETSALTGEN 159 (186)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEecCCCCCC
Confidence 99999999999987332221 123332332 46899999999999654332 2222 3343 789999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+..
T Consensus 160 i~~l~~~l~~~~~~ 173 (186)
T 2bme_A 160 VEEAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 224
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=188.44 Aligned_cols=159 Identities=15% Similarity=0.126 Sum_probs=113.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.+||+|+|.+|||||||+|+|++..... ..| |.+.....+..++..+.+|||||+.+.... ...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------~~~ 228 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH 228 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC-----CCS-----------HHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCC--ccc--ccceEEEEEecCcEEEEEEECCCCHhHHHH-----------HHH
Confidence 46899999999999999999999876432 333 555555677888899999999998544311 234
Q ss_pred hhccCcEEEEEecCCCCCCHHHHH-HHHHHH-H---cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 261 SILEANVVILLLDAQQNISAQDIN-IANFIY-E---SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~-~~~~~~-~---~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+++.+|++|+|+|+++..+..... .+..+. . .++|+++|+||+|+.+.....++.+.+..........+++++||
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSA 308 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA 308 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBT
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEEC
Confidence 568899999999998876654432 233332 2 27999999999999876555555554443333334568999999
Q ss_pred CCCCChHHHHHHHHHHHhh
Q psy17091 336 IKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~ 354 (1250)
++|.|++++|++|.+.+.+
T Consensus 309 k~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 309 TSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTTBTHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 225
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=172.48 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=108.4
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc--CeeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+|+|.+|||||||+|+|++...... ..+.++.+.....+..+ +..+.+|||||+.+....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 90 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI----------- 90 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh-----------
Confidence 4579999999999999999999998665433 22222333333444444 357889999999654311
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+.... .+..+.+.... ..++++
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 166 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN----GLLFLE 166 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT----TCEEEE
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc----CCEEEE
Confidence 12456889999999999886443322 33444443 37899999999999754321 12222222222 368999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++++++.+.+..
T Consensus 167 ~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 167 TSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp ECTTTCTTHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999776543
No 226
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.71 E-value=2.2e-17 Score=172.36 Aligned_cols=152 Identities=19% Similarity=0.175 Sum_probs=111.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC---EEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK---KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
.+|+++|.+|||||||+|+|++.... ....|+++.+.....+.+++ ..+.+|||||..... .....+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------~~~~~~ 76 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG---------KMLDKY 76 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC---------TTHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc---------chhhHH
Confidence 48999999999999999999987643 33345566777777788876 689999999976332 234456
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCC-EEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccc
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK-----SGQP-IVLVINKSENINSSIS-----LDFY-ELGIGNPHIISAL 146 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~-----~~~p-~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~ 146 (1250)
++.+|++++|+|++++.+... ..+...+.. .+.| +++|+||+|+.+.... .++. ..+. +++++||+
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGF-SSHFVSAK 155 (178)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEEECTT
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCC-cEEEEeCC
Confidence 789999999999987433222 223333433 2566 7899999999754332 2232 3454 78999999
Q ss_pred cCCchhHHHHHHHHhhCCc
Q psy17091 147 YGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 147 ~g~gi~~L~~~i~~~l~~~ 165 (1250)
+|.|++++++.+.+.+...
T Consensus 156 ~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 156 TGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TCTTHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999877643
No 227
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=6.6e-17 Score=172.69 Aligned_cols=158 Identities=17% Similarity=0.119 Sum_probs=105.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+..+||+++|.+|||||||+|+|++..... ...+.++.+.....+.+++ ..+.+|||||+.+ +.. .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~-~ 90 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER----------FRS-V 90 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHH----------HSC-C
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh----------HHH-H
Confidence 457999999999999999999999865433 2455556666666677776 5788999999732 211 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+.++. .++..+.. .+.|+++|+||+|+.+..... .....+.+.. ..++++
T Consensus 91 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 166 (200)
T 2o52_A 91 TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN----ELMFLE 166 (200)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT----TCEEEE
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCEEEE
Confidence 23467889999999999986443332 23333333 379999999999997543221 1122222222 368999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q psy17091 333 ISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+||++|.|++++++++.+.+.
T Consensus 167 ~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 167 TSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp ECTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999977654
No 228
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=4.9e-17 Score=174.69 Aligned_cols=162 Identities=15% Similarity=0.107 Sum_probs=108.7
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|+|++..... .+.+|+.+.....+..++. .+.+|||||+.+....
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 89 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL----------- 89 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT-----------
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH-----------
Confidence 347899999999999999999999865432 2334444444445666664 6788999998654311
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEeccccCCccchHHHH----------HHHHHHhc
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRKIIK----------NNIKKKLN 323 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~----------~~l~~~l~ 323 (1250)
...+++.+|++++|+|+++..+..+. .++..+.+. ++|+++|+||+|+.+.....+.. ++......
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 169 (207)
T 2fv8_A 90 RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV 169 (207)
T ss_dssp GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH
Confidence 12466889999999999886443333 355555554 89999999999997643221111 11112222
Q ss_pred cCCCCeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 324 FLSFAMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 324 ~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
..+..+++++||++|.|++++++++.+.+..
T Consensus 170 ~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 170 RIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred hcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 2333489999999999999999999877643
No 229
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.71 E-value=5.6e-17 Score=171.39 Aligned_cols=149 Identities=19% Similarity=0.174 Sum_probs=105.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++.... ....| |.......+...+..+.+|||||+. ++...+..++..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~ 90 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFN-EDMIP--TVGFNMRKITKGNVTIKLWDIGGQP---------RFRSMWERYCRG 90 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-CSCCC--CCSEEEEEEEETTEEEEEEEECCSH---------HHHTTHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCC-CccCC--CCceeEEEEEeCCEEEEEEECCCCH---------hHHHHHHHHHcc
Confidence 48999999999999999999987643 22233 3333344567788999999999965 344456667899
Q ss_pred CCEEEEEEeCCCCCChhh--HHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHhc-----CCCCcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYEL-----GIGNPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~~-----~~~~~~~iSA~~g~ 149 (1250)
+|++++|+|+++..+... ..+..+++. .+.|+++|+||+|+...... .+.... ....++++||++|.
T Consensus 91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 170 (188)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence 999999999987422221 223333332 57899999999999765322 111111 11256899999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++++.+.+.
T Consensus 171 gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 171 NIDITLQWLIQHSK 184 (188)
T ss_dssp THHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988664
No 230
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=7.5e-17 Score=166.65 Aligned_cols=150 Identities=21% Similarity=0.143 Sum_probs=107.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....|.++.+.....+.+++. .+.+|||||.... ......++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~ 73 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF---------ASLAPXYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG---------GGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh---------hhhhhhhh
Confidence 48999999999999999999987643 334455566666666667654 8899999997532 23355667
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCc---cc-----hhHH-hcCCCCcEeccccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSS---IS-----LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~---~~-----~~~~-~~~~~~~~~iSA~~ 147 (1250)
+.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.... .. .++. ..+. +++++||++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 89999999999987422222 122333332 368999999999997542 22 2222 3344 789999999
Q ss_pred CCchhHHHHHHHHhhC
Q psy17091 148 GNGIKNFLENILTIEL 163 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~ 163 (1250)
|.|++++++.+.+.+.
T Consensus 153 ~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIP 168 (170)
T ss_dssp CTTHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987654
No 231
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.71 E-value=3.1e-17 Score=169.90 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=107.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++.... ...| |.......+.+++..+.+|||||+... ...+..++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~---------~~~~~~~~~~ 74 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSI---------RPYWRCYYSN 74 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEEETTEEEEEEEECCCGGG---------GGGGGGGCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CcCC--cCccceEEEEECCEEEEEEECCCChhh---------hHHHHHHhcc
Confidence 58999999999999999999987642 2333 445556677788999999999998632 2334556789
Q ss_pred CCEEEEEEeCCCCCChh--hHHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHH------hcCCCCcEecccccC
Q psy17091 83 SDIIIFIVDGRQGLVEQ--DKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFY------ELGIGNPHIISALYG 148 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~--~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~------~~~~~~~~~iSA~~g 148 (1250)
+|++++|+|++++.+.. ...+..++.. .+.|+++|+||+|+.+.... .+.. ..+. +++++||++|
T Consensus 75 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 153 (171)
T 1upt_A 75 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW-QIFKTSATKG 153 (171)
T ss_dssp CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE-EEEECCTTTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce-EEEECcCCCC
Confidence 99999999998753322 2333344433 47899999999999765332 1111 1122 5789999999
Q ss_pred CchhHHHHHHHHhhC
Q psy17091 149 NGIKNFLENILTIEL 163 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~ 163 (1250)
.|++++++.+.+.+.
T Consensus 154 ~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 154 TGLDEAMEWLVETLK 168 (171)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999988764
No 232
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.71 E-value=1.1e-16 Score=173.21 Aligned_cols=156 Identities=20% Similarity=0.169 Sum_probs=108.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc------------CeeEEEEecCCCCCCCcch
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN------------NKKYILIDTAGIRRRNKTF 247 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~ 247 (1250)
+..+||+++|.+|||||||+|+|++.... ....+.++.+.....+.++ ...+.+|||||+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------- 94 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ------- 94 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc-------
Confidence 45799999999999999999999986542 2223333444444455554 357899999997
Q ss_pred hhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHH-------cCCcEEEEEeccccCCccch-HHHHHHHH
Q psy17091 248 EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYE-------SGRSLIVCVNKWDSIIHNQR-KIIKNNIK 319 (1250)
Q Consensus 248 ~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~ 319 (1250)
+.+.. ....+++.+|++++|+|+++..+.++ +..++.. .++|+++|+||+|+.+.... .+..+++.
T Consensus 95 ---~~~~~-~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~ 168 (217)
T 2f7s_A 95 ---ERFRS-LTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA 168 (217)
T ss_dssp ---HHHHH-HHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred ---HhHHh-HHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH
Confidence 33332 23467789999999999988633333 2233332 46899999999999754322 22233333
Q ss_pred HHhccCCCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 320 KKLNFLSFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 320 ~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+.. ..+++++||++|.|++++++++.+.+.
T Consensus 169 ~~~----~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 169 DKY----GIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHT----TCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHC----CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 333 258999999999999999999987754
No 233
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.71 E-value=1.1e-16 Score=165.35 Aligned_cols=151 Identities=19% Similarity=0.076 Sum_probs=104.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||+... ......++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~ 76 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFH-EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY---------HSLAPMYY 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG---------GGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh---------hhhhHHhc
Confidence 48999999999999999999987643 22233344444444455554 58999999997632 23345667
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.|
T Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 155 (170)
T 1r2q_A 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL-LFMETSAKTSMN 155 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 89999999999987422211 223333332 36789999999998654332 2233 2333 679999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+.+
T Consensus 156 i~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 156 VNEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
No 234
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.71 E-value=7.6e-17 Score=172.41 Aligned_cols=152 Identities=20% Similarity=0.077 Sum_probs=107.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.||||||.. ++......++
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 99 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE---------RFRTITQSYY 99 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCG---------GGHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH---------hHHHHHHHHH
Confidence 48999999999999999999987643 23445555677677777877 489999999975 2334566778
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+...++++||++|.|
T Consensus 100 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 100 RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN 179 (201)
T ss_dssp TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 99999999999986322211 223333333 46899999999999764332 2333 34544789999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+..
T Consensus 180 i~~l~~~l~~~i~~ 193 (201)
T 2hup_A 180 VEEAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 235
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.71 E-value=7.4e-17 Score=171.60 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=110.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....|++|.+.....+.+++. .+.+|||||+.... . .....++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~--~~~~~~~ 94 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG------G--WLRDHCL 94 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG------H--HHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch------h--hhHHHhh
Confidence 58999999999999999999875543 345677888877777788775 67889999986322 1 1223456
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++|+|+|.++..+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. .++++||++|.
T Consensus 95 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sa~~~~ 173 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETSAALHH 173 (195)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEEEBTTTTB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCC-EEEEEcCCCCC
Confidence 78999999999986322111 223333332 37899999999999764433 2232 3344 78999999999
Q ss_pred chhHHHHHHHHhhCC
Q psy17091 150 GIKNFLENILTIELP 164 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~ 164 (1250)
|++++++.+.+.+..
T Consensus 174 ~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 174 NTRELFEGAVRQIRL 188 (195)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987753
No 236
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.71 E-value=9.6e-17 Score=169.21 Aligned_cols=151 Identities=22% Similarity=0.234 Sum_probs=109.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEE--EEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.. .....++++.+.....+.+++.. +.+|||||... +......++
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~ 73 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE---------YSAMRDQYM 73 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC------------CTTHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH---------HHHHHHHHH
Confidence 489999999999999999999876 35566777777777777787764 77899999763 223445567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 152 (189)
T 4dsu_A 74 RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGI-PFIETSAKTRQG 152 (189)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTC-CEEECCTTTCTT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 88999999999987322111 122233322 46899999999999754433 2222 3444 789999999999
Q ss_pred hhHHHHHHHHhhCCc
Q psy17091 151 IKNFLENILTIELPY 165 (1250)
Q Consensus 151 i~~L~~~i~~~l~~~ 165 (1250)
++++++.+.+.+...
T Consensus 153 i~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 153 VDDAFYTLVREIRKH 167 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999877544
No 237
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.71 E-value=4.5e-17 Score=169.99 Aligned_cols=150 Identities=20% Similarity=0.150 Sum_probs=110.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||.... ......++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~---------~~~~~~~~ 84 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYI 84 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG---------GGGSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH---------HHHHHHHh
Confidence 48999999999999999999987643 445677788888888888774 7999999997532 23344567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... ..+. ..+. +++++||++|.|
T Consensus 85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 163 (179)
T 2y8e_A 85 RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN 163 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEEEBTTTTBS
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 89999999999986322111 122222222 47899999999998754433 2222 3444 789999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 164 i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 164 VKQLFRRVAAALP 176 (179)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988664
No 238
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.71 E-value=9.4e-17 Score=167.54 Aligned_cols=150 Identities=17% Similarity=0.087 Sum_probs=106.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....+.++.+.....+..++ ..+.+|||||... +...+..++
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 85 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER---------FRAVTRSYY 85 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG---------TCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChH---------hhhhHHHHh
Confidence 58999999999999999999987642 22233334444455556665 4789999999653 233456678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.|
T Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 164 (179)
T 1z0f_A 86 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-LFLEASAKTGEN 164 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999987432222 223333333 46899999999999754332 2333 3344 789999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 165 i~~l~~~l~~~i~ 177 (179)
T 1z0f_A 165 VEDAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 239
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=4.5e-17 Score=172.75 Aligned_cols=153 Identities=17% Similarity=0.094 Sum_probs=105.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCc-ccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDA-LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~-~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.+|+++|.+|||||||+|+|++.... ...+.+++|.......+...+..+.+|||||.... ......++.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~ 94 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF---------HSLAPMYYR 94 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG---------GGGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh---------HhhhHHhhc
Confidence 48999999999999999999987632 34444455444433322223468999999997532 233455678
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCch
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~gi 151 (1250)
.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.|+
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA-IVVETSAKNAINI 173 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTC-EEEECBTTTTBSH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCCCCcCH
Confidence 9999999999987432221 223333333 26899999999999753332 2233 2343 6899999999999
Q ss_pred hHHHHHHHHhhCCc
Q psy17091 152 KNFLENILTIELPY 165 (1250)
Q Consensus 152 ~~L~~~i~~~l~~~ 165 (1250)
+++++.+.+.+.+.
T Consensus 174 ~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 174 EELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999877543
No 240
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.71 E-value=9.9e-17 Score=165.86 Aligned_cols=150 Identities=19% Similarity=0.127 Sum_probs=98.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++.|.+.....+.+++. .+.+|||||+.... . .....++
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~--~~~~~~~ 73 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGD-HAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG------G--WLQDHCL 73 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC----------------CHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCc-ccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccc------h--hhhhhhh
Confidence 58999999999999999999977654 233445567777777777774 67899999986321 0 1233356
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|.+++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETSAALHH 152 (169)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTTTB
T ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC-cEEEecCccCC
Confidence 78999999999987322111 122222222 27899999999999754433 2232 3344 78999999999
Q ss_pred chhHHHHHHHHhh
Q psy17091 150 GIKNFLENILTIE 162 (1250)
Q Consensus 150 gi~~L~~~i~~~l 162 (1250)
|++++++.+.+.+
T Consensus 153 ~v~~l~~~l~~~i 165 (169)
T 3q85_A 153 NTRELFEGAVRQI 165 (169)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 241
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=173.51 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=110.1
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc--CeeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
.+.+||+++|.+|||||||+|+|++.... ..+++|+.+.....+..+ +..+.+|||||+.+....
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 88 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL----------- 88 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-----------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH-----------
Confidence 35799999999999999999999986643 334445444444444443 457789999998655422
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFN 331 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv 331 (1250)
...+++.+|++++|+|+++..+.+... ++..+.+ .++|+++|+||+|+.+.... ....+.+..... .+++
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~----~~~~ 164 (201)
T 3oes_A 89 PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWG----ATFM 164 (201)
T ss_dssp CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT----CEEE
T ss_pred HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhC----CeEE
Confidence 124678899999999999764333322 3333332 37899999999999754332 222333333333 5899
Q ss_pred EeecCCCCChHHHHHHHHHHHhhcc
Q psy17091 332 FISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 332 ~iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
++||++|.|++++|+++.+.+....
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999988776543
No 242
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.70 E-value=2.7e-17 Score=176.37 Aligned_cols=160 Identities=19% Similarity=0.155 Sum_probs=80.8
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcc-eeeEEEEEEEcC----eeEEEEecCCCCCCCcchhhHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTT-RDSIKSLFEYNN----KKYILIDTAGIRRRNKTFEVIEKFS 254 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT-~~~~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~e~~~ 254 (1250)
...++|+++|.+|||||||+|+|++......+.+.+|+ .+.....+.+++ ..+.+|||||+ +.+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~ 87 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS----------DLYK 87 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT----------HHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc----------HHHH
Confidence 35799999999999999999999987434444555554 366666777775 47899999999 3333
Q ss_pred HHHHHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH------cCCcEEEEEeccccCC-ccch-HHHHHHHHHHhccC
Q psy17091 255 VIKTLKSILEANVVILLLDAQQNISAQDI-NIANFIYE------SGRSLIVCVNKWDSII-HNQR-KIIKNNIKKKLNFL 325 (1250)
Q Consensus 255 ~~~~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~------~~~p~iiv~NK~Dl~~-~~~~-~~~~~~l~~~l~~~ 325 (1250)
. ....+++.+|++++|+|++++.+..+. .++..+.. .++|+++|+||+|+.+ .... .+..+.+.+.++
T Consensus 88 ~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-- 164 (208)
T 2yc2_C 88 E-QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT-- 164 (208)
T ss_dssp H-HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT--
T ss_pred H-HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC--
Confidence 2 234677899999999999987543332 34444544 4789999999999976 3222 122223333322
Q ss_pred CCCeEEEeecCC-CCChHHHHHHHHHHHhh
Q psy17091 326 SFAMFNFISAIK-LNNINSFMESINHVYDS 354 (1250)
Q Consensus 326 ~~~~iv~iSA~~-g~gv~~l~~~i~~~~~~ 354 (1250)
.+++++||++ |.|++++++++.+.+..
T Consensus 165 --~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 165 --LDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp --CEEEECCC-------CHHHHHHHHHHHH
T ss_pred --CEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 6899999999 99999999999887643
No 243
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.70 E-value=5.8e-17 Score=167.74 Aligned_cols=150 Identities=21% Similarity=0.150 Sum_probs=105.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||.. ++......++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 76 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE---------RFHALGPIYY 76 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CCSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcH---------hhhhhHHHHh
Confidence 58999999999999999999987643 34556666666666666665 478899999975 2334445567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.|
T Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 155 (170)
T 1z08_A 77 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA-KHYHTSAKQNKG 155 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEEBTTTTBS
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEecCCCCCC
Confidence 89999999999987422211 123333332 46899999999999764332 2233 3343 789999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 156 i~~l~~~l~~~~~ 168 (170)
T 1z08_A 156 IEELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 244
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.70 E-value=5.8e-17 Score=167.59 Aligned_cols=150 Identities=18% Similarity=0.097 Sum_probs=105.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....+....+.....+.+.+ ..+.+|||||+... ......++
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~---------~~~~~~~~ 76 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFD-PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF---------RALAPMYY 76 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG---------GGGTHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh---------hcccHhhC
Confidence 48999999999999999999988632 22223333333344455554 58899999998532 23345567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.|
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 155 (170)
T 1z0j_A 77 RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA-IFVETSAKNAIN 155 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTTTBS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC-EEEEEeCCCCcC
Confidence 89999999999987433222 234444443 35689999999999764433 2222 3343 789999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 156 i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 156 INELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988664
No 245
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.70 E-value=2.8e-17 Score=174.98 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=105.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEE---cCeeEEEEecCCCCCCCcchhhHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY---NNKKYILIDTAGIRRRNKTFEVIEKFSVI 256 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~e~~~~~ 256 (1250)
.+.+||+++|.+|||||||+|++.+..... +..+++.........+ ....+.+|||||+.+..... +.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~----- 88 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT--FD----- 88 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT--CC-----
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh--hh-----
Confidence 457999999999999999999998853322 2222222222222222 33689999999996643111 00
Q ss_pred HHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHH-----cCCcEEEEEeccccCCccch----HHHHHHHHHHhcc---
Q psy17091 257 KTLKSILEANVVILLLDAQQNISAQDINIANFIYE-----SGRSLIVCVNKWDSIIHNQR----KIIKNNIKKKLNF--- 324 (1250)
Q Consensus 257 ~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~----~~~~~~l~~~l~~--- 324 (1250)
...+++.+|++++|+|+++...+....+..++.+ .+.|+++|+||+|+.+.... ........+.+..
T Consensus 89 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 89 -YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp -HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 0245678999999999998744444555555554 37999999999999864321 1222222222221
Q ss_pred -CCCCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 325 -LSFAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 325 -~~~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
....+++++||++ .|++++|+.+.+.
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 2346899999999 9999999998764
No 246
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.70 E-value=8.7e-17 Score=168.13 Aligned_cols=150 Identities=21% Similarity=0.174 Sum_probs=108.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
++|+++|.+|||||||+|+|++.. ....+++++.+.....+.+++. .+.+|||||..... .....++
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------~~~~~~~ 78 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG---------AMREQYM 78 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS---------CCHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhH---------HHHHHHH
Confidence 589999999999999999999875 3456666776666666777774 78899999976332 2234456
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHH-HHHH---hcCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLIT-NFLR---KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~-~~l~---~~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|.++..+... ..+. .+++ ..+.|+++|+||+|+.+.... ..+. ..+. .++++||++|.
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 157 (181)
T 2fn4_A 79 RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV-AYFEASAKLRL 157 (181)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECBTTTTB
T ss_pred hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEecCCCCC
Confidence 78999999999987322111 1122 2222 247899999999999764433 2222 3343 78999999999
Q ss_pred chhHHHHHHHHhhCC
Q psy17091 150 GIKNFLENILTIELP 164 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~ 164 (1250)
|++++++.+.+.+..
T Consensus 158 gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 158 NVDEAFEQLVRAVRK 172 (181)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887643
No 247
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.1e-16 Score=174.02 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=109.3
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+..++|+|+|.+|||||||+|+|++...... ..+.++.+.....+.+++ ..+.+|||||+.+....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 78 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-SKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI----------- 78 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC-----------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh-----------
Confidence 3469999999999999999999998764433 345555555556677777 47889999998654321
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|++++.+.++. .++..+.. .++|+++|+||+|+.+.... .+..+.+.+.. ..++++
T Consensus 79 ~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 154 (223)
T 3cpj_B 79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN----QLLFTE 154 (223)
T ss_dssp CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT----TCEEEE
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc----CCEEEE
Confidence 12466889999999999987554443 23444443 37899999999999753322 12222222222 368999
Q ss_pred eecCCCCChHHHHHHHHHHHhhcc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+||++|.|++++++++.+.+....
T Consensus 155 ~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 155 TSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp CCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999988776543
No 248
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.70 E-value=6.4e-17 Score=172.27 Aligned_cols=151 Identities=18% Similarity=0.187 Sum_probs=106.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
++|+++|.+|||||||+|+|++.....+...| |.......+...+..+.+|||||+... ......+++.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~~ 86 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKF---------RGLWETYYDN 86 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGG---------GGGGGGGCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhH---------HHHHHHHHhc
Confidence 58999999999999999999988755333233 333455566788899999999998632 2334466889
Q ss_pred CCEEEEEEeCCCCCChhh--HHHHHHHHh----------cCCCEEEEEeCCCCCCCccc---hhHH------hcCCCCcE
Q psy17091 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK----------SGQPIVLVINKSENINSSIS---LDFY------ELGIGNPH 141 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~--~~~~~~l~~----------~~~p~ilv~NK~D~~~~~~~---~~~~------~~~~~~~~ 141 (1250)
+|++|+|+|++++.+... ..+..++.. .+.|+++|+||+|+...... .+.+ ......++
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIF 166 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEE
Confidence 999999999987533222 223333222 17899999999999876432 1111 11112578
Q ss_pred ecccccCCchhHHHHHHHHhhCC
Q psy17091 142 IISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 142 ~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
++||++|.|++++++.+.+.+..
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHHH
T ss_pred EeeCCCccCHHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 249
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=7.4e-17 Score=170.52 Aligned_cols=150 Identities=16% Similarity=0.117 Sum_probs=107.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHH-HHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMT-KQTKQA 79 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~-~~~~~~ 79 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||.. ++. .....+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 90 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFP-DRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE---------RFRKSMVQHY 90 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC-SSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH---------HHHTTTHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCch---------hhhhhhhHHH
Confidence 48999999999999999999987643 33456666677777777777 489999999964 333 445667
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccC
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g 148 (1250)
++.+|++|+|+|+++..+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. .++++||++|
T Consensus 91 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 169 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PLFETSAKNP 169 (189)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CEEECCSSSG
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-EEEEEeCCcC
Confidence 889999999999986322211 223232322 46899999999999764333 2232 3444 7899999999
Q ss_pred ---CchhHHHHHHHHhhC
Q psy17091 149 ---NGIKNFLENILTIEL 163 (1250)
Q Consensus 149 ---~gi~~L~~~i~~~l~ 163 (1250)
.|++++++.+.+.+.
T Consensus 170 ~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 170 NDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GGGSCHHHHHHHHC----
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 999999999876553
No 250
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.1e-16 Score=170.45 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=109.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..++|+++|.+|||||||+|+|++..... .+..+........+..++ ..+.+|||||+.+.. . ..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~-~~ 73 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP----------A-MQ 73 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH----------H-HH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCChHHhH----------H-HH
Confidence 46999999999999999999999755322 122222222223344444 368899999985432 1 12
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH-----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
..+++.+|++++|+|+++..+..+. .++..+.+ .+.|+++|+||+|+.+.....+....+...+. .++++
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~ 149 (199)
T 2gf0_A 74 RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK----CAFME 149 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT----CEEEE
T ss_pred HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC----CeEEE
Confidence 2456789999999999875433222 23333333 36899999999999764332233333333333 58999
Q ss_pred eecCCCCChHHHHHHHHHHHhhccccc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSSIIHL 359 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~~~~~ 359 (1250)
+||++|.|++++++++.+.+..+..++
T Consensus 150 ~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (199)
T 2gf0_A 150 TSAKMNYNVKELFQELLTLETRRNMSL 176 (199)
T ss_dssp CBTTTTBSHHHHHHHHHHHCSSSCEEC
T ss_pred EecCCCCCHHHHHHHHHHHHhhhhccc
Confidence 999999999999999999877665443
No 251
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.70 E-value=1.6e-16 Score=163.64 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=105.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ....++++.+.....+.+++. .+.+|||||... +......++
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~ 73 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED---------YAAIRDNYF 73 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------CHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcch---------hHHHHHHHh
Confidence 5899999999999999999998763 345555565555556667764 789999999752 334455667
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (168)
T 1u8z_A 74 RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVETSAKTRA 152 (168)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEECCTTTCT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCC-eEEEeCCCCCC
Confidence 89999999999986322111 122222222 37899999999998764333 2222 3454 78999999999
Q ss_pred chhHHHHHHHHhh
Q psy17091 150 GIKNFLENILTIE 162 (1250)
Q Consensus 150 gi~~L~~~i~~~l 162 (1250)
|++++++++.+.+
T Consensus 153 gi~~l~~~l~~~i 165 (168)
T 1u8z_A 153 NVDKVFFDLMREI 165 (168)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 252
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.70 E-value=1.6e-17 Score=174.42 Aligned_cols=151 Identities=15% Similarity=0.081 Sum_probs=89.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....|+++.+.....+.+++ ..+.+|||||.. ++......++
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 78 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAYY 78 (183)
T ss_dssp EEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh---------hhhhhHHHHH
Confidence 48999999999999999999976532 34556677777777778877 689999999975 3334455678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.|
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 157 (183)
T 2fu5_C 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFMETSAKANIN 157 (183)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEECCC---CC
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 89999999999987422111 123333333 36899999999999764432 2222 3455 789999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+..
T Consensus 158 i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 158 VENAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 253
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.70 E-value=6.3e-17 Score=171.67 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=108.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCee--EEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKK--YILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..+||+++|.+|||||||+|++++.....++..++++.+.....+.+++.. +.+|||+|..... .+. .
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~-------~~~---~ 74 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN-------EWL---H 74 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----------CTT---G
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh-------hhH---H
Confidence 468999999999999999999997555555566667777766777888764 4679999984321 111 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDIN-IANFIYE----SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~ 332 (1250)
..+++.+|++++|+|.++..+..... ++..+.+ .+.|+++|+||+|+.+..... +..+.+.... ..++++
T Consensus 75 ~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~----~~~~~e 150 (192)
T 2cjw_A 75 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF----DXKFIE 150 (192)
T ss_dssp GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----TCEEEE
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHh----CCceEE
Confidence 23456789999999998864444332 3333433 378999999999997532221 1111222222 368999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+||++|.|++++|+++.+.+..
T Consensus 151 ~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 151 TSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred eccccCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887643
No 254
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.70 E-value=5.5e-17 Score=166.98 Aligned_cols=148 Identities=21% Similarity=0.154 Sum_probs=105.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....+++.+.....+.+++. .+.+|||||+... ......++
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~ 72 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF---------ASMRDLYI 72 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---------HHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh---------HHHHHHHh
Confidence 48999999999999999999987632 33444555555566677765 5889999997633 23345567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHH-H---hcCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFL-R---KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l-~---~~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|.+++.+... ..+...+ + ..+.|+++|+||+|+.+.... .++. ..+. +++++||++|.
T Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 151 (167)
T 1kao_A 73 KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC-PFMETSAKSKT 151 (167)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-CEEEECTTCHH
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCC-CEEEecCCCCc
Confidence 89999999999986322111 1122222 2 247899999999998654433 2222 3454 78999999999
Q ss_pred chhHHHHHHHHhh
Q psy17091 150 GIKNFLENILTIE 162 (1250)
Q Consensus 150 gi~~L~~~i~~~l 162 (1250)
|++++++.+.+.+
T Consensus 152 gi~~l~~~l~~~~ 164 (167)
T 1kao_A 152 MVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998755
No 255
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=6.8e-17 Score=170.46 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=104.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++...... .| |.+.....+.+++..+.+|||||+.. +......++..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~ 83 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVVHT--SP--TIGSNVEEIVINNTRFLMWDIGGQES---------LRSSWNTYYTN 83 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCEEE--EC--CSCSSCEEEEETTEEEEEEECCC-------------CGGGHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCcC--cC--CCccceEEEEECCEEEEEEECCCCHh---------HHHHHHHHhcC
Confidence 5899999999999999999998765422 22 33344456677899999999999753 22334556789
Q ss_pred CCEEEEEEeCCCCCChhh--HHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHh------cCCCCcEecccccC
Q psy17091 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYE------LGIGNPHIISALYG 148 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~------~~~~~~~~iSA~~g 148 (1250)
+|++++|+|++++.+... ..+..+++. .+.|+++|+||+|+.+.... .+... .+. .++++||++|
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g 162 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW-HIQACCALTG 162 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE-EEEECBTTTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCc-EEEEccCCCC
Confidence 999999999987533222 223333332 47899999999999764322 22221 122 5789999999
Q ss_pred CchhHHHHHHHHhhCCcc
Q psy17091 149 NGIKNFLENILTIELPYK 166 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~~~ 166 (1250)
.|++++++++.+.+....
T Consensus 163 ~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 163 EGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp BTHHHHHHHHHHHHCC--
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 999999999998876543
No 256
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.70 E-value=2e-16 Score=188.11 Aligned_cols=162 Identities=20% Similarity=0.164 Sum_probs=122.5
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcce--eccCCCCcceeeEEEEEEEc-----------------------CeeEEE
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV--ITYDTPGTTRDSIKSLFEYN-----------------------NKKYIL 234 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~--~~~~~~gtT~~~~~~~~~~~-----------------------~~~~~l 234 (1250)
...++|+++|++|+|||||+++|+|.... .....+|+|.+.......+. ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 34699999999999999999999975432 22345788887665544431 167999
Q ss_pred EecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCC-CHHHHHHHHHHHHcC-CcEEEEEeccccCCccchH
Q psy17091 235 IDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-SAQDINIANFIYESG-RSLIVCVNKWDSIIHNQRK 312 (1250)
Q Consensus 235 iDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~-~~~d~~~~~~~~~~~-~p~iiv~NK~Dl~~~~~~~ 312 (1250)
|||||+ +.|. ......+..+|++++|+|++++. ..+..+.+..+...+ .|+++|+||+|+.+.....
T Consensus 88 iDtPGh----------~~f~-~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 88 IDAPGH----------EALM-TTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp EECSSH----------HHHH-HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred EECCCh----------HHHH-HHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHH
Confidence 999998 3443 33456678899999999999987 778887777766666 4799999999998765444
Q ss_pred HHHHHHHHHhcc--CCCCeEEEeecCCCCChHHHHHHHHHHH
Q psy17091 313 IIKNNIKKKLNF--LSFAMFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 313 ~~~~~l~~~l~~--~~~~~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
+..+++.+.+.. ....|++++||++|.|+++|+++|.+.+
T Consensus 157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 455566666543 2357999999999999999999887654
No 257
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.70 E-value=4.8e-17 Score=175.82 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=109.3
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|+|++.... ..+.+|+.+.....+..++ ..+.+|||||+.+... .
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~ 91 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-----------V 91 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-----------T
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-----------H
Confidence 34699999999999999999999976532 3344444444444444444 4688899999844321 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHH--HHHHHHHHHc--CCcEEEEEeccccCCc-------------cchHHHHHHHHH
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQD--INIANFIYES--GRSLIVCVNKWDSIIH-------------NQRKIIKNNIKK 320 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d--~~~~~~~~~~--~~p~iiv~NK~Dl~~~-------------~~~~~~~~~l~~ 320 (1250)
...+++.+|++++|+|+++..+..+ ..++..+.+. +.|+++|+||+|+.+. ....+..+.+.+
T Consensus 92 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 171 (214)
T 3q3j_B 92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK 171 (214)
T ss_dssp GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH
Confidence 1246789999999999998755554 2455555554 7999999999999752 111122223333
Q ss_pred HhccCCCCeEEEeecCCCCC-hHHHHHHHHHHHhhcc
Q psy17091 321 KLNFLSFAMFNFISAIKLNN-INSFMESINHVYDSSI 356 (1250)
Q Consensus 321 ~l~~~~~~~iv~iSA~~g~g-v~~l~~~i~~~~~~~~ 356 (1250)
.+ +..+++++||++|.| ++++|+.+.+.+....
T Consensus 172 ~~---~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 172 QL---GAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp HH---TCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred Hc---CCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 33 334899999999998 9999999988765433
No 258
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.70 E-value=9.1e-17 Score=165.59 Aligned_cols=149 Identities=16% Similarity=0.106 Sum_probs=103.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++ ..+.+|||||+.... .....++
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~ 72 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT---------AMRDLYM 72 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST---------THHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH---------HHHHHHh
Confidence 4899999999999999999998753 23344444444444444543 478999999976432 2334567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+..+++++||++|.
T Consensus 73 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (167)
T 1c1y_A 73 KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKI 152 (167)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCC
Confidence 78999999999986322111 223333322 37899999999999764432 2233 2323478999999999
Q ss_pred chhHHHHHHHHhh
Q psy17091 150 GIKNFLENILTIE 162 (1250)
Q Consensus 150 gi~~L~~~i~~~l 162 (1250)
|++++++.+.+.+
T Consensus 153 gi~~l~~~l~~~i 165 (167)
T 1c1y_A 153 NVNEIFYDLVRQI 165 (167)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 259
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.2e-16 Score=171.83 Aligned_cols=152 Identities=20% Similarity=0.183 Sum_probs=108.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|++||.+|||||||+|++++....++..+++++.+.....+.+++. .+.+|||+|.... .......++
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~--------~~~l~~~~~ 109 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE--------NEWLHDHCM 109 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH--------HHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch--------hhhHHHHHH
Confidence 589999999999999999999877666677777777777777778876 4678999997521 112234456
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc--h--hHH--hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS--L--DFY--ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~--~--~~~--~~~~~~~~~iSA~~g~ 149 (1250)
+.+|++++|+|.++..+... ..+...+.. .++|+++|+||+|+.+.... . ..+ ..+. +++++||++|.
T Consensus 110 ~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~-~~~e~SAk~g~ 188 (211)
T 2g3y_A 110 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-KFIETSAAVQH 188 (211)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 78999999999986322111 223333443 36899999999999754333 1 122 3343 67999999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++.+.+.+.
T Consensus 189 ~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 189 NVKELFEGIVRQVR 202 (211)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988663
No 260
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.70 E-value=3.5e-17 Score=174.57 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=99.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|++|||||||+|+|++.+.....+ |.......+.+++..+.+|||||+.. +...+..+++.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~~~ 92 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELTIAGMTFTTFDLGGHIQ---------ARRVWKNYLPA 92 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC------C----CCCCSCEEEEETTEEEEEEEECC-------------CCGGGGGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCccCC----CCCceeEEEEECCEEEEEEECCCcHh---------hHHHHHHHHhc
Confidence 489999999999999999999876443222 33333456778899999999999753 22334556889
Q ss_pred CCEEEEEEeCCCCCChh--hHHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHhc-----------------CC
Q psy17091 83 SDIIIFIVDGRQGLVEQ--DKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYEL-----------------GI 137 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~--~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~~-----------------~~ 137 (1250)
+|++++|+|++++.+.. ...+..+++. .+.|+++|+||+|+.+.... .++... ..
T Consensus 93 ~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 93 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCce
Confidence 99999999998743222 1222233321 47899999999999753222 222221 11
Q ss_pred CCcEecccccCCchhHHHHHHHHhh
Q psy17091 138 GNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 138 ~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
.+++++||++|.|++++++++.+.+
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHhc
Confidence 2578999999999999999997643
No 261
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.70 E-value=8.3e-17 Score=169.95 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=108.3
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|+|++... ...+.+|+.+.....+..++. .+.+|||||+.+... +
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~------- 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----C------- 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----T-------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----H-------
Confidence 4579999999999999999999997652 345566666555555666654 577899999865431 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH------cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCe
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE------SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAM 329 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~------~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~ 329 (1250)
..+++.+|++++|+|+++..+.++.. ++..+.. .+.|+++|+||+|+.+.... .+..+.+.+.++ .+
T Consensus 86 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~----~~ 160 (187)
T 3c5c_A 86 -ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG----CL 160 (187)
T ss_dssp -HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT----CE
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC----Cc
Confidence 13568899999999999764443332 3444443 48999999999999653222 122233333333 58
Q ss_pred EEEeec-CCCCChHHHHHHHHHHHh
Q psy17091 330 FNFISA-IKLNNINSFMESINHVYD 353 (1250)
Q Consensus 330 iv~iSA-~~g~gv~~l~~~i~~~~~ 353 (1250)
++++|| ++|.|++++|+.+.+.+.
T Consensus 161 ~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 161 FFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp EEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred EEEEeecCccccHHHHHHHHHHHHh
Confidence 999999 899999999999977653
No 262
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.70 E-value=8.5e-17 Score=177.59 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=114.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCC-CcceeeeEEEEEECCEEEEEEecCCCCcchh---hHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYP-GLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK---KGIMHEMTKQTKQ 78 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~-~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~ 78 (1250)
.+|+++|++|||||||+|+|++.+.......+ ++|+.+....+.+++..+.||||||+.+... +.+...+......
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~ 101 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLL 101 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHh
Confidence 48999999999999999999999876554433 5899999999999999999999999864331 1122334444445
Q ss_pred HhhcCCEEEEEEeCCCCCChhhHHHHHHHHhc------CCCEEEEEeCCCCCCCccc-----------hhHH-hcCCCCc
Q psy17091 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLRKS------GQPIVLVINKSENINSSIS-----------LDFY-ELGIGNP 140 (1250)
Q Consensus 79 ~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~------~~p~ilv~NK~D~~~~~~~-----------~~~~-~~~~~~~ 140 (1250)
+...+|++|+|+|++. ++..+..+.+++.+. +.|+++|.||+|+.+.... .++. ..|. .+
T Consensus 102 ~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~-~~ 179 (247)
T 3lxw_A 102 SAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG-RV 179 (247)
T ss_dssp HTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT-CE
T ss_pred cCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC-eE
Confidence 5599999999999985 777777777777763 6799999999998653211 1222 2232 44
Q ss_pred Eecccc-----cCCchhHHHHHHHHhhCCc
Q psy17091 141 HIISAL-----YGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 141 ~~iSA~-----~g~gi~~L~~~i~~~l~~~ 165 (1250)
+.+++. .+.|+.+|++.+.+.+.+.
T Consensus 180 ~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 180 CAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 445443 3689999999999887653
No 263
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.70 E-value=1.2e-16 Score=169.07 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=108.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeee-EEEEEECC-----------EEEEEEecCCCCcchhhHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRH-YGEGYIGK-----------KSFIIIDTGGFEPEVKKGIMH 70 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~-~~~~~~~~-----------~~~~liDTpG~~~~~~~~~~~ 70 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.. ...+..++ ..+.+|||||+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------- 81 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE--------- 81 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG---------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH---------
Confidence 48999999999999999999987643 233444444444 33444443 489999999975
Q ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCC
Q psy17091 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGN 139 (1250)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~ 139 (1250)
++...+..++..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +
T Consensus 82 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~ 160 (195)
T 3bc1_A 82 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGI-P 160 (195)
T ss_dssp GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-C
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-C
Confidence 334456777899999999999987433222 233333333 47899999999999764332 2232 3455 7
Q ss_pred cEecccccCCchhHHHHHHHHhhCC
Q psy17091 140 PHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 140 ~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
++++||++|.|++++++.+.+.+..
T Consensus 161 ~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 161 YFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999887643
No 264
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=173.27 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=107.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++....... ...|.+.....+.+++..+.+|||||..... .....++..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~~ 90 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR---------NLWEHYYKE 90 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTTG---------GGGGGGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHHH---------HHHHHHHhc
Confidence 58999999999999999999987632222 2335556667778888999999999976332 334456789
Q ss_pred CCEEEEEEeCCCCCChh--hHHHHHHHHh-----cCCCEEEEEeCCCCCCCccc---hhHHh-cC----CCCcEeccccc
Q psy17091 83 SDIIIFIVDGRQGLVEQ--DKLITNFLRK-----SGQPIVLVINKSENINSSIS---LDFYE-LG----IGNPHIISALY 147 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~--~~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~---~~~~~-~~----~~~~~~iSA~~ 147 (1250)
+|++++|+|++++.+.. ...+..++.. .+.|+++|+||+|+.+.... .+... .. ...++++||++
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999998742211 1233334443 47899999999999764332 22221 11 11578999999
Q ss_pred CCchhHHHHHHHHhhC
Q psy17091 148 GNGIKNFLENILTIEL 163 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~ 163 (1250)
|.|++++++.+.+.+.
T Consensus 171 ~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TBTHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987653
No 265
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.70 E-value=8.3e-17 Score=169.55 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=107.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++.. .....| |.......+.+++..+.+|||||+. ++......+++.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~---------~~~~~~~~~~~~ 85 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED--VDTISP--TLGFNIKTLEHRGFKLNIWDVGGQK---------SLRSYWRNYFES 85 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC--CSSCCC--CSSEEEEEEEETTEEEEEEEECCSH---------HHHTTGGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCcccc--cCccceEEEEECCEEEEEEECCCCH---------hHHHHHHHHhcC
Confidence 589999999999999999999877 233333 3445556677789999999999975 344455667889
Q ss_pred CCEEEEEEeCCCCCChhh--HHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHhc-----CCCCcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYEL-----GIGNPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~~-----~~~~~~~iSA~~g~ 149 (1250)
+|++++|+|++++.+... ..+...++. .+.|+++|+||+|+.+.... .+.... ...+++++||++|.
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (186)
T 1ksh_A 86 TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGE 165 (186)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCC
Confidence 999999999987533222 223333332 46899999999999765433 122111 11157899999999
Q ss_pred chhHHHHHHHHhhCC
Q psy17091 150 GIKNFLENILTIELP 164 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~ 164 (1250)
|++++++.+.+.+.+
T Consensus 166 gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 166 DLLPGIDWLLDDISS 180 (186)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999887643
No 266
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.70 E-value=2.4e-17 Score=195.78 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=115.7
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCC--------ccee---c-----cCCCCcceeeEEEEEEEcCeeEEEEecCCCCCC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGE--------NRVI---T-----YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~--------~~~~---~-----~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 243 (1250)
...++|+++|++|+|||||+|+|++. .... . ...+|+|.+.....+..++..+.+|||||+.+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~- 87 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD- 87 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG-
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH-
Confidence 34699999999999999999999873 1000 0 11568888887777777789999999999943
Q ss_pred CcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEeccccCCc-cchHHHHHHHHHH
Q psy17091 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIH-NQRKIIKNNIKKK 321 (1250)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p-~iiv~NK~Dl~~~-~~~~~~~~~l~~~ 321 (1250)
|. .....+++.+|++++|+|++++..++..+++..+...++| +++|+||+|+.+. ...+...+++.+.
T Consensus 88 ---------f~-~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~ 157 (405)
T 2c78_A 88 ---------YI-KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDL 157 (405)
T ss_dssp ---------GH-HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred ---------HH-HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence 22 2344667899999999999999999999999988888999 8999999999853 2233344455555
Q ss_pred hccCC----CCeEEEeecCCCCCh
Q psy17091 322 LNFLS----FAMFNFISAIKLNNI 341 (1250)
Q Consensus 322 l~~~~----~~~iv~iSA~~g~gv 341 (1250)
+...+ ..|++++||++|.|+
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v 181 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQ 181 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHH
T ss_pred HHHhcccccCCCEEEccHHHhhhh
Confidence 54333 378999999999874
No 267
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.70 E-value=9e-18 Score=197.83 Aligned_cols=158 Identities=22% Similarity=0.351 Sum_probs=117.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE-EEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
++|+++|.+|||||||+|+|++...+.++..+++|.+.....+++.+. .+.+|||||+.+... +.......+..++.
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~--l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGE--LGRLRVEKARRVFY 112 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCT--TCCCCHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccc--hhHHHHHHHHHHHh
Confidence 589999999999999999999998777889999999999999998875 999999999975431 11112234566788
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc--hhHH--hcCCCCcEecccccCCchhHHHHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFY--ELGIGNPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~--~~~~--~~~~~~~~~iSA~~g~gi~~L~~~ 157 (1250)
.+|++|+|+|+ +.......+.+++++.++|+++|+||+|+...... .+.+ ..+. +++++||++|.|++++++.
T Consensus 113 ~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~-~v~~vSAktg~gI~eL~~~ 189 (423)
T 3qq5_A 113 RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEA-KVLLVSALQKKGFDDIGKT 189 (423)
T ss_dssp SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTC-CCCCCSSCCTTSTTTHHHH
T ss_pred cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCC-CEEEEECCCCCCHHHHHHH
Confidence 99999999999 56777788889999999999999999999876554 2222 2333 7899999999999999999
Q ss_pred HHHhhCCc
Q psy17091 158 ILTIELPY 165 (1250)
Q Consensus 158 i~~~l~~~ 165 (1250)
+.+.+++.
T Consensus 190 L~~~l~~~ 197 (423)
T 3qq5_A 190 ISEILPGD 197 (423)
T ss_dssp HHHHSCCC
T ss_pred HHHhhhhh
Confidence 99988654
No 268
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.70 E-value=6.4e-17 Score=166.92 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=108.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||.... ......++
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 75 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF---------DAITKAYY 75 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT---------TCCCHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH---------HHHHHHHh
Confidence 58999999999999999999987643 344566667777777777764 8999999996532 22345567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCch
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~gi 151 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.|+
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 76 RGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRTSVKEDLNV 154 (168)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECBTTTTBSS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEEecCCCCCH
Confidence 89999999999987322211 123333322 37899999999998764332 2232 3455 7899999999999
Q ss_pred hHHHHHHHHhh
Q psy17091 152 KNFLENILTIE 162 (1250)
Q Consensus 152 ~~L~~~i~~~l 162 (1250)
+++++.+.+.+
T Consensus 155 ~~l~~~l~~~~ 165 (168)
T 1z2a_A 155 SEVFKYLAEKH 165 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 269
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.69 E-value=4.3e-17 Score=168.59 Aligned_cols=150 Identities=21% Similarity=0.151 Sum_probs=105.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.+.. ....++++.+.....+.+++ ..+.+|||||.... ...+..++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~ 73 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF---------RTITTAYY 73 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGGGT---------SCCCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh---------hhhHHHHh
Confidence 58999999999999999999987643 45567777777777777765 47899999997532 22345567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCch
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNGI 151 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi 151 (1250)
+.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv 152 (170)
T 1g16_A 74 RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNV 152 (170)
T ss_dssp TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTC-CEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCC-eEEEEECCCCCCH
Confidence 89999999999986432211 223333333 36899999999999543322 2222 3455 7899999999999
Q ss_pred hHHHHHHHHhhC
Q psy17091 152 KNFLENILTIEL 163 (1250)
Q Consensus 152 ~~L~~~i~~~l~ 163 (1250)
+++++.+.+.+.
T Consensus 153 ~~l~~~l~~~~~ 164 (170)
T 1g16_A 153 NEIFFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 270
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.69 E-value=1.2e-16 Score=171.50 Aligned_cols=151 Identities=21% Similarity=0.127 Sum_probs=112.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++. .+.||||||..... ..+..++
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~ 78 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR---------TITSSYY 78 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT---------CCCGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHH---------HHHHHhc
Confidence 58999999999999999999987743 445677777777777778774 89999999976322 2344567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.|
T Consensus 79 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 157 (206)
T 2bcg_Y 79 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM-PFLETSALDSTN 157 (206)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEECCTTTCTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 89999999999987432222 123333333 35799999999999765433 2233 3444 789999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+..
T Consensus 158 i~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 158 VEDAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887754
No 271
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.69 E-value=5.8e-17 Score=196.58 Aligned_cols=155 Identities=22% Similarity=0.277 Sum_probs=116.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCc------------------------------ceeccCCCCcceeeEEEEEEEcCe
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGEN------------------------------RVITYDTPGTTRDSIKSLFEYNNK 230 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~------------------------------~~~~~~~~gtT~~~~~~~~~~~~~ 230 (1250)
..+||+++|++|+|||||+|+|++.. .......+|+|.+.....+..++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 46999999999999999999998541 112234569999998888998999
Q ss_pred eEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCC-------CCHHHHHHHHHHHHcCC-cEEEEEec
Q psy17091 231 KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-------ISAQDINIANFIYESGR-SLIVCVNK 302 (1250)
Q Consensus 231 ~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~-------~~~~d~~~~~~~~~~~~-p~iiv~NK 302 (1250)
.+.+|||||+.+ |. .....+++.+|++++|+|++++ +..+..+.+..+...+. |+|+|+||
T Consensus 112 ~~~iiDTPG~~~----------f~-~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK 180 (483)
T 3p26_A 112 NFTIVDAPGHRD----------FV-PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 180 (483)
T ss_dssp EEEEECCCCCGG----------GH-HHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred eEEEEECCCcHH----------HH-HHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEEC
Confidence 999999999943 22 3345677899999999999987 45678888888877774 59999999
Q ss_pred cccCCc--cchHHHHHHHHHHhccCC----CCeEEEeecCCCCChHHHHH
Q psy17091 303 WDSIIH--NQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINSFME 346 (1250)
Q Consensus 303 ~Dl~~~--~~~~~~~~~l~~~l~~~~----~~~iv~iSA~~g~gv~~l~~ 346 (1250)
+|+.+. ...++..+++...+...+ ..+++++||++|.|++++..
