Query psy17092
Match_columns 183
No_of_seqs 208 out of 1441
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 21:41:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13344 Hydrolase_6: Haloacid 99.9 4.4E-27 9.5E-32 172.6 11.5 99 9-113 1-101 (101)
2 COG0647 NagD Predicted sugar p 99.9 2.8E-26 6E-31 194.6 12.8 166 2-178 4-173 (269)
3 KOG1618|consensus 99.9 7.9E-26 1.7E-30 193.5 11.5 132 4-136 33-164 (389)
4 TIGR01456 CECR5 HAD-superfamil 99.9 7.6E-24 1.6E-28 183.4 12.8 169 8-178 2-210 (321)
5 KOG2882|consensus 99.9 7.9E-24 1.7E-28 180.2 12.4 151 2-158 18-240 (306)
6 PRK10444 UMP phosphatase; Prov 99.9 8.9E-22 1.9E-26 165.2 12.4 116 6-127 1-131 (248)
7 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.9 6.5E-21 1.4E-25 159.5 14.3 157 6-178 1-161 (249)
8 TIGR01452 PGP_euk phosphoglyco 99.8 7.2E-20 1.6E-24 155.2 14.1 109 6-120 2-113 (279)
9 TIGR01460 HAD-SF-IIA Haloacid 99.8 8.4E-20 1.8E-24 151.6 13.3 100 9-113 1-102 (236)
10 PLN02645 phosphoglycolate phos 99.8 4.1E-20 8.9E-25 159.3 11.3 110 3-118 25-138 (311)
11 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.8 1.4E-18 2.9E-23 146.3 10.4 116 6-128 1-132 (257)
12 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.6 3.3E-14 7.1E-19 118.1 10.7 105 1-112 3-116 (242)
13 KOG3040|consensus 99.5 2.5E-13 5.5E-18 111.2 8.7 118 4-128 5-134 (262)
14 TIGR01662 HAD-SF-IIIA HAD-supe 98.9 1.6E-08 3.6E-13 75.9 10.8 102 7-116 1-129 (132)
15 TIGR01664 DNA-3'-Pase DNA 3'-p 98.7 2E-07 4.4E-12 73.8 10.3 105 4-115 11-159 (166)
16 cd01427 HAD_like Haloacid deha 98.6 2E-07 4.4E-12 67.7 6.6 64 8-80 1-73 (139)
17 TIGR01668 YqeG_hyp_ppase HAD s 98.6 7.5E-07 1.6E-11 70.5 10.2 104 4-116 23-134 (170)
18 PRK13288 pyrophosphatase PpaX; 98.5 1.1E-06 2.4E-11 71.0 10.8 85 22-115 82-179 (214)
19 TIGR01656 Histidinol-ppas hist 98.5 1.4E-06 3E-11 67.1 10.5 102 7-115 1-142 (147)
20 PF09419 PGP_phosphatase: Mito 98.5 1.1E-06 2.3E-11 70.3 8.9 106 4-112 39-158 (168)
21 PRK06769 hypothetical protein; 98.4 3.2E-06 7E-11 67.1 10.4 103 4-116 2-135 (173)
22 TIGR00213 GmhB_yaeD D,D-heptos 98.4 7.3E-06 1.6E-10 64.9 11.8 43 7-54 2-53 (176)
23 TIGR01672 AphA HAD superfamily 98.4 4.4E-06 9.6E-11 70.1 11.0 101 8-115 65-208 (237)
24 TIGR01261 hisB_Nterm histidino 98.4 8E-06 1.7E-10 64.4 11.6 107 7-120 2-150 (161)
25 COG2179 Predicted hydrolase of 98.4 1.7E-06 3.7E-11 68.9 7.5 99 5-116 27-136 (175)
26 PRK11587 putative phosphatase; 98.3 4.1E-06 8.9E-11 68.1 10.0 83 23-115 84-179 (218)
27 TIGR01681 HAD-SF-IIIC HAD-supe 98.3 4.6E-07 1E-11 68.6 4.1 44 7-55 1-57 (128)
28 TIGR01533 lipo_e_P4 5'-nucleot 98.3 4.7E-06 1E-10 71.1 10.4 90 5-101 74-197 (266)
29 PRK08942 D,D-heptose 1,7-bisph 98.3 1.2E-05 2.6E-10 63.7 12.1 103 5-115 2-144 (181)
30 TIGR02461 osmo_MPG_phos mannos 98.3 1.4E-06 3E-11 72.1 6.4 55 8-71 1-55 (225)
31 TIGR02253 CTE7 HAD superfamily 98.3 7.8E-06 1.7E-10 66.0 10.2 83 25-116 97-193 (221)
32 TIGR01684 viral_ppase viral ph 98.3 2.8E-06 6.1E-11 73.3 7.3 71 4-83 124-198 (301)
33 PRK13226 phosphoglycolate phos 98.3 7.1E-06 1.5E-10 67.4 9.5 84 23-115 96-192 (229)
34 PLN03243 haloacid dehalogenase 98.3 7.4E-06 1.6E-10 69.2 9.7 84 23-115 110-206 (260)
35 PRK11009 aphA acid phosphatase 98.2 1.4E-05 3.1E-10 67.0 10.9 103 8-117 65-210 (237)
36 PRK14988 GMP/IMP nucleotidase; 98.2 9.1E-06 2E-10 66.9 9.5 84 24-116 95-191 (224)
37 PF13419 HAD_2: Haloacid dehal 98.2 7.7E-06 1.7E-10 62.2 8.1 85 22-115 77-174 (176)
38 TIGR03351 PhnX-like phosphonat 98.2 2.1E-05 4.5E-10 63.6 10.9 83 23-114 88-186 (220)
39 TIGR00338 serB phosphoserine p 98.2 2.2E-05 4.9E-10 63.4 10.8 110 2-120 10-197 (219)
40 PRK00192 mannosyl-3-phosphogly 98.2 2E-06 4.4E-11 72.5 4.6 59 4-71 2-61 (273)
41 PRK10826 2-deoxyglucose-6-phos 98.1 1.4E-05 3.1E-10 65.0 9.0 85 23-116 93-190 (222)
42 COG0546 Gph Predicted phosphat 98.1 3.5E-05 7.7E-10 63.1 11.3 84 23-115 90-186 (220)
43 PRK01158 phosphoglycolate phos 98.1 3.5E-06 7.6E-11 68.5 5.2 58 5-71 2-60 (230)
44 PRK10725 fructose-1-P/6-phosph 98.1 1.8E-06 3.9E-11 68.0 3.3 122 3-129 2-146 (188)
45 TIGR01670 YrbI-phosphatas 3-de 98.1 2E-05 4.4E-10 61.3 9.1 102 6-116 1-117 (154)
46 PRK13225 phosphoglycolate phos 98.1 9.4E-06 2E-10 69.1 7.6 85 22-115 142-236 (273)
47 TIGR01487 SPP-like sucrose-pho 98.1 5.1E-06 1.1E-10 67.4 5.6 57 6-71 1-58 (215)
48 COG0637 Predicted phosphatase/ 98.1 4.9E-06 1.1E-10 68.5 5.6 119 5-130 1-147 (221)
49 PF08645 PNK3P: Polynucleotide 98.1 2.7E-05 5.7E-10 61.4 9.5 106 7-121 1-158 (159)
50 PRK13222 phosphoglycolate phos 98.1 5.2E-05 1.1E-09 61.1 11.3 85 23-116 94-191 (226)
51 TIGR01486 HAD-SF-IIB-MPGP mann 98.1 6.8E-06 1.5E-10 68.5 6.1 55 8-71 1-56 (256)
52 PRK13478 phosphonoacetaldehyde 98.1 2.6E-05 5.7E-10 65.4 9.6 83 24-115 103-200 (267)
53 PHA02530 pseT polynucleotide k 98.1 2.6E-05 5.6E-10 66.2 9.6 105 5-115 157-293 (300)
54 PLN02575 haloacid dehalogenase 98.1 3E-05 6.5E-10 69.2 10.1 86 22-116 216-314 (381)
55 PLN02770 haloacid dehalogenase 98.1 2.3E-05 5E-10 65.3 8.8 83 24-115 110-205 (248)
56 PRK10513 sugar phosphate phosp 98.1 1.4E-05 3.1E-10 66.6 7.5 58 5-71 2-60 (270)
57 TIGR01689 EcbF-BcbF capsule bi 98.1 1.2E-05 2.7E-10 61.3 6.3 45 7-56 2-53 (126)
58 PRK10530 pyridoxal phosphate ( 98.0 7.9E-06 1.7E-10 68.0 5.7 58 5-71 2-60 (272)
59 PHA02597 30.2 hypothetical pro 98.0 6.3E-05 1.4E-09 59.9 10.7 85 22-116 74-172 (197)
60 TIGR01685 MDP-1 magnesium-depe 98.0 1.7E-05 3.6E-10 63.6 7.3 103 6-116 2-155 (174)
61 PRK03669 mannosyl-3-phosphogly 98.0 7.8E-06 1.7E-10 68.8 5.4 59 4-71 5-64 (271)
62 TIGR01454 AHBA_synth_RP 3-amin 98.0 2.7E-05 5.7E-10 62.5 8.2 85 22-115 75-172 (205)
63 TIGR01428 HAD_type_II 2-haloal 98.0 5.7E-05 1.2E-09 60.2 10.1 84 23-115 93-189 (198)
64 PLN02940 riboflavin kinase 98.0 3.7E-05 8.1E-10 68.4 9.9 85 23-115 94-191 (382)
65 smart00775 LNS2 LNS2 domain. T 98.0 1.5E-05 3.2E-10 62.7 6.4 45 8-57 1-57 (157)
66 PHA03398 viral phosphatase sup 98.0 1.2E-05 2.7E-10 69.4 6.4 69 5-82 127-199 (303)
67 PLN02954 phosphoserine phospha 98.0 4E-05 8.6E-10 62.1 9.1 40 23-71 85-124 (224)
68 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.0 9.8E-05 2.1E-09 58.4 10.8 87 23-118 81-190 (201)
69 TIGR01422 phosphonatase phosph 98.0 4.8E-05 1E-09 63.1 9.3 83 24-115 101-198 (253)
70 PRK10976 putative hydrolase; P 98.0 1.8E-05 3.9E-10 66.0 6.7 57 6-71 2-59 (266)
71 PRK15126 thiamin pyrimidine py 98.0 2E-05 4.3E-10 66.1 6.9 57 6-71 2-59 (272)
72 TIGR02463 MPGP_rel mannosyl-3- 98.0 7.3E-06 1.6E-10 66.5 4.1 55 8-71 1-56 (221)
73 PRK06698 bifunctional 5'-methy 98.0 5.2E-05 1.1E-09 68.7 9.8 85 23-116 331-425 (459)
74 PRK09484 3-deoxy-D-manno-octul 98.0 4.2E-05 9.2E-10 61.1 8.2 99 5-116 20-137 (183)
75 TIGR02009 PGMB-YQAB-SF beta-ph 98.0 4.3E-05 9.3E-10 59.7 8.1 82 23-115 89-183 (185)
76 TIGR01449 PGP_bact 2-phosphogl 97.9 6E-05 1.3E-09 60.3 8.9 85 22-115 85-182 (213)
77 COG0561 Cof Predicted hydrolas 97.9 1.7E-05 3.7E-10 66.1 5.2 59 4-71 1-60 (264)
78 PRK13223 phosphoglycolate phos 97.9 7.4E-05 1.6E-09 63.3 8.8 83 24-115 103-198 (272)
79 PTZ00174 phosphomannomutase; P 97.9 3.5E-05 7.7E-10 64.2 6.7 55 3-65 2-57 (247)
80 PRK12702 mannosyl-3-phosphogly 97.9 3.4E-05 7.4E-10 66.7 6.7 57 6-71 1-58 (302)
81 PRK05446 imidazole glycerol-ph 97.9 0.00028 6.1E-09 62.5 12.5 112 6-124 2-160 (354)
82 TIGR01663 PNK-3'Pase polynucle 97.9 4.8E-05 1E-09 70.5 7.8 65 3-72 165-250 (526)
83 PRK09449 dUMP phosphatase; Pro 97.9 0.00011 2.5E-09 59.4 9.2 83 24-116 97-194 (224)
84 TIGR00099 Cof-subfamily Cof su 97.8 1.9E-05 4.1E-10 65.6 4.2 55 8-71 1-56 (256)
85 TIGR01482 SPP-subfamily Sucros 97.8 2.4E-05 5.2E-10 63.3 4.4 54 9-71 1-55 (225)
86 TIGR02726 phenyl_P_delta pheny 97.8 0.00011 2.4E-09 58.6 8.1 115 4-128 5-137 (169)
87 PF03767 Acid_phosphat_B: HAD 97.7 4.1E-05 8.8E-10 63.8 4.7 62 4-71 70-158 (229)
88 TIGR01686 FkbH FkbH-like domai 97.7 3.1E-05 6.7E-10 67.1 4.1 47 4-55 1-59 (320)
89 PF08282 Hydrolase_3: haloacid 97.6 0.00013 2.8E-09 58.6 5.9 54 9-71 1-55 (254)
90 PLN02887 hydrolase family prot 97.6 7.1E-05 1.5E-09 70.2 4.8 59 3-70 305-364 (580)
91 TIGR01549 HAD-SF-IA-v1 haloaci 97.6 0.00021 4.5E-09 54.5 6.5 33 24-61 66-98 (154)
92 TIGR01990 bPGM beta-phosphoglu 97.6 9.1E-05 2E-09 57.9 4.6 60 8-74 1-62 (185)
93 PRK10563 6-phosphogluconate ph 97.5 0.00017 3.6E-09 58.4 5.7 119 4-130 2-147 (221)
94 TIGR02247 HAD-1A3-hyp Epoxide 97.5 0.00035 7.5E-09 56.2 7.5 86 23-115 95-193 (211)
95 TIGR01680 Veg_Stor_Prot vegeta 97.5 0.00023 5E-09 60.9 6.7 69 4-79 99-195 (275)
96 PRK09552 mtnX 2-hydroxy-3-keto 97.5 0.0027 6E-08 51.6 12.4 29 22-55 74-102 (219)
97 PRK11133 serB phosphoserine ph 97.5 0.00079 1.7E-08 58.8 9.7 88 22-118 181-291 (322)
98 TIGR01675 plant-AP plant acid 97.5 0.00023 4.9E-09 59.6 6.0 63 4-72 75-164 (229)
99 PLN02919 haloacid dehalogenase 97.4 0.0013 2.7E-08 65.8 10.4 95 24-127 163-276 (1057)
100 TIGR01484 HAD-SF-IIB HAD-super 97.4 0.00023 4.9E-09 56.9 4.2 50 8-65 1-52 (204)
101 PRK09456 ?-D-glucose-1-phospha 97.3 0.0011 2.5E-08 53.0 7.7 86 22-115 84-182 (199)
102 COG1011 Predicted hydrolase (H 97.2 0.0041 8.9E-08 50.0 10.2 68 44-115 115-196 (229)
103 TIGR01489 DKMTPPase-SF 2,3-dik 97.2 0.001 2.2E-08 51.9 6.2 14 8-21 3-16 (188)
104 COG0241 HisB Histidinol phosph 97.2 0.00067 1.4E-08 54.9 5.1 100 6-113 5-144 (181)
105 TIGR02471 sucr_syn_bact_C sucr 97.2 0.00052 1.1E-08 56.4 4.4 62 8-80 1-62 (236)
106 smart00577 CPDc catalytic doma 97.1 0.001 2.2E-08 51.3 5.3 64 7-80 3-94 (148)
107 COG2503 Predicted secreted aci 97.0 0.0015 3.2E-08 55.2 6.0 90 6-101 79-202 (274)
108 PRK14502 bifunctional mannosyl 97.0 0.00086 1.9E-08 63.9 4.9 57 6-71 416-473 (694)
109 TIGR02137 HSK-PSP phosphoserin 97.0 0.013 2.8E-07 47.8 11.3 96 22-128 68-182 (203)
110 PRK10187 trehalose-6-phosphate 97.0 0.0013 2.8E-08 55.7 5.4 55 7-70 15-76 (266)
111 KOG2914|consensus 97.0 0.0098 2.1E-07 49.6 10.5 93 22-119 92-197 (222)
112 PF08235 LNS2: LNS2 (Lipin/Ned 97.0 0.0013 2.7E-08 52.1 4.8 42 9-55 2-55 (157)
113 COG4850 Uncharacterized conser 97.0 0.0056 1.2E-07 53.7 9.1 94 7-105 162-290 (373)
114 PLN02423 phosphomannomutase 96.9 0.0022 4.8E-08 53.6 6.2 52 5-65 5-58 (245)
115 COG3769 Predicted hydrolase (H 96.9 0.0025 5.4E-08 53.4 6.3 58 4-71 5-63 (274)
116 PRK08238 hypothetical protein; 96.9 0.0087 1.9E-07 55.0 10.4 85 23-119 73-167 (479)
117 TIGR01485 SPP_plant-cyano sucr 96.9 0.0014 3.1E-08 54.4 4.8 55 8-71 3-61 (249)
118 TIGR01490 HAD-SF-IB-hyp1 HAD-s 96.7 0.0039 8.5E-08 49.5 5.5 40 23-71 88-127 (202)
119 PRK13582 thrH phosphoserine ph 96.5 0.0031 6.7E-08 50.2 4.0 38 24-71 70-107 (205)
120 TIGR01488 HAD-SF-IB Haloacid D 96.5 0.0064 1.4E-07 47.0 5.6 14 9-22 2-15 (177)
121 PF03031 NIF: NLI interacting 96.5 0.0025 5.4E-08 49.2 3.1 53 7-69 1-73 (159)
122 COG0560 SerB Phosphoserine pho 96.4 0.0096 2.1E-07 49.0 6.1 90 22-120 77-189 (212)
123 PLN02779 haloacid dehalogenase 96.4 0.0024 5.3E-08 54.5 2.6 33 4-39 38-71 (286)
124 KOG2961|consensus 96.3 0.028 6.1E-07 44.7 8.3 111 5-118 42-167 (190)
125 PF12689 Acid_PPase: Acid Phos 96.3 0.0081 1.8E-07 48.0 5.4 58 6-71 3-86 (169)
126 TIGR02252 DREG-2 REG-2-like, H 96.2 0.0038 8.1E-08 49.7 2.7 23 7-29 1-23 (203)
127 TIGR01548 HAD-SF-IA-hyp1 haloa 96.1 0.0035 7.6E-08 50.0 2.0 22 8-29 2-23 (197)
128 PRK10748 flavin mononucleotide 96.0 0.0032 6.9E-08 52.0 1.4 26 4-29 8-33 (238)
129 COG1778 Low specificity phosph 95.8 0.0087 1.9E-07 47.5 3.2 97 3-114 5-122 (170)
130 TIGR02254 YjjG/YfnB HAD superf 95.8 0.0051 1.1E-07 49.3 1.9 24 6-29 1-24 (224)
131 TIGR02252 DREG-2 REG-2-like, H 95.5 0.08 1.7E-06 42.0 7.9 84 22-115 105-202 (203)
132 TIGR01509 HAD-SF-IA-v3 haloaci 95.4 0.14 3.1E-06 39.3 8.7 83 23-115 86-181 (183)
133 TIGR02251 HIF-SF_euk Dullard-l 95.4 0.027 5.8E-07 44.2 4.6 55 7-71 2-81 (162)
134 TIGR02250 FCP1_euk FCP1-like p 95.4 0.038 8.2E-07 43.3 5.4 19 3-21 3-21 (156)
135 TIGR01545 YfhB_g-proteo haloac 95.4 0.051 1.1E-06 44.4 6.3 17 5-21 4-20 (210)
136 TIGR03333 salvage_mtnX 2-hydro 95.2 0.026 5.7E-07 45.7 4.2 27 22-53 70-96 (214)
137 PRK14501 putative bifunctional 95.1 0.03 6.5E-07 53.8 5.0 53 4-64 490-549 (726)
138 TIGR01993 Pyr-5-nucltdase pyri 95.1 0.01 2.2E-07 46.6 1.5 22 7-28 1-22 (184)
139 TIGR01990 bPGM beta-phosphoglu 94.8 0.16 3.4E-06 39.4 7.5 84 21-115 86-182 (185)
140 PLN03017 trehalose-phosphatase 94.7 0.045 9.6E-07 48.9 4.5 47 6-61 111-163 (366)
141 PF05116 S6PP: Sucrose-6F-phos 94.7 0.032 6.9E-07 46.7 3.4 65 6-80 2-67 (247)
142 COG4996 Predicted phosphatase 94.6 0.081 1.8E-06 41.1 5.0 57 7-72 1-82 (164)
143 TIGR01493 HAD-SF-IA-v2 Haloaci 94.5 0.012 2.6E-07 45.6 0.4 22 8-29 1-22 (175)
144 PLN02382 probable sucrose-phos 94.5 0.1 2.2E-06 47.1 6.5 67 5-80 8-77 (413)
145 TIGR01511 ATPase-IB1_Cu copper 94.2 0.39 8.4E-06 44.9 9.8 97 6-113 385-488 (562)
146 PF00702 Hydrolase: haloacid d 94.0 0.19 4.2E-06 39.5 6.3 76 15-101 120-204 (215)
147 PLN02205 alpha,alpha-trehalose 93.8 0.12 2.7E-06 50.8 5.8 52 5-64 595-651 (854)
148 TIGR00685 T6PP trehalose-phosp 93.7 0.13 2.8E-06 42.6 5.1 44 5-52 2-51 (244)
149 PLN02151 trehalose-phosphatase 93.7 0.13 2.7E-06 45.8 5.2 48 6-62 98-151 (354)
150 PLN02811 hydrolase 93.1 0.63 1.4E-05 37.6 8.1 89 20-116 76-182 (220)
151 PF00702 Hydrolase: haloacid d 93.0 0.059 1.3E-06 42.5 1.9 31 6-37 1-33 (215)
152 TIGR02245 HAD_IIID1 HAD-superf 92.9 0.28 6.1E-06 40.0 5.8 58 4-71 19-84 (195)
153 TIGR01509 HAD-SF-IA-v3 haloaci 92.9 0.035 7.6E-07 42.8 0.4 16 8-23 1-16 (183)
154 TIGR01525 ATPase-IB_hvy heavy 92.1 2 4.3E-05 40.1 11.0 114 6-128 364-485 (556)
155 TIGR01512 ATPase-IB2_Cd heavy 92.1 0.88 1.9E-05 42.3 8.6 99 8-116 344-450 (536)
156 PRK11590 hypothetical protein; 92.0 0.085 1.8E-06 42.7 1.6 17 5-21 5-21 (211)
157 TIGR02254 YjjG/YfnB HAD superf 91.4 1.4 3.1E-05 34.9 8.2 86 21-116 96-196 (224)
158 PF06888 Put_Phosphatase: Puta 91.2 0.69 1.5E-05 38.8 6.3 52 22-80 71-122 (234)
159 PLN02580 trehalose-phosphatase 90.7 0.52 1.1E-05 42.4 5.4 50 6-64 119-174 (384)
160 PLN02779 haloacid dehalogenase 90.7 0.51 1.1E-05 40.3 5.2 87 22-117 144-245 (286)
161 PTZ00445 p36-lilke protein; Pr 89.9 0.4 8.7E-06 39.9 3.7 43 5-52 42-100 (219)
162 KOG1615|consensus 88.6 0.93 2E-05 37.5 4.9 42 22-72 88-129 (227)
163 COG1877 OtsB Trehalose-6-phosp 88.5 1 2.2E-05 38.6 5.3 49 5-60 17-71 (266)
164 PF06941 NT5C: 5' nucleotidase 88.3 1 2.2E-05 35.8 5.0 49 17-70 68-120 (191)
165 TIGR01691 enolase-ppase 2,3-di 87.8 1.8 4E-05 35.7 6.3 90 22-117 95-195 (220)
166 PLN03063 alpha,alpha-trehalose 87.5 1.1 2.4E-05 43.8 5.6 52 6-64 507-567 (797)
167 PRK10748 flavin mononucleotide 86.6 2.7 5.8E-05 34.5 6.7 80 21-115 112-205 (238)
168 PF06189 5-nucleotidase: 5'-nu 86.1 2.2 4.8E-05 36.5 6.0 72 8-81 123-222 (264)
169 PRK11033 zntA zinc/cadmium/mer 86.1 4.2 9E-05 39.5 8.6 94 7-111 549-648 (741)
170 PF02358 Trehalose_PPase: Treh 85.9 0.77 1.7E-05 37.7 3.1 43 10-59 1-49 (235)
171 PF05152 DUF705: Protein of un 85.7 3.1 6.7E-05 36.2 6.7 69 5-82 121-193 (297)
172 PF12710 HAD: haloacid dehalog 85.4 0.39 8.5E-06 37.2 1.1 13 9-21 1-13 (192)
173 TIGR01497 kdpB K+-transporting 84.5 3.2 7E-05 40.0 6.9 86 14-112 438-529 (675)
174 COG2217 ZntA Cation transport 84.3 2.6 5.7E-05 40.8 6.3 81 8-101 519-608 (713)
175 COG3882 FkbH Predicted enzyme 84.1 1.5 3.3E-05 40.8 4.3 16 5-20 221-236 (574)
176 PRK10671 copA copper exporting 84.0 11 0.00023 37.1 10.4 94 7-113 631-734 (834)
177 PF06437 ISN1: IMP-specific 5' 84.0 3.5 7.7E-05 37.2 6.5 57 5-66 146-205 (408)
178 PF11019 DUF2608: Protein of u 83.5 3.9 8.3E-05 34.5 6.3 30 43-73 97-126 (252)
179 COG0637 Predicted phosphatase/ 83.4 7 0.00015 31.9 7.7 89 19-116 83-184 (221)
180 PRK01122 potassium-transportin 83.4 3 6.5E-05 40.2 6.2 76 13-101 436-516 (679)
181 KOG2116|consensus 83.3 2.8 6.2E-05 40.2 5.9 60 7-72 531-605 (738)
182 PLN03064 alpha,alpha-trehalose 83.2 2.4 5.3E-05 42.3 5.6 53 6-65 591-658 (934)
183 PRK10563 6-phosphogluconate ph 83.1 7.9 0.00017 30.9 7.8 83 21-115 87-183 (221)
184 COG4087 Soluble P-type ATPase 83.0 7.9 0.00017 30.2 7.2 84 7-102 15-103 (152)
185 TIGR01522 ATPase-IIA2_Ca golgi 82.9 6.3 0.00014 39.0 8.4 106 15-129 521-657 (884)
186 TIGR01548 HAD-SF-IA-hyp1 haloa 82.0 3.7 8E-05 32.4 5.4 71 22-101 106-187 (197)
187 PRK14010 potassium-transportin 81.0 4.1 8.8E-05 39.3 6.2 74 15-101 434-512 (673)
188 PLN02811 hydrolase 80.8 0.85 1.8E-05 36.9 1.3 52 13-71 1-54 (220)
