RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17091
(1250 letters)
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 191 bits (484), Expect = 2e-54
Identities = 138/269 (51%), Positives = 191/269 (71%), Gaps = 4/269 (1%)
Query: 867 SGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRH 926
GE TD+V+KEMY+F D NGD+L+LRPEGTA +R+ IE+ L+Y+ +RLWY GPMFRH
Sbjct: 53 IGEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRH 111
Query: 927 ERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLEL-NSIGNFNER 985
ERPQ GRYRQF+Q+G E G GPDIDAELI++ +R W+ L + NSIG+ R
Sbjct: 112 ERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEAR 171
Query: 986 KKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEKD 1045
Y L+ ++++HK+ ED K +Y N LRVLDSKN ++ +L +AP L DYL+++
Sbjct: 172 ANYRDALVAFLEQHKE--KLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEE 229
Query: 1046 SLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLI 1105
S +HF G+ K+L I+Y +N +LVRG+DYYNRTVFEW T+ LGSQ ++C GGRYD L+
Sbjct: 230 SREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLV 289
Query: 1106 KKFSNKFVPASGFAIGIERLIELIKKINI 1134
++ + PA GFA+G+ERL+ L++ +N
Sbjct: 290 EQLGGRATPAVGFAMGLERLVLLVQAVNP 318
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 180 bits (458), Expect = 5e-51
Identities = 105/274 (38%), Positives = 168/274 (61%), Gaps = 8/274 (2%)
Query: 867 SGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDG--PKRLWYSGPMF 924
G+ TD+V+KEMY+F D+ +++LRPEGTA+V+RS IE+ + + P +L+Y+GPMF
Sbjct: 53 VGDSTDVVQKEMYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMF 111
Query: 925 RHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNE 984
R+ER Q GRYRQF Q GVEAIG P +DAE++ M ++++ LK++ L +NS+G+
Sbjct: 112 RYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMAS 171
Query: 985 RKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEK 1044
RK+Y L+ + + FC D + L+ + +R+LD K +E + AP++ D+L +
Sbjct: 172 RKEYNEALVKHFEPVIHE--FCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNE 229
Query: 1045 DSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKL---GSQNSICGGGRY 1101
+S ++ ++ L+ I Y + LVRG+DYY T FE D G+ ++CGGGRY
Sbjct: 230 ESKAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRY 289
Query: 1102 DFLIKKFSNKFVPASGFAIGIERLIELIKKININ 1135
+ L++ GFA+ IERL+ +++ I
Sbjct: 290 NGLLELLDGPSETGIGFALSIERLLLALEEEGIE 323
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus
thermophilus [TaxId: 274]}
Length = 324
Score = 177 bits (449), Expect = 9e-50
Identities = 103/272 (37%), Positives = 168/272 (61%), Gaps = 6/272 (2%)
Query: 867 SGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENN-LIYDGPKRLWYSGPMFR 925
G TDIV+KEM++F D G +L+LRPEGTA+++R+ +E+ ++ P RLW +GPMFR
Sbjct: 53 VGAATDIVRKEMFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFR 111
Query: 926 HERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNER 985
ERPQ GRYRQF+Q+ EA+G P +DAE +++ K L L+ + ++L+S+G+ +R
Sbjct: 112 AERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDR 171
Query: 986 KKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREIL--INAPKLLDYLE 1043
+Y L + H+++ ED K L N +R+LDSK+ + +L + +LD+L
Sbjct: 172 ARYNAYLREVLSPHREA--LSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLG 229
Query: 1044 KDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDF 1103
+++ H +++ L ++ Y++ LVRG+DYY RT FE +++G+Q+++ GGGRYD
Sbjct: 230 EEARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDG 289
Query: 1104 LIKKFSNKFVPASGFAIGIERLIELIKKININ 1135
L + VP GFA G+ER+ ++
Sbjct: 290 LSELLGGPRVPGVGFAFGVERVALALEAEGFG 321
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 151 bits (381), Expect = 3e-41
Identities = 39/252 (15%), Positives = 90/252 (35%), Gaps = 19/252 (7%)
Query: 876 KEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFRHERPQYGRYR 935
F+D G+ S+R + T +V+ + D ++WY+ ++R+
Sbjct: 35 PAGNFFLDR-KGNLFSIREDFTKTVLNHRKRYSP--DSQIKVWYADFVYRYSGSDL---V 88
Query: 936 QFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCIDLINY 995
YQ+G+E + D E++ + + +E+ G + + K ++
Sbjct: 89 AEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEGPVIVEIGHTGVYEDLLKEIPKDLHE 148
Query: 996 IKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEK--DSLDHFYGI 1053
+ +I+ ++ + + + +I I +P+ L ++ +
Sbjct: 149 KVLNLIDTKNLAEIEFLSHMKKIDLSRVEKIIEDSIYRRSPEHLKTMDLPLSVREDLLSA 208
Query: 1054 QKILN--YNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGGGRYDFLIKKFSNK 1111
L + +S +I+ L R ++ Y +F + GG Y +K
Sbjct: 209 SSFLQEKFPTVSVEIDLTLARTIEEYCGLIFTIYDTSSS--RLVAAGGEYTVNGEK---- 262
Query: 1112 FVPASGFAIGIE 1123
G +I +E
Sbjct: 263 ---GVGGSIFLE 271
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory
subunit HisZ {Lactococcus lactis [TaxId: 1358]}
Length = 318
Score = 139 bits (351), Expect = 8e-37
Identities = 54/276 (19%), Positives = 110/276 (39%), Gaps = 11/276 (3%)
Query: 864 GQLSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPM 923
L +++M+ FI G +++LR + T ++R + R Y G +
Sbjct: 49 TALESNGKTFNQEKMFQFIKH-EGQSITLRYDFTLPLVRLYSQIKDST--SARYSYFGKI 105
Query: 924 FRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFN 983
FR E+ GR + YQIG+E G + E++ + ++ + L L E+ S F
Sbjct: 106 FRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGLNKTVFEIGSAKFFQ 165
Query: 984 ERKKYCIDLINYIKKHKDSKWFCEDIKH---SLYLNSLRVLDSKNLIIREILINAPKLLD 1040
+ + + K + + LR L + I E+ + +
Sbjct: 166 RLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFITNELSRLENLVTN 225
Query: 1041 YLEKDSLDHFYGIQKILNYNNISY--KINTKLVRGMDYYNRTVFEWTTDKLGSQNSICGG 1098
+ + F +++ ++ I+ +V MDYY +F+ + + I G
Sbjct: 226 TKDDVLISSFDQLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSS--AANQPILSG 283
Query: 1099 GRYDFLIKKFSNKFVPASGFAIGIERLIELIKKINI 1134
GRYD L+ F + A GF ++ +++ +++ +
Sbjct: 284 GRYDQLLSNFQEE-AFAIGFCCHMDTILKALERQEL 318
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 129 bits (325), Expect = 2e-33
Identities = 62/278 (22%), Positives = 116/278 (41%), Gaps = 11/278 (3%)
Query: 866 LSGEETDIVKKEMYSFIDELNGDNLSLRPEGTASVIRSVIENNLIYDGPKRLWYSGPMFR 925
+ + + ++ YSF+D+ G ++ + P R + ++R
Sbjct: 51 YRIKSGEELLQQTYSFVDK--GGREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWR 108
Query: 926 HERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNIC-LELNSIGNFNE 984
+E PQ GRYR+ YQ + G P+ DAE+I + S + L L++I + +NS E
Sbjct: 109 YEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRINSRKIMEE 168
Query: 985 RKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREILINAPKLLDYLEK 1044
+ ++ + + + + + L + + +D + +
Sbjct: 169 IIGGMTSSDPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMAR 228
Query: 1045 DSLDHFYGIQKI-------LNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQNSICG 1097
+ I ++ +Y + + + +VRG+ YY VFE D+ G +I G
Sbjct: 229 ITGKSSEEIARMAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAY-DRSGQFRAILG 287
Query: 1098 GGRYDFLIKKFSNKFVPASGFAIGIERLIELIKKININ 1135
GGRYD L S + VPA GF +G + L+K+ N+
Sbjct: 288 GGRYDNLASLMSGESVPAVGFGMGDAVISLLLKRENVQ 325
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 113 bits (284), Expect = 7e-30
Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF +I D + + +VGEI R+E+ G +I A + ++S+ E+ Y+ H+ +PFF LV
Sbjct: 3 RTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLV 62
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
F+ SGPV VLEG + + R ++G T P A GTIR DFA +ID+N++H
Sbjct: 63 RFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIH 115
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 113 bits (284), Expect = 1e-29
Identities = 44/113 (38%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF I D +++ +VGEI R+E+ G +++A + S+ +++ Y K+RPFF LV
Sbjct: 5 RTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLV 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
+M SGPV V EG + +K R+++G+T+P + GTIR DF + +NI+H
Sbjct: 65 KYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIH 117
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 112 bits (281), Expect = 7e-29
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 45/156 (28%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHK--------- 472
+T ++ DA+ + +V EI +R++K GLKI+A M K S ++E+FY +
Sbjct: 4 KTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQK 63
Query: 473 ------------------------NRPFFKNLVNFMISGPVFIQVLEGEDAIKKHRILIG 508
R +NLV +M SGP + VL+G A++ R L+G
Sbjct: 64 LLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVG 123
Query: 509 DTDPIKAAKGTIRADFAES----------IDKNIVH 534
T P A GTIR D++ + N+VH
Sbjct: 124 PTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVH 159
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 110 bits (276), Expect = 9e-29
Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT LI D +E+ ++GEI +R E+ GL I A ++ +S + Y+ H+ +PFF +L+
Sbjct: 3 RTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLL 62
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAK-GTIRADFAESIDKNIVH 534
F+ SGPV ++EG AI R L G TDP++AA GTIR DFA N+VH
Sbjct: 63 EFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVH 116
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 110 bits (276), Expect = 1e-28
Identities = 63/113 (55%), Positives = 86/113 (76%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT S+I D LEK ++G+I +R+E+ GLK +A ++ LS+ E FY++HK RPFFK+LV
Sbjct: 4 RTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLV 63
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
FMISGPV + VLEGE+A+ +R ++G T+P +AA+GTIR DFA SIDKN VH
Sbjct: 64 QFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVH 116
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 108 bits (270), Expect = 9e-28
Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D +++ +VGEI R+E+ G K++A + + S+ + + Y+ + RPF+ LV
Sbjct: 6 RTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLV 65
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
+M SGPV V +G D ++ R LIG T+P A GTIR DF + KN++H
Sbjct: 66 KYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIH 118
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 107 bits (267), Expect = 2e-27
Identities = 43/113 (38%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF ++ D +++ ++G+I R E GLK++ ++ + + Y+ H+++PFF LV
Sbjct: 4 RTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLV 63
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
+F+ SGPVF V EG DA ++ R L+G TD AA GTIR D+ + N++H
Sbjct: 64 SFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIH 116
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 106 bits (265), Expect = 3e-27
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT + D +++ +VG++ R+E+ G ++ M + ++ + + Y + +PF+ L+
Sbjct: 7 RTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALI 66
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
+M SGPV V EG + ++ R +IG TD +AA GTIR DF+ I +N++H
Sbjct: 67 RYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIH 119
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 106 bits (265), Expect = 3e-27
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF I D +++ ++ EI +R+E+ G K++ + +K ++ Y K RPFF L
Sbjct: 5 RTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLC 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
+F+ SGPV V EGE I R LIG TDP K+A GTIR D A + +NI+H
Sbjct: 65 DFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIH 117
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 106 bits (266), Expect = 3e-27
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
T+ ++ D +++ +VGEI +R+EK G K+I M + K E+ Y + FF NL+
Sbjct: 7 ETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLI 66
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
++ SGPV EG + R LIG TDP++A GTIR D A +NIVH
Sbjct: 67 EYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVH 119
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 104 bits (260), Expect = 2e-26
Identities = 45/113 (39%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
++F +I D +++ +VG I R+EK G K+IA M ++ +++ Y ++PFFKNLV
Sbjct: 3 KSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLV 62
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
++ GPV V EG D +K+ R LIG+T+P+ + GTIR DF + KN++H
Sbjct: 63 AYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIH 115
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 103 bits (257), Expect = 4e-26
Identities = 38/113 (33%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
+TF +I D +++ ++GE+ R+EK G + + + ++ EK Y ++ FF LV
Sbjct: 3 QTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLV 62
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
++++SGPV + EG++ + R +IG T+P + GTIR DFA I +N++H
Sbjct: 63 DYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIH 115
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 106 bits (266), Expect = 6e-26
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 69 MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENINSSI 128
M + ++ + + DI+ +VD R + ++ +I + L+ +P ++++NK++ ++++
Sbjct: 2 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKN--KPRIMLLNKADKADAAV 59
Query: 129 ---SLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKV 185
+ +E I+++ G G+ + I + K I+
Sbjct: 60 TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA----IRA 115
Query: 186 AIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
I+G PNVGKSTLIN L +N T D PG T + K+ L+DT GI
Sbjct: 116 LIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ---WVKVGKELELLDTPGILWPK 171
Score = 36.3 bits (83), Expect = 0.018
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
++G PNVGKSTL NRL A + PG+T + + K ++DT G
Sbjct: 117 IIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW---VKVGKELELLDTPGI 167
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 101 bits (252), Expect = 2e-25
Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF + D + + +VGEI RYEK G ++ +K+ E Y+ HK RPFF LV
Sbjct: 5 RTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLV 64
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
+F+ SGPV V EG+ + R++IG T+P+ +A G+IR DF + +NI+
Sbjct: 65 SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIA 117
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 96.3 bits (239), Expect = 1e-23
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RT +I DA+ + ++GEI +R+EK GLKI+ M + + EK Y H+ +PFFK L+
Sbjct: 4 RTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALI 63
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDK---NIVH 534
+++ PV + VLEG A++ R + G TDP AA GTIR DF + N++H
Sbjct: 64 DYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIH 119
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 95.5 bits (237), Expect = 2e-23
Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKLSKNDVEKFYSIHKNRPFFKNLV 481
RTF ++ D +++N+VGE+ R+E GLK+ A + +SK+ Y+ PFF LV
Sbjct: 3 RTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLV 62
Query: 482 NFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
SGPVF V EG +A R ++G T+P AA GTIR DF S +N +H
Sbjct: 63 GGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIH 115
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 93.6 bits (231), Expect = 2e-22
Identities = 65/175 (37%), Positives = 105/175 (60%), Gaps = 3/175 (1%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
IKVAIVG+PNVGKSTL N++L + R + PGTTRD + + +KY+ +DTAG+RR
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68
Query: 243 RNKTFEVIEKFS-VIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
+++ + + + SI +A+VV+++LDA Q I+ QD +A + GR+ +V N
Sbjct: 69 KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128
Query: 302 KWDSIIHNQ--RKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDS 354
KWD ++H + ++KL F+ ++ F SA K NI+ ++++N Y S
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 183
Score = 77.4 bits (189), Expect = 1e-16
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65
+VGRPNVGKSTLFN + N ALV+ PG TRD E +I + ++ +DT G + +
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 71
