BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17092
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91WM2|CECR5_MOUSE Cat eye syndrome critical region protein 5 homolog OS=Mus musculus
GN=Cecr5 PE=2 SV=1
Length = 419
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Query: 4 SPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQ 63
SP+FGL+FDIDGVLVRG +V+P + F +KL NS G+ VP VFVTNAGN L +KA++
Sbjct: 44 SPTFGLLFDIDGVLVRGHRVIPAALEAF-SKLVNSQGQLRVPVVFVTNAGNILQHNKAQE 102
Query: 64 LTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVDSIRN 123
L++ L +V+ DQV++SH+P+K+ +YH+K L+SGQGP+ E A+ LGF VVT+D +R
Sbjct: 103 LSDLLRCKVDPDQVILSHSPMKLFLQYHSKQMLVSGQGPLVENARALGFQNVVTIDELRL 162
Query: 124 AHPLLDCVDHRRR 136
A P LD VD +RR
Sbjct: 163 AFPELDMVDLQRR 175
>sp|Q9BXW7|CECR5_HUMAN Cat eye syndrome critical region protein 5 OS=Homo sapiens GN=CECR5
PE=1 SV=1
Length = 423
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 95/137 (69%), Gaps = 1/137 (0%)
Query: 5 PSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQL 64
P+FG + DIDGVLVRG +V+P F +L NS G+ VP VFVTNAGN L KA++L
Sbjct: 45 PTFGFLLDIDGVLVRGHRVIPAALKAF-RRLVNSQGQLRVPVVFVTNAGNILQHSKAQEL 103
Query: 65 TEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVDSIRNA 124
+ LG EV+ DQV++SH+P+K+ +YH K L+SGQGP+ E A+ LGF VVTVD +R A
Sbjct: 104 SALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDELRMA 163
Query: 125 HPLLDCVDHRRRVSLFP 141
PLLD VD RR+ P
Sbjct: 164 FPLLDMVDLERRLKTTP 180
>sp|P36151|YK50_YEAST Uncharacterized protein YKR070W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YKR070W PE=1 SV=1
Length = 352
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 4 SPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQ 63
S FDIDGVL RGK+ + G D KL N R +P + +TN G + +
Sbjct: 11 SKKIAFAFDIDGVLFRGKKPIAGASDAL--KLLN---RNKIPYILLTNGGGFSERARTEF 65
Query: 64 LTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVV 116
++ L V+V Q++ SHTP K L +++ L G + +A+ GF VV
Sbjct: 66 ISSKLDVDVSPLQIIQSHTPYKSLVNKYSR-ILAVGTPSVRGVAEGYGFQDVV 117
>sp|O13899|YF38_SCHPO Uncharacterized CDP-alcohol phosphatidyltransferase class-I family
protein C22A12.08c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC22A12.08c PE=3 SV=1
Length = 570
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 11 FD-IDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLG 69
FD IDGVL+RG + L T N+ +P + +TN G + +A++L++ L
Sbjct: 42 FDSIDGVLIRGGRGLKEGTKTLKFLQKNN-----IPFILLTNGGGMHESVRAQRLSKTLS 96
Query: 70 VEVEEDQVVMSHTPIKMLHKYHTKHTLISG--QGPMEEIAKRLGFNKVV 116
V + ED SHTP + L + KH L+ G + E A++ GF V+
Sbjct: 97 VSLTEDDFCQSHTPFRALADKY-KHVLVLGGKDNSVRETAEKYGFKSVI 144
>sp|P94526|ARAL_BACSU Arabinose operon protein AraL OS=Bacillus subtilis (strain 168)
GN=araL PE=2 SV=1
Length = 272
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 10/107 (9%)
Query: 3 LSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAK 62
+SP+ G++ D+DG + RG +++ G ++ + L G + VF++N GN A K
Sbjct: 11 VSPA-GILIDLDGTVFRGNELIEGAREA-IKTLRRMGKKI----VFLSNRGNISRAMCRK 64