T Consensus 181 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 181 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred cCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 999862 233444555555443222 36899999999999998653
No 272
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.69 E-value=7.1e-17 Score=171.42 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=110.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++. .+.+|||||... +......++
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~ 92 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEE---------YDRLRPLSY 92 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG---------GTTTGGGGC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHH---------HHHHhHhhc
Confidence 4899999999999999999998773 344445555555556667765 569999999753 233445578
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHhc--CCCEEEEEeCCCCCCCc--cc-----hhHH-hcCCCCcEecccccC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINSS--IS-----LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~D~~~~~--~~-----~~~~-~~~~~~~~~iSA~~g 148 (1250)
.++|++++|+|++++.+... ..+...++.. +.|+++|+||+|+.+.. .. .++. ..+...++++||++|
T Consensus 93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 89999999999987433222 2344555543 68999999999987532 11 2222 456645899999999
Q ss_pred CchhHHHHHHHHhhCCc
Q psy17091 149 NGIKNFLENILTIELPY 165 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~~ 165 (1250)
.|++++++.+.+.+...
T Consensus 173 ~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp BSHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999876543
No 273
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.69 E-value=1.9e-16 Score=169.33 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=109.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....+.++.+.....+..++ ..+.+|||||+. .+...+..++
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 78 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE---------RYRTITTAYY 78 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC-SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG---------GGHHHHHTTG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEEECCeEEEEEEEECCCch---------hhcchHHHhh
Confidence 58999999999999999999987743 23344445555555555655 488999999975 2334566778
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..++ +++++||++|.|
T Consensus 79 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 157 (203)
T 1zbd_A 79 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEASAKDNIN 157 (203)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC-EEEECBTTTTBS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC-eEEEEECCCCCC
Confidence 99999999999987422111 223333433 36899999999999765433 2222 3455 789999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+.+
T Consensus 158 i~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 158 VKQTFERLVDVICE 171 (203)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876643
No 274
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.69 E-value=4.4e-17 Score=170.99 Aligned_cols=144 Identities=19% Similarity=0.250 Sum_probs=104.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++.......+..+.+ ...+.+++..+.+|||||+... ......++..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~~ 88 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----VEEIVINNTRFLMWDIGGQESL---------RSSWNTYYTN 88 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSS----CEEEEETTEEEEEEEESSSGGG---------TCGGGGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCccCCcCcee----eEEEEECCEEEEEEECCCCHhH---------HHHHHHHhcc
Confidence 58999999999999999999988764444444433 3456678899999999998632 2334566789
Q ss_pred CCEEEEEEeCCCCCChhh--HHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHh------cCCCCcEecccccC
Q psy17091 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYE------LGIGNPHIISALYG 148 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~------~~~~~~~~iSA~~g 148 (1250)
+|++++|+|++++.+... ..+..+++. .+.|+++|+||+|+.+.... .+... .+. .++++||++|
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g 167 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW-HIQACCALTG 167 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECBTTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCce-EEEEccCCCC
Confidence 999999999987533322 223333332 57899999999999764322 12211 111 5789999999
Q ss_pred CchhHHHHHHHH
Q psy17091 149 NGIKNFLENILT 160 (1250)
Q Consensus 149 ~gi~~L~~~i~~ 160 (1250)
.|++++++.+.+
T Consensus 168 ~gi~~l~~~l~~ 179 (181)
T 2h17_A 168 EGLCQGLEWMMS 179 (181)
T ss_dssp BTHHHHHHHHHT
T ss_pred cCHHHHHHHHHh
Confidence 999999999875
No 275
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.69 E-value=6.6e-17 Score=191.24 Aligned_cols=148 Identities=17% Similarity=0.181 Sum_probs=113.4
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcce---------------eccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcc
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRV---------------ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKT 246 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~---------------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 246 (1250)
.++|+++|++|+|||||+++|++.... ......|+|.+.....+..++..+.+|||||+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~------ 76 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH------ 76 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH------
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh------
Confidence 589999999999999999999863100 01125688888866667777889999999999
Q ss_pred hhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEeccccCCc-cchHHHHHHHHHHhcc
Q psy17091 247 FEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIH-NQRKIIKNNIKKKLNF 324 (1250)
Q Consensus 247 ~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p-~iiv~NK~Dl~~~-~~~~~~~~~l~~~l~~ 324 (1250)
+.|. .....+++.+|++++|+|++++...+..+.+..+...++| +++|+||+|+.+. ...+...+++++.+..
T Consensus 77 ----~~f~-~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 151 (397)
T 1d2e_A 77 ----ADYV-KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE 151 (397)
T ss_dssp ----HHHH-HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHH-HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHH
Confidence 3443 2345678899999999999999999999988888888999 6899999999852 2223344455555543
Q ss_pred CC----CCeEEEeecCCCCC
Q psy17091 325 LS----FAMFNFISAIKLNN 340 (1250)
Q Consensus 325 ~~----~~~iv~iSA~~g~g 340 (1250)
.+ ..|++++||++|.|
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALE 171 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHT
T ss_pred cCCCcccCcEEEeehhhccc
Confidence 33 36999999999875
No 276
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.69 E-value=7e-17 Score=172.50 Aligned_cols=151 Identities=16% Similarity=0.094 Sum_probs=103.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.||||||.. .+...+..++
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 95 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE---------RFRSVTRSYY 95 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH---------HHSCCCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH---------hHHHHHHHHh
Confidence 48999999999999999999987643 34456667677677777777 589999999953 3334455678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. .++++||++|.|
T Consensus 96 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~g~g 174 (200)
T 2o52_A 96 RGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLETSALTGEN 174 (200)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEECTTTCTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999987432221 123332332 36899999999998654332 2232 3343 789999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+..
T Consensus 175 i~~l~~~l~~~i~~ 188 (200)
T 2o52_A 175 VEEAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 277
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.69 E-value=8.6e-17 Score=190.73 Aligned_cols=163 Identities=19% Similarity=0.161 Sum_probs=116.6
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcce--------------eeEE-----EEEEEcCeeEEEEecCCC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTR--------------DSIK-----SLFEYNNKKYILIDTAGI 240 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~--------------~~~~-----~~~~~~~~~~~liDTpG~ 240 (1250)
.+.++|+++|++|+|||||+|+|++.........+.+|. +... .........+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 346999999999999999999999853322111111111 0000 000112368999999998
Q ss_pred CCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCC-CHHHHHHHHHHHHcC-CcEEEEEeccccCCccchHHHHHHH
Q psy17091 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-SAQDINIANFIYESG-RSLIVCVNKWDSIIHNQRKIIKNNI 318 (1250)
Q Consensus 241 ~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~-~~~d~~~~~~~~~~~-~p~iiv~NK~Dl~~~~~~~~~~~~l 318 (1250)
.+ |. ......++.+|++++|+|++++. ..+..+.+..+...+ +|+++|+||+|+.+.....+..+++
T Consensus 86 ~~----------~~-~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i 154 (403)
T 3sjy_A 86 EV----------LM-ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQI 154 (403)
T ss_dssp GG----------GH-HHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HH----------HH-HHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHH
Confidence 33 22 23456778999999999999987 778888888777766 4899999999998766555666666
Q ss_pred HHHhccC--CCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 319 KKKLNFL--SFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 319 ~~~l~~~--~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
.+.+... ...+++++||++|.|+++|++++.+.++
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 6666432 3568999999999999999999876543
No 278
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.69 E-value=3e-16 Score=164.96 Aligned_cols=149 Identities=16% Similarity=0.114 Sum_probs=108.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ...+++++.+.....+.+++. .+.||||||.... ......++
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 87 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---------AAIRDNYF 87 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---------HHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc---------HHHHHHHh
Confidence 5899999999999999999998763 455566666666666677774 7899999997632 23445567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 166 (187)
T 2a9k_A 88 RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYVETSAKTRA 166 (187)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-eEEEeCCCCCC
Confidence 89999999999986322111 122222222 37899999999998764332 2233 3444 78999999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++.+.+.+.
T Consensus 167 gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 167 NVDKVFFDLMREIR 180 (187)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 279
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.69 E-value=1.2e-16 Score=170.57 Aligned_cols=150 Identities=22% Similarity=0.138 Sum_probs=106.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC---------------------------------
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--------------------------------- 49 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--------------------------------- 49 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 58999999999999999999988743 33445555666655555554
Q ss_pred ------EEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhh-HHHHHHHH-hcCCCEEEEEeCC
Q psy17091 50 ------KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQD-KLITNFLR-KSGQPIVLVINKS 121 (1250)
Q Consensus 50 ------~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~~~~~l~-~~~~p~ilv~NK~ 121 (1250)
..+.||||||..... ..+..++..+|++|+|+|++++.+... ..+...+. ..+.|+++|+||+
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~ 157 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYA---------SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKI 157 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCT---------TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred cCccceeEEEEEECCCcHHHH---------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 789999999965322 335566889999999999987533222 22333333 3568999999999
Q ss_pred CCCCCccc----hhHH-hcCCCCcEecccccCCchhHHHHHHHHhhC
Q psy17091 122 ENINSSIS----LDFY-ELGIGNPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 122 D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
|....... .++. ..+. +++++||++|.|++++++.+.+.+.
T Consensus 158 D~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 158 DKNKFQVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp TCC-CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CcccccCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHH
Confidence 93222221 2333 3444 7899999999999999999987653
No 280
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.69 E-value=1.3e-16 Score=167.00 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=101.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC---CEEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG---KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
.+|+++|.+|||||||+|+|++.... ....|+++.+.....+.++ ...+.+|||||.. .+......+
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~ 78 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE---------RFQSLGVAF 78 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------CC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh---------HhhhhhHHH
Confidence 58999999999999999999987643 3445556666666666665 3589999999965 334455667
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCCEEEEEeCCCCCCCcc-c-----hhHHh-cCCCCcEecc
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK-------SGQPIVLVINKSENINSSI-S-----LDFYE-LGIGNPHIIS 144 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~-------~~~p~ilv~NK~D~~~~~~-~-----~~~~~-~~~~~~~~iS 144 (1250)
+..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+..... . .++.. .+..+++++|
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~S 158 (182)
T 1ky3_A 79 YRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTS 158 (182)
T ss_dssp STTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEB
T ss_pred hhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEe
Confidence 889999999999987432221 122222222 4679999999999854322 1 23333 3444789999
Q ss_pred cccCCchhHHHHHHHHhhC
Q psy17091 145 ALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 145 A~~g~gi~~L~~~i~~~l~ 163 (1250)
|++|.|++++++.+.+.+.
T Consensus 159 a~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 159 AKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987653
No 281
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.69 E-value=9.6e-17 Score=184.40 Aligned_cols=191 Identities=17% Similarity=0.201 Sum_probs=122.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcc-----eeccCCC---Cccee---------------------------------
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENR-----VITYDTP---GTTRD--------------------------------- 219 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~-----~~~~~~~---gtT~~--------------------------------- 219 (1250)
..++|+|+|.+|||||||+|+|+|... ..++..| .++++
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 357899999999999999999999876 4444455 23332
Q ss_pred -----------------eEEEEEEE-cCeeEEEEecCCCCCCCc--chhhHHHHHHHHHHHhhccCcEEEEEecC-CCCC
Q psy17091 220 -----------------SIKSLFEY-NNKKYILIDTAGIRRRNK--TFEVIEKFSVIKTLKSILEANVVILLLDA-QQNI 278 (1250)
Q Consensus 220 -----------------~~~~~~~~-~~~~~~liDTpG~~~~~~--~~~~~e~~~~~~~~~~~~~ad~vllviD~-~~~~ 278 (1250)
.....+.. ++.++.+|||||+.+... ....++++....+..+++.+|++++|+|+ +.++
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 00111111 346899999999965321 11123444456677888999999999997 5565
Q ss_pred CHHH-HHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhcc--CCCCeEEEeecCC---CCChHHHHHHHHHHH
Q psy17091 279 SAQD-INIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNF--LSFAMFNFISAIK---LNNINSFMESINHVY 352 (1250)
Q Consensus 279 ~~~d-~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~--~~~~~iv~iSA~~---g~gv~~l~~~i~~~~ 352 (1250)
+.++ ..+++.+...++|+++|+||+|+.+.... ..+.++..+.. ..+.+++++||.+ +.|++++++.+.+.+
T Consensus 183 ~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 183 ANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp TTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 5444 47888887789999999999999865431 12233332222 3345666667777 889999999988776
Q ss_pred hhc------ccccChhHHHHHHHHHHH
Q psy17091 353 DSS------IIHLSTSRITRALISAIK 373 (1250)
Q Consensus 353 ~~~------~~~~~~~~l~~~l~~~~~ 373 (1250)
+.. ..+.++..++.++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~l~~~lre~l~ 287 (315)
T 1jwy_B 261 KNHPIYKSIANRSGTAYLSKTLNKLLM 287 (315)
T ss_dssp HTCTTGGGSGGGCSHHHHHHHHHHHHH
T ss_pred hCCCccccchhccCHHHHHHHHHHHHH
Confidence 542 234556667776666554
No 282
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.69 E-value=1.2e-16 Score=169.38 Aligned_cols=148 Identities=18% Similarity=0.223 Sum_probs=102.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++.... ...| |.+.....+.+++..+.+|||||++. +...+..++..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~ 96 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNICFTVWDVGGQDK---------IRPLWRHYFQN 96 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC--------------CTTHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCcc--ccCC--cCceeEEEEEECCEEEEEEECCCCHh---------HHHHHHHHhcc
Confidence 58999999999999999999977643 3333 55555667778899999999999752 33345556789
Q ss_pred CCEEEEEEeCCCCCChhh--HHHHHHHHh---cCCCEEEEEeCCCCCCCccchhHH-hcC-------CCCcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELG-------IGNPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~-~~~-------~~~~~~iSA~~g~ 149 (1250)
+|++++|+|++++.+... ..+..++.. .+.|+++|+||+|+.+.....+.. ..+ ..+++++||++|.
T Consensus 97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 999999999987432221 222222222 378999999999997653321111 111 1147899999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++.+.+.+.
T Consensus 177 gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 177 GLYDGLDWLSHELS 190 (192)
T ss_dssp THHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987663
No 283
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.69 E-value=1.4e-16 Score=167.27 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=104.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEE--EEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... .....+++.+........++.. +.+|||||..... .....++
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~ 87 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS---------AMREQYM 87 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC---------SSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH---------HHHHHHH
Confidence 4899999999999999999997753 3344445555546667777764 5569999975322 2334567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHH----hcCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccc-cC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLR----KSGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISAL-YG 148 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~----~~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~-~g 148 (1250)
+.+|++++|+|++++.+... ..+...+. ..+.|+++|+||+|+.+.... .++. ..+. +++++||+ +|
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 166 (183)
T 3kkq_A 88 RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI-PYIETSAKDPP 166 (183)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC-CEEEEBCSSSC
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCC-eEEEeccCCCC
Confidence 88999999999987422111 12222222 256899999999999764443 2222 3454 78999999 99
Q ss_pred CchhHHHHHHHHhh
Q psy17091 149 NGIKNFLENILTIE 162 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l 162 (1250)
.|++++++.+.+.+
T Consensus 167 ~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 167 LNVDKTFHDLVRVI 180 (183)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 284
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.69 E-value=2.8e-16 Score=168.24 Aligned_cols=150 Identities=16% Similarity=0.114 Sum_probs=110.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
++|+++|.+|||||||+|+|++... ...+++++.+.....+.+++. .+.||||||.... ......++
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 83 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---------AAIRDNYF 83 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---------HHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh---------HHHHHHHH
Confidence 5899999999999999999998763 455666666666666777775 7899999997633 23445667
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 162 (206)
T 2bov_A 84 RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYVETSAKTRA 162 (206)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECTTTCT
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCC-eEEEEeCCCCC
Confidence 89999999999986322111 122222322 37899999999999764333 2222 3454 78999999999
Q ss_pred chhHHHHHHHHhhCC
Q psy17091 150 GIKNFLENILTIELP 164 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~ 164 (1250)
|++++++.+.+.+..
T Consensus 163 gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 163 NVDKVFFDLMREIRA 177 (206)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887654
No 285
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.69 E-value=1.7e-16 Score=171.66 Aligned_cols=149 Identities=19% Similarity=0.214 Sum_probs=109.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC------------CEEEEEEecCCCCcchhhHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG------------KKSFIIIDTGGFEPEVKKGIMH 70 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~~~ 70 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.++ ...+.||||||..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~--------- 95 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE--------- 95 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH---------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH---------
Confidence 48999999999999999999987642 2333444445544455554 4579999999953
Q ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHh-------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCC
Q psy17091 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK-------SGQPIVLVINKSENINSSIS-----LDFY-ELGI 137 (1250)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~-------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~ 137 (1250)
++...+..++..+|++|+|+|+++. .....+..|+.. .+.|+++|+||+|+...... .++. ..+.
T Consensus 96 ~~~~~~~~~~~~~d~iilV~D~~~~--~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~ 173 (217)
T 2f7s_A 96 RFRSLTTAFFRDAMGFLLMFDLTSQ--QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI 173 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTCH--HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred hHHhHHHHHhcCCCEEEEEEECcCH--HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCC
Confidence 4556677788999999999999863 233344556554 36799999999999764333 2233 3344
Q ss_pred CCcEecccccCCchhHHHHHHHHhhCC
Q psy17091 138 GNPHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 138 ~~~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
+++++||++|.|++++++++.+.+..
T Consensus 174 -~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 174 -PYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp -CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred -cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999887654
No 286
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.69 E-value=2.3e-16 Score=183.18 Aligned_cols=170 Identities=26% Similarity=0.322 Sum_probs=114.0
Q ss_pred eeE-EEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 182 YIK-VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 182 ~~~-i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
.++ |+|+|.+|||||||+|+|++... .+++.+++|+|.....+.+++..+.+|||||+.+.. ....++.|. .++.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~l-p~~lve~f~--~tl~ 253 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGI-PPQIVDAFF--VTLS 253 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSC-CGGGHHHHH--HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcC-CHHHHHHHH--HHHH
Confidence 344 99999999999999999999764 667899999999999999999999999999985532 223445553 4566
Q ss_pred hhccCcEEEEEecCCCCC--CHHHHH-HHHHHHH---cCCcEEEEEeccccCCccchH--HHHHHHHHHhccCCCCeEEE
Q psy17091 261 SILEANVVILLLDAQQNI--SAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRK--IIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~--~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~--~~~~~l~~~l~~~~~~~iv~ 332 (1250)
.+..+|++++|+|++++. .+.... +...+.+ .++|+++|+||+|+.+....+ ...+.+...+. ....++++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~-~~~~~~~~ 332 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY-SPIFDVIP 332 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC-SCEEEEEE
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc-CCCCcEEE
Confidence 789999999999998864 222222 2233333 468999999999997643111 11111222221 11246899
Q ss_pred eecCCCCChHHHHHHHHHHHhhcc
Q psy17091 333 ISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+||++|.|++++++.+.+.+....
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EECCCCcCHHHHHHHHHHHhcccC
Confidence 999999999999999988765543
No 287
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.69 E-value=8.2e-17 Score=170.49 Aligned_cols=146 Identities=23% Similarity=0.236 Sum_probs=103.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++....... .|.......+.+++..+.+|||||+.... .....+++.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~ 90 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQAR---------RLWKDYFPE 90 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEETTEEEEEEECCCSGGGT---------TSGGGGCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEECCEEEEEEECCCCHHHH---------HHHHHHHhc
Confidence 58999999999999999999987754222 24444566778889999999999986322 233456789
Q ss_pred CCEEEEEEeCCCCCChhh--HHHHHHHH---hcCCCEEEEEeCCCCCCCccc---hhHHhc------------CCCCcEe
Q psy17091 83 SDIIIFIVDGRQGLVEQD--KLITNFLR---KSGQPIVLVINKSENINSSIS---LDFYEL------------GIGNPHI 142 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~--~~~~~~l~---~~~~p~ilv~NK~D~~~~~~~---~~~~~~------------~~~~~~~ 142 (1250)
+|++++|+|++++.+... ..+..+++ ..+.|+++|+||+|+.+.... .+.... ...++++
T Consensus 91 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T 1m2o_B 91 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFM 170 (190)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEE
Confidence 999999999987532221 22223332 147899999999999763222 222211 1125789
Q ss_pred cccccCCchhHHHHHHHHh
Q psy17091 143 ISALYGNGIKNFLENILTI 161 (1250)
Q Consensus 143 iSA~~g~gi~~L~~~i~~~ 161 (1250)
+||++|.|++++++.+.+.
T Consensus 171 ~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 171 CSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CBTTTTBSHHHHHHHHHTT
T ss_pred eECCcCCCHHHHHHHHHhh
Confidence 9999999999999998753
No 288
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.69 E-value=6.7e-17 Score=171.21 Aligned_cols=150 Identities=19% Similarity=0.077 Sum_probs=106.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.||||||.... ......++
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 91 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF---------RSITRSYY 91 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCC-C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT---------SCCCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh---------hhhHHHHh
Confidence 48999999999999999999987754 33445556666666777776 48899999997532 22345567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. .++++||++|.|
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g 170 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL-IFMETSAKTACN 170 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECTTTCTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999987322222 223333433 37899999999999754332 2222 3454 789999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 171 i~~l~~~l~~~i~ 183 (191)
T 2a5j_A 171 VEEAFINTAKEIY 183 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
No 289
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.69 E-value=3.1e-17 Score=178.22 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=111.8
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHh-CCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLL-GENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~-~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
...+||+++|.+|||||||+|+++ +.......+.+|+|.......+...+..+.+|||||+.+.... .
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 81 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL-----------R 81 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC-----------C
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH-----------H
Confidence 347999999999999999999954 4334455678888887655544444567889999998544311 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH--cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
..+++.+|++++|+|++++.+.++. .++..+.+ .++|+++|+||+|+.+.....+.. .+.+.. ..+++++||
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~----~~~~~~~Sa 156 (221)
T 3gj0_A 82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSI-VFHRKK----NLQYYDISA 156 (221)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGC-CHHHHH----TCEEEECBG
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHH-HHHHHc----CCEEEEEeC
Confidence 2456789999999999986544433 23334433 279999999999997643322111 122222 368999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q psy17091 336 IKLNNINSFMESINHVYD 353 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (1250)
++|.|++++++++.+.+.
T Consensus 157 ~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 157 KSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp GGTBTTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999977654
No 290
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=3.8e-16 Score=166.15 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=108.3
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
+.+||+++|.+|||||||+|+|++.... ..+.+|+.+.....+.+++ ..+.+|||||+.+ . ...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~-----------~~~ 92 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-T-----------IQR 92 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-C-----------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-c-----------cch
Confidence 4699999999999999999999986542 2333444444444556665 4688899999965 1 112
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH----cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEE
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE----SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~ 332 (1250)
..+++.+|++++|+|+++..+..+. .++..+.+ .++|+++|+||+|+.+.... .+..+.+.+.. ..++++
T Consensus 93 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 168 (196)
T 2atv_A 93 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL----ACAFYE 168 (196)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----TSEEEE
T ss_pred hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh----CCeEEE
Confidence 3456789999999999885433322 23333333 47999999999999763222 22223333333 368999
Q ss_pred eecCCCC-ChHHHHHHHHHHHhh
Q psy17091 333 ISAIKLN-NINSFMESINHVYDS 354 (1250)
Q Consensus 333 iSA~~g~-gv~~l~~~i~~~~~~ 354 (1250)
+||++|. |++++++++.+.+.+
T Consensus 169 ~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 169 CSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp CCTTTCTTCHHHHHHHHHHHHHH
T ss_pred ECCCcCCcCHHHHHHHHHHHHHh
Confidence 9999999 999999999877643
No 291
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.68 E-value=4.2e-17 Score=174.80 Aligned_cols=149 Identities=20% Similarity=0.182 Sum_probs=108.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++. .+.+|||||+... ......++
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~~~~ 99 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY---------DRLRPLSY 99 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG---------TTTGGGGC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh---------HHHHHHHh
Confidence 4899999999999999999997653 455666777776666666665 4559999998532 23344568
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHhc--CCCEEEEEeCCCCCCCcc------------c-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRKS--GQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~~--~~p~ilv~NK~D~~~~~~------------~-----~~~~-~~~~~ 138 (1250)
..+|++++|+|++++.+.... .+...++.. +.|+++|+||+|+..... . ..+. ..+..
T Consensus 100 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 4gzl_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc
Confidence 899999999999874333332 355555554 789999999999876532 1 1122 34554
Q ss_pred CcEecccccCCchhHHHHHHHHhh
Q psy17091 139 NPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
+++++||++|.|++++++.+.+.+
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 180 KYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998643
No 292
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.68 E-value=3e-16 Score=186.33 Aligned_cols=161 Identities=20% Similarity=0.161 Sum_probs=111.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCccee--ccCCCCcceeeEEEEEEE---------------c--------CeeEEEE
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI--TYDTPGTTRDSIKSLFEY---------------N--------NKKYILI 235 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~--~~~~~gtT~~~~~~~~~~---------------~--------~~~~~li 235 (1250)
+.++|+++|++|+|||||+++|++..... ....+|+|.+.......+ + ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 46999999999999999999999754322 233578888765443332 1 1679999
Q ss_pred ecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCC-CHHHHHHHHHHHHcC-CcEEEEEeccccCCccchHH
Q psy17091 236 DTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-SAQDINIANFIYESG-RSLIVCVNKWDSIIHNQRKI 313 (1250)
Q Consensus 236 DTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~-~~~d~~~~~~~~~~~-~p~iiv~NK~Dl~~~~~~~~ 313 (1250)
||||+ +.|. ......+..+|++++|+|++++. ..+..+.+..+...+ .|+++|+||+|+.+.....+
T Consensus 87 DtPGh----------~~f~-~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~ 155 (408)
T 1s0u_A 87 DSPGH----------ETLM-ATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEE 155 (408)
T ss_dssp ECSSH----------HHHH-HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTT
T ss_pred ECCCH----------HHHH-HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHH
Confidence 99998 4443 23446667889999999999987 778877777666666 47999999999987544333
Q ss_pred HHHHHHHHhcc--CCCCeEEEeecCCCCChHHHHHHHHHHH
Q psy17091 314 IKNNIKKKLNF--LSFAMFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 314 ~~~~l~~~l~~--~~~~~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
..+++.+.+.. ....+++++||++|.|+++|+++|.+.+
T Consensus 156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 44455555543 2357899999999999999999886644
No 293
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.68 E-value=3.7e-17 Score=187.77 Aligned_cols=163 Identities=21% Similarity=0.212 Sum_probs=119.8
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC-eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhh
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSI 262 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~ 262 (1250)
+|+|+|.||||||||+|+|++.+. .++++++||.++....+.+++ ..+.+|||||+.........+ ....++++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l----~~~fl~~i 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGL----GHQFLRHI 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTT----HHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchh----HHHHHHHH
Confidence 689999999999999999998654 446899999999888888876 899999999973311100001 12345667
Q ss_pred ccCcEEEEEecCCC---CCCHHHH-HHHHHHHH-----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEe
Q psy17091 263 LEANVVILLLDAQQ---NISAQDI-NIANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 263 ~~ad~vllviD~~~---~~~~~d~-~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
+.+|++++|+|+++ .-+.++. .+...+.. .++|+++|+||+|+.+.. +..+++.+.+.. ..+++++
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~---e~~~~l~~~l~~--~~~v~~i 309 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA---ENLEAFKEKLTD--DYPVFPI 309 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH---HHHHHHHHHCCS--CCCBCCC
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH---HHHHHHHHHhhc--CCCEEEE
Confidence 88999999999987 3333443 34455554 379999999999997542 223444444432 1578999
Q ss_pred ecCCCCChHHHHHHHHHHHhhcc
Q psy17091 334 SAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
||+++.|+++|+++|.+.+....
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSCC
T ss_pred ECCCCcCHHHHHHHHHHHHhhCc
Confidence 99999999999999988876543
No 294
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=167.44 Aligned_cols=150 Identities=20% Similarity=0.126 Sum_probs=106.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+..++ ..+.+|||||+.... .....++
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~ 95 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFS-HDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR---------AITSAYY 95 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCC-SSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC---------TTHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHHHh
Confidence 58999999999999999999987754 22334444444444555544 578999999986332 3345567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. .++++||++|.|
T Consensus 96 ~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 174 (193)
T 2oil_A 96 RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL-LFLETSALDSTN 174 (193)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEECTTTCTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999987432211 223333333 36799999999999764332 2233 3444 789999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 175 i~~l~~~l~~~i~ 187 (193)
T 2oil_A 175 VELAFETVLKEIF 187 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
No 295
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.68 E-value=1.1e-16 Score=169.32 Aligned_cols=150 Identities=18% Similarity=0.147 Sum_probs=107.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++.+.+.....+...+ ..+.+|||||..... .....++
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~ 92 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR---------TITTAYY 92 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC---------CSGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh---------hhHHHhc
Confidence 58999999999999999999987743 23344444455555555554 488999999976432 2244567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..++ +++++||++|.|
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 171 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF-EFFEASAKENIN 171 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTTTBS
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEEECCCCCC
Confidence 89999999999986422222 234444444 37899999999999764332 2222 3455 789999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 172 i~~l~~~l~~~i~ 184 (189)
T 2gf9_A 172 VKQVFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988664
No 296
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.68 E-value=1.5e-16 Score=170.50 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=110.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.||||||.... ......++
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 78 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF---------QSLGVAFY 78 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG---------SCSCCGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH---------HHhHHHHH
Confidence 48999999999999999999988744 34556667777777776665 58999999997532 12234567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCCEEEEEeCCCCCCCccc----hhHHh-cCCCCcEeccccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK-------SGQPIVLVINKSENINSSIS----LDFYE-LGIGNPHIISALY 147 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~-------~~~p~ilv~NK~D~~~~~~~----~~~~~-~~~~~~~~iSA~~ 147 (1250)
..+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++.. ....+++++||++
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 79 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKE 158 (207)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 89999999999987432222 122222221 36799999999999743322 23333 3334789999999
Q ss_pred CCchhHHHHHHHHhhCCc
Q psy17091 148 GNGIKNFLENILTIELPY 165 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~~ 165 (1250)
|.|++++++.+.+.+...
T Consensus 159 g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 159 AINVEQAFQTIARNALKQ 176 (207)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999998877543
No 297
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=5.4e-17 Score=171.96 Aligned_cols=151 Identities=17% Similarity=0.143 Sum_probs=107.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEE--CCEEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI--GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
..+|+++|.+|||||||+|+|++.... ....+..+.+.....+.. .+..+.||||||.. .+......+
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 92 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFT-PAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE---------RYRTITTAY 92 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTC-CCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH---------HCHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCC-cccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH---------HHHHHHHHH
Confidence 358999999999999999999987632 122222233333334444 45789999999943 445567778
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
+..+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+.+.... ..+. ..+. .++++||++|.
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 171 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF-DFFEASAKENI 171 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 899999999999986322211 234444444 47899999999998654433 1222 4455 78999999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++.+.+.+.
T Consensus 172 gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 172 SVRQAFERLVDAIC 185 (191)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988664
No 298
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.68 E-value=3.9e-16 Score=160.34 Aligned_cols=149 Identities=22% Similarity=0.199 Sum_probs=106.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ....++++.+.....+..++. .+.+|||||..... .....++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~~~ 72 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---------AMRDQYM 72 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC---------HHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh---------HHHHHhh
Confidence 4899999999999999999998753 334455555555556666664 57899999976432 2334567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|.|
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 151 (166)
T 2ce2_X 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGI-PYIETSAKTRQG 151 (166)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC-CEEEECTTTCTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCC-eEEEecCCCCCC
Confidence 78999999999986322111 223333332 27899999999998763322 2232 3455 789999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 152 i~~l~~~l~~~~~ 164 (166)
T 2ce2_X 152 VEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 299
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.68 E-value=1.6e-16 Score=190.13 Aligned_cols=156 Identities=25% Similarity=0.309 Sum_probs=116.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceec----------cCC----------------------CCcceeeEEEEEEEc
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVIT----------YDT----------------------PGTTRDSIKSLFEYN 228 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~----------~~~----------------------~gtT~~~~~~~~~~~ 228 (1250)
..++|+++|++|+|||||+|+|++....+. +.. .|+|.+.....+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 468999999999999999999986432211 111 456777666677778
Q ss_pred CeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCC-cEEEEEeccccCC
Q psy17091 229 NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR-SLIVCVNKWDSII 307 (1250)
Q Consensus 229 ~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~-p~iiv~NK~Dl~~ 307 (1250)
+..+.+|||||+.+ |. .....+++.+|++++|+|++++...+..+.+..+...+. |+++|+||+|+.+
T Consensus 103 ~~~~~iiDtpGh~~----------f~-~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 103 KRKFIIADTPGHEQ----------YT-RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SEEEEEEECCCSGG----------GH-HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred CceEEEEECCChHH----------HH-HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 88999999999843 22 123356789999999999999999999888888877786 5999999999986
Q ss_pred c--cchHHHHHHHHHHhccCC----CCeEEEeecCCCCChHHHHHH
Q psy17091 308 H--NQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINSFMES 347 (1250)
Q Consensus 308 ~--~~~~~~~~~l~~~l~~~~----~~~iv~iSA~~g~gv~~l~~~ 347 (1250)
. .......+++.+.+...+ ..+++++||++|.|++++++.
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 3 223344555665554443 368999999999999987654
No 300
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=3.7e-16 Score=161.77 Aligned_cols=149 Identities=20% Similarity=0.171 Sum_probs=102.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....+++. .........++ ..+.+|||||+.... .....++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------~~~~~~~ 72 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFR-ESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQFP---------AMQRLSI 72 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCC-SSCCCCSC-EEEEEEEEETTEEEEEEEEECCSCSSCH---------HHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCcc-ccEEEEEEECCEEEEEEEEECCCchhhH---------HHHHHhc
Confidence 58999999999999999999987632 12223222 22222334444 478999999986332 3345567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g 148 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. +++++||++|
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 151 (172)
T 2erx_A 73 SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC-AFMETSAKLN 151 (172)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEECBTTTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEecCCCC
Confidence 88999999999986422221 233343443 36899999999998754433 1222 3344 6899999999
Q ss_pred CchhHHHHHHHHhhC
Q psy17091 149 NGIKNFLENILTIEL 163 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~ 163 (1250)
.|++++++.+.+.+.
T Consensus 152 ~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 152 HNVKELFQELLNLEK 166 (172)
T ss_dssp BSHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999988654
No 301
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=168.43 Aligned_cols=150 Identities=19% Similarity=0.149 Sum_probs=101.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++ ..+.||||||... +...+..++
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 98 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNEFR-ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER---------FRSIAKSYF 98 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTT---------CHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCCccceeEEEEEEECCEEEEEEEEECCCCcc---------hhhhHHHHH
Confidence 58999999999999999999987632 12233334444445556666 4699999999763 234456678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCC------Cccc-----hhHH-hcCCCCcEecc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENIN------SSIS-----LDFY-ELGIGNPHIIS 144 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~------~~~~-----~~~~-~~~~~~~~~iS 144 (1250)
..+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+.+ .... .++. ..+. +++++|
T Consensus 99 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~S 177 (199)
T 2p5s_A 99 RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA-LFCETS 177 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC-EEEECC
T ss_pred hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC-eEEEee
Confidence 89999999999987433222 223344443 3689999999999862 1222 1222 3444 689999
Q ss_pred cccCCchhHHHHHHHHhhC
Q psy17091 145 ALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 145 A~~g~gi~~L~~~i~~~l~ 163 (1250)
|++|.|++++++.+.+.+.
T Consensus 178 A~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 178 AKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 302
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.68 E-value=4.2e-16 Score=164.46 Aligned_cols=158 Identities=26% Similarity=0.359 Sum_probs=108.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchh--hHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK--KGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~--~~~~~~~~~~~~~~ 79 (1250)
+++|+++|.+|||||||+|+|++... .++..|++|.+..... +. .+.+|||||+..... ....+.+......+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEE--ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEe--cC--CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 37899999999999999999998874 3677888888776543 33 789999999643210 11123333333333
Q ss_pred ----hhcCCEEEEEEeCCCC-----------CChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc--hhHH-hcCCC---
Q psy17091 80 ----IIESDIIIFIVDGRQG-----------LVEQDKLITNFLRKSGQPIVLVINKSENINSSIS--LDFY-ELGIG--- 138 (1250)
Q Consensus 80 ----~~~ad~il~v~D~~~~-----------~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~--~~~~-~~~~~--- 138 (1250)
...++++++|+|.... ....+..+...+...+.|+++|+||+|+...... .++. .++..
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 155 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE 155 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhc
Confidence 4557788888887531 1111223445555678999999999999765421 2222 34442
Q ss_pred ---CcEecccccCCchhHHHHHHHHhhCC
Q psy17091 139 ---NPHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 139 ---~~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
.++++||++|.|++++++.+.+.+.+
T Consensus 156 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 156 IDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 35899999999999999999987654
No 303
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.3e-16 Score=169.29 Aligned_cols=150 Identities=19% Similarity=0.139 Sum_probs=108.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++ ..+.+|||||+.... .....++
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 87 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD---------RLRPLSY 87 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST---------TTGGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh---------HHHHHhc
Confidence 4899999999999999999998752 34555566555555666666 578999999986432 2334567
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHhc--CCCEEEEEeCCCCCCCc------------cc-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINSS------------IS-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~D~~~~~------------~~-----~~~~-~~~~~ 138 (1250)
..+|++++|+|++++.+... ..+...++.. +.|+++|+||+|+.+.. .. .++. ..+..
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 89999999999987432222 1344555554 78999999999997642 11 1222 34544
Q ss_pred CcEecccccCCchhHHHHHHHHhhC
Q psy17091 139 NPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
.++++||++|.|++++++.+.+.+.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 7899999999999999999987653
No 304
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.67 E-value=1.3e-16 Score=167.59 Aligned_cols=152 Identities=20% Similarity=0.157 Sum_probs=109.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++. .+.+|||||+... ......++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 74 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY---------DRLRPLSY 74 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG---------TTTGGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH---------HHHHHHhc
Confidence 4899999999999999999997653 344455555555556667665 5669999998632 23334467
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHhc--CCCEEEEEeCCCCCCCcc------------c-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRKS--GQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~~--~~p~ilv~NK~D~~~~~~------------~-----~~~~-~~~~~ 138 (1250)
..+|++++|+|++++.+.... .+...+... +.|+++|+||+|+.+... . .++. ..+..
T Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (186)
T 1mh1_A 75 PQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 154 (186)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 899999999999874333222 345555543 789999999999875421 1 1122 33444
Q ss_pred CcEecccccCCchhHHHHHHHHhhCCc
Q psy17091 139 NPHIISALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
+++++||++|.|++++++.+.+.+...
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 155 KYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred EEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 789999999999999999999887654
No 305
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.2e-17 Score=175.13 Aligned_cols=152 Identities=20% Similarity=0.127 Sum_probs=105.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.||||||+... ...+..++
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 83 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFN-MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY---------RAITSAYY 83 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCC-C------CCSEEEEEEEETTEEEEEEEECCTTTTTT---------TCCCGGGT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCccch---------hhhHHHHh
Confidence 48999999999999999999988754 33456666777777777877 58899999997632 22344567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
+.+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. .++++||++|.|
T Consensus 84 ~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g 162 (223)
T 3cpj_B 84 RGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL-LFTETSALNSEN 162 (223)
T ss_dssp TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC-EEEECCCC-CCC
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 89999999999987433222 223333433 26899999999999754332 2233 3343 778999999999
Q ss_pred hhHHHHHHHHhhCCc
Q psy17091 151 IKNFLENILTIELPY 165 (1250)
Q Consensus 151 i~~L~~~i~~~l~~~ 165 (1250)
++++++.+.+.+...
T Consensus 163 i~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 163 VDKAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 306
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.67 E-value=2e-16 Score=166.51 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=99.9
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccC-CCCcceeeEEEEEEE-----cCeeEEEEecCCCCCCCcchhhHHHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEY-----NNKKYILIDTAGIRRRNKTFEVIEKFSV 255 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~~~~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~e~~~~ 255 (1250)
.+||+++|.+|||||||+|+|.+......+. .+.++.+.....+.+ ....+.+|||||+ +++..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~ 71 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR----------EEFYS 71 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH----------HHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC----------HHHHH
Confidence 4799999999999999999999864333322 333344544433332 3457889999998 23322
Q ss_pred HHHHHhhccCcEEEEEecCCCCC-CHHH-HHHHHHHHH--cCCcEEEEEeccccCCccchHHHHHHHHHHhc-cCCCC--
Q psy17091 256 IKTLKSILEANVVILLLDAQQNI-SAQD-INIANFIYE--SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN-FLSFA-- 328 (1250)
Q Consensus 256 ~~~~~~~~~ad~vllviD~~~~~-~~~d-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~-~~~~~-- 328 (1250)
. ...+++.+|++++|+|.+++. +... ..++..+.. .+.|+++|+||+|+.+............+.+. ..+..
T Consensus 72 ~-~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 72 T-HPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp T-SHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred h-hHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence 1 124567899999999998863 1221 223333333 37999999999999764333222222222222 22222
Q ss_pred -eEEEeecCCCC-ChHHHHHHHHHHHhh
Q psy17091 329 -MFNFISAIKLN-NINSFMESINHVYDS 354 (1250)
Q Consensus 329 -~iv~iSA~~g~-gv~~l~~~i~~~~~~ 354 (1250)
+++++||++|. |+++|++.+.+.+.+
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhc
Confidence 38999999997 999999999877654
No 307
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.67 E-value=5.3e-17 Score=186.46 Aligned_cols=162 Identities=22% Similarity=0.239 Sum_probs=120.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC-EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.++|+++|.||||||||+|+|++.+.. +.++|++|.+...+.+.+.+ ..+.||||||+.+.... ...+...+...+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~--~~~l~~~fl~~i 234 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ--GVGLGHQFLRHI 234 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC--TTTTHHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCcccccc--cchhHHHHHHHH
Confidence 367999999999999999999988754 68899999999998888876 89999999997532100 012334455567
Q ss_pred hcCCEEEEEEeCCC---CCChhh-HHHHHHHHh-----cCCCEEEEEeCCCCCCCccc-hhHH-hcCC-CCcEecccccC
Q psy17091 81 IESDIIIFIVDGRQ---GLVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS-LDFY-ELGI-GNPHIISALYG 148 (1250)
Q Consensus 81 ~~ad~il~v~D~~~---~~~~~~-~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~-~~~~-~~~~-~~~~~iSA~~g 148 (1250)
..+|++|+|+|+++ .....+ ..+.+.+.. .++|+++|+||+|+...... .++. .+.. .+++++||+++
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCC
Confidence 78999999999975 222222 335555655 36899999999999764433 2222 2221 36899999999
Q ss_pred CchhHHHHHHHHhhCCcc
Q psy17091 149 NGIKNFLENILTIELPYK 166 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~~~ 166 (1250)
.|+++|++.+.+.+.+..
T Consensus 315 ~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 315 EGLRELLFEVANQLENTP 332 (342)
T ss_dssp STTHHHHHHHHHHHTSCC
T ss_pred cCHHHHHHHHHHHHhhCc
Confidence 999999999999886543
No 308
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.67 E-value=3.9e-16 Score=186.55 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=113.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccc------------------------------cCCCcceeeeEEEEEECCEEE
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVA------------------------------NYPGLTRDRHYGEGYIGKKSF 52 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~------------------------------~~~~~T~~~~~~~~~~~~~~~ 52 (1250)
.+|+++|++|+|||||+|+|++....+.. ..+|+|.+.....+++.+..+
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~ 97 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHF 97 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEE
Confidence 48999999999999999999765433222 236899999999999999999
Q ss_pred EEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC-------hhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q psy17091 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLV-------EQDKLITNFLRKSGQP-IVLVINKSENI 124 (1250)
Q Consensus 53 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~-------~~~~~~~~~l~~~~~p-~ilv~NK~D~~ 124 (1250)
.||||||+. ++...+..++..+|++|+|+|++++.. .+..+.+..+...+.| +++|+||+|+.
T Consensus 98 ~iiDTPGh~---------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 98 TILDAPGHK---------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred EEEECCChH---------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 999999975 566777788899999999999998764 4566677777778888 99999999986
Q ss_pred CCcc-------c----hhHH-hcCC-----CCcEecccccCCchhHHHH
Q psy17091 125 NSSI-------S----LDFY-ELGI-----GNPHIISALYGNGIKNFLE 156 (1250)
Q Consensus 125 ~~~~-------~----~~~~-~~~~-----~~~~~iSA~~g~gi~~L~~ 156 (1250)
.... . .+++ .+++ .+++++||++|.|++++.+
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 4211 1 1222 3343 2579999999999999654
No 309
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.7e-17 Score=201.30 Aligned_cols=155 Identities=22% Similarity=0.296 Sum_probs=119.7
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccC------------------------------CCCcceeeEEEEEEEcC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYD------------------------------TPGTTRDSIKSLFEYNN 229 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~------------------------------~~gtT~~~~~~~~~~~~ 229 (1250)
...++|+++|++|+|||||+|+|++....+... .+|+|.+.....+..++
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346899999999999999999999765433321 37999999888899999
Q ss_pred eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCC-------CCHHHHHHHHHHHHcCCc-EEEEEe
Q psy17091 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-------ISAQDINIANFIYESGRS-LIVCVN 301 (1250)
Q Consensus 230 ~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~-------~~~~d~~~~~~~~~~~~p-~iiv~N 301 (1250)
..+++|||||+.+. ...+..+++.+|++|+|+|++.+ ...+....+..+...+.| +|+|+|
T Consensus 245 ~~~~iiDTPG~e~f-----------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvN 313 (611)
T 3izq_1 245 ANFTIVDAPGHRDF-----------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 313 (611)
T ss_dssp CEEEEEECCSSSCH-----------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEE
T ss_pred ceEEEEECCCCccc-----------HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEe
Confidence 99999999999442 23445678999999999999876 456777777777777755 999999
Q ss_pred ccccCCc--cchHHHHHHHHHHhccCC----CCeEEEeecCCCCChHHHH
Q psy17091 302 KWDSIIH--NQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINSFM 345 (1250)
Q Consensus 302 K~Dl~~~--~~~~~~~~~l~~~l~~~~----~~~iv~iSA~~g~gv~~l~ 345 (1250)
|+|+.+. ....+..+++...+...+ ..+++++||++|.|++++.
T Consensus 314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 9999862 233444555554443222 3689999999999998874
No 310
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.67 E-value=6.5e-17 Score=170.18 Aligned_cols=160 Identities=15% Similarity=0.151 Sum_probs=106.1
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|+|++.... ..+..|+.+.....+.+++ ..+.+|||||+.+....
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 71 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------- 71 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT-----------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence 34799999999999999999999976532 2333343333334455554 46788999998433211
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCccch----------HHHHHHHHHHhc
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQR----------KIIKNNIKKKLN 323 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~----------~~~~~~l~~~l~ 323 (1250)
...+++.+|++++|+|+++..+..+. .++..+.+ .+.|+++|+||+|+.+.... ....++..+...
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 151 (184)
T 1m7b_A 72 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK 151 (184)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred HHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH
Confidence 12466899999999999986554443 24444444 37999999999999742110 000111222222
Q ss_pred cCCCCeEEEeecC-CCCChHHHHHHHHHHH
Q psy17091 324 FLSFAMFNFISAI-KLNNINSFMESINHVY 352 (1250)
Q Consensus 324 ~~~~~~iv~iSA~-~g~gv~~l~~~i~~~~ 352 (1250)
..+..+++++||+ +|.|++++|+.+.+.+
T Consensus 152 ~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 152 QIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 2234689999999 6899999999987764
No 311
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.67 E-value=5.6e-16 Score=163.79 Aligned_cols=149 Identities=23% Similarity=0.236 Sum_probs=103.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ....++++.+.....+.+++. .+.+|||||.. ++......++
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~ 90 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE---------EYSAMRDQYM 90 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------C
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChH---------HHHHHHHHhh
Confidence 4899999999999999999998753 344555666666666777764 58899999965 3334556678
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|+.+..+..+ ..+...+.. .+.|+++|+||+|+...... .++. ..++ +++++||++|.|
T Consensus 91 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 169 (190)
T 3con_A 91 RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGI-PFIETSAKTRQG 169 (190)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC-CEEECCTTTCTT
T ss_pred CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 89999999999987432221 223333332 37899999999998763322 2332 3455 789999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 170 i~~l~~~l~~~~~ 182 (190)
T 3con_A 170 VEDAFYTLVREIR 182 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988664
No 312
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=9.3e-17 Score=187.06 Aligned_cols=213 Identities=14% Similarity=0.181 Sum_probs=134.4
Q ss_pred CchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcce-----eccCCCC--------
Q psy17091 149 NGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRV-----ITYDTPG-------- 215 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~-----~~~~~~g-------- 215 (1250)
..+.++++.+...+...... .....++|+|+|.+|||||||+|+|+|.++. .++..|+
T Consensus 7 ~~l~~~~~~l~d~l~~~g~~---------~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~ 77 (353)
T 2x2e_A 7 EDLIPLVNRLQDAFSAIGQN---------ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT 77 (353)
T ss_dssp CSCHHHHHHHHHHHHTTTCG---------GGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHcCCC---------CCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC
Confidence 34556666666554432110 0123579999999999999999999998765 4455565
Q ss_pred --------------ccee-----------------------eEEEEEEEc-CeeEEEEecCCCCCCCc---chhhHHHHH
Q psy17091 216 --------------TTRD-----------------------SIKSLFEYN-NKKYILIDTAGIRRRNK---TFEVIEKFS 254 (1250)
Q Consensus 216 --------------tT~~-----------------------~~~~~~~~~-~~~~~liDTpG~~~~~~---~~~~~e~~~ 254 (1250)
+|++ .....+... +.+++||||||+.+... ..+..+.+.
T Consensus 78 ~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~ 157 (353)
T 2x2e_A 78 TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIR 157 (353)
T ss_dssp SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHH
T ss_pred ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHH
Confidence 3433 011112222 46899999999975321 111122332
Q ss_pred HHHHHHhhc-cCcEEEEEecCCCCCCHHHHH-HHHHHHHcCCcEEEEEeccccCCccc-hHHHHHHHHHHhcc--CCCCe
Q psy17091 255 VIKTLKSIL-EANVVILLLDAQQNISAQDIN-IANFIYESGRSLIVCVNKWDSIIHNQ-RKIIKNNIKKKLNF--LSFAM 329 (1250)
Q Consensus 255 ~~~~~~~~~-~ad~vllviD~~~~~~~~d~~-~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~l~~--~~~~~ 329 (1250)
.....+++ .++++++|+|++..++.++.. +++.+...+.|+++|+||+|+.+... ... .++..... .++.+
T Consensus 158 -~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~---~~~~~~~~l~~~~~~ 233 (353)
T 2x2e_A 158 -DMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARD---VLENKLLPLRRGYIG 233 (353)
T ss_dssp -HHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHH---HHTTCSSCCTTCEEE
T ss_pred -HHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHH---HHhCCcccccCCceE
Confidence 22334554 456777788888877777664 77777778999999999999986433 221 12221111 23457
Q ss_pred EEEeecCCCCChHHHHHHHHHH---------HhhcccccChhHHHHHHHHHHHc
Q psy17091 330 FNFISAIKLNNINSFMESINHV---------YDSSIIHLSTSRITRALISAIKN 374 (1250)
Q Consensus 330 iv~iSA~~g~gv~~l~~~i~~~---------~~~~~~~~~~~~l~~~l~~~~~~ 374 (1250)
++++||++|.|++++++++.+. +.....+..+..+.+++++.+..