Query: 66 KGI---MHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE 122
+ +I ++D+++ ++D QG+ QD+ + + + G+ V+V NK +
Sbjct: 72 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD 131
Query: 123 NINSS----------ISLDFYELGIGNPHIISALYGNGIKNFLENILTI 161
+ Y + SA G I ++ +
Sbjct: 132 LVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 180
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 91.3 bits (226), Expect = 3e-22
Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 424 RTFSLI--DALEKNIVGEIYNRYEKIGLKIIAAYMKKL-SKNDVEKFYSIHKNRPFFKNL 480
RT LI DA E+++V EI R EK KI++ +N +E+ Y H + +F +
Sbjct: 2 RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDN 61
Query: 481 VNFMISGPVFIQVLEGEDAIKKHRILIGDTDPIKAAKGTIRADFAESIDKNIVH 534
+FM+SGP+ V EG DAI K R L G+ GTIR D A I +N++H
Sbjct: 62 CDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIH 111
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 92.0 bits (227), Expect = 5e-22
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ IVGKPNVGKSTL+N LL E+R I D PGTTRD I + ++DTAG+
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV-- 58
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
R++T +++E+ + +TL+ I +A++V+ +LDA + +D I I +++ K
Sbjct: 59 RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVIN--K 116
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D + + IKN + + + ISA+K + ESI
Sbjct: 117 VDVVEKINEEEIKNKLGTDRHMV------KISALKGEGLEKLEESI 156
Score = 92.0 bits (227), Expect = 5e-22
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V+VG+PNVGKSTL NRL N A+V + PG TRD E I F I+DT G E
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ ++T Q I ++DI++F++D L E+D+ I ++ +V+
Sbjct: 63 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK 122
Query: 125 NSSISLDFYELGIGNPHI-ISALYGNGIKNFLENIL 159
+ + +LG + ISAL G G++ E+I
Sbjct: 123 INEEEI-KNKLGTDRHMVKISALKGEGLEKLEESIY 157
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 90.4 bits (223), Expect = 7e-21
Identities = 30/212 (14%), Positives = 83/212 (39%), Gaps = 13/212 (6%)
Query: 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY-IGKKSFIIIDTGGFEP 62
++V+VG P GK+ + +LT + + ++ + K +
Sbjct: 4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGL 63
Query: 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE 122
+++K ++ + E + + D E+ +I NF ++G V +
Sbjct: 64 KIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 123
Query: 123 NINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEY 182
+ I+ + ++ +G+P ++ ++F+ I E + ++ +
Sbjct: 124 DPE-VIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYE---------NSYESLDEEQD 173
Query: 183 IKVAIVGKPNVGKSTLINSLLG--ENRVITYD 212
++ + +VG+S ++N + ++R++ Y
Sbjct: 174 RDLSYIKIMDVGQSYVVNRVADHIQSRIVYYL 205
Score = 37.3 bits (85), Expect = 0.006
Identities = 17/166 (10%), Positives = 37/166 (22%), Gaps = 10/166 (6%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ +VG P GK+ + L I T + ++ T
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG---------QYRRDMVKTYKSFEFF 55
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
+ + L L + N + N +
Sbjct: 56 LPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFG-EQNGYK 114
Query: 305 SIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINH 350
+ + I + + ++++ FM I
Sbjct: 115 TFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIEC 160
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 91.0 bits (225), Expect = 8e-20
Identities = 44/302 (14%), Positives = 88/302 (29%), Gaps = 35/302 (11%)
Query: 183 IKVAIVGKPNVGKSTLINSLLG----ENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
+ VA+ G+ GKS+ IN+L G E T + N + D
Sbjct: 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLP 115
Query: 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIV 298
GI F L+ + ++ + DI+IA I +
Sbjct: 116 GIGST--------NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF 167
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNF---------------LSFAMFNFISAIKLN--NI 341
K DS I N+ K+ ++ +S + +
Sbjct: 168 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 227
Query: 342 NSFMESINHVYDSSIIHLSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIV 401
M+ + H + S I+ K+ I + A P +
Sbjct: 228 PVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTF 287
Query: 402 IHGNRLKYIGNDYKRYLEKYFYRTFSLIDALEKNIVGEIYNRYEKIGLKIIAAYMKKLSK 461
+ + L+ + K Y F + + + + + +++ I + + K +
Sbjct: 288 LLDSDLETLKKSMKFY-----RTVFGVDETSLQRLARDWEIEVDQVEAMIKSPAVFKPTD 342
Query: 462 ND 463
+
Sbjct: 343 EE 344
Score = 68.3 bits (166), Expect = 2e-12
Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 11/124 (8%)
Query: 5 LVLVGRPNVGKSTLFNRLTN----SRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
+ + G GKS+ N L A +T +RH + + + + D G
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGI 117
Query: 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK 120
T K E D I I R + D I + + V K
Sbjct: 118 GST----NFPPDTYLEKMKFYEYDFFIIISATR--FKKNDIDIAKAISMMKKEFYFVRTK 171
Query: 121 SENI 124
++
Sbjct: 172 VDSD 175
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 86.2 bits (212), Expect = 9e-20
Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
V +VG PN GKS+L+ ++ + I T ++ + +++ L D GI
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINI-----ANFIYESGRSLIVC 299
+ + ++ L+ I V++ +LDA + A R +V
Sbjct: 64 SEGKGL----GLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119
Query: 300 VNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355
+NK D + K + + + ++ +SA+ + + E+++ + S+
Sbjct: 120 LNKVDLLEEEAVKALADALARE-----GLAVLPVSALTGAGLPALKEALHALVRST 170
Score = 71.2 bits (173), Expect = 1e-14
Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 10/163 (6%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVKK 66
LVG PN GKS+L +T + + ++ F + D G +
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65
Query: 67 GIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLIT--------NFLRKSGQPIVLVI 118
G + + + I + ++++++D ++ + + LR+ + +
Sbjct: 66 G--KGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123
Query: 119 NKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTI 161
+ E D +SAL G G+ E + +
Sbjct: 124 DLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHAL 166
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 85.2 bits (209), Expect = 2e-19
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65
+VGRPNVGKSTL N+L + ++ + TR R G G I +DT G E K
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68
Query: 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK----- 120
+ I M K +I + +++IF+V+G + + + ++ I+ V
Sbjct: 69 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQE 128
Query: 121 SENINSSISLDFYELGIGNPHIISALYGNGIKNFLENIL 159
++ + ++ + ISA G + +
Sbjct: 129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 167
Score = 76.7 bits (187), Expect = 2e-16
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+AIVG+PNVGKSTL+N LLG+ IT TTR I + + I +DT G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME- 66
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
I + SI + +VI +++ + D + N + E +I+ VNK D
Sbjct: 67 -EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP-DDEMVLNKLREGKAPVILAVNKVD 124
Query: 305 SIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
++ + +++ + ++F ISA N+++ +
Sbjct: 125 --NVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 166
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 77.9 bits (190), Expect = 4e-17
Identities = 58/157 (36%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65
++VGRPNVGKSTLFN+L + A+V + G+TRD K+F ++DT G +
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63
Query: 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENIN 125
I +M + T I E+D+++F+VDG++G+ ++D+ + +FLRKS +LV NK+EN+
Sbjct: 64 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 123
Query: 126 SS---ISLDFYELGIGNPHIISALYGNGIKNFLENIL 159
+ + Y LG G P +SA + + LE I+
Sbjct: 124 EFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETII 160
Score = 68.2 bits (165), Expect = 1e-13
Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
V IVG+PNVGKSTL N L+ + + I D G TRD ++ E+ K + L+DT +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT--CGVFD 60
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
++I + TL I EA++V+ ++D ++ I+ +D ++A+F+ +S I+ NK +
Sbjct: 61 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 120
Query: 305 SIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
++ + + +K +L L F +SA N+++ +E+I
Sbjct: 121 NL-----REFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETI 159
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 76.3 bits (186), Expect = 2e-16
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 23/176 (13%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEPE 63
+ GR NVGKSTL RLT + PG+TR E K G E
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGR-----------QGLVEQDKLITNFLRKSGQ 112
V++ I E+ + D+ + +VDG+ +G + D FLR+
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 113 PIVLVINKSENI-NSSISLDFYELGIGNPHI--------ISALYGNGIKNFLENIL 159
P ++ +NK + I N ++F P ISA +G+ I+ I
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 178
Score = 71.3 bits (173), Expect = 1e-14
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 13/176 (7%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ G+ NVGKSTLI L G+ +V PG TR I+ ++ + + +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGK-KVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDA-----------QQNISAQDINIANFIYESG 293
+ E I+ V + +V +L++D ++ D+ F+ E
Sbjct: 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121
Query: 294 RSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSF-AMFNFISAIKLNNINSFMESI 348
IV VNK D I + Q I K ++ +F ISA +NI I
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 177
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 75.0 bits (183), Expect = 7e-16
Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 10/169 (5%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
V +VG P+VGKSTL++ + I T ++ + + + +++ D G+
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
+ + L+ I V++ ++D + +D S
Sbjct: 64 HQGVGLGH----QFLRHIERTRVIVHVIDM-SGLEGRDPYDDYLTINQELSEYNLRLTER 118
Query: 305 SIIHNQRKIIKNNIKKKLNFLSFAMFN-----FISAIKLNNINSFMESI 348
I K+ + L + + ISA+ + + +
Sbjct: 119 PQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEV 167
Score = 75.0 bits (183), Expect = 7e-16
Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 18/182 (9%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEG-YIGKKSFIIIDTGGFEPEVK 65
LVG P+VGKSTL + +++++ +A+Y T + G +SF++ D G
Sbjct: 6 LVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 64
Query: 66 KGIMHEMTKQTKQAIIESDIIIFIV---------DGRQGLVEQDKLITNFLRKSGQPIVL 116
+G+ + Q + I + +I+ ++ L +L LR + +P ++
Sbjct: 65 QGV--GLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122
Query: 117 VINKSENINSSISLD--FYELGIGNPHI-ISALYGNGIKNFLENILTI--ELPYKKFFKK 171
V NK + ++ +L+ +L P ISA+ G++ L + P + +
Sbjct: 123 VANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPLYDE 182
Query: 172 KE 173
+E
Sbjct: 183 EE 184
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 70.6 bits (171), Expect = 2e-14
Identities = 27/173 (15%), Positives = 71/173 (41%), Gaps = 1/173 (0%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGI 240
I+VA G+ N GKS+ +N+L + + I + K+ + + G
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 74
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
+ + + ++ + L+ +++L+D + + D + + +S +++V +
Sbjct: 75 AEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134
Query: 301 NKWDSIIHNQRKIIKNNIKKKL-NFLSFAMFNFISAIKLNNINSFMESINHVY 352
K D + RK N +++ + F S++K ++ + ++ +
Sbjct: 135 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 187
Score = 55.9 bits (133), Expect = 3e-09
Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDT--GG 59
+ GR N GKS+ N LTN + + K + +
Sbjct: 16 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYA 75
Query: 60 FEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
PE K + + ++ ++D R L + D+ + + S +++++
Sbjct: 76 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLT 135
Query: 120 KSENINSSISLDFYE---------LGIGNPHIISALYGNGIKNFLENI 158
K++ + S G S+L G+ + +
Sbjct: 136 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 71.0 bits (173), Expect = 6e-14
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 4/149 (2%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+ + ++GK VGKS+ +NS++GE V + +IDT G+
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDA----QQNISAQDINIANFIYESGRSLIV 298
++ L ++ + + LDA + +F IV
Sbjct: 93 GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIV 152
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSF 327
+ + + K+ L
Sbjct: 153 ALTHAQFSPPDGLPYDEFFSKRSEALLQV 181
Score = 63.7 bits (154), Expect = 2e-11
Identities = 27/219 (12%), Positives = 64/219 (29%), Gaps = 18/219 (8%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG-FEPE 63
++++G+ VGKS+ N + R ++ + + IIDT G E
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 94
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDK-----LITNFLRKSGQPIVLVI 118
+ + K ++ + DK + +F + ++ +
Sbjct: 95 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVAL 154
Query: 119 NKSENI-NSSISLDFYELGIGN--PHIISALYGNGIKNFLENILTIELPYKKFFKKKEFT 175
++ + D + ++ + +I + + K +
Sbjct: 155 THAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKND-- 212
Query: 176 NIHSIEYIKVAIVGKPNVGK--STLINSLLGENRVITYD 212
KV G + T+ L ++ I D
Sbjct: 213 -----SDEKVLPNGIAWIPHLVQTITEVALNKSESIFVD 246
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 81
Score = 63.6 bits (155), Expect = 5e-13
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 359 LSTSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYIGNDYKRYL 418
+ +S I AL + R K+ + Q PP + N ++ + N K +L
Sbjct: 2 VPSSAINSALQKVLAFTNLPR----GLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFL 57
Query: 419 EKYFYR 424
K
Sbjct: 58 RKLIRD 63
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 65.2 bits (157), Expect = 9e-13
Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+KV I G+PN GKS+L+N+L G I D GTTRD ++ + +IDTAG+R
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ E I + ++ ++ A+ + + V NK
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D ++ ++ +SA ++ +
Sbjct: 122 ADITGE----------TLGMSEVNGHALIRLSARTGEGVDVLRNHL 157
Score = 65.2 bits (157), Expect = 1e-12
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 2/155 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V+ GRPN GKS+L N L A+V + G TRD +I IIDT G
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + ++ Q I ++D ++F+VDG I + +
Sbjct: 64 DE-VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKA 122
Query: 125 NSSI-SLDFYELGIGNPHIISALYGNGIKNFLENI 158
+ + +L E+ +SA G G+ ++
Sbjct: 123 DITGETLGMSEVNGHALIRLSARTGEGVDVLRNHL 157
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 65.2 bits (157), Expect = 2e-12
Identities = 30/193 (15%), Positives = 68/193 (35%), Gaps = 15/193 (7%)
Query: 176 NIHSIEYIK---------------VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDS 220
+ E + +A+ G+ NVGKS+ INSL+ + + +
Sbjct: 2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61
Query: 221 IKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISA 280
+ + ++ + G + +K+ + + + E V+ ++D + S
Sbjct: 62 LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121
Query: 281 QDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNN 340
D+ + F+ G +IV K D I + +++ LN S+
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKG 181
Query: 341 INSFMESINHVYD 353
+ +I + +
Sbjct: 182 KDEAWGAIKKMIN 194
Score = 53.2 bits (126), Expect = 3e-08
Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 10/169 (5%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTN-SRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG-F 60
P + L GR NVGKS+ N L N A ++ PG T+ ++ + G