Query: 63 QLTEWLGVEVEEDQVVMSHTPIKMLHKYH---TKHTLISGQGPMEEI 106
+L G+E + + +V+S + K H +K ++ QG ++E+
Sbjct: 65 KLLG-AGIETDVNDIVLSSSVTAAFLKKHYRFSKVWVLGEQGLVDEL 110
>sp|P60487|PLPP_MOUSE Pyridoxal phosphate phosphatase OS=Mus musculus GN=Pdxp PE=1 SV=1
Length = 292
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 1 EILSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
++L + G++FD DGVL G++++PG + + +L +G T+FV+N
Sbjct: 14 DVLGQAQGVLFDCDGVLWNGERIVPGAPE-LLQRLARAGKN----TLFVSN 59
>sp|Q5WWH1|SYH_LEGPL Histidine--tRNA ligase OS=Legionella pneumophila (strain Lens)
GN=hisS PE=3 SV=1
Length = 426
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 6 SFGLIFDIDGVLVRG-----KQVLPGVQDTFMNKLT-NSGGRFVVPTVFVTNAGNSLAAD 59
+ G+ + I+ VLVRG + V V D ++ T +GGR+ + F+ A
Sbjct: 247 TLGIPYSINPVLVRGLDYYGQTVFEWVTDQLGSQATICAGGRYDMLVEFLGGAP------ 300
Query: 60 KAKQLTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVD 119
T +G + +++ + + +L++ + K ++ E I K L V +
Sbjct: 301 -----TPAVGFALGLERIFLLMETLNLLNESNNKQSIFIIATNEEAILKAL-----VMAE 350
Query: 120 SIRNAHPLLDCV 131
SIRNAHP LD +
Sbjct: 351 SIRNAHPSLDVI 362
>sp|Q5ZV96|SYH_LEGPH Histidine--tRNA ligase OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=hisS
PE=3 SV=1
Length = 426
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 6 SFGLIFDIDGVLVRG-----KQVLPGVQDTFMNKLT-NSGGRFVVPTVFVTNAGNSLAAD 59
+ G+ + I+ VLVRG + V V D ++ T +GGR+ + F+ A
Sbjct: 247 TLGIPYSINPVLVRGLDYYGQTVFEWVTDQLGSQATICAGGRYDMLVEFLGGAP------ 300
Query: 60 KAKQLTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVD 119
T +G + +++ + + +L++ + K ++ E I K L V +
Sbjct: 301 -----TPAVGFALGLERIFLLMETLNLLNESNNKQSIFIIATNEEAILKAL-----VMAE 350
Query: 120 SIRNAHPLLDCV 131
SIRNAHP LD +
Sbjct: 351 SIRNAHPSLDVI 362
>sp|Q5X519|SYH_LEGPA Histidine--tRNA ligase OS=Legionella pneumophila (strain Paris)
GN=hisS PE=3 SV=1
Length = 426
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 6 SFGLIFDIDGVLVRG-----KQVLPGVQDTFMNKLT-NSGGRFVVPTVFVTNAGNSLAAD 59
+ G+ + I+ VLVRG + V V D ++ T +GGR+ + F+ A
Sbjct: 247 TLGIPYSINPVLVRGLDYYGQTVFEWVTDQLGSQATICAGGRYDMLVEFLGGAP------ 300
Query: 60 KAKQLTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVD 119
T +G + +++ + + +L++ + K ++ E I K L V +
Sbjct: 301 -----TPAVGFALGLERIFLLMETLNLLNESNNKQSIFIIATNEEAILKAL-----VMAE 350
Query: 120 SIRNAHPLLDCV 131
SIRNAHP LD +
Sbjct: 351 SIRNAHPSLDVI 362
>sp|Q8VD52|PLPP_RAT Pyridoxal phosphate phosphatase OS=Rattus norvegicus GN=Pdxp PE=1
SV=2
Length = 309
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 1 EILSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
++L + G++FD DGVL G++++PG + + +L +G T+FV+N
Sbjct: 14 DVLGQAQGVLFDCDGVLWNGERIVPGAPE-LLQRLAQAGKA----TLFVSN 59
>sp|Q00472|PNPP_SCHPO 4-nitrophenylphosphatase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pho2 PE=4 SV=2
Length = 298
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTE-W 67
+FD DGVL G + +PGV DT KL S G+ + +FV+N ++ E
Sbjct: 21 FLFDCDGVLWSGSKPIPGVTDTM--KLLRSLGKQI---IFVSNNSTKSRETYMNKINEHG 75