T Consensus 234 v~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~ 287 (353)
T 2x2e_A 234 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTN 287 (353)
T ss_dssp CCCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHH
T ss_pred EEeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHH
Confidence 8999999999999999998762 22333456677788777766554
No 313
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.67 E-value=9.4e-17 Score=170.53 Aligned_cols=153 Identities=17% Similarity=0.085 Sum_probs=103.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccC-------CCcceeeeEEE--E-EE--CCEEEEEEecCCCCcchhhHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANY-------PGLTRDRHYGE--G-YI--GKKSFIIIDTGGFEPEVKKGIMH 70 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~-------~~~T~~~~~~~--~-~~--~~~~~~liDTpG~~~~~~~~~~~ 70 (1250)
.+|+++|.+|||||||+|.+.+......... ...|....... + .+ ....+.+|||||+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------ 88 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN------ 88 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS------
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH------
Confidence 4899999999999999998887653321110 11122111111 1 11 23579999999986332
Q ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCChhh----HHHHHHHHh-----cCCCEEEEEeCCCCCCCccc---hhHH-hcCC
Q psy17091 71 EMTKQTKQAIIESDIIIFIVDGRQGLVEQD----KLITNFLRK-----SGQPIVLVINKSENINSSIS---LDFY-ELGI 137 (1250)
Q Consensus 71 ~~~~~~~~~~~~ad~il~v~D~~~~~~~~~----~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~---~~~~-~~~~ 137 (1250)
.....+++.+|++|+|+|++++....+ ..+.+|+.. .+.|+++|+||+|+.+.... .++. ..+.
T Consensus 89 ---~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ---ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGK 165 (198)
T ss_dssp ---HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCC
T ss_pred ---HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCC
Confidence 345567899999999999985433322 335556654 47899999999999765333 3333 3343
Q ss_pred CCcEecccccCCchhHHHHHHHHhhCC
Q psy17091 138 GNPHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 138 ~~~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
..++++||++|.|++++++.+.+.+..
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 378999999999999999999886643
No 314
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.67 E-value=1e-17 Score=206.63 Aligned_cols=153 Identities=27% Similarity=0.347 Sum_probs=95.2
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceecc------------------------------CCCCcceeeEEEEEEEcC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITY------------------------------DTPGTTRDSIKSLFEYNN 229 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~------------------------------~~~gtT~~~~~~~~~~~~ 229 (1250)
...++|+++|++|+|||||+|+|++....+.+ ..+|+|++.....+.+++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 34689999999999999999999753322221 157999999888898889
Q ss_pred eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCC-------CHHHHHHHHHHHHcCCc-EEEEEe
Q psy17091 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI-------SAQDINIANFIYESGRS-LIVCVN 301 (1250)
Q Consensus 230 ~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~-------~~~d~~~~~~~~~~~~p-~iiv~N 301 (1250)
..+.||||||+.++... ...+++.+|++|+|+|++++. ..+....+..+...++| +|+|+|
T Consensus 255 ~~i~iiDTPGh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviN 323 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVN 323 (592)
T ss_dssp ----CCEEESSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEE
T ss_pred eEEEEEECCChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEe
Confidence 99999999999754311 134557899999999999853 77888888888888987 999999
Q ss_pred ccccCC--ccchHHHHHHHHHHh-ccCCC----CeEEEeecCCCCChHH
Q psy17091 302 KWDSII--HNQRKIIKNNIKKKL-NFLSF----AMFNFISAIKLNNINS 343 (1250)
Q Consensus 302 K~Dl~~--~~~~~~~~~~l~~~l-~~~~~----~~iv~iSA~~g~gv~~ 343 (1250)
|+|+.+ ........+++...+ ...++ .+++++||++|.|+++
T Consensus 324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e 372 (592)
T 3mca_A 324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372 (592)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCS
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccc
Confidence 999975 334455667777776 44443 4899999999999984
No 315
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.67 E-value=2.6e-16 Score=192.46 Aligned_cols=160 Identities=24% Similarity=0.220 Sum_probs=116.8
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceec--------------cCCCCcceeeEEEEEEEcC-----eeEEEEecCCCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVIT--------------YDTPGTTRDSIKSLFEYNN-----KKYILIDTAGIR 241 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~--------------~~~~gtT~~~~~~~~~~~~-----~~~~liDTpG~~ 241 (1250)
+..+|+|+|++|+|||||+++|+.....+. ....|+|.......+.|.. ..++||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 357899999999999999999985321111 1136777776666666642 578899999995
Q ss_pred CCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHH
Q psy17091 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK 321 (1250)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~ 321 (1250)
++. .....+++.+|++++|+|++++.+.+....+..+.+.+.|+++|+||+|+.+.. .....+++.+.
T Consensus 85 dF~-----------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~~~ 152 (600)
T 2ywe_A 85 DFS-----------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIEEV 152 (600)
T ss_dssp GGH-----------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred hHH-----------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHHHh
Confidence 432 123456788999999999999999999999998889999999999999997643 44455666665
Q ss_pred hccCCCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 322 LNFLSFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 322 l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
++. ...+++++||++|.|++++++++.+.++
T Consensus 153 lg~-~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 153 LGL-DPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp SCC-CGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCC-CcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 532 2236899999999999999999876654
No 316
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.67 E-value=2.8e-16 Score=192.63 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=114.0
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceec--------------cCCCCcceeeEEEEEEEcC-----eeEEEEecCCCCC
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVIT--------------YDTPGTTRDSIKSLFEYNN-----KKYILIDTAGIRR 242 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~--------------~~~~gtT~~~~~~~~~~~~-----~~~~liDTpG~~~ 242 (1250)
-.+|+|+|++|+|||||+++|+.....+. ....|+|.......+.|.+ ..++||||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 47899999999999999999985321111 1246788877777777752 6788999999954
Q ss_pred CCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHh
Q psy17091 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL 322 (1250)
Q Consensus 243 ~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l 322 (1250)
+. .....+++.+|++++|+|++++.+.+....+..+.+.++|+++|+||+|+.+.. ..+..+++.+.+
T Consensus 84 F~-----------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l 151 (599)
T 3cb4_D 84 FS-----------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEIEDIV 151 (599)
T ss_dssp GH-----------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHHT
T ss_pred HH-----------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHHHHHh
Confidence 32 123456788999999999999999999999988888999999999999997643 445556666665
Q ss_pred ccCCCCeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 323 NFLSFAMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 323 ~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
.. ...+++++||++|.|++++++++.+.++.
T Consensus 152 g~-~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 152 GI-DATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp CC-CCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred CC-CcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 42 23468999999999999999998776543
No 317
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=168.82 Aligned_cols=150 Identities=19% Similarity=0.152 Sum_probs=105.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.. +...+++++.+.....+.+++. .+.+|||||+.... .....++
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~ 89 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFD---------KLRPLCY 89 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCS---------SSGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHH---------HHhHhhc
Confidence 589999999999999999999876 3556667777776667777775 66799999986432 1233467
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCc------------cc-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINSS------------IS-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~D~~~~~------------~~-----~~~~-~~~~~ 138 (1250)
.++|++++|+|++++.+.... .|...+.. .+.|+++|+||+|+.... .. ..+. ..+..
T Consensus 90 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (201)
T 2q3h_A 90 TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAA 169 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 899999999999874332221 24444444 378999999999987531 11 2222 33544
Q ss_pred CcEecccccCCchhHHHHHHHHhhC
Q psy17091 139 NPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
.++++||++|.|++++++.+.+.+.
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHh
Confidence 7899999999999999999987664
No 318
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.67 E-value=2.4e-16 Score=179.67 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=113.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCc-----ccccCCC----------------------cceee--------------
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDA-----LVANYPG----------------------LTRDR-------------- 40 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~-----~v~~~~~----------------------~T~~~-------------- 40 (1250)
.|+|+++|.+|||||||+|+|++.+.. ++...|+ +|++.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 379999999999999999999998754 4555564 44431
Q ss_pred ---------eEEEEEE-CCEEEEEEecCCCCcch----hhHHHHHHHHHHHHHhhcCCEEE-EEEeCCCCCChhhH-HHH
Q psy17091 41 ---------HYGEGYI-GKKSFIIIDTGGFEPEV----KKGIMHEMTKQTKQAIIESDIII-FIVDGRQGLVEQDK-LIT 104 (1250)
Q Consensus 41 ---------~~~~~~~-~~~~~~liDTpG~~~~~----~~~~~~~~~~~~~~~~~~ad~il-~v~D~~~~~~~~~~-~~~ 104 (1250)
....+.. ++..+.||||||+.... .+.+...+...+..++..++.++ +|+|++.++...+. .+.
T Consensus 106 ~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~ 185 (299)
T 2aka_B 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 185 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred cCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHH
Confidence 0011111 13689999999986422 23344566777888888888666 79999887666653 466
Q ss_pred HHHHhcCCCEEEEEeCCCCCCCcc-chhHHh-----c--CCCCcEecccccCCchhHHHHHHHH
Q psy17091 105 NFLRKSGQPIVLVINKSENINSSI-SLDFYE-----L--GIGNPHIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 105 ~~l~~~~~p~ilv~NK~D~~~~~~-~~~~~~-----~--~~~~~~~iSA~~g~gi~~L~~~i~~ 160 (1250)
+++...+.|+++|+||+|+.+... ..+... + ++.+++++||++|.|++++++.+.+
T Consensus 186 ~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 186 KEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 777667899999999999976544 222221 1 2235788999999999999999876
No 319
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.66 E-value=5.8e-16 Score=161.70 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=102.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++..... ..| ++.+.....+.+++. .+.+|||||+.. ..++
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------------~~~~ 70 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEK-TESEQYKKEMLVDGQTHLVLIREEAGAPD--------------AKFS 70 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSS-CSSSEEEEEEEETTEEEEEEEEECSSSCC--------------HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCC-CcceeEEEEEEECCEEEEEEEEECCCCch--------------hHHH
Confidence 489999999999999999999887542 233 333444555667764 678999999763 2356
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh------cCCCEEEEEeCCCCCC--Cccc-----hhHH-hcCCCCcEeccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENIN--SSIS-----LDFY-ELGIGNPHIISA 145 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~D~~~--~~~~-----~~~~-~~~~~~~~~iSA 145 (1250)
+++|++++|+|.+++.+... ..+.+++.. .+.|+++|+||+|+.+ .... .++. ..+..+++++||
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 150 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXA 150 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBT
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEec
Confidence 78999999999987432222 223334443 3679999999999842 2222 2232 233337899999
Q ss_pred ccCCchhHHHHHHHHhhCC
Q psy17091 146 LYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 146 ~~g~gi~~L~~~i~~~l~~ 164 (1250)
++|.|++++++.+.+.+..
T Consensus 151 ~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 151 TYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 320
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.66 E-value=7.8e-16 Score=165.53 Aligned_cols=171 Identities=21% Similarity=0.312 Sum_probs=113.0
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCc-ceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHH--HHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFS--VIK 257 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~--~~~ 257 (1250)
+..+|+++|.+|||||||+|+|+|.. ...+++.+|+|... ..+.+++ .+.+|||||+..........+.+. ...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 46889999999999999999999876 45557888988864 3344444 788999999854321111112222 112
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCC-CCeEEEeecC
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLS-FAMFNFISAI 336 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~-~~~iv~iSA~ 336 (1250)
.....+.++.+++++|++.+.+..+..+..++...+.|+++|.||+|+.+....+.....+...+.... ..+++++||+
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal 181 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSL 181 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeec
Confidence 223346789999999999988887777778888889999999999999875443332344444443332 3578999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q psy17091 337 KLNNINSFMESINHVYDS 354 (1250)
Q Consensus 337 ~g~gv~~l~~~i~~~~~~ 354 (1250)
++.|++++++.+.+....
T Consensus 182 ~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 182 KKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TTBSHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999877643
No 321
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.66 E-value=2.3e-16 Score=167.40 Aligned_cols=152 Identities=21% Similarity=0.190 Sum_probs=104.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|++++....++..+++++.+.....+.+++. .+.+|||+|..... . .....++
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~------~--~~~~~~~ 78 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN------E--WLHDHCM 78 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----------C--TTGGGHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh------h--hHHHhhc
Confidence 589999999999999999999866555666667777776677778876 56789999975311 1 1123346
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc----hhHH--hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS----LDFY--ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~----~~~~--~~~~~~~~~iSA~~g~ 149 (1250)
+.+|++++|+|.++..+... ..+...+.. .+.|+++|+||+|+...... ...+ ..+. +++++||++|.
T Consensus 79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~-~~~e~SA~~g~ 157 (192)
T 2cjw_A 79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX-KFIETSAAVQH 157 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTTTB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCC-ceEEeccccCC
Confidence 78999999999986322221 223333433 36899999999998754333 1122 2333 67899999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++.+.+.+.
T Consensus 158 ~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 NVKELFEGIVRQVR 171 (192)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 322
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.66 E-value=8e-18 Score=203.08 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=124.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEE-cCeeEEEEecCCCCCCCcchhhHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTL 259 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~ 259 (1250)
++++|+++|++|+|||||+|+|.+.+.... ..+|+|.+.....+.+ ++..+++|||||+.++... ..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~-----------~~ 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM-----------RA 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS-SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS-----------BB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH-----------HH
Confidence 357899999999999999999998664444 7889999887776666 5678999999999765422 12
Q ss_pred HhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHH---hccC-CCCeEEEeec
Q psy17091 260 KSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK---LNFL-SFAMFNFISA 335 (1250)
Q Consensus 260 ~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~---l~~~-~~~~iv~iSA 335 (1250)
.+++.+|++++|+|++++..+++...+..+...++|+++|+||+|+.+... ....+++... .... ...+++++||
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~-~~v~~~l~~~~~~~e~~~~~~~iv~vSA 149 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADP-EKVKKELLAYDVVCEDYGGDVQAVHVSA 149 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSC-CSSSSHHHHTTSCCCCSSSSEEECCCCS
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccch-HHHHHHHHhhhhhHHhcCCCceEEEEEC
Confidence 456889999999999999999999999999999999999999999975321 1111122221 1111 2358999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q psy17091 336 IKLNNINSFMESINHVYD 353 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~ 353 (1250)
++|.|+++|++++....+
T Consensus 150 ktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 150 LTGENMMALAEATIALAE 167 (537)
T ss_dssp SSSCSSHHHHHHHHHHHT
T ss_pred CCCCCchhHHHHHHHhhh
Confidence 999999999999876553
No 323
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.66 E-value=5.5e-17 Score=176.23 Aligned_cols=154 Identities=19% Similarity=0.124 Sum_probs=109.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHH-cCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLT-NSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~-~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.+|+++|.+|||||||+|+++ +.......+.+++|...........+..+.+|||||.... ......++.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~ 86 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF---------GGLRDGYYI 86 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT---------SCCCHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH---------hHHHHHHHh
Confidence 589999999999999999954 4334445677777777665544334468999999997532 223345677
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh--cCCCEEEEEeCCCCCCCccc---hhHH-hcCCCCcEecccccCCchhHH
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK--SGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALYGNGIKNF 154 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~--~~~p~ilv~NK~D~~~~~~~---~~~~-~~~~~~~~~iSA~~g~gi~~L 154 (1250)
.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. .++++||++|.|++++
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKP 165 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTC-EEEECBGGGTBTTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 9999999999987432222 123333333 27899999999999764433 2232 3344 7899999999999999
Q ss_pred HHHHHHhhCCcc
Q psy17091 155 LENILTIELPYK 166 (1250)
Q Consensus 155 ~~~i~~~l~~~~ 166 (1250)
++.+.+.+....
T Consensus 166 ~~~l~~~l~~~~ 177 (221)
T 3gj0_A 166 FLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHhCc
Confidence 999998876543
No 324
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=168.10 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=95.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++. .+.||||||+. ++......++
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 103 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD---------DYDRLRPLFY 103 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC-----------------------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCch---------hhhHHHHHHh
Confidence 4899999999999999999998763 233444555555556667665 78999999975 3334455678
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCcc------------c-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~D~~~~~~------------~-----~~~~-~~~~~ 138 (1250)
..+|++++|+|++++.+.... .|...+.. .+.|+++|+||+|+..... . .++. ..+..
T Consensus 104 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 183 (214)
T 2j1l_A 104 PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAV 183 (214)
T ss_dssp -CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCC
Confidence 899999999999864222221 23444443 3789999999999976531 1 1222 33444
Q ss_pred CcEecccccCCchhHHHHHHHHhhC
Q psy17091 139 NPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
.++++||++|.|++++++.+.+.+.
T Consensus 184 ~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 184 AYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999988664
No 325
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.66 E-value=1.1e-17 Score=178.49 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=105.8
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
+..+||+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||+.+....
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 98 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI----------- 98 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCC-CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH-----------
Confidence 35799999999999999999999986543 33456667777777788877 46888999998655321
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCcEEEEEeccccCCccchH-HHHHHHHHHhccCCCCeEEE
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDIN-IANFIYE---SGRSLIVCVNKWDSIIHNQRK-IIKNNIKKKLNFLSFAMFNF 332 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~~-~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~iv~ 332 (1250)
...+++.+|++++|+|+++..+.+... ++..+.. .++|+++|+||+|+.+..... +..+.+.+.+ ..++++
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~~ 174 (199)
T 3l0i_B 99 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL----GIPFLE 174 (199)
T ss_dssp SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT----TCCBCC
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHc----CCeEEE
Confidence 124568899999999999874433332 3333433 278999999999997543211 1112222222 368999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q psy17091 333 ISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 333 iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
+||++|.|++++|+++.+.+.
T Consensus 175 vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 175 TSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp CCC---HHHHHHHHHHTTTTT
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999976654
No 326
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.66 E-value=9.7e-16 Score=161.30 Aligned_cols=144 Identities=18% Similarity=0.152 Sum_probs=102.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|++++.... ..... |.+.....+.+++. .+.+|||||+... . ++
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~-----~~ 83 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYV--QEESP-EGGRFKKEIVVDGQSYLLLIRDEGGPPEL---------Q-----FA 83 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCC--CCCCT-TCEEEEEEEEETTEEEEEEEEECSSSCCH---------H-----HH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCcCC-CcceEEEEEEECCEEEEEEEEECCCChhh---------h-----ee
Confidence 48999999999999999999987643 22222 34444466777775 5677999997621 1 56
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCC--ccc-----hhHH-hcCCCCcEeccccc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINS--SIS-----LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~--~~~-----~~~~-~~~~~~~~~iSA~~ 147 (1250)
..+|++++|+|.++..+... ..|...+.. .+.|+++|+||+|+... ... .++. ..+...++++||++
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATY 163 (184)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCC
Confidence 78999999999987433222 234444443 36799999999998532 222 2232 33434789999999
Q ss_pred CCchhHHHHHHHHhhC
Q psy17091 148 GNGIKNFLENILTIEL 163 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~ 163 (1250)
|.|++++++.+.+.+.
T Consensus 164 ~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVV 179 (184)
T ss_dssp TBTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987654
No 327
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.66 E-value=9.6e-17 Score=169.59 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=105.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++.... ...| |.......+.+++..+.+|||||+.... .....+++.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------~~~~~~~~~ 89 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVV--TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVR---------PYWRCYFSD 89 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCE--EECS--STTCCEEEEEETTEEEEEEEECCSSSSC---------CCCSSSSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CcCC--CCceEEEEEEECCEEEEEEECCCCHhHH---------HHHHHHhhc
Confidence 58999999999999999999877643 3333 3345556677889999999999986432 123345789
Q ss_pred CCEEEEEEeCCCCCChh--hHHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhHHh------cCCCCcEecccccC
Q psy17091 83 SDIIIFIVDGRQGLVEQ--DKLITNFLRK---SGQPIVLVINKSENINSSIS---LDFYE------LGIGNPHIISALYG 148 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~--~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~~~------~~~~~~~~iSA~~g 148 (1250)
+|++++|+|++++.+.. ...+..++.. .+.|+++|+||+|+.+.... .+... .+. +++++||++|
T Consensus 90 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 168 (189)
T 2x77_A 90 TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW-TIVKSSSKTG 168 (189)
T ss_dssp CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEEECCTTTC
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCce-EEEEccCCCc
Confidence 99999999998753322 2223333332 37899999999999765332 11111 122 5789999999
Q ss_pred CchhHHHHHHHHhhC
Q psy17091 149 NGIKNFLENILTIEL 163 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~ 163 (1250)
.|++++++.+.+.+.
T Consensus 169 ~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 169 DGLVEGMDWLVERLR 183 (189)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988764
No 328
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.47 E-value=7.4e-18 Score=180.63 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=109.8
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
.+.+||+++|.+|||||||+|+|++... .....+|+.+.....+..++. .+.+|||||+.+.. . .
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~-~ 94 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD----------R-L 94 (204)
Confidence 3479999999999999999999997543 334555666655555555555 45589999984432 1 1
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEeccccCCccchH----------HHHHHHHHHhc
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRK----------IIKNNIKKKLN 323 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~----------~~~~~l~~~l~ 323 (1250)
...+++.+|++++|+|++++.+..+. .++..+... ++|+++|+||+|+.+..... ...++......
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 3th5_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 174 (204)
Confidence 22456889999999999987665554 344555444 79999999999997542111 11122222223
Q ss_pred cCCCCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 324 FLSFAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 324 ~~~~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
..+..+++++||++|.|++++++++.+.
T Consensus 175 ~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 175 EIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 3333489999999999999999988654
No 329
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=169.07 Aligned_cols=151 Identities=15% Similarity=0.092 Sum_probs=104.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEE--CCEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI--GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ..+++++.+.......+ .+..+.||||||..... .....++
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~ 93 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS---------ILPYSFI 93 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTC---------CCCGGGT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchH---------HHHHHHH
Confidence 48999999999999999999988743 33334444433444443 34688999999976332 2244567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|+++..+... ..+...+.. .++|+++|+||+|+...... .++. ..+. +++++||++|.
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 172 (201)
T 3oes_A 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA-TFMESSARENQ 172 (201)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECCTTCHH
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC-eEEEEeCCCCC
Confidence 89999999999986322111 122233322 36899999999999755443 2222 3454 78999999999
Q ss_pred chhHHHHHHHHhhCCc
Q psy17091 150 GIKNFLENILTIELPY 165 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~~ 165 (1250)
|++++++.+.+.+...
T Consensus 173 ~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 173 LTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999877543
No 330
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.65 E-value=1.2e-16 Score=171.29 Aligned_cols=152 Identities=20% Similarity=0.151 Sum_probs=77.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcc-eeeeEEEEEECC----EEEEEEecCCCCcchhhHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLT-RDRHYGEGYIGK----KSFIIIDTGGFEPEVKKGIMHEMTKQTK 77 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T-~~~~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~~~~~ 77 (1250)
.+|+++|.+|||||||+|+|++....+...+++++ .+.....+.+++ ..+.+|||||+. .+...+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~ 91 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD---------LYKEQIS 91 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH---------HHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH---------HHHHHHH
Confidence 48999999999999999999988433344444444 466666777774 589999999974 4455667
Q ss_pred HHhhcCCEEEEEEeCCCCCChhh-HHHHHHHHh------cCCCEEEEEeCCCCCC-Cccc-----hhHH-hcCCCCcEec
Q psy17091 78 QAIIESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENIN-SSIS-----LDFY-ELGIGNPHII 143 (1250)
Q Consensus 78 ~~~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~D~~~-~~~~-----~~~~-~~~~~~~~~i 143 (1250)
.++..+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+.+ .... .++. ..+. +++++
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~-~~~~~ 170 (208)
T 2yc2_C 92 QYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTL-DFFDV 170 (208)
T ss_dssp TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTC-EEEEC
T ss_pred HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCC-EEEEe
Confidence 77899999999999987432221 223333433 3789999999999976 3332 2333 3444 78999
Q ss_pred cccc-CCchhHHHHHHHHhhCC
Q psy17091 144 SALY-GNGIKNFLENILTIELP 164 (1250)
Q Consensus 144 SA~~-g~gi~~L~~~i~~~l~~ 164 (1250)
||++ |.|++++++.+.+.+..
T Consensus 171 Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 171 SANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp CC-------CHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHHHH
Confidence 9999 99999999999887653
No 331
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.65 E-value=7.9e-16 Score=166.05 Aligned_cols=146 Identities=19% Similarity=0.241 Sum_probs=100.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC---CEEEEEEecCCCCcchhhHHHHHHHH-HHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG---KKSFIIIDTGGFEPEVKKGIMHEMTK-QTK 77 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~-~~~ 77 (1250)
.++|+++|.+|||||||+|+|++.. ....+++++.+... +.++ +..+.+|||||+. .+.. ...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~ 73 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHE---------SLRFQLLD 73 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCH---------HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEE--EEecCCCccEEEEEECCCCh---------hHHHHHHH
Confidence 3699999999999999999999876 34555665555443 5565 5789999999975 2333 345
Q ss_pred HHhhcCCEEEEEEeCCCCCChhhHHHH----HHHHh-----cCCCEEEEEeCCCCCCCccc---hhH----Hh-------
Q psy17091 78 QAIIESDIIIFIVDGRQGLVEQDKLIT----NFLRK-----SGQPIVLVINKSENINSSIS---LDF----YE------- 134 (1250)
Q Consensus 78 ~~~~~ad~il~v~D~~~~~~~~~~~~~----~~l~~-----~~~p~ilv~NK~D~~~~~~~---~~~----~~------- 134 (1250)
.++..+|++++|+|+++ .......+. .++.. .+.|+++|+||+|+...... .+. ..
T Consensus 74 ~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 152 (214)
T 2fh5_B 74 RFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRS 152 (214)
T ss_dssp HHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccch
Confidence 56899999999999976 222222233 33322 36899999999999765422 000 00
Q ss_pred ---------------cC-------------CCCcEecccccC------CchhHHHHHHHHh
Q psy17091 135 ---------------LG-------------IGNPHIISALYG------NGIKNFLENILTI 161 (1250)
Q Consensus 135 ---------------~~-------------~~~~~~iSA~~g------~gi~~L~~~i~~~ 161 (1250)
.+ ...++++||++| .|++++++++.+.
T Consensus 153 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 153 AAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 00 124689999999 9999999998764
No 332
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=180.94 Aligned_cols=148 Identities=19% Similarity=0.238 Sum_probs=107.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
+|+++|.+|||||||+|+|++... +...| |++.....+.+.+..+.||||||.. .+......++..+
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~--~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~~a 233 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQD---------KIRPLWRHYFQNT 233 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC--EEEEE--ETTEEEEEEEETTEEEEEEECC--------------CCSHHHHHTTE
T ss_pred eEEEECCCCccHHHHHHHHhCCCC--CCccc--ccceEEEEEecCcEEEEEEECCCCH---------hHHHHHHHHhccC
Confidence 899999999999999999998773 34444 6666777788899999999999965 3334456678899
Q ss_pred CEEEEEEeCCCCCChh--hHHHHHHHHh---cCCCEEEEEeCCCCCCCccchhHH-hcCC-------CCcEecccccCCc
Q psy17091 84 DIIIFIVDGRQGLVEQ--DKLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGI-------GNPHIISALYGNG 150 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~--~~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~-~~~~-------~~~~~iSA~~g~g 150 (1250)
|++|+|+|+++..+.. ...+..++.. .++|+++|+||+|+.+.....++. .++. -.++++||++|.|
T Consensus 234 d~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g 313 (329)
T 3o47_A 234 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 313 (329)
T ss_dssp EEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred CEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence 9999999997643322 2334444443 278999999999998654432211 1111 1478999999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.|.+.+..
T Consensus 314 i~el~~~l~~~l~~ 327 (329)
T 3o47_A 314 LYEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 333
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.65 E-value=1.4e-16 Score=170.77 Aligned_cols=160 Identities=15% Similarity=0.151 Sum_probs=106.0
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcchhhHHHHHHHH
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTFEVIEKFSVIK 257 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~e~~~~~~ 257 (1250)
...+||+++|.+|||||||+|+|++.... ..+..|+.+.....+.+++ ..+.+|||||+.+....
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 92 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------- 92 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT-----------
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH-----------
Confidence 34799999999999999999999986542 2233343333334455554 46888999998433211
Q ss_pred HHHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCcEEEEEeccccCCccch----------HHHHHHHHHHhc
Q psy17091 258 TLKSILEANVVILLLDAQQNISAQDI--NIANFIYE--SGRSLIVCVNKWDSIIHNQR----------KIIKNNIKKKLN 323 (1250)
Q Consensus 258 ~~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~----------~~~~~~l~~~l~ 323 (1250)
...+++.+|++++|+|+++..+..+. .++..+.+ .+.|+++|+||+|+.+.... ....++..+...
T Consensus 93 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 172 (205)
T 1gwn_A 93 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK 172 (205)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHH
Confidence 12466899999999999986544443 34444544 37999999999999742100 000111222222
Q ss_pred cCCCCeEEEeecC-CCCChHHHHHHHHHHH
Q psy17091 324 FLSFAMFNFISAI-KLNNINSFMESINHVY 352 (1250)
Q Consensus 324 ~~~~~~iv~iSA~-~g~gv~~l~~~i~~~~ 352 (1250)
..+..+++++||+ +|.|++++|+.+.+.+
T Consensus 173 ~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 173 QIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 2234689999999 6899999999987764
No 334
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.65 E-value=1.9e-16 Score=194.18 Aligned_cols=184 Identities=20% Similarity=0.191 Sum_probs=125.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCccc--------------ccCCCcceeeeEEEEEEC-----CEEEEEEecCCCCcc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV--------------ANYPGLTRDRHYGEGYIG-----KKSFIIIDTGGFEPE 63 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v--------------~~~~~~T~~~~~~~~~~~-----~~~~~liDTpG~~~~ 63 (1250)
++|+|+|++|+|||||+++|+.....+. ....|+|.......+.|. +..+.||||||+.+
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d- 83 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD- 83 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG-
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH-
Confidence 5899999999999999999986332111 113567777766677675 26899999999863
Q ss_pred hhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHH-hcCC--
Q psy17091 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGI-- 137 (1250)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~-~~~~-- 137 (1250)
+...+..++..+|++|+|+|++++...+.......+...++|+++|+||+|+...... .++. .++.
T Consensus 84 --------F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 84 --------FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA 155 (599)
T ss_dssp --------GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC
T ss_pred --------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc
Confidence 3445667788999999999999988887776666666779999999999999765422 2222 2233
Q ss_pred CCcEecccccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeC---CCChhhHHHHHHhCC
Q psy17091 138 GNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGK---PNVGKSTLINSLLGE 205 (1250)
Q Consensus 138 ~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~---~nvGKSSLin~l~~~ 205 (1250)
.+++++||++|.|+++|++.+.+.++..... ...+++..+... +++|+.++++.+.|.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~----------~~~p~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIPPPEGD----------PEGPLQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSCCCCCC----------TTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCCCcccc----------ccCCceeeeeeccccccccEEEEEEEEeCE
Confidence 3589999999999999999999988765321 123445444443 899998888766653
No 335
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.65 E-value=1.8e-16 Score=166.38 Aligned_cols=148 Identities=17% Similarity=0.161 Sum_probs=101.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++.......+..+ .....+.+++..+.+|||||+.... ..+..++..
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~ 85 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLGGQTSIR---------PYWRCYYAD 85 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT----CCEEEEEETTEEEEEEEEC----CC---------TTGGGTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc----cceEEEEECCEEEEEEECCCCHhHH---------HHHHHHhcc
Confidence 489999999999999999999776432233222 3445667788999999999986322 233456789
Q ss_pred CCEEEEEEeCCCCCChhh--HHHHHHHH---hcCCCEEEEEeCCCCCCCccc---hhHHhcC-C----CCcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLVEQD--KLITNFLR---KSGQPIVLVINKSENINSSIS---LDFYELG-I----GNPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~--~~~~~~l~---~~~~p~ilv~NK~D~~~~~~~---~~~~~~~-~----~~~~~iSA~~g~ 149 (1250)
+|++++|+|++++.+... ..+..+++ ..+.|+++|+||+|+.+.... .+..... . .+++++||++|.
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 86 TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 999999999987533222 22223332 246899999999999764332 2222111 1 157899999999
Q ss_pred chhHHHHHHHHhhC
Q psy17091 150 GIKNFLENILTIEL 163 (1250)
Q Consensus 150 gi~~L~~~i~~~l~ 163 (1250)
|++++++++.+.+.
T Consensus 166 gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 166 GITEGLDWLIDVIK 179 (183)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987664
No 336
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.65 E-value=4.3e-16 Score=166.48 Aligned_cols=149 Identities=18% Similarity=0.165 Sum_probs=105.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....|+++.+.. ..+.+++. .+.+|||||+... ......++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~~~~ 94 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDY---------DRLRPLSY 94 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGG---------TTTGGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEE-EEEEECCEEEEEEEEECCCchhH---------HHHHHHhc
Confidence 48999999999999999999987643 233444444443 34566664 7899999997532 22334467
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHhc--CCCEEEEEeCCCCCCCcc------------c-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~D~~~~~~------------~-----~~~~-~~~~~ 138 (1250)
..+|++++|+|+++..+... ..+...++.. +.|+++|+||+|+..... . .++. ..+..
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (201)
T 2gco_A 95 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF 174 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCc
Confidence 89999999999986322222 2355555554 789999999999976421 1 1122 33444
Q ss_pred CcEecccccCCchhHHHHHHHHhh
Q psy17091 139 NPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
.++++||++|.|++++++.+.+.+
T Consensus 175 ~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 175 GYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998754
No 337
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.65 E-value=3.1e-16 Score=169.45 Aligned_cols=152 Identities=16% Similarity=0.080 Sum_probs=106.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++ ..+.||||||.... ......++
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~~~~ 96 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY---------DNVRPLCY 96 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG---------TTTGGGGC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH---------HHHHHHHc
Confidence 5899999999999999999998763 23333333333333444443 58899999997632 23345568
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHhc--CCCEEEEEeCCCCCCC------------ccc-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINS------------SIS-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~D~~~~------------~~~-----~~~~-~~~~~ 138 (1250)
..+|++|+|+|+++..+... ..|...++.. +.|+++|+||+|+.+. ... .++. ..+..
T Consensus 97 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 176 (214)
T 3q3j_B 97 SDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE 176 (214)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence 89999999999987433322 2344555543 7899999999999753 112 2222 44555
Q ss_pred CcEecccccCCc-hhHHHHHHHHhhCCc
Q psy17091 139 NPHIISALYGNG-IKNFLENILTIELPY 165 (1250)
Q Consensus 139 ~~~~iSA~~g~g-i~~L~~~i~~~l~~~ 165 (1250)
.++++||++|.| ++++++.+.+.+...
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 789999999998 999999999876543
No 338
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=3.2e-16 Score=168.36 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=104.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ..+.+++.+.....+.+++ ..+.+|||||+.... .....++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~ 94 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD---------RLRPLSY 94 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCT---------TTGGGGC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH---------HHHHhhc
Confidence 48999999999999999999987643 2233333333334456666 478999999986332 2334467
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHhc--CCCEEEEEeCCCCCCCcc------------c-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~D~~~~~~------------~-----~~~~-~~~~~ 138 (1250)
..+|++++|+|+++..+... ..+...++.. +.|+++|+||+|+..... . .++. ..+..
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (207)
T 2fv8_A 95 PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAY 174 (207)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCC
Confidence 89999999999986322222 2355555553 789999999999976421 1 1111 23333
Q ss_pred CcEecccccCCchhHHHHHHHHhhCC
Q psy17091 139 NPHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
.++++||++|.|++++++.+.+.+..
T Consensus 175 ~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 175 DYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999887643
No 339
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.65 E-value=6.9e-17 Score=169.26 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=97.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|++++... ...+++++.+.....+..++ ..+.+|||||+... ......++
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 77 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY---------NRLRPLSY 77 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTT---------TTTGGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhh---------hhhHHhhc
Confidence 5899999999999999999998763 33444444433332333344 45669999997632 23344567
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHh--cCCCEEEEEeCCCCCCCcc-----------c----hhHH-hcCCCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRK--SGQPIVLVINKSENINSSI-----------S----LDFY-ELGIGNP 140 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~--~~~p~ilv~NK~D~~~~~~-----------~----~~~~-~~~~~~~ 140 (1250)
+.+|++++|+|++++.+.... .+...++. .+.|+++|+||+|+.+... . .++. ..+..++
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 157 (182)
T 3bwd_D 78 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAY 157 (182)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEE
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEE
Confidence 899999999999874332221 24455554 3789999999999865432 1 2222 3454478
Q ss_pred EecccccCCchhHHHHHHHHhhC
Q psy17091 141 HIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 141 ~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
+++||++|.|++++++.+.+.+.
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987654
No 340
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.65 E-value=7.3e-16 Score=178.94 Aligned_cols=160 Identities=26% Similarity=0.287 Sum_probs=109.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
+.|+++|.+|||||||+|+|++... .+.+.+++|+|...+.+.+++..+.+|||||+.......+.+.+ ..+...+..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~ 257 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKY 257 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHh
Confidence 4599999999999999999998874 57889999999999999999999999999998543222333344 334557899
Q ss_pred CCEEEEEEeCCCCCChhh---HHHHHHHHh---cCCCEEEEEeCCCCCCCccc---hhH----Hhc-C-CCCcEeccccc
Q psy17091 83 SDIIIFIVDGRQGLVEQD---KLITNFLRK---SGQPIVLVINKSENINSSIS---LDF----YEL-G-IGNPHIISALY 147 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~---~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~---~~~----~~~-~-~~~~~~iSA~~ 147 (1250)
+|++++|+|++++....+ ..+.++++. .++|+++|.||+|+...... ... ..+ . ..+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 999999999987531122 223445554 46899999999998764311 111 122 1 11468999999
Q ss_pred CCchhHHHHHHHHhhCC
Q psy17091 148 GNGIKNFLENILTIELP 164 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~ 164 (1250)
|.|+++|++.+.+.+..
T Consensus 338 g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcc
Confidence 99999999999886654
No 341
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.65 E-value=2.5e-16 Score=188.48 Aligned_cols=155 Identities=25% Similarity=0.269 Sum_probs=110.8
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCccee------------------------------ccCCCCcceeeEEEEEEEcCe
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI------------------------------TYDTPGTTRDSIKSLFEYNNK 230 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~------------------------------~~~~~gtT~~~~~~~~~~~~~ 230 (1250)
+.++|+++|++|+|||||+|+|++....+ ....+|+|.+.....+.+++.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 46899999999999999999998541111 011578899888778888899
Q ss_pred eEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCC-------CCHHHHHHHHHHHHcCC-cEEEEEec
Q psy17091 231 KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN-------ISAQDINIANFIYESGR-SLIVCVNK 302 (1250)
Q Consensus 231 ~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~-------~~~~d~~~~~~~~~~~~-p~iiv~NK 302 (1250)
.+.+|||||+.+. . .....+++.+|++++|+|++++ +..+..+.+..+...+. |+++|+||
T Consensus 85 ~~~iiDtpG~~~f----------~-~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK 153 (435)
T 1jny_A 85 FFTIIDAPGHRDF----------V-KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 153 (435)
T ss_dssp EEEECCCSSSTTH----------H-HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred EEEEEECCCcHHH----------H-HHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence 9999999999543 2 2345678999999999999997 55677778877777786 59999999
Q ss_pred cccCCc----cchHHHHHHHHHHhccCC----CCeEEEeecCCCCChHHHHH
Q psy17091 303 WDSIIH----NQRKIIKNNIKKKLNFLS----FAMFNFISAIKLNNINSFME 346 (1250)
Q Consensus 303 ~Dl~~~----~~~~~~~~~l~~~l~~~~----~~~iv~iSA~~g~gv~~l~~ 346 (1250)
+|+.+. ...+...+++++.+...+ ..+++++||++|.|+.++++
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 999862 223445566666654443 36899999999999987754
No 342
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.65 E-value=5.2e-17 Score=180.05 Aligned_cols=143 Identities=22% Similarity=0.288 Sum_probs=103.1
Q ss_pred HHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHH-hcCCCCcEecccccC
Q psy17091 73 TKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 73 ~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~-~~~~~~~~~iSA~~g 148 (1250)
.+++...+.++|+|++|+|++.+.......+. ++ ++|.++|+||+|+.+.... .+++ ..|. ++ ++||+++
T Consensus 12 ~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~-~v-~iSa~~~ 85 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFFKKQGK-RV-ITTHKGE 85 (262)
T ss_dssp THHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC-CE-EECCTTS
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHHHHcCC-eE-EEECCCC
Confidence 45677788999999999999987666544443 44 8999999999999875432 3444 3455 45 9999999
Q ss_pred CchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc
Q psy17091 149 NGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN 228 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~ 228 (1250)
.|+++|++.+...+ ++++++|.||||||||+|+|.+.....+++.||+|+...... -
T Consensus 86 ~gi~~L~~~l~~~~--------------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~ 142 (262)
T 3cnl_A 86 PRKVLLKKLSFDRL--------------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS---L 142 (262)
T ss_dssp CHHHHHHHHCCCTT--------------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE---C
T ss_pred cCHHHHHHHHHHhh--------------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE---e
Confidence 99999887652110 689999999999999999999988878889999999874322 2
Q ss_pred CeeEEEEecCCCCCCC
Q psy17091 229 NKKYILIDTAGIRRRN 244 (1250)
Q Consensus 229 ~~~~~liDTpG~~~~~ 244 (1250)
+..+.+|||||+....
T Consensus 143 ~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 143 ENGVKILDTPGILYKN 158 (262)
T ss_dssp TTSCEEESSCEECCCC
T ss_pred CCCEEEEECCCcccCc
Confidence 5688999999998764
No 343
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.65 E-value=1.6e-16 Score=172.09 Aligned_cols=154 Identities=19% Similarity=0.102 Sum_probs=101.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC-C--EEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG-K--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
.+|+++|.+|||||||+|+|++.... ....+.++........... + ..+.+|||||+.... .....+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~ 81 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA---------VLKDVY 81 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS---------CCCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc---------hHHHHH
Confidence 58999999999999999999977632 1112222222222222222 2 679999999975322 223345
Q ss_pred hhcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHHhcCCCCcEecccccCCc
Q psy17091 80 IIESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFYELGIGNPHIISALYGNG 150 (1250)
Q Consensus 80 ~~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~~~~~~~~~~iSA~~g~g 150 (1250)
+..+|++|+|+|++++.+..+ ..+...+.. .+.|+++|+||+|+.+.... .++......+++++||++|.|
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 788999999999987533322 223333332 36899999999999765443 222222223689999999999
Q ss_pred hhHHHHHHHHhhCCcc
Q psy17091 151 IKNFLENILTIELPYK 166 (1250)
Q Consensus 151 i~~L~~~i~~~l~~~~ 166 (1250)
++++++.+.+.+....
T Consensus 162 v~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 162 FGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998876543
No 344
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.65 E-value=4.9e-16 Score=174.52 Aligned_cols=159 Identities=17% Similarity=0.147 Sum_probs=99.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCccccc-------CCCcceeeeEEEEEECC--EEEEEEecCCCCcch-----hhHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN-------YPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEV-----KKGI 68 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~-------~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~-----~~~~ 68 (1250)
.+|+++|.+|||||||+|+|++........ .++++.+.....+.+++ ..+.||||||+.+.. ...+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 589999999999999999999887654433 45556666555555555 389999999985321 1233
Q ss_pred HHHHHHHHHHHhhc-------------CCEEEEEEeCCC-CCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-----
Q psy17091 69 MHEMTKQTKQAIIE-------------SDIIIFIVDGRQ-GLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS----- 129 (1250)
Q Consensus 69 ~~~~~~~~~~~~~~-------------ad~il~v~D~~~-~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~----- 129 (1250)
..-+..+...++.+ +|+++++++.+. ++...+..+.+.+.. ++|+++|+||+|+......
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~ 167 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKK 167 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHH
Confidence 33344444555554 788888886654 778888888888877 8999999999998754433
Q ss_pred --hhHH-hcCCCCcEecccccCCchhHHHHHHHHhhC
Q psy17091 130 --LDFY-ELGIGNPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 130 --~~~~-~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
.+.. ..+. +++++||+++.|++++++.+.+.++
T Consensus 168 ~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 168 QIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHTTC-CCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCCC
Confidence 1111 3344 6789999999999999999987654
No 345
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.65 E-value=1.2e-15 Score=177.86 Aligned_cols=160 Identities=30% Similarity=0.350 Sum_probs=116.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHH-HHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMT-KQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~-~~~~~~~~ 81 (1250)
++|+++|.+|||||||+|+|++... .+...+++|++.....+...+..+.+|||||+......... .+. ..+.....
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-~~~~~~~~~~~~ 245 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERN-EIEKQAILALRY 245 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSC-HHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhh-HHHHHHHHHHHh
Confidence 5899999999999999999998874 47788999999988888888899999999998643211111 111 22223345
Q ss_pred cCCEEEEEEeCCCCC--Chhh-HHHHHHHHh-c-CCCEEEEEeCCCCCCCccc---hhHHhcCCCCcEecccccCCchhH
Q psy17091 82 ESDIIIFIVDGRQGL--VEQD-KLITNFLRK-S-GQPIVLVINKSENINSSIS---LDFYELGIGNPHIISALYGNGIKN 153 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~--~~~~-~~~~~~l~~-~-~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~~iSA~~g~gi~~ 153 (1250)
.+|++++|+|++... .... ..+...+.. . ++|+++|+||+|+...... .++......+++++||++|.|+++
T Consensus 246 ~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~ 325 (357)
T 2e87_A 246 LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDL 325 (357)
T ss_dssp TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHH
T ss_pred cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHH
Confidence 699999999987643 2222 334444443 3 7999999999999765433 222222233789999999999999
Q ss_pred HHHHHHHhhCC
Q psy17091 154 FLENILTIELP 164 (1250)
Q Consensus 154 L~~~i~~~l~~ 164 (1250)
+++++.+.+..
T Consensus 326 l~~~i~~~l~~ 336 (357)
T 2e87_A 326 VKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987743
No 346
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.3e-15 Score=162.20 Aligned_cols=151 Identities=20% Similarity=0.202 Sum_probs=103.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....+.+. .........++ ..+.+|||||+... ......++
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 77 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFR-DTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQF---------PAMQRLSI 77 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC-CTTSCCCC-EEEEEEEEETTEEEEEEEEECCGGGSC---------HHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC-CcccCccc-cceeEEEEECCEEEEEEEEeCCChHHh---------HHHHHHhh
Confidence 48999999999999999999987642 12223222 22223344454 47899999997532 23445567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCCEEEEEeCCCCCCCccc----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSIS----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+...... .++. ..+. .++++||++|.
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (199)
T 2gf0_A 78 SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKC-AFMETSAKMNY 156 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCC-eEEEEecCCCC
Confidence 88999999999986322111 223333433 36799999999999764322 2222 3454 68999999999
Q ss_pred chhHHHHHHHHhhCCc
Q psy17091 150 GIKNFLENILTIELPY 165 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~~ 165 (1250)
|++++++++.+.+...
T Consensus 157 gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 157 NVKELFQELLTLETRR 172 (199)
T ss_dssp SHHHHHHHHHHHCSSS
T ss_pred CHHHHHHHHHHHHhhh
Confidence 9999999999877544
No 347
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.64 E-value=5.5e-16 Score=163.65 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=102.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ...+.+++.+.......+++ ..+.||||||+.... . ...++
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~----~~~~~ 89 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR------N----CERYL 89 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC------C----THHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcch------h----HHHHH
Confidence 4899999999999999999998762 34555555555445556665 478899999976332 1 12467
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh------cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEeccc-c
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK------SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISA-L 146 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~------~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA-~ 146 (1250)
..+|++++|+|.++..+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. .++++|| +
T Consensus 90 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~ 168 (187)
T 3c5c_A 90 NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGC-LFFEVSACL 168 (187)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECCSSS
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCC-cEEEEeecC
Confidence 89999999999986322221 123333332 37899999999999654333 2222 4455 7899999 8
Q ss_pred cCCchhHHHHHHHHhh
Q psy17091 147 YGNGIKNFLENILTIE 162 (1250)
Q Consensus 147 ~g~gi~~L~~~i~~~l 162 (1250)
+|.|++++++.+.+.+
T Consensus 169 ~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 169 DFEHVQHVFHEAVREA 184 (187)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999998765
No 348
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=1.1e-15 Score=162.39 Aligned_cols=148 Identities=23% Similarity=0.192 Sum_probs=104.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ..+.+++.+.....+.+++ ..+.+|||||+.. ......++
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~ 96 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED----------TIQREGHM 96 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----------CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----------ccchhhhh
Confidence 48999999999999999999987642 2333333333444456665 4689999999874 12345567
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh----cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK----SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~----~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~ 149 (1250)
..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~g~ 175 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC-AFYECSACTGE 175 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-EEEECCTTTCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCC-eEEEECCCcCC
Confidence 89999999999986322211 223333332 47899999999999764332 2222 3344 78999999999
Q ss_pred -chhHHHHHHHHhhC
Q psy17091 150 -GIKNFLENILTIEL 163 (1250)
Q Consensus 150 -gi~~L~~~i~~~l~ 163 (1250)
|++++++.+.+.+.
T Consensus 176 ~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 176 GNITEIFYELCREVR 190 (196)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 99999999987664
No 349
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.64 E-value=1e-15 Score=174.67 Aligned_cols=158 Identities=19% Similarity=0.225 Sum_probs=118.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEE-CCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.||+++|.+|||||||+|+|+++....+.+.+++|++.......+ ++..+.+|||||++.. ....+......+++
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF----MENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH----HHHHHTTTHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH----hhhhhhhHHHHHhc
Confidence 589999999999999999999987667788999999999888876 5689999999997522 11111345667788
Q ss_pred cCCEEEEEEeCCCCCChhhH-HHHHHHHh-----cCCCEEEEEeCCCCCC--Ccc----c-----hhHH-hcCC--CCcE
Q psy17091 82 ESDIIIFIVDGRQGLVEQDK-LITNFLRK-----SGQPIVLVINKSENIN--SSI----S-----LDFY-ELGI--GNPH 141 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~-~~~~~l~~-----~~~p~ilv~NK~D~~~--~~~----~-----~~~~-~~~~--~~~~ 141 (1250)
++|++|+|+|+++..+..+. .+.+++.. .+.|+++|+||+|+.. ... . .++. .+|+ .+++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 99999999999886544432 34444443 2789999999999976 221 1 1222 3343 4779
Q ss_pred ecccccCCchhHHHHHHHHhhCCc
Q psy17091 142 IISALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 142 ~iSA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
++||++ .|+.+++..+...+.+.
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred EeeecC-ChHHHHHHHHHHHHcCC
Confidence 999999 89999998888766543
No 350
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.64 E-value=5.4e-16 Score=192.46 Aligned_cols=226 Identities=13% Similarity=0.160 Sum_probs=137.1
Q ss_pred cEecccccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCC------
Q psy17091 140 PHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDT------ 213 (1250)
Q Consensus 140 ~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~------ 213 (1250)
+...++-.+.|+++++..+.+....-..... . ......+|+++|.+|+|||||+|+|+|......+..
T Consensus 15 ~~~~~~~~~~~~~~li~~inkl~d~l~~lg~---~---~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~P 88 (772)
T 3zvr_A 15 VPRGSHMGNRGMEDLIPLVNRLQDAFSAIGQ---N---ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 88 (772)
T ss_dssp ----------CGGGHHHHHHHHHHHHHTTTC---C---GGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSC
T ss_pred CCcccccccccHHHHHHHHHHHHHHHHhcCc---c---ccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccc
Confidence 3456777888888877766543221110000 0 012357999999999999999999999765322211
Q ss_pred --------------------------------------------CCcceeeEEEEEEEc-CeeEEEEecCCCCCCCc---
Q psy17091 214 --------------------------------------------PGTTRDSIKSLFEYN-NKKYILIDTAGIRRRNK--- 245 (1250)
Q Consensus 214 --------------------------------------------~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~--- 245 (1250)
.+++.+.+...+... ..+++||||||+.....