Sbjct: 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83
Query: 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK 120
+ ++ M + E ++ IVD R D + FL+ G P++++ K
Sbjct: 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATK 143
Query: 121 SENINSS--------ISLDFYELGIGNPHIISALYGNGIKNFLENILTI 161
++ I + + S+ G I +
Sbjct: 144 ADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM 192
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 64.7 bits (156), Expect = 4e-12
Identities = 30/210 (14%), Positives = 70/210 (33%), Gaps = 13/210 (6%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ I G N GK++L+ L ++ P S +Y+ L+D G +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60
Query: 245 KTF--EVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ + +K L ++++ V L ++I E+G +++ NK
Sbjct: 61 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 120
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAM-----FNFISAIKLNNINSFMESINHVYDSSII 357
+ IK+ ++ ++ + + + + ++ +
Sbjct: 121 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFA 180
Query: 358 HLSTSRITRALISAIKNHPPCRKKLIRPKL 387
+L + S K ++ I KL
Sbjct: 181 NLEA-SVVAFEGSINKRKISQWREWIDEKL 209
Score = 57.7 bits (138), Expect = 8e-10
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 13/131 (9%)
Query: 2 KPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
+P +++ G N GK++L LT P + ++D G
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHV 57
Query: 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVE------QDKLITNFLRKSGQPIV 115
+ + + K + + ++ + L IT ++G I+
Sbjct: 58 K--LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115
Query: 116 LVINKSENINS 126
+ NKSE +
Sbjct: 116 IACNKSELFTA 126
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 63.2 bits (152), Expect = 6e-12
Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEP 62
+ +VG+PNVGKSTL N L + A ++ P TR R G G++ + +DT G
Sbjct: 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 65
Query: 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSG-----QPIVLV 117
+ + M ++ +A+ + + ++++VD R +D+L+ L+ +
Sbjct: 66 PMDA-LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNK 124
Query: 118 INKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENIL 159
++ ++ ++ L P ++SAL + ++L
Sbjct: 125 LDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLL 166
Score = 62.4 bits (150), Expect = 1e-11
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 6/164 (3%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
VAIVGKPNVGKSTL+N+LLG P TTR ++ + ++ I +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ---IVFVDTPGLH 64
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
K + + +F + +++ + N V+ ++D + + +D +A +
Sbjct: 65 KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLV 121
Query: 305 SIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ K + +K L A +SA+ + +
Sbjct: 122 GNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADL 165
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 99
Score = 60.4 bits (146), Expect = 1e-11
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 1141 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAA 1200
DIY+V G + + A L+E LR V + N+ +FK Q RA+ A A
Sbjct: 3 VVDIYLVASGADTQSAAMALAERLRDELPGV--KLMTNHGGGNFKKQFARADKWGARVAV 60
Query: 1201 IIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 1244
++GE+E+ N T ++KDLR+ +Q +++ + +
Sbjct: 61 VLGESEVANGTAVVKDLRSG------EQTAVAQDSVAAHLRTLL 98
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 60.0 bits (145), Expect = 1e-10
Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 33/177 (18%)
Query: 183 IKVAIVGKPNVGKSTLINSLL-------GENRVITYDTP---------GTTRDSIKSLFE 226
+ V +G + GK+TL +L V Y G T ++ +E
Sbjct: 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE 63
Query: 227 YNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIA 286
+ Y +D G + + + + IL++ A Q
Sbjct: 64 TAKRHYSHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSAADGPMPQTREHI 112
Query: 287 NFIYESG-RSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSF----AMFNFISAIK 337
+ G ++V +NK D + + +++ ++ LN F SA+
Sbjct: 113 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALL 169
Score = 48.8 bits (116), Expect = 9e-07
Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 28/158 (17%)
Query: 2 KPVL--VLVGRPNVGKSTLFNRLT-----NSRDALVANYP-----------GLTRDRHYG 43
KP + +G + GK+TL LT + + V +Y G+T + +
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHV 60
Query: 44 EGYIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLI 103
E K+ + +D G +K M Q D I +V G + Q +
Sbjct: 61 EYETAKRHYSHVDCPGHADYIK-----NMITGAAQM----DGAILVVSAADGPMPQTREH 111
Query: 104 TNFLRKSGQP-IVLVINKSENINSSISLDFYELGIGNP 140
R+ G P IV+ +NK + ++ LD E+ + +
Sbjct: 112 ILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDL 149
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 55.7 bits (134), Expect = 4e-10
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 1141 QCDIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAA 1200
D++IV +G +A+ A L +LR G+K + + K QMK+A+ A F
Sbjct: 4 NLDLFIVTMGDQADRYAVKLLNHLRHNGIKAD----KDYLQRKIKGQMKQADRLGAKFTI 59
Query: 1201 IIGENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYK 1242
+IG+ E+ NN + +K++ + +I YF K
Sbjct: 60 VIGDQELENNKIDVKNMTTG------ESETIELDALVEYFKK 95
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 59.5 bits (143), Expect = 7e-10
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 27/109 (24%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY-------------------- 46
+VG+PNVGKST F+ T +ANYP T + + G Y
Sbjct: 5 VVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63
Query: 47 ----IGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVD 91
+ ++D G P +G + + + + +I +VD
Sbjct: 64 YRNGLALIPVKMVDVAGLVPGAHEGR--GLGNKFLDDLRMASALIHVVD 110
Score = 42.6 bits (99), Expect = 2e-04
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRD 219
++ +VGKPNVGKST ++ V + P TT +
Sbjct: 2 EIGVVGKPNVGKSTFFSAATL-VDVEIANYPFTTIE 36
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 57.5 bits (138), Expect = 3e-09
Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 19/102 (18%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRD-----------------RHYGEGYIGK 49
+VG PNVGKST F +T S ANYP T D Y
Sbjct: 15 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVP 74
Query: 50 KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVD 91
+ D G G+ + + D I +V
Sbjct: 75 AFLTVFDIAGLTKGASTGV--GLGNAFLSHVRAVDAIYQVVR 114
Score = 45.2 bits (106), Expect = 2e-05
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRD 219
+K IVG PNVGKST ++ + P T D
Sbjct: 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID 47
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 97
Score = 51.9 bits (124), Expect = 8e-09
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 1143 DIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAII 1202
+YI VGK S LR G+ V + + +Q+K A+A A+FA I
Sbjct: 5 SVYICRVGKINSSIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIF 60
Query: 1203 GENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 1244
GE ++ + I+++ Q ++ + +
Sbjct: 61 GERDLERGVVTIRNMYTG------SQENVGLDSVVEHLISQA 96
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 96
Score = 51.5 bits (123), Expect = 1e-08
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 1143 DIYIVHVGKEAELKAFVLSENLRTLGLKVILNCVFNNIHESFKSQMKRANASNANFAAII 1202
D+Y++ + +EA +AF L+E LR L+ ++ A A FA +
Sbjct: 5 DLYLIPLTEEAVAEAFYLAEALRP-RLRAEYALA----PRKPAKGLEEALKRGAAFAGFL 59
Query: 1203 GENEIINNTLIIKDLRNKYEDPTLKQISISFKDAENYFYKKI 1244
GE+E+ + +K L +Q+ +S ++ Y + +
Sbjct: 60 GEDELRAGEVTLKRLATG------EQVRLSREEVPGYLLQAL 95
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 52.9 bits (126), Expect = 2e-08
Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 14/168 (8%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAGI 240
+K+ ++G VGKS L+ + E++ D + N KK L DTAG
Sbjct: 3 MKILLIGDSGVGKSCLLVRFV-EDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG- 60
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
E+F I T A +IL+ D + +I + +
Sbjct: 61 ---------QERFRTI-TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQL 110
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ + +++ + + L F SA +N+N ++
Sbjct: 111 LLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 158
Score = 40.5 bits (94), Expect = 4e-04
Identities = 31/163 (19%), Positives = 50/163 (30%), Gaps = 18/163 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
++L+G VGKS L R + + G+ + K I DT G E
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE-- 62
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVD----GRQGLVEQDKLITNFLRKSGQPIVLVIN 119
T + II + D ++Q N ++LV N
Sbjct: 63 -------RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 115
Query: 120 KSENINSSISLDFYELGIGNPHI----ISALYGNGIKNFLENI 158
KS+ ++ D E I SA + + +
Sbjct: 116 KSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 158
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 51.6 bits (122), Expect = 1e-07
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 13/164 (7%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
V VG + GK+ L LL T + + K N ++ R
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES-----GRSLIV 298
+ + + + V+ Q+ + + + +S SL++
Sbjct: 62 FQLLDRFKSSARAV--------VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLI 113
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN 342
NK D + K+I+ ++K+LN L S + ++
Sbjct: 114 ACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 157
Score = 48.1 bits (113), Expect = 2e-06
Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 3/122 (2%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEVK 65
+ VG + GK+ LF RL + +T + + + + + ++
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61
Query: 66 KGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNF-LRKSGQPIVLVINKSENI 124
++ + + D F + + +++ + K+ +++ NK +
Sbjct: 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121
Query: 125 NS 126
+
Sbjct: 122 MA 123
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 51.1 bits (122), Expect = 3e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 7 LVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI 47
+VG PNVGKSTLFN LT + ANYP T + + G +
Sbjct: 7 IVGLPNVGKSTLFNALTKA-GIEAANYPFCTIEPNTGVVPM 46
Score = 40.3 bits (94), Expect = 9e-04
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 183 IKVAIVGKPNVGKSTLINSL 202
K IVG PNVGKSTL N+L
Sbjct: 3 FKCGIVGLPNVGKSTLFNAL 22
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 50.1 bits (118), Expect = 4e-07
Identities = 28/196 (14%), Positives = 56/196 (28%), Gaps = 7/196 (3%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
V+++G + GK+TL++ + G T + + R
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 245 KTFE------VIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIV 298
+ + A++ IL++D + Q N + +V
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVV 127
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIH 358
NK D IH R + + + + + E +
Sbjct: 128 AANKID-RIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVT 186
Query: 359 LSTSRITRALISAIKN 374
S+++ ISAI
Sbjct: 187 DFASQVSIIPISAITG 202
Score = 43.1 bits (100), Expect = 8e-05
Identities = 42/213 (19%), Positives = 73/213 (34%), Gaps = 15/213 (7%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVAN--------YPGLTRDRHYGEGYIGKKSFII 54
P++ ++G + GK+TL + + S A + D G K F I
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSI 65
Query: 55 IDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPI 114
+T + T K+ +D+ I IVD +G Q + N LR P
Sbjct: 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPF 125
Query: 115 VLVINKSENINSSISL---DFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFFKK 171
V+ NK + I+ F E + + + + ++F +
Sbjct: 126 VVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRV 185
Query: 172 KEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLG 204
+F + SI + I G L+ L+G
Sbjct: 186 TDFASQVSI----IPISAITGEGIPELLTMLMG 214
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 47.9 bits (113), Expect = 9e-07
Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 21/171 (12%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK-KYILIDTAGIRR 242
K+ I+G +VGK++ + ++ + + +K+++ + + K + DTAG
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG--- 63
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQ-----QNISAQDINIANFIYESGRSLI 297
E++ I T A IL+ D + I + +++ + L+
Sbjct: 64 -------QERYRTI-TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 115
Query: 298 VCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
V + L F F SA N+ E +
Sbjct: 116 VGNKCDMEDERVVSSERGRQLADHLGF----EFFEASAKDNINVKQTFERL 162
Score = 42.9 bits (100), Expect = 4e-05
Identities = 22/165 (13%), Positives = 45/165 (27%), Gaps = 19/165 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
++++G +VGK++ R + + G+ + I DT G E
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE-- 65
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQD----KLITNFLRKSGQPIVLVIN 119
T + I + D ++LV N
Sbjct: 66 -------RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 118
Query: 120 KSENINSSISLDFYELGIGNPHII-----SALYGNGIKNFLENIL 159
K + + + + + SA +K E ++
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 49.9 bits (118), Expect = 1e-06
Identities = 36/229 (15%), Positives = 65/229 (28%), Gaps = 19/229 (8%)
Query: 910 IYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNL 969
+ G R++ P+FR E R+ + F + + + +
Sbjct: 96 MASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYV 155
Query: 970 KNICLELNSIGNFNERK-------KYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLD 1022
+ + I NF + + + + EDI + +
Sbjct: 156 REHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMM 215
Query: 1023 SKNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVF 1082
L P D+ I + RG++ +
Sbjct: 216 ENENAPLYFLYQYPSEAKPFYIMKYDNKPEI----------CRAFDLEYRGVEISSGGQR 265
Query: 1083 EWTTDKLGSQNSICGGGR--YDFLIKKFSNKFVPASGFAIGIERLIELI 1129
E D L Q G ++F +K F P GF +G ERLI+ +
Sbjct: 266 EHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQM 314
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 47.6 bits (112), Expect = 1e-06
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ ++G N GK+TL+ L E+ T G IKS+ K + +
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN---IKSVQSQGFKLNVWDIGGQRKI 73
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
R E ++ + + + + + S +++ NK
Sbjct: 74 RPYWRSYFENTDILIYVIDSADRKR-------FEETGQELTELLEEEKLSCVPVLIFANK 126
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D + I + SA+ + M +
Sbjct: 127 QDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172
Score = 41.9 bits (97), Expect = 1e-04
Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 26/168 (15%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
++L+G N GK+TL +L + + + G +G+
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF-------------KLNVW 65
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQD-----KLITNFLRKSGQPIVLVIN 119
G ++ + +DI+I+++D ++ + + S P+++ N
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125
Query: 120 KSENINS------SISLDFYELGIGNPHI--ISALYGNGIKNFLENIL 159
K + + + + L+ + + I SAL G G+++ + +
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 48.1 bits (114), Expect = 2e-06
Identities = 45/205 (21%), Positives = 65/205 (31%), Gaps = 55/205 (26%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDT--------------------------- 213
+I V ++G + GKST L+ + I T
Sbjct: 5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKA 64
Query: 214 ---PGTTRDSIKSLFEYNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVIL 270
G T D FE + +ID G R+ +I S A+ IL
Sbjct: 65 ERERGITIDIALWKFETPKYQVTVIDAPG--HRDFIKNMITGTSQ---------ADCAIL 113
Query: 271 LLDAQQ-------NISAQDINIANFIYESG-RSLIVCVNKWDSIIHNQ------RKIIKN 316