189 PF01740 STAS: STAS domain; I 79.2 6 0.00013 28.4 5.3 66 5-81 47-114 (117)
190 TIGR01993 Pyr-5-nucltdase pyri 77.9 17 0.00038 28.0 8.0 82 22-115 84-182 (184)
191 KOG2134|consensus 77.0 3.6 7.9E-05 37.2 4.2 49 5-58 74-135 (422)
192 TIGR01544 HAD-SF-IE haloacid d 77.0 5.5 0.00012 34.3 5.2 42 20-70 119-160 (277)
193 PF04312 DUF460: Protein of un 75.6 13 0.00028 28.9 6.4 63 8-78 45-110 (138)
194 KOG3085|consensus 74.3 3.8 8.2E-05 34.6 3.5 24 3-26 4-27 (237)
195 cd06259 YdcF-like YdcF-like. Y 72.8 34 0.00075 25.5 8.3 93 14-113 1-120 (150)
196 PF13433 Peripla_BP_5: Peripla 71.7 15 0.00032 33.0 6.7 55 8-63 4-59 (363)
197 TIGR00035 asp_race aspartate r 71.4 55 0.0012 26.7 9.9 83 22-117 59-148 (229)
198 PF03709 OKR_DC_1_N: Orn/Lys/A 70.6 3.7 8E-05 30.3 2.3 41 4-53 37-77 (115)
199 COG5083 SMP2 Uncharacterized p 70.2 14 0.0003 34.3 6.2 70 5-80 374-458 (580)
200 KOG3109|consensus 69.7 4.1 8.8E-05 34.3 2.6 21 4-24 13-33 (244)
201 KOG0207|consensus 69.2 24 0.00052 35.3 8.0 84 5-101 702-794 (951)
202 PF00532 Peripla_BP_1: Peripla 69.1 13 0.00028 31.2 5.6 30 83-112 109-150 (279)
203 KOG3189|consensus 66.4 12 0.00025 31.3 4.6 30 7-37 12-42 (252)
204 COG4359 Uncharacterized conser 65.3 28 0.00061 28.7 6.5 39 22-69 73-111 (220)
205 PRK15122 magnesium-transportin 64.6 15 0.00032 36.7 5.7 48 15-71 543-590 (903)
206 TIGR02244 HAD-IG-Ncltidse HAD 64.2 8 0.00017 34.3 3.5 32 22-58 184-215 (343)
207 PF06189 5-nucleotidase: 5'-nu 64.1 43 0.00093 28.8 7.7 86 24-113 12-104 (264)
208 PTZ00106 60S ribosomal protein 63.9 55 0.0012 24.1 7.4 84 18-108 21-105 (108)
209 PRK10725 fructose-1-P/6-phosph 62.7 37 0.0008 26.0 6.8 85 20-115 86-183 (188)
210 PRK11590 hypothetical protein; 62.6 21 0.00045 28.7 5.5 40 22-70 95-135 (211)
211 TIGR01282 nifD nitrogenase mol 62.2 21 0.00046 32.8 6.0 133 33-176 271-421 (466)
212 TIGR01647 ATPase-IIIA_H plasma 62.1 22 0.00048 34.6 6.4 48 15-71 435-482 (755)
213 PLN02177 glycerol-3-phosphate 61.4 4.7 0.0001 37.5 1.6 19 7-25 23-41 (497)
214 PRK01018 50S ribosomal protein 61.2 59 0.0013 23.3 7.8 83 19-108 13-96 (99)
215 COG3700 AphA Acid phosphatase 60.9 58 0.0013 26.9 7.6 70 44-115 131-208 (237)
216 TIGR01524 ATPase-IIIB_Mg magne 60.6 22 0.00047 35.2 6.1 48 15-71 508-555 (867)
217 PF06941 NT5C: 5' nucleotidase 60.0 4.4 9.5E-05 32.1 1.0 13 9-21 5-17 (191)
218 TIGR01517 ATPase-IIB_Ca plasma 59.7 30 0.00064 34.6 6.9 48 15-71 572-619 (941)
219 cd07041 STAS_RsbR_RsbS_like Su 56.8 39 0.00084 23.8 5.5 63 5-78 40-102 (109)
220 cd00431 cysteine_hydrolases Cy 55.0 82 0.0018 23.6 7.4 42 8-54 2-51 (161)
221 TIGR03278 methan_mark_10 putat 55.0 27 0.00058 31.7 5.3 54 12-71 73-130 (404)
222 PF09949 DUF2183: Uncharacteri 54.7 28 0.00061 25.3 4.5 33 86-127 58-90 (100)
223 PRK13602 putative ribosomal pr 54.7 24 0.00052 24.5 4.0 49 19-72 8-56 (82)
224 PF02698 DUF218: DUF218 domain 54.0 69 0.0015 24.0 6.8 80 27-113 26-123 (155)
225 PRK10517 magnesium-transportin 53.8 24 0.00052 35.2 5.2 48 15-71 543-590 (902)
226 COG1180 PflA Pyruvate-formate 53.5 24 0.00053 29.8 4.5 47 12-65 83-132 (260)
227 PF12694 MoCo_carrier: Putativ 53.3 36 0.00077 26.7 5.0 34 11-49 62-96 (145)
228 PF12710 HAD: haloacid dehalog 53.1 21 0.00045 27.4 3.8 38 25-71 92-129 (192)
229 PLN02499 glycerol-3-phosphate 52.0 9.6 0.00021 35.5 2.0 20 6-25 8-27 (498)
230 PRK10494 hypothetical protein; 52.0 1.5E+02 0.0031 25.1 10.8 77 44-122 121-212 (259)
231 KOG0733|consensus 50.6 47 0.001 32.3 6.3 52 15-71 225-282 (802)
232 COG2216 KdpB High-affinity K+ 50.5 51 0.0011 31.4 6.4 103 14-129 439-549 (681)
233 PRK14987 gluconate operon tran 49.8 88 0.0019 26.2 7.4 22 153-174 259-281 (331)
234 TIGR02260 benz_CoA_red_B benzo 49.3 37 0.00081 30.7 5.3 50 11-65 349-407 (413)
235 cd03466 Nitrogenase_NifN_2 Nit 48.6 89 0.0019 28.2 7.6 72 42-114 245-326 (429)
236 KOG3107|consensus 48.6 45 0.00098 30.4 5.5 81 47-129 374-464 (468)
237 TIGR02468 sucrsPsyn_pln sucros 48.4 50 0.0011 33.7 6.4 59 11-80 777-838 (1050)
238 TIGR02886 spore_II_AA anti-sig 47.9 68 0.0015 22.4 5.6 56 5-71 38-93 (106)
239 TIGR01861 ANFD nitrogenase iro 47.4 52 0.0011 30.7 6.1 81 33-116 266-357 (513)
240 TIGR01284 alt_nitrog_alph nitr 47.2 66 0.0014 29.4 6.6 80 33-115 263-353 (457)
241 PF06506 PrpR_N: Propionate ca 47.2 1.1E+02 0.0023 24.0 7.1 88 25-117 61-149 (176)
242 PF09506 Salt_tol_Pase: Glucos 47.0 34 0.00073 30.6 4.4 70 8-85 4-81 (381)
243 COG0731 Fe-S oxidoreductases [ 47.0 67 0.0015 28.0 6.3 41 6-54 80-120 (296)
244 TIGR01285 nifN nitrogenase mol 46.7 68 0.0015 29.1 6.6 78 33-115 250-338 (432)
245 cd01968 Nitrogenase_NifE_I Nit 46.3 57 0.0012 29.1 6.0 82 33-117 222-316 (410)
246 cd06595 GH31_xylosidase_XylS-l 45.6 90 0.0019 26.6 6.9 43 5-52 40-96 (292)
247 TIGR02399 salt_tol_Pase glucos 45.5 35 0.00075 30.6 4.3 71 7-85 9-87 (389)
248 cd01966 Nitrogenase_NifN_1 Nit 45.4 80 0.0017 28.5 6.8 74 42-116 245-328 (417)
249 PRK05301 pyrroloquinoline quin 44.9 64 0.0014 28.3 6.0 49 16-71 66-116 (378)
250 TIGR02109 PQQ_syn_pqqE coenzym 44.5 68 0.0015 27.8 6.1 49 16-71 57-107 (358)
251 PRK11145 pflA pyruvate formate 43.9 62 0.0013 26.4 5.5 48 13-65 71-121 (246)
252 TIGR00377 ant_ant_sig anti-ant 43.4 57 0.0012 22.7 4.6 56 5-71 42-97 (108)
253 PRK10014 DNA-binding transcrip 43.1 1.2E+02 0.0027 25.3 7.3 14 161-174 281-294 (342)
254 COG0081 RplA Ribosomal protein 42.5 43 0.00093 28.2 4.2 78 92-179 72-149 (228)
255 cd01537 PBP1_Repressors_Sugar_ 42.4 1.2E+02 0.0026 23.5 6.8 16 84-99 110-125 (264)
256 cd06591 GH31_xylosidase_XylS X 42.1 76 0.0016 27.4 6.0 42 5-51 39-87 (319)
257 PF09547 Spore_IV_A: Stage IV 41.5 60 0.0013 30.1 5.3 63 7-73 147-213 (492)
258 COG5663 Uncharacterized conser 41.0 30 0.00065 28.1 3.0 51 8-63 8-59 (194)
259 PRK06186 hypothetical protein; 39.8 26 0.00056 29.4 2.6 36 9-49 50-88 (229)
260 PRK11303 DNA-binding transcrip 39.4 1.2E+02 0.0026 25.2 6.7 31 83-113 170-211 (328)
261 PRK14476 nitrogenase molybdenu 39.2 1E+02 0.0023 28.1 6.6 79 33-116 250-339 (455)
262 cd01977 Nitrogenase_VFe_alpha 38.9 1.1E+02 0.0023 27.5 6.6 81 33-116 226-317 (415)
263 cd07043 STAS_anti-anti-sigma_f 38.4 1.2E+02 0.0026 20.2 5.8 55 6-71 38-92 (99)
264 TIGR01116 ATPase-IIA1_Ca sarco 38.2 32 0.0007 34.2 3.4 48 15-71 530-577 (917)
265 COG0566 SpoU rRNA methylases [ 38.0 20 0.00043 30.3 1.7 80 10-101 132-213 (260)
266 TIGR01278 DPOR_BchB light-inde 37.8 84 0.0018 29.1 5.8 81 33-116 226-324 (511)
267 cd06285 PBP1_LacI_like_7 Ligan 37.6 1.8E+02 0.0038 23.2 7.2 21 154-174 196-217 (265)
268 cd01976 Nitrogenase_MoFe_alpha 37.2 69 0.0015 28.9 5.1 82 33-117 236-329 (421)
269 cd01545 PBP1_SalR Ligand-bindi 36.5 1.8E+02 0.004 23.0 7.1 16 84-99 110-125 (270)
270 TIGR01279 DPOR_bchN light-inde 36.4 78 0.0017 28.4 5.3 79 33-116 214-302 (407)
271 PRK11187 replication initiatio 35.9 44 0.00095 27.1 3.2 29 44-72 144-172 (182)
272 PRK02842 light-independent pro 35.6 1E+02 0.0022 27.7 6.0 79 33-115 227-318 (427)
273 TIGR01494 ATPase_P-type ATPase 35.4 44 0.00094 30.6 3.6 75 14-101 339-415 (499)
274 cd06598 GH31_transferase_CtsZ 34.9 1.3E+02 0.0029 25.9 6.3 60 5-70 39-109 (317)
275 cd01012 YcaC_related YcaC rela 34.8 1.9E+02 0.0042 21.8 6.7 102 9-116 3-118 (157)
276 cd01965 Nitrogenase_MoFe_beta_ 34.4 1.6E+02 0.0035 26.4 7.0 73 42-115 244-326 (428)
277 PRK02910 light-independent pro 34.3 1.1E+02 0.0024 28.4 6.1 81 33-116 226-322 (519)
278 TIGR01862 N2-ase-Ialpha nitrog 34.0 1.3E+02 0.0028 27.3 6.4 81 33-116 255-346 (443)
279 TIGR03677 rpl7ae 50S ribosomal 33.8 1.9E+02 0.0042 21.3 7.1 49 18-71 22-71 (117)
280 TIGR02495 NrdG2 anaerobic ribo 33.8 1.1E+02 0.0024 23.7 5.3 48 13-69 63-112 (191)
281 PRK13601 putative L7Ae-like ri 33.7 95 0.0021 21.7 4.3 46 22-72 8-53 (82)
282 COG0214 SNZ1 Pyridoxine biosyn 33.7 38 0.00082 29.0 2.6 48 61-109 92-140 (296)
283 cd06844 STAS Sulphate Transpor 33.7 67 0.0015 22.3 3.6 56 5-71 38-93 (100)
284 PF14597 Lactamase_B_5: Metall 33.3 72 0.0016 26.2 4.0 53 11-71 21-80 (199)
285 cd01974 Nitrogenase_MoFe_beta 33.2 1.6E+02 0.0036 26.5 6.9 79 33-115 242-330 (435)
286 CHL00076 chlB photochlorophyll 33.1 1.5E+02 0.0033 27.5 6.8 82 33-117 231-335 (513)
287 cd00578 L-fuc_L-ara-isomerases 33.1 2.8E+02 0.0061 25.0 8.4 107 12-128 63-206 (452)
288 cd06311 PBP1_ABC_sugar_binding 32.9 2.5E+02 0.0054 22.5 7.4 18 154-172 206-223 (274)
289 PF11017 DUF2855: Protein of u 32.7 90 0.002 27.4 4.9 36 91-126 161-197 (314)
290 PRK08335 translation initiatio 32.7 2E+02 0.0043 24.8 6.9 71 9-89 106-177 (275)
291 PRK10076 pyruvate formate lyas 32.2 1.1E+02 0.0024 25.0 5.1 39 12-55 38-79 (213)
292 COG1366 SpoIIAA Anti-anti-sigm 32.0 1.3E+02 0.0028 21.6 5.1 55 6-71 44-98 (117)
293 PF12683 DUF3798: Protein of u 31.2 1.5E+02 0.0034 25.6 5.9 85 22-115 70-167 (275)
294 PRK04175 rpl7ae 50S ribosomal 31.2 2.2E+02 0.0049 21.2 7.2 50 18-72 26-76 (122)
295 cd06277 PBP1_LacI_like_1 Ligan 30.9 1.6E+02 0.0035 23.5 5.9 17 84-100 110-126 (268)
296 TIGR03365 Bsubt_queE 7-cyano-7 30.8 65 0.0014 26.7 3.6 39 13-56 73-113 (238)
297 PRK06683 hypothetical protein; 30.6 97 0.0021 21.5 3.9 49 19-72 8-56 (82)
298 TIGR02417 fruct_sucro_rep D-fr 30.6 2.7E+02 0.0059 23.1 7.4 20 154-173 259-278 (327)
299 TIGR01508 rib_reduct_arch 2,5- 30.5 2.9E+02 0.0062 22.2 7.9 65 45-112 91-157 (210)
300 TIGR01860 VNFD nitrogenase van 30.4 97 0.0021 28.4 4.9 81 33-116 265-356 (461)
301 cd05014 SIS_Kpsf KpsF-like pro 30.3 86 0.0019 22.5 3.9 33 24-61 60-92 (128)
302 PRK05625 5-amino-6-(5-phosphor 30.2 2.7E+02 0.0058 22.3 7.1 66 44-112 94-161 (217)
303 COG2087 CobU Adenosyl cobinami 30.0 91 0.002 25.2 4.1 51 5-55 75-132 (175)
304 KOG1605|consensus 29.7 32 0.0007 29.4 1.6 56 5-66 88-145 (262)
305 PRK13233 nifH nitrogenase redu 29.3 2.3E+02 0.005 23.3 6.8 17 2-18 115-131 (275)
306 PF03925 SeqA: SeqA protein; 29.1 31 0.00066 28.2 1.3 29 44-72 152-180 (190)
307 cd01575 PBP1_GntR Ligand-bindi 28.9 2.1E+02 0.0045 22.6 6.2 21 154-174 198-219 (268)
308 PF04512 Baculo_PEP_N: Baculov 28.6 60 0.0013 23.6 2.6 22 8-36 6-27 (97)
309 PLN02588 glycerol-3-phosphate 28.2 38 0.00083 31.8 1.9 21 6-26 50-70 (525)
310 PF00148 Oxidored_nitro: Nitro 28.0 62 0.0013 28.4 3.2 80 33-115 209-298 (398)
311 COG1794 RacX Aspartate racemas 27.8 3.7E+02 0.008 22.7 10.1 82 33-127 69-158 (230)
312 TIGR03190 benz_CoA_bzdN benzoy 27.8 1.4E+02 0.0029 26.6 5.3 50 11-65 312-365 (377)
313 COG1087 GalE UDP-glucose 4-epi 27.8 3.2E+02 0.0069 24.3 7.4 95 13-123 216-315 (329)
314 cd01972 Nitrogenase_VnfE_like 27.5 2.1E+02 0.0045 25.7 6.5 80 33-115 230-321 (426)
315 COG0647 NagD Predicted sugar p 27.3 3.9E+02 0.0086 22.8 7.8 25 91-115 206-232 (269)
316 KOG3085|consensus 27.0 59 0.0013 27.4 2.7 87 21-117 112-212 (237)
317 cd01973 Nitrogenase_VFe_beta_l 26.9 2.3E+02 0.0049 26.0 6.7 75 41-116 248-333 (454)
318 COG4030 Uncharacterized protei 26.3 1.3E+02 0.0029 25.8 4.6 42 20-71 81-122 (315)
319 TIGR01283 nifE nitrogenase mol 26.3 1.8E+02 0.0039 26.4 5.9 82 33-117 261-355 (456)
320 TIGR02244 HAD-IG-Ncltidse HAD 26.2 35 0.00077 30.3 1.3 20 3-22 9-28 (343)
321 PRK00073 pgk phosphoglycerate 25.9 3.5E+02 0.0076 24.5 7.5 49 20-73 31-86 (389)
322 cd01037 Restriction_endonuclea 25.8 1E+02 0.0023 19.1 3.3 39 7-50 38-79 (80)
323 cd06298 PBP1_CcpA_like Ligand- 25.8 1.3E+02 0.0029 23.8 4.6 17 83-99 107-123 (268)
324 cd00316 Oxidoreductase_nitroge 25.7 3.4E+02 0.0074 23.5 7.4 79 33-114 217-305 (399)
325 TIGR03180 UraD_2 OHCU decarbox 25.6 74 0.0016 25.0 2.9 29 41-71 106-134 (158)
326 PRK13234 nifH nitrogenase redu 25.6 3.1E+02 0.0067 23.2 7.0 15 4-18 118-132 (295)
327 PTZ00005 phosphoglycerate kina 25.4 3.6E+02 0.0078 24.7 7.6 79 14-98 32-119 (417)
328 cd01536 PBP1_ABC_sugar_binding 25.4 1.6E+02 0.0036 23.0 5.0 20 154-174 202-221 (267)
329 PRK13762 tRNA-modifying enzyme 25.3 2.1E+02 0.0045 24.9 5.9 37 20-64 139-176 (322)
330 TIGR01657 P-ATPase-V P-type AT 25.2 78 0.0017 32.1 3.6 47 15-70 649-695 (1054)
331 PRK09189 uroporphyrinogen-III 25.2 3.7E+02 0.0079 21.7 7.6 83 22-115 7-97 (240)
332 TIGR01106 ATPase-IIC_X-K sodiu 25.0 66 0.0014 32.5 3.0 47 15-70 561-607 (997)
333 cd01967 Nitrogenase_MoFe_alpha 25.0 2.6E+02 0.0056 24.6 6.6 80 33-115 224-313 (406)
334 TIGR01523 ATPase-IID_K-Na pota 24.5 71 0.0015 32.5 3.2 48 15-71 639-686 (1053)
335 KOG2882|consensus 24.4 3.1E+02 0.0067 24.1 6.7 106 5-125 153-282 (306)
336 KOG2967|consensus 24.3 1.6E+02 0.0036 25.9 5.0 103 8-114 100-230 (314)
337 cd01543 PBP1_XylR Ligand-bindi 24.3 3.7E+02 0.0079 21.4 7.0 31 83-113 100-140 (265)
338 TIGR01658 EYA-cons_domain eyes 24.2 2.3E+02 0.005 24.4 5.7 81 47-129 179-270 (274)
339 TIGR00227 ribD_Cterm riboflavi 24.2 3.6E+02 0.0079 21.3 7.3 30 83-112 133-162 (216)
340 cd05006 SIS_GmhA Phosphoheptos 24.2 1.2E+02 0.0026 23.4 3.9 27 25-56 115-141 (177)
341 cd06270 PBP1_GalS_like Ligand 24.2 3.3E+02 0.0072 21.6 6.7 12 160-171 205-216 (268)
342 PRK14129 heat shock protein Hs 24.2 45 0.00098 24.7 1.3 18 5-22 18-35 (105)
343 TIGR02836 spore_IV_A stage IV 24.1 3.1E+02 0.0066 25.7 6.8 60 8-71 148-211 (492)
344 cd06592 GH31_glucosidase_KIAA1 23.7 1.7E+02 0.0037 25.0 5.0 42 5-51 45-91 (303)
345 PF01380 SIS: SIS domain SIS d 23.4 1.4E+02 0.003 21.2 3.9 27 25-56 67-93 (131)
346 KOG3120|consensus 23.3 2.1E+02 0.0045 24.4 5.2 41 22-70 84-124 (256)
347 COG3057 SeqA Negative regulato 23.2 1.2E+02 0.0026 24.1 3.6 29 44-72 143-171 (181)
348 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.2 1.5E+02 0.0033 21.1 4.0 28 25-57 60-87 (126)
349 KOG1387|consensus 23.2 2.3E+02 0.0051 25.8 5.8 35 45-79 78-112 (465)
350 PRK04203 rpl1P 50S ribosomal p 22.9 1.6E+02 0.0035 24.1 4.6 34 92-125 58-91 (215)
351 TIGR02931 anfK_nitrog Fe-only 22.9 3.2E+02 0.007 25.0 6.9 74 41-115 255-339 (461)
352 PF10881 DUF2726: Protein of u 22.7 3.1E+02 0.0067 19.9 6.3 23 44-66 102-124 (126)
353 cd02064 FAD_synthetase_N FAD s 22.6 3.8E+02 0.0082 20.9 7.2 49 21-71 9-71 (180)
354 PRK10669 putative cation:proto 22.4 5.8E+02 0.012 23.7 8.6 96 14-122 418-539 (558)
355 TIGR00815 sulP high affinity s 22.4 1.4E+02 0.003 27.9 4.5 64 6-80 494-559 (563)
356 COG0474 MgtA Cation transport 22.3 5.5E+02 0.012 25.8 8.9 101 19-128 544-677 (917)
357 PF00162 PGK: Phosphoglycerate 22.2 2.3E+02 0.005 25.6 5.7 74 21-100 30-113 (384)
358 PF13651 EcoRI_methylase: Aden 22.2 2E+02 0.0043 25.6 5.1 31 27-65 126-156 (336)
359 cd05710 SIS_1 A subgroup of th 22.1 1.2E+02 0.0025 22.0 3.2 28 25-57 61-88 (120)
360 COG2710 NifD Nitrogenase molyb 22.1 4.5E+02 0.0098 24.0 7.7 74 42-115 255-340 (456)
361 PLN03034 phosphoglycerate kina 22.1 4.1E+02 0.0089 24.9 7.3 48 21-73 114-168 (481)
362 COG0001 HemL Glutamate-1-semia 22.0 4E+02 0.0086 24.6 7.2 68 6-83 43-120 (432)
363 cd00318 Phosphoglycerate_kinas 22.0 5E+02 0.011 23.6 7.8 78 14-98 23-109 (397)
364 COG4502 5'(3')-deoxyribonucleo 21.9 3.2E+02 0.0069 21.7 5.7 68 7-81 51-122 (180)
365 TIGR03191 benz_CoA_bzdO benzoy 21.8 1.1E+02 0.0025 27.7 3.7 40 11-54 360-403 (430)
366 PF00455 DeoRC: DeoR C termina 21.8 3.3E+02 0.0071 20.9 5.9 49 45-100 21-70 (161)
367 KOG2832|consensus 21.7 1.9E+02 0.004 26.3 4.9 53 7-65 190-251 (393)
368 cd05013 SIS_RpiR RpiR-like pro 21.6 1.6E+02 0.0035 20.8 3.9 28 25-57 74-101 (139)
369 TIGR02494 PFLE_PFLC glycyl-rad 21.5 2.3E+02 0.005 23.7 5.3 46 13-65 126-174 (295)
370 TIGR00511 ribulose_e2b2 ribose 21.4 4.6E+02 0.01 22.6 7.3 70 9-88 112-182 (301)
371 TIGR03470 HpnH hopanoid biosyn 21.4 1.7E+02 0.0036 25.3 4.5 60 6-71 124-193 (318)
372 cd01574 PBP1_LacI Ligand-bindi 21.4 4.1E+02 0.0089 20.9 7.2 17 83-99 107-123 (264)
373 cd06278 PBP1_LacI_like_2 Ligan 21.4 3.6E+02 0.0078 21.1 6.3 15 85-99 108-122 (266)
374 PF09822 ABC_transp_aux: ABC-t 21.3 2E+02 0.0042 23.9 4.8 63 10-78 195-270 (271)
375 TIGR02329 propionate_PrpR prop 21.2 5.8E+02 0.013 23.9 8.3 79 44-125 98-179 (526)
376 PF02547 Queuosine_synth: Queu 21.2 1.4E+02 0.0029 26.7 3.9 73 26-106 185-261 (341)
377 TIGR03127 RuMP_HxlB 6-phospho 21.2 1.7E+02 0.0038 22.5 4.2 31 24-59 85-115 (179)
378 PRK01424 S-adenosylmethionine: 21.1 2.1E+02 0.0046 25.7 5.1 92 5-104 186-281 (366)
379 PRK14478 nitrogenase molybdenu 21.0 3.3E+02 0.0071 25.0 6.6 80 33-115 255-351 (475)
380 PRK05253 sulfate adenylyltrans 20.9 2.2E+02 0.0048 24.6 5.2 29 44-72 56-87 (301)
381 PTZ00029 60S ribosomal protein 20.8 1.8E+02 0.0039 23.9 4.4 32 92-124 61-92 (216)
382 PRK13663 hypothetical protein; 20.7 2.6E+02 0.0056 26.0 5.6 95 14-114 365-479 (493)