T Consensus 89 l~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~q 168 (772)
T 3zvr_A 89 LVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQ 168 (772)
T ss_dssp EEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCC
T ss_pred eEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCC
Confidence 122233333333333 34789999999976321
Q ss_pred chhhHHHHHHHHHHHhh-ccCcEEEEEecCCCCCCHHHH-HHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHH-Hh
Q psy17091 246 TFEVIEKFSVIKTLKSI-LEANVVILLLDAQQNISAQDI-NIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK-KL 322 (1250)
Q Consensus 246 ~~~~~e~~~~~~~~~~~-~~ad~vllviD~~~~~~~~d~-~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~-~l 322 (1250)
..+..+.+. .....++ ..+|++++|+|++.+++.++. .++..+...++|+++|+||+|++++...... .+.. .+
T Consensus 169 p~di~~~i~-~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~--il~~~~~ 245 (772)
T 3zvr_A 169 PPDIEFQIR-DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARD--VLENKLL 245 (772)
T ss_dssp CCHHHHHHH-HHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHH--HHTTCSS
T ss_pred cHHHHHHHH-HHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHH--HHHHHhh
Confidence 111112221 1122333 688999999999998888887 7888888889999999999999865432111 1111 11
Q ss_pred c-cCCCCeEEEeecCCCCChHHHHHHHHHH---------HhhcccccChhHHHHHHHHHHHc
Q psy17091 323 N-FLSFAMFNFISAIKLNNINSFMESINHV---------YDSSIIHLSTSRITRALISAIKN 374 (1250)
Q Consensus 323 ~-~~~~~~iv~iSA~~g~gv~~l~~~i~~~---------~~~~~~~~~~~~l~~~l~~~~~~ 374 (1250)
. ..++.+++++||++|.|+++|++.+.+. +.....+..+..+++++++.+..
T Consensus 246 ~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~ 307 (772)
T 3zvr_A 246 PLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTN 307 (772)
T ss_dssp CCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHH
T ss_pred hhhccCCceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHH
Confidence 1 1245689999999999999999999762 33333556667777777766553
No 351
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.64 E-value=2e-16 Score=170.51 Aligned_cols=153 Identities=19% Similarity=0.149 Sum_probs=109.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... ...+++++.+.....+.+++ ..+.+|||||+.... .....++
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~ 78 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS---------RLRPLSY 78 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCC---------C--CGGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHH---------HHHHhhc
Confidence 4899999999999999999998763 34445555555555555665 489999999986432 2234568
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHhc--CCCEEEEEeCCCCCCCcc----------c---hhHH-hcCCCCcEe
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRKS--GQPIVLVINKSENINSSI----------S---LDFY-ELGIGNPHI 142 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~~--~~p~ilv~NK~D~~~~~~----------~---~~~~-~~~~~~~~~ 142 (1250)
..+|++|+|+|.+++.+... ..|...++.. +.|+++|+||+|+.+... . .++. .++..++++
T Consensus 79 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (212)
T 2j0v_A 79 RGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIE 158 (212)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEE
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEE
Confidence 89999999999987432222 1344555543 789999999999865432 1 2222 345457899
Q ss_pred cccccCCchhHHHHHHHHhhCCcc
Q psy17091 143 ISALYGNGIKNFLENILTIELPYK 166 (1250)
Q Consensus 143 iSA~~g~gi~~L~~~i~~~l~~~~ 166 (1250)
+||++|.|++++++.+.+.+....
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 159 CSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred ccCCCCCCHHHHHHHHHHHHhhhh
Confidence 999999999999999998776543
No 352
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.64 E-value=1.4e-17 Score=200.94 Aligned_cols=188 Identities=19% Similarity=0.273 Sum_probs=137.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEE-CCEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.|+|+++|++|+|||||+|+|++.+.. ....+++|.+.....+.+ ++..++||||||+.... .....++
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~---------~~~~~~~ 73 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS---------AMRARGT 73 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT---------TSBBSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH---------HHHHHHH
Confidence 479999999999999999999987654 446789999988777666 56789999999986432 3334457
Q ss_pred hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHHhcCC--------CCcEecccccCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYELGI--------GNPHIISALYGN 149 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~~~~~--------~~~~~iSA~~g~ 149 (1250)
..+|++|+|+|++++..++..+.+.++...+.|+++|+||+|+.+.... .+....+. .+++++||++|.
T Consensus 74 ~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~ 153 (537)
T 3izy_P 74 QVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGE 153 (537)
T ss_dssp BSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSC
T ss_pred ccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCC
Confidence 8899999999999999998888888888889999999999998754322 22222211 156899999999
Q ss_pred chhHHHHHHHHhhCCcccccc-cccc-------cccccceeeEEEEEeCCCChhhHHH
Q psy17091 150 GIKNFLENILTIELPYKKFFK-KKEF-------TNIHSIEYIKVAIVGKPNVGKSTLI 199 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~~~~~~~-~~~~-------~~~~~~~~~~i~ivG~~nvGKSSLi 199 (1250)
|+++|++.+...+........ +.+. ..+.....+..++++..+.+|++.+
T Consensus 154 GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 154 NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 999999999876542211000 0000 0001123577788888888777653
No 353
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.64 E-value=5.3e-16 Score=196.61 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=108.6
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcc----------e-----eccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENR----------V-----ITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~----------~-----~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
.+.++|+++|++|+|||||+++|++... . .....+|+|.+.....+..++..+.+|||||+
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH---- 369 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH---- 369 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH----
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh----
Confidence 3469999999999999999999986310 0 11235788888766667777889999999999
Q ss_pred cchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc-EEEEEeccccCCccc-hHHHHHHHHHHh
Q psy17091 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS-LIVCVNKWDSIIHNQ-RKIIKNNIKKKL 322 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~-~~~~~~~l~~~l 322 (1250)
+.|. .....+++.+|++|+|+|++++..++..+.+..+...++| +|+|+||+|+.+... .+...+++.+.+
T Consensus 370 ------edF~-~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 370 ------ADYV-KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp ------HHHH-HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred ------HHHH-HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 4443 3345678999999999999999999999988888888999 789999999985322 233444555554
Q ss_pred ccCC----CCeEEEeecCCCC
Q psy17091 323 NFLS----FAMFNFISAIKLN 339 (1250)
Q Consensus 323 ~~~~----~~~iv~iSA~~g~ 339 (1250)
...+ ..|++++||++|.
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTT
T ss_pred HhccccccceeEEEEEeccCC
Confidence 4333 3699999999993
No 354
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.64 E-value=6.2e-16 Score=187.76 Aligned_cols=117 Identities=19% Similarity=0.281 Sum_probs=97.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcc---------------cc------cCCCcceeeeEEEEEECCEEEEEEecCCC
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDAL---------------VA------NYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~---------------v~------~~~~~T~~~~~~~~~~~~~~~~liDTpG~ 60 (1250)
.++|+|+|++|||||||+|+|+....++ +. ..+|+|.......+.+++..+.||||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 3689999999999999999997322111 11 23678888888889999999999999998
Q ss_pred CcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCc
Q psy17091 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS 127 (1250)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~ 127 (1250)
.+. ...+..++..+|++|+|+|++++.......+...+...++|+++|+||+|+....
T Consensus 93 ~df---------~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 93 ADF---------TEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp TTC---------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC
T ss_pred hhH---------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 743 3457778999999999999999988888888888888899999999999996543
No 355
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.64 E-value=5.8e-16 Score=186.96 Aligned_cols=152 Identities=22% Similarity=0.249 Sum_probs=116.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCC------cccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRD------ALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQT 76 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~------~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 76 (1250)
++|+++|++|+|||||+|+|++... ......+|+|.+.....+.+++..+.+|||||+. .+...+
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~---------~~~~~~ 90 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA---------DLIRAV 90 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH---------HHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH---------HHHHHH
Confidence 4899999999999999999998761 2245667899998888888899999999999963 566777
Q ss_pred HHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-------hhHH-hc-CC--CCcEeccc
Q psy17091 77 KQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFY-EL-GI--GNPHIISA 145 (1250)
Q Consensus 77 ~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-------~~~~-~~-~~--~~~~~iSA 145 (1250)
...+..+|++|+|+|++++...+..+...+++..+.|+++|+||+|+.+.+.. .+++ .. ++ .+++++||
T Consensus 91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp HHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred HHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 88899999999999999988888888888888889999999999999864321 1222 22 22 36899999
Q ss_pred ccCCchhHHHHHHHHhhC
Q psy17091 146 LYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 146 ~~g~gi~~L~~~i~~~l~ 163 (1250)
++|.|+++|++.+.+.++
T Consensus 171 ~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 171 KTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhc
Confidence 999999999999998764
No 356
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.64 E-value=5e-16 Score=165.25 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=102.3
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEE---CCEEEEEEecCCCCcchhhHHHHHHHHHH--
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI---GKKSFIIIDTGGFEPEVKKGIMHEMTKQT-- 76 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~-- 76 (1250)
..+|+++|.+|||||||+|++.++.... ...+++.........+ ....+.+|||||.+... ...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~ 88 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF---------DPTFD 88 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT---------CTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHH---------hhhhh
Confidence 4699999999999999999999864332 2222222222222222 23689999999986422 112
Q ss_pred -HHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHh-----cCCCEEEEEeCCCCCCCcc-------c-----hhHHhc---
Q psy17091 77 -KQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK-----SGQPIVLVINKSENINSSI-------S-----LDFYEL--- 135 (1250)
Q Consensus 77 -~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~-------~-----~~~~~~--- 135 (1250)
..+++++|++|+|+|++++.......+..|+.. .+.|+++|+||+|+..... . .++...
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 456789999999999998644555666677765 3789999999999865321 1 112221
Q ss_pred -CCCCcEecccccCCchhHHHHHHHHhh
Q psy17091 136 -GIGNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 136 -~~~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
....++++||++ .|++++++.+.+.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 112678999999 99999999998754
No 357
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.64 E-value=7.2e-16 Score=178.30 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=115.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEE--EEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYI--LIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~--liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..++|+++|.+|||||||+|++.+... ...+.+|+.+.....+..++..+. +|||||+.+... ..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~ 220 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-----------LR 220 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT-----------TG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH-----------HH
Confidence 469999999999999999999996542 445677888877777777777655 899999844321 12
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCcEEEEEeccccCCccchHHH----------HHHHHHHhcc
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI--NIANFIYES--GRSLIVCVNKWDSIIHNQRKII----------KNNIKKKLNF 324 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~--~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~----------~~~l~~~l~~ 324 (1250)
..+++.+|++++|+|++++.+..+. .++..+... ++|+++|+||+|+.+.....+. .++..+....
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 300 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 300 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHH
Confidence 2467899999999999987555554 244555544 8999999999999754211110 1122222222
Q ss_pred CCCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 325 LSFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 325 ~~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
.+..+++++||++|.|++++++.+.+.+.
T Consensus 301 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 301 IGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 33458999999999999999999977653
No 358
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.64 E-value=2.2e-17 Score=176.22 Aligned_cols=150 Identities=20% Similarity=0.132 Sum_probs=102.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....+++|.+.....+.+++ ..+.||||||..... .....++
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~ 103 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR---------TITSSYY 103 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCC-CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC---------CCSCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH---------HHHHHHh
Confidence 48999999999999999999987643 44556777788888888887 479999999976332 2233457
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+.+.... .++. ..+. +++++||++|.|
T Consensus 104 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSA~~g~g 182 (199)
T 3l0i_B 104 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLETSAKNATN 182 (199)
T ss_dssp CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTC-CBCCCCC---HH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCC-eEEEEECCCCCC
Confidence 89999999999987432221 223333333 26899999999999754432 2333 3344 789999999999
Q ss_pred hhHHHHHHHHhhC
Q psy17091 151 IKNFLENILTIEL 163 (1250)
Q Consensus 151 i~~L~~~i~~~l~ 163 (1250)
++++++.+.+.+.
T Consensus 183 v~~l~~~l~~~l~ 195 (199)
T 3l0i_B 183 VEQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986554
No 359
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.63 E-value=9.9e-17 Score=180.58 Aligned_cols=106 Identities=8% Similarity=0.172 Sum_probs=98.7
Q ss_pred Hhhhccccccc--cchhhhhhhHhhhcCcEEEeeeeeecCHHHHHhHhhhccCCcChHHHHHHHhcCCEEEEEEccccHH
Q psy17091 423 YRTFSLIDALE--KNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLVNFMISGPVFIQVLEGEDAI 500 (1250)
Q Consensus 423 r~t~~li~~~~--~~~vg~Ii~~i~~~g~~i~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~~~l~g~nav 500 (1250)
++||.++++.. ++++|+|+.+|+++||+|+++||+++++++|++||++|+ +.|++||+|||+|||+|+|+|||
T Consensus 236 erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~~av 310 (352)
T 3bh7_B 236 ESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGDGAV 310 (352)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEESTTHH
T ss_pred cceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECcCHH
Confidence 57999996655 666999999999999999999999999999999999999 77999999999999999999999
Q ss_pred HHHHhhhCCCCccccccCCccchhhcchhhhhhhhcCChhHHHHHHHHHH
Q psy17091 501 KKHRILIGDTDPIKAAKGTIRADFAESIDKNIVHELGEMPFRAKQLQKWI 550 (1250)
Q Consensus 501 ~~~r~l~G~~~~~~a~p~siR~~~g~~~~~n~~~~~g~~~~ra~qi~~w~ 550 (1250)
+.||+++|+|+| .|++|+++.+...+++|--|.
T Consensus 311 ~~~R~l~g~t~p-----------------gN~vHgSds~esA~~Ei~~fF 343 (352)
T 3bh7_B 311 EVCQLIVNEIFN-----------------GTKMFVSESKETASGDVDSFY 343 (352)
T ss_dssp HHHHHHHHHHCT-----------------TSCEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCC-----------------CceEEecCCHHHHHHHHHHhc
Confidence 999999999996 199999999999999998886
No 360
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=165.76 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=111.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCC--CcceeeeEEEEEECCEEEEEEecCCCCcch--hhHHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYP--GLTRDRHYGEGYIGKKSFIIIDTGGFEPEV--KKGIMHEMTKQTKQ 78 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~--~~T~~~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~ 78 (1250)
++|+++|++|||||||+|+|++.... ....+ ++|+++....+.+++..+.||||||+.+.. ...+.+++...+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999998764 44555 789999999999999999999999987532 23345567777777
Q ss_pred HhhcCCEEEEEEeCCCCCChhhHHHHHHHHh-----cCCCEEEEEeCCCCCCCccc-----------hhHH-hcCCCCcE
Q psy17091 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLRK-----SGQPIVLVINKSENINSSIS-----------LDFY-ELGIGNPH 141 (1250)
Q Consensus 79 ~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~-----------~~~~-~~~~~~~~ 141 (1250)
+.+.+|++|+|+|++. .+..+..+..++.+ ..+|+++|+||+|+...... .++. ..+. .++
T Consensus 109 ~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-~~~ 186 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-RYC 186 (239)
T ss_dssp TTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS-SEE
T ss_pred cCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC-EEE
Confidence 7889999999999874 45555555444432 34699999999998654332 1122 2333 456
Q ss_pred ecccc-----cCCchhHHHHHHHHhhCC
Q psy17091 142 IISAL-----YGNGIKNFLENILTIELP 164 (1250)
Q Consensus 142 ~iSA~-----~g~gi~~L~~~i~~~l~~ 164 (1250)
++++. ...|+.+|++.+...+.+
T Consensus 187 ~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 187 ALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 66554 347999999998877654
No 361
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=9e-17 Score=188.61 Aligned_cols=154 Identities=21% Similarity=0.175 Sum_probs=89.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEE---------------------c---CeeEEEEecC
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY---------------------N---NKKYILIDTA 238 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~---------------------~---~~~~~liDTp 238 (1250)
++|+|+|.||||||||+|+|++.. ..++++|+||++...+...+ + ..++.+||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999987 77789999999887765332 2 2579999999
Q ss_pred CCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCC----------------------------------------
Q psy17091 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI---------------------------------------- 278 (1250)
Q Consensus 239 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~---------------------------------------- 278 (1250)
|+.+..... +......+.+++.+|++++|+|++++.
T Consensus 80 G~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k 155 (397)
T 1wxq_A 80 GLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAK 155 (397)
T ss_dssp -------------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHS
T ss_pred Ccccchhhh----hhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 996532111 111123346789999999999998751
Q ss_pred -------------------------------------------CHHH-HHHHHHHHHcCCcEEEEEeccccCCccchHHH
Q psy17091 279 -------------------------------------------SAQD-INIANFIYESGRSLIVCVNKWDSIIHNQRKII 314 (1250)
Q Consensus 279 -------------------------------------------~~~d-~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~ 314 (1250)
++.+ ..+........+|+++|+||+|+... +.
T Consensus 156 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~~----~~ 231 (397)
T 1wxq_A 156 RIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASD----EQ 231 (397)
T ss_dssp TTTSSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSCH----HH
T ss_pred HHhhcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCccccch----HH
Confidence 0111 12222233346999999999998732 22
Q ss_pred HHHHHHHhccCCCCeEEEeecCCCCChHHHHH
Q psy17091 315 KNNIKKKLNFLSFAMFNFISAIKLNNINSFME 346 (1250)
Q Consensus 315 ~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~ 346 (1250)
.+.+.+.+... ..+++++||+.+.|+.+|++
T Consensus 232 l~~l~~~~~~~-~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 232 IKRLVREEEKR-GYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HHHHHHHHHHT-TCEEEEECHHHHHHHHSCSS
T ss_pred HHHHHHHHhhc-CCcEEEEeccchhhHHHHHh
Confidence 33444433211 36899999999999887654
No 362
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.62 E-value=1.2e-15 Score=186.58 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=109.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+++|.+|||||||+|+|++.+. +...| |++.....+.+++..+.||||||+... ...+..+++.
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~~~ 389 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS--VTTIP--TVGFNVETVTYKNVKFNVWDVGGQDKI---------RPLWRHYYTG 389 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--CCCCC--CSSEEEEEEESSSCEEEEEEECCCGGG---------SGGGGGGGTT
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC--CCcCC--ccceeEEEEEeCCEEEEEEECCCcHHH---------HHHHHHHhcc
Confidence 4899999999999999999998873 33333 777777788888999999999997632 2335667899
Q ss_pred CCEEEEEEeCCCCCChhh--HHHHHHHHh---cCCCEEEEEeCCCCCCCccchhHH-hcCC-------CCcEecccccCC
Q psy17091 83 SDIIIFIVDGRQGLVEQD--KLITNFLRK---SGQPIVLVINKSENINSSISLDFY-ELGI-------GNPHIISALYGN 149 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~--~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~~~~~-~~~~-------~~~~~iSA~~g~ 149 (1250)
+|++|+|+|++++.+... ..+..+++. .++|+++|+||+|+.+.....+.. .++. ..++++||++|.
T Consensus 390 ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 469 (497)
T 3lvq_E 390 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 469 (497)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTB
T ss_pred CCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCC
Confidence 999999999987432222 223333332 478999999999997654332221 1221 147899999999
Q ss_pred chhHHHHHHHHhhCCc
Q psy17091 150 GIKNFLENILTIELPY 165 (1250)
Q Consensus 150 gi~~L~~~i~~~l~~~ 165 (1250)
|+++++++|.+.+...
T Consensus 470 gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 470 GLYEGLTWLTSNYKSK 485 (497)
T ss_dssp THHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999877543
No 363
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.62 E-value=2.8e-15 Score=182.28 Aligned_cols=129 Identities=17% Similarity=0.300 Sum_probs=97.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCccee---------------cc------CCCCcceeeEEEEEEEcCeeEEEEecCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI---------------TY------DTPGTTRDSIKSLFEYNNKKYILIDTAG 239 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~---------------~~------~~~gtT~~~~~~~~~~~~~~~~liDTpG 239 (1250)
+..+|+|+|++|+|||||+|+|++....+ +. ..+|+|.+.....+.+++..+.||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 46899999999999999999998532111 11 2567777777778889999999999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHH
Q psy17091 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIK 319 (1250)
Q Consensus 240 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~ 319 (1250)
+.++. ..+..+++.+|++|+|+|++++...+...++..+...++|+++|+||+|+..... .+..++++
T Consensus 92 ~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~-~~~~~~i~ 159 (529)
T 2h5e_A 92 HEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDP-MELLDEVE 159 (529)
T ss_dssp STTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCH-HHHHHHHH
T ss_pred ChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccH-HHHHHHHH
Confidence 97654 1234678899999999999999999999999988888999999999999975432 23344444
Q ss_pred HH
Q psy17091 320 KK 321 (1250)
Q Consensus 320 ~~ 321 (1250)
+.
T Consensus 160 ~~ 161 (529)
T 2h5e_A 160 NE 161 (529)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 364
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.61 E-value=1.5e-15 Score=186.53 Aligned_cols=160 Identities=21% Similarity=0.212 Sum_probs=113.8
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCC-CcceeeEEEEEEEc------------------CeeEEEEecCCCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-GTTRDSIKSLFEYN------------------NKKYILIDTAGIR 241 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~------------------~~~~~liDTpG~~ 241 (1250)
++++|+|+|++|+|||||+|+|++... ....+ |+|.+.....+.++ ...+++|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 468999999999999999999997533 22233 56655433333321 1259999999997
Q ss_pred CCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccc-----------
Q psy17091 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQ----------- 310 (1250)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~----------- 310 (1250)
++.... ..+++.+|++++|+|+++++..+....+..+...++|+++|+||+|+.+...
T Consensus 82 ~F~~~~-----------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~s 150 (594)
T 1g7s_A 82 AFTTLR-----------KRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETF 150 (594)
T ss_dssp CCTTSB-----------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHH
T ss_pred HHHHHH-----------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHH
Confidence 764211 1456789999999999999999999999999999999999999999974210
Q ss_pred ----------hHHHHHHHHHHhc--------------cCCCCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 311 ----------RKIIKNNIKKKLN--------------FLSFAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 311 ----------~~~~~~~l~~~l~--------------~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
..+...++...+. .....|++++||++|.|+++|++++....+
T Consensus 151 a~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 151 SKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0111111222221 123458999999999999999999977654
No 365
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.61 E-value=1.1e-16 Score=184.21 Aligned_cols=203 Identities=19% Similarity=0.220 Sum_probs=129.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHh------CCcceeccCCCCcce------------------------------------
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLL------GENRVITYDTPGTTR------------------------------------ 218 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~------~~~~~~~~~~~gtT~------------------------------------ 218 (1250)
+...++|+|.||||||||+|.|. +.+..+.+..++++.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 35689999999999999999998 445544443333322
Q ss_pred -eeEEE--EEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc
Q psy17091 219 -DSIKS--LFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS 295 (1250)
Q Consensus 219 -~~~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p 295 (1250)
+.... .+...+.+++++||||+.... . .....+|++++|+|++.+. ....+...+. ..+
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~--------~------~v~~~~d~vl~v~d~~~~~--~~~~i~~~i~--~~~ 195 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSE--------T------AVADLTDFFLVLMLPGAGD--ELQGIKKGIF--ELA 195 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCH--------H------HHHTTSSEEEEEECSCC--------CCTTHH--HHC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcch--------h------hHHhhCCEEEEEEcCCCcc--cHHHHHHHHh--ccc
Confidence 11100 022357899999999996531 0 1236899999999986542 1111111111 246
Q ss_pred EEEEEeccccCCcc-chHHHHHHHHHHhccCC------CCeEEEeecCCCCChHHHHHHHHHHHhhcc-----cccChhH
Q psy17091 296 LIVCVNKWDSIIHN-QRKIIKNNIKKKLNFLS------FAMFNFISAIKLNNINSFMESINHVYDSSI-----IHLSTSR 363 (1250)
Q Consensus 296 ~iiv~NK~Dl~~~~-~~~~~~~~l~~~l~~~~------~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~-----~~~~~~~ 363 (1250)
.++|+||+|+.+.. ......+.+...+.... ..+++++||++|.|+++|++.|.+...... .+..+..
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~~~~~r~~~ 275 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGKRREQ 275 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 78888999976432 22223344444333222 368999999999999999999988765321 1112333
Q ss_pred HHHHHHHHHHc------CCCcccccccceeeccccCCCCCCceE
Q psy17091 364 ITRALISAIKN------HPPCRKKLIRPKLRYAHQGGKNPPIIV 401 (1250)
Q Consensus 364 l~~~l~~~~~~------~~~~~~~~~~~~~~~~~q~~~~pp~fv 401 (1250)
...++.+++.. +++|..+++..+++|++|.+..||.+.
T Consensus 276 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 319 (337)
T 2qm8_A 276 DVKWMWALVHERLHQRLVGSAEVRQATAEAERAVAGGEHSPAAG 319 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHcCCCCHHHH
Confidence 44555555555 677777778899999999999999764
No 366
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.61 E-value=6.4e-17 Score=193.62 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=119.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
++.+|+++|++|+|||||+++|++.. ...+..+|+|.+.....+.+++..+++|||||+.++... ...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~-----------~~~ 70 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSM-----------RAR 70 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTS-----------BCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHH-----------HHH
Confidence 46789999999999999999999744 233456788888776777778889999999999766421 124
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHH--Hh-cc-CCCCeEEEeecC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKK--KL-NF-LSFAMFNFISAI 336 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~--~l-~~-~~~~~iv~iSA~ 336 (1250)
.+..+|++++|+|++++...+....+..+...+.|+++|+||+|+.+.+. +...+++.+ .+ .. ....|++++||+
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 56889999999999999999999988888889999999999999975321 001111100 00 00 113689999999
Q ss_pred CCCChHHHHHHHH
Q psy17091 337 KLNNINSFMESIN 349 (1250)
Q Consensus 337 ~g~gv~~l~~~i~ 349 (1250)
+|.|+++|++++.
T Consensus 150 tG~gI~eLle~I~ 162 (501)
T 1zo1_I 150 AGTGIDELLDAIL 162 (501)
T ss_dssp TCTTCTTHHHHTT
T ss_pred eccCcchhhhhhh
Confidence 9999999999874
No 367
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.61 E-value=2.5e-15 Score=172.57 Aligned_cols=165 Identities=18% Similarity=0.192 Sum_probs=110.9
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCC-----cccccCCC---cceee---------------------------------
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRD-----ALVANYPG---LTRDR--------------------------------- 40 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~-----~~v~~~~~---~T~~~--------------------------------- 40 (1250)
.|+|+++|.+|||||||+|+|++.+. .++...|+ +|++.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 48999999999999999999999875 34444552 22220
Q ss_pred -----eE----------EEEEE---CCEEEEEEecCCCCcch----hhHHHHHHHHHHHHHhhcCCEEEEEEeC-CCCCC
Q psy17091 41 -----HY----------GEGYI---GKKSFIIIDTGGFEPEV----KKGIMHEMTKQTKQAIIESDIIIFIVDG-RQGLV 97 (1250)
Q Consensus 41 -----~~----------~~~~~---~~~~~~liDTpG~~~~~----~~~~~~~~~~~~~~~~~~ad~il~v~D~-~~~~~ 97 (1250)
.. ..+++ ++..+.||||||+.... ...+.+.+...+..++..+|++++|+|+ ..+..
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 00 00111 34689999999986421 1234456778888999999999999997 44555
Q ss_pred hhh-HHHHHHHHhcCCCEEEEEeCCCCCCCcc-chhHHh-------cCCCCcEeccccc---CCchhHHHHHHHHhhCCc
Q psy17091 98 EQD-KLITNFLRKSGQPIVLVINKSENINSSI-SLDFYE-------LGIGNPHIISALY---GNGIKNFLENILTIELPY 165 (1250)
Q Consensus 98 ~~~-~~~~~~l~~~~~p~ilv~NK~D~~~~~~-~~~~~~-------~~~~~~~~iSA~~---g~gi~~L~~~i~~~l~~~ 165 (1250)
..+ ..+.+++...++|+++|+||+|+..... ..+... .++.++.++||.+ +.|+.++++.+.+.++..
T Consensus 184 ~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 184 NSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 444 4677888778899999999999976554 233332 1222345566677 889999999998888654
Q ss_pred c
Q psy17091 166 K 166 (1250)
Q Consensus 166 ~ 166 (1250)
.
T Consensus 264 ~ 264 (315)
T 1jwy_B 264 P 264 (315)
T ss_dssp T
T ss_pred C
Confidence 3
No 368
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.61 E-value=1.5e-15 Score=159.64 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=101.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ..+.+++.+.....+.+++ ..+.+|||||+... ......++
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 76 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY---------DNVRPLSY 76 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG---------TTTGGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhh---------hhhHHhhc
Confidence 58999999999999999999987642 2222222222233444444 57899999997532 12234467
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCC------------ccc-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINS------------SIS-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~D~~~~------------~~~-----~~~~-~~~~~ 138 (1250)
..+|++++|+|++++.+... ..|...++. .+.|+++|+||+|+.+. ... .++. ..+..
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (184)
T 1m7b_A 77 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA 156 (184)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCc
Confidence 89999999999987432222 224444444 37899999999999742 111 2222 34544
Q ss_pred CcEecccc-cCCchhHHHHHHHHhh
Q psy17091 139 NPHIISAL-YGNGIKNFLENILTIE 162 (1250)
Q Consensus 139 ~~~~iSA~-~g~gi~~L~~~i~~~l 162 (1250)
+++++||+ ++.|++++++.+.+.+
T Consensus 157 ~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 157 TYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred EEEEeeecCCCcCHHHHHHHHHHHH
Confidence 78999999 6999999999998754
No 369
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.60 E-value=3.1e-15 Score=188.26 Aligned_cols=168 Identities=20% Similarity=0.328 Sum_probs=119.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCc--------------ceee--------------------------
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGT--------------TRDS-------------------------- 220 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gt--------------T~~~-------------------------- 220 (1250)
..++|+|+|.+|+|||||+|+|+|.+...++..|+| |++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 479999999999999999999999988888888887 3321
Q ss_pred -------------EEEEEEEcC----eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHH
Q psy17091 221 -------------IKSLFEYNN----KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDI 283 (1250)
Q Consensus 221 -------------~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~ 283 (1250)
....+.++. ..+.||||||+.+.. . ....+..+++.+|++++|+|++++.+..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-------~-~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-------A-RNELSLGYVNNCHAILFVMRASQPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-------T-CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh-------h-HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence 001111111 469999999984321 1 123455778999999999999999998888
Q ss_pred HHHH-HHHHcCCcEEEEEeccccCCcc--------chHH----HHHHHHHHhc-c-------CCCCeEEEeecC------
Q psy17091 284 NIAN-FIYESGRSLIVCVNKWDSIIHN--------QRKI----IKNNIKKKLN-F-------LSFAMFNFISAI------ 336 (1250)
Q Consensus 284 ~~~~-~~~~~~~p~iiv~NK~Dl~~~~--------~~~~----~~~~l~~~l~-~-------~~~~~iv~iSA~------ 336 (1250)
..+. .+.+.++|+++|+||+|+.+.. .... ..+.+...+. . ....+++++||+
T Consensus 220 ~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 220 RYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp HHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 7664 4555689999999999997543 1111 1122222221 1 123479999999
Q ss_pred --------CCCChHHHHHHHHHHHhhcc
Q psy17091 337 --------KLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 337 --------~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+|.|++++++.+.+.+....
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999988776543
No 370
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.60 E-value=4.6e-16 Score=187.40 Aligned_cols=156 Identities=20% Similarity=0.261 Sum_probs=102.7
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcce------------------------ec------cCCCCcceeeEEEEEEEcC
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRV------------------------IT------YDTPGTTRDSIKSLFEYNN 229 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~------------------------~~------~~~~gtT~~~~~~~~~~~~ 229 (1250)
...++|+++|++|+|||||+|+|+..... .+ ....|+|.+.....+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 34689999999999999999999742110 01 1146888888777788889
Q ss_pred eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCC-------HHHHHHHHHHHHcCCc-EEEEEe
Q psy17091 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNIS-------AQDINIANFIYESGRS-LIVCVN 301 (1250)
Q Consensus 230 ~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~-------~~d~~~~~~~~~~~~p-~iiv~N 301 (1250)
..+.+|||||+.++. ......++.+|++|+|+|++++.. .+..+.+..+...++| +|+|+|
T Consensus 121 ~~~~iiDtPGh~~f~-----------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN 189 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYV-----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 189 (467)
T ss_dssp EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred eEEEEEECCCcHHHH-----------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEE
Confidence 999999999995442 223456789999999999998742 4666777777778898 999999
Q ss_pred ccccCCc----cchHHHHHHHHHHhccC-C-----CCeEEEeecCCCCChHHHHH
Q psy17091 302 KWDSIIH----NQRKIIKNNIKKKLNFL-S-----FAMFNFISAIKLNNINSFME 346 (1250)
Q Consensus 302 K~Dl~~~----~~~~~~~~~l~~~l~~~-~-----~~~iv~iSA~~g~gv~~l~~ 346 (1250)
|+|+.+. ...+...+++.+.+... + ..+++++||++|.|++++++
T Consensus 190 K~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 190 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 9999642 22344444555444322 1 36899999999999998764
No 371
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.59 E-value=6.4e-15 Score=185.27 Aligned_cols=130 Identities=21% Similarity=0.228 Sum_probs=97.5
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcce-----------eccC------CCCcceeeEEEEEEEcCeeEEEEecCCCCCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRV-----------ITYD------TPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~-----------~~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 243 (1250)
+..+|+|+|++|+|||||+|+|++.... .+.+ .+|+|.......+.+++..++||||||+.+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 4689999999999999999999842111 1112 4678888878888999999999999999765
Q ss_pred CcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHh
Q psy17091 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL 322 (1250)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l 322 (1250)
. .....+++.+|++++|+|++++.+.++..++..+.+.++|+++|+||+|+... ......+++++.+
T Consensus 89 ~-----------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~-~~~~~~~~l~~~l 155 (693)
T 2xex_A 89 T-----------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA-NFEYSVSTLHDRL 155 (693)
T ss_dssp C-----------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC-CHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc-chHHHHHHHHHHh
Confidence 4 12345667899999999999999999999999999999999999999999753 2344445555443
No 372
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.59 E-value=2.5e-16 Score=184.82 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=91.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEE---------------------CC---EEEEEEecCC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI---------------------GK---KSFIIIDTGG 59 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~---------------------~~---~~~~liDTpG 59 (1250)
+|+++|.||||||||+|+|++.+ +.++++|++|++...+...+ ++ .++.||||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 79999999999999999999988 67899999999988876432 22 5799999999
Q ss_pred CCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC------------------------------------------
Q psy17091 60 FEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLV------------------------------------------ 97 (1250)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~------------------------------------------ 97 (1250)
+..... ..+.+..++..+++++|++++|+|++++..
T Consensus 81 ~~~~a~--~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~ 158 (397)
T 1wxq_A 81 LVPGAH--EGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIK 158 (397)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTT
T ss_pred cccchh--hhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 864221 112233444566799999999999987410
Q ss_pred -----------------------------------------hhh-HHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhH
Q psy17091 98 -----------------------------------------EQD-KLITNFLRKSGQPIVLVINKSENINSSIS---LDF 132 (1250)
Q Consensus 98 -----------------------------------------~~~-~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~ 132 (1250)
..+ ..+..++....+|+++|+||+|+...... .+.
T Consensus 159 ~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~~~~l~~l~~~ 238 (397)
T 1wxq_A 159 LQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVRE 238 (397)
T ss_dssp SSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSCHHHHHHHHHH
T ss_pred hcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCccccchHHHHHHHHH
Confidence 000 11222333356999999999998732212 222
Q ss_pred HhcCCCCcEecccccCCchhHHHH-HHHHhhCCcc
Q psy17091 133 YELGIGNPHIISALYGNGIKNFLE-NILTIELPYK 166 (1250)
Q Consensus 133 ~~~~~~~~~~iSA~~g~gi~~L~~-~i~~~l~~~~ 166 (1250)
+.....+++++||+.+.|+.+|++ .+.+.+++..
T Consensus 239 ~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~ 273 (397)
T 1wxq_A 239 EEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGAS 273 (397)
T ss_dssp HHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC---
T ss_pred HhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCc
Confidence 221123789999999999998877 6666665543
No 373
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.59 E-value=2.3e-15 Score=161.39 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=102.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++.... ....|++..+. ...+.+++ ..+.||||||+.... .....++
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~ 97 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYD---------NVRPLSY 97 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGT---------TTGGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhh---------HHHHhhc
Confidence 48999999999999999999987643 22233333332 33444444 589999999975321 2234467
Q ss_pred hcCCEEEEEEeCCCCCChhh--HHHHHHHHh--cCCCEEEEEeCCCCCCC------------ccc-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQD--KLITNFLRK--SGQPIVLVINKSENINS------------SIS-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~--~~~~~~l~~--~~~p~ilv~NK~D~~~~------------~~~-----~~~~-~~~~~ 138 (1250)
..+|++|+|+|+++..+... ..|...++. .+.|+++|+||+|+.+. ... .++. ..+..
T Consensus 98 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 177 (205)
T 1gwn_A 98 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA 177 (205)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCC
Confidence 89999999999987432222 234444444 36899999999999742 111 2222 33544
Q ss_pred CcEecccc-cCCchhHHHHHHHHhh
Q psy17091 139 NPHIISAL-YGNGIKNFLENILTIE 162 (1250)
Q Consensus 139 ~~~~iSA~-~g~gi~~L~~~i~~~l 162 (1250)
.++++||+ +|.|++++++.+.+.+
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHH
Confidence 78999999 6899999999998754
No 374
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.59 E-value=6.7e-15 Score=179.76 Aligned_cols=130 Identities=22% Similarity=0.291 Sum_probs=99.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcc---------------eec------cCCCCcceeeEEEEEEEcCeeEEEEecCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENR---------------VIT------YDTPGTTRDSIKSLFEYNNKKYILIDTAG 239 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~---------------~~~------~~~~gtT~~~~~~~~~~~~~~~~liDTpG 239 (1250)
+.-+|+|+|+.++|||||..+|+.... ..+ ....|+|..+....+.|++..++||||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 467899999999999999999972110 011 22468888888899999999999999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHH
Q psy17091 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIK 319 (1250)
Q Consensus 240 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~ 319 (1250)
+.++. ..+.++++-+|++|+|+|+.+|+..|...+++.+.+.++|.++++||+|.... +.....++++
T Consensus 110 HvDF~-----------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a-d~~~~~~~i~ 177 (548)
T 3vqt_A 110 HQDFS-----------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL-HPLDVMADIE 177 (548)
T ss_dssp GGGCS-----------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC-CHHHHHHHHH
T ss_pred cHHHH-----------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc-chhHhhhhhh
Confidence 98885 23456778899999999999999999999999999999999999999998643 3344444444
Q ss_pred HHh
Q psy17091 320 KKL 322 (1250)
Q Consensus 320 ~~l 322 (1250)
+.+
T Consensus 178 ~~l 180 (548)
T 3vqt_A 178 QHL 180 (548)
T ss_dssp HHH
T ss_pred hhc
Confidence 443
No 375
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.59 E-value=3.7e-15 Score=176.69 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=107.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcce--------------ee-----eEEEEEECCEEEEEEecCCCCcc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTR--------------DR-----HYGEGYIGKKSFIIIDTGGFEPE 63 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~--------------~~-----~~~~~~~~~~~~~liDTpG~~~~ 63 (1250)
.+|+++|++|+|||||+|+|++........++..|. +. ...........+.+|||||+.
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~-- 86 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE-- 86 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG--
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH--
Confidence 589999999999999999999854321111111110 00 000001112689999999975
Q ss_pred hhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCC-ChhhHHHHHHHHhcC-CCEEEEEeCCCCCCCccc----hh---HH-
Q psy17091 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL-VEQDKLITNFLRKSG-QPIVLVINKSENINSSIS----LD---FY- 133 (1250)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~-~~~~~~~~~~l~~~~-~p~ilv~NK~D~~~~~~~----~~---~~- 133 (1250)
.+...+...+..+|++|+|+|++++. ..+..++..+++..+ +|+++|+||+|+.+.... .+ +.
T Consensus 87 -------~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 87 -------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp -------GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 44566777789999999999999886 566667777777656 489999999999865432 11 11
Q ss_pred hcC--CCCcEecccccCCchhHHHHHHHHhhCCc
Q psy17091 134 ELG--IGNPHIISALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 134 ~~~--~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
..+ ..+++++||++|.|+++|++.+.+.++..
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 111 23689999999999999999999877654
No 376
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6e-15 Score=170.21 Aligned_cols=117 Identities=25% Similarity=0.274 Sum_probs=89.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
.+|+|||.||||||||||+|++.+. .++++|++|+++..+.+.+.+.+++++||||+.....+ .+....+++..++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~--~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD--GRGRGKQVIAVART 149 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------CHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh--hhHHHHHHHHHHHh
Confidence 4799999999999999999999874 58999999999999999999999999999998754321 12344677888999
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHh-----cCCCEEEEEeCCCC
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRK-----SGQPIVLVINKSEN 123 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~-----~~~p~ilv~NK~D~ 123 (1250)
+|++++|+|++++... ...+...|.. ..+|.++++||+|.
T Consensus 150 ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp CSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 9999999999864322 1223334443 24577777888774
No 377
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.37 E-value=1.1e-16 Score=171.56 Aligned_cols=148 Identities=20% Similarity=0.190 Sum_probs=104.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|+|++... .....+++.+.....+.+++. .+.+|||||+. ++......++
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 99 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE---------DYDRLRPLSY 99 (204)
Confidence 4899999999999999999997653 344455555555555555554 56699999975 3344555678
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHhc--CCCEEEEEeCCCCCCCcc------------c-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRKS--GQPIVLVINKSENINSSI------------S-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~~--~~p~ilv~NK~D~~~~~~------------~-----~~~~-~~~~~ 138 (1250)
..+|++++|+|++++.+..+. .+...+... +.|+++|+||+|+.+... . .++. ..+..
T Consensus 100 ~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 3th5_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
Confidence 899999999999875433332 344555543 789999999999975431 1 1111 22323
Q ss_pred CcEecccccCCchhHHHHHHHHh
Q psy17091 139 NPHIISALYGNGIKNFLENILTI 161 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~ 161 (1250)
+++++||++|.|++++++.+.+.
T Consensus 180 ~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 180 KYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 67899999999999999998754
No 378
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.58 E-value=4e-15 Score=181.93 Aligned_cols=155 Identities=23% Similarity=0.270 Sum_probs=111.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCccc--------------ccCCCcceeeeEEEEEECC-----EEEEEEecCCCCcc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV--------------ANYPGLTRDRHYGEGYIGK-----KSFIIIDTGGFEPE 63 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v--------------~~~~~~T~~~~~~~~~~~~-----~~~~liDTpG~~~~ 63 (1250)
++|+++|++|+|||||+++|+.....+. ....|+|.......+.|.. ..+.||||||+.+
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d- 85 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD- 85 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG-
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh-
Confidence 5899999999999999999976321111 1124666665555555642 6889999999873
Q ss_pred hhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHH-hcCCC-
Q psy17091 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY-ELGIG- 138 (1250)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~-~~~~~- 138 (1250)
+...+..++..+|++|+|+|++++...+.......+...+.|+++|+||+|+...... .++. .+++.
T Consensus 86 --------F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 86 --------FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDP 157 (600)
T ss_dssp --------GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCG
T ss_pred --------HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCc
Confidence 3345666788999999999999988887776666666789999999999999765422 2222 22432
Q ss_pred -CcEecccccCCchhHHHHHHHHhhCCcc
Q psy17091 139 -NPHIISALYGNGIKNFLENILTIELPYK 166 (1250)
Q Consensus 139 -~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 166 (1250)
+++++||++|.|+++|++.+.+.++.+.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 4899999999999999999999887653
No 379
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.58 E-value=4.3e-14 Score=167.04 Aligned_cols=201 Identities=14% Similarity=0.140 Sum_probs=138.1
Q ss_pred eEEEEEeccCCCceeeeecccCCcccccccccCCC-C-cccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeee
Q psy17091 604 IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ-G-FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVM 681 (1250)
Q Consensus 604 ~ve~v~~~~~~~~t~c~ssq~GC~~~C~fC~t~~~-~-~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivf 681 (1250)
.++.+.-. ...+++++...||+++|.||..+.. + -.+.++.+||...+..+.+. ..+.+|+|
T Consensus 105 ~~~gl~hr--yp~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~--------------~gi~~V~l 168 (416)
T 2a5h_A 105 PVPGLTHR--YPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNT--------------PQVRDVLL 168 (416)
T ss_dssp SBTTEECC--SSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTC--------------TTCCEEEE
T ss_pred cccCcccc--CCCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhc--------------CCCcEEEE
Confidence 34444443 3457788888999999999997753 2 22578888886655444321 23678999
Q ss_pred cccCccCCCHH-HHHHHHHHhhcCCCCCCCCceEEEEecCc-h------hH-HHHhhhhCCCeEEEEccCCChhhhhccC
Q psy17091 682 MGMGEPLLNYK-STIGALKLILSDHAYGLSRRHVILSTSGI-I------PM-IDKLAQECPVELAVSLHASNNNLRNKLV 752 (1250)
Q Consensus 682 mg~GEpl~n~~-~v~~~~~~~~~~~~~~~~~~~itvsT~g~-~------~~-i~~~~~~~~~~la~sl~~~~~~~r~~~~ 752 (1250)
+| ||||++++ .+.+.++.+++..+ -.+++++|+|. . +. ++.|.+. ..+.+|+|+.++ +++.
T Consensus 169 tG-GEPll~~d~~L~~il~~l~~~~~----v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~---~ei~ 238 (416)
T 2a5h_A 169 SG-GDALLVSDETLEYIIAKLREIPH----VEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHP---NEIT 238 (416)
T ss_dssp EE-SCTTSSCHHHHHHHHHHHHTSTT----CCEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSG---GGCC
T ss_pred EC-CCCCCCCHHHHHHHHHHHHhcCC----ccEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCH---HHHh
Confidence 99 99999987 68888888886422 24799999992 1 33 4444444 457789998776 3442
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCC-CCCCCCCCc
Q psy17091 753 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCF-PNSNLICSK 831 (1250)
Q Consensus 753 p~~~~~~~~~l~~~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~-~~~~~~~p~ 831 (1250)
++++++++.+.+ .| ..+.+.+++++|+||+++++.+|++++.. +......|.+.|. .+..+...+
T Consensus 239 --------~~v~~ai~~L~~-aG-i~v~i~~vll~GvNd~~e~l~~l~~~l~~----lgv~~~~i~~~~~~~g~~~~~~~ 304 (416)
T 2a5h_A 239 --------EESTRACQLLAD-AG-VPLGNQSVLLRGVNDCVHVMKELVNKLVK----IRVRPYYIYQCDLSLGLEHFRTP 304 (416)
T ss_dssp --------HHHHHHHHHHHH-TT-CCEEEEEECCTTTTCSHHHHHHHHHHHHH----TTEEEEEEECCCCBTTCGGGCCC
T ss_pred --------HHHHHHHHHHHH-cC-CEEEEEEEEECCCCCCHHHHHHHHHHHHH----cCCceEEEeecCCCCCcccccCC
Confidence 889999987765 44 48999999999999999999999999988 4444444444443 333343344
Q ss_pred HHHHHHHHHHHHh
Q psy17091 832 NSRIKIFAKILMN 844 (1250)
Q Consensus 832 ~e~i~~f~~iL~~ 844 (1250)
......+.+.++.
T Consensus 305 ~~~~~eil~~l~~ 317 (416)
T 2a5h_A 305 VSKGIEIIEGLRG 317 (416)
T ss_dssp HHHHHHHHHTTBT
T ss_pred cccHHHHHHHHHH
Confidence 4444444444544
No 380
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.58 E-value=3.9e-15 Score=176.70 Aligned_cols=154 Identities=21% Similarity=0.185 Sum_probs=119.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcC--------CCccc--------ccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNS--------RDALV--------ANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~--------~~~~v--------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 66 (1250)
.+|+++|++|+|||||+|+|++. ..... ...+|+|.+.....+.+.+..+.||||||+.
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~----- 86 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA----- 86 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG-----
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH-----
Confidence 48999999999999999999873 10000 1246788888777777778899999999986
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCccc--------hhHH-hcC
Q psy17091 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS--------LDFY-ELG 136 (1250)
Q Consensus 67 ~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~D~~~~~~~--------~~~~-~~~ 136 (1250)
++...+..++..+|++|+|+|++++...+..++..+++..+.| +++|+||+|+.+.... .+++ ..+
T Consensus 87 ----~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 ----DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp ----GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 3345566778899999999999998888888888888888899 8899999999753221 1222 334
Q ss_pred C----CCcEecccccCCc------------------hhHHHHHHHHhhCCc
Q psy17091 137 I----GNPHIISALYGNG------------------IKNFLENILTIELPY 165 (1250)
Q Consensus 137 ~----~~~~~iSA~~g~g------------------i~~L~~~i~~~l~~~ 165 (1250)
+ .+++++||++|.| +.+|++.+.+.++.+
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 3 3689999999987 889999998877654
No 381
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.58 E-value=1.3e-14 Score=172.37 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=115.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCc--ccccCCCcceeeeEEEEEEC-----------------------CEEEEEEec
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDA--LVANYPGLTRDRHYGEGYIG-----------------------KKSFIIIDT 57 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~--~v~~~~~~T~~~~~~~~~~~-----------------------~~~~~liDT 57 (1250)
.+|+++|++|+|||||+|+|++.... .....+|+|.+..+....+. ...+.||||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 47999999999999999999976432 12345788887766554441 168999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCC-ChhhHHHHHHHHhcC-CCEEEEEeCCCCCCCccc------
Q psy17091 58 GGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL-VEQDKLITNFLRKSG-QPIVLVINKSENINSSIS------ 129 (1250)
Q Consensus 58 pG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~-~~~~~~~~~~l~~~~-~p~ilv~NK~D~~~~~~~------ 129 (1250)
||+. .+...+...+..+|++|+|+|++++. ..+..+....++..+ .|+++|+||+|+.+....
T Consensus 91 PGh~---------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 161 (410)
T 1kk1_A 91 PGHE---------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQ 161 (410)
T ss_dssp SSHH---------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred CChH---------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHH
Confidence 9954 45566777788999999999999876 566666556666555 479999999999765421
Q ss_pred -hhHHhc---CCCCcEecccccCCchhHHHHHHHHhhCCc
Q psy17091 130 -LDFYEL---GIGNPHIISALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 130 -~~~~~~---~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
.+++.. ...+++++||++|.|+++|++.+.+.++..
T Consensus 162 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 162 IKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 222221 223689999999999999999999877654
No 382
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=2.5e-14 Score=169.80 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=105.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcc--cccCCCcceeeeEEEEEE---------------C--------CEEEEEEec
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL--VANYPGLTRDRHYGEGYI---------------G--------KKSFIIIDT 57 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~--v~~~~~~T~~~~~~~~~~---------------~--------~~~~~liDT 57 (1250)
.+|+++|++|+|||||+|+|++..... ....+|+|.+..+....+ . ...+.||||
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 88 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDS 88 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEEC
Confidence 489999999999999999999764321 233467788765544333 1 168999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCccc------
Q psy17091 58 GGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL-VEQDKLITNFLRKSGQ-PIVLVINKSENINSSIS------ 129 (1250)
Q Consensus 58 pG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~-~~~~~~~~~~l~~~~~-p~ilv~NK~D~~~~~~~------ 129 (1250)
||+. .+...+...+..+|++|+|+|++++. ..+..+....++..+. |+++|+||+|+.+....
T Consensus 89 PGh~---------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 89 PGHE---------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp SSHH---------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred CCHH---------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9954 45566667778899999999999876 5555565566666554 79999999999765432
Q ss_pred -hhHHhc---CCCCcEecccccCCchhHHHHHHHHhhCCc
Q psy17091 130 -LDFYEL---GIGNPHIISALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 130 -~~~~~~---~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
.++... ...+++++||++|.|+++|++.+.+.++..