++ + Q A + G R LIV VNK DS+ ++ K N
Sbjct: 114 IIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSN 173
Query: 317 NIKKKLNFLSFAMFNFISAIKLNNI 341
IKK F IS +N+
Sbjct: 174 FIKKVGYNPKTVPFVPISGWNGDNM 198
Score = 31.1 bits (70), Expect = 0.75
Identities = 37/205 (18%), Positives = 62/205 (30%), Gaps = 61/205 (29%)
Query: 5 LVLVGRPNVGKSTLFNRLT------------------------NSRDALVANYPGLTRDR 40
+V++G + GKST L + + A V + R+R
Sbjct: 9 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER 68
Query: 41 HYGEG------YIGKKSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQ 94
K +ID G +K M T QA D I I+ G
Sbjct: 69 GITIDIALWKFETPKYQVTVIDAPGHRDFIK-----NMITGTSQA----DCAILIIAGGV 119
Query: 95 GLVE-------QDKLITNFLRKSG-QPIVLVINKSENINSS---------ISLDFYELGI 137
G E Q + G + +++ +NK +++ + +F +
Sbjct: 120 GEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVG 179
Query: 138 GNPH-----IISALYGNGIKNFLEN 157
NP IS G+ + N
Sbjct: 180 YNPKTVPFVPISGWNGDNMIEATTN 204
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 46.7 bits (110), Expect = 3e-06
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 15/169 (8%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAGI 240
K+ ++G VGK+ ++ E+ + D E + K+ L DTAG
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFS-EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG- 64
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
E+F I T A ++L+ D S +I E S V
Sbjct: 65 ---------QERFRTI-TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK 114
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAM-FNFISAIKLNNINSFMESI 348
+ K + + + L + + F SA N+ + ++
Sbjct: 115 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163
Score = 40.1 bits (93), Expect = 5e-04
Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 21/166 (12%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEP 62
L+L+G VGK+ + R + + D + K I DT G E
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE- 66
Query: 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDG----RQGLVEQDKLITNFLRKSGQPIVLVI 118
T + I+ + D + + +++
Sbjct: 67 --------RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 118
Query: 119 NKSENINSSIS----LDFYELGIGNPHI-ISALYGNGIKNFLENIL 159
NK + + + L G + SA ++N +
Sbjct: 119 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 46.2 bits (108), Expect = 4e-06
Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ ++G N GK+T++ GE+ DT T E+ K + D G +
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGED----VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 58
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ + + V Q+ + ++ +G +L++ NK
Sbjct: 59 LRSYWRNYFESTDGLI------WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANK 112
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D I+ ++ SA+ ++ ++ +
Sbjct: 113 QDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 158
Score = 39.7 bits (91), Expect = 7e-04
Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
L+++G N GK+T+ + + T + I D GG +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTI----SPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + +++S + D + + + R +G +++ NK +
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQD----CQRELQSLLVEERLAGATLLIFANKQDLP 116
Query: 125 NS------SISLDFYELGIGNPHI--ISALYGNGIKNFLENIL 159
+ +L+ + + I SA+ G + ++ +L
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 159
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 46.1 bits (108), Expect = 4e-06
Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 19/182 (10%)
Query: 167 KFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFE 226
+ F +E KV IVG N GK+T++ V T T G+ + I
Sbjct: 9 RLFNHQEH---------KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV---- 55
Query: 227 YNNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIA 286
NN ++++ D G ++ + + V + + +
Sbjct: 56 INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV------VVDSTDRERISVTREELYKML 109
Query: 287 NFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFME 346
L++ NK D I +K A+ + +E
Sbjct: 110 AHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 169
Query: 347 SI 348
+
Sbjct: 170 WM 171
Score = 34.6 bits (78), Expect = 0.040
Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 12/162 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++VG N GK+T+ + + + + T + E I F++ D GG E
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINNTRFLMWDIGGQES-- 71
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + T+ I+ D L LRK+G I +
Sbjct: 72 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131
Query: 125 NS----SISLDFYELGIGNPHII--SALYGNGIKNFLENILT 160
+ S L + HI AL G G+ LE +++
Sbjct: 132 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 173
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 45.5 bits (106), Expect = 7e-06
Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ I+G GK+T++ L V T T G + + G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE-----TVTYKNLKFQVWDLGGLT 60
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ + + + + + ++ + + L+V NK
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDR-----IGISKSELVAMLEEEELRKAILVVFANK 115
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D + N++ SA K ++ ME +
Sbjct: 116 QDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 161
Score = 42.0 bits (97), Expect = 1e-04
Identities = 26/161 (16%), Positives = 43/161 (26%), Gaps = 12/161 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
++++G GK+T+ RL + + K+
Sbjct: 8 ILILGLDGAGKTTILYRLQVGE------VVTTIPTIGFNVETVTYKNLKFQVWDLGGLTS 61
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ T I D G L LRK+ + E
Sbjct: 62 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 121
Query: 125 NSS----ISLDFYELGIGNPHI--ISALYGNGIKNFLENIL 159
+S SL L I SA G G+ +E ++
Sbjct: 122 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 44.8 bits (105), Expect = 1e-05
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL-FEYNNKKYILIDTAGIR 241
+K+ I+G+ VGKS+L+ + +K++ + N K + DTAG
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67
Query: 242 R 242
R
Sbjct: 68 R 68
Score = 42.5 bits (99), Expect = 8e-05
Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 19/165 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
++++G VGKS+L R T+ D +A G+ K I DT G E
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE-- 67
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVD-----GRQGLVEQDKLITNFLRKSGQPIVLVI 118
T + +I + D L + + ++ +LV
Sbjct: 68 -------RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120
Query: 119 NKSENINSSISLDFYEL---GIGNPHI-ISALYGNGIKNFLENIL 159
NK + N + + I SA +G++ E ++
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV 165
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 44.8 bits (105), Expect = 1e-05
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 13/168 (7%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAGI 240
K+ ++G VGK+ L+ + D + E N +K L DTAG
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFT-QGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 64
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
R F I + IL ++ + I + + ++ V
Sbjct: 65 ER----FRSITQSYYRSANALILTYDIT------CEESFRCLPEWLREIEQYASNKVITV 114
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ I +R+ + ++ + + SA + +N+ +
Sbjct: 115 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 162
Score = 36.3 bits (83), Expect = 0.009
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK--SFIIIDTGGFEP 62
+VL+G VGK+ L R T + D I + I DT G E
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE- 65
Query: 63 EVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE 122
+ + + ++ A+I + I R + + + VLV NK +
Sbjct: 66 --RFRSITQSYYRSANALILTYDITCEESFRC--LPEWLREIEQYASNKVITVLVGNKID 121
Query: 123 ----NINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENILT 160
S + + ++ SA + ++ ++
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 43.2 bits (101), Expect = 1e-04
Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 29/156 (18%)
Query: 185 VAIVGKPNVGKSTLINSLL-----------GENRVITYDTP------GTTRDSIKSLFEY 227
+ I + GK+T +L T D G T + + +
Sbjct: 9 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 68
Query: 228 NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIAN 287
+ + +ID G EV V + I++ D+ Q + Q +
Sbjct: 69 KDHRINIIDAPGHVDFTI--EVERSMRV---------LDGAIVVFDSSQGVEPQSETVWR 117
Query: 288 FIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLN 323
+ I NK D ++ ++++L
Sbjct: 118 QAEKYKVPRIAFANKMD-KTGADLWLVIRTMQERLG 152
Score = 35.8 bits (82), Expect = 0.025
Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 8/138 (5%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDAL--VANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
+ + GK+T R+ + + + E + I +
Sbjct: 10 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 69
Query: 64 VKKGIMHEM------TKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV 117
+ + + T + ++++ D I + D QG+ Q + + K P +
Sbjct: 70 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 129
Query: 118 INKSENINSSISLDFYEL 135
NK + + + L +
Sbjct: 130 ANKMDKTGADLWLVIRTM 147
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 10/166 (6%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ +VG GK+T++ L V T T G ++++ Y N + + D G +
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE----YKNISFTVWDVGGQDK 56
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ + + V + + + + L+V NK
Sbjct: 57 IRPLWRHYFQNTQGLIF------VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D I + + A + + ++ +
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156
Score = 37.7 bits (86), Expect = 0.003
Identities = 19/164 (11%), Positives = 44/164 (26%), Gaps = 16/164 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++VG GK+T+ +L + + K+ +
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGE------IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS--- 121
+ + + T+ I D + E+ + +++ NK
Sbjct: 57 IRPLWRHYFQNTQGLIFVVD--SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114
Query: 122 -----ENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILT 160
I + L A G+G+ L+ +
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 41.6 bits (96), Expect = 2e-04
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 6/168 (3%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN--NKKYILIDTAGI 240
+KV I+G VGK++L++ + + Y K + + DTAG
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
R + + +L +V + + + V +
Sbjct: 63 ERFQSLGVAFYRGADC----CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 118
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+++ + + + ++ L SA N+++ E I
Sbjct: 119 GNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 166
Score = 34.3 bits (77), Expect = 0.044
Identities = 24/164 (14%), Positives = 45/164 (27%), Gaps = 12/164 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR--DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEP 62
++++G VGK++L +R N + A + + + DT G E
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 64
Query: 63 EVKKGIMHEMTKQTKQAIIESDIII---FIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
+ + ++ D+ F N I+
Sbjct: 65 FQS--LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 120 KSENINSSISLDFY-----ELGIGNPHIISALYGNGIKNFLENI 158
+E +S LG + SA + E I
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 166
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 41.4 bits (96), Expect = 2e-04
Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 19/170 (11%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL-FEYNNKKYILIDTAGIRR 242
K ++G GKS L++ + + + K + K + DTAG
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG--- 63
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRS----LIV 298
E+F T A +L+ D + + S +I+
Sbjct: 64 -------QERFR-SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 115
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
C NK D + ++ + + N L F SA+ N+
Sbjct: 116 CGNKKDLDADREVTFLEASRFAQENELMFL---ETSALTGENVEEAFVQC 162
Score = 38.4 bits (88), Expect = 0.002
Identities = 21/164 (12%), Positives = 40/164 (24%), Gaps = 19/164 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
+++G GKS L ++ + + G+ I DT G E
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE-- 65
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQP----IVLVIN 119
T+ + + + D + I+L N
Sbjct: 66 -------RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 118
Query: 120 KSENINSSISLDFYELGIGNPHII-----SALYGNGIKNFLENI 158
K + + + SAL G ++
Sbjct: 119 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 162
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 41.0 bits (95), Expect = 2e-04
Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 14/168 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL--IDTAGIR 241
KV +VG VGK+ L+ + D + + + K L DTAG
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG-- 65
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVN 301
E+F + T +A+ ++LL D S +I V +
Sbjct: 66 --------QERFRSV-THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM 116
Query: 302 KWDSIIH-NQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ + +++K +KL F SA N++ +I
Sbjct: 117 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI 164
Score = 35.2 bits (80), Expect = 0.020
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR--DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
++LVG VGK+ L R + + G+ + K + DT G E
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 40.8 bits (94), Expect = 3e-04
Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 9/166 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+++ +VG GK+T +N + T +++ + + N + R
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
R+ S I + + + + N+ + G ++V NK
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEK-------IEASKNELHNLLDKPQLQGIPVLVLGNK 113
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D K + + IS + +NI+ ++ +
Sbjct: 114 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 159
Score = 35.0 bits (79), Expect = 0.021
Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 15/163 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
L LVG GK+T N + + + T + + G + + D GG
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQ---FNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 61
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ ++++ I + + + + + G P++++ NK +
Sbjct: 62 SMWERYCRGVSAIVYMVDAADQEKIEASKN----ELHNLLDKPQLQGIPVLVLGNKRDLP 117
Query: 125 NSSISLDFYEL-------GIGNPHI-ISALYGNGIKNFLENIL 159
+ + E IS + I L+ ++
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 40.8 bits (94), Expect = 3e-04
Identities = 20/165 (12%), Positives = 43/165 (26%), Gaps = 19/165 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
L+ +G N GK+TL + L N R L H + +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDR------LATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 65 KKGIMHEMTKQTKQAIIESD---------IIIFIVDGRQGLVEQDKLITNFLRKSGQPIV 115
+ + + + + D + + +D K P
Sbjct: 57 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116
Query: 116 LVINKSENINSSISLDFYELGIGNPHI----ISALYGNGIKNFLE 156
+ + + ++ + G + S + NG +
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161
Score = 39.7 bits (91), Expect = 6e-04
Identities = 19/168 (11%), Positives = 49/168 (29%), Gaps = 9/168 (5%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
K+ +G N GK+TL++ L + T N K+ D G +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQA 57
Query: 244 NKTFEVIEKFSVIKTLK---SILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
+ ++ + E + A+ ++ I + V
Sbjct: 58 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
++ + + + ++ +++ S + N + +
Sbjct: 118 SEAE--LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 163
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 40.6 bits (94), Expect = 4e-04
Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 14/175 (8%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL-FEYNNKKYILIDTAGIR 241
K+ ++G VGKS L+ + Y + IK++ + K + DTAG
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG-- 64
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGR--SLIVC 299
E+F I T ++ +I++ D S + + + +++
Sbjct: 65 --------QERFRTI-TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL 115
Query: 300 VNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDS 354
+ + ++R + + K+ + + N ++F+ + +S
Sbjct: 116 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 170
Score = 36.4 bits (83), Expect = 0.011
Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 15/163 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
L+L+G VGKS L R ++ + G+ E I DT G E
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE-- 66
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSEN 123
+ + + I II++ V ++ + R + ++ ++ ++
Sbjct: 67 -RFRTITSSYYRGSHGI----IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 121
Query: 124 INSSISLDFYELGIGNPHI-------ISALYGNGIKNFLENIL 159
+ Y++ SAL +++ +
Sbjct: 122 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 164
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 40.3 bits (93), Expect = 5e-04
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 163 LPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIK 222
+ K + KE ++ I+G GK+T++ L V T T G +++
Sbjct: 7 MFDKLWGSNKEL---------RILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL- 56
Query: 223 SLFEYNNKKYILIDTA 238
Y N K + D
Sbjct: 57 ---SYKNLKLNVWDLG 69
Score = 31.5 bits (70), Expect = 0.41
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTG 58
++++G GK+T+ RL G + + + D G
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNL----KLNVWDLG 69
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 39.5 bits (91), Expect = 0.001
Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 19/170 (11%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL-FEYNNKKYILIDTAGIRR 242
KV ++G VGKS L++ + + + +S+ + K + DTAG
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG--- 62
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISA----QDINIANFIYESGRSLIV 298
E++ I T A +L+ D ++++ + + +S +++
Sbjct: 63 -------QERYRRI-TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 114
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
NK D + + + + + F SA+ N+ ++I
Sbjct: 115 VGNKSD---LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 161
Score = 38.3 bits (88), Expect = 0.002
Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 15/164 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKK-SFIIIDTGGFEPE 63
+VL+G VGKS L +R T + L + GK I DT G E
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE-- 64
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ--PIVLVINKS 121
+T + ++++ + ++ + + I+LV NKS
Sbjct: 65 ----RYRRITSAYYR-GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 119
Query: 122 ENINSSISLD----FYELGIGNPHI-ISALYGNGIKNFLENILT 160
+ + + I SAL ++ +NILT
Sbjct: 120 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 163
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 39.2 bits (90), Expect = 0.001
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 9/160 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++VG VGKS L + D V +Y D + + + + I E
Sbjct: 7 VIMVGSGGVGKSALTLQFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE-- 122
I + + + I + + + I P +LV NKS+
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEM--ESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 123 --NINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENIL 159
S ++ SA + +++
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162
Score = 33.0 bits (74), Expect = 0.11
Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 19/170 (11%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
KV +VG VGKS L + + V Y+ K + + + ++DTAG
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDIN-----IANFIYESGRSLIV 298
+ + + + + S I + ++
Sbjct: 66 AAIRDNYFRS-----------GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 114
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
NK D Q + + + +++ SA N++ +
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYV---ETSAKTRANVDKVFFDL 161
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 40.1 bits (93), Expect = 0.001
Identities = 26/196 (13%), Positives = 62/196 (31%), Gaps = 23/196 (11%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRD------------SIKSLFEYNNKKY 232
++++ + GKSTL +SL+ +I+ G R +IKS +
Sbjct: 20 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 79
Query: 233 ILIDTAGIRRRNKTFEVIEKFSVIKTLKSILE--------ANVVILLLDAQQNISAQDIN 284
D I+++ + + ++++D + + Q
Sbjct: 80 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 139
Query: 285 IANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSF 344
+ +V +NK D + ++ K ++ + ++ +S +
Sbjct: 140 VLRQALGERIKPVVVINKVD-RALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDV 198
Query: 345 MESI--NHVYDSSIIH 358
V S +H
Sbjct: 199 QVYPARGTVAFGSGLH 214
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 39.5 bits (91), Expect = 0.001
Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 37/221 (16%)
Query: 166 KKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL- 224
+ ++ +++ E++ + +G + GKSTL ++L ++ T K
Sbjct: 8 QNEVDQELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAG 67
Query: 225 -----FEYNNKKYILIDTAGIRRRNKTFE-------------VIEKFSVIKTLKSILEAN 266
+ G K V + +A+
Sbjct: 68 KESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQAD 127
Query: 267 VVILLLDAQQNISAQDINIANFIYESG--------RSLIVCVNKWDSIIHNQRKIIKNNI 318
+ +L++ A++ E L+V +NK D +
Sbjct: 128 IGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKEC 187
Query: 319 KKKL----------NFLSFAMFNFISAIKLNNINSFMESIN 349
KL N + + +SA N+ ++S
Sbjct: 188 VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSV 228
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 39.2 bits (90), Expect = 0.001
Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 23/189 (12%)
Query: 183 IKVAIVGKPNVGKSTLINSLLG---------ENRVITYDTPGTTRDSIKSLFEYNNKKYI 233
+ + +VG + GK+TL+ ++ G R +T + + Y+
Sbjct: 9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYV 68
Query: 234 LIDTAGIRRRNKTFEVIEKFSVIKTLK------------SILEANVVILLLDAQQNISAQ 281
+ + + + + S I ++++ ++++ +
Sbjct: 69 TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 128
Query: 282 DINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI--SAIKLN 339
+ ++LI+ NK D + + IK+ I SA+
Sbjct: 129 REHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKI 188
Query: 340 NINSFMESI 348
NI+S +E I
Sbjct: 189 NIDSLIEGI 197
Score = 31.5 bits (70), Expect = 0.46
Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 34/195 (17%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGE---------------GYIGK 49
+ +VG + GK+TL +T + + G Y+ +
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
Query: 50 KSFIIIDTGGFEPEVKK------GIMHEMTKQTKQAIIESDIIIFIVDGRQ-GLVEQDKL 102
S + +++ + D I +V + Q +
Sbjct: 71 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 130
Query: 103 ITNFLRKSGQPIVLVINK---------SENINSSISLDFYELGIGNPHII--SALYGNGI 151
L G ++++ + + I N II SAL+ I
Sbjct: 131 HFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINI 190
Query: 152 KNFLENILT-IELPY 165
+ +E I I+ PY
Sbjct: 191 DSLIEGIEEYIKTPY 205
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 38.0 bits (87), Expect = 0.002
Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 8/159 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
LV+VG VGKS L +L + V Y D + + I ++ ++ E
Sbjct: 6 LVVVGAGGVGKSALTIQLIQ--NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + + + + I + + + + I P+VLV NK +
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNT--KSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 125 NSSISLDFYELG---IGNPHI-ISALYGNGIKNFLENIL 159
++ + G P+I SA G+++ ++
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Score = 35.7 bits (81), Expect = 0.013
Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 10/165 (6%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
K+ +VG VGKS L L+ + V YD + + + ++DTAG
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKW 303
+ + + I + ++I I +++ NK
Sbjct: 65 SAMRDQYMRT------GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 304 DSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D ++ + + SA + ++
Sbjct: 119 DLAARTVESRQAQDLARSYG----IPYIETSAKTRQGVEDAFYTL 159
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 38.0 bits (87), Expect = 0.002
Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 8/163 (4%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ + G VGKS+L R +Y T + Y + KS +
Sbjct: 5 VAVFGAGGVGKSSLVLRFVK--GTFRESYIP-TVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK---- 120
+ M ++ A I I + +++ PI+LV NK
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 121 SENINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENILTIE 162
S + + SA + +K + +L +E
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164
Score = 31.9 bits (71), Expect = 0.26
Identities = 19/166 (11%), Positives = 47/166 (28%), Gaps = 8/166 (4%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
+VA+ G VGKS+L+ + +Y + + + DT G +
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
+ + + ++ + +++ NK
Sbjct: 63 FPAMQRLSISKGHA-----FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 117
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D + + + + +F SA +N+ + +
Sbjct: 118 CDESPSREVQSSEAEALARTWKCAFM---ETSAKLNHNVKELFQEL 160
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 38.2 bits (87), Expect = 0.003
Identities = 23/170 (13%), Positives = 57/170 (33%), Gaps = 2/170 (1%)
Query: 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
+ I + I G + GK+TL L +D ++ + + ++
Sbjct: 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQ--KRGITIDIGFSAFKLENY 59
Query: 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIV 298
I + +V+ I A +V+ + + + + + I + +I
Sbjct: 60 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVIT 119
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ + + ++I +I + + L + ISA ++ I
Sbjct: 120 KSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLI 169
Score = 37.8 bits (86), Expect = 0.003
Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 14/167 (8%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
L + G + GK+TL LT + ++ R I V
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGI---TIDIGFSAFKLENYRITLV 64
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
++ + A D+ + +VD ++G Q L PI++VI KS+N
Sbjct: 65 DAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNA 124
Query: 125 NSSISLDFYEL---------GIGNPHI--ISALYGNGIKNFLENILT 160
+ + + N I ISA G G+ I+T
Sbjct: 125 GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIIT 171
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 37.8 bits (86), Expect = 0.004
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
+KV I+G VGK++L+N + + Y T G + + + + + DTAG
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 242 R 242
R
Sbjct: 63 R 63
Score = 33.1 bits (74), Expect = 0.12
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
++++G VGK++L N+ N +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKK 26
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 37.2 bits (85), Expect = 0.005
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 13/81 (16%)
Query: 165 YKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSL 224
K F KE ++ ++G GK+T++ L V T T G ++
Sbjct: 4 LSKIFGNKEM---------RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET---- 50
Query: 225 FEYNNKKYILIDTAGIRRRNK 245
Y N K+ + D G +
Sbjct: 51 VTYKNVKFNVWDVGGQDKIRP 71
Score = 32.6 bits (73), Expect = 0.17
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 16/160 (10%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
++++G GK+T+ +L + G + + F + D GG +
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV----KFNVWDVGGQDKIR 70
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ Q +++ I + RQ L I N I++ NK +
Sbjct: 71 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR----IINDREMRDAIILIFANKQDLP 126
Query: 125 NS------SISLDFYELGIGNPHII--SALYGNGIKNFLE 156
++ L + N ++ A G+G+ L
Sbjct: 127 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 166
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 37.0 bits (84), Expect = 0.005
Identities = 29/160 (18%), Positives = 47/160 (29%), Gaps = 6/160 (3%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+VL+G VGKSTL N D++ ++ + Y + I
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEV-LGEDTYERTLMVDGESATIILLDMWENK 64
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE-- 122
+ I + E + + PI+LV NKS+
Sbjct: 65 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124
Query: 123 --NINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENIL 159
S + I SA + +K E I+
Sbjct: 125 RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 164
Score = 36.3 bits (82), Expect = 0.010
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 182 YIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY 232
Y +V ++G+ VGKSTL N G + + D D+ + + +
Sbjct: 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESA 53
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 37.0 bits (84), Expect = 0.005
Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 9/168 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
LV+VG VGKS L + V++Y D + + + E
Sbjct: 9 LVVVGGGGVGKSALTIQFIQ--SYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 66
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSE-- 122
+ + + ++ I G + I + P+VLV NK++
Sbjct: 67 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQ--ILRVKDRDDFPVVLVGNKADLE 124
Query: 123 --NINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENILTIELPYKK 167
+ + SA + E ++ Y++
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 172
Score = 34.6 bits (78), Expect = 0.031
Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 9/166 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
K+ +VG VGKS L + V YD + + + ++DTAG
Sbjct: 7 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 66
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
E + I + + I +++ NK
Sbjct: 67 FGAMREQYMRAGH------GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 120
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D Q + + + +++ SA N++ E +
Sbjct: 121 ADLESQRQVPRSEASAFGASHHVAYF---EASAKLRLNVDEAFEQL 163
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 36.8 bits (84), Expect = 0.006
Identities = 28/166 (16%), Positives = 49/166 (29%), Gaps = 9/166 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
KV ++G VGKS L + + YD + + + ++DTAG +
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 243 RNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNK 302
++ K L L + Q+I I +I+ NK
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQ------QSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117
Query: 303 WDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
D + + + F SA ++ I
Sbjct: 118 VDLESEREVSSSEGRALAEEWGCPFM---ETSAKSKTMVDELFAEI 160
Score = 36.1 bits (82), Expect = 0.010
Identities = 26/168 (15%), Positives = 45/168 (26%), Gaps = 25/168 (14%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V++G VGKS L + + Y D + E + ++ E
Sbjct: 6 VVVLGSGGVGKSALTVQFVT--GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS--- 121
+ K + I+ + Q + I R P++LV NK
Sbjct: 64 FASMRDLYIKNGQGFIL--VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 122 ----------ENINSSISLDFYELGIGNPHIISALYGNGIKNFLENIL 159
+ F E SA + I+
Sbjct: 122 SEREVSSSEGRALAEEWGCPFME--------TSAKSKTMVDELFAEIV 161
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 37.0 bits (84), Expect = 0.006
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 168 FFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSI 221