383 cd06273 PBP1_GntR_like_1 This 20.6 1.8E+02 0.004 23.0 4.4 14 161-174 207-220 (268)
384 PRK12404 stage V sporulation p 20.5 3.7E+02 0.0079 24.0 6.4 46 24-72 205-253 (334)
385 PRK15029 arginine decarboxylas 20.5 2E+02 0.0044 28.3 5.3 44 5-54 53-96 (755)
No 1
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.95 E-value=4.4e-27 Score=172.61 Aligned_cols=99 Identities=31% Similarity=0.585 Sum_probs=87.1
Q ss_pred EEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHH-HH
Q psy17092 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIK-ML 87 (183)
Q Consensus 9 iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~-~l 87 (183)
|+||||||||+|.+++|||.++| ++|++.| +|++|+|||+++++++++++|. .+|+++++++|+||+++++ ++
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l-~~L~~~g----~~~~~lTNns~~s~~~~~~~L~-~~Gi~~~~~~i~ts~~~~~~~l 74 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEAL-DALRERG----KPVVFLTNNSSRSREEYAKKLK-KLGIPVDEDEIITSGMAAAEYL 74 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHH-HHHHHTT----SEEEEEES-SSS-HHHHHHHHH-HTTTT--GGGEEEHHHHHHHHH
T ss_pred CEEeCccEeEeCCCcCcCHHHHH-HHHHHcC----CCEEEEeCCCCCCHHHHHHHHH-hcCcCCCcCEEEChHHHHHHHH
Confidence 79999999999999999999999 9999988 8999999999999999999997 6999999999999998876 67
Q ss_pred Hh-cCCCeEEEEcChhHHHHHHHCCCc
Q psy17092 88 HK-YHTKHTLISGQGPMEEIAKRLGFN 113 (183)
Q Consensus 88 ~~-~~~k~v~viG~~~~~~~l~~~G~~ 113 (183)
++ +.+++||++|+++++++++++||+
T Consensus 75 ~~~~~~~~v~vlG~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 75 KEHKGGKKVYVLGSDGLREELREAGFE 101 (101)
T ss_dssp HHHTTSSEEEEES-HHHHHHHHHTTEE
T ss_pred HhcCCCCEEEEEcCHHHHHHHHHcCCC
Confidence 65 678999999999999999999974
No 2
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.8e-26 Score=194.56 Aligned_cols=166 Identities=25% Similarity=0.371 Sum_probs=136.0
Q ss_pred CCCCceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH
Q psy17092 2 ILSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH 81 (183)
Q Consensus 2 ~~~~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~ 81 (183)
+.+.|++|+||||||||+|+++||||.++| ++|+++| +|++|||||++++++.+.++|.+.+|+++.+++|+||+
T Consensus 4 ~~~~y~~~l~DlDGvl~~G~~~ipga~e~l-~~L~~~g----~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~ 78 (269)
T COG0647 4 VMDKYDGFLFDLDGVLYRGNEAIPGAAEAL-KRLKAAG----KPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSG 78 (269)
T ss_pred hhhhcCEEEEcCcCceEeCCccCchHHHHH-HHHHHcC----CeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHH
Confidence 467899999999999999999999999999 9999988 89999999999999999999995588889999999999
Q ss_pred HHHH-HHHh-cCCCeEEEEcChhHHHHHHHCCCceeeCHHHHHhhcCCCcccccccccccCcchhhhHHHHHhh--hhcc
Q psy17092 82 TPIK-MLHK-YHTKHTLISGQGPMEEIAKRLGFNKVVTVDSIRNAHPLLDCVDHRRRVSLFPRYCSRAQSLLSS--ELKI 157 (183)
Q Consensus 82 ~a~~-~l~~-~~~k~v~viG~~~~~~~l~~~G~~~~~t~~~l~~a~p~l~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~ 157 (183)
.+++ ++.+ ++.++||++|.+++.++++.+||......+. .. +|++-...-+..+-+....+...+.+ ++--
T Consensus 79 ~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~~~~~-~~----~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~ 153 (269)
T COG0647 79 DATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELVDEEEP-AR----VDAVVVGLDRTLTYEKLAEALLAIAAGAPFIA 153 (269)
T ss_pred HHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEeccCCC-Cc----ccEEEEecCCCCCHHHHHHHHHHHHcCCcEEE
Confidence 9887 6655 5569999999999999999999987654444 11 33322211222344555566666666 8889
Q ss_pred ccccCCCCCCCCccccccccc
Q psy17092 158 TDRSLDHKAKIGRSEATTHTI 178 (183)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~~ 178 (183)
+|.|+.-|...| +.+.+|++
T Consensus 154 tNpD~~~p~~~g-~~pgaGai 173 (269)
T COG0647 154 TNPDLTVPTERG-LRPGAGAI 173 (269)
T ss_pred eCCCccccCCCC-CccCcHHH
Confidence 999999999999 88888876
No 3
>KOG1618|consensus
Probab=99.93 E-value=7.9e-26 Score=193.49 Aligned_cols=132 Identities=44% Similarity=0.813 Sum_probs=125.0
Q ss_pred CCceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHH
Q psy17092 4 SPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTP 83 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a 83 (183)
++..+|+|||||||++|.+++|+|.+++ ++|.+..|+++||++||||+++.++...+++|++.+|+.++++||+.||+|
T Consensus 33 ~~~fgfafDIDGVL~RG~~~i~~~~~Al-r~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSHsP 111 (389)
T KOG1618|consen 33 PPTFGFAFDIDGVLFRGHRPIPGALKAL-RRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSHSP 111 (389)
T ss_pred CCceeEEEecccEEEecCCCCcchHHHH-HHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhcCh
Confidence 3568999999999999999999999999 999988788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcChhHHHHHHHCCCceeeCHHHHHhhcCCCcccccccc
Q psy17092 84 IKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVDSIRNAHPLLDCVDHRRR 136 (183)
Q Consensus 84 ~~~l~~~~~k~v~viG~~~~~~~l~~~G~~~~~t~~~l~~a~p~l~~~~~~~~ 136 (183)
.+.|.+++.++|+++|.+..+++++.+||+.++|.|++..++|.+||+...++
T Consensus 112 ~r~l~~~~~k~vLv~G~~~vr~vAegyGFk~Vvt~D~l~k~f~~ldP~t~~~~ 164 (389)
T KOG1618|consen 112 FRLLVEYHYKRVLVVGQGSVREVAEGYGFKNVVTVDELAKYFPLLDPFTDLSR 164 (389)
T ss_pred HHHHhhhhhceEEEecCCcHHHHhhccCccceeeHHHHHHhCCCcccccchhH
Confidence 99888888999999999999999999999999999999999999998777544
No 4
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.91 E-value=7.6e-24 Score=183.36 Aligned_cols=169 Identities=29% Similarity=0.472 Sum_probs=133.7
Q ss_pred EEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHHH-
Q psy17092 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIKM- 86 (183)
Q Consensus 8 ~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~~- 86 (183)
+|+||||||||+|+.++|+|.+++ +.|+...+++++|++|+|||+++++++++++|.+.+|+++++++|++++.++..
T Consensus 2 ~~ifD~DGvL~~g~~~i~ga~eal-~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~~~~~~l 80 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKPIAGASDAL-RRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSHSPYKSL 80 (321)
T ss_pred EEEEeCcCceECCccccHHHHHHH-HHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhhHHHHHH
Confidence 799999999999999999999999 999986234459999999999999999999996689999999999999987764
Q ss_pred HHhcCCCeEEEEcChhHHHHHHHCCCceeeCHHHHHhhcCCCcccccccc----------------c---cc-------C
Q psy17092 87 LHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVDSIRNAHPLLDCVDHRRR----------------V---SL-------F 140 (183)
Q Consensus 87 l~~~~~k~v~viG~~~~~~~l~~~G~~~~~t~~~l~~a~p~l~~~~~~~~----------------~---~~-------~ 140 (183)
++++ .+++|++|+++++++++.+||+.+++.+++.+.+|.++++...+. + .. .
T Consensus 81 l~~~-~~~v~viG~~~~~~~l~~~G~~~vv~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aVvv~~d~~~~ 159 (321)
T TIGR01456 81 VNKY-EKRILAVGTGSVRGVAEGYGFQNVVHQDEIVRYFRDIDPFSGMSDEQVREYSRDIPDLTTKRFDAVLVFNDPVDW 159 (321)
T ss_pred HHHc-CCceEEEeChHHHHHHHHcCCcccccHHHHHhcCCCCCcccccCHHHhhcccccccccCCCceeEEEEecCchHH
Confidence 4444 348999999999999999999999999999999998775432110 0 00 0
Q ss_pred cchhhhHHHHHhh-------------hhccccccCCCCCCCCccccccccc
Q psy17092 141 PRYCSRAQSLLSS-------------ELKITDRSLDHKAKIGRSEATTHTI 178 (183)
Q Consensus 141 ~~~~~~~~~~~~~-------------~l~~~~~~l~~~~~~~~~~~~~~~~ 178 (183)
-...+.+.+.+.. +|-.++.|+..|+..|.|...+|++
T Consensus 160 ~~~l~~~~~~l~~~g~~g~~~~~~~~~~i~~n~D~~~p~~~g~~~~g~Ga~ 210 (321)
T TIGR01456 160 AADIQIISDALNSEGLPGEKSGKPSIPIYFSNQDLLWANEYKLNRFGQGAF 210 (321)
T ss_pred hhhHHHHHHHHhCCCCcCCCCCCCCCCEEEeCCCEeeccCCCCceechHHH
Confidence 0112233344432 4777999999998888888888863
No 5
>KOG2882|consensus
Probab=99.91 E-value=7.9e-24 Score=180.16 Aligned_cols=151 Identities=24% Similarity=0.355 Sum_probs=124.5
Q ss_pred CCCCceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC-CCccceecc
Q psy17092 2 ILSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE-VEEDQVVMS 80 (183)
Q Consensus 2 ~~~~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~-~~~~~I~ts 80 (183)
+++.+++|+||||||||.|+.+|||+.|++ ++|++.| +.++|+||||.+++++|+++++ .+|+. +.+++|++|
T Consensus 18 ~l~~~DtfifDcDGVlW~g~~~ipGs~e~l-~~L~~~g----K~i~fvTNNStksr~~y~kK~~-~lG~~~v~e~~i~ss 91 (306)
T KOG2882|consen 18 LLDSFDTFIFDCDGVLWLGEKPIPGSPEAL-NLLKSLG----KQIIFVTNNSTKSREQYMKKFA-KLGFNSVKEENIFSS 91 (306)
T ss_pred HHhhcCEEEEcCCcceeecCCCCCChHHHH-HHHHHcC----CcEEEEeCCCcchHHHHHHHHH-HhCccccCcccccCh
Confidence 457889999999999999999999999999 9999988 6899999999999999999998 69999 999999999
Q ss_pred HHHH-HHHHh-c-CCCeEEEEcChhHHHHHHHC-----------------------------------CCceeeCHHHHH
Q psy17092 81 HTPI-KMLHK-Y-HTKHTLISGQGPMEEIAKRL-----------------------------------GFNKVVTVDSIR 122 (183)
Q Consensus 81 ~~a~-~~l~~-~-~~k~v~viG~~~~~~~l~~~-----------------------------------G~~~~~t~~~l~ 122 (183)
+.++ .|+++ . .+++||++|+.+++++|+.+ |||..++|.|+.
T Consensus 92 a~~~a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvvg~D~hfsy~KL~ 171 (306)
T KOG2882|consen 92 AYAIADYLKKRKPFGKKVYVIGEEGIREELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVVGYDEHFSYPKLM 171 (306)
T ss_pred HHHHHHHHHHhCcCCCeEEEecchhhhHHHHHcCceeecCCCCcccccccccchhhcCCCCCCCEEEEecccccCHHHHH
Confidence 8654 58854 3 57999999999999998754 457778999999
Q ss_pred hhcCCCc------------c-cc---c-----------------ccccccCcchhhhHHHHHhhhhccc
Q psy17092 123 NAHPLLD------------C-VD---H-----------------RRRVSLFPRYCSRAQSLLSSELKIT 158 (183)
Q Consensus 123 ~a~p~l~------------~-~~---~-----------------~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (183)
.|+.++. . .+ . .|+|++..++.....+.+.+++++.
T Consensus 172 kA~~yLqnP~clflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~ 240 (306)
T KOG2882|consen 172 KALNYLQNPGCLFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNID 240 (306)
T ss_pred HHHHHhCCCCcEEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCC
Confidence 9888772 1 11 0 5666666666666666676666664
No 6
>PRK10444 UMP phosphatase; Provisional
Probab=99.87 E-value=8.9e-22 Score=165.18 Aligned_cols=116 Identities=24% Similarity=0.417 Sum_probs=101.2
Q ss_pred ceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHH
Q psy17092 6 SFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIK 85 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~ 85 (183)
+++|+||+|||||++++++|+|.+++ ++|++.| +|++|+|||+.++..+++++|+ .+|+++++++|+||+.+++
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l-~~L~~~g----~~~~~~Tn~~~~~~~~~~~~l~-~~G~~~~~~~i~ts~~~~~ 74 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFL-HRILDKG----LPLVLLTNYPSQTGQDLANRFA-TAGVDVPDSVFYTSAMATA 74 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHH-HHHHHCC----CeEEEEeCCCCCCHHHHHHHHH-HcCCCCCHhhEecHHHHHH
Confidence 47899999999999999999999999 9999988 8999999999999999999998 6999999999999998775
Q ss_pred -HHHhcCCCeEEEEcChhHHHHHHHCCCc--------------eeeCHHHHHhhcCC
Q psy17092 86 -MLHKYHTKHTLISGQGPMEEIAKRLGFN--------------KVVTVDSIRNAHPL 127 (183)
Q Consensus 86 -~l~~~~~k~v~viG~~~~~~~l~~~G~~--------------~~~t~~~l~~a~p~ 127 (183)
+|+++.++++|++|++++.++++..|+. ..++|+++..|+.+
T Consensus 75 ~~L~~~~~~~v~~~g~~~l~~~l~~~g~~~~~~~~~~Vvvg~~~~~~~~~l~~a~~~ 131 (248)
T PRK10444 75 DFLRRQEGKKAYVIGEGALIHELYKAGFTITDINPDFVIVGETRSYNWDMMHKAAYF 131 (248)
T ss_pred HHHHhCCCCEEEEEcCHHHHHHHHHCcCEecCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 7777667889999999999999877764 34566666666543
No 7
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.86 E-value=6.5e-21 Score=159.55 Aligned_cols=157 Identities=18% Similarity=0.264 Sum_probs=116.3
Q ss_pred ceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHH
Q psy17092 6 SFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIK 85 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~ 85 (183)
+++|+||+|||||++++++|+|.++| ++|++.| ++++|+|||++++.+++.++|. .+|+++.+++|++++.++.
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~~a~~~l-~~l~~~g----~~~~~~Tnn~~r~~~~~~~~l~-~~g~~~~~~~iit~~~~~~ 74 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIPEAETFV-HELQKRD----IPYLFVTNNSTRTPESVAEMLA-SFDIPATLETVFTASMATA 74 (249)
T ss_pred CCEEEEeCCCceEcCCeeCcCHHHHH-HHHHHCC----CeEEEEeCCCCCCHHHHHHHHH-HcCCCCChhhEeeHHHHHH
Confidence 57999999999999999999999999 9999988 8999999999999999999998 6999999999999998775
Q ss_pred -HHHhc-CCCeEEEEcChhHHHHHHHCCCceeeCHHHHHhhcCCCcccccccccccCcchhhhHHHHHhh--hhcccccc
Q psy17092 86 -MLHKY-HTKHTLISGQGPMEEIAKRLGFNKVVTVDSIRNAHPLLDCVDHRRRVSLFPRYCSRAQSLLSS--ELKITDRS 161 (183)
Q Consensus 86 -~l~~~-~~k~v~viG~~~~~~~l~~~G~~~~~t~~~l~~a~p~l~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 161 (183)
++++. ..++++++|+.++.++++.+|+.... .-+...-+.-. .+ ..-+....+...+++ ++-.+|.|
T Consensus 75 ~~l~~~~~~~~v~~lg~~~l~~~l~~~g~~~~~-------~~~~~Vvvg~~-~~-~~y~~l~~a~~~l~~g~~~i~tN~D 145 (249)
T TIGR01457 75 DYMNDLKLEKTVYVIGEEGLKEAIKEAGYVEDK-------EKPDYVVVGLD-RQ-IDYEKFATATLAIRKGAHFIGTNGD 145 (249)
T ss_pred HHHHhcCCCCEEEEEcChhHHHHHHHcCCEecC-------CCCCEEEEeCC-CC-CCHHHHHHHHHHHHCCCeEEEECCC
Confidence 67653 56889999999999999999985320 01111111111 11 111222233343433 57778888
Q ss_pred CCCCCCCCccccccccc
Q psy17092 162 LDHKAKIGRSEATTHTI 178 (183)
Q Consensus 162 l~~~~~~~~~~~~~~~~ 178 (183)
+..+...| .++++|++
T Consensus 146 ~~~~~~~~-~~~~~G~~ 161 (249)
T TIGR01457 146 LAIPTERG-LLPGNGSL 161 (249)
T ss_pred CCCCCCCC-CCCCcHHH
Confidence 88876555 45666654
No 8
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.83 E-value=7.2e-20 Score=155.24 Aligned_cols=109 Identities=26% Similarity=0.396 Sum_probs=97.8
Q ss_pred ceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHH
Q psy17092 6 SFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIK 85 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~ 85 (183)
+++|+||||||||++++++||+.++| ++|++.| ++++|+|||+.+++.++..+|. .+|++..+++|++|+.++.
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l-~~L~~~g----~~~~~~Tnns~~~~~~~~~~l~-~~G~~~~~~~i~ts~~~~~ 75 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELL-DRLARAG----KAALFVTNNSTKSRAEYALKFA-RLGFNGLAEQLFSSALCAA 75 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHH-HHHHHCC----CeEEEEeCCCCCCHHHHHHHHH-HcCCCCChhhEecHHHHHH
Confidence 68999999999999999999999999 9999887 8999999999999999999998 6999999999999998875
Q ss_pred -HHHh--cCCCeEEEEcChhHHHHHHHCCCceeeCHHH
Q psy17092 86 -MLHK--YHTKHTLISGQGPMEEIAKRLGFNKVVTVDS 120 (183)
Q Consensus 86 -~l~~--~~~k~v~viG~~~~~~~l~~~G~~~~~t~~~ 120 (183)
+|++ +.++++|++|++++.++++.+|++..-+.++
T Consensus 76 ~~l~~~~~~~~~v~~iG~~~~~~~l~~~g~~~~~~~~~ 113 (279)
T TIGR01452 76 RLLRQPPDAPKAVYVIGEEGLRAELDAAGIRLAGDPSA 113 (279)
T ss_pred HHHHhhCcCCCEEEEEcCHHHHHHHHHCCCEEecCccc
Confidence 6765 3568899999999999999999987655444
No 9
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.83 E-value=8.4e-20 Score=151.63 Aligned_cols=100 Identities=36% Similarity=0.672 Sum_probs=91.7
Q ss_pred EEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHH-HH
Q psy17092 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIK-ML 87 (183)
Q Consensus 9 iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~-~l 87 (183)
|+||+|||||++++++|+|.++| +.+++.| ++++|+|||+++++.+++++|.+.+|+++++++|++|+.++. ++
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i-~~l~~~g----~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l 75 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEAL-NRLRAKG----KPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLL 75 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHH-HHHHHCC----CeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHH
Confidence 68999999999999999999999 9999877 899999999999999999999955899999999999998876 67
Q ss_pred Hh-cCCCeEEEEcChhHHHHHHHCCCc
Q psy17092 88 HK-YHTKHTLISGQGPMEEIAKRLGFN 113 (183)
Q Consensus 88 ~~-~~~k~v~viG~~~~~~~l~~~G~~ 113 (183)
++ ++++++|++|++++.++++.+|++
T Consensus 76 ~~~~~~~~v~v~G~~~~~~~l~~~g~~ 102 (236)
T TIGR01460 76 RQRFEGEKVYVIGVGELRESLEGLGFR 102 (236)
T ss_pred HHhCCCCEEEEECCHHHHHHHHHcCCc
Confidence 64 456789999999999999999986
No 10
>PLN02645 phosphoglycolate phosphatase
Probab=99.83 E-value=4.1e-20 Score=159.33 Aligned_cols=110 Identities=27% Similarity=0.435 Sum_probs=97.6
Q ss_pred CCCceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH
Q psy17092 3 LSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT 82 (183)
Q Consensus 3 ~~~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~ 82 (183)
++.+++|+||+|||||+++.++|||.++| ++|+++| ++++|+|||+.+++++++++|. .+|+++.+++|++|+.