Query: 68 LGVEVEE--DQVVMSHTPIKMLHKYHT-KHTLISGQGPMEEIAKRLGFNKVVTVD-SIRN 123
+ ++EE S T +K + K K + G+ +E+ R+G + D S+R
Sbjct: 76 IAAKLEEIYPSAYSSATYVKKVLKLPADKKVFVLGEAGIEDELDRVGVAHIGGTDPSLRR 135
Query: 124 A 124
A
Sbjct: 136 A 136
>sp|P46351|YTH1_PANTH Uncharacterized 45.4 kDa protein in thiaminase I 5'region
OS=Paenibacillus thiaminolyticus PE=4 SV=1
Length = 413
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWL 68
+FD+DGV+ G + LPG + + SGG+ + F+TN A +L L
Sbjct: 9 FLFDLDGVIYVGPEALPGAVEAL--ERLRSGGKTI---RFLTNNPCMTREQTAARLNR-L 62
Query: 69 GVEVEEDQVVMS 80
G+E +D+V+ S
Sbjct: 63 GIEAAKDEVISS 74
>sp|P19881|PNPP_YEAST 4-nitrophenylphosphatase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PHO13 PE=1 SV=2
Length = 312
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 1 EILSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADK 60
E L +FD DGVL G Q LP + +N L G + +FVTN
Sbjct: 19 EFLDKYDTFLFDCDGVLWLGSQALPYTLE-ILNLLKQLGKQL----IFVTNNSTKSRLAY 73
Query: 61 AKQLTEWLGVEVEEDQVVMS 80
K+ + G++V+E+Q+ S
Sbjct: 74 TKKFASF-GIDVKEEQIFTS 92
>sp|Q2T9S4|PGP_BOVIN Phosphoglycolate phosphatase OS=Bos taurus GN=PGP PE=2 SV=1
Length = 321
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
L+FD DGVL RG+ +PG +T + L G R F+TN
Sbjct: 31 LLFDCDGVLWRGETAVPGAPET-LTALRARGKRL----AFITN 68
>sp|P77779|YBFO_ECOLI Putative uncharacterized protein YbfO OS=Escherichia coli (strain
K12) GN=ybfO PE=5 SV=1
Length = 477
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 27 VQDTFMNKLTNSGGRFVVPTVFVT---NAGNSLAADK-AKQLTEWL---GVEVEEDQVVM 79
+ DT GG V P V V + + AD+ +++ WL G+ VE+ Q M
Sbjct: 152 LADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQM 211
Query: 80 S--HTPIKMLHKYHTKH-----TLISGQGPMEEIAK 108
+TP + +H YH H L+S +G E A+
Sbjct: 212 DPVYTPARKIHLYHCDHRGLPLALVSTEGATEWCAE 247
>sp|Q96GD0|PLPP_HUMAN Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2
Length = 296
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 1 EILSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
++L + G++FD DGVL G++ +PG + + +L +G +FV+N
Sbjct: 14 DVLGRAQGVLFDCDGVLWNGERAVPGAPE-LLERLARAG----KAALFVSN 59
>sp|Q2FTM0|Y2548_METHJ Putative HTH-type transcriptional regulatory protein Mhun_2548
OS=Methanospirillum hungatei (strain JF-1 / DSM 864)
GN=Mhun_2548 PE=3 SV=1
Length = 306
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 66 EWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVDSIRNAH 125
E +G+ V+ M H P + L +Y + HT+++G G +++A+R G + + + H
Sbjct: 214 EEMGMHVQP----MYHAPFQALVRYDS-HTILTGYGSAQKVARRAGI--IGNISQVTRTH 266
Query: 126 PLLDCVDHRRR 136
+ D +R+
Sbjct: 267 AMCVMTDDQRQ 277
>sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1
Length = 763
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 72 VEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVDSIRNAHPLLDCV 131
+ +Q TP+ K + G P +EI+ N ++ + RN +PL
Sbjct: 691 IHSEQAERDPTPLHRAAKLLINSQMEDGDFPQQEISGVFMKNCMLHYAAYRNIYPLWALA 750
Query: 132 DHRRRVSL 139
++RRRV L
Sbjct: 751 EYRRRVPL 758