KK K+ +G N GK+TL++ L + T T + +
Sbjct: 8 GLYKKT---------GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL 52
Score = 32.7 bits (73), Expect = 0.14
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGY 46
LV +G N GK+TL + L + R T + G
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 57
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 36.5 bits (83), Expect = 0.007
Identities = 17/170 (10%), Positives = 50/170 (29%), Gaps = 10/170 (5%)
Query: 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
SI +++ ++G GKS+LI+ L + T + K + + ++++
Sbjct: 2 SIPELRLGVLGDARSGKSSLIHRFL-TGSYQVLEK--TESEQYKKEMLVDGQTHLVLIRE 58
Query: 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIV 298
+ F + + + ++ G +L +
Sbjct: 59 EAGAPDAKFSGWADAVIFVFSLEDENSF-------QAVSRLHGQLSSLRGEGRGGLALAL 111
Query: 299 CVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ + R + + + + A N++ + +
Sbjct: 112 VGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV 161
Score = 30.0 bits (66), Expect = 1.4
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
L ++G GKS+L +R
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGS 29
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 37.1 bits (85), Expect = 0.011
Identities = 29/223 (13%), Positives = 69/223 (30%), Gaps = 23/223 (10%)
Query: 913 GPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNI 972
G R + FR E + R F Q+ +E D+ + + +++ +
Sbjct: 107 GLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVEL 166
Query: 973 CLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIREIL 1032
L + ++Y D + ++ W + +L+
Sbjct: 167 PLPFPRLSYEEAMERYGSDKPDLRREGFRFLWVVD----------FPLLEWDEEEEAWTY 216
Query: 1033 INAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFEWTTDKLGSQ 1092
++ P + E L + ++ ++ G++ ++
Sbjct: 217 MHHPFTSPHPEDLPLLEKDPGRVRALAYDL-------VLNGVEVGGGSIRIHDPRLQARV 269
Query: 1093 NSICGGGR------YDFLIKKFSNKFVPASGFAIGIERLIELI 1129
+ G G + F ++ P G A G++RL+ L+
Sbjct: 270 FRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALM 312
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 37.0 bits (85), Expect = 0.012
Identities = 36/226 (15%), Positives = 65/226 (28%), Gaps = 22/226 (9%)
Query: 909 LIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLN 968
L+ G R + FR E + R +F QI VE P + + + LW +
Sbjct: 95 LMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVK 154
Query: 969 LKNIC-----LELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDS 1023
++ + + K D + ED S
Sbjct: 155 GVDLGDFPVMTFAEAERRYGSDKPDLRDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTS 214
Query: 1024 KNLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFE 1083
+ L AP + ++ D ++ G + +
Sbjct: 215 PKDMTAAELKAAP---ENAVANAYDMVINGYEVGG--------------GSVRIHNGDMQ 257
Query: 1084 WTTDKLGSQNSICGGGRYDFLIKKFSNKFVPASGFAIGIERLIELI 1129
T + N ++ FL+ P +G A G++RL L+
Sbjct: 258 QTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLL 303
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 35.5 bits (80), Expect = 0.014
Identities = 11/97 (11%), Positives = 20/97 (20%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
MK +++ +G P GKST R + + G
Sbjct: 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIV 60
Query: 61 EPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLV 97
+ + + R
Sbjct: 61 TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWE 97
Score = 28.9 bits (63), Expect = 2.4
Identities = 13/61 (21%), Positives = 20/61 (32%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ +G P GKST + +N R SI + E + KY +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 245 K 245
Sbjct: 65 F 65
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 35.8 bits (82), Expect = 0.015
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 25/149 (16%)
Query: 5 LVLVGRPNVGKSTLFNRLT------NSRDALVANYP---------GLTRDRHYGEGYIGK 49
+ +G + GK+TL +T G+T + + E
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65
Query: 50 KSFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRK 109
+ + D G VK M T D I +V G + Q + R+
Sbjct: 66 RHYAHTDCPGHADYVK-----NMITGTAPL----DGCILVVAANDGPMPQTREHLLLARQ 116
Query: 110 -SGQPIVLVINKSENINSSISLDFYELGI 137
+ +V+ +NK++ + S ++ EL I
Sbjct: 117 IGVEHVVVYVNKADAVQDSEMVELVELEI 145
Score = 34.2 bits (78), Expect = 0.055
Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 32/176 (18%)
Query: 183 IKVAIVGKPNVGKSTLINSLL------GENRVITYDTP---------GTTRDSIKSLFEY 227
+ V +G + GK+TL ++ G + Y+ G T ++ +
Sbjct: 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST 63
Query: 228 NNKKYILIDTAGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIAN 287
+ Y D G K +I + + IL++ A Q
Sbjct: 64 AARHYAHTDCPGHADYVK--NMITGTAP---------LDGCILVVAANDGPMPQTREHLL 112
Query: 288 FIYE-SGRSLIVCVNKWDSIIHNQR-KIIKNNIKKKLNFLSF----AMFNFISAIK 337
+ ++V VNK D++ ++ ++++ I++ L + SA+
Sbjct: 113 LARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALC 168
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 35.6 bits (81), Expect = 0.015
Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 6/170 (3%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
IK+ +G VGK+T + +N+ D + YN + +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYT-DNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64
Query: 243 RNKTFEV--IEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCV 300
+ ++ E+F + T +A +L+ D S ++ ++
Sbjct: 65 HLQLWDTAGQERFRSLTTA-FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 123
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLS--FAMFNFISAIKLNNINSFMESI 348
+ + N ++ + SA N+ +E++
Sbjct: 124 IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 173
Score = 31.4 bits (70), Expect = 0.44
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
L+ +G VGK+T R T+++
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNK 29
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 35.4 bits (80), Expect = 0.016
Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 4/116 (3%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
LV+VG VGKS L + V +Y D + I + I+ E
Sbjct: 7 LVVVGDGGVGKSALTIQFFQ--KIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 64
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINK 120
+ + + +I + +LI + P++LV NK
Sbjct: 65 FSAMREQYMRTGDGFLIVYSVTDKASFEHV--DRFHQLILRVKDRESFPMILVANK 118
Score = 33.1 bits (74), Expect = 0.093
Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 13/172 (7%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
K+ +VG VGKS L + V YD + + ++DTAG
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKW 303
+ E + + + +++ I +I+ NK
Sbjct: 66 SAMREQYMRTG------DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 119
Query: 304 DSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN---SFMESINHVY 352
D + + + + + SA K +N +F + + +
Sbjct: 120 DLMHLRKVTRDQGKEMATKYNIPYI---ETSA-KDPPLNVDKTFHDLVRVIR 167
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 36.3 bits (83), Expect = 0.017
Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)
Query: 178 HSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDT 237
++ ++ +VG + GKS+++ +++G + + T R I L
Sbjct: 20 DPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQ 79
Query: 238 AGIRRRNKTFEVIEKFS-----VIKTLKSILEANVVILLLDAQQNISAQDINIANFIYES 292
+K ++ FS +I+ + N I I + + +
Sbjct: 80 EWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLP 139
Query: 293 GRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAM 329
G + + ++ I R+++ IKK+ +
Sbjct: 140 GITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVT 176
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 35.3 bits (80), Expect = 0.020
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
M P+L GK+TL +L
Sbjct: 1 MIPLLAFAAWSGTGKTTLLKKL 22
Score = 32.3 bits (72), Expect = 0.21
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 185 VAIVGKPNVGKSTLINSLLGE 205
+A GK+TL+ L+
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPA 25
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 35.6 bits (81), Expect = 0.022
Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 28/189 (14%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDT----------PGTTRDSIKSLF----- 225
E ++ G + GKSTLI LL ++++I D GTT D +
Sbjct: 8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGL 67
Query: 226 --EYNNKKYILIDTAGIRRRNKTFEVIE---KFSVIKTLKSILEAN-VVILLLDAQQNIS 279
E I + + F + + + + + + I+L+DA+ +
Sbjct: 68 QAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ 127
Query: 280 AQDINIANFIYESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF------- 332
Q + G IV + ++ ++ L F F
Sbjct: 128 TQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVP 187
Query: 333 ISAIKLNNI 341
+SA+K +N+
Sbjct: 188 MSALKGDNV 196
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 35.2 bits (80), Expect = 0.024
Identities = 17/163 (10%), Positives = 45/163 (27%), Gaps = 13/163 (7%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++G VGKS L + T+ + I + +
Sbjct: 6 YIIIGDTGVGKSCLLLQFTD--KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + ++++ + R+ + + + S +V+++ +++
Sbjct: 64 SFRSITRSYYRGAAGA----LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 119
Query: 125 NSSISLDFYELGIGNPHI-------ISALYGNGIKNFLENILT 160
S E G SA ++ N
Sbjct: 120 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 162
Score = 31.4 bits (70), Expect = 0.43
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTP 214
K I+G VGKS L+ + +D
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT 35
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 35.3 bits (80), Expect = 0.025
Identities = 26/184 (14%), Positives = 61/184 (33%), Gaps = 18/184 (9%)
Query: 183 IKVAIVGKPNVGKSTLINSLLG---ENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
+ + +VG + GK+TL +L G + T + T+
Sbjct: 6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSP 65
Query: 240 I----------RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFI 289
+ RR + +++ T+ + +L+ A + + +
Sbjct: 66 VCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM 125
Query: 290 Y---ESGRSLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFI--SAIKLNNINSF 344
+++I+ NK + + + IK+ + I SA+ NI+
Sbjct: 126 ALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVL 185
Query: 345 MESI 348
+++I
Sbjct: 186 VKAI 189
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 35.0 bits (79), Expect = 0.026
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGE 205
+K+ I G+P VGK+TL+ ++
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVER 23
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 34.7 bits (78), Expect = 0.031
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD 212
IK+ +VG VGKS++I Y
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYK 32
Score = 32.8 bits (73), Expect = 0.12
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
+V+VG VGKS++ R
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGI 26
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 34.6 bits (78), Expect = 0.036
Identities = 29/191 (15%), Positives = 56/191 (29%), Gaps = 24/191 (12%)
Query: 1 MKPV-LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGG 59
M+ + V+VG VGK+ L T + + Y D + IG + + +
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTT--NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 58
Query: 60 FEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
E + QT + + + E+ P +LV
Sbjct: 59 AGQEDYDRLRPLSYPQTDV--FLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGT 115
Query: 120 KSENINSSISLDFYELGIGNPHI------------------ISALYGNGIKNFLENILTI 161
+ + + +++ P SAL G+KN + +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 175
Query: 162 ELPYKKFFKKK 172
L + K +
Sbjct: 176 ALEPPEPKKSR 186
Score = 32.7 bits (73), Expect = 0.16
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYIL 234
IK +VG VGK+ L+ S Y T D+ + Y L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVP--TVFDNYAVTVMIGGEPYTL 53
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 35.2 bits (80), Expect = 0.039
Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 25/239 (10%)
Query: 913 GPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNI 972
G +R++ FR+E +F + + D+ + L + +
Sbjct: 90 GFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTK 149
Query: 973 CLELNSIGNFNE--RKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKNLIIRE 1030
+ +F + K + I + D S+ + K+ +
Sbjct: 150 VTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGR 209
Query: 1031 ILINAPKLLDYLEKDSLDHFYGIQ---KILNYNNISYKINTKLVRGMDYYNRTV------ 1081
I+ ++ D + + L I ++ +N ++ +++
Sbjct: 210 IVT---EIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGF 266
Query: 1082 -----FEWTTDKLGSQNSICGGG------RYDFLIKKFSNKFVPASGFAIGIERLIELI 1129
E ++ Q + G + + P +G IGI+R+I L
Sbjct: 267 SELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLF 325
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 33.9 bits (76), Expect = 0.053
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYI 233
KV ++G P VGKS L G + G T D + +
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMV 52
Score = 33.2 bits (74), Expect = 0.093
Identities = 23/156 (14%), Positives = 42/156 (26%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
++L+G P VGKS L D A G T DR +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
G M +D F + + T+ + + +S +
Sbjct: 64 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 123
Query: 125 NSSISLDFYELGIGNPHIISALYGNGIKNFLENILT 160
+ + SA + ++ E ++
Sbjct: 124 SVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 159
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 33.9 bits (76), Expect = 0.057
Identities = 21/168 (12%), Positives = 57/168 (33%), Gaps = 9/168 (5%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
LV+VG VGKS L + V +Y D + + I ++ + E
Sbjct: 8 LVVVGGGGVGKSALTIQFIQ--SYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ + + + ++ + + + + + I + P++L+ NK++
Sbjct: 66 FGAMREQYMRTGEGFLLVFSVTDRGS--FEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123
Query: 125 NSSISLDFYELG----IGNPHI-ISALYGNGIKNFLENILTIELPYKK 167
+ + ++ SA + ++ + +++
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQE 171
Score = 31.2 bits (69), Expect = 0.43
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 181 EYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPG 215
E ++ +VG VGKS L + V YD
Sbjct: 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI 38
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 33.7 bits (76), Expect = 0.057
Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 22/177 (12%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY--ILIDTAGI 240
K I+G VGKS L++ E + + + + E + +K + DTAG
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFT-EKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG- 62
Query: 241 RRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNIS----AQDINIANFIYESGRSL 296
E+F + T A +++ D + + + + A + +
Sbjct: 63 ---------QERFRAV-TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI 112
Query: 297 IVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN-SFMESINHVY 352
I+ NK D + + N L F SA N+ +F+E+ +Y
Sbjct: 113 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFL---EASAKTGENVEDAFLEAAKKIY 166
Score = 31.0 bits (69), Expect = 0.54
Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 19/165 (11%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+++G VGKS L ++ T + D + G I + + ++
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKK---------FMADCPHTIGVEFGTRIIEVSGQKIKLQI 57
Query: 65 KKGIMHEMTKQTKQAIIES---DIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS 121
E + ++ ++++ + R +T+ + V+++ +
Sbjct: 58 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 117
Query: 122 ENINSSISLDFYELG------IGNPHI-ISALYGNGIKNFLENIL 159
+ + YE G + SA G +++
Sbjct: 118 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 162
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 33.8 bits (76), Expect = 0.061