T Consensus 25 ~~~~~~~~~D~DGtl~~~~~~~~ga~e~l-~~lr~~g----~~~~~~TN~~~~~~~~~~~~l~-~lGi~~~~~~I~ts~~ 98 (311)
T PLN02645 25 IDSVETFIFDCDGVIWKGDKLIEGVPETL-DMLRSMG----KKLVFVTNNSTKSRAQYGKKFE-SLGLNVTEEEIFSSSF 98 (311)
T ss_pred HHhCCEEEEeCcCCeEeCCccCcCHHHHH-HHHHHCC----CEEEEEeCCCCCCHHHHHHHHH-HCCCCCChhhEeehHH
Confidence 45789999999999999999999999999 9999987 8999999999999999999998 6999999999999998
Q ss_pred HHH-HHHh--c-CCCeEEEEcChhHHHHHHHCCCceeeCH
Q psy17092 83 PIK-MLHK--Y-HTKHTLISGQGPMEEIAKRLGFNKVVTV 118 (183)
Q Consensus 83 a~~-~l~~--~-~~k~v~viG~~~~~~~l~~~G~~~~~t~ 118 (183)
++. +++. + ++++||++|+.++.++++.+|++..-.+
T Consensus 99 ~~~~~l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~~~g~ 138 (311)
T PLN02645 99 AAAAYLKSINFPKDKKVYVIGEEGILEELELAGFQYLGGP 138 (311)
T ss_pred HHHHHHHhhccCCCCEEEEEcCHHHHHHHHHCCCEEecCc
Confidence 776 5553 2 3578999999999999999999765433
No 11
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.77 E-value=1.4e-18 Score=146.25 Aligned_cols=116 Identities=23% Similarity=0.383 Sum_probs=94.8
Q ss_pred ceEEEEecCCeeeeCCc----cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH
Q psy17092 6 SFGLIFDIDGVLVRGKQ----VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH 81 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~----~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~ 81 (183)
.++|+||+|||||++++ ++|+|.++| ++|++.| ++++|+|||++++++++.++|. .+|+++++++|+||+
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al-~~l~~~G----~~~~~~Tn~~~~~~~~~~~~l~-~~g~~~~~~~i~ts~ 74 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAV-KRLRGAS----VKVRFVTNTTKESKQDLLERLQ-RLGFDISEDEVFTPA 74 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHH-HHHHHCC----CeEEEEECCCCCCHHHHHHHHH-HcCCCCCHHHeEcHH
Confidence 37899999999999988 999999999 9999988 8999999999999999999998 699999999999999
Q ss_pred HHHH-HHHhcCCCeEEEEcChhHHHHHHH----------CCCc-eeeCHHHHHhhcCCC
Q psy17092 82 TPIK-MLHKYHTKHTLISGQGPMEEIAKR----------LGFN-KVVTVDSIRNAHPLL 128 (183)
Q Consensus 82 ~a~~-~l~~~~~k~v~viG~~~~~~~l~~----------~G~~-~~~t~~~l~~a~p~l 128 (183)
.++. +|++. +.++|++|++++.+.+.. +|++ ..++|+++..++..+
T Consensus 75 ~~~~~~l~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~Vv~g~~~~~~~y~~l~~a~~~L 132 (257)
T TIGR01458 75 PAARQLLEEK-QLRPMLLVDDRVLPDFDGIDTSDPNCVVMGLAPEHFSYQILNQAFRLL 132 (257)
T ss_pred HHHHHHHHhc-CCCeEEEECccHHHHhccCCCCCCCEEEEecccCccCHHHHHHHHHHH
Confidence 8776 67654 356899898877777642 2332 246676666654444
No 12
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.55 E-value=3.3e-14 Score=118.11 Aligned_cols=105 Identities=19% Similarity=0.281 Sum_probs=83.1
Q ss_pred CCCCCceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC-Cccceec
Q psy17092 1 EILSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV-EEDQVVM 79 (183)
Q Consensus 1 ~~~~~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~-~~~~I~t 79 (183)
++++.+++|+||+|||||++.+++||+.++| ++|+++| +++.|+||+ +++..++.++|. .+|++. ..+.|++
T Consensus 3 ~~~~~~~~~~~D~dG~l~~~~~~~pga~e~L-~~L~~~G----~~~~ivTN~-~~~~~~~~~~L~-~~gl~~~~~~~Ii~ 75 (242)
T TIGR01459 3 DLINDYDVFLLDLWGVIIDGNHTYPGAVQNL-NKIIAQG----KPVYFVSNS-PRNIFSLHKTLK-SLGINADLPEMIIS 75 (242)
T ss_pred hhhhcCCEEEEecccccccCCccCccHHHHH-HHHHHCC----CEEEEEeCC-CCChHHHHHHHH-HCCCCccccceEEc
Confidence 4678899999999999999999999999999 9999887 899999995 567777778887 699998 7899999
Q ss_pred cHHHHH-HHH----hc--CCCeEEEEcChhH-HHHHHHCCC
Q psy17092 80 SHTPIK-MLH----KY--HTKHTLISGQGPM-EEIAKRLGF 112 (183)
Q Consensus 80 s~~a~~-~l~----~~--~~k~v~viG~~~~-~~~l~~~G~ 112 (183)
+...+. ++. ++ ..+.++++|.... .+.+..+|+
T Consensus 76 s~~~~~~~l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 76 SGEIAVQMILESKKRFDIRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred cHHHHHHHHHhhhhhccCCCceEEEeCCcccchhhhcCCCc
Confidence 986543 332 22 3467999998543 444544443
No 13
>KOG3040|consensus
Probab=99.46 E-value=2.5e-13 Score=111.25 Aligned_cols=118 Identities=21% Similarity=0.356 Sum_probs=94.6
Q ss_pred CCceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHH
Q psy17092 4 SPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTP 83 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a 83 (183)
...+++++|+-|||+....++|||.|++ ++|+..+ ..+-|+||.+..|...+.++|. .+|+++++++|++|..+
T Consensus 5 ~~v~gvLlDlSGtLh~e~~avpga~eAl-~rLr~~~----~kVkFvTNttk~Sk~~l~~rL~-rlgf~v~eeei~tsl~a 78 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIEDAAVPGAVEAL-KRLRDQH----VKVKFVTNTTKESKRNLHERLQ-RLGFDVSEEEIFTSLPA 78 (262)
T ss_pred cccceEEEeccceEecccccCCCHHHHH-HHHHhcC----ceEEEEecCcchhHHHHHHHHH-HhCCCccHHHhcCccHH
Confidence 4578999999999999999999999999 9999766 7889999999999999999998 69999999999999988
Q ss_pred HH-HHHhcCCCeEEEEcChhHHHHHHH----------CCC-ceeeCHHHHHhhcCCC
Q psy17092 84 IK-MLHKYHTKHTLISGQGPMEEIAKR----------LGF-NKVVTVDSIRNAHPLL 128 (183)
Q Consensus 84 ~~-~l~~~~~k~v~viG~~~~~~~l~~----------~G~-~~~~t~~~l~~a~p~l 128 (183)
++ ++++.+-+..|++ .+...+.+.. .|. ...++|+.+++||+.|
T Consensus 79 a~~~~~~~~lrP~l~v-~d~a~~dF~gidTs~pn~VViglape~F~y~~ln~AFrvL 134 (262)
T KOG3040|consen 79 ARQYLEENQLRPYLIV-DDDALEDFDGIDTSDPNCVVIGLAPEGFSYQRLNRAFRVL 134 (262)
T ss_pred HHHHHHhcCCCceEEE-cccchhhCCCccCCCCCeEEEecCcccccHHHHHHHHHHH
Confidence 87 5655433444444 4444444421 222 2358999999999877
No 14
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.92 E-value=1.6e-08 Score=75.92 Aligned_cols=102 Identities=25% Similarity=0.417 Sum_probs=69.1
Q ss_pred eEEEEecCCeeeeC---------CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC-----HHHHHHHHHHHhCCCC
Q psy17092 7 FGLIFDIDGVLVRG---------KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL-----AADKAKQLTEWLGVEV 72 (183)
Q Consensus 7 ~~iifDiDGVL~~g---------~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~-----~~~~~~~L~~~lG~~~ 72 (183)
++++||+||||+++ .+++|++.++| +.|++.| ++++++||+++.. .+.+...+. .+|+..
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l-~~L~~~g----~~l~i~Sn~~~~~~~~~~~~~~~~~l~-~~~l~~ 74 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDAL-AELKEAG----YKVVIVTNQSGIGRGKFSSGRVARRLE-ELGVPI 74 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHH-HHHHHCC----CEEEEEECCccccccHHHHHHHHHHHH-HCCCCE
Confidence 58999999999964 47899999999 9999877 8999999987443 233444454 688863
Q ss_pred CccceeccH-------HHHH-HHHhc---CCCeEEEEcCh--hHHHHHHHCCCceee
Q psy17092 73 EEDQVVMSH-------TPIK-MLHKY---HTKHTLISGQG--PMEEIAKRLGFNKVV 116 (183)
Q Consensus 73 ~~~~I~ts~-------~a~~-~l~~~---~~k~v~viG~~--~~~~~l~~~G~~~~~ 116 (183)
. .++.+. .... .++++ ....++++|.. .-...++.+|+..+.
T Consensus 75 ~--~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~ 129 (132)
T TIGR01662 75 D--VLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFIL 129 (132)
T ss_pred E--EEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEE
Confidence 2 222111 1222 23333 34678889983 455567889987653
No 15
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.68 E-value=2e-07 Score=73.80 Aligned_cols=105 Identities=24% Similarity=0.398 Sum_probs=68.8
Q ss_pred CCceEEEEecCCeeeeCCc-------------cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC-----HH---HHHH
Q psy17092 4 SPSFGLIFDIDGVLVRGKQ-------------VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL-----AA---DKAK 62 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~-------------~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~-----~~---~~~~ 62 (183)
+..+.++||+||||+.... ++||+.++| +.|++.| +++.++||++... .+ ..++
T Consensus 11 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L-~~Lk~~G----~~l~I~TN~~~~~~~~~~~~~~~~~i~ 85 (166)
T TIGR01664 11 PQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKL-QELDDEG----YKIVIFTNQSGIGRGKLSAESFKNKIE 85 (166)
T ss_pred CcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHH-HHHHHCC----CEEEEEeCCcccccCcccHHHHHHHHH
Confidence 3468999999999997532 469999999 9999887 8999999987641 11 1233
Q ss_pred HHHHHhCCCCCccceeccH-----HH----HH-HHHhcC----CCeEEEEcChh---------HHHHHHHCCCcee
Q psy17092 63 QLTEWLGVEVEEDQVVMSH-----TP----IK-MLHKYH----TKHTLISGQGP---------MEEIAKRLGFNKV 115 (183)
Q Consensus 63 ~L~~~lG~~~~~~~I~ts~-----~a----~~-~l~~~~----~k~v~viG~~~---------~~~~l~~~G~~~~ 115 (183)
.+-+.+|+.. +.++.++ .| .. .+++++ ...+++||... -.+.++.+|++..
T Consensus 86 ~~l~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~ 159 (166)
T TIGR01664 86 AFLEKLKVPI--QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFK 159 (166)
T ss_pred HHHHHcCCCE--EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcC
Confidence 3334788763 3333321 11 12 223333 35688899753 5566778898753
No 16
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.56 E-value=2e-07 Score=67.71 Aligned_cols=64 Identities=28% Similarity=0.549 Sum_probs=49.0
Q ss_pred EEEEecCCeeeeCC---------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCcccee
Q psy17092 8 GLIFDIDGVLVRGK---------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVV 78 (183)
Q Consensus 8 ~iifDiDGVL~~g~---------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ 78 (183)
+++||+||||+..+ .+.|++.++| +.|++.| .+++++||+. +..+...+. .+|+....+.++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~g----~~i~ivS~~~---~~~~~~~~~-~~~~~~~~~~i~ 71 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEAL-KELKEKG----IKLALATNKS---RREVLELLE-ELGLDDYFDPVI 71 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHH-HHHHHCC----CeEEEEeCch---HHHHHHHHH-HcCCchhhhhee
Confidence 47999999999988 7899999999 9999877 7999999876 333444454 588754445555
Q ss_pred cc
Q psy17092 79 MS 80 (183)
Q Consensus 79 ts 80 (183)
.+
T Consensus 72 ~~ 73 (139)
T cd01427 72 TS 73 (139)
T ss_pred cc
Confidence 43
No 17
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.55 E-value=7.5e-07 Score=70.51 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCceEEEEecCCeeeeC--CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH
Q psy17092 4 SPSFGLIFDIDGVLVRG--KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH 81 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g--~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~ 81 (183)
..++++++|+||||+.. ..++|++.++| +.|++.| ++++++||++.. ..+..+.+.+|+....... -+.
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L-~~Lk~~g----~~l~I~Sn~~~~---~~~~~~~~~~gl~~~~~~~-KP~ 93 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDHNEAYPALRDWI-EELKAAG----RKLLIVSNNAGE---QRAKAVEKALGIPVLPHAV-KPP 93 (170)
T ss_pred CCCCEEEEecCCccccCCCCCcChhHHHHH-HHHHHcC----CEEEEEeCCchH---HHHHHHHHHcCCEEEcCCC-CCC
Confidence 35689999999999953 46899999999 9999887 899999998742 2344554467775321111 111
Q ss_pred -HHHH-HHHhc--CCCeEEEEcChh--HHHHHHHCCCceee
Q psy17092 82 -TPIK-MLHKY--HTKHTLISGQGP--MEEIAKRLGFNKVV 116 (183)
Q Consensus 82 -~a~~-~l~~~--~~k~v~viG~~~--~~~~l~~~G~~~~~ 116 (183)
.... .++++ ....+++||... -...++.+|+..+.
T Consensus 94 p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~ 134 (170)
T TIGR01668 94 GCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTIL 134 (170)
T ss_pred hHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEE
Confidence 1222 33443 346799999764 45556789997654
No 18
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.53 E-value=1.1e-06 Score=71.00 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=55.1
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH-----H----HHH-HHHhc-
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH-----T----PIK-MLHKY- 90 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~-----~----a~~-~l~~~- 90 (183)
.++||+.++| +.|++.| +++.++||+.. ......|. .+|+.--.+.++++. . ... .++++
T Consensus 82 ~~~~g~~~~l-~~L~~~g----~~~~i~S~~~~---~~~~~~l~-~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~ 152 (214)
T PRK13288 82 TEYETVYETL-KTLKKQG----YKLGIVTTKMR---DTVEMGLK-LTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLG 152 (214)
T ss_pred ccCcCHHHHH-HHHHHCC----CeEEEEeCCCH---HHHHHHHH-HcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcC
Confidence 3578899988 9998877 89999999763 33344555 688864445555531 1 112 23343
Q ss_pred -CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 -HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 -~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
....+++||.. .-.+.++.+|+..+
T Consensus 153 ~~~~~~~~iGDs~~Di~aa~~aG~~~i 179 (214)
T PRK13288 153 AKPEEALMVGDNHHDILAGKNAGTKTA 179 (214)
T ss_pred CCHHHEEEECCCHHHHHHHHHCCCeEE
Confidence 34678889964 44555678998765
No 19
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.51 E-value=1.4e-06 Score=67.12 Aligned_cols=102 Identities=25% Similarity=0.322 Sum_probs=66.0
Q ss_pred eEEEEecCCeeeeCCc-----------cCccHHHHHHHHHHhcCCCccccEEEEeCCCCC--C----------HHHHHHH
Q psy17092 7 FGLIFDIDGVLVRGKQ-----------VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS--L----------AADKAKQ 63 (183)
Q Consensus 7 ~~iifDiDGVL~~g~~-----------~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~--~----------~~~~~~~ 63 (183)
++++||+||||..+.. +.||+.++| +.|++.| ++++++||.... . .......
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l-~~Lk~~g----~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~ 75 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPAL-LTLRAAG----YTVVVVTNQSGIGRGYFSAEAFRAPNGRVLEL 75 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHH-HHHHHCC----CEEEEEeCCCcccCCcCCHHHHHHHHHHHHHH
Confidence 4799999999998774 799999999 9999888 899999997641 1 1222333
Q ss_pred HHHHhCCCCCcccee------------ccH-HHHH-HHHhc--CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 64 LTEWLGVEVEEDQVV------------MSH-TPIK-MLHKY--HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 64 L~~~lG~~~~~~~I~------------ts~-~a~~-~l~~~--~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
+. .+|+... ..++ .+. .... .++++ ....+++||.. .-.+.++.+|++.+
T Consensus 76 l~-~~~l~~~-~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v 142 (147)
T TIGR01656 76 LR-QLGVAVD-GVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAV 142 (147)
T ss_pred HH-hCCCcee-EEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEE
Confidence 44 6887621 1111 111 1112 23343 33568889964 44455678998765
No 20
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.47 E-value=1.1e-06 Score=70.30 Aligned_cols=106 Identities=21% Similarity=0.309 Sum_probs=73.3
Q ss_pred CCceEEEEecCCeee--eCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC---HHHHHHHHHHHhCCCCCcccee
Q psy17092 4 SPSFGLIFDIDGVLV--RGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL---AADKAKQLTEWLGVEVEEDQVV 78 (183)
Q Consensus 4 ~~~~~iifDiDGVL~--~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~---~~~~~~~L~~~lG~~~~~~~I~ 78 (183)
..+++++||.|.||. +..++.|...+++ +.+++.+++ -.++++|||+|.. ....++.+++.+|+++-....-
T Consensus 39 ~Gik~li~DkDNTL~~~~~~~i~~~~~~~~-~~l~~~~~~--~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~k 115 (168)
T PF09419_consen 39 KGIKALIFDKDNTLTPPYEDEIPPEYAEWL-NELKKQFGK--DRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAK 115 (168)
T ss_pred cCceEEEEcCCCCCCCCCcCcCCHHHHHHH-HHHHHHCCC--CeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCC
Confidence 468999999999995 6677888899999 999987631 2599999997654 2455788888999884211111
Q ss_pred ccH---HHHHHHHhc----CCCeEEEEcChhHHHHH--HHCCC
Q psy17092 79 MSH---TPIKMLHKY----HTKHTLISGQGPMEEIA--KRLGF 112 (183)
Q Consensus 79 ts~---~a~~~l~~~----~~k~v~viG~~~~~~~l--~~~G~ 112 (183)
-+. ...+++... ..+.+.+||..-+.+++ ...|.
T Consensus 116 KP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~ 158 (168)
T PF09419_consen 116 KPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGS 158 (168)
T ss_pred CCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCc
Confidence 111 122344322 35679999999999986 23553
No 21
>PRK06769 hypothetical protein; Validated
Probab=98.41 E-value=3.2e-06 Score=67.05 Aligned_cols=103 Identities=16% Similarity=0.229 Sum_probs=67.8
Q ss_pred CCceEEEEecCCeeee--------CCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCC-----CHHHHHHHHHHHhCC
Q psy17092 4 SPSFGLIFDIDGVLVR--------GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS-----LAADKAKQLTEWLGV 70 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~--------g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~-----~~~~~~~~L~~~lG~ 70 (183)
.+|++++||.||||.- .-.++||+.++| ++|++.| +++.++||++.. ....+...+. .+|+
T Consensus 2 ~~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L-~~Lk~~G----~~l~I~Tn~~~~~~~~~~~~~~~~~l~-~~g~ 75 (173)
T PRK06769 2 TNIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASL-QKLKANH----IKIFSFTNQPGIADGIATIADFVQELK-GFGF 75 (173)
T ss_pred CCCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHH-HHHHHCC----CEEEEEECCchhcCCcCCHHHHHHHHH-hCCc
Confidence 4689999999999932 124799999999 9999887 899999998742 2223455565 5777
Q ss_pred CCCccceec----------cHHH----HH-HHHhc--CCCeEEEEcCh-hHHHHHHHCCCceee
Q psy17092 71 EVEEDQVVM----------SHTP----IK-MLHKY--HTKHTLISGQG-PMEEIAKRLGFNKVV 116 (183)
Q Consensus 71 ~~~~~~I~t----------s~~a----~~-~l~~~--~~k~v~viG~~-~~~~~l~~~G~~~~~ 116 (183)
. .++. ...| .. .++++ ....+++||.. .-.+.++.+|++.+.
T Consensus 76 ~----~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~ 135 (173)
T PRK06769 76 D----DIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTIL 135 (173)
T ss_pred C----EEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEE
Confidence 5 2221 1121 11 23344 34678999964 334446789988763
No 22
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.38 E-value=7.3e-06 Score=64.86 Aligned_cols=43 Identities=28% Similarity=0.466 Sum_probs=37.7
Q ss_pred eEEEEecCCeeeeCC---------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCC
Q psy17092 7 FGLIFDIDGVLVRGK---------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGN 54 (183)
Q Consensus 7 ~~iifDiDGVL~~g~---------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~ 54 (183)
++++||.||||..+. .++||+.++| +.|+++| +++.++||+++
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L-~~Lk~~G----~~l~i~TN~~~ 53 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDAL-RELKKMG----YALVLVTNQSG 53 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHH-HHHHHCC----CEEEEEeCCcc
Confidence 689999999999532 3589999999 9999887 89999999986
No 23
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.38 E-value=4.4e-06 Score=70.05 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=67.3
Q ss_pred EEEEecCCeeeeCCc---------------------------------cCcc--HHHHHHHHHHhcCCCccccEEEEeCC
Q psy17092 8 GLIFDIDGVLVRGKQ---------------------------------VLPG--VQDTFMNKLTNSGGRFVVPTVFVTNA 52 (183)
Q Consensus 8 ~iifDiDGVL~~g~~---------------------------------~ipg--A~e~l~~~l~~~ggk~~i~~~~lTNn 52 (183)
+|+|||||||+++.. .+|+ |.++| ++++++| ++++++||.
T Consensus 65 aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL-~~l~~~G----~~i~iVTnr 139 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLI-DMHQRRG----DAIFFVTGR 139 (237)
T ss_pred EEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHH-HHHHHCC----CEEEEEeCC
Confidence 899999999997543 1333 88888 9999887 899999998
Q ss_pred CCCCHHHHHHHHHHHhCCCCCccceeccHH-------HHHHHHhcCCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 53 GNSLAADKAKQLTEWLGVEVEEDQVVMSHT-------PIKMLHKYHTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 53 s~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-------a~~~l~~~~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
.....+..++.+.+.+|++-..+.++++.. +...+++++ .++.+|.. .....++.+|++.+
T Consensus 140 ~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~--i~i~vGDs~~DI~aAk~AGi~~I 208 (237)
T TIGR01672 140 TPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKN--IRIHYGDSDNDITAAKEAGARGI 208 (237)
T ss_pred CCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCC--CeEEEeCCHHHHHHHHHCCCCEE
Confidence 654345566777767999743334444321 223344432 36778864 44456778998754
No 24
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.36 E-value=8e-06 Score=64.45 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=69.9
Q ss_pred eEEEEecCCeeeeCC------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC-----------HHHHHHH
Q psy17092 7 FGLIFDIDGVLVRGK------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL-----------AADKAKQ 63 (183)
Q Consensus 7 ~~iifDiDGVL~~g~------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~-----------~~~~~~~ 63 (183)
+.++||.||||+... +++||+.++| ++|+++| ++++++||.++.. ....+.+
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L-~~L~~~g----~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~ 76 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPAL-LKLKKAG----YKFVMVTNQDGLGTPSFPQADFDGPHNLMLQ 76 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHH-HHHHHCC----CeEEEEeCCccccCCcCCHHHHHHHHHHHHH
Confidence 679999999999732 4789999999 9999887 8999999987542 1233444
Q ss_pred HHHHhCCCCCcccee-c----cH-----HH----HH-HHHhcC--CCeEEEEcCh-hHHHHHHHCCCcee-eCHHH
Q psy17092 64 LTEWLGVEVEEDQVV-M----SH-----TP----IK-MLHKYH--TKHTLISGQG-PMEEIAKRLGFNKV-VTVDS 120 (183)
Q Consensus 64 L~~~lG~~~~~~~I~-t----s~-----~a----~~-~l~~~~--~k~v~viG~~-~~~~~l~~~G~~~~-~t~~~ 120 (183)
+-+.+|+.+ +.++ + +. .| .. .+++++ ...+++||.. .-.+.++.+|++.+ ++..+
T Consensus 77 ~l~~~gl~f--d~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~~ 150 (161)
T TIGR01261 77 IFRSQGIIF--DDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEEE 150 (161)
T ss_pred HHHHCCCce--eEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChhh
Confidence 444788873 3343 2 11 11 12 223443 3568999965 33555788998764 34443
No 25
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=98.36 E-value=1.7e-06 Score=68.90 Aligned_cols=99 Identities=22% Similarity=0.420 Sum_probs=74.6
Q ss_pred CceEEEEecCCeee--eCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH
Q psy17092 5 PSFGLIFDIDGVLV--RGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT 82 (183)
Q Consensus 5 ~~~~iifDiDGVL~--~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~ 82 (183)
.++|+++|+|.||+ +....-|...+.+ ..+++.| +.++++|||+.+ .++...+.+|++ -|+.+..
