BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17092
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KC2|A Chain A, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
pdb|3KC2|B Chain B, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
Length = 352
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 4 SPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQ 63
S FDIDGVL RGK+ + G D KL N R +P + +TN G + +
Sbjct: 11 SKKIAFAFDIDGVLFRGKKPIAGASDAL--KLLN---RNKIPYILLTNGGGFSERARTEF 65
Query: 64 LTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVV 116
++ L V+V Q++ SHTP K L +++ L G + +A+ GF VV
Sbjct: 66 ISSKLDVDVSPLQIIQSHTPYKSLVNKYSR-ILAVGTPSVRGVAEGYGFQDVV 117
>pdb|3RF6|A Chain A, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
pdb|3RF6|B Chain B, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
Length = 355
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 4 SPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQ 63
S F IDGVL RGK+ + G D KL N R +P + +TN G + +
Sbjct: 14 SKKIAFAFAIDGVLFRGKKPIAGASDAL--KLLN---RNKIPYILLTNGGGFSERARTEF 68
Query: 64 LTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVV 116
++ L V+V Q++ SHTP K L +++ L G + +A+ GF VV
Sbjct: 69 ISSKLDVDVSPLQIIQSHTPYKSLVNKYSR-ILAVGTPSVRGVAEGYGFQDVV 120
>pdb|1ZJJ|A Chain A, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
pdb|1ZJJ|B Chain B, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
Length = 263
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 17/122 (13%)
Query: 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWL 68
+IFD+DGVL RG + +PGV++ + L G +P F+TN ++L + +
Sbjct: 4 IIFDMDGVLYRGNRAIPGVRE-LIEFLKERG----IPFAFLTNNSTKTPEMYREKLLK-M 57
Query: 69 GVEVEEDQVVMSHTPIKMLHKYHTKHT------LISGQGPMEEIAKRLGFNKVVTVDSIR 122
G++V ++ S ++ Y +KH +I G+G ++E+ + LG+ +VT+D R
Sbjct: 58 GIDVSSSIIITSGLATRL---YMSKHLDPGKIFVIGGEGLVKEM-QALGWG-IVTLDEAR 112
Query: 123 NA 124
Sbjct: 113 QG 114
>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate
Phosphatase
pdb|2P27|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate
Phosphatase With Mg2+ At 1.9 A Resolution
pdb|2P69|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate
Phosphatase With Plp
Length = 306
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 1 EILSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
++L + G++FD DGVL G++ +PG + + +L +G +FV+N
Sbjct: 16 DVLGRAQGVLFDCDGVLWNGERAVPGAPE-LLERLARAG----KAALFVSN 61
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 1 EILSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
++L + G++FD DGVL G++ +PG + + +L +G +FV+N
Sbjct: 16 DVLGRAQGVLFDCDGVLWNGERAVPGAPE-LLERLARAG----KAALFVSN 61
>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
Length = 298
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 1 EILSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
++L + G++FD DGVL G++ +PG + + +L +G +FV+N
Sbjct: 16 DVLGRAQGVLFDCDGVLWNGERAVPGAPE-LLERLARAG----KAALFVSN 61
>pdb|2C4N|A Chain A, Nagd From E.Coli K-12 Strain
Length = 250
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWL 68
+I DIDGVL+ +PG + F++ + + G +P V +TN + D A +
Sbjct: 6 VICDIDGVLMHDNVAVPGAAE-FLHGIMDKG----LPLVLLTNYPSQTGQDLANRFAT-A 59
Query: 69 GVEVEEDQVVMSHTPIK-MLHKYHTKHTLISGQGPMEEIAKRLGF 112
GV+V + S L + K + G+G + + GF
Sbjct: 60 GVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGF 104
>pdb|4F9I|A Chain A, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
pdb|4F9I|B Chain B, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
Length = 1026
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 23 VLPGVQDTFMNKLTN-SGGRFVVPTVFVTNAGNSLAADKA-KQLTEWLGVEVEEDQVVMS 80
VL V D F+ +L + + V P+ N ++A DKA K + E+ + E V +
Sbjct: 823 VLDAVYDKFIERLVSMAKATKVGPSEDPANYMGAVADDKAMKSIKEYAEIGKREGHV-LY 881
Query: 81 HTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTV 118
+P+ Y T+I G P IA+ F V+ V
Sbjct: 882 ESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAV 919
>pdb|2J0A|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe
pdb|2J0B|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe In
Complex With Udp And Manganese
Length = 280
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 93 KHTLISGQGPMEEIAKRLGFNKVVTVDSIRNAHPLLDC 130
+ T I P E + +RLG + VVT S ++HP L C
Sbjct: 43 QQTFIFTDSPDERLQERLGPHLVVTQCSAEHSHPALSC 80
>pdb|1YDF|A Chain A, Crystal Structure Of A Had-like Phosphatase From
Streptococcus Pneumoniae
Length = 257
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
G + D+DG + +GK +P +TF+++L +P +FVTN
Sbjct: 5 GYLIDLDGTIYKGKDRIPA-GETFVHELQKRD----IPYLFVTN 43
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 69 GVEVEEDQVVMS-------HTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVDSI 121
G+ ++ +VV++ T + +LHK + +SG+ K LG N++++ D
Sbjct: 142 GIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEF 201
Query: 122 RNAHPL 127
+ PL
Sbjct: 202 AESRPL 207
>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh
pdb|1O8C|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|B Chain B, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|C Chain C, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|D Chain D, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
Length = 345
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 69 GVEVEEDQVVMS-------HTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVDSI 121
GV ++ ++V++ T + +LHK + +SG+ E K LG ++V+ D
Sbjct: 163 GVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEF 222
Query: 122 RNAHPL 127
+ PL
Sbjct: 223 AESRPL 228
>pdb|1YS9|A Chain A, Crystal Sructure Of Phosphatase Spy1043 From
Streptococcus Pyogenes
Length = 254
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 5 PSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
P G + D+DG + +GK +P + F+ +L G +P + VTN
Sbjct: 2 PYKGYLIDLDGTIYQGKNRIPA-GERFIKRLQERG----IPYLLVTN 43
>pdb|3EPR|A Chain A, Crystal Structure Of Putative Had Superfamily Hydrolase
From Streptococcus Agalactiae
Length = 264
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
G + D+DG + +GK +P + F+ +L G +P + VTN
Sbjct: 7 GYLIDLDGTIYKGKSRIPA-GERFIERLQEKG----IPYMLVTN 45
>pdb|1WVI|A Chain A, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|B Chain B, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|C Chain C, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|D Chain D, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
Length = 257
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
G + D+DG + +GK +P +D F+ +L +P + VTN
Sbjct: 5 GYLIDLDGTIYKGKDRIPAGED-FVKRLQERQ----LPYILVTN 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,100,388
Number of Sequences: 62578
Number of extensions: 185487
Number of successful extensions: 497
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 18
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)