>sp|P0AF24|NAGD_ECOLI Ribonucleotide monophosphatase NagD OS=Escherichia coli (strain
K12) GN=nagD PE=1 SV=1
Length = 250
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWL 68
+I DIDGVL+ +PG + F++ + + G +P V +TN + D A +
Sbjct: 6 VICDIDGVLMHDNVAVPGAAE-FLHGIMDKG----LPLVLLTNYPSQTGQDLANRFAT-A 59
Query: 69 GVEVEEDQVVMSHTPIK-MLHKYHTKHTLISGQGPMEEIAKRLGF 112
GV+V + S L + K + G+G + + GF
Sbjct: 60 GVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGF 104
>sp|P0AF25|NAGD_ECO57 Ribonucleotide monophosphatase NagD OS=Escherichia coli O157:H7
GN=nagD PE=3 SV=1
Length = 250
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWL 68
+I DIDGVL+ +PG + F++ + + G +P V +TN + D A +
Sbjct: 6 VICDIDGVLMHDNVAVPGAAE-FLHGIMDKG----LPLVLLTNYPSQTGQDLANRFAT-A 59
Query: 69 GVEVEEDQVVMSHTPIK-MLHKYHTKHTLISGQGPMEEIAKRLGF 112
GV+V + S L + K + G+G + + GF
Sbjct: 60 GVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGF 104
>sp|A6NDG6|PGP_HUMAN Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1
Length = 321
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQL 64
L+FD DGVL RG+ +PG + + L G R F+TN + A A++L
Sbjct: 31 LLFDCDGVLWRGETAVPGAPEA-LRALRARGKRL----GFITNNSSKTRAAYAEKL 81
>sp|Q8CHP8|PGP_MOUSE Phosphoglycolate phosphatase OS=Mus musculus GN=Pgp PE=2 SV=1
Length = 321
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51
L+FD DGVL RG+ +PG +T + L G R F+TN
Sbjct: 31 LLFDCDGVLWRGETAVPGAPET-LRALRARGKRL----GFITN 68
>sp|P43470|PTS3B_PEDPE PTS system sucrose-specific EIIBCA component OS=Pediococcus
pentosaceus GN=scrA PE=4 SV=1
Length = 651
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 7 FGLIFDIDGVLVRG-KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLA-------- 57
FGL++ +++ G Q P ++ + + +GG F+ P + N G A
Sbjct: 311 FGLLYS--AIVITGLHQTFPAIETQLLANVAKTGGSFIFPVASMANIGQGAATLAIFFAT 368
Query: 58 -ADKAKQLTEWLGV 70
+ K K LT GV
Sbjct: 369 KSQKQKALTSSAGV 382
>sp|Q9RQB4|HMCT_HELFE Cadmium, zinc and cobalt-transporting ATPase OS=Helicobacter felis
GN=cadA PE=3 SV=1
Length = 681
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 85 KMLHKYHTKHTLISGQGPMEEIA---KRLGFNKVVTVDSIR-NAHPLLDCVDH 133
KMLHKY+ H S +G + +A K +G+ +V D+++ NA LD + H
Sbjct: 471 KMLHKYNIPHDTCSLEGTIVHVAVDGKHIGY--IVVADTLKDNAKECLDGLKH 521
>sp|P16916|RHSA_ECOLI Protein RhsA OS=Escherichia coli (strain K12) GN=rhsA PE=3 SV=1
Length = 1377
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 39 GGRFVVPTVFVT---NAGNSLAADK-AKQLTEWL---GVEVEEDQVVMS--HTPIKMLHK 89
GG V P V V + + AD+ +++ WL G+ VE+ Q M +TP + +H
Sbjct: 1086 GGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHL 1145
Query: 90 YHTKH-----TLISGQGPMEEIAK 108
YH H LIS +G E A+
Sbjct: 1146 YHCDHRGLPLALISKEGTTEWCAE 1169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,292,923
Number of Sequences: 539616
Number of extensions: 2444305
Number of successful extensions: 6532
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6520
Number of HSP's gapped (non-prelim): 28
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)