T Consensus 27 Gikgvi~DlDNTLv~wd~~~~tpe~~~W~-~e~k~~g----i~v~vvSNn~e~----RV~~~~~~l~v~----fi~~A~K 93 (175)
T COG2179 27 GIKGVILDLDNTLVPWDNPDATPELRAWL-AELKEAG----IKVVVVSNNKES----RVARAAEKLGVP----FIYRAKK 93 (175)
T ss_pred CCcEEEEeccCceecccCCCCCHHHHHHH-HHHHhcC----CEEEEEeCCCHH----HHHhhhhhcCCc----eeecccC
Confidence 57999999999998 5666788899988 9999988 899999996533 345555678888 4666655
Q ss_pred HHH-----HHHh--cCCCeEEEEcChhHHHHHH--HCCCceee
Q psy17092 83 PIK-----MLHK--YHTKHTLISGQGPMEEIAK--RLGFNKVV 116 (183)
Q Consensus 83 a~~-----~l~~--~~~k~v~viG~~~~~~~l~--~~G~~~~~ 116 (183)
|.. .+++ ++.+.|.+||.+-+.+++. ..|+.+++
T Consensus 94 P~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIl 136 (175)
T COG2179 94 PFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTIL 136 (175)
T ss_pred ccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEE
Confidence 432 3333 4668899999999999973 46777654
No 26
>PRK11587 putative phosphatase; Provisional
Probab=98.35 E-value=4.1e-06 Score=68.12 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=51.8
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-------HHHH---HHhc--
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-------PIKM---LHKY-- 90 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-------a~~~---l~~~-- 90 (183)
++||+.++| +.|+++| +++.++||++.... ...+. .+|+.. .+.++++.. +..+ +.++
T Consensus 84 ~~pg~~e~L-~~L~~~g----~~~~ivTn~~~~~~---~~~l~-~~~l~~-~~~i~~~~~~~~~KP~p~~~~~~~~~~g~ 153 (218)
T PRK11587 84 ALPGAIALL-NHLNKLG----IPWAIVTSGSVPVA---SARHK-AAGLPA-PEVFVTAERVKRGKPEPDAYLLGAQLLGL 153 (218)
T ss_pred eCcCHHHHH-HHHHHcC----CcEEEEcCCCchHH---HHHHH-hcCCCC-ccEEEEHHHhcCCCCCcHHHHHHHHHcCC
Confidence 367888888 8888776 89999999865422 23444 577753 345555432 1112 2333
Q ss_pred CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 ~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
....++++|.. .-.+.++.+|+..+
T Consensus 154 ~p~~~l~igDs~~di~aA~~aG~~~i 179 (218)
T PRK11587 154 APQECVVVEDAPAGVLSGLAAGCHVI 179 (218)
T ss_pred CcccEEEEecchhhhHHHHHCCCEEE
Confidence 34678888854 44556778998754
No 27
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.35 E-value=4.6e-07 Score=68.60 Aligned_cols=44 Identities=18% Similarity=0.407 Sum_probs=37.4
Q ss_pred eEEEEecCCeeeeCC-------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCC
Q psy17092 7 FGLIFDIDGVLVRGK-------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS 55 (183)
Q Consensus 7 ~~iifDiDGVL~~g~-------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~ 55 (183)
++++||+|||||.+. +++||+.++| +.|+++| +++.++||++..
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L-~~Lk~~g----~~l~i~Sn~~~~ 57 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKL-QTLKKNG----FLLALASYNDDP 57 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHH-HHHHHCC----eEEEEEeCCCCH
Confidence 579999999999883 2589999999 9999877 899999997433
No 28
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.34 E-value=4.7e-06 Score=71.06 Aligned_cols=90 Identities=19% Similarity=0.401 Sum_probs=66.1
Q ss_pred CceEEEEecCCeeeeCC---------------------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCH
Q psy17092 5 PSFGLIFDIDGVLVRGK---------------------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLA 57 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~---------------------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~ 57 (183)
...+|+||||+|+.+.. .++||+.+++ +.+++.| ++++|+||++...+
T Consensus 74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L-~~L~~~G----~~v~iVTnR~~~~~ 148 (266)
T TIGR01533 74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFL-NYANSKG----VKIFYVSNRSEKEK 148 (266)
T ss_pred CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHH-HHHHHCC----CeEEEEeCCCcchH
Confidence 45699999999996321 4689999999 9999887 89999999998888
Q ss_pred HHHHHHHHHHhCCCC-CccceeccH----HHHH--HHHhcCCCeEEEEcCh
Q psy17092 58 ADKAKQLTEWLGVEV-EEDQVVMSH----TPIK--MLHKYHTKHTLISGQG 101 (183)
Q Consensus 58 ~~~~~~L~~~lG~~~-~~~~I~ts~----~a~~--~l~~~~~k~v~viG~~ 101 (183)
+.....|. .+|++. ..+.+++.. .+.+ .+.+ .-+.++.+|..
T Consensus 149 ~~T~~~Lk-k~Gi~~~~~d~lllr~~~~~K~~rr~~I~~-~y~Ivl~vGD~ 197 (266)
T TIGR01533 149 AATLKNLK-RFGFPQADEEHLLLKKDKSSKESRRQKVQK-DYEIVLLFGDN 197 (266)
T ss_pred HHHHHHHH-HcCcCCCCcceEEeCCCCCCcHHHHHHHHh-cCCEEEEECCC
Confidence 87778887 699975 456666531 2222 3322 22458888865
No 29
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.34 E-value=1.2e-05 Score=63.75 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=65.4
Q ss_pred CceEEEEecCCeeeeCC----------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCC-----CHH------HHH-H
Q psy17092 5 PSFGLIFDIDGVLVRGK----------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS-----LAA------DKA-K 62 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~----------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~-----~~~------~~~-~ 62 (183)
++|+++||.||||.... .++||+.++| ++|++.| +++.++||+++. ... +.. .
T Consensus 2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L-~~Lk~~g----~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~ 76 (181)
T PRK08942 2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAI-ARLKQAG----YRVVVATNQSGIARGLFTEAQLNALHEKMDW 76 (181)
T ss_pred CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHH-HHHHHCC----CEEEEEeCCccccCCcCCHHHHHHHHHHHHH
Confidence 57999999999997432 4799999999 9999887 899999998742 211 112 2
Q ss_pred HHHHHhCCCCCccceecc----------HH--HH--H-HHHhc--CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 63 QLTEWLGVEVEEDQVVMS----------HT--PI--K-MLHKY--HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 63 ~L~~~lG~~~~~~~I~ts----------~~--a~--~-~l~~~--~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
.+. .+|+. .+.++.+ .. +. . .++++ ....+++||.. .-...++.+|+..+
T Consensus 77 ~l~-~~g~~--f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i 144 (181)
T PRK08942 77 SLA-DRGGR--LDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPV 144 (181)
T ss_pred HHH-HcCCc--cceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEE
Confidence 343 46663 2333321 11 11 1 22333 34678889964 33444678998654
No 30
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.31 E-value=1.4e-06 Score=72.08 Aligned_cols=55 Identities=27% Similarity=0.397 Sum_probs=45.6
Q ss_pred EEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 8 ~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
.|+|||||||++.+..++++.++| ++|++.| +++++.| +|+..++...+. .+|+.
T Consensus 1 li~~DlDGTLl~~~~~~~~~~~ai-~~l~~~G----~~~vi~T---gR~~~~~~~~~~-~lg~~ 55 (225)
T TIGR02461 1 VIFTDLDGTLLPPGYEPGPAREAL-EELKDLG----FPIVFVS---SKTRAEQEYYRE-ELGVE 55 (225)
T ss_pred CEEEeCCCCCcCCCCCchHHHHHH-HHHHHCC----CEEEEEe---CCCHHHHHHHHH-HcCCC
Confidence 389999999999878889999999 9999987 8988885 677777666555 68874
No 31
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.29 E-value=7.8e-06 Score=65.96 Aligned_cols=83 Identities=29% Similarity=0.358 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-----H----HH-HHHhc--CC
Q psy17092 25 PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-----P----IK-MLHKY--HT 92 (183)
Q Consensus 25 pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-----a----~~-~l~~~--~~ 92 (183)
||+.++| +.|++.| +++.++||+..... ...+. .+|+.---+.++++.. | .. .++++ ..
T Consensus 97 ~g~~~~L-~~L~~~g----~~~~i~Tn~~~~~~---~~~l~-~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~ 167 (221)
T TIGR02253 97 PGVRDTL-MELRESG----YRLGIITDGLPVKQ---WEKLE-RLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKP 167 (221)
T ss_pred CCHHHHH-HHHHHCC----CEEEEEeCCchHHH---HHHHH-hCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCCh
Confidence 3444444 5555444 88999999764432 34455 5887644455665421 1 11 23343 34
Q ss_pred CeEEEEcCh--hHHHHHHHCCCceee
Q psy17092 93 KHTLISGQG--PMEEIAKRLGFNKVV 116 (183)
Q Consensus 93 k~v~viG~~--~~~~~l~~~G~~~~~ 116 (183)
..++++|.. .-...++.+|++.+.
T Consensus 168 ~~~~~igDs~~~di~~A~~aG~~~i~ 193 (221)
T TIGR02253 168 EEAVMVGDRLDKDIKGAKNLGMKTVW 193 (221)
T ss_pred hhEEEECCChHHHHHHHHHCCCEEEE
Confidence 678999975 356667899998764
No 32
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.26 E-value=2.8e-06 Score=73.32 Aligned_cols=71 Identities=15% Similarity=0.305 Sum_probs=54.6
Q ss_pred CCceEEEEecCCeeeeCCcc----CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceec
Q psy17092 4 SPSFGLIFDIDGVLVRGKQV----LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVM 79 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~~----ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~t 79 (183)
...+.|+||+||||...+.. -||+.++| ++|++.| +++.++||++.. .....|. .+|+.-.-+-|++
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL-~~LkekG----ikLaIaTS~~Re---~v~~~L~-~lGLd~YFdvIIs 194 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRDPRIYDSL-TELKKRG----CILVLWSYGDRD---HVVESMR-KVKLDRYFDIIIS 194 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCCHHHHHHH-HHHHHCC----CEEEEEECCCHH---HHHHHHH-HcCCCcccCEEEE
Confidence 34689999999999999876 49999999 9999988 899999986433 3345566 6999854456666
Q ss_pred cHHH
Q psy17092 80 SHTP 83 (183)
Q Consensus 80 s~~a 83 (183)
++..
T Consensus 195 ~Gdv 198 (301)
T TIGR01684 195 GGHK 198 (301)
T ss_pred CCcc
Confidence 6543
No 33
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.26 E-value=7.1e-06 Score=67.45 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=50.4
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH-----HH----HH-HHHhc--
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH-----TP----IK-MLHKY-- 90 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~-----~a----~~-~l~~~-- 90 (183)
++||+.+++ +.|++.| +++.++||++... ....+. .+|+.-.-+.++++. .| .. .++++
T Consensus 96 ~~pg~~~~L-~~L~~~g----~~l~i~Tn~~~~~---~~~~l~-~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~ 166 (229)
T PRK13226 96 LFDGVEGML-QRLECAG----CVWGIVTNKPEYL---ARLILP-QLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGV 166 (229)
T ss_pred eCCCHHHHH-HHHHHCC----CeEEEECCCCHHH---HHHHHH-HcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCC
Confidence 467777777 8887766 8899999976432 223344 577753233333321 11 11 22333
Q ss_pred CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 ~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
....++++|.. .-.+.++.+|+..+
T Consensus 167 ~p~~~l~IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 167 APTDCVYVGDDERDILAARAAGMPSV 192 (229)
T ss_pred ChhhEEEeCCCHHHHHHHHHCCCcEE
Confidence 34678999965 44455788998875
No 34
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.25 E-value=7.4e-06 Score=69.24 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=52.0
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-------HHH---HHHhc--
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-------PIK---MLHKY-- 90 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-------a~~---~l~~~-- 90 (183)
++||+.++| +.|++.| +++.++||++.... ...+. .+|+.-..+.++++.. +.. .+.++
T Consensus 110 l~pg~~e~L-~~L~~~g----~~l~I~Tn~~~~~~---~~~l~-~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~ 180 (260)
T PLN03243 110 LRPGSREFV-QALKKHE----IPIAVASTRPRRYL---ERAIE-AVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGF 180 (260)
T ss_pred cCCCHHHHH-HHHHHCC----CEEEEEeCcCHHHH---HHHHH-HcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCC
Confidence 467777777 8887766 89999999765432 23344 6787533445554421 111 22333
Q ss_pred CCCeEEEEcC-hhHHHHHHHCCCcee
Q psy17092 91 HTKHTLISGQ-GPMEEIAKRLGFNKV 115 (183)
Q Consensus 91 ~~k~v~viG~-~~~~~~l~~~G~~~~ 115 (183)
....+++||. ..-.+.++.+|+..+
T Consensus 181 ~p~~~l~IgDs~~Di~aA~~aG~~~i 206 (260)
T PLN03243 181 IPERCIVFGNSNSSVEAAHDGCMKCV 206 (260)
T ss_pred ChHHeEEEcCCHHHHHHHHHcCCEEE
Confidence 3466888995 455566788998764
No 35
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.24 E-value=1.4e-05 Score=67.00 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=68.5
Q ss_pred EEEEecCCeeeeCC-----------------------------------ccCccHHHHHHHHHHhcCCCccccEEEEeCC
Q psy17092 8 GLIFDIDGVLVRGK-----------------------------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNA 52 (183)
Q Consensus 8 ~iifDiDGVL~~g~-----------------------------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNn 52 (183)
+|+||||||+.++. .+.|||.++| +.++++| ++++++||.
T Consensus 65 av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL-~~L~~~G----~~I~iVTnR 139 (237)
T PRK11009 65 AVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLI-DMHVKRG----DSIYFITGR 139 (237)
T ss_pred EEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHH-HHHHHCC----CeEEEEeCC
Confidence 89999999999621 1456699999 9999887 899999998
Q ss_pred CCCCHHHHHHHHHHHhCCCCC--ccceeccHH-----HHHHHHhcCCCeEEEEcCh-hHHHHHHHCCCceeeC
Q psy17092 53 GNSLAADKAKQLTEWLGVEVE--EDQVVMSHT-----PIKMLHKYHTKHTLISGQG-PMEEIAKRLGFNKVVT 117 (183)
Q Consensus 53 s~~~~~~~~~~L~~~lG~~~~--~~~I~ts~~-----a~~~l~~~~~k~v~viG~~-~~~~~l~~~G~~~~~t 117 (183)
+....+..++.|.+.+|++.. .+.+++... ....++++ +.++.+|.. .....++.+|.+.+..
T Consensus 140 ~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~l~~~--~i~I~IGDs~~Di~aA~~AGi~~I~v 210 (237)
T PRK11009 140 TATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQWLKKK--NIRIFYGDSDNDITAAREAGARGIRI 210 (237)
T ss_pred CCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHHHHhc--CCeEEEcCCHHHHHHHHHcCCcEEEE
Confidence 755555567777767999422 123333221 22244443 236678854 4445578899886643
No 36
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.23 E-value=9.1e-06 Score=66.87 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=51.8
Q ss_pred CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-------HH--H-HHHhc--C
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-------PI--K-MLHKY--H 91 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-------a~--~-~l~~~--~ 91 (183)
+||+.++| +.|+++| +++.++||++... ....+. .+|+.-.-+.++++.. +. . .++++ .
T Consensus 95 ~~g~~e~L-~~Lk~~g----~~~~i~Tn~~~~~---~~~~l~-~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~ 165 (224)
T PRK14988 95 REDTVPFL-EALKASG----KRRILLTNAHPHN---LAVKLE-HTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLK 165 (224)
T ss_pred CCCHHHHH-HHHHhCC----CeEEEEeCcCHHH---HHHHHH-HCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCC
Confidence 57777777 8888776 8999999965332 333454 5887533455655431 21 1 22333 3
Q ss_pred CCeEEEEcCh-hHHHHHHHCCCceee
Q psy17092 92 TKHTLISGQG-PMEEIAKRLGFNKVV 116 (183)
Q Consensus 92 ~k~v~viG~~-~~~~~l~~~G~~~~~ 116 (183)
...++++|.. .-.+.++.+|+..++
T Consensus 166 p~~~l~igDs~~di~aA~~aG~~~~~ 191 (224)
T PRK14988 166 AERTLFIDDSEPILDAAAQFGIRYCL 191 (224)
T ss_pred hHHEEEEcCCHHHHHHHHHcCCeEEE
Confidence 4678889964 334557789998543
No 37
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.21 E-value=7.7e-06 Score=62.19 Aligned_cols=85 Identities=27% Similarity=0.458 Sum_probs=58.4
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH---------HHH-HHHhc-
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT---------PIK-MLHKY- 90 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~---------a~~-~l~~~- 90 (183)
++.||+.++| +.|++.| ++++++||++ +......+. .+|+.-..+.++++.. ... .++++
T Consensus 77 ~~~~~~~~~L-~~l~~~~----~~~~i~Sn~~---~~~~~~~l~-~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~ 147 (176)
T PF13419_consen 77 QPYPGVRELL-ERLKAKG----IPLVIVSNGS---RERIERVLE-RLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLG 147 (176)
T ss_dssp EESTTHHHHH-HHHHHTT----SEEEEEESSE---HHHHHHHHH-HTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHT
T ss_pred chhhhhhhhh-hhccccc----ceeEEeecCC---ccccccccc-ccccccccccccccchhhhhhhHHHHHHHHHHHcC
Confidence 6799999999 9998776 8999999985 344445565 6888744567776641 112 23333
Q ss_pred -CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 -HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 -~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
+...+++||.. .-.+.++.+|+..+
T Consensus 148 ~~p~~~~~vgD~~~d~~~A~~~G~~~i 174 (176)
T PF13419_consen 148 IPPEEILFVGDSPSDVEAAKEAGIKTI 174 (176)
T ss_dssp SSGGGEEEEESSHHHHHHHHHTTSEEE
T ss_pred CCcceEEEEeCCHHHHHHHHHcCCeEE
Confidence 45678888864 44555778998764
No 38
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.20 E-value=2.1e-05 Score=63.64 Aligned_cols=83 Identities=23% Similarity=0.298 Sum_probs=51.8
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC--CCccceeccHH-----H--HH---HHHhc
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE--VEEDQVVMSHT-----P--IK---MLHKY 90 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~--~~~~~I~ts~~-----a--~~---~l~~~ 90 (183)
++||+.++| +.|++.| +++.++||+....... .|. .+|+. -..+.++++.. | .. .++++
T Consensus 88 l~~G~~~~L-~~L~~~g----~~~~ivT~~~~~~~~~---~l~-~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~ 158 (220)
T TIGR03351 88 ALPGAEEAF-RSLRSSG----IKVALTTGFDRDTAER---LLE-KLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELT 158 (220)
T ss_pred cCCCHHHHH-HHHHHCC----CEEEEEeCCchHHHHH---HHH-HhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHc
Confidence 567777777 8887766 8999999977554433 344 46665 22345555422 1 11 23444
Q ss_pred C---CCeEEEEcCh-hHHHHHHHCCCce
Q psy17092 91 H---TKHTLISGQG-PMEEIAKRLGFNK 114 (183)
Q Consensus 91 ~---~k~v~viG~~-~~~~~l~~~G~~~ 114 (183)
. ...++++|.. .-.+.++.+|+..
T Consensus 159 ~~~~~~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 159 GVQDVQSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred CCCChhHeEEeCCCHHHHHHHHHCCCCe
Confidence 3 3578999943 4455578899987
No 39
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.19 E-value=2.2e-05 Score=63.39 Aligned_cols=110 Identities=17% Similarity=0.289 Sum_probs=70.1
Q ss_pred CCCCceEEEEecCCeeeeCC-------------------------------------------------------ccCcc
Q psy17092 2 ILSPSFGLIFDIDGVLVRGK-------------------------------------------------------QVLPG 26 (183)
Q Consensus 2 ~~~~~~~iifDiDGVL~~g~-------------------------------------------------------~~ipg 26 (183)
+..++++++||+||||++++ ++.||
T Consensus 10 ~~~~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 89 (219)
T TIGR00338 10 LLRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVRENLPLTEG 89 (219)
T ss_pred hhccCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhcCCcCCC
Confidence 45678999999999999865 56889
Q ss_pred HHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCc-------cceecc--------H--HHH--H-H
Q psy17092 27 VQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEE-------DQVVMS--------H--TPI--K-M 86 (183)
Q Consensus 27 A~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~-------~~I~ts--------~--~a~--~-~ 86 (183)
+.++| +.|++.| ++++++||+.. ..+..+.+.+|+.--. +.+++. . .+. . .
T Consensus 90 ~~~~l-~~l~~~g----~~~~IvS~~~~----~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (219)
T TIGR00338 90 AEELV-KTLKEKG----YKVAVISGGFD----LFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLIL 160 (219)
T ss_pred HHHHH-HHHHHCC----CEEEEECCCcH----HHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHH
Confidence 99988 9998877 89999998653 2344444468875211 111111 0 222 1 2
Q ss_pred HHhc--CCCeEEEEcCh-hHHHHHHHCCCceeeCHHH
Q psy17092 87 LHKY--HTKHTLISGQG-PMEEIAKRLGFNKVVTVDS 120 (183)
Q Consensus 87 l~~~--~~k~v~viG~~-~~~~~l~~~G~~~~~t~~~ 120 (183)
++++ ....++++|.. .-.+.++.+|+...+..++
T Consensus 161 ~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~~~~ 197 (219)
T TIGR00338 161 LRKEGISPENTVAVGDGANDLSMIKAAGLGIAFNAKP 197 (219)
T ss_pred HHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEeCCCH
Confidence 2333 23467778854 4445577889876665544
No 40
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.17 E-value=2e-06 Score=72.49 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=46.3
Q ss_pred CCceEEEEecCCeeee-CCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 4 SPSFGLIFDIDGVLVR-GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~-g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
.+++.|++||||||++ ++...+++.++| ++|++.| ++++++|+. +...+...+. .+|+.
T Consensus 2 ~~~kli~~DlDGTLl~~~~~~~~~~~~ai-~~l~~~G----i~~~iaTgR---~~~~~~~~~~-~l~l~ 61 (273)
T PRK00192 2 MMKLLVFTDLDGTLLDHHTYSYEPAKPAL-KALKEKG----IPVIPCTSK---TAAEVEVLRK-ELGLE 61 (273)
T ss_pred CcceEEEEcCcccCcCCCCcCcHHHHHHH-HHHHHCC----CEEEEEcCC---CHHHHHHHHH-HcCCC
Confidence 4689999999999998 566788899999 9999887 888888764 4555445554 57764
No 41
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.15 E-value=1.4e-05 Score=64.97 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=51.2
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH---------HHH-HHHhc--
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT---------PIK-MLHKY-- 90 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~---------a~~-~l~~~-- 90 (183)
++||+.++| +.|++.| +++.++||++....+ ..+. .+|+.--.+.++++.. ... .+.++
T Consensus 93 ~~~g~~~~l-~~l~~~g----~~~~i~S~~~~~~~~---~~l~-~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 163 (222)
T PRK10826 93 LLPGVREAL-ALCKAQG----LKIGLASASPLHMLE---AVLT-MFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGV 163 (222)
T ss_pred CCCCHHHHH-HHHHHCC----CeEEEEeCCcHHHHH---HHHH-hCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCC
Confidence 456666666 7776665 899999997654332 3344 5777544455555421 111 23343
Q ss_pred CCCeEEEEcCh-hHHHHHHHCCCceee
Q psy17092 91 HTKHTLISGQG-PMEEIAKRLGFNKVV 116 (183)
Q Consensus 91 ~~k~v~viG~~-~~~~~l~~~G~~~~~ 116 (183)
....++++|.. .-.+.++.+|+..+.
T Consensus 164 ~~~~~~~igDs~~Di~aA~~aG~~~i~ 190 (222)
T PRK10826 164 DPLTCVALEDSFNGMIAAKAARMRSIV 190 (222)
T ss_pred CHHHeEEEcCChhhHHHHHHcCCEEEE
Confidence 33568899954 455667889987654
No 42
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.14 E-value=3.5e-05 Score=63.08 Aligned_cols=84 Identities=26% Similarity=0.301 Sum_probs=55.2
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH-------HHHH---HHHhcCC
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH-------TPIK---MLHKYHT 92 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~-------~a~~---~l~~~~~ 92 (183)
++||+.++| ..|++.| +++.++||++..... .+.+.+|+.--.+.++... .|.. .+.++..