Identities = 15/56 (26%), Positives = 20/56 (35%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
IK +VG VGK+ L+ S Y S + + L DTA
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Score = 32.7 bits (73), Expect = 0.16
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 5/117 (4%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
V+VG VGK+ L T +A Y D + + K + E
Sbjct: 8 CVVVGDGAVGKTCLLISYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKS 121
+ QT ++I ++ V PI+LV K
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFEN---VRAKWYPEVRHHCPNTPIILVGTKL 119
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 33.5 bits (75), Expect = 0.070
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 10/119 (8%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPE 63
++++G NVGK+ L R R G+ + + + DT G E
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQ---PIVLVIN 119
K + H + ++ + I + P +LV N
Sbjct: 65 RKSMVQHYYRNVHA------VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 117
Score = 33.1 bits (74), Expect = 0.091
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
K+ ++G NVGK+ L + T G + K L DTAG
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62
Query: 242 RRNKTF 247
R K+
Sbjct: 63 RFRKSM 68
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 33.4 bits (75), Expect = 0.082
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYN-NKKYILIDTAGIRR 242
KV ++G+ VGK++L+ + T K L + DTAG R
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64
Score = 31.1 bits (69), Expect = 0.45
Identities = 22/164 (13%), Positives = 43/164 (26%), Gaps = 17/164 (10%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+VL+G VGK++L R ++ GK+ + I +
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 65 KKGIMHEMTKQ---------TKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIV 115
T + + + E I +
Sbjct: 66 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH 125
Query: 116 LVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENIL 159
+ I ++E+ S+ Y SA GI+ ++
Sbjct: 126 VSIQEAESYAESVGAKHYH--------TSAKQNKGIEELFLDLC 161
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 33.5 bits (75), Expect = 0.084
Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 16/174 (9%)
Query: 180 IEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTP-GTTRDSIKSLFEYNNKKYILIDTA 238
+ IK+ ++G+ VGKS+++ + + + G + + + K+ + DTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 239 GIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQ----DINIANFIYESGR 294
G E+F+ + A +++ D + S + +
Sbjct: 61 G----------QERFASL-APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI 109
Query: 295 SLIVCVNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESI 348
+ + NK D + + + +KL +F SA N+N I
Sbjct: 110 IIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163
Score = 31.2 bits (69), Expect = 0.53
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
LVL+G VGKS++ R ++
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSND 27
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 33.2 bits (74), Expect = 0.090
Identities = 15/159 (9%), Positives = 39/159 (24%), Gaps = 5/159 (3%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+ ++G +VGKS+L + V +Y + + + + + +
Sbjct: 7 IAILGYRSVGKSSLTIQFVE--GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSENI 124
+ I+ + ++ L + +V
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 125 NSSISLDFYELG--IGNPHI-ISALYGNGIKNFLENILT 160
+ L + SA + I+
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIIL 163
Score = 32.4 bits (72), Expect = 0.19
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD 212
K+AI+G +VGKS+L + V +YD
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYD 34
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 33.0 bits (74), Expect = 0.096
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
K+ +G+ +VGK++LI + ++ TY T G S E + L DTAG R
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Score = 31.1 bits (69), Expect = 0.51
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
LV +G +VGK++L R
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDS 24
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 33.1 bits (74), Expect = 0.10
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
+V+VG GK+ L + D NY + + I + +
Sbjct: 5 IVVVGDSQCGKTALLHVFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 65 KKGIMHEMTKQTKQAIIESDI 85
+ + +I DI
Sbjct: 63 YDNVRPLSYPDSDAVLICFDI 83
Score = 31.2 bits (69), Expect = 0.46
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKY 232
K+ +VG GK+ L++ + Y T ++ + FE + ++
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP--TVFENYTASFEIDTQRI 50
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 34.1 bits (77), Expect = 0.11
Identities = 21/141 (14%), Positives = 38/141 (26%), Gaps = 10/141 (7%)
Query: 178 HSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDT 237
+ I+V I G P VGKST I++L + D + IL D
Sbjct: 47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST----RTGGSILGDK 102
Query: 238 AGIRRRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQN------ISAQDINIANFIYE 291
+ R + S + A +L + + + +
Sbjct: 103 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA 162
Query: 292 SGRSLIVCVNKWDSIIHNQRK 312
+ + + Q
Sbjct: 163 DLTDFFLVLMLPGAGDELQGI 183
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 33.1 bits (74), Expect = 0.11
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAG 239
K+ IVG GK+ L+ + Y + + L DTAG
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 59
Score = 31.1 bits (69), Expect = 0.55
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
LV+VG GK+ L + +
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQ 26
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 32.7 bits (73), Expect = 0.12
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 179 SIEYIKVAIVGKPNVGKSTLINSLLGENRVITYD 212
++ +KV ++G VGKS+++ + ++ +
Sbjct: 1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNIN 34
Score = 31.5 bits (70), Expect = 0.34
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 1 MKPV-LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTG 58
++ + + L+G VGKS++ R D + G + + F+I DT
Sbjct: 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 61
Query: 59 GFE 61
G E
Sbjct: 62 GLE 64
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 32.7 bits (73), Expect = 0.13
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDT 213
+K+AI G+ VGKS L+ L + + YD
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDP 33
Score = 30.4 bits (67), Expect = 0.81
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
L + GR VGKS L R R
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKR 26
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 33.1 bits (75), Expect = 0.13
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 30/150 (20%)
Query: 102 LITNFL---RKSGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENI 158
+I FL K+ V+VINK + + EL + + +
Sbjct: 29 IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTS--------- 79
Query: 159 LTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLL-------GENRVITY 211
+ K+ S + G VGKS+L+N++ E
Sbjct: 80 --AKTGMGIEELKEYLKGKIST------MAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQ 131
Query: 212 DTPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
TT + F++ ++DT G
Sbjct: 132 RGRHTTTTAQLLKFDFGG---YVVDTPGFA 158
Score = 27.8 bits (61), Expect = 7.1
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALV-ANYPGLTRDRHYG 43
+ G VGKS+L N + V L R RH
Sbjct: 99 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT 137
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 32.6 bits (73), Expect = 0.15
Identities = 14/115 (12%), Positives = 33/115 (28%), Gaps = 2/115 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
++L+G VGKS+L NR + + F+ + +
Sbjct: 9 VILLGDGGVGKSSLMNRYVT--NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVIN 119
+ + + + + + + + + I K + VI
Sbjct: 67 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 121
Score = 31.8 bits (71), Expect = 0.33
Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 10/175 (5%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYD-TPGTTRDSIKSLFEYNNKKYILIDTAGIR 241
KV ++G VGKS+L+N + T G + + + + DTAG
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 242 RRNKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDI-NIANFIYESGRSLIVCV 300
R F + + +L +V + ++ A+ ++
Sbjct: 67 R----FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122
Query: 301 NKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNIN-SFMESINHVYDS 354
NK D ++R++ + + SA N+ +F E++ V +
Sbjct: 123 NKID---ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 174
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 33.3 bits (75), Expect = 0.16
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 178 HSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGT 216
++ ++A+VG + GKS+++ + +G + + T
Sbjct: 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 33.1 bits (75), Expect = 0.18
Identities = 19/141 (13%), Positives = 33/141 (23%), Gaps = 13/141 (9%)
Query: 881 FIDELNGDNLSLRPEGTASVIRSVIENNLIYDG---PKRLWYSGPMFRHERP------QY 931
F++ L + LR N L P L G F
Sbjct: 104 FLENLLKTSGKLRAT-LLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSV 162
Query: 932 GRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNERKKYCID 991
R + + + + RL +S +E +
Sbjct: 163 TRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQDELGRKGSK 222
Query: 992 L---INYIKKHKDSKWFCEDI 1009
L + K+ ++ W D
Sbjct: 223 LYYSFPWGKEPIETLWNLGDQ 243
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 33.2 bits (75), Expect = 0.18
Identities = 30/228 (13%), Positives = 74/228 (32%), Gaps = 10/228 (4%)
Query: 905 IENNLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLW 964
+ ++ +R++ P++R E R+ Y +GF + D + + L
Sbjct: 71 LYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDL--MRLEEALL 128
Query: 965 KNLNLKNICLELNSIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSK 1024
+ + + + I I + + + E++ + + + +
Sbjct: 129 AEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERL 188
Query: 1025 -NLIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVFE 1083
+E + + + + + S+ + L RG++ +
Sbjct: 189 LGEYAKERWGSDWLFVTRYPRSV--RPFYTYPEEDGTTRSFDL---LFRGLEITSGGQRI 243
Query: 1084 WTTDKLGSQNSICGGGR--YDFLIKKFSNKFVPASGFAIGIERLIELI 1129
++L G + ++ F P GFAIG ERL + +
Sbjct: 244 HRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKL 291
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon
Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 33.4 bits (76), Expect = 0.21
Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 22/107 (20%)
Query: 1112 FVPASGFAIGIERLIELIKKININH-------NFSHQC-------DIYIV--HVGKEAEL 1155
F + + K + ++H S D + +G E E
Sbjct: 10 LNKNFNFG-DVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEY 68
Query: 1156 KAFVLSENLRTLGLKVILNCVFN---NIHESFKSQMKRANASNANFA 1199
+ + E T+GL +I + V N +++ + +
Sbjct: 69 RRLI--ETAHTIGLGIIQDIVPNHMAVNSLNWRLMDVLKMGKKSKYY 113
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 32.9 bits (74), Expect = 0.23
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 178 HSIEYIKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRD 219
+ +++ + G P GKST + + D
Sbjct: 50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 91
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 32.1 bits (72), Expect = 0.24
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 4 VLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYI----GKKSFIIIDTGG 59
V+V VG P GKST S + N L + K +I +T
Sbjct: 16 VVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNP 75
Query: 60 FEPEVKK 66
P +
Sbjct: 76 DVPSRAR 82
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 31.5 bits (70), Expect = 0.34
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR-DALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFE 61
LVL+G VGKS+L R + + G F I DT G E
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Score = 30.0 bits (66), Expect = 1.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 184 KVAIVGKPNVGKSTLINSLL-GENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRR 242
K+ ++G+ VGKS+L+ + G+ T G + + K+ + DTAG R
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 31.5 bits (70), Expect = 0.36
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNK 230
+K +VG VGK+ L+ S + P S+ +
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYA-NDAFPEEYVPTVFDHYAVSVTVGGKQ 56
Score = 30.7 bits (68), Expect = 0.80
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
V+VG VGK+ L N
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDA 33
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 31.8 bits (72), Expect = 0.37
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRV----ITYDTPGTTRDSIKSL 224
+A G GKST+ + L + IT D S+++
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW 74
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 31.6 bits (71), Expect = 0.44
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 24/138 (17%)
Query: 110 SGQPIVLVINKSENINSSISLDFYELGIGNPHIISALYGNGIKNFLENILTIELPYKKFF 169
+ ++ I K + I + D + + E+ I
Sbjct: 40 NDIQPIICITKMDLIEDQDTEDTI------------------QAYAEDYRNIGYDVYLTS 81
Query: 170 KKKEFTNIHSIEYIK---VAIVGKPNVGKSTLINSLLGENRVITYDTP---GTTRDSIKS 223
K + + I + + G+ VGKS+L+N++ E + T + G + + +
Sbjct: 82 SKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRH 141
Query: 224 LFEYNNKKYILIDTAGIR 241
+ + ++ DT G
Sbjct: 142 VELIHTSGGLVADTPGFS 159
Score = 29.3 bits (65), Expect = 2.2
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 6 VLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF 60
V G+ VGKS+L N ++ + + + +I +GG
Sbjct: 101 VFAGQSGVGKSSLLNAISPELGLRT----NEISEHLGRGKHTTRHVELIHTSGGL 151
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 31.7 bits (72), Expect = 0.51
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 19/63 (30%)
Query: 147 YGNGIKNFLENI-LTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLINSLLGE 205
Y + L++I L+I +K E VA VG GKSTLIN +
Sbjct: 26 YNDNEAPILKDINLSI--------EKGET----------VAFVGMSGGGKSTLINLIPRF 67
Query: 206 NRV 208
V
Sbjct: 68 YDV 70
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 31.3 bits (70), Expect = 0.56
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDT 237
+ + ++G + GKSTL+ LL + I T ++ K L + + K L+D
Sbjct: 4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDR 58
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 31.4 bits (71), Expect = 0.60
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 184 KVAIVGKPNVGKSTLINSLLG----ENRVITYDTPGTTRDSIKSL 224
VA+VG+ GKST+ + + + I D ++ SL
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 31.7 bits (71), Expect = 0.61
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 1100 RYDFLIKKFSNKFVPASGFAIGIERLIELI 1129
FS P +G IG+ER++
Sbjct: 303 GLKDYCDGFSYGCPPHAGGGIGLERVVMFY 332
>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae
[TaxId: 666]}
Length = 264
Score = 31.4 bits (69), Expect = 0.64
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 382 LIRPKLRYAHQGGKNPPIIVIHG 404
L+ +L +A + P ++++HG
Sbjct: 2 LLSNQLHFAKPTARTPLVVLVHG 24
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 30.6 bits (68), Expect = 0.67
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 185 VAIVGKPNVGKSTLINSLLGE 205
+VG + GK+TL+ +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAA 24
Score = 28.7 bits (63), Expect = 2.9
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
M V +VG + GK+TL +
Sbjct: 1 MN-VWQVVGYKHSGKTTLMEKW 21
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 31.2 bits (70), Expect = 0.75
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRV 208
VAIVG GKS L+N L G+ +
Sbjct: 35 VAIVGLYRTGKSYLMNKLAGKKKG 58
Score = 29.3 bits (65), Expect = 2.7