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 222221 123689999999999999999999877654
No 383
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.57 E-value=1.1e-14 Score=183.23 Aligned_cols=129 Identities=18% Similarity=0.193 Sum_probs=95.3
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcce-----e------ccC------CCCcceeeEEEEEEEcCeeEEEEecCCCCCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRV-----I------TYD------TPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~-----~------~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 243 (1250)
+..+|+|+|++|+|||||+|+|+..... . +.+ ..|+|.......+.+++..++||||||+.++
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 4689999999999999999999832111 0 111 4577887777888899999999999999654
Q ss_pred CcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHH
Q psy17091 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKK 321 (1250)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~ 321 (1250)
. .....+++.+|++++|+|++++.+.++..++..+.+.++|+++|+||+|+.... .....+++++.
T Consensus 91 ~-----------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-~~~~~~~l~~~ 156 (691)
T 1dar_A 91 T-----------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD-LWLVIRTMQER 156 (691)
T ss_dssp H-----------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred H-----------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCC-HHHHHHHHHHH
Confidence 2 223456788999999999999999999999999999999999999999997532 33444444443
No 384
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.57 E-value=3e-15 Score=157.43 Aligned_cols=153 Identities=18% Similarity=0.260 Sum_probs=97.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccc-cCCCcceeeeEEEEEE-----CCEEEEEEecCCCCcchhhHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVA-NYPGLTRDRHYGEGYI-----GKKSFIIIDTGGFEPEVKKGIMHEMTKQ 75 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~-~~~~~T~~~~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~ 75 (1250)
..+|+++|++|||||||+|+|++....... ..++++.+.....+.+ ....+.+|||||++ ++...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~ 72 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE---------EFYST 72 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH---------HHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH---------HHHHh
Confidence 358999999999999999999986433333 3344445554443332 34589999999964 23333
Q ss_pred HHHHhhcCCEEEEEEeCCCCCChhhHHHHHHH---Hh--cCCCEEEEEeCCCCCCCccc--------hhHH-hcCCC---
Q psy17091 76 TKQAIIESDIIIFIVDGRQGLVEQDKLITNFL---RK--SGQPIVLVINKSENINSSIS--------LDFY-ELGIG--- 138 (1250)
Q Consensus 76 ~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l---~~--~~~p~ilv~NK~D~~~~~~~--------~~~~-~~~~~--- 138 (1250)
...++..+|++++|+|.+++... ...+..|+ .. .+.|+++|+||+|+.+.... .++. ..++.
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~~s-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
T 2zej_A 73 HPHFMTQRALYLAVYDLSKGQAE-VDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIR 151 (184)
T ss_dssp SHHHHHHSEEEEEEEEGGGCHHH-HHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEE
T ss_pred hHHHccCCcEEEEEEeCCcchhH-HHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchh
Confidence 45567789999999998774211 11223333 22 37899999999998754332 1111 23442
Q ss_pred CcEecccccCC-chhHHHHHHHHhhCC
Q psy17091 139 NPHIISALYGN-GIKNFLENILTIELP 164 (1250)
Q Consensus 139 ~~~~iSA~~g~-gi~~L~~~i~~~l~~ 164 (1250)
.++++||++|. |+++|++.+.+.+..
T Consensus 152 ~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 152 DYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred heEEEecccCchhHHHHHHHHHHHHhc
Confidence 27899999996 999999999887654
No 385
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.57 E-value=2.4e-15 Score=175.19 Aligned_cols=142 Identities=13% Similarity=0.110 Sum_probs=114.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhc
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIE 82 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (1250)
++|+++|++|+|||||+|+|+ ..++|.+.....+++++..+.||||||+.+ +...+..++..
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~---------f~~~~~~~~~~ 83 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK---------TLKSLITALNI 83 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT---------CHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH---------HHHHHHHHHHH
Confidence 389999999999999999998 456788888888888888999999999863 34455666789
Q ss_pred CCEEEEEEeCCCCCChhhHHHHHHHHhcCCCE-EEEEe-CCCCCCCccc-------hhHH-hcC--CCCcEe--ccccc-
Q psy17091 83 SDIIIFIVDGRQGLVEQDKLITNFLRKSGQPI-VLVIN-KSENINSSIS-------LDFY-ELG--IGNPHI--ISALY- 147 (1250)
Q Consensus 83 ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~-ilv~N-K~D~~~~~~~-------~~~~-~~~--~~~~~~--iSA~~- 147 (1250)
+|++|+|+| ..+...+..++..+++..+.|. ++|+| |+|+ +.+.. .++. ..+ ..++++ +||++
T Consensus 84 aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~ 161 (370)
T 2elf_A 84 SDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAK 161 (370)
T ss_dssp CSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSS
T ss_pred CCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccC
Confidence 999999999 8888888888888888888898 99999 9999 43321 1121 112 236789 99999
Q ss_pred --CCchhHHHHHHHHhhCC
Q psy17091 148 --GNGIKNFLENILTIELP 164 (1250)
Q Consensus 148 --g~gi~~L~~~i~~~l~~ 164 (1250)
+.|+++|++.+.+.++.
T Consensus 162 ~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 162 NPFEGVDELKARINEVAEK 180 (370)
T ss_dssp STTTTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhhccc
Confidence 99999999999887754
No 386
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.57 E-value=4.5e-15 Score=171.62 Aligned_cols=150 Identities=21% Similarity=0.186 Sum_probs=110.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEE--EEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|.+|||||||+|++++... ...+.++|.+.....+..++.. +.+|||||+... ......++
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 224 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY---------DRLRPLSY 224 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG---------TTTGGGGC
T ss_pred eEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhh---------hHHHHHhc
Confidence 5899999999999999999997753 4566777777777777777765 449999997632 23344567
Q ss_pred hcCCEEEEEEeCCCCCChhhH--HHHHHHHhc--CCCEEEEEeCCCCCCCc------------cc-----hhHH-hcCCC
Q psy17091 81 IESDIIIFIVDGRQGLVEQDK--LITNFLRKS--GQPIVLVINKSENINSS------------IS-----LDFY-ELGIG 138 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~--~~~~~l~~~--~~p~ilv~NK~D~~~~~------------~~-----~~~~-~~~~~ 138 (1250)
..+|++++|+|++++.+..+. .+...+... ++|+++|+||+|+.... .. .++. ..+..
T Consensus 225 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 304 (332)
T 2wkq_A 225 PQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 304 (332)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCc
Confidence 899999999999874333221 244555543 78999999999986532 11 1222 33444
Q ss_pred CcEecccccCCchhHHHHHHHHhhC
Q psy17091 139 NPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 139 ~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
+++++||++|.|++++++.+.+.+.
T Consensus 305 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 305 KYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHh
Confidence 7899999999999999999987654
No 387
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2e-14 Score=165.79 Aligned_cols=119 Identities=21% Similarity=0.242 Sum_probs=93.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
...+|+|+|.||||||||+|+|++.+ ..++++|+||+++..+.+.+++.+++++||||+.+..... .-...+++.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~----~~~g~~~l~ 145 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG----RGRGKQVIA 145 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC---------CHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh----hHHHHHHHH
Confidence 35789999999999999999999976 6678999999999999999999999999999997654221 112356778
Q ss_pred hhccCcEEEEEecCCCCCCHHHHHHH-HHHHH-----cCCcEEEEEeccccC
Q psy17091 261 SILEANVVILLLDAQQNISAQDINIA-NFIYE-----SGRSLIVCVNKWDSI 306 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~~~~~~d~~~~-~~~~~-----~~~p~iiv~NK~Dl~ 306 (1250)
.++.||++++|+|++++ ..+..++ ..+.. ..+|.++++||+|..
T Consensus 146 ~i~~ad~il~vvD~~~p--~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKP--LHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHCSEEEEEEETTSH--HHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHhcCccccccccCcc--HHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 89999999999999976 3343333 33333 257889999999963
No 388
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.56 E-value=4.9e-14 Score=164.11 Aligned_cols=191 Identities=17% Similarity=0.168 Sum_probs=147.0
Q ss_pred eecccCCcccccccccCCC-C-ccc-CCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCc-cCCCHHHHH
Q psy17091 620 ISTQVGCAINCIFCSTGRQ-G-FVR-NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE-PLLNYKSTI 695 (1250)
Q Consensus 620 ~ssq~GC~~~C~fC~t~~~-~-~~r-~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GE-pl~n~~~v~ 695 (1250)
|+...||+++|.||+.... + ..+ .++.+||++++..+.+ ..++.|+|.| || |+++++.+.
T Consensus 57 i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~---------------~g~~~i~~~g-Ge~p~~~~~~~~ 120 (348)
T 3iix_A 57 IEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQ---------------FGAKTIVLQS-GEDPYXMPDVIS 120 (348)
T ss_dssp EEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHH---------------TTCSEEEEEE-SCCGGGTTHHHH
T ss_pred eEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHH---------------CCCCEEEEEe-CCCCCccHHHHH
Confidence 7888999999999985432 2 222 5899999999876543 1267799988 99 999999999
Q ss_pred HHHHHhhcCCCCCCCCceEEEEecCchhH-HHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHHHHhhC
Q psy17091 696 GALKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS 774 (1250)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~itvsT~g~~~~-i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~ 774 (1250)
++++.+++. +.++++++..+.+. +++|.+.---.+.+|+++.+++.|+++.|.. +.++++++++... +.
T Consensus 121 ~li~~i~~~------~~~i~~s~g~l~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~---~~~~~~~~i~~~~-~~ 190 (348)
T 3iix_A 121 DIVKEIKKM------GVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDT---SFENRLNCLLTLK-EL 190 (348)
T ss_dssp HHHHHHHTT------SCEEEEECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTS---CHHHHHHHHHHHH-HT
T ss_pred HHHHHHHhc------CceEEEecCCCCHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCc---CHHHHHHHHHHHH-Hh
Confidence 999999986 56788766655555 4445443223466899999999999998743 9999999998654 43
Q ss_pred CCceEEEEEEEeccC-CCCHHHHHHHHHHhhcCCCccc-eeEeeeccCCCCCCCCC---CCcHHHHHHHHHHHH
Q psy17091 775 PRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTS-CKINLIPFNCFPNSNLI---CSKNSRIKIFAKILM 843 (1250)
Q Consensus 775 ~~~~v~~e~~li~g~-nd~~~~~~~l~~~~~~~~~~~~-~~vnlip~n~~~~~~~~---~p~~e~i~~f~~iL~ 843 (1250)
+ +.+...++.|+ +++.+++.+++++++. +. ..|++.||+|.++.++. +++.+...+...+++
T Consensus 191 -G--i~v~~~~i~G~p~et~e~~~~~~~~l~~----l~~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R 257 (348)
T 3iix_A 191 -G--YETGAGSMVGLPGQTIDDLVDDLLFLKE----HDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTR 257 (348)
T ss_dssp -T--CEEEECBEESCTTCCHHHHHHHHHHHHH----HTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHH
T ss_pred -C--CeeccceEEeCCCCCHHHHHHHHHHHHh----cCCCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHH
Confidence 3 56888999999 9999999999999998 54 57999999999887654 466665555555544
No 389
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.56 E-value=3e-14 Score=159.63 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=98.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|+|||||+|+|++.+...+++.+++|.+.....+..++..+.+|||||+.+.......... ......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~--~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALN--IIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHH--HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHH--HHHHHh
Confidence 469999999999999999999999887778889999999888888888999999999999766433221111 111111
Q ss_pred hhccCcEEEEEecCCC-CCCHHHHHHHHHHHHc-C----CcEEEEEeccccCCcc
Q psy17091 261 SILEANVVILLLDAQQ-NISAQDINIANFIYES-G----RSLIVCVNKWDSIIHN 309 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~-~~~~~d~~~~~~~~~~-~----~p~iiv~NK~Dl~~~~ 309 (1250)
..+.+|++++|+|++. .++..+..+++.+.+. + +|+++|+||+|+.++.
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2357999999977654 5677777888877653 3 6999999999997543
No 390
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.56 E-value=1.4e-14 Score=173.29 Aligned_cols=143 Identities=29% Similarity=0.324 Sum_probs=106.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCccccc--------------------------------CCCcceeeeEEEEEECCE
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN--------------------------------YPGLTRDRHYGEGYIGKK 50 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~--------------------------------~~~~T~~~~~~~~~~~~~ 50 (1250)
.+|+++|++|+|||||+|+|++....+..+ ..|+|.+.....+...+.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 489999999999999999998654222111 135677776777777889
Q ss_pred EEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCC-CEEEEEeCCCCCCCcc-
Q psy17091 51 SFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ-PIVLVINKSENINSSI- 128 (1250)
Q Consensus 51 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~-p~ilv~NK~D~~~~~~- 128 (1250)
.+.||||||+.. +...+..++..+|++|+|+|++++...+..++..++...+. |+++|+||+|+.+...
T Consensus 105 ~~~iiDtpGh~~---------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 105 KFIIADTPGHEQ---------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp EEEEEECCCSGG---------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHH
T ss_pred eEEEEECCChHH---------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHH
Confidence 999999999763 33445567899999999999999888777777777777776 4899999999976321
Q ss_pred ----c----hhHH-hcC--C--CCcEecccccCCchhHH
Q psy17091 129 ----S----LDFY-ELG--I--GNPHIISALYGNGIKNF 154 (1250)
Q Consensus 129 ----~----~~~~-~~~--~--~~~~~iSA~~g~gi~~L 154 (1250)
. .++. .++ . .+++++||++|.|++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1 1222 234 2 25789999999999873
No 391
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.56 E-value=1e-14 Score=172.42 Aligned_cols=154 Identities=20% Similarity=0.201 Sum_probs=118.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCC----cc-----------cccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRD----AL-----------VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKG 67 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~----~~-----------v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 67 (1250)
.+|+++|++|+|||||+|+|++... +. .....|+|.+.....+...+..+.||||||+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~------ 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA------ 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH------
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH------
Confidence 4799999999999999999987410 00 11246788887666666677899999999964
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCccc--------hhHH-hcCC
Q psy17091 68 IMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS--------LDFY-ELGI 137 (1250)
Q Consensus 68 ~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~D~~~~~~~--------~~~~-~~~~ 137 (1250)
++...+..++..+|++|+|+|++++...+..+...+++..+.| +++|+||+|+.+.... .++. ..++
T Consensus 78 ---~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 154 (397)
T 1d2e_A 78 ---DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY 154 (397)
T ss_dssp ---HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4556677788999999999999998888877777888888899 6899999999753221 1222 3343
Q ss_pred ----CCcEecccccCCc----------hhHHHHHHHHhhCCc
Q psy17091 138 ----GNPHIISALYGNG----------IKNFLENILTIELPY 165 (1250)
Q Consensus 138 ----~~~~~iSA~~g~g----------i~~L~~~i~~~l~~~ 165 (1250)
.+++++||++|.| +.+|++.+.+.++.+
T Consensus 155 ~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 155 KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred CcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 2679999999774 889999999877754
No 392
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.56 E-value=2.6e-16 Score=188.40 Aligned_cols=149 Identities=20% Similarity=0.318 Sum_probs=116.1
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
.|+|+++|++|+|||||+++|.+.... ....+|+|.+.....+.+++..++||||||+.... ......+.
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~---------~~~~~~~~ 73 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFT---------SMRARGAQ 73 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCT---------TSBCSSSB
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHH---------HHHHHHHh
Confidence 478999999999999999999875432 44567888887776777788899999999986443 22334577
Q ss_pred cCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCc--cc-hhHHh-------cC-CCCcEecccccCCc
Q psy17091 82 ESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS--IS-LDFYE-------LG-IGNPHIISALYGNG 150 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~--~~-~~~~~-------~~-~~~~~~iSA~~g~g 150 (1250)
.+|++++|+|+.++..++..+.+..++..+.|+++++||+|+.... .. .++.. .+ ..+++++||++|.|
T Consensus 74 ~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 74 ATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp SCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred hCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 8999999999999888888887888888899999999999997532 11 11111 11 12679999999999
Q ss_pred hhHHHHHHHH
Q psy17091 151 IKNFLENILT 160 (1250)
Q Consensus 151 i~~L~~~i~~ 160 (1250)
+++|++.+..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999864
No 393
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.56 E-value=8.4e-15 Score=177.62 Aligned_cols=142 Identities=25% Similarity=0.328 Sum_probs=107.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCc------------------------------ccccCCCcceeeeEEEEEECCEEE
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDA------------------------------LVANYPGLTRDRHYGEGYIGKKSF 52 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~------------------------------~v~~~~~~T~~~~~~~~~~~~~~~ 52 (1250)
.+|+++|++|+|||||+|+|++.... .....+|+|.+.....+...+..+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 48999999999999999999865221 123346899999998888889999
Q ss_pred EEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCC-------CChhhHHHHHHHHhcCC-CEEEEEeCCCCC
Q psy17091 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG-------LVEQDKLITNFLRKSGQ-PIVLVINKSENI 124 (1250)
Q Consensus 53 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~-------~~~~~~~~~~~l~~~~~-p~ilv~NK~D~~ 124 (1250)
.||||||+. ++...+..++..+|++|+|+|++++ ...+..+...++...+. |+++|+||+|+.
T Consensus 114 ~iiDTPG~~---------~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 114 TIVDAPGHR---------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp EEECCCCCG---------GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred EEEECCCcH---------HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 999999986 4556777788999999999999986 34566667777777674 599999999997
Q ss_pred CCccc---------hhHH-hcCC----CCcEecccccCCchhH
Q psy17091 125 NSSIS---------LDFY-ELGI----GNPHIISALYGNGIKN 153 (1250)
Q Consensus 125 ~~~~~---------~~~~-~~~~----~~~~~iSA~~g~gi~~ 153 (1250)
+.... .+++ ..++ .+++++||++|.|+++
T Consensus 185 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 185 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 63221 1111 3343 2569999999999985
No 394
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.7e-15 Score=184.32 Aligned_cols=143 Identities=24% Similarity=0.339 Sum_probs=111.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCccccc------------------------------CCCcceeeeEEEEEECCEEE
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN------------------------------YPGLTRDRHYGEGYIGKKSF 52 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~------------------------------~~~~T~~~~~~~~~~~~~~~ 52 (1250)
.+|+++|++|||||||+|+|++....+... .+|+|.+.....+...+..+
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~ 247 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 247 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceE
Confidence 489999999999999999999875443322 37899999998898899999
Q ss_pred EEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCC-------CChhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q psy17091 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG-------LVEQDKLITNFLRKSGQP-IVLVINKSENI 124 (1250)
Q Consensus 53 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~-------~~~~~~~~~~~l~~~~~p-~ilv~NK~D~~ 124 (1250)
.||||||+. .+...+..++..+|++|+|+|++.+ ...+..+...++...+.| +++|+||+|+.
T Consensus 248 ~iiDTPG~e---------~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 248 TIVDAPGHR---------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp EEEECCSSS---------CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred EEEECCCCc---------ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 999999986 4566777788999999999999864 334556666667766755 99999999998
Q ss_pred CCccc---------hhHH-hcCC----CCcEecccccCCchhHH
Q psy17091 125 NSSIS---------LDFY-ELGI----GNPHIISALYGNGIKNF 154 (1250)
Q Consensus 125 ~~~~~---------~~~~-~~~~----~~~~~iSA~~g~gi~~L 154 (1250)
+.... .++. ..|+ .+++++||++|.|+.++
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 63221 1121 3343 26799999999999865
No 395
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.55 E-value=3.7e-14 Score=178.49 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=93.9
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCccee-----------ccC------CCCcceeeEEEEEEEcC-------eeEEEEe
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI-----------TYD------TPGTTRDSIKSLFEYNN-------KKYILID 236 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~-----------~~~------~~gtT~~~~~~~~~~~~-------~~~~liD 236 (1250)
+..+|+|+|++|+|||||+++|+...... ..+ ..|+|.......+.+++ ..++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45899999999999999999997431110 111 35777777777788877 8999999
Q ss_pred cCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCc
Q psy17091 237 TAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH 308 (1250)
Q Consensus 237 TpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~ 308 (1250)
|||+.++. .....+++.+|++|+|+|++++.+.+...++..+...++|+++|+||+|+...
T Consensus 89 TPG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVDFT-----------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccchH-----------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 99996542 12345678899999999999999999999999998899999999999998753
No 396
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.55 E-value=5.7e-15 Score=171.92 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=108.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCc-----ccccCCC----------------------cceee--------------
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDA-----LVANYPG----------------------LTRDR-------------- 40 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~-----~v~~~~~----------------------~T~~~-------------- 40 (1250)
.|+|+++|.+|||||||+|+|++.+.. ++...|+ +|++.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999998754 4455555 33320
Q ss_pred ---------eEEEEEE-CCEEEEEEecCCCCcch----hhHHHHHHHHHHHHHhhcCC-EEEEEEeCCCCCChhhH-HHH
Q psy17091 41 ---------HYGEGYI-GKKSFIIIDTGGFEPEV----KKGIMHEMTKQTKQAIIESD-IIIFIVDGRQGLVEQDK-LIT 104 (1250)
Q Consensus 41 ---------~~~~~~~-~~~~~~liDTpG~~~~~----~~~~~~~~~~~~~~~~~~ad-~il~v~D~~~~~~~~~~-~~~ 104 (1250)
....+.. ++..+.||||||+.... .....+.+...+..++..++ ++++|+|+...+...+. .++
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 0011111 24689999999986421 22344466667777776554 66677788766665554 366
Q ss_pred HHHHhcCCCEEEEEeCCCCCCCcc-chhHH-------hcCCCCcEecccccCCchhHHHHHHHH
Q psy17091 105 NFLRKSGQPIVLVINKSENINSSI-SLDFY-------ELGIGNPHIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 105 ~~l~~~~~p~ilv~NK~D~~~~~~-~~~~~-------~~~~~~~~~iSA~~g~gi~~L~~~i~~ 160 (1250)
+.+...+.|+++|+||+|+.+... ..+.. ..++..++++||+++.|++++++.+.+
T Consensus 191 ~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 191 KEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 666667899999999999976543 22222 123335688999999999999999875
No 397
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.55 E-value=2.8e-14 Score=159.04 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=96.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLK 260 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~ 260 (1250)
+.++|+++|.+|||||||+|+|++.+...+++.+++|.+.....+.+++..+.||||||+.+.....+.. +......-
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~--~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQA--LELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHH--HHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHH--HHHHHHHH
Confidence 4799999999999999999999998887888999999999989999999999999999997765332211 11111111
Q ss_pred hhccCcEEEEEecCCC-CCCHHHHHHHHHHHHc-C----CcEEEEEeccccCC
Q psy17091 261 SILEANVVILLLDAQQ-NISAQDINIANFIYES-G----RSLIVCVNKWDSII 307 (1250)
Q Consensus 261 ~~~~ad~vllviD~~~-~~~~~d~~~~~~~~~~-~----~p~iiv~NK~Dl~~ 307 (1250)
....+|++++|+|++. .++..+..+++.+.+. + +|+++|+||+|+.+
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2247899999977654 4677777888877763 2 49999999999963
No 398
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.54 E-value=4.3e-16 Score=192.20 Aligned_cols=152 Identities=24% Similarity=0.261 Sum_probs=90.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCccc------------------------------ccCCCcceeeeEEEEEECCEEE
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV------------------------------ANYPGLTRDRHYGEGYIGKKSF 52 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v------------------------------~~~~~~T~~~~~~~~~~~~~~~ 52 (1250)
.+|+++|++|+|||||+|+|++....+. ...+|+|++.....+.+++..+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i 257 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEE
Confidence 4799999999999999999975321111 1257899999998888889999
Q ss_pred EEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCC-------ChhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q psy17091 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL-------VEQDKLITNFLRKSGQP-IVLVINKSENI 124 (1250)
Q Consensus 53 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~-------~~~~~~~~~~l~~~~~p-~ilv~NK~D~~ 124 (1250)
.||||||+.... ..+..++..+|++|+|+|++++. ..+..+...++...++| +|+|+||+|+.
T Consensus 258 ~iiDTPGh~~f~---------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 258 EIGDAPGHRDFI---------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp -CCEEESSSEEE---------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred EEEECCChHHHH---------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 999999987432 22334567899999999998753 66677777788888887 99999999997
Q ss_pred CCccc---------hhHH--hcCCC----CcEecccccCCchh--------------HHHHHHHHhhC
Q psy17091 125 NSSIS---------LDFY--ELGIG----NPHIISALYGNGIK--------------NFLENILTIEL 163 (1250)
Q Consensus 125 ~~~~~---------~~~~--~~~~~----~~~~iSA~~g~gi~--------------~L~~~i~~~l~ 163 (1250)
+.... .+++ ..|+. +++++||++|.|+. .|++.|...++
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 63211 1222 23443 57999999999998 78888877655
No 399
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.54 E-value=5.6e-15 Score=171.99 Aligned_cols=228 Identities=15% Similarity=0.114 Sum_probs=157.9
Q ss_pred chhhcccC-HHHHHHHhhcCccCCCeeeEEEEcCC-CceEEEEEeC--------CCeEEEEEeccCCCceeeeecccCCc
Q psy17091 558 FNKMTDLS-MSLRKKLKNSVYIKAPHIMSDQISFD-GTRKWIFHVK--------KNIIETVFIPEKNRNTLCISTQVGCA 627 (1250)
Q Consensus 558 ~~~~~~~~-~~~r~~l~~~~~~~~~~~~~~~~~~d-~t~k~l~~~~--------~~~ve~v~~~~~~~~t~c~ssq~GC~ 627 (1250)
|++|+|++ +.+++++.+...++..+...-..+.| ++.++|+++. |+.|-.. .-|+..-||+
T Consensus 2 ~~~m~~~~~~~i~~k~~~~~~l~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~~~g~~v~~~---------~~i~~t~~C~ 72 (350)
T 3t7v_A 2 IQKMALDEFDSLGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFLN---------CFIYFSTYCK 72 (350)
T ss_dssp ----------CHHHHHHTTCCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHTTEEEEE---------EEEEEECCCC
T ss_pred hhhHhHHHHHHHHHHHHcCCCCCHHHHHHHhcCCChhHHHHHHHHHHHHHHHHCCCEEEEE---------EeeecCCCcC
Confidence 79999999 88999998877776655554444444 4777787775 5444321 1144456899
Q ss_pred ccccccccCCC-Cc-ccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCc-cCCC--HHHHHHHHHHhh
Q psy17091 628 INCIFCSTGRQ-GF-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE-PLLN--YKSTIGALKLIL 702 (1250)
Q Consensus 628 ~~C~fC~t~~~-~~-~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GE-pl~n--~~~v~~~~~~~~ 702 (1250)
++|.||+.... +. ...++++||++++..+.+ ..++.|+|.| || |+.+ ++.+.+.++.++
T Consensus 73 ~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~---------------~G~~~i~l~g-Ge~p~~~~~~~~~~~l~~~ik 136 (350)
T 3t7v_A 73 NQCSFCYYNCRNEINRYRLTMEEIKETCKTLKG---------------AGFHMVDLTM-GEDPYYYEDPNRFVELVQIVK 136 (350)
T ss_dssp CCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTT---------------SCCSEEEEEE-CCCHHHHHSTHHHHHHHHHHH
T ss_pred CCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHH---------------CCCCEEEEee-CCCCccccCHHHHHHHHHHHH
Confidence 99999995433 22 224899999999875432 2367888866 88 9874 899999999998
Q ss_pred cCCCCCCCCceEEEEecCch-hH-HHHhhhhCCCe-EEEEccCCChhhhhccCCCCCCCCHHHHHHHHHHHHhhCCCceE
Q psy17091 703 SDHAYGLSRRHVILSTSGII-PM-IDKLAQECPVE-LAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMI 779 (1250)
Q Consensus 703 ~~~~~~~~~~~itvsT~g~~-~~-i~~~~~~~~~~-la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~v 779 (1250)
+..| .+++++ .|.. +. +++|.+. ++. +.+++++.+++.|+++.| +++.++.+++++... +.| +
T Consensus 137 ~~~~-----i~i~~s-~g~~~~e~l~~L~~a-G~~~i~i~lEt~~~~~~~~i~~---~~~~~~~l~~i~~a~-~~G---i 202 (350)
T 3t7v_A 137 EELG-----LPIMIS-PGLMDNATLLKAREK-GANFLALYQETYDTELYRKLRV---GQSFDGRVNARRFAK-QQG---Y 202 (350)
T ss_dssp HHHC-----SCEEEE-CSSCCHHHHHHHHHT-TEEEEECCCBCSCHHHHHHHST---TCCHHHHHHHHHHHH-HHT---C
T ss_pred hhcC-----ceEEEe-CCCCCHHHHHHHHHc-CCCEEEEeeecCCHHHHHHhCC---CCCHHHHHHHHHHHH-HcC---C
Confidence 6533 456664 4543 33 5555543 332 557999999999999976 589999999997654 333 3
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhhcCCCccc-eeEeeeccCCCCCCCCC
Q psy17091 780 TFEYCMLHGINDTDIHAIELISLMRKNKILTS-CKINLIPFNCFPNSNLI 828 (1250)
Q Consensus 780 ~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~-~~vnlip~n~~~~~~~~ 828 (1250)
.+...+|-|+++++++..+++++++. +. ..|++.||+|.++.++.
T Consensus 203 ~v~~~~i~Glget~e~~~~~l~~l~~----l~~~~v~~~~f~p~~gT~l~ 248 (350)
T 3t7v_A 203 CVEDGILTGVGNDIESTILSLRGMST----NDPDMVRVMTFLPQEGTPLE 248 (350)
T ss_dssp EEEEEEEESSSCCHHHHHHHHHHHHH----TCCSEEEEEECCCCTTSTTT
T ss_pred eEccceEeecCCCHHHHHHHHHHHHh----CCCCEEEecceeeCCCCcCc
Confidence 46668899999999999999999999 64 46999999999887764
No 400
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.54 E-value=1.3e-14 Score=178.70 Aligned_cols=159 Identities=20% Similarity=0.267 Sum_probs=102.9
Q ss_pred ceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcc-eeeEEE------EEEE----cCeeEEEEecCCCCCCCcchh
Q psy17091 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTT-RDSIKS------LFEY----NNKKYILIDTAGIRRRNKTFE 248 (1250)
Q Consensus 180 ~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT-~~~~~~------~~~~----~~~~~~liDTpG~~~~~~~~~ 248 (1250)
...+||+++|.+|||||||+|+|++.... . ....|. .+.... .+.. .+..+.+|||||+......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~-~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~-- 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD-P-KESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS-- 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC-C-CCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH--
Confidence 34799999999999999999999986532 1 222221 221111 1111 2468999999998554321
Q ss_pred hHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcC--CcEEEEEeccccCCccchHHHHHHHHHHhccCC
Q psy17091 249 VIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESG--RSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLS 326 (1250)
Q Consensus 249 ~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~--~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~ 326 (1250)
...+++.+|++++|+|++.. +....++..+.+.+ +|+++|+||+|+.+..... .+.+++.+...+
T Consensus 115 ---------~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~--~~~~~~~~~~~~ 181 (535)
T 3dpu_A 115 ---------HQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE--QKKINERFPAIE 181 (535)
T ss_dssp ---------CHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC--HHHHHHHCGGGT
T ss_pred ---------HHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC--HHHHHHHHHhcC
Confidence 11345779999999999876 56667777777754 9999999999997643321 233444444333
Q ss_pred CCeEEEeecCCCCChHHHHHHHHHHHhhcc
Q psy17091 327 FAMFNFISAIKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 327 ~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
.+++++||++|.|++++++.+.+.+....
T Consensus 182 -~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 182 -NRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp -TCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred -CceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 57999999999999999999998876543
No 401
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.53 E-value=3.4e-14 Score=176.46 Aligned_cols=159 Identities=17% Similarity=0.165 Sum_probs=113.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCC-----------------------------------------------
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYP----------------------------------------------- 34 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~----------------------------------------------- 34 (1250)
.|+|+++|.+|+|||||+|+|+|.+...++..+
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 489999999999999999999997652222221
Q ss_pred ---CcceeeeEEEEEE-CCEEEEEEecCCCCcch----hhHHHHHHHHHHHHHh-hcCCEEEEEEeCCCCCChhhH-HHH
Q psy17091 35 ---GLTRDRHYGEGYI-GKKSFIIIDTGGFEPEV----KKGIMHEMTKQTKQAI-IESDIIIFIVDGRQGLVEQDK-LIT 104 (1250)
Q Consensus 35 ---~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~----~~~~~~~~~~~~~~~~-~~ad~il~v~D~~~~~~~~~~-~~~ 104 (1250)
+++.+.....+.. +..++.||||||+.... ...+.+.+...+..++ ..+|++|+|+|++.+....+. .++
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll 210 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 210 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence 1122222222222 23468999999987521 2233445555555555 578999999999988777776 688
Q ss_pred HHHHhcCCCEEEEEeCCCCCCCccc-hhHH-------hcCCCCcEecccccCCchhHHHHHHHH
Q psy17091 105 NFLRKSGQPIVLVINKSENINSSIS-LDFY-------ELGIGNPHIISALYGNGIKNFLENILT 160 (1250)
Q Consensus 105 ~~l~~~~~p~ilv~NK~D~~~~~~~-~~~~-------~~~~~~~~~iSA~~g~gi~~L~~~i~~ 160 (1250)
+++...++|+++|+||+|+.+.... .+.. ..++.+++++||++|.|+++|.+.+.+
T Consensus 211 ~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 211 KEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 8888888999999999999865443 2221 124446789999999999999999986
No 402
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.53 E-value=6.8e-14 Score=175.37 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=100.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCccee-----------ccC------CCCcceeeEEEEEEEcCeeEEEEecCCCCCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVI-----------TYD------TPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~-----------~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 243 (1250)
+..+|+|+|++|+|||||+++|++..... ..+ ..|+|.......+.+++..+++|||||+.++
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 35789999999999999999998432210 001 2467777777788888999999999999432
Q ss_pred CcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHh
Q psy17091 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL 322 (1250)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l 322 (1250)
. .....+++.+|++++|+|+++++..+...++..+...++|+++|+||+|+. ....+..+++.+.+
T Consensus 88 ----------~-~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~--~~~~~~~~~l~~~l 153 (665)
T 2dy1_A 88 ----------V-GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG--GDYYALLEDLRSTL 153 (665)
T ss_dssp ----------H-HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC--CCHHHHHHHHHHHH
T ss_pred ----------H-HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh--hhHHHHHHHHHHHh
Confidence 2 234567788999999999999999999999999999999999999999997 33444445555443
No 403
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.53 E-value=7.3e-15 Score=163.01 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=99.1
Q ss_pred ceeeEEEEEeCC---------CChhhHHHHHHhCC--cceeccCCCCc-ceeeEEEE----------------EEEcCee
Q psy17091 180 IEYIKVAIVGKP---------NVGKSTLINSLLGE--NRVITYDTPGT-TRDSIKSL----------------FEYNNKK 231 (1250)
Q Consensus 180 ~~~~~i~ivG~~---------nvGKSSLin~l~~~--~~~~~~~~~gt-T~~~~~~~----------------~~~~~~~ 231 (1250)
...+||+++|.+ |||||||+|+|++. ........+++ +.+..... +.-....
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 346999999999 99999999999984 22333333333 23321111 1112346
Q ss_pred EEEEe------cCCCCCCCcchhhHHHHHHHH--------HHHhh---------------------ccCcEEEEEecCCC
Q psy17091 232 YILID------TAGIRRRNKTFEVIEKFSVIK--------TLKSI---------------------LEANVVILLLDAQQ 276 (1250)
Q Consensus 232 ~~liD------TpG~~~~~~~~~~~e~~~~~~--------~~~~~---------------------~~ad~vllviD~~~ 276 (1250)
+.+|| |||........ +..+.... ...++ ++||++++|+|+++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~--~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTA--LQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGG--CCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEccccccccccccccccc--cccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 77787 66664332110 00110000 00111 26999999999998
Q ss_pred C--CCHHHHH-HHHHHH----HcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHHHHHH
Q psy17091 277 N--ISAQDIN-IANFIY----ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESIN 349 (1250)
Q Consensus 277 ~--~~~~d~~-~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~ 349 (1250)
. .+..... ++..+. ..++|+++|+||+|+.+.... ++..+........+++++||++|.|++++|+++.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 6 5655432 333333 247999999999999654332 2333333222346899999999999999999997
Q ss_pred HHH
Q psy17091 350 HVY 352 (1250)
Q Consensus 350 ~~~ 352 (1250)
+.+
T Consensus 251 ~~l 253 (255)
T 3c5h_A 251 QLI 253 (255)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 404
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.52 E-value=7.2e-14 Score=148.87 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=108.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe--eEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK--KYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..++|+++|.+|||||||+|+|++...... ..|.++.+.....+.++|. .+.+|||||+.+.... .
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~-----------~ 71 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI-----------T 71 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC-----------C
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh-----------h
Confidence 368999999999999999999998764333 3344455566677788876 4567999998543211 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
..+++.+|++++|+|++...+..+. .++..+.. .+.|+++|+||+|+.+.... ......+... ...+++.+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~----~~~~~~d~ 147 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK----NNLSFIET 147 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH----TTCEEEEC
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHH----cCCeEEEE
Confidence 1344678999999999886544433 23343433 46899999999999753221 1112222222 23588999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q psy17091 334 SAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~~~~ 354 (1250)
||+++.|++++++.+.+.+..
T Consensus 148 Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999877643
No 405
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.52 E-value=9.7e-15 Score=169.08 Aligned_cols=155 Identities=23% Similarity=0.247 Sum_probs=95.8
Q ss_pred eeEEEEEeCCCChhhHHHHHHhC------CcceeccCCC-------------------------------------Ccce
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLG------ENRVITYDTP-------------------------------------GTTR 218 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~------~~~~~~~~~~-------------------------------------gtT~ 218 (1250)
...|+|+|.||||||||+|+|++ .+..+....| |+|+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 57899999999999999999985 2222332222 3333
Q ss_pred eeEEEE--EEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcE
Q psy17091 219 DSIKSL--FEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSL 296 (1250)
Q Consensus 219 ~~~~~~--~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~ 296 (1250)
+..... +...+.++.++||||+.... ......+|++++|+|++.+...+. +...+ ...|.
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~~--------------~~l~~~~d~vl~V~d~~~~~~~~~--i~~~i--l~~~~ 215 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQSE--------------FAVADMVDMFVLLLPPAGGDELQG--IKRGI--IEMAD 215 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--CH--------------HHHHTTCSEEEEEECCC----------------CCSCS
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchhh--------------hhHHhhCCEEEEEEcCCcchhHHH--hHHHH--HhcCC
Confidence 221111 11356789999999985321 112468999999999987632221 11112 35789
Q ss_pred EEEEeccccCCccchHHHHHHHHHHhccC------CCCeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 297 IVCVNKWDSIIHNQRKIIKNNIKKKLNFL------SFAMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 297 iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~------~~~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
++|+||+|+.+........+.+...+... ...+++++||++|.|+++|+++|.+.+..
T Consensus 216 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 216 LVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp EEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999999975433222333343333221 14689999999999999999999887643
No 406
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.52 E-value=6.1e-15 Score=181.16 Aligned_cols=151 Identities=26% Similarity=0.337 Sum_probs=109.9
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCC-CcceeeeEEEEEEC------------------CEEEEEEecCCCCc
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYP-GLTRDRHYGEGYIG------------------KKSFIIIDTGGFEP 62 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~-~~T~~~~~~~~~~~------------------~~~~~liDTpG~~~ 62 (1250)
.|+|+++|++|+|||||+|+|++... ....+ ++|.+.......+. ...++||||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 47999999999999999999997642 22333 56655443333321 12599999999875
Q ss_pred chhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCcc--------------
Q psy17091 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI-------------- 128 (1250)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~-------------- 128 (1250)
.. .....++..+|++|+|+|+++++..+..+..++++..+.|+++|+||+|+.....
T Consensus 83 F~---------~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~ 153 (594)
T 1g7s_A 83 FT---------TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ 153 (594)
T ss_dssp CT---------TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred HH---------HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHh
Confidence 43 1223456789999999999999988888888888889999999999999864211
Q ss_pred --------------c-hhHHhcCC--------------CCcEecccccCCchhHHHHHHHHhhC
Q psy17091 129 --------------S-LDFYELGI--------------GNPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 129 --------------~-~~~~~~~~--------------~~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
. .++...++ -+++++||++|.|+++|++++...++
T Consensus 154 ~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 11112232 15789999999999999999987664
No 407
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.52 E-value=6.1e-14 Score=149.43 Aligned_cols=151 Identities=24% Similarity=0.175 Sum_probs=107.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCE--EEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|++|||||||+|+|++.... ....|+++.+...+.+.++|. .+.+|||||.... ......++
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~---------~~~~~~~~ 75 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY---------RRITSAYY 75 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCC-C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT---------TCCCHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCchhh---------hhhhHHHH
Confidence 58999999999999999999988654 334566667777788888885 5678999996522 12234456
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..+|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+.+.... ..+. ..++ .++.+||+++.|
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~~d~Sal~~~~ 154 (199)
T 2f9l_A 76 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIETSALDSTN 154 (199)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 78999999999886433222 123333333 36789999999999754332 2222 2333 567899999999
Q ss_pred hhHHHHHHHHhhCC
Q psy17091 151 IKNFLENILTIELP 164 (1250)
Q Consensus 151 i~~L~~~i~~~l~~ 164 (1250)
++++++.+.+.+..
T Consensus 155 i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 155 VEEAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 408
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.52 E-value=1.7e-14 Score=173.23 Aligned_cols=142 Identities=22% Similarity=0.251 Sum_probs=106.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCc------------------------cccc------CCCcceeeeEEEEEECCEEE
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDA------------------------LVAN------YPGLTRDRHYGEGYIGKKSF 52 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~------------------------~v~~------~~~~T~~~~~~~~~~~~~~~ 52 (1250)
.+|+++|++|+|||||+|+|++.... .+.+ ..|+|.+.....+...+..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 48999999999999999999864110 0111 36889988888888888999
Q ss_pred EEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCh-------hhHHHHHHHHhcCCC-EEEEEeCCCCC
Q psy17091 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVE-------QDKLITNFLRKSGQP-IVLVINKSENI 124 (1250)
Q Consensus 53 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~-------~~~~~~~~l~~~~~p-~ilv~NK~D~~ 124 (1250)
.||||||+. .+...+..++..+|++|+|+|++++..+ +..+...++...+.| +++|+||+|+.
T Consensus 88 ~iiDtPGh~---------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 88 TVIDAPGHR---------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp EEEECCCCT---------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred EEEECCCcH---------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 999999976 4556677788999999999999875433 445555666667776 89999999997
Q ss_pred CCcc-----c----hhHH-hcCC----CCcEecccccCCchhH
Q psy17091 125 NSSI-----S----LDFY-ELGI----GNPHIISALYGNGIKN 153 (1250)
Q Consensus 125 ~~~~-----~----~~~~-~~~~----~~~~~iSA~~g~gi~~ 153 (1250)
+... . .++. ..++ .+++++||++|.|+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 4211 1 1222 3454 3689999999999864
No 409
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.51 E-value=1.5e-13 Score=145.40 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=108.5
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeE--EEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~--~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..++|+++|.+|||||||+|+|.+...... ..|.++.+.....+.+++..+ .+|||||+.+.... .
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~-----------~ 95 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI-----------T 95 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC-----------C
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhh-----------h
Confidence 469999999999999999999998764433 445556666667788888755 46999998654311 1
Q ss_pred HHhhccCcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCcEEEEEeccccCCccch-HHHHHHHHHHhccCCCCeEEEe
Q psy17091 259 LKSILEANVVILLLDAQQNISAQDI-NIANFIYE---SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSFAMFNFI 333 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~~~~~~~d~-~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~iv~i 333 (1250)
..+++.++++++|+|.+...+.++. .++..+.+ .+.|+++|+||+|+.+.... ......+... ...+++.+
T Consensus 96 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~----~~~~~ld~ 171 (191)
T 1oix_A 96 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK----NGLSFIET 171 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH----TTCEEEEC
T ss_pred HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCEEEEE
Confidence 2345778999999999875443332 23343333 36899999999999753221 1222223222 23688999
Q ss_pred ecCCCCChHHHHHHHHHH
Q psy17091 334 SAIKLNNINSFMESINHV 351 (1250)
Q Consensus 334 SA~~g~gv~~l~~~i~~~ 351 (1250)
||+++.|++++++.+.+.
T Consensus 172 Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 172 SALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999998764
No 410
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.50 E-value=6.1e-14 Score=177.99 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=114.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCC-----Cc----------ccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSR-----DA----------LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKG 67 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~-----~~----------~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 67 (1250)
.+|+++|++|+|||||+|+|++.. .. ......|+|.+.....+...+..+.||||||+.
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe------ 370 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA------ 370 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH------
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH------
Confidence 479999999999999999998741 00 012356778877666666678899999999965
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCC-EEEEEeCCCCCCCccc--------hhHH-hcCC
Q psy17091 68 IMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP-IVLVINKSENINSSIS--------LDFY-ELGI 137 (1250)
Q Consensus 68 ~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p-~ilv~NK~D~~~~~~~--------~~~~-~~~~ 137 (1250)
++...+..++..+|++|+|+|++++...+..++...++..++| +++|+||+|+.+.... .++. ..++
T Consensus 371 ---dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 371 ---DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp ---HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 5566777888999999999999998888887777888888999 7899999999753221 1222 3343
Q ss_pred ----CCcEecccccC--------CchhHHHHHHHHhhCCc
Q psy17091 138 ----GNPHIISALYG--------NGIKNFLENILTIELPY 165 (1250)
Q Consensus 138 ----~~~~~iSA~~g--------~gi~~L~~~i~~~l~~~ 165 (1250)
.+++++||++| .|+++|++.+.+.++.+
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 36799999999 57999999999877643
No 411
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.50 E-value=1e-13 Score=168.52 Aligned_cols=115 Identities=17% Similarity=0.279 Sum_probs=89.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcc---------------cc------cCCCcceeeeEEEEEECCEEEEEEecCCCC
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL---------------VA------NYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~---------------v~------~~~~~T~~~~~~~~~~~~~~~~liDTpG~~ 61 (1250)
.+|+++|++|+|||||+|+|++....+ +. ...|+|.+.....+.+++..+.||||||+.
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 589999999999999999999642211 11 245677777777788999999999999986
Q ss_pred cchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC
Q psy17091 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126 (1250)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~ 126 (1250)
+. ...+..++..+|++|+|+|++++.......+...++..++|+++|+||+|+...
T Consensus 94 df---------~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 94 DF---------SEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TC---------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred hH---------HHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 43 245666789999999999999988888777888887789999999999998654
No 412
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.49 E-value=4.5e-14 Score=158.75 Aligned_cols=158 Identities=14% Similarity=0.194 Sum_probs=102.0
Q ss_pred EEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhc
Q psy17091 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSIL 263 (1250)
Q Consensus 184 ~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~ 263 (1250)
||+++|..|||||||++++.+..........+.|.......+. ...++.+|||||+.+.... .+ ....+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~-----~l---~~~~yyr 71 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP-----SY---DSERLFK 71 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC-----SH---HHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch-----hh---hhhhhcc
Confidence 6899999999999999998765322211222333333222331 2468999999999765310 00 1235679
Q ss_pred cCcEEEEEecCCCCCCHHHHHHHH----HHHH--cCCcEEEEEeccccCCccch----HHHHHHHHHHhccC----CCCe
Q psy17091 264 EANVVILLLDAQQNISAQDINIAN----FIYE--SGRSLIVCVNKWDSIIHNQR----KIIKNNIKKKLNFL----SFAM 329 (1250)
Q Consensus 264 ~ad~vllviD~~~~~~~~d~~~~~----~~~~--~~~p~iiv~NK~Dl~~~~~~----~~~~~~l~~~l~~~----~~~~ 329 (1250)
+++++++|+|+++. .......+. .+.+ .+.|+++|+||+|+.++... ++..++..+.+... ...+
T Consensus 72 ~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~ 150 (331)
T 3r7w_B 72 SVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS 150 (331)
T ss_dssp TCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred CCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence 99999999999987 333333332 2222 47899999999999865432 22333333333332 3478
Q ss_pred EEEeecCCCCChHHHHHHHHHHH
Q psy17091 330 FNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 330 iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
++++||++ .+|.+.|..+.+.+
T Consensus 151 f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 151 FYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp EECCCSSS-SHHHHHHHHHHTTS
T ss_pred EEEeccCC-CcHHHHHHHHHHHH
Confidence 99999998 58999998886554
No 413
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.49 E-value=1.2e-13 Score=153.90 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=92.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHh--
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI-- 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~-- 80 (1250)
.+|+++|.+|||||||+|+|++...+.+++++++|.+.....+.+++..+.||||||+.+... ..+...+.+..++
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~--~~~~~~~~i~~~l~~ 114 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY--VNHQALELIKGFLVN 114 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE--ECHHHHHHHHHHTTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc--chHHHHHHHHHHHhc
Confidence 589999999999999999999998877889999999999989999999999999999865421 1112222222222
Q ss_pred hcCCEEEEEEeCCC-CCChhhHHHHHHHHhc-C----CCEEEEEeCCCCCCC
Q psy17091 81 IESDIIIFIVDGRQ-GLVEQDKLITNFLRKS-G----QPIVLVINKSENINS 126 (1250)
Q Consensus 81 ~~ad~il~v~D~~~-~~~~~~~~~~~~l~~~-~----~p~ilv~NK~D~~~~ 126 (1250)
..+|++|+|+|... .+...+..+.+.++.. + .|+++|+||+|+...
T Consensus 115 ~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 115 RTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp CEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred CCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 37899999987754 3555566677777652 2 499999999998643
No 414
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.49 E-value=5.1e-14 Score=177.20 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=111.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCc--------------ceeee---------------------------
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGL--------------TRDRH--------------------------- 41 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~--------------T~~~~--------------------------- 41 (1250)
++|+++|.+|||||||+|+|+|.+...++..|++ |++..
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l 149 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKL 149 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHH
Confidence 5899999999999999999999988778888877 33210
Q ss_pred ------------EEEEEECC----EEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHH-H
Q psy17091 42 ------------YGEGYIGK----KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLI-T 104 (1250)
Q Consensus 42 ------------~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~-~ 104 (1250)
...+.+.. ..+.||||||+.... .....+..++..+|++|||+|++.+.+..+... .
T Consensus 150 ~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~------~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~ 223 (695)
T 2j69_A 150 EQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE------ARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE 223 (695)
T ss_dssp HTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH------TCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH
T ss_pred hhccccccccceEEEEEccchhccCCeEEEECCCCCchh------hHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH
Confidence 00111111 358999999976322 234566778899999999999998877766543 3
Q ss_pred HHHHhcCCCEEEEEeCCCCCCCc-----c----------ch----hHHh-c-C-------CCCcEecccc----------
Q psy17091 105 NFLRKSGQPIVLVINKSENINSS-----I----------SL----DFYE-L-G-------IGNPHIISAL---------- 146 (1250)
Q Consensus 105 ~~l~~~~~p~ilv~NK~D~~~~~-----~----------~~----~~~~-~-~-------~~~~~~iSA~---------- 146 (1250)
+.+...+.|+++|+||+|+.... . .. .... . + ...++++||+
T Consensus 224 ~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 224 NYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp HHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred HHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 45555688999999999986542 0 10 0011 0 1 1257999999
Q ss_pred ----cCCchhHHHHHHHHhhC
Q psy17091 147 ----YGNGIKNFLENILTIEL 163 (1250)
Q Consensus 147 ----~g~gi~~L~~~i~~~l~ 163 (1250)
++.|++++++.+.+.+.
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHH
Confidence 99999999999987664
No 415
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.49 E-value=1.4e-13 Score=147.88 Aligned_cols=160 Identities=17% Similarity=0.212 Sum_probs=103.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCC-CcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcch-hhHHHHHHHHH---HH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV-KKGIMHEMTKQ---TK 77 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~-~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~---~~ 77 (1250)
.+|+++|++|||||||+|+|++.. .+.+.+.+|+|+... .+.+++ .+.+|||||+.... .....+.+... +.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 103 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYL 103 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHH
Confidence 479999999999999999999876 455677888887643 334444 68899999985321 00001122222 22
Q ss_pred HHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc-------hhHH-hcC-CCCcEecccccC
Q psy17091 78 QAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS-------LDFY-ELG-IGNPHIISALYG 148 (1250)
Q Consensus 78 ~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-------~~~~-~~~-~~~~~~iSA~~g 148 (1250)
.....++.+++++|++.+....+..+..++...+.|+++|.||+|+...... ..+. ..+ .-..+++||+++
T Consensus 104 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~ 183 (210)
T 1pui_A 104 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK 183 (210)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred HhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCC
Confidence 2335789999999998877766667778888889999999999998754221 1122 222 124579999999
Q ss_pred CchhHHHHHHHHhhCCc
Q psy17091 149 NGIKNFLENILTIELPY 165 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~~ 165 (1250)
.|++++++.+.+.+...