T Consensus 90 ~~~gv~e~L-~~L~~~g----~~l~i~T~k~~~~~~----~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~ 160 (220)
T COG0546 90 LFPGVKELL-AALKSAG----YKLGIVTNKPERELD----ILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGL 160 (220)
T ss_pred cCCCHHHHH-HHHHhCC----CeEEEEeCCcHHHHH----HHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCC
Confidence 588999998 9999887 899999997766543 3334688875555555511 1222 2234433
Q ss_pred --CeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 93 --KHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 93 --k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
..+++||.. ...+.++.+|...+
T Consensus 161 ~~~~~l~VGDs~~Di~aA~~Ag~~~v 186 (220)
T COG0546 161 DPEEALMVGDSLNDILAAKAAGVPAV 186 (220)
T ss_pred ChhheEEECCCHHHHHHHHHcCCCEE
Confidence 378999964 55566788887643
No 43
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.14 E-value=3.5e-06 Score=68.51 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=44.1
Q ss_pred CceEEEEecCCeeeeCCcc-CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 5 PSFGLIFDIDGVLVRGKQV-LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~-ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+++.|+||+||||++.+.. -|.+.++| ++|++.| +++++.| ||+.......+. .+|++
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al-~~l~~~G----~~~~iaT---GR~~~~~~~~~~-~l~~~ 60 (230)
T PRK01158 2 KIKAIAIDIDGTITDKDRRLSLKAVEAI-RKAEKLG----IPVILAT---GNVLCFARAAAK-LIGTS 60 (230)
T ss_pred ceeEEEEecCCCcCCCCCccCHHHHHHH-HHHHHCC----CEEEEEc---CCchHHHHHHHH-HhCCC
Confidence 4799999999999987764 46799999 9999887 7888886 455555444343 57765
No 44
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.13 E-value=1.8e-06 Score=68.02 Aligned_cols=122 Identities=21% Similarity=0.343 Sum_probs=63.6
Q ss_pred CCCceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH
Q psy17092 3 LSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT 82 (183)
Q Consensus 3 ~~~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~ 82 (183)
.+++++|+||+||||+++...+..++. +.+++.|.. .+...+....+.+..+....+.+..+.+...+++.....
T Consensus 2 ~~~~~~viFD~DGTLiDs~~~~~~a~~---~~~~~~g~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (188)
T PRK10725 2 YDRYAGLIFDMDGTILDTEPTHRKAWR---EVLGRYGLQ--FDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKT 76 (188)
T ss_pred CCcceEEEEcCCCcCccCHHHHHHHHH---HHHHHcCCC--CCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 356899999999999999876555554 445554411 111112222455555555555544555544333221100
Q ss_pred ---------------HHHHHHhcCCCeEEEEcCh----hHHHHHHHCC----CceeeCHHHHHhhcCCCc
Q psy17092 83 ---------------PIKMLHKYHTKHTLISGQG----PMEEIAKRLG----FNKVVTVDSIRNAHPLLD 129 (183)
Q Consensus 83 ---------------a~~~l~~~~~k~v~viG~~----~~~~~l~~~G----~~~~~t~~~l~~a~p~l~ 129 (183)
....+.....+..+.+.++ .....++..| |+.+++.+++....|.++
T Consensus 77 ~~~~~~~~~~~~~~~~~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~ 146 (188)
T PRK10725 77 EAVKSMLLDSVEPLPLIEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPD 146 (188)
T ss_pred HHHHHHHhccCCCccHHHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChH
Confidence 0122222221122333333 2344466777 467788887766666664
No 45
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.13 E-value=2e-05 Score=61.35 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=61.1
Q ss_pred ceEEEEecCCeeeeCCc------cCccHH-----HHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCc
Q psy17092 6 SFGLIFDIDGVLVRGKQ------VLPGVQ-----DTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEE 74 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~------~ipgA~-----e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~ 74 (183)
+++|+||+||||+++.. ..++.+ .++ +.|+++| +.+.++||...... ...+. .+|+.--.
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~~~i-~~Lk~~G----~~i~IvTn~~~~~~---~~~l~-~~gi~~~~ 71 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDGYGI-RCALKSG----IEVAIITGRKAKLV---EDRCK-TLGITHLY 71 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhHHHH-HHHHHCC----CEEEEEECCCCHHH---HHHHH-HcCCCEEE
Confidence 47899999999998522 011111 267 9999887 89999999665432 23344 68886211
Q ss_pred cceeccHHHHH-HHHhc--CCCeEEEEcCh-hHHHHHHHCCCceee
Q psy17092 75 DQVVMSHTPIK-MLHKY--HTKHTLISGQG-PMEEIAKRLGFNKVV 116 (183)
Q Consensus 75 ~~I~ts~~a~~-~l~~~--~~k~v~viG~~-~~~~~l~~~G~~~~~ 116 (183)
+..-....+.. ++.++ ....++++|.. .-.+.++.+|+...+
T Consensus 72 ~~~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~v 117 (154)
T TIGR01670 72 QGQSNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLSVAV 117 (154)
T ss_pred ecccchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEec
Confidence 11111112222 33443 34679999954 555667888887544
No 46
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.12 E-value=9.4e-06 Score=69.13 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=51.6
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceecc------HHHHH-HHHhc--CC
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMS------HTPIK-MLHKY--HT 92 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts------~~a~~-~l~~~--~~ 92 (183)
+++||+.++| +.|++.| +++.++||++.... ...|. .+|+.-.-+.++++ ..+.. .+.++ ..
T Consensus 142 ~l~pg~~e~L-~~L~~~g----i~laIvSn~~~~~~---~~~L~-~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p 212 (273)
T PRK13225 142 QLFPGVADLL-AQLRSRS----LCLGILSSNSRQNI---EAFLQ-RQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQP 212 (273)
T ss_pred CcCCCHHHHH-HHHHHCC----CeEEEEeCCCHHHH---HHHHH-HcCChhheEEEEecCCCCCCHHHHHHHHHHhCcCh
Confidence 3578888888 8888776 89999999764432 33444 68875222233322 12222 23333 34
Q ss_pred CeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 93 KHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 93 k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
..++++|.. .-.+.++.+|++.+
T Consensus 213 ~~~l~IGDs~~Di~aA~~AG~~~I 236 (273)
T PRK13225 213 AAVMYVGDETRDVEAARQVGLIAV 236 (273)
T ss_pred hHEEEECCCHHHHHHHHHCCCeEE
Confidence 578899965 33445678998765
No 47
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.11 E-value=5.1e-06 Score=67.36 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=42.6
Q ss_pred ceEEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 6 SFGLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
++.|+||+||||++.+. ..|.+.++| ++|++.| +++++.|.++-..-..+ + +.++++
T Consensus 1 ik~v~~DlDGTLl~~~~~i~~~~~~~i-~~l~~~g----~~~~~~TGR~~~~~~~~---~-~~l~~~ 58 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPNRMISERAIEAI-RKAEKKG----IPVSLVTGNTVPFARAL---A-VLIGTS 58 (215)
T ss_pred CcEEEEecCCCcCCCCcccCHHHHHHH-HHHHHCC----CEEEEEcCCcchhHHHH---H-HHhCCC
Confidence 47899999999998765 567899999 9999987 78899886654443332 3 356654
No 48
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.11 E-value=4.9e-06 Score=68.52 Aligned_cols=119 Identities=20% Similarity=0.289 Sum_probs=65.6
Q ss_pred CceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccE--EEEeCCCCCCHHHHHHHHHHHhCCCC--Cc---cce
Q psy17092 5 PSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPT--VFVTNAGNSLAADKAKQLTEWLGVEV--EE---DQV 77 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~--~~lTNns~~~~~~~~~~L~~~lG~~~--~~---~~I 77 (183)
+++++||||||||++++.....|+. +.+++.| +++ -+..+..+.........+.+..+..- +. +++
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~---~~~~~~g----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWL---EALKEYG----IEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERL 73 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHH---HHHHHcC----CCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHH
Confidence 3689999999999999888777777 7777766 442 12222233332333333433232211 00 000
Q ss_pred ec--------cH----HHHHHHHhcCCC-eEEEEcCh----hHHHHHHHCC----CceeeCHHHHHhhcCCCcc
Q psy17092 78 VM--------SH----TPIKMLHKYHTK-HTLISGQG----PMEEIAKRLG----FNKVVTVDSIRNAHPLLDC 130 (183)
Q Consensus 78 ~t--------s~----~a~~~l~~~~~k-~v~viG~~----~~~~~l~~~G----~~~~~t~~~l~~a~p~l~~ 130 (183)
.. .. .+...+...+.+ .-++++++ .....+..+| |+.+++.+++.+.+|++|.
T Consensus 74 ~~~~~~~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~ 147 (221)
T COG0637 74 LYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDI 147 (221)
T ss_pred HHHHHHhhhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHH
Confidence 00 00 011222222222 34444443 3555567788 6788899999999999974
No 49
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.11 E-value=2.7e-05 Score=61.39 Aligned_cols=106 Identities=25% Similarity=0.446 Sum_probs=62.6
Q ss_pred eEEEEecCCeeeeCC------------ccC-ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCH----------HHHHHH
Q psy17092 7 FGLIFDIDGVLVRGK------------QVL-PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLA----------ADKAKQ 63 (183)
Q Consensus 7 ~~iifDiDGVL~~g~------------~~i-pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~----------~~~~~~ 63 (183)
|..+||+||||.... ..+ |++.++| +.|.+.| ..++++||-++... ...++.
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L-~~l~~~G----y~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~ 75 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEAL-RELHKKG----YKIVIVTNQSGIGRGMGEKDLENFHEKIEN 75 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHH-HHHHHTT----EEEEEEEE-CCCCCTBTCCHHHHHHHHHHH
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHH-HHHHhcC----CeEEEEeCccccccccccchHHHHHHHHHH
Confidence 467999999999652 235 4799999 9999887 89999999988865 122333
Q ss_pred HHHHhCCCCCccceeccH------HH---H--HHHHhcCC------CeEEEEcCh------------hHHHHHHHCCCce
Q psy17092 64 LTEWLGVEVEEDQVVMSH------TP---I--KMLHKYHT------KHTLISGQG------------PMEEIAKRLGFNK 114 (183)
Q Consensus 64 L~~~lG~~~~~~~I~ts~------~a---~--~~l~~~~~------k~v~viG~~------------~~~~~l~~~G~~~ 114 (183)
+.+.+|+++ .++.+. .| + .+++++.. ..-++||.. ...+.+..+|++
T Consensus 76 il~~l~ip~---~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~- 151 (159)
T PF08645_consen 76 ILKELGIPI---QVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIK- 151 (159)
T ss_dssp HHHHCTS-E---EEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT---
T ss_pred HHHHcCCce---EEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCc-
Confidence 444677773 222221 11 1 12234432 567889962 345557788987
Q ss_pred eeCHHHH
Q psy17092 115 VVTVDSI 121 (183)
Q Consensus 115 ~~t~~~l 121 (183)
..|.+++
T Consensus 152 f~tpe~~ 158 (159)
T PF08645_consen 152 FYTPEEF 158 (159)
T ss_dssp EE-HHHH
T ss_pred ccChhhc
Confidence 5577765
No 50
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.10 E-value=5.2e-05 Score=61.13 Aligned_cols=85 Identities=26% Similarity=0.343 Sum_probs=51.7
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH---------HHHH-HHHhc--
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH---------TPIK-MLHKY-- 90 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~---------~a~~-~l~~~-- 90 (183)
++||+.+++ +.|++.| +++.++||+.... ....+. .+|+.-..+.++++. .... .++++
T Consensus 94 ~~~g~~~~l-~~l~~~g----~~~~i~S~~~~~~---~~~~l~-~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 164 (226)
T PRK13222 94 LYPGVKETL-AALKAAG----YPLAVVTNKPTPF---VAPLLE-ALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGL 164 (226)
T ss_pred cCCCHHHHH-HHHHHCC----CeEEEEeCCCHHH---HHHHHH-HcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCC
Confidence 567777777 7777765 8999999875332 223343 678753334454431 1122 23333
Q ss_pred CCCeEEEEcCh-hHHHHHHHCCCceee
Q psy17092 91 HTKHTLISGQG-PMEEIAKRLGFNKVV 116 (183)
Q Consensus 91 ~~k~v~viG~~-~~~~~l~~~G~~~~~ 116 (183)
..+.++++|.. .-.+.++.+|+..+.
T Consensus 165 ~~~~~i~igD~~~Di~~a~~~g~~~i~ 191 (226)
T PRK13222 165 DPEEMLFVGDSRNDIQAARAAGCPSVG 191 (226)
T ss_pred ChhheEEECCCHHHHHHHHHCCCcEEE
Confidence 34678889965 556667889987653
No 51
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.09 E-value=6.8e-06 Score=68.49 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=45.3
Q ss_pred EEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 8 GLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 8 ~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
.|+|||||||++++. .++.+.++| ++|++.| ++++++| ||+...+...+. .+|++
T Consensus 1 li~~DlDGTll~~~~~~~~~~~~~i-~~l~~~g----~~~~~~T---gR~~~~~~~~~~-~~~~~ 56 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGYDWGPAKEVL-ERLQELG----IPVIPCT---SKTAAEVEYLRK-ELGLE 56 (256)
T ss_pred CEEEcCCCCCcCCCCcCchHHHHHH-HHHHHCC----CeEEEEc---CCCHHHHHHHHH-HcCCC
Confidence 379999999999887 788899999 9999987 8888885 677777666565 68874
No 52
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.09 E-value=2.6e-05 Score=65.41 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=45.4
Q ss_pred CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC-CCccceeccHH-------HHH---HHHhcC-
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE-VEEDQVVMSHT-------PIK---MLHKYH- 91 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~-~~~~~I~ts~~-------a~~---~l~~~~- 91 (183)
+||+.++| +.|++.| +++.++||++......+ +. .+|+. ...+.|+++.. +-. .+++++
T Consensus 103 ~pg~~elL-~~L~~~g----~~l~I~T~~~~~~~~~~---l~-~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~ 173 (267)
T PRK13478 103 IPGVLEVI-AALRARG----IKIGSTTGYTREMMDVV---VP-LAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGV 173 (267)
T ss_pred CCCHHHHH-HHHHHCC----CEEEEEcCCcHHHHHHH---HH-HHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCC
Confidence 45566666 6666655 89999998665443332 32 34332 11244554421 111 233443
Q ss_pred --CCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 92 --TKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 92 --~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
...+++||.. .-.+.++.+|+..+
T Consensus 174 ~~~~e~l~IGDs~~Di~aA~~aG~~~i 200 (267)
T PRK13478 174 YDVAACVKVDDTVPGIEEGLNAGMWTV 200 (267)
T ss_pred CCCcceEEEcCcHHHHHHHHHCCCEEE
Confidence 2568889954 44555678898654
No 53
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.08 E-value=2.6e-05 Score=66.22 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=71.7
Q ss_pred CceEEEEecCCeeee-------------CCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 5 PSFGLIFDIDGVLVR-------------GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 5 ~~~~iifDiDGVL~~-------------g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
..+.++||+||||.. ...++|++.+++ +.|++.| ++++++||++....+..++.|. ..|+.
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~g----~~i~i~T~r~~~~~~~~l~~l~-~~~~~ 230 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELV-KMYKAAG----YEIIVVSGRDGVCEEDTVEWLR-QTDIW 230 (300)
T ss_pred CCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHH-HHHHhCC----CEEEEEeCCChhhHHHHHHHHH-HcCCc
Confidence 357899999999997 457899999999 9999887 8999999999998888887776 46522
Q ss_pred CCccceec----------cHH--HH--H-HHHhc---CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 72 VEEDQVVM----------SHT--PI--K-MLHKY---HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 72 ~~~~~I~t----------s~~--a~--~-~l~~~---~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
++.-.... ... +. . .+.+. ....++++|.. ...+.++.+|+..+
T Consensus 231 f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i 293 (300)
T PHA02530 231 FDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECW 293 (300)
T ss_pred hhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEE
Confidence 21111110 111 11 1 22332 22668888854 55666788998765
No 54
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.07 E-value=3e-05 Score=69.24 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=55.6
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-------HHH---HHHhc-
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-------PIK---MLHKY- 90 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-------a~~---~l~~~- 90 (183)
.++||+.++| +.|++.| +++.++||+. ++.....|. .+|+.--.+.|+++.. +.. .++++
T Consensus 216 ~l~pGa~ElL-~~Lk~~G----iklaIaSn~~---~~~~~~~L~-~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lg 286 (381)
T PLN02575 216 RLRTGSQEFV-NVLMNYK----IPMALVSTRP---RKTLENAIG-SIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLN 286 (381)
T ss_pred CcCcCHHHHH-HHHHHCC----CeEEEEeCCC---HHHHHHHHH-HcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcC
Confidence 3578999988 9998876 8999999855 333334454 6887644455655532 111 22333
Q ss_pred -CCCeEEEEcC-hhHHHHHHHCCCceee
Q psy17092 91 -HTKHTLISGQ-GPMEEIAKRLGFNKVV 116 (183)
Q Consensus 91 -~~k~v~viG~-~~~~~~l~~~G~~~~~ 116 (183)
....++++|. ..-.+.++.+|+..+.
T Consensus 287 l~Peecl~IGDS~~DIeAAk~AGm~~Ig 314 (381)
T PLN02575 287 FIPERCIVFGNSNQTVEAAHDARMKCVA 314 (381)
T ss_pred CCcccEEEEcCCHHHHHHHHHcCCEEEE
Confidence 4567888996 4456667889987654
No 55
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.06 E-value=2.3e-05 Score=65.30 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=49.5
Q ss_pred CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-----H--HH---HHHhc--C
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-----P--IK---MLHKY--H 91 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-----a--~~---~l~~~--~ 91 (183)
+||+.++| ++|++.| +++.++||++... ....|. .+|+.-.-+.++++.. | .. .++++ .
T Consensus 110 ~pgv~e~L-~~L~~~g----~~l~I~Tn~~~~~---~~~~l~-~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~ 180 (248)
T PLN02770 110 LNGLYKLK-KWIEDRG----LKRAAVTNAPREN---AELMIS-LLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVS 180 (248)
T ss_pred CccHHHHH-HHHHHcC----CeEEEEeCCCHHH---HHHHHH-HcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCC
Confidence 45666666 6666655 8999999975433 233454 6887643455655532 1 11 22333 3
Q ss_pred CCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 92 TKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 92 ~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
...++++|.. .-.+.++.+|+..+
T Consensus 181 ~~~~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 181 KDHTFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred hhHEEEEcCCHHHHHHHHHCCCEEE
Confidence 4568889864 44555678998765
No 56
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.06 E-value=1.4e-05 Score=66.60 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=43.8
Q ss_pred CceEEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 5 PSFGLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+++.|+||+||||++.+. .-+...++| ++++++| +++++.| ||+.......+. .+|++
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~ai-~~l~~~G----~~~~iaT---GR~~~~~~~~~~-~l~~~ 60 (270)
T PRK10513 2 AIKLIAIDMDGTLLLPDHTISPAVKQAI-AAARAKG----VNVVLTT---GRPYAGVHRYLK-ELHME 60 (270)
T ss_pred ceEEEEEecCCcCcCCCCccCHHHHHHH-HHHHHCC----CEEEEec---CCChHHHHHHHH-HhCCC
Confidence 579999999999998765 556799999 9999988 7777775 565555544444 56653
No 57
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.05 E-value=1.2e-05 Score=61.29 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=35.0
Q ss_pred eEEEEecCCeeeeCC-------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC
Q psy17092 7 FGLIFDIDGVLVRGK-------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL 56 (183)
Q Consensus 7 ~~iifDiDGVL~~g~-------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~ 56 (183)
|+|+||+||||...+ .+.+++.+++ +.+++.| ..++++|-.+.+.
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L-~~l~~~G----~~IiiaTGR~~~~ 53 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKL-RHYKALG----FEIVISSSRNMRT 53 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHH-HHHHHCC----CEEEEECCCCchh
Confidence 789999999999743 2557888888 8888777 6888887655544
No 58
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.05 E-value=7.9e-06 Score=67.96 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=44.0
Q ss_pred CceEEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 5 PSFGLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+++.|+|||||||++.++ ..|...++| ++++++| +.+++.| ||+.......+. .+|++
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~ai-~~~~~~G----~~~~iaT---GR~~~~~~~~~~-~l~~~ 60 (272)
T PRK10530 2 TYRVIALDLDGTLLTPKKTILPESLEAL-ARAREAG----YKVIIVT---GRHHVAIHPFYQ-ALALD 60 (272)
T ss_pred CccEEEEeCCCceECCCCccCHHHHHHH-HHHHHCC----CEEEEEc---CCChHHHHHHHH-hcCCC
Confidence 478999999999998754 677899999 9999988 6777775 555555444444 56664
No 59
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.04 E-value=6.3e-05 Score=59.94 Aligned_cols=85 Identities=18% Similarity=0.128 Sum_probs=46.3
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC----CccceeccH----HHH--H-HHHhc
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV----EEDQVVMSH----TPI--K-MLHKY 90 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~----~~~~I~ts~----~a~--~-~l~~~ 90 (183)
+++||+.++| +.|++.+ +++++||.+........+ .+|+.- -.+.++++. .+- . .+.++
T Consensus 74 ~~~pG~~e~L-~~L~~~~-----~~~i~Tn~~~~~~~~~~~----~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~ 143 (197)
T PHA02597 74 SAYDDALDVI-NKLKEDY-----DFVAVTALGDSIDALLNR----QFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKY 143 (197)
T ss_pred cCCCCHHHHH-HHHHhcC-----CEEEEeCCccchhHHHHh----hCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHh
Confidence 4688888888 8887643 567788866655432222 333320 113343322 121 1 23345
Q ss_pred CCCeEEEEcCh-hHHHHHHHC--CCceee
Q psy17092 91 HTKHTLISGQG-PMEEIAKRL--GFNKVV 116 (183)
Q Consensus 91 ~~k~v~viG~~-~~~~~l~~~--G~~~~~ 116 (183)
+...+++||.. .-.+.++.+ |++.+.
T Consensus 144 ~~~~~v~vgDs~~di~aA~~a~~Gi~~i~ 172 (197)
T PHA02597 144 GDRVVCFVDDLAHNLDAAHEALSQLPVIH 172 (197)
T ss_pred CCCcEEEeCCCHHHHHHHHHHHcCCcEEE
Confidence 44567788864 334455677 998753
No 60
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.04 E-value=1.7e-05 Score=63.64 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=66.5
Q ss_pred ceEEEEecCCeeeeCC---------------------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHH
Q psy17092 6 SFGLIFDIDGVLVRGK---------------------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAA 58 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~---------------------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~ 58 (183)
.+.++||+|+|+|.-. .++||+.++| +.|+++| +++.++||+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL-~~Lk~~G----~~l~I~Sn~~~~~-- 74 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVL-QTLKDAG----TYLATASWNDVPE-- 74 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHH-HHHHHCC----CEEEEEeCCCChH--
Confidence 3689999999999632 5689999999 9999887 8999999973332
Q ss_pred HHHHHHHHHhCCC---------CCccceeccHH-----HH-HHHHh--------cCCCeEEEEcC-hhHHHHHHHCCCce
Q psy17092 59 DKAKQLTEWLGVE---------VEEDQVVMSHT-----PI-KMLHK--------YHTKHTLISGQ-GPMEEIAKRLGFNK 114 (183)
Q Consensus 59 ~~~~~L~~~lG~~---------~~~~~I~ts~~-----a~-~~l~~--------~~~k~v~viG~-~~~~~~l~~~G~~~ 114 (183)
+++.+.+.+|+. -.-+.++++.. +. ..++. .....++++|. ..-.+.++.+|...
T Consensus 75 -~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~ 153 (174)
T TIGR01685 75 -WAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTS 153 (174)
T ss_pred -HHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEE
Confidence 222332357764 22345554421 11 12221 33467899995 34455567888776
Q ss_pred ee
Q psy17092 115 VV 116 (183)
Q Consensus 115 ~~ 116 (183)
+.