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 2 KPVLVL--VGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSF------- 52
+P++V+ VG GKS L N+L + G T H ++
Sbjct: 30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSL---GSTVQSHTKGIWMWCVPHPKKPGHI 86
Query: 53 -IIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQG 95
+++DT G K ++ ++ S + +
Sbjct: 87 LVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQ 130
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 31.0 bits (70), Expect = 0.80
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 184 KVAIVGKPNVGKSTLINSLLGE 205
+AI G GK++L+ +LGE
Sbjct: 64 MLAITGSTGSGKTSLLMLILGE 85
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.4 bits (67), Expect = 0.95
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSR 26
LVLVG GK+T R
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGE 27
Score = 29.6 bits (65), Expect = 1.5
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYD 212
K+ +VG GK+T + L Y
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYV 33
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 30.0 bits (66), Expect = 1.1
Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 10/161 (6%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGFEPEV 64
LV++G VGKS L + V Y D + + + + ++ E
Sbjct: 6 LVVLGSGGVGKSALTVQFVQ--GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 65 KKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLV-----IN 119
+ K + + I L + + I P++LV +
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQ--STFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 120 KSENINSSISLDFYELGIGNPHI-ISALYGNGIKNFLENIL 159
+ + + SA + +++
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162
Score = 29.6 bits (65), Expect = 1.7
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITYDTP 214
K+ ++G VGKS L + V YD
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT 35
>d1rmva_ a.24.5.1 (A:) Ribgrass mosaic virus {Ribgrass mosaic virus
[TaxId: 51680]}
Length = 156
Score = 29.8 bits (67), Expect = 1.1
Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 1070 LVRGMDYYNRTVFE----WTT 1086
L G Y NR FE WTT
Sbjct: 132 LSNGHGYMNRAEFEAILPWTT 152
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 1 MKP-VLVLVGRPNVGKSTLFNRLTN---------SRDALVANYPGLTRDRHYGEGYIGKK 50
M +++L G + GKS + L + D+L+ P + G +
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADG 60
Query: 51 SFIIIDTGGFEPEVKKGIMHEMTKQTKQAIIESDIIIF 88
I + M + + II+ +
Sbjct: 61 GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGG 98
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 30.3 bits (68), Expect = 1.1
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRV 208
+ IVG+ GKSTL +
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIP 55
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 30.3 bits (67), Expect = 1.1
Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 16/170 (9%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEGYIGKKSFIIIDTGGF-EPE 63
++L+G P GK T +L + L R +G ++ +D G +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62
Query: 64 VKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFLRKSGQPIVLVINKSEN 123
+ ++ + A FI+DG VEQ K + L + G I V+
Sbjct: 63 LTNELVDDRLNNPDAA------NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLE---- 112
Query: 124 INSSISLDFYELGI-GNPHIISALYGNGIKNFLENILTIELPYKKFFKKK 172
+ L + + I N ++ P ++++ +
Sbjct: 113 ----FRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQ 158
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 110
Score = 29.2 bits (65), Expect = 1.2
Identities = 8/81 (9%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 1170 KVILNCVFNNIHESFKSQMKRANASNANFAAIIGENEIINNTLIIKDLRNKYEDPTLKQI 1229
+ + +E +++ + + G+ E+ + + ++ R K
Sbjct: 32 NAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGK------DLG 85
Query: 1230 SISFKDAENYFYKKIIKNINN 1250
S+ + +K+ + I +
Sbjct: 86 SMDVNE----VIEKLQQEIRS 102
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.3 bits (67), Expect = 1.2
Identities = 32/243 (13%), Positives = 61/243 (25%), Gaps = 53/243 (21%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENR------VITYD-----TPGTTRDSIKSLFEYNN-- 229
+ V VG GK+TL + D P ++
Sbjct: 1 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIM 60
Query: 230 -----------------KKYILIDTAGIRRRNKTFEVI--------EKFSVIKTLKSILE 264
+ I R K + + E F + ++E
Sbjct: 61 REGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLME 120
Query: 265 A---NVVILLLDAQQNISAQDINIANF-----IYESGRSLIVCVNKWDSIIHNQRKIIKN 316
+V+ + D + D F G + I +NK D + +++ +
Sbjct: 121 NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRK 180
Query: 317 NIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHLSTSRITR----ALISAI 372
+ + + + M S+ + L S TR L +
Sbjct: 181 YFE---DIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLA 237
Query: 373 KNH 375
H
Sbjct: 238 YEH 240
Score = 28.8 bits (63), Expect = 3.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 4 VLVLVGRPNVGKSTLFNRLTNSRDA 28
++V VG GK+TL +
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLED 26
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 30.3 bits (68), Expect = 1.5
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRV 208
A+VG GKST+ L +
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQP 66
>d1wdja_ c.52.1.27 (A:) Hypothetical protein TT1808 (TTHA1514)
{Thermus thermophilus [TaxId: 274]}
Length = 186
Score = 29.8 bits (66), Expect = 1.5
Identities = 8/131 (6%), Positives = 23/131 (17%), Gaps = 9/131 (6%)
Query: 926 HERPQYGR-YRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNLNLKNICLELNSIGNFNE 984
+ Y+ P + + N +
Sbjct: 16 RRLSELNPGYQWERSPEGRLWVSPTGGESGRRSLQLAYQLARWNEERGL-------GVVF 68
Query: 985 RKKYCIDLINYIKKHKDSKWFCEDIKHSLYL-NSLRVLDSKNLIIREILINAPKLLDYLE 1043
+ D+ + +L + E+ + +
Sbjct: 69 DSSTGFKFPDGSILSPDAAFVERGAWEALSEAEREGFPPLAPKAVFEVRSASQDPEELRA 128
Query: 1044 KDSLDHFYGIQ 1054
K + G+
Sbjct: 129 KMGIYLRNGVL 139
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 339
Score = 30.3 bits (67), Expect = 1.7
Identities = 13/126 (10%), Positives = 32/126 (25%), Gaps = 19/126 (15%)
Query: 1122 IERLIELIKKININH----------NFSHQCDIYIVHVGKEAELKAFVLSENLRTLGLKV 1171
++ + + +N F D V E + +
Sbjct: 41 AADKLKYVLNLGLNTVRLEGHIEPDEFFDIADDLGVLTMPGWECCDK----WEGQVNGEE 96
Query: 1172 ILNCVFNNIHESFKSQMKRANASNANFAAIIG---ENEIINNTLIIKDLRN--KYEDPTL 1226
+ + K+ M + ++I ++ + I + + K D L
Sbjct: 97 KGEPWVESDYPIAKASMFSEAERLRDHPSVISFHIGSDFAPDRRIEQGYLDAMKAADFLL 156
Query: 1227 KQISIS 1232
I +
Sbjct: 157 PVIPAA 162
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 29.7 bits (66), Expect = 2.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 1114 PASGFAIGIERLIELI 1129
P++G IG+ERL+ I
Sbjct: 256 PSAGAGIGVERLVRFI 271
>d1ei7a_ a.24.5.1 (A:) Tobacco mosaic virus coat protein {Tobacco
mosaic virus, vulgare strain [TaxId: 12242]}
Length = 158
Score = 28.7 bits (64), Expect = 2.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 6/23 (26%)
Query: 1070 LVRGMDYYNRTVFE------WTT 1086
L+RG YNR+ FE WT+
Sbjct: 132 LIRGTGSYNRSSFESSSGLVWTS 154
>d1cgme_ a.24.5.1 (E:) Cucumber green mottle mosaic virus {Cucumber
green mottle mosaic virus, strain watermelon [TaxId:
12235]}
Length = 160
Score = 28.7 bits (64), Expect = 3.2
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 6/23 (26%)
Query: 1070 LVRGMDYYNRTVFE------WTT 1086
+ +G D Y+R FE W+
Sbjct: 132 ISKGFDVYDRASFEAAFSVVWSE 154
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.7 bits (63), Expect = 3.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 183 IKVAIVGKPNVGKSTLINSL 202
+K+ ++G GKST + +
Sbjct: 3 VKILLLGAGESGKSTFLKQM 22
Score = 28.3 bits (62), Expect = 5.0
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 5 LVLVGRPNVGKSTLFNRLTNSRD 27
++L+G GKST ++
Sbjct: 5 ILLLGAGESGKSTFLKQMRIIHG 27
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 28.1 bits (61), Expect = 4.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
MK + ++ G VGKST RL
Sbjct: 1 MKKLYIITGPAGVGKSTTCKRL 22
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.4 bits (62), Expect = 4.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 5 LVLVGRPNVGKSTLFNRLTN 24
L+L+G GKST ++
Sbjct: 5 LLLLGTGESGKSTFIKQMRI 24
Score = 28.0 bits (61), Expect = 6.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGEN 206
+K+ ++G GKST I + +
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIH 26
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.9 bits (61), Expect = 5.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MKPVLVLVGRPNVGKSTLFNRL 22
M+ LVL+G VG+ + N L
Sbjct: 2 MRKTLVLLGAHGVGRRHIKNTL 23
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 28.2 bits (62), Expect = 5.6
Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 14/153 (9%)
Query: 184 KVAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRR 243
++ ++G GKST++ + T ++ F+ + + + D G R
Sbjct: 8 RLLLLGAGESGKSTIVKQM-------RILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDE 60
Query: 244 NKTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQ----DINIANFIYESGRSLIVC 299
+ + + +++ D Q N + +I N + S+I+
Sbjct: 61 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120
Query: 300 VNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNF 332
+NK D + K++ K + F FA +
Sbjct: 121 LNKQDLL---AEKVLAGKSKIEDYFPEFARYTT 150
Score = 27.8 bits (61), Expect = 8.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 5 LVLVGRPNVGKSTLFNRLTN 24
L+L+G GKST+ ++
Sbjct: 9 LLLLGAGESGKSTIVKQMRI 28
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 28.0 bits (61), Expect = 6.3
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 185 VAIVGKPNVGKSTLINSLLGEN-RVITYDTPGTTR 218
V + G GKSTL+ L E+ + + TTR
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTR 37
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 28.1 bits (62), Expect = 6.4
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 166 KKFFKKKEFTNIHSIEY-IK----VAIVGKPNVGKSTLINSLLG 204
K FKK + + ++ I+ I+G GK+T + + G
Sbjct: 10 SKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 28.0 bits (61), Expect = 7.0
Identities = 22/213 (10%), Positives = 56/213 (26%), Gaps = 12/213 (5%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ G+P GK++L +++ E + T F+ K Y + +
Sbjct: 35 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYS 94
Query: 245 KTFEVIEKFSVIKTLKSI-----LEANVVILLLDAQQNISAQDINIANFIYESGRSLIVC 299
+ ++ V + + + S +
Sbjct: 95 NRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGT 154
Query: 300 VNKWDSII----HNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSS 355
+ +++++ R K + L + ++I + +Y S
Sbjct: 155 IERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSL 214
Query: 356 IIHLSTSRITRALISAIKNHPPCRKKLIRPKLR 388
S + + N K++ R
Sbjct: 215 ETP---SISPKETLEKELNRKVSGKEIQPTLER 244
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 27.8 bits (62), Expect = 7.3
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 185 VAIVGKPNVGKSTLINSLLG 204
+ ++G GK+T + + G
Sbjct: 35 LVLLGPSGCGKTTTLRMIAG 54
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 27.9 bits (62), Expect = 7.3
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 21/91 (23%)
Query: 185 VAIVGKPNVGKSTLINSLLG--ENRVITYDTPGTTRDSIKSLFEYN---NKKYILIDTAG 239
+ G N GKS S + + VI++ S F + K ++D A
Sbjct: 56 LVFCGPANTGKSYFGMSFIHFIQGAVISFVN-------STSHFWLEPLTDTKVAMLDDAT 108
Query: 240 IRRRNKTFEVIEKFSVIKTLKSILEANVVIL 270
+ + + +++ L+ N + +
Sbjct: 109 ----TTCWTYFDTY-----MRNALDGNPISI 130
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 27.6 bits (60), Expect = 7.6
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 4/106 (3%)
Query: 3 PVLVLVGRPNVGKSTLFNRLTNSRDALVANYPGLTRDRHYGEG-YIGKKSFIIIDTGGFE 61
V+ ++G P GK T +L + + L R G G+ I G
Sbjct: 9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIV 68
Query: 62 PEVKKGIMHEMTKQTKQAIIESDIIIFIVDGRQGLVEQDKLITNFL 107
P+ I + + ++++ F++DG ++Q +
Sbjct: 69 PQE---ITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI 111
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 27.6 bits (61), Expect = 8.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 185 VAIVGKPNVGKSTLINSLLG 204
+ +VG GKSTL+ + G
Sbjct: 28 LHLVGPNGAGKSTLLARMAG 47
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 27.6 bits (61), Expect = 8.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 185 VAIVGKPNVGKSTLINSLLG 204
V G +GK+TL+ ++
Sbjct: 30 VNFHGPNGIGKTTLLKTIST 49
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 27.8 bits (61), Expect = 8.7
Identities = 23/177 (12%), Positives = 51/177 (28%), Gaps = 7/177 (3%)
Query: 908 NLIYDGPKRLWYSGPMFRHERPQYGRYRQFYQIGVEAIGFPGPDIDAELIIMCSRLWKNL 967
++ + + +W P R + V F P + S+
Sbjct: 59 HIFHTDNETVWNYVNKHAEMMPYVNRVKATVNGQV----FSLPINLHTINQFFSKTCSPD 114
Query: 968 NLKNICLELN--SIGNFNERKKYCIDLINYIKKHKDSKWFCEDIKHSLYLNSLRVLDSKN 1025
+ + E +I + ++ + I K + + + L K
Sbjct: 115 EARALIAEKGDSTIADPQTFEEEALRFIGKELYEAFFKGYTIKQWG-MQPSELPASILKR 173
Query: 1026 LIIREILINAPKLLDYLEKDSLDHFYGIQKILNYNNISYKINTKLVRGMDYYNRTVF 1082
L +R + + + I+ ILN+ NI + + + + VF
Sbjct: 174 LPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHENIKVDLQREFIVEERTHYDHVF 230
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 27.7 bits (61), Expect = 8.9
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTA 238
G + GK+TL +LL + L ++ ++ +
Sbjct: 157 WLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDV 210
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 27.2 bits (59), Expect = 8.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 183 IKVAIVGKPNVGKSTLINSLLGENRVITY 211
+K+ ++G GKST++ + + T
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTG 31
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of
SecA {Bacillus subtilis [TaxId: 1423]}
Length = 210
Score = 27.5 bits (60), Expect = 9.4
Identities = 15/124 (12%), Positives = 37/124 (29%), Gaps = 3/124 (2%)
Query: 300 VNKWDSIIHNQRKIIKNNIKKKLNFLSFAMFNFISAIKLNNINSFMESINHVYDSSIIHL 359
+ ++D ++ QR++I K++ + I + + + +
Sbjct: 26 LLQYDDVLRQQREVI---YKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEW 82
Query: 360 STSRITRALISAIKNHPPCRKKLIRPKLRYAHQGGKNPPIIVIHGNRLKYIGNDYKRYLE 419
+ + + + K I K II + + + G + R E
Sbjct: 83 KLDGLVDLINTTYLDEGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFE 142
Query: 420 KYFY 423
K
Sbjct: 143 KVIV 146
>d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed
(Calystegia sepium) [TaxId: 47519]}
Length = 151
Score = 26.8 bits (59), Expect = 9.6
Identities = 10/91 (10%), Positives = 29/91 (31%)
Query: 141 HIISALYGNGIKNFLENILTIELPYKKFFKKKEFTNIHSIEYIKVAIVGKPNVGKSTLIN 200
+ I+ + + + ++ +T+ E NI + EY+ + ++
Sbjct: 40 NPIALTFSSTKADGSKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLR 99
Query: 201 SLLGENRVITYDTPGTTRDSIKSLFEYNNKK 231
S+ + + G + S +
Sbjct: 100 SITFTTNLKAHGPYGQKVGTPFSSANVVGNE 130
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.5 bits (60), Expect = 9.8
Identities = 18/137 (13%), Positives = 35/137 (25%)
Query: 185 VAIVGKPNVGKSTLINSLLGENRVITYDTPGTTRDSIKSLFEYNNKKYILIDTAGIRRRN 244
+ GKS+LI +LL + + E + + Y ++ +
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64
Query: 245 KTFEVIEKFSVIKTLKSILEANVVILLLDAQQNISAQDINIANFIYESGRSLIVCVNKWD 304
+E V + +L D A I +
Sbjct: 65 SRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPP 124
Query: 305 SIIHNQRKIIKNNIKKK 321
S I R++ +
Sbjct: 125 SKIELDRRLRGRGQDSE 141
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.406
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,776,940
Number of extensions: 242930
Number of successful extensions: 1256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1190
Number of HSP's successfully gapped: 333
Length of query: 1250
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1154
Effective length of database: 1,089,516
Effective search space: 1257301464
Effective search space used: 1257301464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (27.0 bits)