T Consensus 184 ~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 184 QGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp BSHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999998876543
No 416
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.48 E-value=1.2e-13 Score=154.60 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=93.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHH--h
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA--I 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~--~ 80 (1250)
++|+++|.+|||||||+|+|++.....+++.+++|.+........++..+.||||||+.+... +...+.+.+..+ .
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~--~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY--INDMALNIIKSFLLD 117 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE--ECHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc--chHHHHHHHHHHhhc
Confidence 589999999999999999999988777888999999988888888999999999999865321 011122222222 3
Q ss_pred hcCCEEEEEEeCCC-CCChhhHHHHHHHHhc-C----CCEEEEEeCCCCCCCc
Q psy17091 81 IESDIIIFIVDGRQ-GLVEQDKLITNFLRKS-G----QPIVLVINKSENINSS 127 (1250)
Q Consensus 81 ~~ad~il~v~D~~~-~~~~~~~~~~~~l~~~-~----~p~ilv~NK~D~~~~~ 127 (1250)
..+|++|+|+|... .+...+..+.+.+... + +|+++|+||+|+...+
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 47999999988754 4555666677766542 3 5999999999987544
No 417
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=160.27 Aligned_cols=167 Identities=14% Similarity=0.187 Sum_probs=90.2
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCC--------CCcceeeEEEEEEEcCe--eEEEEecCCCCCCC------
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDT--------PGTTRDSIKSLFEYNNK--KYILIDTAGIRRRN------ 244 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~--------~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~------ 244 (1250)
..++|+++|.+|+|||||+|+|++......... ++++.+.....+..++. .+.+|||||+.+..
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 368999999999999999999988655443222 23333333333444454 68899999995432
Q ss_pred -cchhhHHHHHHHHHHHhhc----------cCcEEEEEecC-CCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchH
Q psy17091 245 -KTFEVIEKFSVIKTLKSIL----------EANVVILLLDA-QQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRK 312 (1250)
Q Consensus 245 -~~~~~~e~~~~~~~~~~~~----------~ad~vllviD~-~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~ 312 (1250)
.....++.. ....+.... ++|+++++++. ..++...+..+++.+. .++|+|+|+||+|+.+.....
T Consensus 116 ~~i~~~i~~~-~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 116 KTIISYIDEQ-FERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CCTHHHHHHH-HHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHH
Confidence 111111110 001111111 23578888876 6678888877777663 679999999999998766555
Q ss_pred HHHHHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 313 IIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 313 ~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
.+.+.+.+.+... ..+++++||++|.+ ++.+..+.+.
T Consensus 194 ~~k~~i~~~~~~~-~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 194 RLKKRILDEIEEH-NIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp HHHHHHHHHTTCC--CCSCCCC----------CHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCEEeCCCcCCCc-chhHHHHHHH
Confidence 5556666666554 36899999999998 7666655443
No 418
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.48 E-value=8.5e-15 Score=170.43 Aligned_cols=156 Identities=23% Similarity=0.274 Sum_probs=102.5
Q ss_pred eeeEEEEEeCCCChhhHHHHHHh------CCcceeccCCCCcceeeE-----------------E---------------
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLL------GENRVITYDTPGTTRDSI-----------------K--------------- 222 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~------~~~~~~~~~~~gtT~~~~-----------------~--------------- 222 (1250)
+..+|+|+|.||||||||+|+|. |.+...+...|+++.... .
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 46789999999999999999996 444444444433332000 0
Q ss_pred -------EEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc
Q psy17091 223 -------SLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS 295 (1250)
Q Consensus 223 -------~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p 295 (1250)
..+...+..++||||||+... ....+..+|++++|+|++.+...+. +...+ ..+|
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~--------------~~~~~~~aD~vl~V~d~~~~~~~~~--l~~~~--~~~p 219 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQS--------------EVAVANMVDTFVLLTLARTGDQLQG--IKKGV--LELA 219 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSH--------------HHHHHTTCSEEEEEEESSTTCTTTT--CCTTS--GGGC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcH--------------HHHHHHhCCEEEEEECCCCCccHHH--HHHhH--hhcC
Confidence 001224678999999998431 1123478999999999876532221 11111 2369
Q ss_pred EEEEEeccccCCccchHHHHHHHHHHhccC-----C-CCeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 296 LIVCVNKWDSIIHNQRKIIKNNIKKKLNFL-----S-FAMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 296 ~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~-----~-~~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+++|+||+|+.+........+++...+... . ..|++++||++|.|+++|++++.+.+..
T Consensus 220 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 220 DIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999999999976544444555555544222 1 3689999999999999999999887654
No 419
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.48 E-value=3.7e-14 Score=169.58 Aligned_cols=142 Identities=23% Similarity=0.299 Sum_probs=99.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCccc------------------------------ccCCCcceeeeEEEEEECCEEE
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALV------------------------------ANYPGLTRDRHYGEGYIGKKSF 52 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v------------------------------~~~~~~T~~~~~~~~~~~~~~~ 52 (1250)
.+|+++|++|+|||||+|+|++....+. ...+|+|.+.....+++.+..+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 4899999999999999999986421110 1146889988888888888999
Q ss_pred EEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCC-------CChhhHHHHHHHHhcCC-CEEEEEeCCCCC
Q psy17091 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG-------LVEQDKLITNFLRKSGQ-PIVLVINKSENI 124 (1250)
Q Consensus 53 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~-------~~~~~~~~~~~l~~~~~-p~ilv~NK~D~~ 124 (1250)
.||||||+. ++...+..++..+|++|+|+|++++ ...+..+...+++..+. |+++|+||+|+.
T Consensus 87 ~iiDtpG~~---------~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 87 TIIDAPGHR---------DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp EECCCSSST---------THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred EEEECCCcH---------HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 999999987 3445677788999999999999986 45556666666676676 599999999997
Q ss_pred CCc--c-----c----hhHH-hcCC----CCcEecccccCCchhH
Q psy17091 125 NSS--I-----S----LDFY-ELGI----GNPHIISALYGNGIKN 153 (1250)
Q Consensus 125 ~~~--~-----~----~~~~-~~~~----~~~~~iSA~~g~gi~~ 153 (1250)
+.. . . .++. ..++ .+++++||++|.|+.+
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 631 1 1 2222 3343 2579999999999973
No 420
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.48 E-value=1.5e-14 Score=180.50 Aligned_cols=160 Identities=26% Similarity=0.286 Sum_probs=123.9
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcce-----------eccC------CCCcceeeEEEEEEEcCeeEEEEecCCCCCCCc
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRV-----------ITYD------TPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNK 245 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~-----------~~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 245 (1250)
.+|+|+|+.++|||||..+|+..... .+.+ ..|+|..+....+.|++..++|+||||+.++.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 36999999999999999999721111 1111 23788888888899999999999999998874
Q ss_pred chhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHh---
Q psy17091 246 TFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKL--- 322 (1250)
Q Consensus 246 ~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l--- 322 (1250)
..+.++++-+|++|+|+|+.+|+..|...+++.+.+.++|.++++||+|....+ .....+++++.+
T Consensus 82 ----------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~-~~~~~~~i~~~l~~~ 150 (638)
T 3j25_A 82 ----------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGID-LSTVYQDIKEKLSAE 150 (638)
T ss_dssp ----------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCC-SHHHHHHHHHTTCCC
T ss_pred ----------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCC-HHHHHHHHHHHhCCC
Confidence 334567788999999999999999999999999999999999999999986432 222222332222
Q ss_pred ---------------------------------------------------------ccCCCCeEEEeecCCCCChHHHH
Q psy17091 323 ---------------------------------------------------------NFLSFAMFNFISAIKLNNINSFM 345 (1250)
Q Consensus 323 ---------------------------------------------------------~~~~~~~iv~iSA~~g~gv~~l~ 345 (1250)
......|+++.||+++.|++.|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LL 230 (638)
T 3j25_A 151 IVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLI 230 (638)
T ss_dssp CCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHH
T ss_pred ccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHh
Confidence 12234688999999999999999
Q ss_pred HHHHHHHhh
Q psy17091 346 ESINHVYDS 354 (1250)
Q Consensus 346 ~~i~~~~~~ 354 (1250)
+.+.+.++.
T Consensus 231 d~i~~~~p~ 239 (638)
T 3j25_A 231 EVITNKFYS 239 (638)
T ss_dssp HHHHHSCCC
T ss_pred hhhhccccC
Confidence 998776544
No 421
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.48 E-value=2.7e-14 Score=162.13 Aligned_cols=189 Identities=19% Similarity=0.101 Sum_probs=115.5
Q ss_pred HHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCC
Q psy17091 17 TLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL 96 (1250)
Q Consensus 17 SL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~ 96 (1250)
+|+++++..........|++. +........++ .+.+||| ++.. ......+++++|++|+|+|++++.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~~~~-~~~iwD~--qer~---------~~l~~~~~~~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPDETG-SGVIENV--LHRK---------NLLTKPHVANVDQVILVVTVKMPE 98 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTT-CEEEEECCCSS-SEEEEEE--CCCS---------CEETTTTEESCCEEEEEECSSTTC
T ss_pred cEEEEEEcccccccCCCCCCc-cEEEEEEcCCC-eEEEEEE--cccc---------ceeeccccccCCEEEEEEeCCCCC
Confidence 455555544311012234333 43333322233 7899999 4422 122335789999999999998754
Q ss_pred C-hhh-HHHHHHHHhcCCCEEEEEeCCCCCCCcc---c---hhHHhcCCCCcEecccccCCchhHHHHHHHHhhCCcccc
Q psy17091 97 V-EQD-KLITNFLRKSGQPIVLVINKSENINSSI---S---LDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKF 168 (1250)
Q Consensus 97 ~-~~~-~~~~~~l~~~~~p~ilv~NK~D~~~~~~---~---~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~ 168 (1250)
. ... ..|...++..++|+++|+||+|+.+... . .+.+... ..++++||++|.|++++++.+.
T Consensus 99 ~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~l~--------- 168 (301)
T 1u0l_A 99 TSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEYLK--------- 168 (301)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHS---------
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHHhc---------
Confidence 2 221 2344444557899999999999976433 1 2222211 4789999999999999997652
Q ss_pred cccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCC-------CcceeeEEEEEEEcCeeEEEEecCCCC
Q psy17091 169 FKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-------GTTRDSIKSLFEYNNKKYILIDTAGIR 241 (1250)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~-------gtT~~~~~~~~~~~~~~~~liDTpG~~ 241 (1250)
.-.++++|++|||||||+|.|.|......+... .+|+.... +... ....++||||+.
T Consensus 169 -------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~~~-~~g~v~q~p~~~ 232 (301)
T 1u0l_A 169 -------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKFD-FGGYVVDTPGFA 232 (301)
T ss_dssp -------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EECT-TSCEEESSCSST
T ss_pred -------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--EEcC-CCCEEEECcCCC
Confidence 124899999999999999999987654443332 24443321 1121 234689999986
Q ss_pred CCC
Q psy17091 242 RRN 244 (1250)
Q Consensus 242 ~~~ 244 (1250)
...
T Consensus 233 ~~~ 235 (301)
T 1u0l_A 233 NLE 235 (301)
T ss_dssp TCC
T ss_pred ccC
Confidence 543
No 422
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.48 E-value=3.1e-14 Score=175.28 Aligned_cols=150 Identities=18% Similarity=0.206 Sum_probs=96.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEE------EEEE----CCEEEEEEecCCCCcchhhHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYG------EGYI----GKKSFIIIDTGGFEPEVKKGIMHEM 72 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~------~~~~----~~~~~~liDTpG~~~~~~~~~~~~~ 72 (1250)
.+|+++|.+|||||||+|+|++.+.. ....|++..+.... .+.. .+..+.+|||||++...
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~-------- 112 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH-------- 112 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT--------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH--------
Confidence 48999999999999999999987632 22222222222211 1111 25789999999976332
Q ss_pred HHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcC--CCEEEEEeCCCCCCCccc-h----hHH-hcCCCCcEecc
Q psy17091 73 TKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSG--QPIVLVINKSENINSSIS-L----DFY-ELGIGNPHIIS 144 (1250)
Q Consensus 73 ~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~--~p~ilv~NK~D~~~~~~~-~----~~~-~~~~~~~~~iS 144 (1250)
.....++..+|++|+|+|++.. .....+...+...+ .|+++|+||+|+...... . +.. ..+. +++++|
T Consensus 113 -~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vS 188 (535)
T 3dpu_A 113 -ASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIEN-RFHRIS 188 (535)
T ss_dssp -TTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTT-CEEECC
T ss_pred -HHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCC-ceEEEe
Confidence 1233456789999999999763 33455666676644 899999999999765543 1 122 2333 689999
Q ss_pred cccCCchhHHHHHHHHhhCCc
Q psy17091 145 ALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 145 A~~g~gi~~L~~~i~~~l~~~ 165 (1250)
|++|.|++++++.+.+.+...
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp C-----CTTHHHHHHHHHTCT
T ss_pred cCcccCHHHHHHHHHHHHhcc
Confidence 999999999999999877543
No 423
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.47 E-value=1.7e-13 Score=145.01 Aligned_cols=149 Identities=24% Similarity=0.186 Sum_probs=106.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEE--EEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKS--FIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
.+|+++|++|||||||+|+|++.... ....|+++.+...+.+.+++.. +.+|||||+.... ..+..++
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~---------~~~~~~~ 99 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR---------AITSAYY 99 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS---------CCCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh---------hhhHHHh
Confidence 48999999999999999999987654 3456777778888888888865 4569999986322 1233446
Q ss_pred hcCCEEEEEEeCCCCCChhh-HHHHHHHHh---cCCCEEEEEeCCCCCCCccc-----hhHH-hcCCCCcEecccccCCc
Q psy17091 81 IESDIIIFIVDGRQGLVEQD-KLITNFLRK---SGQPIVLVINKSENINSSIS-----LDFY-ELGIGNPHIISALYGNG 150 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~-~~~~~~l~~---~~~p~ilv~NK~D~~~~~~~-----~~~~-~~~~~~~~~iSA~~g~g 150 (1250)
..++.+++|+|..+..+... ..+...++. .+.|+++|+||+|+.+.... ..+. ..++ .++.+||+++.|
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~ld~Sald~~~ 178 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL-SFIETSALDSTN 178 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 78999999999876322211 123333332 35789999999998654332 2222 2333 567899999999
Q ss_pred hhHHHHHHHHhh
Q psy17091 151 IKNFLENILTIE 162 (1250)
Q Consensus 151 i~~L~~~i~~~l 162 (1250)
++++++.+.+.+
T Consensus 179 v~~l~~~l~~~i 190 (191)
T 1oix_A 179 VEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 424
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.47 E-value=1.1e-12 Score=152.00 Aligned_cols=179 Identities=19% Similarity=0.232 Sum_probs=134.3
Q ss_pred ceeeeecccCCcccccccccCCC--------CcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCcc
Q psy17091 616 NTLCISTQVGCAINCIFCSTGRQ--------GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEP 687 (1250)
Q Consensus 616 ~t~c~ssq~GC~~~C~fC~t~~~--------~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GEp 687 (1250)
..++++..-+|+++|.||..+.. ...+.++.+|+...+..+.+ ..+..|.|.| |||
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~---------------~g~~~i~~tG-GEP 77 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE---------------LGVKKIRITG-GEP 77 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH---------------TTCCEEEEES-SCG
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHH---------------CCCCEEEEeC-CCc
Confidence 47899999999999999987641 23356888887665554432 1256799999 999
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCceEEEEecCch--hHHHHhhhhCCCeEEEEccCCChhhhhccCCCCCCCCHHHHHH
Q psy17091 688 LLNYKSTIGALKLILSDHAYGLSRRHVILSTSGII--PMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELIL 765 (1250)
Q Consensus 688 l~n~~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~--~~i~~~~~~~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~ 765 (1250)
|++.+ +.+.++.+.+..+ ..++++.|+|.. +.+.+|.+.--..+.+||++.+++.++++.+. +..++.+++
T Consensus 78 ll~~~-l~~li~~~~~~~~----~~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~--~~~~~~v~~ 150 (340)
T 1tv8_A 78 LMRRD-LDVLIAKLNQIDG----IEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNR--NIKATTILE 150 (340)
T ss_dssp GGSTT-HHHHHHHHTTCTT----CCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSS--CCCHHHHHH
T ss_pred cchhh-HHHHHHHHHhCCC----CCeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCC--CCCHHHHHH
Confidence 99976 5699998887522 128999999975 22444444322357899999999999998542 237999999
Q ss_pred HHHHHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCccceeEeeeccCCCCCC
Q psy17091 766 ACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS 825 (1250)
Q Consensus 766 ~~~~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~~~~vnlip~n~~~~~ 825 (1250)
+++...+. +- +|.+.+++++|+|+. ++.+++++++. +...+.+|+|.|.+..
T Consensus 151 ~i~~l~~~-g~-~v~i~~vv~~g~n~~--ei~~~~~~~~~----~g~~~~~i~~~p~~~~ 202 (340)
T 1tv8_A 151 QIDYATSI-GL-NVKVNVVIQKGINDD--QIIPMLEYFKD----KHIEIRFIEFMDVGND 202 (340)
T ss_dssp HHHHHHHT-TC-EEEEEEEECTTTTGG--GHHHHHHHHHH----TTCCEEEEECCCBCSS
T ss_pred HHHHHHHC-CC-CEEEEEEEeCCCCHH--HHHHHHHHHHh----cCCeEEEEEeeEcCCC
Confidence 99877654 44 899999999999985 68999999998 5556777788887653
No 425
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.47 E-value=4.6e-14 Score=152.66 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=85.2
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceec--cCCCCcceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVIT--YDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKT 258 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~--~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~ 258 (1250)
..++|+++|.+|||||||+|+|++...... +..|+++.+. .+..+.+|||||+.+.. ..+..+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~---~~~~~~~---- 76 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLR---YKLSDYL---- 76 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGT---HHHHHHH----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHH---HHHHHHH----
Confidence 468999999999999999999998653221 2344444433 56789999999995432 1111111
Q ss_pred HHhhccCcEEEEEecCC-CC--CCHHHHHHHHHHHH------cCCcEEEEEeccccCCccchHHHHHHHHHHhc---cCC
Q psy17091 259 LKSILEANVVILLLDAQ-QN--ISAQDINIANFIYE------SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN---FLS 326 (1250)
Q Consensus 259 ~~~~~~ad~vllviD~~-~~--~~~~d~~~~~~~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~---~~~ 326 (1250)
...+..+|++++|+|++ +. +......+...+.. .++|+++|+||+|+.+.....+..+.+.+.+. ...
T Consensus 77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 156 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 156 (218)
T ss_dssp HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 12224489999999998 33 22222223232222 48999999999999876554433333322111 111
Q ss_pred CCeEEEeecCCCCC
Q psy17091 327 FAMFNFISAIKLNN 340 (1250)
Q Consensus 327 ~~~iv~iSA~~g~g 340 (1250)
..+++++||++|.+
T Consensus 157 ~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 157 KKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHC--------
T ss_pred hccccccccccccc
Confidence 24788899998875
No 426
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.47 E-value=2.5e-13 Score=170.84 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=88.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCc-----------cccc------CCCcceeeeEEEEEECCEEEEEEecCCCCcchh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDA-----------LVAN------YPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~-----------~v~~------~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 65 (1250)
++|+|+|++|+|||||+|+|+..... .+.+ ..++|.......+.+++..+.||||||+.+
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d--- 89 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD--- 89 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT---
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc---
Confidence 58999999999999999999842111 0111 457788877888889999999999999863
Q ss_pred hHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC
Q psy17091 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126 (1250)
Q Consensus 66 ~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~ 126 (1250)
+...+..++..+|++|+|+|++++.......+...+...+.|+++|+||+|+...
T Consensus 90 ------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 ------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred ------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 3455677788999999999999988888877777788889999999999998754
No 427
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.47 E-value=1.3e-13 Score=173.48 Aligned_cols=115 Identities=17% Similarity=0.210 Sum_probs=89.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcc-----------ccc------CCCcceeeeEEEEEECCEEEEEEecCCCCcchh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL-----------VAN------YPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~-----------v~~------~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 65 (1250)
++|+|+|++|+|||||+|+|++....+ +.+ .+++|.......+.+++..+.||||||+.+..
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 89 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT- 89 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH-
Confidence 589999999999999999998421111 112 46788888888889999999999999987433
Q ss_pred hHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC
Q psy17091 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126 (1250)
Q Consensus 66 ~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~ 126 (1250)
..+..+++.+|++|+|+|++++....+..+...+...++|+++|+||+|+...
T Consensus 90 --------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 90 --------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp --------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred --------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 34566788999999999999988888877778888889999999999998754
No 428
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.45 E-value=4.8e-13 Score=157.06 Aligned_cols=163 Identities=20% Similarity=0.243 Sum_probs=115.5
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC-eeEEEEecCCCCCCCcchhhHHHHHHHHHHHh
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKS 261 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~ 261 (1250)
-.|+|+|.||||||||+|+|++... .+.+++++|.++....+.+++ ..+.++||||+.........+. ...+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~----~~fl~~ 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLG----LEFLRH 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSC----HHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhh----HHHHHH
Confidence 4589999999999999999998754 456889999988888888776 7899999999965321110110 112355
Q ss_pred hccCcEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeec
Q psy17091 262 ILEANVVILLLDAQQNISAQDIN-IANFIYE-----SGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 262 ~~~ad~vllviD~~~~~~~~d~~-~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA 335 (1250)
+..++.+++++|++ .-...+.. +.+.+.. ..+|.++|+||+|+... +..+.+.+.+... ..+++++||
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~-g~~vi~iSA 306 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE----EAVKALADALARE-GLAVLPVSA 306 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH----HHHHHHHHHHHTT-TSCEEECCT
T ss_pred HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH----HHHHHHHHHHHhc-CCeEEEEEC
Confidence 67899999999997 22222222 2222222 25899999999999754 2233333333222 358999999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q psy17091 336 IKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 336 ~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
+++.|+++|++++.+.+....
T Consensus 307 ~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 307 LTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp TTCTTHHHHHHHHHHHHHTSC
T ss_pred CCccCHHHHHHHHHHHHHhcc
Confidence 999999999999998886544
No 429
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.45 E-value=6.7e-14 Score=168.54 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=92.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcc------------------------cc------cCCCcceeeeEEEEEECCEEE
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL------------------------VA------NYPGLTRDRHYGEGYIGKKSF 52 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~------------------------v~------~~~~~T~~~~~~~~~~~~~~~ 52 (1250)
.+|+++|++|+|||||+|+|+.....+ +. ...|+|.+.....+++++..+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 479999999999999999997532111 11 135788888777788889999
Q ss_pred EEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC-------hhhHHHHHHHHhcCCC-EEEEEeCCCCC
Q psy17091 53 IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLV-------EQDKLITNFLRKSGQP-IVLVINKSENI 124 (1250)
Q Consensus 53 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~-------~~~~~~~~~l~~~~~p-~ilv~NK~D~~ 124 (1250)
.||||||+. .+...+...+..+|++|+|+|++++.. .+..+....+...+.| +++|+||+|+.
T Consensus 124 ~iiDtPGh~---------~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 124 SLLDAPGHK---------GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp EECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred EEEECCCcH---------HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 999999976 455566777899999999999998642 3445556666677887 99999999996
Q ss_pred CCc---c--------chhHH-hc-CCC-----CcEecccccCCchhHHH
Q psy17091 125 NSS---I--------SLDFY-EL-GIG-----NPHIISALYGNGIKNFL 155 (1250)
Q Consensus 125 ~~~---~--------~~~~~-~~-~~~-----~~~~iSA~~g~gi~~L~ 155 (1250)
... . ..++. .. ++. +++++||++|.|+.+++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 421 1 12222 33 543 47899999999998743
No 430
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.45 E-value=8.1e-14 Score=156.69 Aligned_cols=154 Identities=13% Similarity=0.213 Sum_probs=101.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIES 83 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~a 83 (1250)
||+++|.+|||||||++++.++.........+.|.......+. ....+.||||||++......+ ....+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l------~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY------DSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH------HHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhh------hhhhhccCC
Confidence 6899999999999999999876432111122334333333321 236899999999974320000 345668999
Q ss_pred CEEEEEEeCCCCCChhhHHHHHHHHh-----cCCCEEEEEeCCCCCCCcc-------c-----hhHHhcC---C-CCcEe
Q psy17091 84 DIIIFIVDGRQGLVEQDKLITNFLRK-----SGQPIVLVINKSENINSSI-------S-----LDFYELG---I-GNPHI 142 (1250)
Q Consensus 84 d~il~v~D~~~~~~~~~~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~-------~-----~~~~~~~---~-~~~~~ 142 (1250)
+++|+|+|.++........+.+++.. .+.|+++|+||+|+...+. + .++.+.+ . -..+.
T Consensus 74 ~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 74 GALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp SEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred CEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 99999999998633333445444432 4689999999999976532 1 1222321 1 15689
Q ss_pred cccccCCchhHHHHHHHHhhCCc
Q psy17091 143 ISALYGNGIKNFLENILTIELPY 165 (1250)
Q Consensus 143 iSA~~g~gi~~L~~~i~~~l~~~ 165 (1250)
+||++ .++.+.+..+...+.+.
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSSTT
T ss_pred eccCC-CcHHHHHHHHHHHHHhh
Confidence 99998 58999999998766543
No 431
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.45 E-value=3.1e-13 Score=142.98 Aligned_cols=154 Identities=15% Similarity=0.143 Sum_probs=92.9
Q ss_pred ccCCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCccee--ccCCCCcceeeEEE
Q psy17091 146 LYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVI--TYDTPGTTRDSIKS 223 (1250)
Q Consensus 146 ~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~--~~~~~gtT~~~~~~ 223 (1250)
....++.++.+.+.+.+...... ...+.++|+++|.+|||||||+|+|++..... .+..++++.+.
T Consensus 21 ~~~~~~~~l~~~l~~~~~~~~~~---------~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--- 88 (193)
T 2ged_A 21 INKRKISQWREWIDEKLGGGSGG---------GGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--- 88 (193)
T ss_dssp TTTTBCHHHHHHHHHHC-----------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC---------CCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---
Confidence 34456778888777655432210 11346899999999999999999999865322 23344444432
Q ss_pred EEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCC-CCCCHHH-HHHHHHHHH-------cCC
Q psy17091 224 LFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQ-QNISAQD-INIANFIYE-------SGR 294 (1250)
Q Consensus 224 ~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~-~~~~~~d-~~~~~~~~~-------~~~ 294 (1250)
.+..+.+|||||+.+.... +..+ ....+..+|++++|+|++ ...+... ..++..+.. .+.
T Consensus 89 ----~~~~~~l~Dt~G~~~~~~~---~~~~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
T 2ged_A 89 ----DGSGVTLVDFPGHVKLRYK---LSDY----LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 157 (193)
T ss_dssp ----CCTTCSEEEETTCCBSSCC---HHHH----HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred ----cCCeEEEEECCCCchHHHH---HHHH----HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCC
Confidence 5678999999999665321 1222 123346689999999998 4311111 122222221 379
Q ss_pred cEEEEEeccccCCccchHHHHHHHHHHh
Q psy17091 295 SLIVCVNKWDSIIHNQRKIIKNNIKKKL 322 (1250)
Q Consensus 295 p~iiv~NK~Dl~~~~~~~~~~~~l~~~l 322 (1250)
|+++|+||+|+.+.....+..+.+.+.+
T Consensus 158 p~ilv~nK~Dl~~~~~~~~~~~~l~~~l 185 (193)
T 2ged_A 158 DILIACNKSELFTARPPSKIKDALESEI 185 (193)
T ss_dssp CEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred CEEEEEEchHhcCCCCHHHHHHHHHHHH
Confidence 9999999999987766666666665544
No 432
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.44 E-value=2e-13 Score=175.18 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=110.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceecc---------------CCCCcceeeEEEEEEEc----------------C
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITY---------------DTPGTTRDSIKSLFEYN----------------N 229 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~---------------~~~gtT~~~~~~~~~~~----------------~ 229 (1250)
...+|+|+|++|+|||||+|+|++....+.+ ..+|+|.......+.|+ +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 3579999999999999999999965332222 13456665555556665 6
Q ss_pred eeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCc-
Q psy17091 230 KKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH- 308 (1250)
Q Consensus 230 ~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~- 308 (1250)
..++||||||+.++. .....+++.+|++|+|+|++++.+.++..++..+...++|+++|+||+|+...
T Consensus 98 ~~i~liDTPG~~df~-----------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e 166 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-----------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLE 166 (842)
T ss_dssp EEEEEECCCCCCSSC-----------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHT
T ss_pred ceEEEEECcCchhhH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhh
Confidence 789999999998764 12345678999999999999999999999998888899999999999998731
Q ss_pred ---------cchHHHHHHHHHHhcc--------CCC----CeEEEeecCCCCChH
Q psy17091 309 ---------NQRKIIKNNIKKKLNF--------LSF----AMFNFISAIKLNNIN 342 (1250)
Q Consensus 309 ---------~~~~~~~~~l~~~l~~--------~~~----~~iv~iSA~~g~gv~ 342 (1250)
.......++++..+.. ... .++.+.||++|.++.
T Consensus 167 ~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~ 221 (842)
T 1n0u_A 167 LQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFT 221 (842)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEE
T ss_pred hccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccc
Confidence 1233444445544421 112 258889999998753
No 433
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.43 E-value=1.1e-13 Score=159.99 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=99.0
Q ss_pred eeeEEEEEeCCCChhhHHHHHHh------CCcceeccCCCCcceee--------------------EEE-----------
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLL------GENRVITYDTPGTTRDS--------------------IKS----------- 223 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~------~~~~~~~~~~~gtT~~~--------------------~~~----------- 223 (1250)
+...|+++|+||+|||||+|.|. +.+..+++..+++|... +..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 45789999999999999999996 44555555555554310 000
Q ss_pred --------EEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCc
Q psy17091 224 --------LFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS 295 (1250)
Q Consensus 224 --------~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p 295 (1250)
.+.+++.++++|||||+.+.. . ...+.+|++++|+|++.+...+ .+.. ...++|
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~-------~-------~~~~~aD~vl~Vvd~~~~~~~~---~l~~-~~~~~p 196 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSE-------T-------EVARMVDCFISLQIAGGGDDLQ---GIKK-GLMEVA 196 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHH-------H-------HHHTTCSEEEEEECC------C---CCCH-HHHHHC
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchH-------H-------HHHHhCCEEEEEEeCCccHHHH---HHHH-hhhccc
Confidence 001347799999999985421 0 1247899999999997652211 1111 112478
Q ss_pred EEEEEeccccCCccchHHHHHHHHHHhccCC------CCeEEEeecCCCCChHHHHHHHHHHHh
Q psy17091 296 LIVCVNKWDSIIHNQRKIIKNNIKKKLNFLS------FAMFNFISAIKLNNINSFMESINHVYD 353 (1250)
Q Consensus 296 ~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~------~~~iv~iSA~~g~gv~~l~~~i~~~~~ 353 (1250)
.++|+||+|+.+........++++..+.... ..+++++||++|.|++++++.+.+...
T Consensus 197 ~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 197 DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999765334333344444332221 368999999999999999999987654
No 434
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.43 E-value=1.6e-13 Score=157.28 Aligned_cols=89 Identities=27% Similarity=0.309 Sum_probs=66.0
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC-----------------eeEEEEecCCCCCCCc
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-----------------KKYILIDTAGIRRRNK 245 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~~~ 245 (1250)
++|+|+|.||||||||+|+|++.. ..++++|++|.++....+.+++ ..+.+|||||+.+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 689999999999999999999876 6678999999998877777765 4699999999976531
Q ss_pred chhhHHHHHHHHHHHhhccCcEEEEEecCCC
Q psy17091 246 TFEVIEKFSVIKTLKSILEANVVILLLDAQQ 276 (1250)
Q Consensus 246 ~~~~~e~~~~~~~~~~~~~ad~vllviD~~~ 276 (1250)
....+ ....+.+++.+|++++|+|+++
T Consensus 82 ~~~gl----~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGL----GNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGG----TCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchH----HHHHHHHHHhcCeEEEEEecCC
Confidence 11111 1234567899999999999986
No 435
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.43 E-value=1.1e-12 Score=165.11 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=92.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcc-----------ccc------CCCcceeeeEEEEEECC-------EEEEEEec
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDAL-----------VAN------YPGLTRDRHYGEGYIGK-------KSFIIIDT 57 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~-----------v~~------~~~~T~~~~~~~~~~~~-------~~~~liDT 57 (1250)
.++|+|+|++|+|||||+++|+.....+ +.+ ..++|.......+.|++ ..+.||||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 3689999999999999999997532111 111 35677777777777877 89999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC
Q psy17091 58 GGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126 (1250)
Q Consensus 58 pG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~ 126 (1250)
||+. .+...+..++..+|++|+|+|++++.......+...+...+.|+++|+||+|+...
T Consensus 90 PG~~---------df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 90 PGHV---------DFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCcc---------chHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 9986 34456677888999999999999988877777777777789999999999998653
No 436
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.43 E-value=3.5e-13 Score=154.58 Aligned_cols=91 Identities=32% Similarity=0.344 Sum_probs=69.2
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC-----------------EEEEEEecCCCCcc
Q psy17091 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-----------------KSFIIIDTGGFEPE 63 (1250)
Q Consensus 1 m~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 63 (1250)
|..+|+|||.||||||||+|+|++.. +.++++|++|.+...+.+.+.+ ..+.+|||||+...
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 67899999999999999999999987 5588999999998888877765 47999999999753
Q ss_pred hhhHHHHHHHHHHHHHhhcCCEEEEEEeCCC
Q psy17091 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQ 94 (1250)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~ 94 (1250)
... .+.+..++..+++++|++++|+|+++
T Consensus 80 a~~--~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASK--GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHH--HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccc--cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 211 11233445667899999999999975
No 437
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.42 E-value=1.1e-13 Score=149.78 Aligned_cols=136 Identities=19% Similarity=0.255 Sum_probs=81.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCc--ccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHH
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDA--LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQA 79 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~--~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 79 (1250)
.++|+++|.+|||||||+|+|++.... .....|+++.+. .+..+.+|||||+.... ..........
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~ 79 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLR-----YKLSDYLKTR 79 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGT-----HHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHH-----HHHHHHHHhc
Confidence 369999999999999999999987632 123444444433 45689999999986332 1111112222
Q ss_pred hhcCCEEEEEEeCC-C--CCChhhHHHHHHHHh------cCCCEEEEEeCCCCCCCccc-----------hhHH-hcCCC
Q psy17091 80 IIESDIIIFIVDGR-Q--GLVEQDKLITNFLRK------SGQPIVLVINKSENINSSIS-----------LDFY-ELGIG 138 (1250)
Q Consensus 80 ~~~ad~il~v~D~~-~--~~~~~~~~~~~~l~~------~~~p~ilv~NK~D~~~~~~~-----------~~~~-~~~~~ 138 (1250)
+..+|++|+|+|++ + .+......+.+++.. .+.|+++|+||+|+...... ..+. ..+.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~- 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK- 158 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc-
Confidence 34489999999998 3 333333344444432 47899999999999776432 1111 1122
Q ss_pred CcEecccccCCc
Q psy17091 139 NPHIISALYGNG 150 (1250)
Q Consensus 139 ~~~~iSA~~g~g 150 (1250)
.++++||++|.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 568899998875
No 438
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.42 E-value=2e-12 Score=163.66 Aligned_cols=128 Identities=23% Similarity=0.208 Sum_probs=93.7
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcce-----------ec------cCCCCcceeeEEEEEEEc-------CeeEEEEec
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRV-----------IT------YDTPGTTRDSIKSLFEYN-------NKKYILIDT 237 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~-----------~~------~~~~gtT~~~~~~~~~~~-------~~~~~liDT 237 (1250)
--+|+|+|+.++|||||..+|+..... .. ....|+|..+....+.|+ +..++||||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 468999999999999999999821110 01 124588888777778775 468999999
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHH
Q psy17091 238 AGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNN 317 (1250)
Q Consensus 238 pG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~ 317 (1250)
||+.++. ..+.++++-+|++|+|+|+.+|+..|...+++.+.+.++|.++++||+|.... +.....++
T Consensus 93 PGHvDF~-----------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a-~~~~~~~e 160 (709)
T 4fn5_A 93 PGHVDFT-----------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA-NFLRVVEQ 160 (709)
T ss_dssp CSCTTCH-----------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC-CHHHHHHH
T ss_pred CCCcccH-----------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc-cHHHHHHH
Confidence 9998884 33446778899999999999999999999999999999999999999998542 23333444
Q ss_pred HHHH
Q psy17091 318 IKKK 321 (1250)
Q Consensus 318 l~~~ 321 (1250)
++..
T Consensus 161 i~~~ 164 (709)
T 4fn5_A 161 IKKR 164 (709)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 4433
No 439
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.41 E-value=5.7e-13 Score=155.63 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=103.4
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcce--------------------------------------------
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTR-------------------------------------------- 218 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~-------------------------------------------- 218 (1250)
.+|+++|.+|||||||+|+|+|.+....+. ..+|+
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~-~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCS-SSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCC-CcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 489999999999999999999966422211 11111
Q ss_pred ----------eeEEEEEEE-cCeeEEEEecCCCCCCCcc--hhhHHHHHHHHHHHhhccCcEEEEEecCCC-C-CCHHHH
Q psy17091 219 ----------DSIKSLFEY-NNKKYILIDTAGIRRRNKT--FEVIEKFSVIKTLKSILEANVVILLLDAQQ-N-ISAQDI 283 (1250)
Q Consensus 219 ----------~~~~~~~~~-~~~~~~liDTpG~~~~~~~--~~~~e~~~~~~~~~~~~~ad~vllviD~~~-~-~~~~d~ 283 (1250)
+.....+.. +...+++|||||+.+.... ....+......+..+++.+|++++|+|++. . .+....
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~ 193 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHH
Confidence 111122222 2457999999999775211 112333334556678899999999998753 2 223446
Q ss_pred HHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHHHH
Q psy17091 284 NIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMES 347 (1250)
Q Consensus 284 ~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~ 347 (1250)
.+++.+...++|+++|+||+|+.+.... ..+.+.. .......+++.+|++++.++++.+..
T Consensus 194 ~l~~~~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 194 KISREVDPSGDRTFGVLTKIDLMDKGTD--AVEILEG-RSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHSCTTCTTEEEEEECGGGCCTTCC--SHHHHTT-SSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHhcccCCCEEEEEeCCccCCCccc--HHHHHcC-ccccccCCeEEEEECChHHhccCCCH
Confidence 6666666678999999999999864322 1122222 22223468899999999988765543
No 440
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.41 E-value=1e-12 Score=164.81 Aligned_cols=113 Identities=18% Similarity=0.254 Sum_probs=92.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCc------c-----ccc------CCCcceeeeEEEEEECCEEEEEEecCCCCcchh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDA------L-----VAN------YPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~------~-----v~~------~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 65 (1250)
.+|+|+|++|+|||||+++|++.... + +.+ ..++|.......+.+.+..+.||||||+.+
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~--- 86 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD--- 86 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG---
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc---
Confidence 48999999999999999999943221 0 011 236677777777888899999999999863
Q ss_pred hHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC
Q psy17091 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124 (1250)
Q Consensus 66 ~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~ 124 (1250)
+...+..++..+|++++|+|+.++.......+.+.+...+.|+++|+||+|+.
T Consensus 87 ------f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 ------FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp ------GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ------hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 34557778889999999999999988888888888888899999999999987
No 441
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.40 E-value=6e-14 Score=155.62 Aligned_cols=81 Identities=17% Similarity=0.079 Sum_probs=55.4
Q ss_pred cCCEEEEEEeCCCC--CChhh-HHHHHHHH----hcCCCEEEEEeCCCCCCCccc---hhHHhc-CCCCcEecccccCCc
Q psy17091 82 ESDIIIFIVDGRQG--LVEQD-KLITNFLR----KSGQPIVLVINKSENINSSIS---LDFYEL-GIGNPHIISALYGNG 150 (1250)
Q Consensus 82 ~ad~il~v~D~~~~--~~~~~-~~~~~~l~----~~~~p~ilv~NK~D~~~~~~~---~~~~~~-~~~~~~~iSA~~g~g 150 (1250)
++|++|+|+|++++ .+... ..+...+. ..+.|+++|+||+|+...... .++... ....++++||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999875 33222 22333232 247899999999998654332 233322 123789999999999
Q ss_pred hhHHHHHHHHhh
Q psy17091 151 IKNFLENILTIE 162 (1250)
Q Consensus 151 i~~L~~~i~~~l 162 (1250)
++++++.+.+.+
T Consensus 242 v~elf~~l~~~l 253 (255)
T 3c5h_A 242 VDLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 442
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.39 E-value=6.1e-13 Score=156.18 Aligned_cols=158 Identities=20% Similarity=0.320 Sum_probs=111.9
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC-EEEEEEecCCCCcchhhHHHHHHHHHHHHHhh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAII 81 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 81 (1250)
..|+|||.+|||||||+|+|++.... +.+++.+|.+...+.+.+++ ..+.++||||+.+..... ..+.......+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~-i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~--~~L~~~fl~~~e 234 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG--KGLGLEFLRHIA 234 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS--CCSCHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcc-ccCcccceecceeeEEEecCcceEEEEeccccccchhhh--hhhhHHHHHHHH
Confidence 46899999999999999999988653 77889999998888888876 889999999986432110 001112234467
Q ss_pred cCCEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCCEEEEEeCCCCCCCccch---hHHh-cCCCCcEecccccCCch
Q psy17091 82 ESDIIIFIVDGRQGLVEQD-KLITNFLRK-----SGQPIVLVINKSENINSSISL---DFYE-LGIGNPHIISALYGNGI 151 (1250)
Q Consensus 82 ~ad~il~v~D~~~~~~~~~-~~~~~~l~~-----~~~p~ilv~NK~D~~~~~~~~---~~~~-~~~~~~~~iSA~~g~gi 151 (1250)
.++.+|+++|.+ .....+ ..+.+.+.. ..+|.++|+||+|+....... +... .+. .++++||+++.|+
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~-~vi~iSA~~g~gi 312 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGL-AVLPVSALTGAGL 312 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTS-CEEECCTTTCTTH
T ss_pred HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCC-eEEEEECCCccCH
Confidence 899999999996 111111 112222222 358999999999987652222 2222 233 6899999999999
Q ss_pred hHHHHHHHHhhCCc
Q psy17091 152 KNFLENILTIELPY 165 (1250)
Q Consensus 152 ~~L~~~i~~~l~~~ 165 (1250)
++|++.+.+.+...
T Consensus 313 ~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 313 PALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887543
No 443
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.38 E-value=1.1e-12 Score=153.27 Aligned_cols=155 Identities=15% Similarity=0.177 Sum_probs=102.0
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCccee------------------------------------------
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRD------------------------------------------ 39 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~------------------------------------------ 39 (1250)
.|+|++||.+|||||||+|+|+|......+. ..+|+.
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~-~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCS-SSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCC-CcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4799999999999999999999976421111 112211
Q ss_pred ------------eeEEEEEE-CCEEEEEEecCCCCcch----hhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCC-C-hhh
Q psy17091 40 ------------RHYGEGYI-GKKSFIIIDTGGFEPEV----KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGL-V-EQD 100 (1250)
Q Consensus 40 ------------~~~~~~~~-~~~~~~liDTpG~~~~~----~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~-~-~~~ 100 (1250)
.....+.. ....+.||||||+.... .....+.+...+..++.++|++|+|+|+.... . ...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 11111111 23478999999987531 23455677788889999999999999875422 1 222
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCCccc-hhHH-----hcCCCCcEecccccCCchhHHHHHH
Q psy17091 101 KLITNFLRKSGQPIVLVINKSENINSSIS-LDFY-----ELGIGNPHIISALYGNGIKNFLENI 158 (1250)
Q Consensus 101 ~~~~~~l~~~~~p~ilv~NK~D~~~~~~~-~~~~-----~~~~~~~~~iSA~~g~gi~~L~~~i 158 (1250)
..+.+.+...++|+++|+||+|+.+.... .+.. .++. +++++|+.++.++++.++..
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence 33444444567899999999999765433 2222 2233 67899999999888765543
No 444
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.38 E-value=9.6e-13 Score=152.15 Aligned_cols=183 Identities=20% Similarity=0.179 Sum_probs=117.2
Q ss_pred eEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEc---------------------CeeEEEEecCCCC
Q psy17091 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN---------------------NKKYILIDTAGIR 241 (1250)
Q Consensus 183 ~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---------------------~~~~~liDTpG~~ 241 (1250)
++|+|+|.||||||||+|+|++.. ..++++|++|.++......+. +..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999864 556789999988777665543 3579999999997
Q ss_pred CCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCC----------CCHHHHHHHH------------------------
Q psy17091 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN----------ISAQDINIAN------------------------ 287 (1250)
Q Consensus 242 ~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~----------~~~~d~~~~~------------------------ 287 (1250)
+.....+.+. ...+.+++.+|++++|+|+++. -...|..++.
T Consensus 81 ~~a~~~~~lg----~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~ 156 (368)
T 2dby_A 81 KGAHKGEGLG----NQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARA 156 (368)
T ss_dssp CCCCSSSCTT----HHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHH----HHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhcc
Confidence 6542221121 2345678999999999999852 0112222110
Q ss_pred ----------------HHH-----------------------HcCCcEEEEEeccccC--CccchHHHHHHHHHHhccCC
Q psy17091 288 ----------------FIY-----------------------ESGRSLIVCVNKWDSI--IHNQRKIIKNNIKKKLNFLS 326 (1250)
Q Consensus 288 ----------------~~~-----------------------~~~~p~iiv~NK~Dl~--~~~~~~~~~~~l~~~l~~~~ 326 (1250)
.+. -..+|+++|+||.|.. +. ....+.+.++......
T Consensus 157 ~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~-~~n~~~~~v~~~a~~~- 234 (368)
T 2dby_A 157 DRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDG-RGNPQVEAVRRKALEE- 234 (368)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTC-TTCHHHHHHHHHHHHH-
T ss_pred chhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhccc-chhhHHHHHHHHHHHc-
Confidence 000 0238999999999842 22 0123344444443322
Q ss_pred CCeEEEeecCCCCChHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Q psy17091 327 FAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITRALISAIK 373 (1250)
Q Consensus 327 ~~~iv~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~ 373 (1250)
..+++++||+++.++.+|.+.-...+-. ...+..+.+++.++..-+
T Consensus 235 g~~vv~iSAk~E~el~eL~~~~~~~~l~-~~g~~~~gl~~li~~~~~ 280 (368)
T 2dby_A 235 GAEVVVVSARLEAELAELSGEEARELLA-AYGLQESGLQRLARAGYR 280 (368)
T ss_dssp TCEEEEECHHHHHHHHTSCHHHHHHHHH-HTTCCSCHHHHHHHHHHH
T ss_pred CCeEEEeechhHHHHHHhchHHHHHHHH-HhCcchhhHHHHHHHHHH
Confidence 3689999999999988887653332221 122334567777665443
No 445
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.37 E-value=3.2e-13 Score=146.39 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=99.7
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCC-----cceeccCCCCcceeeE--------EEEE------------------EEcCe
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGE-----NRVITYDTPGTTRDSI--------KSLF------------------EYNNK 230 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~-----~~~~~~~~~gtT~~~~--------~~~~------------------~~~~~ 230 (1250)
..+|+++|.+|||||||+|+|++. ....+...++++.|.. ...+ .+.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 578999999999999999999864 2344444555443210 0111 11345
Q ss_pred eEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCc--
Q psy17091 231 KYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIH-- 308 (1250)
Q Consensus 231 ~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~-- 308 (1250)
.+.+|||||+.... .. ....++.+++|+|++.+.... +......++|+++|+||+|+.+.
T Consensus 110 d~iiidt~G~~~~~------~~--------~~~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~~~~ 171 (221)
T 2wsm_A 110 DLLLIENVGNLICP------VD--------FDLGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAEAVG 171 (221)
T ss_dssp SEEEEEEEEBSSGG------GG--------CCCSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHHHHT
T ss_pred CEEEEeCCCCCCCC------ch--------hccccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCcchh
Confidence 78899999962211 00 112468899999998874322 22223346899999999999653
Q ss_pred cchHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHHHHhhc
Q psy17091 309 NQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 309 ~~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~~ 355 (1250)
....+..+.++.. ....+++++||++|.|++++++++.+.+..+
T Consensus 172 ~~~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 172 ADVEKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp CCHHHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 2344444444443 1246899999999999999999998876543
No 446
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.36 E-value=1.1e-12 Score=160.28 Aligned_cols=135 Identities=21% Similarity=0.202 Sum_probs=95.1
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcce--eccCCCCcceeeEEEE----------------------------------
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRV--ITYDTPGTTRDSIKSL---------------------------------- 224 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~--~~~~~~gtT~~~~~~~---------------------------------- 224 (1250)
..++|+|+|.+|||||||+|+|++.+.. .+++.|+|++......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4689999999999999999999998765 5677887765321100
Q ss_pred --EEEcC---eeEEEEecCCCCCCCcchhhHHH---HHHHHHHHhhccCcEEEEEecCCC-CCCHHHHHHHHHHHHcCCc
Q psy17091 225 --FEYNN---KKYILIDTAGIRRRNKTFEVIEK---FSVIKTLKSILEANVVILLLDAQQ-NISAQDINIANFIYESGRS 295 (1250)
Q Consensus 225 --~~~~~---~~~~liDTpG~~~~~~~~~~~e~---~~~~~~~~~~~~ad~vllviD~~~-~~~~~d~~~~~~~~~~~~p 295 (1250)
+.+++ .++++|||||+.+.... .+.+ |. ..+..+++.+|++++|+|+++ +.++++..++..+...+.|
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~-~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p 220 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQ--RVSRGYDFP-AVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK 220 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC---------CCSCHH-HHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchh--HHHHHhhHH-HHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC
Confidence 00111 36899999999753210 0111 11 223456788999999999988 5788888898888888899
Q ss_pred EEEEEeccccCCccchHHHHHHH
Q psy17091 296 LIVCVNKWDSIIHNQRKIIKNNI 318 (1250)
Q Consensus 296 ~iiv~NK~Dl~~~~~~~~~~~~l 318 (1250)
+++|+||+|+++..+.....+.+
T Consensus 221 vilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 221 IRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEEEECCCccCHHHHHHHHHHh
Confidence 99999999998765554444443
No 447
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.36 E-value=2.8e-12 Score=156.59 Aligned_cols=115 Identities=17% Similarity=0.305 Sum_probs=93.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcc---------------------cccCCCcceeeeEEEEEECCEEEEEEecCCCC
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDAL---------------------VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~---------------------v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~ 61 (1250)
..|+|||+.++|||||..+|+....++ .....|+|.......+.|++..++||||||+.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 479999999999999999996221110 12234778888888899999999999999987
Q ss_pred cchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCC
Q psy17091 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINS 126 (1250)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~ 126 (1250)
+. ...+..+++-+|.+|+|+|+..++..+...+.+.+.+.++|.++++||+|....
T Consensus 112 DF---------~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 112 DF---------SEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp GC---------SHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred HH---------HHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence 44 466788899999999999999999999999999999999999999999998654
No 448
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.35 E-value=1.5e-12 Score=145.02 Aligned_cols=168 Identities=16% Similarity=0.241 Sum_probs=105.0
Q ss_pred eeeEEEEEeCCCChhhHHHHHHh-----CCcceeccCCCCcc----------------eeeEEEEE--------------
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLL-----GENRVITYDTPGTT----------------RDSIKSLF-------------- 225 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~-----~~~~~~~~~~~gtT----------------~~~~~~~~-------------- 225 (1250)
+...++++|++|||||||++.|. |.+...+...|+.+ ++......