T Consensus 154 i~ 155 (174)
T TIGR01685 154 CY 155 (174)
T ss_pred EE
Confidence 53
No 61
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.03 E-value=7.8e-06 Score=68.85 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=45.5
Q ss_pred CCceEEEEecCCeeeeCCccC-ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 4 SPSFGLIFDIDGVLVRGKQVL-PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~~i-pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
.+++.|++||||||++.+..+ +.+.++| ++|+++| +++++.| ||+...+...+. .+|++
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~i~~~~~~ai-~~l~~~G----i~~viaT---GR~~~~i~~~~~-~l~~~ 64 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTYDWQPAAPWL-TRLREAQ----VPVILCS---SKTAAEMLPLQQ-TLGLQ 64 (271)
T ss_pred CCCeEEEEeCccCCcCCCCcCcHHHHHHH-HHHHHcC----CeEEEEc---CCCHHHHHHHHH-HhCCC
Confidence 467999999999999987765 6788999 9999988 7888875 566666555554 57763
No 62
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.03 E-value=2.7e-05 Score=62.51 Aligned_cols=85 Identities=26% Similarity=0.330 Sum_probs=54.2
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-------HH--H-HHHhc-
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-------PI--K-MLHKY- 90 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-------a~--~-~l~~~- 90 (183)
.++||+.++| ++|++.| +++.++||++.... ...+. .+|+.-..+.++++.. +. . .++++
T Consensus 75 ~~~~g~~~~L-~~L~~~g----~~~~i~Sn~~~~~~---~~~l~-~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~ 145 (205)
T TIGR01454 75 EVFPGVPELL-AELRADG----VGTAIATGKSGPRA---RSLLE-ALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLD 145 (205)
T ss_pred ccCCCHHHHH-HHHHHCC----CeEEEEeCCchHHH---HHHHH-HcCChhheeeEEecCcCCCCCCChHHHHHHHHHcC
Confidence 5688899988 9998877 89999999764432 23444 6887533345554321 11 1 23333
Q ss_pred -CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 -HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 -~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
....++++|.. .-.+.++.+|+..+
T Consensus 146 ~~~~~~l~igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 146 VPPEDAVMVGDAVTDLASARAAGTATV 172 (205)
T ss_pred CChhheEEEcCCHHHHHHHHHcCCeEE
Confidence 34678999975 34455788998865
No 63
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.03 E-value=5.7e-05 Score=60.15 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=51.8
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-----H--H--H-HHHhc--
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-----P--I--K-MLHKY-- 90 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-----a--~--~-~l~~~-- 90 (183)
++||+.++| ++|++.| +++.++||+.. ......+. .+|+.-..+.++++.. | . . .++++
T Consensus 93 ~~~~~~~~L-~~L~~~g----~~~~i~Sn~~~---~~~~~~l~-~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~ 163 (198)
T TIGR01428 93 PHPDVPAGL-RALKERG----YRLAILSNGSP---AMLKSLVK-HAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGV 163 (198)
T ss_pred CCCCHHHHH-HHHHHCC----CeEEEEeCCCH---HHHHHHHH-HCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCC
Confidence 357777777 7787766 89999999653 23334455 6887533456666532 1 1 1 22333
Q ss_pred CCCeEEEEcChh-HHHHHHHCCCcee
Q psy17092 91 HTKHTLISGQGP-MEEIAKRLGFNKV 115 (183)
Q Consensus 91 ~~k~v~viG~~~-~~~~l~~~G~~~~ 115 (183)
....++++|... -.+.++.+|+..+
T Consensus 164 ~p~~~~~vgD~~~Di~~A~~~G~~~i 189 (198)
T TIGR01428 164 PPDEVLFVASNPWDLGGAKKFGFKTA 189 (198)
T ss_pred ChhhEEEEeCCHHHHHHHHHCCCcEE
Confidence 346788888653 3344678998765
No 64
>PLN02940 riboflavin kinase
Probab=98.02 E-value=3.7e-05 Score=68.40 Aligned_cols=85 Identities=18% Similarity=0.278 Sum_probs=51.6
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-------HHH---HHHhc--
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-------PIK---MLHKY-- 90 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-------a~~---~l~~~-- 90 (183)
++||+.++| ++|++.| +++.++||++.... ...+.+.+|+.-.-+.++++.. +.. .++++
T Consensus 94 l~pGv~elL-~~Lk~~g----~~l~IvTn~~~~~~---~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv 165 (382)
T PLN02940 94 ALPGANRLI-KHLKSHG----VPMALASNSPRANI---EAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNV 165 (382)
T ss_pred CCcCHHHHH-HHHHHCC----CcEEEEeCCcHHHH---HHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCC
Confidence 568888888 8888776 89999999764432 2334334666433344554432 111 22333
Q ss_pred CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 ~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
....+++||.. .-.+.++.+|++.+
T Consensus 166 ~p~~~l~VGDs~~Di~aA~~aGi~~I 191 (382)
T PLN02940 166 EPSNCLVIEDSLPGVMAGKAAGMEVI 191 (382)
T ss_pred ChhHEEEEeCCHHHHHHHHHcCCEEE
Confidence 34678888854 44555778998754
No 65
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.02 E-value=1.5e-05 Score=62.68 Aligned_cols=45 Identities=27% Similarity=0.458 Sum_probs=37.6
Q ss_pred EEEEecCCeeeeCC------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCH
Q psy17092 8 GLIFDIDGVLVRGK------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLA 57 (183)
Q Consensus 8 ~iifDiDGVL~~g~------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~ 57 (183)
.|+|||||||.+++ ...|++.+++ ++++++| .+++++|..+-...
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~-~~l~~~G----~~ivy~TGRp~~~~ 57 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLY-RDIQNNG----YKILYLTARPIGQA 57 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHH-HHHHHcC----CeEEEEcCCcHHHH
Confidence 38999999999876 6789999999 9999987 89999986554443
No 66
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.02 E-value=1.2e-05 Score=69.45 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=52.8
Q ss_pred CceEEEEecCCeeeeCCccC----ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceecc
Q psy17092 5 PSFGLIFDIDGVLVRGKQVL----PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMS 80 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~i----pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts 80 (183)
..+.|+|||||||...+..+ |++.++| +.|++.| +++.++||++... ....|. .+|+.---+-|+++
T Consensus 127 ~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL-~eLkekG----ikLaIvTNg~Re~---v~~~Le-~lgL~~yFDvII~~ 197 (303)
T PHA03398 127 IPHVIVFDLDSTLITDEEPVRIRDPFVYDSL-DELKERG----CVLVLWSYGNREH---VVHSLK-ETKLEGYFDIIICG 197 (303)
T ss_pred eccEEEEecCCCccCCCCccccCChhHHHHH-HHHHHCC----CEEEEEcCCChHH---HHHHHH-HcCCCccccEEEEC
Confidence 45889999999999988764 9999999 9999988 8999999865442 234455 68887444556666
Q ss_pred HH
Q psy17092 81 HT 82 (183)
Q Consensus 81 ~~ 82 (183)
+.
T Consensus 198 g~ 199 (303)
T PHA03398 198 GR 199 (303)
T ss_pred CC
Confidence 54
No 67
>PLN02954 phosphoserine phosphatase
Probab=98.01 E-value=4e-05 Score=62.14 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=29.0
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+.||+.+++ +.+++.| +++.++||+... .++.+.+.+|++
T Consensus 85 l~pg~~e~l-~~l~~~g----~~~~IvS~~~~~----~i~~~l~~~gi~ 124 (224)
T PLN02954 85 LSPGIPELV-KKLRARG----TDVYLVSGGFRQ----MIAPVAAILGIP 124 (224)
T ss_pred CCccHHHHH-HHHHHCC----CEEEEECCCcHH----HHHHHHHHhCCC
Confidence 468999988 9998876 899999986533 334444468875
No 68
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.99 E-value=9.8e-05 Score=58.36 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=48.6
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCc--------cceecc---------H--HH
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEE--------DQVVMS---------H--TP 83 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~--------~~I~ts---------~--~a 83 (183)
+.||+.++| +.|++.| ++++++||+... .++.+.+.+|+.--. ....++ . .+
T Consensus 81 ~~~g~~e~l-~~l~~~g----~~~~IvS~~~~~----~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~ 151 (201)
T TIGR01491 81 LRDYAEELV-RWLKEKG----LKTAIVSGGIMC----LAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEA 151 (201)
T ss_pred CCccHHHHH-HHHHHCC----CEEEEEeCCcHH----HHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHH
Confidence 456667766 7777665 899999986432 344444467764211 111111 0 12
Q ss_pred HH-HHHhc--CCCeEEEEcCh-hHHHHHHHCCCceeeCH
Q psy17092 84 IK-MLHKY--HTKHTLISGQG-PMEEIAKRLGFNKVVTV 118 (183)
Q Consensus 84 ~~-~l~~~--~~k~v~viG~~-~~~~~l~~~G~~~~~t~ 118 (183)
.. +.+++ ....++++|.. .-.+.++.+|+...+..
T Consensus 152 ~~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~ 190 (201)
T TIGR01491 152 VERLKRELNPSLTETVAVGDSKNDLPMFEVADISISLGD 190 (201)
T ss_pred HHHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECC
Confidence 22 22333 23568888854 45566788888776643
No 69
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.99 E-value=4.8e-05 Score=63.12 Aligned_cols=83 Identities=17% Similarity=0.146 Sum_probs=45.1
Q ss_pred CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCC-ccceeccHH-------HHH---HHHhcC-
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVE-EDQVVMSHT-------PIK---MLHKYH- 91 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~-~~~I~ts~~-------a~~---~l~~~~- 91 (183)
+||+.++| +.|++.| +++.++||++.... ...|. .+|+.-- .+.|+++.. +-. .+++++
T Consensus 101 ~pg~~e~L-~~L~~~g----~~l~IvT~~~~~~~---~~~l~-~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~ 171 (253)
T TIGR01422 101 IPGVIEVI-AYLRARG----IKIGSTTGYTREMM---DVVAP-EAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGV 171 (253)
T ss_pred CCCHHHHH-HHHHHCC----CeEEEECCCcHHHH---HHHHH-HHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCC
Confidence 34455555 6665555 88999998653322 23333 4665422 245555422 111 233443
Q ss_pred --CCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 92 --TKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 92 --~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
...+++||.. .-.+.++.+|+..+
T Consensus 172 ~~~~~~l~IGDs~~Di~aA~~aGi~~i 198 (253)
T TIGR01422 172 YDVAACVKVGDTVPDIEEGRNAGMWTV 198 (253)
T ss_pred CCchheEEECCcHHHHHHHHHCCCeEE
Confidence 3568889954 44555678898764
No 70
>PRK10976 putative hydrolase; Provisional
Probab=97.98 E-value=1.8e-05 Score=65.98 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=43.5
Q ss_pred ceEEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 6 SFGLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+|.|++||||||++.+. .-+.+.++| ++++++| +++++.| ||+.......+. .+|++
T Consensus 2 ikli~~DlDGTLl~~~~~is~~~~~ai-~~l~~~G----~~~~iaT---GR~~~~~~~~~~-~l~~~ 59 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHTLSPYAKETL-KLLTARG----IHFVFAT---GRHHVDVGQIRD-NLEIK 59 (266)
T ss_pred ceEEEEeCCCCCcCCCCcCCHHHHHHH-HHHHHCC----CEEEEEc---CCChHHHHHHHH-hcCCC
Confidence 68999999999998765 566789999 9999988 7777775 566655444444 57764
No 71
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.98 E-value=2e-05 Score=66.13 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=44.0
Q ss_pred ceEEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 6 SFGLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
++.|+|||||||+..+. .-+.+.++| ++|+++| +++++.| ||+.......+. .+|++
T Consensus 2 ~kli~~DlDGTLl~~~~~i~~~~~~ai-~~l~~~G----~~~~iaT---GR~~~~~~~~~~-~l~~~ 59 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHHLGEKTLSTL-ARLRERD----ITLTFAT---GRHVLEMQHILG-ALSLD 59 (272)
T ss_pred ccEEEEeCCCcCcCCCCcCCHHHHHHH-HHHHHCC----CEEEEEC---CCCHHHHHHHHH-HcCCC
Confidence 68999999999998654 567789999 9999988 7777775 666666555554 57764
No 72
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.98 E-value=7.3e-06 Score=66.53 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=41.0
Q ss_pred EEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 8 GLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 8 ~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
.|++||||||.++++ .++.+.++| +.+++.| ++++++|+++.... ...+ +.+|++
T Consensus 1 ~i~~DlDGTLL~~~~~~~~~~~~~l-~~l~~~g----i~~~i~TgR~~~~~---~~~~-~~l~~~ 56 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSYDWQPAAPWL-TRLQEAG----IPVILCTSKTAAEV---EYLQ-KALGLT 56 (221)
T ss_pred CEEEeCCCCCcCCCCCCcHHHHHHH-HHHHHCC----CeEEEEcCCCHHHH---HHHH-HHcCCC
Confidence 379999999998766 666789999 9999887 89999987554433 3333 356654
No 73
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.96 E-value=5.2e-05 Score=68.73 Aligned_cols=85 Identities=15% Similarity=0.253 Sum_probs=50.6
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH------H--HHH-HHHhcCCC
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH------T--PIK-MLHKYHTK 93 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~------~--a~~-~l~~~~~k 93 (183)
++||+.++| ++|++.| +++.++||++... ....+. .+|+.--.+.++++. . +.. .+++++.+
T Consensus 331 l~pG~~e~L-~~Lk~~g----~~l~IvS~~~~~~---~~~~l~-~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~ 401 (459)
T PRK06698 331 LYPNVKEIF-TYIKENN----CSIYIASNGLTEY---LRAIVS-YYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIK 401 (459)
T ss_pred cCCCHHHHH-HHHHHCC----CeEEEEeCCchHH---HHHHHH-HCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcc
Confidence 356777777 7777665 8999999965433 233444 577642223333321 1 222 23455567
Q ss_pred eEEEEcCh-hHHHHHHHCCCceee
Q psy17092 94 HTLISGQG-PMEEIAKRLGFNKVV 116 (183)
Q Consensus 94 ~v~viG~~-~~~~~l~~~G~~~~~ 116 (183)
.++++|.. .-.+.++.+|+..+.
T Consensus 402 ~~v~VGDs~~Di~aAk~AG~~~I~ 425 (459)
T PRK06698 402 EAAVVGDRLSDINAAKDNGLIAIG 425 (459)
T ss_pred eEEEEeCCHHHHHHHHHCCCeEEE
Confidence 89999964 334456889987653
No 74
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.96 E-value=4.2e-05 Score=61.14 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=62.1
Q ss_pred CceEEEEecCCeeeeC-------Cc-cCccHH---HHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCC
Q psy17092 5 PSFGLIFDIDGVLVRG-------KQ-VLPGVQ---DTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVE 73 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g-------~~-~ipgA~---e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~ 73 (183)
.+++|+||+||||.++ +. ..+-.. ..+ +.|+++| +++.++||..... +..+.+.+|+..
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i-~~L~~~G----i~v~I~T~~~~~~----v~~~l~~lgl~~- 89 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGI-RCLLTSG----IEVAIITGRKSKL----VEDRMTTLGITH- 89 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHH-HHHHHCC----CEEEEEeCCCcHH----HHHHHHHcCCce-
Confidence 4799999999999986 22 222222 466 8888877 8999999875432 233334688762
Q ss_pred ccceeccH----HHHH-HHHhcC--CCeEEEEcCh-hHHHHHHHCCCceee
Q psy17092 74 EDQVVMSH----TPIK-MLHKYH--TKHTLISGQG-PMEEIAKRLGFNKVV 116 (183)
Q Consensus 74 ~~~I~ts~----~a~~-~l~~~~--~k~v~viG~~-~~~~~l~~~G~~~~~ 116 (183)
++... .... +++++. ...++++|.. ...+.++.+|+....
T Consensus 90 ---~f~g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~v 137 (183)
T PRK09484 90 ---LYQGQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVAV 137 (183)
T ss_pred ---eecCCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEec
Confidence 23221 1222 334443 3578999965 455667889988554
No 75
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.96 E-value=4.3e-05 Score=59.75 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=48.6
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-----H----HH-HHHhc--
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-----P----IK-MLHKY-- 90 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-----a----~~-~l~~~-- 90 (183)
++||+.++| +.|++.| +++.++||+ . .....|. .+|+.-..+.++.+.. | .. .++++
T Consensus 89 ~~~g~~~~l-~~l~~~g----~~i~i~S~~--~---~~~~~l~-~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~ 157 (185)
T TIGR02009 89 VLPGIENFL-KRLKKKG----IAVGLGSSS--K---NADRILA-KLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGV 157 (185)
T ss_pred CCcCHHHHH-HHHHHcC----CeEEEEeCc--h---hHHHHHH-HcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCC
Confidence 567788887 8887766 788999986 1 1223454 6887533445554321 1 11 23333
Q ss_pred CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 ~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
....+++||.. .-.+.++.+|+..+
T Consensus 158 ~~~~~v~IgD~~~di~aA~~~G~~~i 183 (185)
T TIGR02009 158 SPNECVVFEDALAGVQAARAAGMFAV 183 (185)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCeEe
Confidence 33567778854 44555678888654
No 76
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.95 E-value=6e-05 Score=60.32 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=52.3
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH-----H--H--HH-HHHhc-
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH-----T--P--IK-MLHKY- 90 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~-----~--a--~~-~l~~~- 90 (183)
.++||+.++| +.|++.| +++.++||++... ....+. .+|+.-..+.++++. . + .. .++++
T Consensus 85 ~~~~g~~~~L-~~l~~~g----~~~~i~S~~~~~~---~~~~l~-~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~ 155 (213)
T TIGR01449 85 SVFPGVEATL-GALRAKG----LRLGLVTNKPTPL---ARPLLE-LLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLG 155 (213)
T ss_pred ccCCCHHHHH-HHHHHCC----CeEEEEeCCCHHH---HHHHHH-HcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcC
Confidence 4678888888 8888776 8999999865432 233344 577753334444432 1 1 12 23343
Q ss_pred -CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 -HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 -~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
....++++|.. .-.+.++.+|+..+
T Consensus 156 ~~~~~~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 156 VAPQQMVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred CChhHeEEeCCCHHHHHHHHHCCCeEE
Confidence 34568889964 44555778998765
No 77
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.91 E-value=1.7e-05 Score=66.13 Aligned_cols=59 Identities=27% Similarity=0.415 Sum_probs=44.1
Q ss_pred CCceEEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 4 SPSFGLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
++++.++|||||||.+.+. .-+...++| +++++.| +++++.|.++- ......+. .+|++
T Consensus 1 ~~~kli~~DlDGTLl~~~~~i~~~~~~al-~~~~~~g----~~v~iaTGR~~---~~~~~~~~-~l~~~ 60 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNKTISPETKEAL-ARLREKG----VKVVLATGRPL---PDVLSILE-ELGLD 60 (264)
T ss_pred CCeeEEEEcCCCCccCCCCccCHHHHHHH-HHHHHCC----CEEEEECCCCh---HHHHHHHH-HcCCC
Confidence 4679999999999998776 556688888 9999988 88899875544 44344443 56665
No 78
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.88 E-value=7.4e-05 Score=63.32 Aligned_cols=83 Identities=23% Similarity=0.302 Sum_probs=48.1
Q ss_pred CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH-----HH----HH-HHHhc--C
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH-----TP----IK-MLHKY--H 91 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~-----~a----~~-~l~~~--~ 91 (183)
+||+.++| +.|++.| ++++++||++... ....+. .+|+.-.-+.++++. .+ .. .++++ .
T Consensus 103 ~~g~~e~L-~~Lk~~g----~~l~ivTn~~~~~---~~~~l~-~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~ 173 (272)
T PRK13223 103 YPGVRDTL-KWLKKQG----VEMALITNKPERF---VAPLLD-QMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVP 173 (272)
T ss_pred CCCHHHHH-HHHHHCC----CeEEEEECCcHHH---HHHHHH-HcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCC
Confidence 56677777 7777665 8999999865432 223344 577653223344431 11 11 23333 3
Q ss_pred CCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 92 TKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 92 ~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
...++++|.. .-.+.++.+|+..+
T Consensus 174 ~~~~l~IGD~~~Di~aA~~aGi~~i 198 (272)
T PRK13223 174 PSQSLFVGDSRSDVLAAKAAGVQCV 198 (272)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEE
Confidence 4678889965 44456788998754
No 79
>PTZ00174 phosphomannomutase; Provisional
Probab=97.88 E-value=3.5e-05 Score=64.21 Aligned_cols=55 Identities=27% Similarity=0.348 Sum_probs=43.0
Q ss_pred CCCceEEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHH
Q psy17092 3 LSPSFGLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLT 65 (183)
Q Consensus 3 ~~~~~~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~ 65 (183)
.++++.|+|||||||++++. .-|...++| ++++++| +.+++.| ||+...+.+.+.
T Consensus 2 ~~~~klia~DlDGTLL~~~~~is~~~~~ai-~~l~~~G----i~~viaT---GR~~~~i~~~l~ 57 (247)
T PTZ00174 2 EMKKTILLFDVDGTLTKPRNPITQEMKDTL-AKLKSKG----FKIGVVG---GSDYPKIKEQLG 57 (247)
T ss_pred CCCCeEEEEECcCCCcCCCCCCCHHHHHHH-HHHHHCC----CEEEEEc---CCCHHHHHHHHh
Confidence 46789999999999998865 567788998 9999988 7777775 566666555443
No 80
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.88 E-value=3.4e-05 Score=66.71 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=45.4
Q ss_pred ceEEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 6 SFGLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
++.|++||||||++.+. ..+.+.++| ++|++.| +++++.| +|+..++..... .+|+.
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL-~~Lk~~G----I~vVlaT---GRt~~ev~~l~~-~Lgl~ 58 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQAL-AALERRS----IPLVLYS---LRTRAQLEHLCR-QLRLE 58 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHH-HHHHHCC----CEEEEEc---CCCHHHHHHHHH-HhCCC
Confidence 37899999999998544 677799999 9999987 8888875 677777666554 68875
No 81
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.87 E-value=0.00028 Score=62.51 Aligned_cols=112 Identities=24% Similarity=0.356 Sum_probs=71.9
Q ss_pred ceEEEEecCCeeeeC------------CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC-----------HHHHHH
Q psy17092 6 SFGLIFDIDGVLVRG------------KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL-----------AADKAK 62 (183)
Q Consensus 6 ~~~iifDiDGVL~~g------------~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~-----------~~~~~~ 62 (183)
.+.++||-||||+.. -.+.||+.++| ++|++.| ++++++||+++.. ...++.
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L-~~Lk~~G----~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~ 76 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPAL-LKLQKAG----YKLVMVTNQDGLGTDSFPQEDFDPPHNLMM 76 (354)
T ss_pred CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHH-HHHHhCC----CeEEEEECCccccCccccHHHHhhHHHHHH
Confidence 578999999999974 46799999999 9999877 8999999975321 122233
Q ss_pred HHHHHhCCCCCcccee-c---------cHHH----HH-HHHhc--CCCeEEEEcCh-hHHHHHHHCCCcee------eCH
Q psy17092 63 QLTEWLGVEVEEDQVV-M---------SHTP----IK-MLHKY--HTKHTLISGQG-PMEEIAKRLGFNKV------VTV 118 (183)
Q Consensus 63 ~L~~~lG~~~~~~~I~-t---------s~~a----~~-~l~~~--~~k~v~viG~~-~~~~~l~~~G~~~~------~t~ 118 (183)
.+.+.+|+.+ +.++ . ...| .. +++++ ....+++||.. ...+.++.+|++.+ +++
T Consensus 77 ~iL~~~gl~f--d~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~~~~~~ 154 (354)
T PRK05446 77 QIFESQGIKF--DEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYARETLNW 154 (354)
T ss_pred HHHHHcCCce--eeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEECCCCCH
Confidence 3334688763 3332 1 1111 12 22332 34678888964 33455678998654 566
Q ss_pred HHHHhh
Q psy17092 119 DSIRNA 124 (183)
Q Consensus 119 ~~l~~a 124 (183)
+++.+.