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 45789999999999999999998 77777776555421 11100000
Q ss_pred -----------E-EcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHH-HH----HH
Q psy17091 226 -----------E-YNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDIN-IA----NF 288 (1250)
Q Consensus 226 -----------~-~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~-~~----~~ 288 (1250)
. ..+..+++|||||+.+.. ..... ......++.. +++++++|++...+..+.. .. ..
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~----~~~~l-~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETF----LFHEF-GVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHH----HHSHH-HHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchh----hhhhh-HHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 0 012489999999983211 00000 1112245566 8999999998766655543 11 22
Q ss_pred HHHcCCcEEEEEeccccCCccchHHHHHHHH------HH------------------hc-cCCCCeEEEeecCCCCChHH
Q psy17091 289 IYESGRSLIVCVNKWDSIIHNQRKIIKNNIK------KK------------------LN-FLSFAMFNFISAIKLNNINS 343 (1250)
Q Consensus 289 ~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~------~~------------------l~-~~~~~~iv~iSA~~g~gv~~ 343 (1250)
....++|+++|+||+|+.+.....+..+.++ +. +. .....+++++||++|.|+++
T Consensus 167 ~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 167 DLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFED 246 (262)
T ss_dssp HHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHH
T ss_pred hcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHH
Confidence 3345799999999999976432222222111 01 11 11234789999999999999
Q ss_pred HHHHHHHHHhh
Q psy17091 344 FMESINHVYDS 354 (1250)
Q Consensus 344 l~~~i~~~~~~ 354 (1250)
+++++.+.+..
T Consensus 247 l~~~i~~~~~~ 257 (262)
T 1yrb_A 247 LETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999887654
No 449
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.35 E-value=4.4e-13 Score=163.97 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=91.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCc--ccccCCCcceeeeEEE-----------------------------------
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDA--LVANYPGLTRDRHYGE----------------------------------- 44 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~--~v~~~~~~T~~~~~~~----------------------------------- 44 (1250)
.++|+++|.+|||||||+|+|++.+.+ .++..|++|+......
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 379999999999999999999998865 5778887765322111
Q ss_pred -EEECC---EEEEEEecCCCCcchhhHHHHH--HHHHHHHHhhcCCEEEEEEeCCC-CCChhhHHHHHHHHhcCCCEEEE
Q psy17091 45 -GYIGK---KSFIIIDTGGFEPEVKKGIMHE--MTKQTKQAIIESDIIIFIVDGRQ-GLVEQDKLITNFLRKSGQPIVLV 117 (1250)
Q Consensus 45 -~~~~~---~~~~liDTpG~~~~~~~~~~~~--~~~~~~~~~~~ad~il~v~D~~~-~~~~~~~~~~~~l~~~~~p~ilv 117 (1250)
+.+.+ ..+.||||||+.......+.+. +...+..++..+|++|+|+|+++ +....+..+.+.++..+.|+++|
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilV 224 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVV 224 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEE
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 00000 3689999999875321111111 44566777889999999999987 46666777777777777899999
Q ss_pred EeCCCCCCCccc
Q psy17091 118 INKSENINSSIS 129 (1250)
Q Consensus 118 ~NK~D~~~~~~~ 129 (1250)
+||+|+......
T Consensus 225 lNK~Dl~~~~el 236 (550)
T 2qpt_A 225 LNKADMVETQQL 236 (550)
T ss_dssp EECGGGSCHHHH
T ss_pred EECCCccCHHHH
Confidence 999998764443
No 450
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.34 E-value=4.6e-12 Score=143.56 Aligned_cols=167 Identities=14% Similarity=0.187 Sum_probs=86.7
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccCC--------CCcceeeEEEEEEEcC--eeEEEEecCCCCCC-------C
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDT--------PGTTRDSIKSLFEYNN--KKYILIDTAGIRRR-------N 244 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~--------~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~-------~ 244 (1250)
.++|+++|++|||||||+|+|.+.+....+.. +++..+.....+..++ ..+++|||||+... .
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 58999999999999999999998643332221 1111111112222222 46889999999422 1
Q ss_pred cchhhHHHHHHHHHHHhh----------ccCcEEEEEecCCC-CCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHH
Q psy17091 245 KTFEVIEKFSVIKTLKSI----------LEANVVILLLDAQQ-NISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKI 313 (1250)
Q Consensus 245 ~~~~~~e~~~~~~~~~~~----------~~ad~vllviD~~~-~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~ 313 (1250)
...+.++... ......+ ..+++++++++.+. ++...+..+++.+. .+.|+++|+||+|+....+...
T Consensus 98 ~l~~~l~~~~-~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~ 175 (301)
T 2qnr_A 98 TIISYIDEQF-ERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER 175 (301)
T ss_dssp THHHHHHHHH-HHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHH
Confidence 1111111110 0111111 13456777777654 58887776666554 3679999999999986554444
Q ss_pred HHHHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHHHH
Q psy17091 314 IKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVY 352 (1250)
Q Consensus 314 ~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~ 352 (1250)
..+++.+.+...+ ++++++||++| |++++|..+.+.+
T Consensus 176 ~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 176 LKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHTT-CCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHh
Confidence 4445555444433 68899999999 9999998886654
No 451
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=151.27 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=81.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccC--------CCcceeeeEEEEEECCE--EEEEEecCCCCcchh-----hH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANY--------PGLTRDRHYGEGYIGKK--SFIIIDTGGFEPEVK-----KG 67 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~--------~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~-----~~ 67 (1250)
.+|+++|.+|||||||+|+|++......... ++++.+.....+..++. .+.+|||||+.+... ..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~ 117 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 117 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHH
Confidence 4799999999999999999987754322221 33333433333444554 789999999943211 11
Q ss_pred HHHHHHHHHHHHhhc-------------CCEEEEEEeC-CCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccch---
Q psy17091 68 IMHEMTKQTKQAIIE-------------SDIIIFIVDG-RQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISL--- 130 (1250)
Q Consensus 68 ~~~~~~~~~~~~~~~-------------ad~il~v~D~-~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~~--- 130 (1250)
+...+..+...++.+ .|+++|+++. ..++...+..+.+.+. .+.|+|+|+||+|+.......
T Consensus 118 i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~~k 196 (361)
T 2qag_A 118 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLK 196 (361)
T ss_dssp THHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHHHH
Confidence 222233333344433 2468888876 5567777766666653 578999999999997654431
Q ss_pred ----hHH-hcCCCCcEecccccCCchhHHHHHHHHhh
Q psy17091 131 ----DFY-ELGIGNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 131 ----~~~-~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
++. ..++ +++++||+++.| ++.+..+...+
T Consensus 197 ~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 197 KRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp HHHHHHTTCC-C-CSCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHH
Confidence 111 2344 779999999988 66555554433
No 452
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.33 E-value=3.1e-12 Score=144.99 Aligned_cols=139 Identities=20% Similarity=0.255 Sum_probs=96.7
Q ss_pred HHhhcCCEEEEEEeCCCCC-Chhh-HHHHHHHHhcCCCEEEEEeCCCCCCCcc---c---hhHH-hcCCCCcEecccccC
Q psy17091 78 QAIIESDIIIFIVDGRQGL-VEQD-KLITNFLRKSGQPIVLVINKSENINSSI---S---LDFY-ELGIGNPHIISALYG 148 (1250)
Q Consensus 78 ~~~~~ad~il~v~D~~~~~-~~~~-~~~~~~l~~~~~p~ilv~NK~D~~~~~~---~---~~~~-~~~~~~~~~iSA~~g 148 (1250)
.+++++|++++|+|++++. +... ..++..+...++|+++|+||+|+.+... . .+++ ..+. +++++||++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~-~~~~~SA~~g 153 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY-DVLKVSAKTG 153 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC-eEEEEECCCC
Confidence 4689999999999998764 3322 2344455667899999999999976531 2 3333 4565 7899999999
Q ss_pred CchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCC-------cceeeE
Q psy17091 149 NGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG-------TTRDSI 221 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~g-------tT~~~~ 221 (1250)
.|+++|++.+. .-.++++|++|||||||+|.|. .....++.... ||+...
T Consensus 154 ~gi~~L~~~l~----------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~ 210 (302)
T 2yv5_A 154 EGIDELVDYLE----------------------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR 210 (302)
T ss_dssp TTHHHHHHHTT----------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE
T ss_pred CCHHHHHhhcc----------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE
Confidence 99999987642 1248999999999999999999 65444444332 444332
Q ss_pred EEEEEEcCeeEEEEecCCCCCC
Q psy17091 222 KSLFEYNNKKYILIDTAGIRRR 243 (1250)
Q Consensus 222 ~~~~~~~~~~~~liDTpG~~~~ 243 (1250)
.+... .--.++||||+...
T Consensus 211 --~~~~~-~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 211 --LIPFG-KGSFVGDTPGFSKV 229 (302)
T ss_dssp --EEEET-TTEEEESSCCCSSC
T ss_pred --EEEcC-CCcEEEECcCcCcC
Confidence 22222 23578999998643
No 453
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.1e-12 Score=136.51 Aligned_cols=113 Identities=22% Similarity=0.292 Sum_probs=71.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCc--ccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDA--LVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAI 80 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~--~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 80 (1250)
++|+++|.+|||||||+|+|++.... .....|++|.+. .+..+.+|||||+.... . .........+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~-~----~~~~~~~~~~ 116 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLR-Y----KLSDYLKTRA 116 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSS-C----CHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHH-H----HHHHHHHhhc
Confidence 68999999999999999999987632 223445555433 45689999999987543 1 1112223345
Q ss_pred hcCCEEEEEEeCCCCCChhhHH----HHHHHHh------cCCCEEEEEeCCCCCCCcc
Q psy17091 81 IESDIIIFIVDGRQGLVEQDKL----ITNFLRK------SGQPIVLVINKSENINSSI 128 (1250)
Q Consensus 81 ~~ad~il~v~D~~~~~~~~~~~----~~~~l~~------~~~p~ilv~NK~D~~~~~~ 128 (1250)
..+|++++|+|++.. ...... +..++.. .+.|+++|+||+|+.+...
T Consensus 117 ~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 117 KFVKGLIFMVDSTVD-PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGEEEEEEEEETTCC-HHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ccCCEEEEEEECCCC-chhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 669999999999821 122222 2233222 3789999999999876543
No 454
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.32 E-value=4.7e-12 Score=148.73 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=87.6
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceeccC------CCCcce-eeEEEEEEEcC--eeEEEEecCCCCCCCcch---hh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYD------TPGTTR-DSIKSLFEYNN--KKYILIDTAGIRRRNKTF---EV 249 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~------~~gtT~-~~~~~~~~~~~--~~~~liDTpG~~~~~~~~---~~ 249 (1250)
.++|+|+|.+|||||||+|+|+|......+. .+.++. +.....+...+ ..+++|||||+....... ..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 5889999999999999999999876532210 111221 11111122223 268899999996542100 11
Q ss_pred HHHHHHHHHHH-----------hh--ccCcEEEEEecCC-CCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHH
Q psy17091 250 IEKFSVIKTLK-----------SI--LEANVVILLLDAQ-QNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIK 315 (1250)
Q Consensus 250 ~e~~~~~~~~~-----------~~--~~ad~vllviD~~-~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~ 315 (1250)
+..+....... .+ ..+|+++++++.+ .++...+..+++.+.. +.|+|+|+||+|+........+.
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k 189 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 189 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHH
Confidence 11111001111 12 2356788888887 6889999888887764 89999999999998766665555
Q ss_pred HHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHHH
Q psy17091 316 NNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHV 351 (1250)
Q Consensus 316 ~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~ 351 (1250)
+.+.+.+... .++++.+||+++.++++++..+.+.
T Consensus 190 ~~i~~~~~~~-~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 190 KQIMKEIQEH-KIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHH-TCCCCCCC-----------------
T ss_pred HHHHHHHHHc-CCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 5565555433 3678889999999999877666544
No 455
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.31 E-value=7.9e-12 Score=119.18 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=91.4
Q ss_pred CCCCceEEEEEcChHHHHHHHHHHHHHHHcCCEEEEeeccccccccHHHHHHHHHHcCCCEEEEEccCcccCCeEEEEEc
Q psy17091 1138 FSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDL 1217 (1250)
Q Consensus 1138 ~~~~~~v~V~~~~~~~~~~a~~~a~~Lr~~gi~v~~~~~~~~~~~s~~~~~~~A~~~gip~~viig~~e~~~g~v~vk~~ 1217 (1250)
...|.||.|+|+++.+..+|.+++++|++.|++|++|.. +.+++++++++.|...++||++|||++|.++++|+||.+
T Consensus 5 ~~~P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsVR~r 82 (130)
T 1v95_A 5 SSGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIM 82 (130)
T ss_dssp CCCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEEC
T ss_pred CCCCCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEEEechHHhcCeeEEEec
Confidence 356889999999999999999999999999999999863 124889999999999999999999999999999999999
Q ss_pred CC--CCCCCCCcceeeehHHHHHHHHHHHH
Q psy17091 1218 RN--KYEDPTLKQISISFKDAENYFYKKII 1245 (1250)
Q Consensus 1218 ~~--~~~~~~~~e~~v~~~el~~~l~~~i~ 1245 (1250)
.. + +...||++|+++.|..++.
T Consensus 83 ~~~~~------e~~~m~lde~i~~l~~~~~ 106 (130)
T 1v95_A 83 FGTPQ------EHRNMPQADAMVLVARNYE 106 (130)
T ss_dssp SSSCC------EEEEEEHHHHHHHHHHHHH
T ss_pred CCCCC------ccCccCHHHHHHHHHHHHH
Confidence 88 5 7789999999999998884
No 456
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.31 E-value=8.6e-13 Score=152.70 Aligned_cols=144 Identities=19% Similarity=0.177 Sum_probs=87.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHc------CCCcccccCC-------------------------------------Cccee
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTN------SRDALVANYP-------------------------------------GLTRD 39 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~------~~~~~v~~~~-------------------------------------~~T~~ 39 (1250)
+.|+|+|+||||||||+|+|++ .+.+++...| |+|++
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~ 154 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRT 154 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHH
Confidence 5899999999999999999996 2222222222 23332
Q ss_pred eeEEEE--EECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEE
Q psy17091 40 RHYGEG--YIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117 (1250)
Q Consensus 40 ~~~~~~--~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv 117 (1250)
...... ...+..+.||||||+.... ......+|++++|+|+..+... ..+...+ ...|.++|
T Consensus 155 ~~~~~~~~~~~~~~~iliDT~Gi~~~~------------~~l~~~~d~vl~V~d~~~~~~~--~~i~~~i--l~~~~ivV 218 (349)
T 2www_A 155 TNEAILLCEGAGYDIILIETVGVGQSE------------FAVADMVDMFVLLLPPAGGDEL--QGIKRGI--IEMADLVA 218 (349)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCC--CH------------HHHHTTCSEEEEEECCC----------------CCSCSEEE
T ss_pred HHHHHHhhccCCCCEEEEECCCcchhh------------hhHHhhCCEEEEEEcCCcchhH--HHhHHHH--HhcCCEEE
Confidence 211110 1356789999999975221 1125689999999998764211 1111111 35688999
Q ss_pred EeCCCCCCCccc----hhHH---h-------cCCCCcEecccccCCchhHHHHHHHHhh
Q psy17091 118 INKSENINSSIS----LDFY---E-------LGIGNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 118 ~NK~D~~~~~~~----~~~~---~-------~~~~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
+||+|+.+.... .++. . ....+++++||++|.|+++|++.|.+.+
T Consensus 219 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 219 VTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp ECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 999998643221 1111 1 0123568999999999999999998765
No 457
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.28 E-value=2e-12 Score=145.43 Aligned_cols=138 Identities=20% Similarity=0.274 Sum_probs=95.1
Q ss_pred HhhcCCEEEEEEeCCCCCChhhHHHHHHHH---hcCCCEEEEEeCCCCCCCcc----c---hhHH-hcCCCCcEeccccc
Q psy17091 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLR---KSGQPIVLVINKSENINSSI----S---LDFY-ELGIGNPHIISALY 147 (1250)
Q Consensus 79 ~~~~ad~il~v~D~~~~~~~~~~~~~~~l~---~~~~p~ilv~NK~D~~~~~~----~---~~~~-~~~~~~~~~iSA~~ 147 (1250)
.+.++|.+++|+|+..+....+ .+.++|. ..++|.++|+||+|+.+... . .+.| ..|. +++.+||++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~-~v~~~sa~~ 160 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY-DVYLTSSKD 160 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC-CEEECCHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 5889999999999997766655 5666664 47899999999999987643 2 3444 4576 889999999
Q ss_pred CCchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcceeccCCC-------Ccceee
Q psy17091 148 GNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-------GTTRDS 220 (1250)
Q Consensus 148 g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~-------gtT~~~ 220 (1250)
+.|+++|++.. +.-.++|+|++|||||||+|.|.|.....++... +||+..
T Consensus 161 ~~g~~~L~~~~----------------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~ 218 (307)
T 1t9h_A 161 QDSLADIIPHF----------------------QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV 218 (307)
T ss_dssp HTTCTTTGGGG----------------------TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC
T ss_pred CCCHHHHHhhc----------------------CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH
Confidence 99998866422 0135899999999999999999987655444433 456544
Q ss_pred EEEEEEEcCeeEEEEecCCCCCCC
Q psy17091 221 IKSLFEYNNKKYILIDTAGIRRRN 244 (1250)
Q Consensus 221 ~~~~~~~~~~~~~liDTpG~~~~~ 244 (1250)
.. +... ...++||||+....
T Consensus 219 ~~--~~~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 219 EL--IHTS--GGLVADTPGFSSLE 238 (307)
T ss_dssp CE--EEET--TEEEESSCSCSSCC
T ss_pred HH--hhcC--CEEEecCCCccccc
Confidence 22 2222 35789999997643
No 458
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.28 E-value=6.7e-12 Score=145.09 Aligned_cols=89 Identities=34% Similarity=0.391 Sum_probs=69.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEEC---------------------CEEEEEEecCCCC
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIG---------------------KKSFIIIDTGGFE 61 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~---------------------~~~~~liDTpG~~ 61 (1250)
.+|++||.||||||||+|+|++.. +.+.++|++|.+...+.+.+. +..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999875 457889999998888876542 3579999999987
Q ss_pred cchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCC
Q psy17091 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQ 94 (1250)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~ 94 (1250)
..... .+.+..++...++.+|++++|+|+++
T Consensus 81 ~~a~~--~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHK--GEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCS--SSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccc--cchHHHHHHHHHHhCCEEEEEEECCC
Confidence 43211 01223455667899999999999975
No 459
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.26 E-value=1.6e-12 Score=151.25 Aligned_cols=146 Identities=21% Similarity=0.192 Sum_probs=92.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHH------cCCCcccccCCCcce-------ee----------eEE----------------
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLT------NSRDALVANYPGLTR-------DR----------HYG---------------- 43 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~------~~~~~~v~~~~~~T~-------~~----------~~~---------------- 43 (1250)
++|+++|.||||||||+|+|+ +.+..++...|+.+. +. ...
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 159 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRA 159 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchhHH
Confidence 589999999999999999996 333343333333322 00 000
Q ss_pred ------EEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEE
Q psy17091 44 ------EGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117 (1250)
Q Consensus 44 ------~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv 117 (1250)
.+...+..+.||||||+.... ...+..+|++++|+|+..+.... .+...+ ..+|.++|
T Consensus 160 t~d~i~~~~~~~~~~iiiDTpGi~~~~------------~~~~~~aD~vl~V~d~~~~~~~~--~l~~~~--~~~p~ivV 223 (355)
T 3p32_A 160 TRETVVLLEAAGFDVILIETVGVGQSE------------VAVANMVDTFVLLTLARTGDQLQ--GIKKGV--LELADIVV 223 (355)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSCSSHH------------HHHHTTCSEEEEEEESSTTCTTT--TCCTTS--GGGCSEEE
T ss_pred HHHHHHHHhhCCCCEEEEeCCCCCcHH------------HHHHHhCCEEEEEECCCCCccHH--HHHHhH--hhcCCEEE
Confidence 012256789999999976321 12248999999999986532211 111111 24599999
Q ss_pred EeCCCCCCCccc----hhHHh----c-----CC-CCcEecccccCCchhHHHHHHHHhhCC
Q psy17091 118 INKSENINSSIS----LDFYE----L-----GI-GNPHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 118 ~NK~D~~~~~~~----~~~~~----~-----~~-~~~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
+||+|+...... .++.. . ++ .+++++||++|.|+++|++.+.+.+..
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999998654322 11111 1 22 368999999999999999999887643
No 460
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.25 E-value=1.4e-11 Score=144.86 Aligned_cols=132 Identities=21% Similarity=0.223 Sum_probs=107.6
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC-CCCe
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGPK 915 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~ 915 (1250)
.+.+.+.++||. .|.+|.....+.+.+ +++++.+.++||++.| +.++|||+.|+|++++++....++ ++|+
T Consensus 181 ~~~~~~~~~Gy~-ev~tP~l~~~~l~~~---sG~~~~f~~emy~~~~----~~l~LrPt~e~~i~~~~~~~i~s~~~LPl 252 (425)
T 2dq3_A 181 FMLDLHTKKGYK-EICPPHLVKPEILIG---TGQLPKFEEDLYKCER----DNLYLIPTAEVPLTNLYREEILKEENLPI 252 (425)
T ss_dssp HHHHHHHHTTCE-EEECCSEECHHHHHH---HSCTTTTGGGSCBCTT----TCCEECSSTHHHHHGGGTTEEEETTTCCE
T ss_pred HHHHHHHHcCCE-EEECCccccHHHHHh---cCCCCcChhhheEecC----CeEEEcCCCcHHHHHHHHhhccccccCCe
Confidence 466777889998 899999999988753 2444556789999854 579999999999999999865554 7899
Q ss_pred eEEEEeceeecCCCCCC-------CCCceEEeeEEEecCCCch--hchHHHHHHHHHHHHCCCCceE-EEeC
Q psy17091 916 RLWYSGPMFRHERPQYG-------RYRQFYQIGVEAIGFPGPD--IDAELIIMCSRLWKNLNLKNIC-LELN 977 (1250)
Q Consensus 916 r~yy~g~VfR~e~~~~g-------r~REf~Q~g~eiig~~~~~--adaEvi~l~~~~l~~lgl~~~~-i~i~ 977 (1250)
|+||+|+|||+|.++.| |.|||+|.++++|+.++.. ...|++.++.++|+.||++ +. +.+.
T Consensus 253 rl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~-~rvv~l~ 323 (425)
T 2dq3_A 253 YLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLP-YRVVELC 323 (425)
T ss_dssp EEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred EEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc-eEEEEec
Confidence 99999999999986533 9999999999999987542 2479999999999999996 66 4443
No 461
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.23 E-value=2.8e-10 Score=133.11 Aligned_cols=190 Identities=11% Similarity=0.094 Sum_probs=139.7
Q ss_pred ee-cccCCcccccccccCCC---C--cccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccC-ccC-CCH
Q psy17091 620 IS-TQVGCAINCIFCSTGRQ---G--FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMG-EPL-LNY 691 (1250)
Q Consensus 620 ~s-sq~GC~~~C~fC~t~~~---~--~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~G-Epl-~n~ 691 (1250)
++ +..||+++|.||+.+.. + ..+.++.+||++++..+.+ ..++.|.|.|.| ||. .++
T Consensus 69 i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~---------------~g~~~i~~~gg~~~p~~~~~ 133 (369)
T 1r30_A 69 LSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA---------------AGSTRFCMGAAWKNPHERDM 133 (369)
T ss_dssp EEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHH---------------TTCSEEEEEECCSSCCTTTH
T ss_pred EEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHH---------------cCCcEEEEEeCCCCCCcCCH
Confidence 45 47899999999997642 2 2355899999988765543 125668887754 454 588
Q ss_pred HHHHHHHHHhhcCCCCCCCCceEEEEecCchh--HHHHhhhh-CCCeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHH
Q psy17091 692 KSTIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 768 (1250)
Q Consensus 692 ~~v~~~~~~~~~~~~~~~~~~~itvsT~g~~~--~i~~~~~~-~~~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~ 768 (1250)
+.+.+.++.+++. +..+++ |+|... .+++|.+. ++ .+.+||.+ +++.++++.+ +...++.+++++
T Consensus 134 ~~l~~ll~~ik~~------g~~i~~-t~G~l~~e~l~~L~~aGvd-~v~i~les-~~e~~~~i~~---~~~~~~~l~~i~ 201 (369)
T 1r30_A 134 PYLEQMVQGVKAM------GLEACM-TLGTLSESQAQRLANAGLD-YYNHNLDT-SPEFYGNIIT---TRTYQERLDTLE 201 (369)
T ss_dssp HHHHHHHHHHHHT------TSEEEE-ECSSCCHHHHHHHHHHCCC-EEECCCBS-CHHHHHHHCC---SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc------CCeEEE-ecCCCCHHHHHHHHHCCCC-EEeecCcC-CHHHHHHhCC---CCCHHHHHHHHH
Confidence 9999999999875 335676 888653 35555554 23 36789999 9999999964 578999999998
Q ss_pred HHHhhCCCceEEEEEEEeccCCCCHHHHHHHHHHhhcCCCcc---ceeEeeeccCCCCCCCC---CCCcHHHHHHHHHHH
Q psy17091 769 RYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT---SCKINLIPFNCFPNSNL---ICSKNSRIKIFAKIL 842 (1250)
Q Consensus 769 ~~~~~~~~~~v~~e~~li~g~nd~~~~~~~l~~~~~~~~~~~---~~~vnlip~n~~~~~~~---~~p~~e~i~~f~~iL 842 (1250)
...+. + +.+...+|.|+|++.++..+++++++. + +.+|.+-+|.|.++.++ .+|+.+.+.++.+++
T Consensus 202 ~a~~~--G--i~v~~~~I~Gl~et~ed~~~~l~~l~~----l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~ 273 (369)
T 1r30_A 202 KVRDA--G--IKVCSGGIVGLGETVKDRAGLLLQLAN----LPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVA 273 (369)
T ss_dssp HHHHH--H--CEEECCEEECSSCCHHHHHHHHHHHHS----SSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHH
T ss_pred HHHHc--C--CeeeeeeEeeCCCCHHHHHHHHHHHHh----hcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHH
Confidence 76543 2 456778999999999999999999998 5 34777777888887765 467777666655555
Q ss_pred Hh
Q psy17091 843 MN 844 (1250)
Q Consensus 843 ~~ 844 (1250)
+.
T Consensus 274 r~ 275 (369)
T 1r30_A 274 RI 275 (369)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 462
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.22 E-value=4.6e-12 Score=158.01 Aligned_cols=157 Identities=22% Similarity=0.222 Sum_probs=122.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcCCCc-----------ccccC------CCcceeeeEEEEEECCEEEEEEecCCCCcch
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNSRDA-----------LVANY------PGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~~~~-----------~v~~~------~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 64 (1250)
...|+|+|+.++|||||..+|+..... .+.++ .|+|.......+.|++..++||||||+.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D-- 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD-- 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH--
Confidence 357999999999999999999632111 01111 26777777777889999999999999874
Q ss_pred hhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhH---------
Q psy17091 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDF--------- 132 (1250)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~--------- 132 (1250)
|...+..+++-+|++|+|+|+.+++..+...+++.+.+.+.|.++++||+|....+.. .+.
T Consensus 80 -------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~ 152 (638)
T 3j25_A 80 -------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIV 152 (638)
T ss_dssp -------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCC
T ss_pred -------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcc
Confidence 4466788899999999999999999999999999999999999999999997643311 000
Q ss_pred -------------------------------------------------------HhcCCCCcEecccccCCchhHHHHH
Q psy17091 133 -------------------------------------------------------YELGIGNPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 133 -------------------------------------------------------~~~~~~~~~~iSA~~g~gi~~L~~~ 157 (1250)
....+.+++..||+++.|++.|++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~ 232 (638)
T 3j25_A 153 IKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEV 232 (638)
T ss_dssp CCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHH
T ss_pred ccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhh
Confidence 0112235678899999999999999
Q ss_pred HHHhhCCccc
Q psy17091 158 ILTIELPYKK 167 (1250)
Q Consensus 158 i~~~l~~~~~ 167 (1250)
+...++.+..
T Consensus 233 i~~~~p~p~~ 242 (638)
T 3j25_A 233 ITNKFYSSTH 242 (638)
T ss_dssp HHHSCCCSGG
T ss_pred hhccccCccc
Confidence 9998886643
No 463
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.22 E-value=7.5e-12 Score=144.60 Aligned_cols=144 Identities=22% Similarity=0.165 Sum_probs=90.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHH------cCCCcccccCCCcceee--------------------eEE-------------
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLT------NSRDALVANYPGLTRDR--------------------HYG------------- 43 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~------~~~~~~v~~~~~~T~~~--------------------~~~------------- 43 (1250)
+.|+++|++|+|||||+|.|+ +.+.+++...|+.|... ...
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~ 136 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQR 136 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHHH
Confidence 479999999999999999997 34445555555544310 000
Q ss_pred ------EEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEE
Q psy17091 44 ------EGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117 (1250)
Q Consensus 44 ------~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv 117 (1250)
...+.+..+.||||||+.... .. ....+|++++|+|+..+..... +.. ...+.|.++|
T Consensus 137 ~~~~~~~~~~~~~~i~liDTpG~~~~~-----~~-------~~~~aD~vl~Vvd~~~~~~~~~--l~~--~~~~~p~ivv 200 (341)
T 2p67_A 137 ARELMLLCEAAGYDVVIVETVGVGQSE-----TE-------VARMVDCFISLQIAGGGDDLQG--IKK--GLMEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECCTTHH-----HH-------HHTTCSEEEEEECC------CC--CCH--HHHHHCSEEE
T ss_pred HHHHHHHhhccCCCEEEEeCCCccchH-----HH-------HHHhCCEEEEEEeCCccHHHHH--HHH--hhhcccCEEE
Confidence 001456789999999986322 01 2479999999999875321110 111 1124688999
Q ss_pred EeCCCCCCCccc----hhHHh----cC------CCCcEecccccCCchhHHHHHHHHhh
Q psy17091 118 INKSENINSSIS----LDFYE----LG------IGNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 118 ~NK~D~~~~~~~----~~~~~----~~------~~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
+||+|+...... .++.. .+ ..+++++||++|.|+++|++.+.+.+
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 999998754222 12211 12 23568999999999999999998754
No 464
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.21 E-value=4.5e-11 Score=133.30 Aligned_cols=139 Identities=16% Similarity=0.160 Sum_probs=112.4
Q ss_pred CcHHHHHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCC
Q psy17091 830 SKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNL 909 (1250)
Q Consensus 830 p~~e~i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~ 909 (1250)
|-..-.+.+++++.++|+. .|.+|..+..+.+-. ..+++ ..+||.+.++ -++.++|||++++++.+.+..+..
T Consensus 72 ~~~~l~~~ir~~~~~~Gf~-EV~tP~Le~~~l~~~---~g~~~--~~~m~~~~np-l~e~~~LRp~l~p~l~~~~r~~~~ 144 (288)
T 3dsq_A 72 ALLELEEKLAKALHQQGFV-QVVTPTIITKSALAK---MTIGE--DHPLFSQVFW-LDGKKCLRPMLAPNLYTLWRELER 144 (288)
T ss_dssp HHHHHHHHHHHHHHTTTCE-ECCCCSEEEHHHHHT---TSSCC----CCTTTSCE-EETTEEECSCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCE-EEECCeeecHHHHhh---cCCCc--ccccEEeecc-cccchhhhhcChHHHHHHHHHHHh
Confidence 3455667789999999999 799999988776542 12222 1268877766 446789999999999987776544
Q ss_pred CCCCCeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEE
Q psy17091 910 IYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLE 975 (1250)
Q Consensus 910 ~~~~P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~ 975 (1250)
+.+.|+|+|++|+|||++.++.+|.+||+|++++++|.++....+|+..++.++|+.+|++++.+.
T Consensus 145 ~~~~PlrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~~~~~~ 210 (288)
T 3dsq_A 145 LWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIREFELV 210 (288)
T ss_dssp TSCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred CCCCCEEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCCCCcEEe
Confidence 457899999999999999988899999999999999988778899999999999999999766554
No 465
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.20 E-value=3.3e-10 Score=128.58 Aligned_cols=184 Identities=14% Similarity=0.134 Sum_probs=118.2
Q ss_pred CCceeeeecccCCcccccccccCCC-CcccCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceee-------ecccC
Q psy17091 614 NRNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIV-------MMGMG 685 (1250)
Q Consensus 614 ~~~t~c~ssq~GC~~~C~fC~t~~~-~~~r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~iv-------fmg~G 685 (1250)
.+.+++|.+|-||+.+|.||..+.. |..|..++++|++++..+.+. + +..|+ ++|.|
T Consensus 2 ~~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~-G--------------~~ei~l~g~~~~~yG~~ 66 (304)
T 2qgq_A 2 ERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKE-G--------------KKEIILVAQDTTSYGID 66 (304)
T ss_dssp CCSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHT-T--------------CCEEEEECTTGGGTTHH
T ss_pred CCEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHC-C--------------CcEEEEEeEcccccCCC
Confidence 4678999999999999999998753 566889999999999765442 1 23344 45555
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCCceEEEE-ecC--chhHHHHhhhhCC---CeEEEEccCCChhhhhccCCCCCCCC
Q psy17091 686 EPLLNYKSTIGALKLILSDHAYGLSRRHVILS-TSG--IIPMIDKLAQECP---VELAVSLHASNNNLRNKLVPISKKYP 759 (1250)
Q Consensus 686 Epl~n~~~v~~~~~~~~~~~~~~~~~~~itvs-T~g--~~~~i~~~~~~~~---~~la~sl~~~~~~~r~~~~p~~~~~~ 759 (1250)
+|. .+.+.+.++.+.+..|+ ..+.++ |.+ +.+.+-+.+.+.+ ..+.+++.+.+++.++++ +++++
T Consensus 67 ~~~--~~~l~~Ll~~l~~~~gi----~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m---~r~~t 137 (304)
T 2qgq_A 67 LYR--KQALPDLLRRLNSLNGE----FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLM---GRTKS 137 (304)
T ss_dssp HHS--SCCHHHHHHHHHTSSSS----CEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHT---TCCSC
T ss_pred CCc--HHHHHHHHHHHHhcCCC----cEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHh---CCCCC
Confidence 552 23456666666553232 245554 333 3344333333333 347789999999999986 68899
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEEEEeccC-CCCHHHHHHHHHHhhcCCCccc-eeEeeeccCCCCCCCC
Q psy17091 760 LKELILACHRYITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTS-CKINLIPFNCFPNSNL 827 (1250)
Q Consensus 760 ~~~l~~~~~~~~~~~~~~~v~~e~~li~g~-nd~~~~~~~l~~~~~~~~~~~~-~~vnlip~n~~~~~~~ 827 (1250)
.++++++++...+... .+.+..-+|-|+ ++++++..++.++++. +. .++++.||.|.++.+.
T Consensus 138 ~e~~~~~i~~l~~~~~--gi~i~~~~IvG~PgEt~ed~~~t~~~l~~----l~~~~v~~~~~~p~pgT~~ 201 (304)
T 2qgq_A 138 SEELKKMLSSIRERFP--DAVLRTSIIVGFPGETEEDFEELKQFVEE----IQFDKLGAFVYSDEEGTVA 201 (304)
T ss_dssp HHHHHHHHHHHHHHCT--TCEEEEEEEECCTTCCHHHHHHHHHHHHH----HCCSEEEEEECCC------
T ss_pred HHHHHHHHHHHHhhCC--CCEEEEEEEEeCCCCCHHHHHHHHHHHHH----cCCCEEEEEEeeCCCCChh
Confidence 9999999987765422 378888899998 8999999999999998 54 4899999999887764
No 466
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.18 E-value=1e-11 Score=138.34 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=100.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHH-----cCCCcccccCCCcc----------------eeeeEEEE----------------
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLT-----NSRDALVANYPGLT----------------RDRHYGEG---------------- 45 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~-----~~~~~~v~~~~~~T----------------~~~~~~~~---------------- 45 (1250)
+.++++|++|||||||++.|. +.+..++...|+.+ ++......
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEK 94 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhhh
Confidence 478889999999999999998 77766666555421 11100000
Q ss_pred ---------EE-CCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHH-H----HHHHHhc
Q psy17091 46 ---------YI-GKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKL-I----TNFLRKS 110 (1250)
Q Consensus 46 ---------~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~-~----~~~l~~~ 110 (1250)
.+ .+..+.||||||+.+.. .. ..+......++.+ +++++++|+.......+.. . .......
T Consensus 95 ~~~l~~~l~~~~~~~d~iiiDtpG~~~~~--~~-~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 95 FNEYLNKILRLEKENDYVLIDTPGQMETF--LF-HEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECCSSHHHH--HH-SHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCEEEEeCCCccchh--hh-hhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 00 12479999999976322 00 1112233345566 8999999987654444322 1 1223345
Q ss_pred CCCEEEEEeCCCCCCCccc---hhH-----------------------------HhcCCC-CcEecccccCCchhHHHHH
Q psy17091 111 GQPIVLVINKSENINSSIS---LDF-----------------------------YELGIG-NPHIISALYGNGIKNFLEN 157 (1250)
Q Consensus 111 ~~p~ilv~NK~D~~~~~~~---~~~-----------------------------~~~~~~-~~~~iSA~~g~gi~~L~~~ 157 (1250)
++|+++|+||+|+...... .++ ...+.. +++++||++|.|+++|++.
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 250 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 250 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHH
Confidence 7899999999998754321 111 122332 6899999999999999999
Q ss_pred HHHhhCCc
Q psy17091 158 ILTIELPY 165 (1250)
Q Consensus 158 i~~~l~~~ 165 (1250)
+.+.+...
T Consensus 251 i~~~~~~~ 258 (262)
T 1yrb_A 251 AYEHYCTC 258 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 98877543
No 467
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=8.5e-11 Score=138.05 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=79.1
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCccccc------CCCcc-eeeeEEEEEECC--EEEEEEecCCCCcchh-----hHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN------YPGLT-RDRHYGEGYIGK--KSFIIIDTGGFEPEVK-----KGI 68 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~------~~~~T-~~~~~~~~~~~~--~~~~liDTpG~~~~~~-----~~~ 68 (1250)
.+|+|+|++|||||||+|+|++......+. .+.++ ++......+..+ ..+++|||||+..... ..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 478999999999999999999876421110 11111 111111112223 3789999999864311 122
Q ss_pred HHHHHHHHHHHh-----------hc--CCEEEEEEeCC-CCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccch----
Q psy17091 69 MHEMTKQTKQAI-----------IE--SDIIIFIVDGR-QGLVEQDKLITNFLRKSGQPIVLVINKSENINSSISL---- 130 (1250)
Q Consensus 69 ~~~~~~~~~~~~-----------~~--ad~il~v~D~~-~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~~---- 130 (1250)
...+..+...++ .+ +|++|++++.+ .++.+.+..+.+.+.. +.|+|+|+||+|+.......
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k~ 190 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKK 190 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHHH
Confidence 222222222222 23 45677777765 5778877777777764 78999999999987654331
Q ss_pred ---hH-HhcCCCCcEecccccCCchhHHHHHHHHhh
Q psy17091 131 ---DF-YELGIGNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 131 ---~~-~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
+. ...++ .++.+||+++.++.+++..+...+
T Consensus 191 ~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 191 QIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHTC-CCCCCC-----------------C
T ss_pred HHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence 11 23454 678999999999988776665443
No 468
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.13 E-value=1.6e-10 Score=136.63 Aligned_cols=135 Identities=17% Similarity=0.154 Sum_probs=110.1
Q ss_pred HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC-CCC
Q psy17091 836 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGP 914 (1250)
Q Consensus 836 ~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P 914 (1250)
+.+.+.+.++|+. .|.+|.....+.+-+ .++++.+.++||++.| +.++|||+.|++++++++....++ ++|
T Consensus 201 ~~~~~~~~~~Gy~-ev~tP~l~~~~l~~~---sG~~~~f~~emy~~~d----~~l~LrPt~e~~~~~~~~~~~~s~~~LP 272 (455)
T 2dq0_A 201 RFALDRLIEKGFT-PVIPPYMVRRFVEEG---STSFEDFEDVIYKVED----EDLYLIPTAEHPLAGMHANEILDGKDLP 272 (455)
T ss_dssp HHHHHHHHHTTCE-EEECCSEECHHHHHT---TSCTTHHHHTCCBBTT----SSCEECSSTHHHHHHTTTTEEEETTTCS
T ss_pred HHHHHHHHHcCCE-EEeCCcccCHHHHHh---cCCCCCChHhhCeecC----CcEEEcCcCcHHHHHHHHhCccCchhCC
Confidence 3466677889999 899999999998863 3566677889999865 479999999999999999765544 789
Q ss_pred eeEEEEeceeecCCCCCC-------CCCceEEeeEEEecCCCchh--chHHHHHHHHHHHHCCCCceEEEeCCC
Q psy17091 915 KRLWYSGPMFRHERPQYG-------RYRQFYQIGVEAIGFPGPDI--DAELIIMCSRLWKNLNLKNICLELNSI 979 (1250)
Q Consensus 915 ~r~yy~g~VfR~e~~~~g-------r~REf~Q~g~eiig~~~~~a--daEvi~l~~~~l~~lgl~~~~i~i~~~ 979 (1250)
+|+|++|+|||+|.++.| |.|||+|.++++|+.+.... -.|++.++.++|+.||++ +.+....+
T Consensus 273 lr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~-yrv~~~~~ 345 (455)
T 2dq0_A 273 LLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIP-YRVVNICT 345 (455)
T ss_dssp EEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCC-EEEEECCG
T ss_pred EEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCc-eEEEECCC
Confidence 999999999999987655 99999999999999774221 238899999999999995 76666543
No 469
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.12 E-value=4.1e-11 Score=153.80 Aligned_cols=113 Identities=21% Similarity=0.202 Sum_probs=87.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccc---------------cCCCcceeeeEEEEEEC----------------CEE
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVA---------------NYPGLTRDRHYGEGYIG----------------KKS 51 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~---------------~~~~~T~~~~~~~~~~~----------------~~~ 51 (1250)
++|+|+|++|+|||||+|+|+.....+.. ..+++|.......+.|. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 58999999999999999999865322221 13455665555555554 678
Q ss_pred EEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCC
Q psy17091 52 FIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124 (1250)
Q Consensus 52 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~ 124 (1250)
+.||||||+.+.. ..+..+++.+|++|+|+|+.++...+...+...+...+.|+++|+||+|+.
T Consensus 100 i~liDTPG~~df~---------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 100 INLIDSPGHVDFS---------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEECCCCCCSSC---------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred EEEEECcCchhhH---------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 9999999987433 456677899999999999999888888776666667789999999999975
No 470
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.12 E-value=8.7e-11 Score=136.47 Aligned_cols=92 Identities=22% Similarity=0.234 Sum_probs=74.5
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcC-----------------eeEEEEecCCCCCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNN-----------------KKYILIDTAGIRRR 243 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 243 (1250)
...+++|+|.||||||||+|+|++...+.++++|+||+++..+.+.+++ ..+.+|||||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 3579999999999999999999998766888999999999999888876 46899999998765
Q ss_pred CcchhhHHHHHHHHHHHhhccCcEEEEEecCCC
Q psy17091 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQ 276 (1250)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~ 276 (1250)
....+.+. ...+.+++.+|.+++|+|+..
T Consensus 99 ~s~~e~L~----~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLG----NAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSC----HHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHH----HHHHHHHHHHHHHHHHHhccc
Confidence 43322221 234567789999999999864
No 471
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.11 E-value=1.5e-10 Score=131.09 Aligned_cols=158 Identities=19% Similarity=0.161 Sum_probs=79.6
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccC--------CCcceeeeEEEEEEC--CEEEEEEecCCCCcch-----hhH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANY--------PGLTRDRHYGEGYIG--KKSFIIIDTGGFEPEV-----KKG 67 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~--------~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~-----~~~ 67 (1250)
.+|+++|++|||||||+|+|++......+.. +++..+......+.. ...+++|||||+.... ...
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~ 98 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence 5899999999999999999998632212111 111111111122222 2478999999983210 012
Q ss_pred HHHHHHHHHHHHhhc-------------CCEEEEEEeCCC-CCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc----
Q psy17091 68 IMHEMTKQTKQAIIE-------------SDIIIFIVDGRQ-GLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---- 129 (1250)
Q Consensus 68 ~~~~~~~~~~~~~~~-------------ad~il~v~D~~~-~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---- 129 (1250)
+...+..+...++.+ +++++++.+.+. ++.+.+.++.+.+. .+.++++|+||+|+....+.
T Consensus 99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~ 177 (301)
T 2qnr_A 99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLK 177 (301)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHHHH
Confidence 222222222233332 345666666544 46666655544443 35689999999998764332
Q ss_pred ---hhHH-hcCCCCcEecccccCCchhHHHHHHHHhhC
Q psy17091 130 ---LDFY-ELGIGNPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 130 ---~~~~-~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
.++. ..++ .++++||+++ |++++++.+.+.+.
T Consensus 178 ~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 178 KRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHTTC-CCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhh
Confidence 2222 4454 7899999999 99999998887653
No 472
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.10 E-value=4e-11 Score=138.72 Aligned_cols=157 Identities=20% Similarity=0.174 Sum_probs=83.3
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEEcCe-----------------eEEEEecCCCCCC
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-----------------KYILIDTAGIRRR 243 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~ 243 (1250)
..++|+|+|.||||||||+|+|++... .++++|++|.++....+.+++. .+.+|||||+.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 358899999999999999999999765 7789999999998888777642 4899999999764
Q ss_pred CcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHHHHHHhc
Q psy17091 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323 (1250)
Q Consensus 244 ~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~l~ 323 (1250)
....+. .....+.+++.+|++++|+|+++. . .+.. +.....| +|++|.+..+......+.+.+.+.
T Consensus 100 as~~~g----lg~~~l~~ir~aD~Il~VvD~~~~---~--~i~~-v~~~~dP----~~di~~i~~El~l~d~~~~~k~~~ 165 (396)
T 2ohf_A 100 AHNGQG----LGNAFLSHISACDGIFHLTRAFED---D--DITH-VEGSVDP----IRDIEIIHEELQLKDEEMIGPIID 165 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC------------------CTT----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhH----HHHHHHHHHHhcCeEEEEEecCCC---c--chhh-hcCCCCh----HHHHHHhhhhhhhhhHHHHHHhhh
Confidence 321111 112456788999999999999752 1 1111 2222244 566666543322223344445454
Q ss_pred cCCCCeEEEee--cCCCCChHHHHHHHHHHHhhc
Q psy17091 324 FLSFAMFNFIS--AIKLNNINSFMESINHVYDSS 355 (1250)
Q Consensus 324 ~~~~~~iv~iS--A~~g~gv~~l~~~i~~~~~~~ 355 (1250)
..... ..| ++.+.+..++++.+.+.+++.
T Consensus 166 ~~~k~---~~~~g~~~~~~~~~ll~~i~~~L~e~ 196 (396)
T 2ohf_A 166 KLEKV---AVRGGDKKLKPEYDIMCKVKSWVIDQ 196 (396)
T ss_dssp TTCSC---C--------CCHHHHHHHHHHHTTC-
T ss_pred hhhhh---hhcccchhhhhHHHHHHHHHHHHHhc
Confidence 43322 234 577778889999888877665
No 473
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.10 E-value=2.8e-11 Score=140.05 Aligned_cols=148 Identities=21% Similarity=0.214 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC-----------------EEEEEEecCCCCcchh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-----------------KSFIIIDTGGFEPEVK 65 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~-----------------~~~~liDTpG~~~~~~ 65 (1250)
.+|+|||.||||||||+|+|++.+. .++++|++|.+...+.+.+.+ ..+.+|||||+.....
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 5799999999999999999999875 588999999999998887754 2599999999874321
Q ss_pred hHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHH--hcCCCCc
Q psy17091 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFY--ELGIGNP 140 (1250)
Q Consensus 66 ~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~--~~~~~~~ 140 (1250)
. .+.+..++..+++++|++++|+|+.+. ..+.. +.....| +|++|....+-. .+.+ .+..-..
T Consensus 102 ~--~~glg~~~l~~ir~aD~Il~VvD~~~~-----~~i~~-v~~~~dP----~~di~~i~~El~l~d~~~~~k~~~~~~k 169 (396)
T 2ohf_A 102 N--GQGLGNAFLSHISACDGIFHLTRAFED-----DDITH-VEGSVDP----IRDIEIIHEELQLKDEEMIGPIIDKLEK 169 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC------------------CTT----HHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred h--hhHHHHHHHHHHHhcCeEEEEEecCCC-----cchhh-hcCCCCh----HHHHHHhhhhhhhhhHHHHHHhhhhhhh
Confidence 1 123334677888999999999999741 12211 2222233 344443322111 1111 1111122
Q ss_pred Eecc--cccCCchhHHHHHHHHhhC
Q psy17091 141 HIIS--ALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 141 ~~iS--A~~g~gi~~L~~~i~~~l~ 163 (1250)
...| ++.+.+..++++.+...++
T Consensus 170 ~~~~~g~~~~~~~~~ll~~i~~~L~ 194 (396)
T 2ohf_A 170 VAVRGGDKKLKPEYDIMCKVKSWVI 194 (396)
T ss_dssp CC--------CCHHHHHHHHHHHTT
T ss_pred hhhcccchhhhhHHHHHHHHHHHHH
Confidence 3444 5667778888888877664
No 474
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.10 E-value=3.3e-10 Score=143.31 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=87.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCC------------cc-----cccCCCcceeeeEEEEEEC-------CEEEEEEecC
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRD------------AL-----VANYPGLTRDRHYGEGYIG-------KKSFIIIDTG 58 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~------------~~-----v~~~~~~T~~~~~~~~~~~-------~~~~~liDTp 58 (1250)
..|+|+|+..+|||||..+|+.... .. .....|+|.......+.|. +..++|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 4799999999999999999973211 00 1223467777767777774 5789999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCC
Q psy17091 59 GFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN 125 (1250)
Q Consensus 59 G~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~ 125 (1250)
|+.+ |..++..+++-+|++|+|+|+.+++..+.+.+++.+.+.+.|.++|+||+|...
T Consensus 94 GHvD---------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 94 GHVD---------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp SCTT---------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred CCcc---------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 9874 446678889999999999999999999999999999999999999999999754
No 475
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.09 E-value=1.3e-10 Score=126.05 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=87.8
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCc-----ceeccCCCCcceeeE------EEEEEEc---------------------
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGEN-----RVITYDTPGTTRDSI------KSLFEYN--------------------- 228 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~-----~~~~~~~~gtT~~~~------~~~~~~~--------------------- 228 (1250)
+..+|+|+|.+|||||||+++|+... ...+...++++.|.. ...+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 36899999999999999999998542 222222233222210 0011111
Q ss_pred -CeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCC
Q psy17091 229 -NKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSII 307 (1250)
Q Consensus 229 -~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~ 307 (1250)
+..+.++||+|..... ..+ -...+..+.++|+..+...... .....++|.++|+||+|+.+
T Consensus 117 ~~~d~~~id~~g~i~~~------~s~--------~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP------ADF--------DLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLAD 178 (226)
T ss_dssp GGCSEEEEECCSCSSGG------GGC--------CCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHH
T ss_pred CCCCEEEEeCCCCccCc------chh--------hhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCc
Confidence 1156667776642110 000 0123455677775433211110 11113689999999999965
Q ss_pred cc--chHHHHHHHHHHhccCCCCeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 308 HN--QRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 308 ~~--~~~~~~~~l~~~l~~~~~~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
.. ...+..+.+... ....+++++||++|.|++++++.+.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 179 AVGADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHTCCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 32 233333333332 124689999999999999999999877654
No 476
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.08 E-value=1.9e-10 Score=134.82 Aligned_cols=129 Identities=18% Similarity=0.193 Sum_probs=106.8
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC-CCCe
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGPK 915 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~ 915 (1250)
.+.+.+.++|+. .|.+|.....+.+.+ +++++.+.++||++.| +.++|+|..|+++++++.....++ ++|+
T Consensus 175 ~~~~~~~~~Gy~-ev~tP~l~~~~l~~~---sG~~~~f~~emy~~~d----~~l~L~Pt~e~~~~~~~~~~~~s~~~LPl 246 (421)
T 1ses_A 175 FAMDFMARRGFL-PMTLPSYAREKAFLG---TGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEALPL 246 (421)
T ss_dssp HHHHHHHHTTCE-EEECCSEEEHHHHHH---HTCTTTTGGGSCBBTT----SSEEECSSTHHHHHHTTTTCEEEGGGCSE
T ss_pred HHHHHHHHcCCE-EEeCCceecHHHHHh---cCCCCcCchhcEEEcC----CeEEEeecCcHHHHHHhcccccCchhCCE
Confidence 466677789998 899999999888764 3555667889999965 479999999999999988765444 7899
Q ss_pred eEEEEeceeecC-----CCCCC--CCCceEEeeEEEecCCC-chhc---hHHHHHHHHHHHHCCCCceEE
Q psy17091 916 RLWYSGPMFRHE-----RPQYG--RYRQFYQIGVEAIGFPG-PDID---AELIIMCSRLWKNLNLKNICL 974 (1250)
Q Consensus 916 r~yy~g~VfR~e-----~~~~g--r~REf~Q~g~eiig~~~-~~ad---aEvi~l~~~~l~~lgl~~~~i 974 (1250)
|+|++|++||+| ++..| |.|||+|.+++.|+.++ ..++ .|++.++.++|+.||++ +.+
T Consensus 247 r~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~-~rv 315 (421)
T 1ses_A 247 RYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP-YRL 315 (421)
T ss_dssp EEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC-EEE
T ss_pred EEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCc-eEE
Confidence 999999999999 66778 99999999999999872 3444 48899999999999995 553
No 477
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.07 E-value=2e-10 Score=131.39 Aligned_cols=136 Identities=23% Similarity=0.316 Sum_probs=89.6
Q ss_pred HhhcCCEEEEEEeCCCCCChhhHHHHHHHH---hcCCCEEEEEeCCCCCCCcc---c----hhHHhcCCCCcEecccccC
Q psy17091 79 AIIESDIIIFIVDGRQGLVEQDKLITNFLR---KSGQPIVLVINKSENINSSI---S----LDFYELGIGNPHIISALYG 148 (1250)
Q Consensus 79 ~~~~ad~il~v~D~~~~~~~~~~~~~~~l~---~~~~p~ilv~NK~D~~~~~~---~----~~~~~~~~~~~~~iSA~~g 148 (1250)
.+.++|.+++| |+..+... ...+.++|. ..++|.++|+||+|+.+... . ..+...|+ +++++||+++
T Consensus 127 i~anvD~v~iv-~a~~P~~~-~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~-~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELS-LNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGY-RVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEE-EESTTTCC-HHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTC-CEEECBTTTT
T ss_pred HHhcCCEEEEE-EeCCCCCC-HHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence 46899999976 55554333 334556653 46899999999999986543 1 22335676 7899999999
Q ss_pred CchhHHHHHHHHhhCCcccccccccccccccceeeEEEEEeCCCChhhHHHHHHhCCcc-eeccCCC---C----cceee
Q psy17091 149 NGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENR-VITYDTP---G----TTRDS 220 (1250)
Q Consensus 149 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~ivG~~nvGKSSLin~l~~~~~-~~~~~~~---g----tT~~~ 220 (1250)
.|+++|...+. .-.++|+|++|||||||+|.|+|... ..++... | +|+..
T Consensus 204 ~gl~~L~~~~~----------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~ 261 (358)
T 2rcn_A 204 DGLKPLEEALT----------------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAA 261 (358)
T ss_dssp BTHHHHHHHHT----------------------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCC
T ss_pred cCHHHHHHhcC----------------------CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEE
Confidence 99998876431 12489999999999999999998765 4433322 2 33332
Q ss_pred EEEEEEEcCeeEEEEecCCCCC
Q psy17091 221 IKSLFEYNNKKYILIDTAGIRR 242 (1250)
Q Consensus 221 ~~~~~~~~~~~~~liDTpG~~~ 242 (1250)
.... . .....++||||+..
T Consensus 262 ~i~~--v-~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 262 RLYH--F-PHGGDVIDSPGVRE 280 (358)
T ss_dssp EEEE--C-TTSCEEEECHHHHT
T ss_pred EEEE--E-CCCCEecCcccHHH
Confidence 2221 1 22345799999843
No 478
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=135.91 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=96.6
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCccee---ccCCCCcceeeEEEEEEEcC--eeEEEEecCCCCCCCcch---hhHHHH
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVI---TYDTPGTTRDSIKSLFEYNN--KKYILIDTAGIRRRNKTF---EVIEKF 253 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~---~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~---~~~e~~ 253 (1250)
.++++|+|++|+|||||+|.|+|..... ....++.++..+...+...+ ..++++||||+....... ..+..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4679999999999999999999874321 12235555554333333222 268899999997542111 111111
Q ss_pred HHH---HHHHh----------hccC--c-EEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHHHHHH
Q psy17091 254 SVI---KTLKS----------ILEA--N-VVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNN 317 (1250)
Q Consensus 254 ~~~---~~~~~----------~~~a--d-~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~ 317 (1250)
... ..+.. +..+ | ++++++|++.+++..|..+++.+. .+.|+|+|+||+|.+.+.+...+.+.
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~ 200 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIK 200 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHH
Confidence 111 11111 1222 2 477888999999999999999887 78999999999999988777778788
Q ss_pred HHHHhccCCCCeEEEeec
Q psy17091 318 IKKKLNFLSFAMFNFISA 335 (1250)
Q Consensus 318 l~~~l~~~~~~~iv~iSA 335 (1250)
+.+.+.. .+++++++|.
T Consensus 201 I~~~L~~-~gi~I~~is~ 217 (427)
T 2qag_B 201 ITSELVS-NGVQIYQFPT 217 (427)
T ss_dssp HHHHHBT-TBCCCCCCC-
T ss_pred HHHHHHH-cCCcEEecCC
Confidence 8876665 3567888885
No 479
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.05 E-value=5.2e-12 Score=147.20 Aligned_cols=144 Identities=18% Similarity=0.198 Sum_probs=93.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcC-----CCcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcchhhHHHHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNS-----RDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTK 77 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~-----~~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 77 (1250)
.+|+++|.||||||||+|+|++. ....+++.||+|++..... +. ..+.++||||+..... +.+.+.....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~--~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LE-SGATLYDTPGIINHHQ--MAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CS-TTCEEEECCSCCCCSS--GGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eC-CCeEEEeCCCcCcHHH--HHHHHhHHHH
Confidence 46999999999999999999987 5566899999999877543 22 3489999999864320 0111112222
Q ss_pred HHh---hcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHHhcCC-CCcEecccccCCc
Q psy17091 78 QAI---IESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYELGI-GNPHIISALYGNG 150 (1250)
Q Consensus 78 ~~~---~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~~~~~-~~~~~iSA~~g~g 150 (1250)
..+ ...|.+++++|+.+..........+++...+.|+++++||+|....... .+++...+ ....+.++....+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~~~ 317 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRYAAE 317 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGGTTT
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchhhhh
Confidence 223 6789999999985321111111133444557899999999998765544 44553222 2445566655444
Q ss_pred h
Q psy17091 151 I 151 (1250)
Q Consensus 151 i 151 (1250)
+
T Consensus 318 ~ 318 (369)
T 3ec1_A 318 F 318 (369)
T ss_dssp C
T ss_pred c
Confidence 4
No 480
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.05 E-value=4.6e-11 Score=129.25 Aligned_cols=147 Identities=12% Similarity=0.028 Sum_probs=93.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHcC-----CCcccccCCCcceeee--------EEEE------------------EECCE
Q psy17091 2 KPVLVLVGRPNVGKSTLFNRLTNS-----RDALVANYPGLTRDRH--------YGEG------------------YIGKK 50 (1250)
Q Consensus 2 ~~~I~lvG~~nvGKSSL~N~l~~~-----~~~~v~~~~~~T~~~~--------~~~~------------------~~~~~ 50 (1250)
.++|+++|.+|||||||+|+|++. +.+.+...+++|.|.. ...+ .+.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 368999999999999999999864 2334444455432210 0011 11345
Q ss_pred EEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCc--c
Q psy17091 51 SFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSS--I 128 (1250)
Q Consensus 51 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~--~ 128 (1250)
.+.+|||+|+.... .. +...++.+++|+|++.+... ...+....+.|.++|+||+|+.+.. .
T Consensus 110 d~iiidt~G~~~~~-~~-----------~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~~~~ 173 (221)
T 2wsm_A 110 DLLLIENVGNLICP-VD-----------FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAVGAD 173 (221)
T ss_dssp SEEEEEEEEBSSGG-GG-----------CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHHTCC
T ss_pred CEEEEeCCCCCCCC-ch-----------hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcchhhH
Confidence 78899999952111 00 01256889999998875322 1222333468999999999986431 1
Q ss_pred c---hhHH-hcC-CCCcEecccccCCchhHHHHHHHHhhCC
Q psy17091 129 S---LDFY-ELG-IGNPHIISALYGNGIKNFLENILTIELP 164 (1250)
Q Consensus 129 ~---~~~~-~~~-~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 164 (1250)
. .+.. ..+ ..+++++||++|.|++++++.+.+.+..
T Consensus 174 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 174 VEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 1 2222 223 2367999999999999999999887643
No 481
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.01 E-value=9.8e-11 Score=134.67 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=89.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHH------cCCCcccccCCCccee-------------------------------------
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLT------NSRDALVANYPGLTRD------------------------------------- 39 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~------~~~~~~v~~~~~~T~~------------------------------------- 39 (1250)
..|+|+|++|+|||||+|.|+ +.+..+.+..++.++.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~ 135 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAK 135 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHH
Confidence 379999999999999999998 4444444433332221
Q ss_pred eeEE--EEEECCEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEE
Q psy17091 40 RHYG--EGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117 (1250)
Q Consensus 40 ~~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv 117 (1250)
.... .+...+..+.||||||+.... . .....+|++++|+|+..+.. ...+...+. ..+.++|
T Consensus 136 ~~e~~~~~~~~~~~~iliDT~Gi~~~~-~-----------~v~~~~d~vl~v~d~~~~~~--~~~i~~~i~--~~~~ivv 199 (337)
T 2qm8_A 136 TRETMLLCEAAGFDVILVETVGVGQSE-T-----------AVADLTDFFLVLMLPGAGDE--LQGIKKGIF--ELADMIA 199 (337)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSSSCH-H-----------HHHTTSSEEEEEECSCC--------CCTTHH--HHCSEEE
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCcch-h-----------hHHhhCCEEEEEEcCCCccc--HHHHHHHHh--ccccEEE
Confidence 1000 012357899999999987432 0 12368999999999864311 001111111 2366778
Q ss_pred EeCCCCCCCccc-----hhHHh----cC------CCCcEecccccCCchhHHHHHHHHhhC
Q psy17091 118 INKSENINSSIS-----LDFYE----LG------IGNPHIISALYGNGIKNFLENILTIEL 163 (1250)
Q Consensus 118 ~NK~D~~~~~~~-----~~~~~----~~------~~~~~~iSA~~g~gi~~L~~~i~~~l~ 163 (1250)
+||+|+...... .++.. .. ..+++++||+++.|+++|++.+.+...
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899997543221 11111 11 246789999999999999999987653
No 482
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.01 E-value=4.5e-10 Score=134.59 Aligned_cols=182 Identities=18% Similarity=0.220 Sum_probs=110.5
Q ss_pred eeeEEEEEeCCCChhhHHHHHHh------CCcceeccCCC---Cc--------c---eeeEEE---------------EE
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLL------GENRVITYDTP---GT--------T---RDSIKS---------------LF 225 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~------~~~~~~~~~~~---gt--------T---~~~~~~---------------~~ 225 (1250)
++..|+|+|.+||||||+++.|. |.++..++..+ +. + .+.... .+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999 77766664322 11 0 010000 01
Q ss_pred EEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcE-EEEEeccc
Q psy17091 226 EYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSL-IVCVNKWD 304 (1250)
Q Consensus 226 ~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~-iiv~NK~D 304 (1250)
.+.+..++||||||..... ....++.. ....+ ..+|.+++|+|++.+.. ....+..+.+. +|+ ++|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~--~~l~~el~--~~~~~-i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQE--DSLFEEML--QVANA-IQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTC--HHHHHHHH--HHHHH-HCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccc--hhHHHHHH--HHHhh-hcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCc
Confidence 1256789999999986532 11112211 11122 37899999999998754 44445544443 775 89999999
Q ss_pred cCCccchHHHHHHHHHHhc--------------cCCCCeEEEeecCCCCC-hHHHHHHHHHHHh----hcccccChhH--
Q psy17091 305 SIIHNQRKIIKNNIKKKLN--------------FLSFAMFNFISAIKLNN-INSFMESINHVYD----SSIIHLSTSR-- 363 (1250)
Q Consensus 305 l~~~~~~~~~~~~l~~~l~--------------~~~~~~iv~iSA~~g~g-v~~l~~~i~~~~~----~~~~~~~~~~-- 363 (1250)
....... ... +...++ ...+.|.+++||.+|.| +++|++++.+... ....++.++.
T Consensus 252 ~~~~~g~--~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~~~ 328 (504)
T 2j37_W 252 GHAKGGG--ALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFT 328 (504)
T ss_dssp SCCCCTH--HHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSGGG
T ss_pred cccchHH--HHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 8754321 111 111111 11244667789999999 9999999987732 3334555554
Q ss_pred HHHHHHHHHH
Q psy17091 364 ITRALISAIK 373 (1250)
Q Consensus 364 l~~~l~~~~~ 373 (1250)
+++++..+..
T Consensus 329 l~d~~~~l~~ 338 (504)
T 2j37_W 329 LRDMYEQFQN 338 (504)
T ss_dssp GCCCHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 483
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.99 E-value=1.3e-11 Score=143.67 Aligned_cols=142 Identities=18% Similarity=0.143 Sum_probs=86.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCC------CcccccCCCcceeeeEEEEEECCEEEEEEecCCCCcch--hhHHHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSR------DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV--KKGIMHEMTK 74 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~------~~~v~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~ 74 (1250)
.+|+++|.||||||||+|+|++.. .+.++..|++|++..... +. ..+.++||||+.... .+.+..+...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD-EESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 469999999999999999999852 445789999999877644 22 238999999996543 1112211111
Q ss_pred HHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc---hhHHhcCCC-CcEecccccC
Q psy17091 75 QTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS---LDFYELGIG-NPHIISALYG 148 (1250)
Q Consensus 75 ~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~---~~~~~~~~~-~~~~iSA~~g 148 (1250)
. .......+.++|++|+.+.....+....+++...+.|+++|+||+|....... .++++..++ ...+.++...
T Consensus 238 ~-~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~ 314 (368)
T 3h2y_A 238 L-ITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTPEEL 314 (368)
T ss_dssp H-HSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSCHHHH
T ss_pred H-hccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCCccCCCchhhH
Confidence 1 11136788999999984321111211233444557899999999998765544 445532221 4455555443
No 484
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.99 E-value=7.6e-10 Score=127.45 Aligned_cols=125 Identities=14% Similarity=0.227 Sum_probs=84.3
Q ss_pred eeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCCCC----------C-HHHHHHHH
Q psy17091 219 DSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNI----------S-AQDINIAN 287 (1250)
Q Consensus 219 ~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~~~----------~-~~d~~~~~ 287 (1250)
......+.+++..+.+|||+|+.+.... ...+++.++++|+|+|.++.- + ..-..++.
T Consensus 182 Gi~~~~~~~~~~~l~iwDt~GQe~~r~~-----------w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~ 250 (353)
T 1cip_A 182 GIVETHFTFKDLHFKMFDVGGQRSERKK-----------WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 250 (353)
T ss_dssp SEEEEEEEETTEEEEEEEECCSGGGGGG-----------GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHH
T ss_pred ceEEEEEeeCCeeEEEEeCCCchhhhHH-----------HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHH
Confidence 3445567778889999999999543211 135778999999999998731 1 22233455
Q ss_pred HHHH----cCCcEEEEEeccccCCc-----------------cchHHHHHHHHHHhcc------CCCCeEEEeecCCCCC
Q psy17091 288 FIYE----SGRSLIVCVNKWDSIIH-----------------NQRKIIKNNIKKKLNF------LSFAMFNFISAIKLNN 340 (1250)
Q Consensus 288 ~~~~----~~~p~iiv~NK~Dl~~~-----------------~~~~~~~~~l~~~l~~------~~~~~iv~iSA~~g~g 340 (1250)
.+.. .+.|+|+|+||+|+.+. ...++..+.+...+.. ....+++++||++|.|
T Consensus 251 ~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~n 330 (353)
T 1cip_A 251 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKN 330 (353)
T ss_dssp HHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHH
T ss_pred HHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchh
Confidence 5544 47899999999998532 1223333333322111 2346889999999999
Q ss_pred hHHHHHHHHHHHhh
Q psy17091 341 INSFMESINHVYDS 354 (1250)
Q Consensus 341 v~~l~~~i~~~~~~ 354 (1250)
|+++|+++.+.+..
T Consensus 331 V~~vF~~v~~~i~~ 344 (353)
T 1cip_A 331 VQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877644
No 485
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.93 E-value=5.4e-09 Score=118.39 Aligned_cols=128 Identities=14% Similarity=0.156 Sum_probs=85.5
Q ss_pred ceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCC-------CCCC----HHHHHH
Q psy17091 217 TRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQ-------QNIS----AQDINI 285 (1250)
Q Consensus 217 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~-------~~~~----~~d~~~ 285 (1250)
|.......+..++..+.+|||+|+ +.+... ...++++++++|+|+|.+ +.-+ .....+
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQ----------e~~R~~-w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~ 222 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQ----------RSERRK-WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKAL 222 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCS----------HHHHTT-GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHH
T ss_pred eeeEEEEEEEeeceeeEEEEcCCc----------hhHHHH-HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHH
Confidence 344455677788899999999999 333322 236789999999999765 2111 122344
Q ss_pred HHHHHH----cCCcEEEEEeccccCCcc------------------chHHHHHHHHHHhcc-----CCCCeEEEeecCCC
Q psy17091 286 ANFIYE----SGRSLIVCVNKWDSIIHN------------------QRKIIKNNIKKKLNF-----LSFAMFNFISAIKL 338 (1250)
Q Consensus 286 ~~~~~~----~~~p~iiv~NK~Dl~~~~------------------~~~~~~~~l~~~l~~-----~~~~~iv~iSA~~g 338 (1250)
+..+.. .+.|+++++||+|+.++. ..++..+.+...+.. .....++++||+++
T Consensus 223 ~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~ 302 (327)
T 3ohm_A 223 FRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT 302 (327)
T ss_dssp HHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH
T ss_pred HHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC
Confidence 555543 468999999999986421 233333333333321 12457899999999
Q ss_pred CChHHHHHHHHHHHhhc
Q psy17091 339 NNINSFMESINHVYDSS 355 (1250)
Q Consensus 339 ~gv~~l~~~i~~~~~~~ 355 (1250)
.||+.+|+.+.+.+...
T Consensus 303 ~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 303 ENIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876543
No 486
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.92 E-value=5.1e-09 Score=116.34 Aligned_cols=142 Identities=20% Similarity=0.325 Sum_probs=89.5
Q ss_pred eeEEEEEeCCCChhhHHHHHHhCCcceecc-------CCCCcceeeEEEE-EEEcC--eeEEEEecCCCCCCCcc---hh
Q psy17091 182 YIKVAIVGKPNVGKSTLINSLLGENRVITY-------DTPGTTRDSIKSL-FEYNN--KKYILIDTAGIRRRNKT---FE 248 (1250)
Q Consensus 182 ~~~i~ivG~~nvGKSSLin~l~~~~~~~~~-------~~~gtT~~~~~~~-~~~~~--~~~~liDTpG~~~~~~~---~~ 248 (1250)
.++++++|++|+|||||+|.|+|......+ +.+.++....... ....+ ..++++|+||+...... ..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999975433221 1222222111111 11111 36789999998654321 12
Q ss_pred hHHHHHHHHHHH--------------hhccCcEEEEEecCC-CCCCHHHHHHHHHHHHcCCcEEEEEeccccCCccchHH
Q psy17091 249 VIEKFSVIKTLK--------------SILEANVVILLLDAQ-QNISAQDINIANFIYESGRSLIVCVNKWDSIIHNQRKI 313 (1250)
Q Consensus 249 ~~e~~~~~~~~~--------------~~~~ad~vllviD~~-~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~ 313 (1250)
.+..+....... .+..++++++++|.. .+++..|..+++.+.+. +++|+|+||+|.....+...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~ 160 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSE 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHH
Confidence 233332211111 123368999999954 89999999999999887 99999999999998777766
Q ss_pred HHHHHHHHhcc
Q psy17091 314 IKNNIKKKLNF 324 (1250)
Q Consensus 314 ~~~~l~~~l~~ 324 (1250)
..+.+.+.+..
T Consensus 161 ~k~~i~~~l~~ 171 (270)
T 3sop_A 161 FKQRVRKELEV 171 (270)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 487
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=98.92 E-value=7.6e-09 Score=116.18 Aligned_cols=136 Identities=13% Similarity=0.224 Sum_probs=106.7
Q ss_pred CcHHHHHHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCC
Q psy17091 830 SKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNL 909 (1250)
Q Consensus 830 p~~e~i~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~ 909 (1250)
|.....+.+++.|..+|+. .|.+|.....+.+- .+.........+.+|.| | +..+|||++++++.+.++++..
T Consensus 78 ~~~~i~~~ir~~l~~~Gf~-EV~Tp~l~~~~~~~-~~~~~~~~p~~~~~~~~-~----~~~~LR~slsp~L~~~l~~n~~ 150 (290)
T 3qtc_A 78 YLGKLEREITRFFVDRGFL-EIKSPILIPLEYIE-RMGIDNDTELSKQIFRV-D----KNFCLRPMLTPNLYNYLRKLDR 150 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCE-EECCCSEEETHHHH-HTTCCTTSSGGGGCCEE-T----TTEEECSCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCE-EEECCceeeHHHHH-hcCCCcCCchhhhheee-C----CCeeEcccChHHHHHHHHHhhc
Confidence 3456677899999999999 89999988876542 22111112234567766 3 3689999999999999988654
Q ss_pred CCCCCeeEEEEeceeecCCCCCCCCCceEEeeEEEecCCCchhchHHHHHHHHHHHHCCCCceEEE
Q psy17091 910 IYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLE 975 (1250)
Q Consensus 910 ~~~~P~r~yy~g~VfR~e~~~~gr~REf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~i~ 975 (1250)
....|.|+|++|+|||+|....++++||+|++++++|.+. ...|+..++.++|+.+|+ ++.+.
T Consensus 151 ~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~--~f~elkg~le~ll~~lGl-~~~~~ 213 (290)
T 3qtc_A 151 ALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGC--TRENLESIITDFLNHLGI-DFKIV 213 (290)
T ss_dssp TSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTC--CHHHHHHHHHHHHHHHTC-CCEEE
T ss_pred cCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCCh--HHHHHHHHHHHHHHHcCC-CcEEe
Confidence 4578999999999999998777899999999999999764 467899999999999999 45543
No 488
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=98.91 E-value=5.3e-09 Score=117.13 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhCCCeEEEeccCccch-HHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCCC
Q psy17091 834 RIKIFAKILMNSGIFVTIRKIRGNDI-NAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYD 912 (1250)
Q Consensus 834 ~i~~f~~iL~~~G~~~~ir~~~g~~i-~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~ 912 (1250)
.++.+++.|.++|+. .|.+|..+.. +.+. .+...+. .++|.+. - .|+.+.||..-....-+.++.
T Consensus 21 i~~~ir~~f~~~GF~-EVeTP~l~~~~~~~~---~~~~~e~--a~~f~~~-~-~~~~~~L~~Spe~~~~~l~~~------ 86 (294)
T 1nnh_A 21 ILEYMTDFFVKEGFK-WLLPVIISPITDPLW---PDPAGEG--MEPAEVE-I-YGVKMRLTHSMILHKQLAIAM------ 86 (294)
T ss_dssp HHHHHHHHHHHTTCE-EECCCCEESCCCCCC---SCTTCCC--CCCCEEE-E-TTEEEEECSCSHHHHHHHHHT------
T ss_pred HHHHHHHHHHHCCCE-EEECCEEEEccchhc---cCCCCCc--ceeEEEE-c-CCCCEEeccChHHHHHHHhhc------
Confidence 456789999999998 8999998887 4322 1101111 4567642 1 345667763322233333321
Q ss_pred CCeeEEEEeceeecCCCCC--CCCC-ceEEeeEEEecCCCchhchHHHHHHHHHHHHCC
Q psy17091 913 GPKRLWYSGPMFRHERPQY--GRYR-QFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLN 968 (1250)
Q Consensus 913 ~P~r~yy~g~VfR~e~~~~--gr~R-Ef~Q~g~eiig~~~~~adaEvi~l~~~~l~~lg 968 (1250)
.+.|+||+|+|||+|+|+. +|.+ ||+|+++|+.+.+ +.|++.++.++++.+.
T Consensus 87 g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~----~~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 87 GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK----MEDIMRLIERLVYGLF 141 (294)
T ss_dssp TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC----HHHHHHHHHHHHHHHH
T ss_pred CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC----HHHHHHHHHHHHHHHH
Confidence 3679999999999999764 6888 9999999999975 6788888888777764
No 489
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=98.91 E-value=9.9e-10 Score=130.84 Aligned_cols=127 Identities=17% Similarity=0.061 Sum_probs=102.7
Q ss_pred HHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeec-----c-------------------------ccCCcccc
Q psy17091 842 LMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFI-----D-------------------------ELNGDNLS 891 (1250)
Q Consensus 842 L~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~-----D-------------------------~~~g~~l~ 891 (1250)
+.++|+. .|.+|.....+.+.+ +++++.+.++||.+. | . +++.++
T Consensus 246 ~~~~G~~-EV~tP~L~~~el~~~---SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 320 (522)
T 2cja_A 246 LEPLGYR-EMIFPKLVTWEVWMK---SGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKI-AEPIGG 320 (522)
T ss_dssp HHHHTCE-ECBCCSEEEHHHHHH---HTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHB-CCCCEE
T ss_pred HHHcCCE-EEECCCcccHHHHhh---cCCcCccccceeeeecCCccchhhhhhhhhhhhcccccccccccccc-CCCcEE
Confidence 6678998 899999999888763 457788889999995 3 1 367899
Q ss_pred cCCCCcHHHHHHHHHcCCCC-CCCeeEEE-EeceeecCCCC--C--CCCCceEEeeEEEecCCCchhc--hHHH-HHHHH
Q psy17091 892 LRPEGTASVIRSVIENNLIY-DGPKRLWY-SGPMFRHERPQ--Y--GRYRQFYQIGVEAIGFPGPDID--AELI-IMCSR 962 (1250)
Q Consensus 892 LRpD~T~~iaR~~a~~~~~~-~~P~r~yy-~g~VfR~e~~~--~--gr~REf~Q~g~eiig~~~~~ad--aEvi-~l~~~ 962 (1250)
|||+.|++++++++....++ ++|+|+|+ +|++||+| ++ . +|.|||+|.++++||.++...+ .+++ ..+..
T Consensus 321 LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~ 399 (522)
T 2cja_A 321 MCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHI 399 (522)
T ss_dssp ECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred EccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHH
Confidence 99999999999988654444 68999999 99999999 66 4 5999999999999996644332 4567 77788
Q ss_pred HHHHCCCCceEEEe
Q psy17091 963 LWKNLNLKNICLEL 976 (1250)
Q Consensus 963 ~l~~lgl~~~~i~i 976 (1250)
+++.||++ .+.+
T Consensus 400 ~l~~LGLp--~v~~ 411 (522)
T 2cja_A 400 FNDILDIE--WRKA 411 (522)
T ss_dssp HHHTSCCC--EEEE
T ss_pred HHHHcCCC--EEee
Confidence 89999997 4454
No 490
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.88 E-value=6.4e-09 Score=118.19 Aligned_cols=127 Identities=15% Similarity=0.112 Sum_probs=86.6
Q ss_pred ceeeEEEEEEEcCeeEEEEecCCCCCCCcchhhHHHHHHHHHHHhhccCcEEEEEecCCC----------CCC-HHHHHH
Q psy17091 217 TRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQ----------NIS-AQDINI 285 (1250)
Q Consensus 217 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~e~~~~~~~~~~~~~ad~vllviD~~~----------~~~-~~d~~~ 285 (1250)
|.......+.+++..+.+|||+|+ +.+... ...+++.++++|+|+|.++ .-+ .....+
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQ----------e~~R~~-w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~ 216 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQ----------RSERKX-WVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAV 216 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSC----------HHHHHH-HHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHH
T ss_pred eeeeEEEEEEeeeeeeccccCCCc----------cccccc-HHHHhccCCEEEEEEECCccccccccccccchHHHHHHH
Confidence 444555667778889999999999 444433 3468899999999999982 111 122344
Q ss_pred HHHHHH----cCCcEEEEEeccccCCcc-----------------chHHHHHHHHHHh------ccC-------------
Q psy17091 286 ANFIYE----SGRSLIVCVNKWDSIIHN-----------------QRKIIKNNIKKKL------NFL------------- 325 (1250)
Q Consensus 286 ~~~~~~----~~~p~iiv~NK~Dl~~~~-----------------~~~~~~~~l~~~l------~~~------------- 325 (1250)
+..+.. .+.|+++++||+|+.++. ..++..+.+.+.+ ...
T Consensus 217 ~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~ 296 (340)
T 4fid_A 217 FKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEG 296 (340)
T ss_dssp HHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC-----------
T ss_pred HHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhcccccccccccc
Confidence 555544 468999999999986421 1333444444444 111
Q ss_pred ---CCCeEEEeecCCCCChHHHHHHHHHHHhh
Q psy17091 326 ---SFAMFNFISAIKLNNINSFMESINHVYDS 354 (1250)
Q Consensus 326 ---~~~~iv~iSA~~g~gv~~l~~~i~~~~~~ 354 (1250)
+...++++||++..+|+.+|+.+.+.+-.
T Consensus 297 ~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 297 AVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp ---CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 23678999999999999999999776543
No 491
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=98.87 E-value=5.5e-09 Score=123.37 Aligned_cols=148 Identities=16% Similarity=0.081 Sum_probs=110.1
Q ss_pred CCCCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeecccc-------CCccccc
Q psy17091 825 SNLICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDEL-------NGDNLSL 892 (1250)
Q Consensus 825 ~~~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~-------~g~~l~L 892 (1250)
..|..|....+ +-+.+.+.++||. .|.+|.....+.+-| .++++.+.++||++.|.. .++.++|
T Consensus 193 fy~l~p~GarL~raL~~f~~d~~~~~Gy~-EV~~P~lv~~el~~~---sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L 268 (522)
T 3vbb_A 193 GYFLKGVLVFLEQALIQYALRTLGSRGYI-PIYTPFFMRKEVMQE---VAQLSQFDEELYKVIGKGSEKSDDNSYDEKYL 268 (522)
T ss_dssp CCEEETHHHHHHHHHHHHHHHHHHHTTCE-EEECCSEEEHHHHHH---HSCCC-CCSCCCEEC------------CCEEE
T ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHcCCE-EEECCcccchHHHhh---cCCcccCcccceEeecCCccccccccCcceeE
Confidence 34445554443 3456667789999 899999988877653 334566788999998741 2578999
Q ss_pred CCCCcHHHHHHHHHcCCCC-CCCeeEEEEeceeecCCCCC-----C--CCCceEEeeEEEecCCCc-hhc---hHHHHHH
Q psy17091 893 RPEGTASVIRSVIENNLIY-DGPKRLWYSGPMFRHERPQY-----G--RYRQFYQIGVEAIGFPGP-DID---AELIIMC 960 (1250)
Q Consensus 893 RpD~T~~iaR~~a~~~~~~-~~P~r~yy~g~VfR~e~~~~-----g--r~REf~Q~g~eiig~~~~-~ad---aEvi~l~ 960 (1250)
+|..++|++.++.....++ ++|+|+|++++|||+|.+.. | |.|||+|.+..+|+.+.. .++ .+++.++
T Consensus 269 ~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 269 IATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp CSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHH
Confidence 9999999999888765555 88999999999999997532 2 899999999999998764 233 5778888
Q ss_pred HHHHHHCCCCceEEEeC
Q psy17091 961 SRLWKNLNLKNICLELN 977 (1250)
Q Consensus 961 ~~~l~~lgl~~~~i~i~ 977 (1250)
.++|+.||++ |.+..-
T Consensus 349 e~il~~LGLp-yrvv~l 364 (522)
T 3vbb_A 349 EEFYQSLGIP-YHIVNI 364 (522)
T ss_dssp HHHHHHTTCC-EEEEEC
T ss_pred HHHHHHcCCc-eEEEEc
Confidence 9999999994 655443
No 492
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.86 E-value=1.7e-08 Score=117.97 Aligned_cols=166 Identities=18% Similarity=0.211 Sum_probs=105.4
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcc----eeccCCCCcceeeEEEEEEEcC-eeEEEEecCCCCCCCcchhhHHHHHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENR----VITYDTPGTTRDSIKSLFEYNN-KKYILIDTAGIRRRNKTFEVIEKFSV 255 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~----~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~e~~~~ 255 (1250)
....++|+|++|||||||+|.|+|... .+......+|+... .+.... ..++++|+||+.... ..++++..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~ 142 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTN---FPPDTYLE 142 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSS---CCHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchH---HHHHHHHH
Confidence 356899999999999999999998432 22111222333221 112122 368999999985321 12233321
Q ss_pred HHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCCcEEEEEeccccC---------CccchHHHHHHHHHHh----
Q psy17091 256 IKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWDSI---------IHNQRKIIKNNIKKKL---- 322 (1250)
Q Consensus 256 ~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~p~iiv~NK~Dl~---------~~~~~~~~~~~l~~~l---- 322 (1250)
. ..+...+..++ ++... ...++..++..+...++|+++|+||.|++ +.....++.+.+++..
T Consensus 143 ~---~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 143 K---MKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp H---TTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred H---cCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 12344455555 77764 56889999999999999999999999976 1122334444444432
Q ss_pred cc--CCCCeEEEeec--CCCCChHHHHHHHHHHHhhcc
Q psy17091 323 NF--LSFAMFNFISA--IKLNNINSFMESINHVYDSSI 356 (1250)
Q Consensus 323 ~~--~~~~~iv~iSA--~~g~gv~~l~~~i~~~~~~~~ 356 (1250)
.. .....+|.+|+ ..+.|+++|.+.+.+.+++..
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 11 23457899999 677789999999998876655
No 493
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.85 E-value=2.5e-09 Score=124.24 Aligned_cols=90 Identities=26% Similarity=0.256 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCcccccCCCcceeeeEEEEEECC-----------------EEEEEEecCCCCcchh
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGK-----------------KSFIIIDTGGFEPEVK 65 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~~v~~~~~~T~~~~~~~~~~~~-----------------~~~~liDTpG~~~~~~ 65 (1250)
.+|+|||+||||||||+|+|++...+.++++|++|+++..+.+.+.+ ..+.+|||||+.....
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s 100 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS 100 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCc
Confidence 48999999999999999999998876799999999999999998876 4789999999864321
Q ss_pred hHHHHHHHHHHHHHhhcCCEEEEEEeCCC
Q psy17091 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQ 94 (1250)
Q Consensus 66 ~~~~~~~~~~~~~~~~~ad~il~v~D~~~ 94 (1250)
. .+.+..++...++.+|.+++|+|+..
T Consensus 101 ~--~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 101 T--GVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp S--SSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 11233345667889999999999864
No 494
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.82 E-value=2.5e-09 Score=130.03 Aligned_cols=105 Identities=23% Similarity=0.353 Sum_probs=75.2
Q ss_pred eeeEEEEEeCCCChhhHHHHHHhCCcceeccCCCCcceeeEEEEEEE-------cCeeEEEEecCCCCCCCc--chhhHH
Q psy17091 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEY-------NNKKYILIDTAGIRRRNK--TFEVIE 251 (1250)
Q Consensus 181 ~~~~i~ivG~~nvGKSSLin~l~~~~~~~~~~~~gtT~~~~~~~~~~-------~~~~~~liDTpG~~~~~~--~~~~~e 251 (1250)
+.++|+|+|.||||||||+|+|+|....+ ++++||++...+.+.| .+..+.|+||||+.+..+ .....+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 36889999999999999999999987543 5677776665555444 467899999999987643 223333
Q ss_pred HHHHHHHHHhhccCcEEEEEecCCCCCCHHHHHHHHHHHHcCC
Q psy17091 252 KFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR 294 (1250)
Q Consensus 252 ~~~~~~~~~~~~~ad~vllviD~~~~~~~~d~~~~~~~~~~~~ 294 (1250)
.|+. ..+- ++ ++|+|++.++++++..++..+.+.++
T Consensus 115 ~fal----a~ll-ss--~lv~n~~~~i~~~dl~~l~~v~e~~~ 150 (592)
T 1f5n_A 115 IFAL----AVLL-SS--TFVYNSIGTINQQAMDQLYYVTELTH 150 (592)
T ss_dssp HHHH----HHHH-CS--EEEEEEESCSSHHHHHTTHHHHTHHH
T ss_pred HHHH----HHHh-cC--eEEEECCCCccHHHHHHHHHHHHHhh
Confidence 3322 2221 22 67888888999999999888776543
No 495
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.82 E-value=7e-09 Score=121.03 Aligned_cols=126 Identities=24% Similarity=0.290 Sum_probs=78.2
Q ss_pred CEEEEEeCCCCcHHHHHHHHHcCCCc---ccccCCCcceeeeEEEEEECC--EEEEEEecCCCCcchh-----hHHHHHH
Q psy17091 3 PVLVLVGRPNVGKSTLFNRLTNSRDA---LVANYPGLTRDRHYGEGYIGK--KSFIIIDTGGFEPEVK-----KGIMHEM 72 (1250)
Q Consensus 3 ~~I~lvG~~nvGKSSL~N~l~~~~~~---~v~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~-----~~~~~~~ 72 (1250)
++++|+|++|+|||||+|.|+|.... +....++.++.......+..+ ..++++||||+..... ..+...+
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 45999999999999999999987521 122234555543332222222 2789999999864311 1122223
Q ss_pred HHHHHHHhh-------------cCC---EEEEEEeCCCCCChhhHHHHHHHHhcCCCEEEEEeCCCCCCCccc
Q psy17091 73 TKQTKQAII-------------ESD---IIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSIS 129 (1250)
Q Consensus 73 ~~~~~~~~~-------------~ad---~il~v~D~~~~~~~~~~~~~~~l~~~~~p~ilv~NK~D~~~~~~~ 129 (1250)
..++..++. +++ +++|++|+..++...|.++.+.|. .+.|+|+|+||+|.....+.
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHH
Confidence 333322221 222 577888998889999988888887 68899999999998765544
No 496
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.81 E-value=8.4e-09 Score=123.60 Aligned_cols=152 Identities=20% Similarity=0.305 Sum_probs=95.6
Q ss_pred EEEEEeCCCCcHHHHHHHHH------cCCCcccccCC---Cc--------c---eeeeEE---------------EEEEC
Q psy17091 4 VLVLVGRPNVGKSTLFNRLT------NSRDALVANYP---GL--------T---RDRHYG---------------EGYIG 48 (1250)
Q Consensus 4 ~I~lvG~~nvGKSSL~N~l~------~~~~~~v~~~~---~~--------T---~~~~~~---------------~~~~~ 48 (1250)
.|+++|.+||||||++|+|+ |.+..+++..+ +. + .+.... ...+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~ 182 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHC
Confidence 79999999999999999999 66655554321 10 0 000000 00125
Q ss_pred CEEEEEEecCCCCcchhhHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCChhhHHHHHHHHhcCCCE-EEEEeCCCCCCCc
Q psy17091 49 KKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPI-VLVINKSENINSS 127 (1250)
Q Consensus 49 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~~~~~l~~~~~p~-ilv~NK~D~~~~~ 127 (1250)
+..+.||||||..... ..+..++... ..+ ..+|.+++|+|+..+.. .....+.+... .|+ .+|+||+|.....
T Consensus 183 ~~DvvIIDTpG~~~~~-~~l~~el~~~-~~~-i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQE-DSLFEEMLQV-ANA-IQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAKG 256 (504)
T ss_dssp TCCEEEEEECCCCTTC-HHHHHHHHHH-HHH-HCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCCC
T ss_pred CCcEEEEeCCCCcccc-hhHHHHHHHH-Hhh-hcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccch
Confidence 6789999999986432 2233333222 222 38999999999987643 33344444432 674 8999999987443
Q ss_pred cc-hhHH-hcC-----------------CCCcEecccccCCc-hhHHHHHHHHh
Q psy17091 128 IS-LDFY-ELG-----------------IGNPHIISALYGNG-IKNFLENILTI 161 (1250)
Q Consensus 128 ~~-~~~~-~~~-----------------~~~~~~iSA~~g~g-i~~L~~~i~~~ 161 (1250)
.. .+.. ..+ +.+.+++|+.+|.| +.+|++++.+.
T Consensus 257 g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 257 GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 32 2211 111 22345689999999 99999999765
No 497
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=98.81 E-value=1.1e-08 Score=121.30 Aligned_cols=143 Identities=15% Similarity=0.215 Sum_probs=110.2
Q ss_pred CCCCcHHHH-----HHHHHHHHhCCCeEEEeccCccchHHhhhhcCCcccccccc-ceeeeccccCCcccccCCCCcHHH
Q psy17091 827 LICSKNSRI-----KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKK-EMYSFIDELNGDNLSLRPEGTASV 900 (1250)
Q Consensus 827 ~~~p~~e~i-----~~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~-~~~~~~D~~~g~~l~LRpD~T~~i 900 (1250)
|-.|....+ +-+.+.+.++|+. .|.+|.....+.+-| .+++..+.+ +||++.|. +++.++|+|..++++
T Consensus 213 ~l~p~GarL~~aL~~~~~d~~~~~Gy~-eV~~P~lv~~~l~~~---sG~~~~f~e~emf~v~~~-~~~~l~L~PTaE~~~ 287 (501)
T 1wle_A 213 YLRGAGALLQHGLVNFTLNKLIHRGFT-PMTVPDLLRGVVFEG---CGMTPNAKPSQIYNIDPS-RFEDLNLAGTAEVGL 287 (501)
T ss_dssp EEETHHHHHHHHHHHHHHHHHHHTTCE-EEECCSEECHHHHHH---HTCCSSSSSCSSCBBCTT-TSSSCEECSSHHHHH
T ss_pred EEcChHHHHHHHHHHHHHHHHHHcCCE-EEeCCccccHHHHHh---hcCCCccCccccEEEecC-CCCeEEECCcCcHHH
Confidence 345554443 3355677789999 899999988887642 222334556 89999886 678999999999999
Q ss_pred HHHHHHcCCCC-CCCeeEEEEeceeecCCC----CCC--CCCceEEeeEEEecCCC-chh---chHHHHHHHHHHHHCCC
Q psy17091 901 IRSVIENNLIY-DGPKRLWYSGPMFRHERP----QYG--RYRQFYQIGVEAIGFPG-PDI---DAELIIMCSRLWKNLNL 969 (1250)
Q Consensus 901 aR~~a~~~~~~-~~P~r~yy~g~VfR~e~~----~~g--r~REf~Q~g~eiig~~~-~~a---daEvi~l~~~~l~~lgl 969 (1250)
+.++.....++ ++|+|+|+++++||+|.. ..| |.|||.|.+.++|+.+. ..+ -.+++..+.++|+.||+
T Consensus 288 ~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgL 367 (501)
T 1wle_A 288 AGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGL 367 (501)
T ss_dssp HHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999765555 789999999999999954 234 89999999999999885 333 34678888899999999
Q ss_pred CceEEE
Q psy17091 970 KNICLE 975 (1250)
Q Consensus 970 ~~~~i~ 975 (1250)
+ |.+.
T Consensus 368 p-yrvv 372 (501)
T 1wle_A 368 H-FRVL 372 (501)
T ss_dssp C-EEEE
T ss_pred c-EEEE
Confidence 4 6654
No 498
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=98.79 E-value=1.8e-08 Score=118.46 Aligned_cols=133 Identities=16% Similarity=0.117 Sum_probs=105.7
Q ss_pred HHHHHHHhCCCeEEEeccCccchHHhhhhcCCccccccccceeeeccccCCcccccCCCCcHHHHHHHHHcCCCC-CCCe
Q psy17091 837 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIY-DGPK 915 (1250)
Q Consensus 837 ~f~~iL~~~G~~~~ir~~~g~~i~~acgql~~~~~~~~~~~~~~~~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~-~~P~ 915 (1250)
-+.+.+.++||. .|.+|.....+.+-| .++++.+.++||++.|. ++.++|+|..++|++-++.....++ ++|+
T Consensus 217 f~~d~~~~~Gy~-eV~~P~lv~~~l~~~---sG~~~~f~e~mf~v~~~--~~~~~L~PTaE~~l~~l~~~~i~sy~dLPl 290 (484)
T 3lss_A 217 YSLDFLVKRGYT-PFYPPFFLNRDVMGE---VAQLSQFDEELYQVSGD--GDKKYLIATSEMPIAAYHRGRWFTELKEPL 290 (484)
T ss_dssp HHHHHHHTTTCE-EEECCSEEEHHHHHH---HSCHHHHHHTCCEEESS--SSCEEECSSTHHHHHHHTTTCEESCCSSCE
T ss_pred HHHHHHHHcCCE-EEecCccccHHHHHh---cCCcccccccceEeecC--CcceEEeccCcHHHHHHHhccccchhhCCe
Confidence 355667789999 899998887777643 23466778899999774 6789999999999999888755555 8899
Q ss_pred eEEEEeceeecCCCC-----CC--CCCceEEeeEEEecCCCc-hhc---hHHHHHHHHHHHHCCCCceEEEe
Q psy17091 916 RLWYSGPMFRHERPQ-----YG--RYRQFYQIGVEAIGFPGP-DID---AELIIMCSRLWKNLNLKNICLEL 976 (1250)
Q Consensus 916 r~yy~g~VfR~e~~~-----~g--r~REf~Q~g~eiig~~~~-~ad---aEvi~l~~~~l~~lgl~~~~i~i 976 (1250)
|+|+++++||+|... .| |.|||+|.++++|+.+.. .++ .+++..+.++|+.||+. |.+..
T Consensus 291 r~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLp-yrvv~ 361 (484)
T 3lss_A 291 KYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLP-YRVVN 361 (484)
T ss_dssp EEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCC-EEEEE
T ss_pred eEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCc-EEEEE
Confidence 999999999999632 23 999999999999998765 222 46777888999999994 66544
No 499
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.74 E-value=1.5e-09 Score=117.75 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=38.2
Q ss_pred CCCEEEEEeCCCCCCCc--cc---hhHH-hcC-CCCcEecccccCCchhHHHHHHHHhh
Q psy17091 111 GQPIVLVINKSENINSS--IS---LDFY-ELG-IGNPHIISALYGNGIKNFLENILTIE 162 (1250)
Q Consensus 111 ~~p~ilv~NK~D~~~~~--~~---~~~~-~~~-~~~~~~iSA~~g~gi~~L~~~i~~~l 162 (1250)
+.|.++|+||+|+.+.. .. .+.. ..+ ..+++++||++|.|++++++.+.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 67899999999986532 11 2222 222 23689999999999999999998755
No 500
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=98.69 E-value=2.6e-07 Score=110.82 Aligned_cols=203 Identities=11% Similarity=0.138 Sum_probs=137.0
Q ss_pred CCcccccccccCCCC-cc---cCCChhhhHHHHHHHHHHhhhhhhccccCCCCCCcceeeecccCccC-CCHHHHHHHHH
Q psy17091 625 GCAINCIFCSTGRQG-FV---RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL-LNYKSTIGALK 699 (1250)
Q Consensus 625 GC~~~C~fC~t~~~~-~~---r~l~~~ei~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ivfmg~GEpl-~n~~~v~~~~~ 699 (1250)
+|+.+|.||...... .. +.-..++|++|+....+.+. ...+..|.| |.|+|+ ++.+.+.+.++
T Consensus 61 fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~-----------~~~i~~i~f-gGGtpt~l~~~~l~~ll~ 128 (457)
T 1olt_A 61 FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFA-----------GRHVSQLHW-GGGTPTYLNKAQISRLMK 128 (457)
T ss_dssp EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGT-----------TCCEEEEEE-EESCGGGSCHHHHHHHHH
T ss_pred CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcC-----------CCceEEEEE-eCCCcccCCHHHHHHHHH
Confidence 599999999965432 11 12235667777765544332 124555555 559998 48888888888
Q ss_pred HhhcCCCCCCC-CceEEEEecC--chhHHHHhhhhCC-CeEEEEccCCChhhhhccCCCCCCCCHHHHHHHHHHHHhhCC
Q psy17091 700 LILSDHAYGLS-RRHVILSTSG--IIPMIDKLAQECP-VELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSP 775 (1250)
Q Consensus 700 ~~~~~~~~~~~-~~~itvsT~g--~~~~i~~~~~~~~-~~la~sl~~~~~~~r~~~~p~~~~~~~~~l~~~~~~~~~~~~ 775 (1250)
.+.+. |+++ ...++++|++ +.+..-+.+.+.+ ..+.+++.+.+++..+.+ ++.++.++++++++...+ .+
T Consensus 129 ~i~~~--~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i---~R~~~~~~~~~ai~~~r~-~G 202 (457)
T 1olt_A 129 LLREN--FQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLV---NREQDEEFIFALLNHARE-IG 202 (457)
T ss_dssp HHHHH--SCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHH---TCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHh--CCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHh---CCCCCHHHHHHHHHHHHH-cC
Confidence 88763 2221 3578999976 3344334444444 348889999999999998 688999999999986654 33
Q ss_pred CceEE-EEEEEeccC-CCCHHHHHHHHHHhhcCCCccc-eeEeeeccCCCCCCC--------CCCCcHHH----HHHHHH
Q psy17091 776 RHMIT-FEYCMLHGI-NDTDIHAIELISLMRKNKILTS-CKINLIPFNCFPNSN--------LICSKNSR----IKIFAK 840 (1250)
Q Consensus 776 ~~~v~-~e~~li~g~-nd~~~~~~~l~~~~~~~~~~~~-~~vnlip~n~~~~~~--------~~~p~~e~----i~~f~~ 840 (1250)
+. +..-||-|+ +++.++..+..+++.. +. .+|.+-+|.+.++.+ +..|+.+. ...+.+
T Consensus 203 ---~~~v~~dlI~GlPget~e~~~~tl~~~~~----l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~ 275 (457)
T 1olt_A 203 ---FTSTNIDLIYGLPKQTPESFAFTLKRVAE----LNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIA 275 (457)
T ss_dssp ---CCSCEEEEEESCTTCCHHHHHHHHHHHHH----HCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHH
T ss_pred ---CCcEEEEEEcCCCCCCHHHHHHHHHHHHh----cCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHH
Confidence 32 455566666 7889999999999988 53 588888888766642 23456443 344667
Q ss_pred HHHhCCCeEEEec
Q psy17091 841 ILMNSGIFVTIRK 853 (1250)
Q Consensus 841 iL~~~G~~~~ir~ 853 (1250)
.|.++|+. .+..
T Consensus 276 ~L~~~Gy~-~yei 287 (457)
T 1olt_A 276 FLTQSGYQ-FIGM 287 (457)
T ss_dssp HHHHTTCE-EEET
T ss_pred HHHHCCCe-EEEe
Confidence 78889987 3443
Done!