T Consensus 155 ~~i~~~ 160 (354)
T PRK05446 155 DAIAEQ 160 (354)
T ss_pred HHHHHH
Confidence 666555
No 82
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.86 E-value=4.8e-05 Score=70.53 Aligned_cols=65 Identities=26% Similarity=0.437 Sum_probs=49.7
Q ss_pred CCCceEEEEecCCeeeeCC-------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC-----HHH---HH
Q psy17092 3 LSPSFGLIFDIDGVLVRGK-------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL-----AAD---KA 61 (183)
Q Consensus 3 ~~~~~~iifDiDGVL~~g~-------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~-----~~~---~~ 61 (183)
.+..+.++||+||||+... -++||+.+.| +.|++.| ++++++||.++.. .++ .+
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L-~~L~~~G----y~IvIvTNQ~gI~~G~~~~~~~~~ki 239 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKL-KELEADG----FKICIFTNQGGIARGKINADDFKAKI 239 (526)
T ss_pred CccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHH-HHHHHCC----CEEEEEECCcccccCcccHHHHHHHH
Confidence 3557899999999999643 1589999999 9999987 8999999988843 222 23
Q ss_pred HHHHHHhCCCC
Q psy17092 62 KQLTEWLGVEV 72 (183)
Q Consensus 62 ~~L~~~lG~~~ 72 (183)
..+.+.+|+++
T Consensus 240 ~~iL~~lgipf 250 (526)
T TIGR01663 240 EAIVAKLGVPF 250 (526)
T ss_pred HHHHHHcCCce
Confidence 44445788874
No 83
>PRK09449 dUMP phosphatase; Provisional
Probab=97.86 E-value=0.00011 Score=59.43 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=48.6
Q ss_pred CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-----H----HH-HHHhcC--
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-----P----IK-MLHKYH-- 91 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-----a----~~-~l~~~~-- 91 (183)
+||+.++| +.|+ .+ +++.++||+... .....|. .+|+.-.-+.++++.. | .. .+.+++
T Consensus 97 ~~g~~~~L-~~L~-~~----~~~~i~Tn~~~~---~~~~~l~-~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~ 166 (224)
T PRK09449 97 LPGAVELL-NALR-GK----VKMGIITNGFTE---LQQVRLE-RTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNP 166 (224)
T ss_pred CccHHHHH-HHHH-hC----CeEEEEeCCcHH---HHHHHHH-hCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCC
Confidence 44555555 5665 23 789999996532 2233455 6887533455655532 1 11 234443
Q ss_pred -CCeEEEEcChh--HHHHHHHCCCceee
Q psy17092 92 -TKHTLISGQGP--MEEIAKRLGFNKVV 116 (183)
Q Consensus 92 -~k~v~viG~~~--~~~~l~~~G~~~~~ 116 (183)
...+++||... -.+.++.+|+..+.
T Consensus 167 ~~~~~~~vgD~~~~Di~~A~~aG~~~i~ 194 (224)
T PRK09449 167 DRSRVLMVGDNLHSDILGGINAGIDTCW 194 (224)
T ss_pred CcccEEEEcCCcHHHHHHHHHCCCcEEE
Confidence 25789999763 46677899998654
No 84
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.83 E-value=1.9e-05 Score=65.58 Aligned_cols=55 Identities=24% Similarity=0.472 Sum_probs=41.3
Q ss_pred EEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 8 GLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 8 ~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
.|+|||||||++.+. .-+.+.++| ++|++.| +++++.|+++ ...+...+. .+|++
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i-~~l~~~G----~~~~iaTGR~---~~~~~~~~~-~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEAL-AKLREKG----IKVVLATGRP---YKEVKNILK-ELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHH-HHHHHCC----CeEEEEeCCC---HHHHHHHHH-HcCCC
Confidence 379999999998765 457799999 9999987 7889987655 444444444 56664
No 85
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.81 E-value=2.4e-05 Score=63.25 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=39.8
Q ss_pred EEEecCCeeeeCCccC-ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 9 LIFDIDGVLVRGKQVL-PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 9 iifDiDGVL~~g~~~i-pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|+|||||||++....+ +.+.++| +++++.| +++++.|. |+.......+ +.+|++
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al-~~l~~~G----i~~~~aTG---R~~~~~~~~~-~~l~~~ 55 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALEAI-RKAESVG----IPVVLVTG---NSVQFARALA-KLIGTP 55 (225)
T ss_pred CeEeccCccCCCCcccCHHHHHHH-HHHHHCC----CEEEEEcC---CchHHHHHHH-HHhCCC
Confidence 5899999999886644 6678888 9999888 88888864 5555544434 357753
No 86
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=97.80 E-value=0.00011 Score=58.56 Aligned_cols=115 Identities=18% Similarity=0.280 Sum_probs=70.2
Q ss_pred CCceEEEEecCCeeeeCCccCcc---------H--HHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC
Q psy17092 4 SPSFGLIFDIDGVLVRGKQVLPG---------V--QDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV 72 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~~ipg---------A--~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~ 72 (183)
...++++||+||||.+|.-.+.+ . -..+ +.|++.| +++.++||++.... ...+. .+|+.-
T Consensus 5 ~~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~-~~L~~~G----i~laIiT~k~~~~~---~~~l~-~lgi~~ 75 (169)
T TIGR02726 5 KNIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGV-IVLQLCG----IDVAIITSKKSGAV---RHRAE-ELKIKR 75 (169)
T ss_pred ccCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHH-HHHHHCC----CEEEEEECCCcHHH---HHHHH-HCCCcE
Confidence 34799999999999987422111 1 2245 8898877 89999999765533 23444 688862
Q ss_pred CccceeccH-HHHH-HHHhc--CCCeEEEEcCh-hHHHHHHHCCCceee--CHHHHHhhcCCC
Q psy17092 73 EEDQVVMSH-TPIK-MLHKY--HTKHTLISGQG-PMEEIAKRLGFNKVV--TVDSIRNAHPLL 128 (183)
Q Consensus 73 ~~~~I~ts~-~a~~-~l~~~--~~k~v~viG~~-~~~~~l~~~G~~~~~--t~~~l~~a~p~l 128 (183)
-.+.+ .+. .+.. +++++ ....++++|.. ...+.++.+|+.... ..+++..+...+
T Consensus 76 ~f~~~-kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~nA~~~lk~~A~~I 137 (169)
T TIGR02726 76 FHEGI-KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGDAVADVKEAAAYV 137 (169)
T ss_pred EEecC-CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcCchHHHHHhCCEE
Confidence 11222 222 2333 33444 33679999964 455667788876554 456676665544
No 87
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.73 E-value=4.1e-05 Score=63.77 Aligned_cols=62 Identities=24% Similarity=0.422 Sum_probs=53.4
Q ss_pred CCceEEEEecCCeeeeC---------------------------CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC
Q psy17092 4 SPSFGLIFDIDGVLVRG---------------------------KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL 56 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g---------------------------~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~ 56 (183)
+...+|+||||+|+... ..++||+.+++ +.+++.| ..++|+||.....
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~-~~~~~~G----~~V~~iT~R~~~~ 144 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELY-NYARSRG----VKVFFITGRPESQ 144 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHH-HHHHHTT----EEEEEEEEEETTC
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHH-HHHHHCC----CeEEEEecCCchh
Confidence 34679999999998642 16799999999 9999988 8999999999888
Q ss_pred HHHHHHHHHHHhCCC
Q psy17092 57 AADKAKQLTEWLGVE 71 (183)
Q Consensus 57 ~~~~~~~L~~~lG~~ 71 (183)
++.-.+.|. ..|+.
T Consensus 145 r~~T~~nL~-~~G~~ 158 (229)
T PF03767_consen 145 REATEKNLK-KAGFP 158 (229)
T ss_dssp HHHHHHHHH-HHTTS
T ss_pred HHHHHHHHH-HcCCC
Confidence 888888898 69986
No 88
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.73 E-value=3.1e-05 Score=67.11 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=39.9
Q ss_pred CCceEEEEecCCeeeeCC------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCC
Q psy17092 4 SPSFGLIFDIDGVLVRGK------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS 55 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~ 55 (183)
|..|+|++|+|+|||.|- .+++|..++| +.|++.| +.+.++|||...
T Consensus 1 ~~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L-~~L~~~G----i~lai~S~n~~~ 59 (320)
T TIGR01686 1 PALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKI-KTLKKQG----FLLALASKNDED 59 (320)
T ss_pred CCeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHH-HHHHhCC----CEEEEEcCCCHH
Confidence 457999999999999873 3568899999 9999888 899999998653
No 89
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.62 E-value=0.00013 Score=58.63 Aligned_cols=54 Identities=20% Similarity=0.433 Sum_probs=40.8
Q ss_pred EEEecCCeeeeCC-ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 9 LIFDIDGVLVRGK-QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 9 iifDiDGVL~~g~-~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|+||+||||.+.+ .+-|...++| +.|+++| .++++. |||+......-+. .+++.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al-~~l~~~g----~~~~i~---TGR~~~~~~~~~~-~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEAL-KELQEKG----IKLVIA---TGRSYSSIKRLLK-ELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHHH-HHHHHTT----CEEEEE---CSSTHHHHHHHHH-HTTHC
T ss_pred cEEEECCceecCCCeeCHHHHHHH-Hhhcccc----eEEEEE---ccCcccccccccc-cccch
Confidence 6899999999754 4566789999 9999888 676776 5677777555454 68775
No 90
>PLN02887 hydrolase family protein
Probab=97.61 E-value=7.1e-05 Score=70.17 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=44.8
Q ss_pred CCCceEEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCC
Q psy17092 3 LSPSFGLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGV 70 (183)
Q Consensus 3 ~~~~~~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~ 70 (183)
-+++|.|+|||||||++.+. .-+...++| ++++++| +.+++.| ||+.......+. .+|+
T Consensus 305 ~~~iKLIa~DLDGTLLn~d~~Is~~t~eAI-~kl~ekG----i~~vIAT---GR~~~~i~~~l~-~L~l 364 (580)
T PLN02887 305 KPKFSYIFCDMDGTLLNSKSQISETNAKAL-KEALSRG----VKVVIAT---GKARPAVIDILK-MVDL 364 (580)
T ss_pred ccCccEEEEeCCCCCCCCCCccCHHHHHHH-HHHHHCC----CeEEEEc---CCCHHHHHHHHH-HhCc
Confidence 35789999999999998765 667799999 9999988 6777775 566665544444 4654
No 91
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.60 E-value=0.00021 Score=54.51 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=24.7
Q ss_pred CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHH
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKA 61 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~ 61 (183)
+||+.+++ +.|++.| +++.++||+.........
T Consensus 66 ~~g~~e~l-~~L~~~g----~~~~i~T~~~~~~~~~~~ 98 (154)
T TIGR01549 66 IRGAADLL-KRLKEAG----IKLGIISNGSLRAQKLLL 98 (154)
T ss_pred ccCHHHHH-HHHHHCc----CeEEEEeCCchHHHHHHH
Confidence 57888888 8888776 899999997755544333
No 92
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.60 E-value=9.1e-05 Score=57.89 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=34.4
Q ss_pred EEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccE--EEEeCCCCCCHHHHHHHHHHHhCCCCCc
Q psy17092 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPT--VFVTNAGNSLAADKAKQLTEWLGVEVEE 74 (183)
Q Consensus 8 ~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~--~~lTNns~~~~~~~~~~L~~~lG~~~~~ 74 (183)
+|+||+||||+++...+-.+.. +.+.+.| .++ .+.....+.+..+..+.+...+|.++++
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~---~~~~~~g----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 62 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWK---ALADELG----IPFDEEFNESLKGVSREDSLERILDLGGKKYSE 62 (185)
T ss_pred CeEEcCCCccccChHHHHHHHH---HHHHHcC----CCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCH
Confidence 5899999999999886555544 3333333 331 1112233455555555554456765543
No 93
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=97.54 E-value=0.00017 Score=58.42 Aligned_cols=119 Identities=14% Similarity=0.156 Sum_probs=65.9
Q ss_pred CCceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEE---EEeCCCCCCHHHHHHHHHHHhCCCCCccceecc
Q psy17092 4 SPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTV---FVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMS 80 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~---~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts 80 (183)
+++++++||+||||+++......+.. +.+++.| +++- +.....+.+..++.+.+.+.+|.+...+++..-
T Consensus 2 ~~~~~viFD~DGTL~d~~~~~~~a~~---~~~~~~g----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (221)
T PRK10563 2 SQIEAVFFDCDGTLVDSEVICSRAYV---TMFAEFG----ITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPV 74 (221)
T ss_pred CCCCEEEECCCCCCCCChHHHHHHHH---HHHHHcC----CCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 35799999999999998775544443 4454444 3321 112234566677777776667877554443211
Q ss_pred H---H-------------HHHHHHhcCCCeEEEEcCh---hHHHHHHHCCC-----ceeeCHHHHHhhcCCCcc
Q psy17092 81 H---T-------------PIKMLHKYHTKHTLISGQG---PMEEIAKRLGF-----NKVVTVDSIRNAHPLLDC 130 (183)
Q Consensus 81 ~---~-------------a~~~l~~~~~k~v~viG~~---~~~~~l~~~G~-----~~~~t~~~l~~a~p~l~~ 130 (183)
. . +...++..+ -.+.++.+. .+...++..|+ +.+++.+++...+|.++.
T Consensus 75 ~~~~~~~~~~~~~~~~~gv~~~L~~L~-~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~ 147 (221)
T PRK10563 75 YRAEVARLFDSELEPIAGANALLESIT-VPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPAL 147 (221)
T ss_pred HHHHHHHHHHccCCcCCCHHHHHHHcC-CCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHH
Confidence 0 0 112333333 233343332 24444566674 245677777777776643
No 94
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.54 E-value=0.00035 Score=56.16 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=46.2
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH-----HH--H--H-HHHhc--
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH-----TP--I--K-MLHKY-- 90 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~-----~a--~--~-~l~~~-- 90 (183)
++||+.++| +.|++.| +++.++||+....... ...+. .+|+.-.-+.++++. .| . . .++++
T Consensus 95 ~~~~~~~~L-~~L~~~g----~~l~i~Sn~~~~~~~~-~~~~~-~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~ 167 (211)
T TIGR02247 95 LRPSMMAAI-KTLRAKG----FKTACITNNFPTDHSA-EEALL-PGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGV 167 (211)
T ss_pred cChhHHHHH-HHHHHCC----CeEEEEeCCCCccchh-hhHhh-hhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCC
Confidence 356677777 7777665 8999999986554221 11222 244432234455442 11 1 1 22333
Q ss_pred CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 ~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
....+++||.. .-.+.++.+|+..+
T Consensus 168 ~~~~~l~i~D~~~di~aA~~aG~~~i 193 (211)
T TIGR02247 168 APEECVFLDDLGSNLKPAAALGITTI 193 (211)
T ss_pred CHHHeEEEcCCHHHHHHHHHcCCEEE
Confidence 23456666753 34455678998765
No 95
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.54 E-value=0.00023 Score=60.90 Aligned_cols=69 Identities=20% Similarity=0.356 Sum_probs=54.5
Q ss_pred CCceEEEEecCCeeee----------------------------CCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCC
Q psy17092 4 SPSFGLIFDIDGVLVR----------------------------GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS 55 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~----------------------------g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~ 55 (183)
+..++++||||+|+.. ..+++|++.+++ +.+++.| +.++||||....
T Consensus 99 ~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly-~~l~~~G----~kIf~VSgR~e~ 173 (275)
T TIGR01680 99 HEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNY-NKLVSLG----FKIIFLSGRLKD 173 (275)
T ss_pred CCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHH-HHHHHCC----CEEEEEeCCchh
Confidence 3568999999999871 125699999999 9999888 889999999887
Q ss_pred CHHHHHHHHHHHhCCCCCccceec
Q psy17092 56 LAADKAKQLTEWLGVEVEEDQVVM 79 (183)
Q Consensus 56 ~~~~~~~~L~~~lG~~~~~~~I~t 79 (183)
.++.-.+-|. ..|++. .++++.
T Consensus 174 ~r~aT~~NL~-kaGy~~-~~~LiL 195 (275)
T TIGR01680 174 KQAVTEANLK-KAGYHT-WEKLIL 195 (275)
T ss_pred HHHHHHHHHH-HcCCCC-cceeee
Confidence 7777788887 599973 244443
No 96
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.51 E-value=0.0027 Score=51.64 Aligned_cols=29 Identities=10% Similarity=0.246 Sum_probs=22.7
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCC
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS 55 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~ 55 (183)
.+.||+.++| +.+++.| ++++++||+...
T Consensus 74 ~l~pG~~e~l-~~l~~~g----~~~~IvS~~~~~ 102 (219)
T PRK09552 74 EIREGFHEFV-QFVKENN----IPFYVVSGGMDF 102 (219)
T ss_pred CcCcCHHHHH-HHHHHcC----CeEEEECCCcHH
Confidence 4577888888 8888776 899999987643
No 97
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.50 E-value=0.00079 Score=58.83 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=53.8
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCC-------ccc---------eecc-HHH-
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVE-------EDQ---------VVMS-HTP- 83 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~-------~~~---------I~ts-~~a- 83 (183)
++.||+.+++ +.|++.| +++.++|++...- .+.+.+.+|+.-- .+. ++.+ ..+
T Consensus 181 ~l~pGa~elL-~~Lk~~G----~~~aIvSgg~~~~----~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~ 251 (322)
T PRK11133 181 PLMPGLTELV-LKLQALG----WKVAIASGGFTYF----ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKAD 251 (322)
T ss_pred CCChhHHHHH-HHHHHcC----CEEEEEECCcchh----HHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHH
Confidence 5688998888 9999877 8999999866543 3444446777420 011 1111 122
Q ss_pred -HHHH-Hhc--CCCeEEEEcCh-hHHHHHHHCCCceeeCH
Q psy17092 84 -IKML-HKY--HTKHTLISGQG-PMEEIAKRLGFNKVVTV 118 (183)
Q Consensus 84 -~~~l-~~~--~~k~v~viG~~-~~~~~l~~~G~~~~~t~ 118 (183)
...+ +++ +...++++|.+ .....++.+|+-..+..
T Consensus 252 ~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~nA 291 (322)
T PRK11133 252 TLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAYHA 291 (322)
T ss_pred HHHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEeCC
Confidence 2222 333 33578888965 55666788998776543
No 98
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.50 E-value=0.00023 Score=59.55 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=51.9
Q ss_pred CCceEEEEecCCeeeeC---------------------------CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC
Q psy17092 4 SPSFGLIFDIDGVLVRG---------------------------KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL 56 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g---------------------------~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~ 56 (183)
+..++++||||-|+... .+++|++.+++ +.+++.| +.++|+|+.+...
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~-~~l~~~G----~~Vf~lTGR~e~~ 149 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLY-QKIIELG----IKIFLLSGRWEEL 149 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHH-HHHHHCC----CEEEEEcCCChHH
Confidence 45789999999997752 15799999999 9999988 8899999988776
Q ss_pred HHHHHHHHHHHhCCCC
Q psy17092 57 AADKAKQLTEWLGVEV 72 (183)
Q Consensus 57 ~~~~~~~L~~~lG~~~ 72 (183)
++...+.|. ..|++-
T Consensus 150 r~~T~~nL~-~~G~~~ 164 (229)
T TIGR01675 150 RNATLDNLI-NAGFTG 164 (229)
T ss_pred HHHHHHHHH-HcCCCC
Confidence 666778887 599883
No 99
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.37 E-value=0.0013 Score=65.77 Aligned_cols=95 Identities=16% Similarity=0.259 Sum_probs=54.9
Q ss_pred CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC-CccceeccHH-------HHH---HHHhc--
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV-EEDQVVMSHT-------PIK---MLHKY-- 90 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~-~~~~I~ts~~-------a~~---~l~~~-- 90 (183)
+||+.++| +.|+++| +++.++||+... .....|. .+|+.. ..+.++++.. +-. .++++
T Consensus 163 ~pG~~elL-~~Lk~~G----~~l~IvSn~~~~---~~~~~L~-~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv 233 (1057)
T PLN02919 163 FPGALELI-TQCKNKG----LKVAVASSADRI---KVDANLA-AAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGV 233 (1057)
T ss_pred CccHHHHH-HHHHhCC----CeEEEEeCCcHH---HHHHHHH-HcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCc
Confidence 56666666 7777766 899999995433 2233454 688752 2455655532 111 22333
Q ss_pred CCCeEEEEcCh-hHHHHHHHCCCceee-----CHHHHHhhcCC
Q psy17092 91 HTKHTLISGQG-PMEEIAKRLGFNKVV-----TVDSIRNAHPL 127 (183)
Q Consensus 91 ~~k~v~viG~~-~~~~~l~~~G~~~~~-----t~~~l~~a~p~ 127 (183)
....++++|.. .-.+.++.+|+..+. +.+++..+.+.
T Consensus 234 ~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~ 276 (1057)
T PLN02919 234 PTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPS 276 (1057)
T ss_pred CcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCC
Confidence 34568888854 445667788986542 33455554443
No 100
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.36 E-value=0.00023 Score=56.95 Aligned_cols=50 Identities=30% Similarity=0.507 Sum_probs=37.4
Q ss_pred EEEEecCCeeeeCC--ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHH
Q psy17092 8 GLIFDIDGVLVRGK--QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLT 65 (183)
Q Consensus 8 ~iifDiDGVL~~g~--~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~ 65 (183)
.|+||+||||...+ ++-+.+.++| ++|++.| ++++++|. |+...+...+.
T Consensus 1 li~~D~DgTL~~~~~~~~~~~~~~~l-~~l~~~g----~~~~i~TG---R~~~~~~~~~~ 52 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAHELSPETIEAL-ERLREAG----VKVVLVTG---RSLAEIKELLK 52 (204)
T ss_pred CEEEeCcCCCcCCCCCcCCHHHHHHH-HHHHHCC----CEEEEECC---CCHHHHHHHHH
Confidence 37999999999764 5668899999 9999877 78899875 44544444443
No 101
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.31 E-value=0.0011 Score=52.98 Aligned_cols=86 Identities=19% Similarity=0.233 Sum_probs=49.3
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-------HHH---HHHhc-
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-------PIK---MLHKY- 90 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-------a~~---~l~~~- 90 (183)
.+.||+.++| +.|++.| +++.++||++....... +.+..++.-.-+.+++|.. +.. .++++
T Consensus 84 ~~~~g~~e~L-~~l~~~g----~~~~i~Sn~~~~~~~~~---~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~ 155 (199)
T PRK09456 84 ALRPEVIAIM-HKLREQG----HRVVVLSNTNRLHTTFW---PEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEG 155 (199)
T ss_pred ccCHHHHHHH-HHHHhCC----CcEEEEcCCchhhHHHH---HhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcC
Confidence 3578888888 8888777 89999999764432211 1111233222245555432 221 22333
Q ss_pred -CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 -HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 -~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
....++++|.. .-.+.++.+|+..+
T Consensus 156 ~~p~~~l~vgD~~~di~aA~~aG~~~i 182 (199)
T PRK09456 156 FSAADAVFFDDNADNIEAANALGITSI 182 (199)
T ss_pred CChhHeEEeCCCHHHHHHHHHcCCEEE
Confidence 34567888854 33455678998764
No 102
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.23 E-value=0.0041 Score=50.02 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=44.2
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHH------HH----HHhc--CCCeEEEEcChhHHH--HHHH
Q psy17092 44 VPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPI------KM----LHKY--HTKHTLISGQGPMEE--IAKR 109 (183)
Q Consensus 44 i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~------~~----l~~~--~~k~v~viG~~~~~~--~l~~ 109 (183)
.++.++||+.... ...+|. .+|+.-.-+.|++|...- +. +.+. ....++.||...... -++.
T Consensus 115 ~~l~ilTNg~~~~---~~~~l~-~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~VgD~~~~di~gA~~ 190 (229)
T COG1011 115 YKLGILTNGARPH---QERKLR-QLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGDSLENDILGARA 190 (229)
T ss_pred ccEEEEeCCChHH---HHHHHH-HcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEEECCChhhhhHHHHh
Confidence 5689999964322 234565 699876778888885421 12 2333 346799999865444 5688
Q ss_pred CCCcee
Q psy17092 110 LGFNKV 115 (183)
Q Consensus 110 ~G~~~~ 115 (183)
+|++.+
T Consensus 191 ~G~~~v 196 (229)
T COG1011 191 LGMKTV 196 (229)
T ss_pred cCcEEE
Confidence 999875
No 103
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.20 E-value=0.001 Score=51.87 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.8
Q ss_pred EEEEecCCeeeeCC
Q psy17092 8 GLIFDIDGVLVRGK 21 (183)
Q Consensus 8 ~iifDiDGVL~~g~ 21 (183)
.|+||+||||++.+
T Consensus 3 ~iiFD~dgTL~~~~ 16 (188)
T TIGR01489 3 VVVSDFDGTITLND 16 (188)
T ss_pred EEEEeCCCcccCCC
Confidence 58999999999754
No 104
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00067 Score=54.86 Aligned_cols=100 Identities=27% Similarity=0.395 Sum_probs=66.2
Q ss_pred ceEEEEecCCeeeeCCc----------cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHH-----H-------HHHH
Q psy17092 6 SFGLIFDIDGVLVRGKQ----------VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAA-----D-------KAKQ 63 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~----------~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~-----~-------~~~~ 63 (183)
.+++++|-||||..... .+||+.+++ ..|++.| ..++++||-+|.-+. . +.+.
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al-~~l~~~g----y~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~ 79 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPAL-LKLQRAG----YKLVVVTNQSGIGRGYFTEADFDKLHNKMLKI 79 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHH-HHHHhCC----CeEEEEECCCCccccCccHHHHHHHHHHHHHH
Confidence 57999999999996544 699999999 9999887 899999997765432 2 2334
Q ss_pred HHHHhCCCCCccceec-cHH--------------HHHHHHhcC--CCeEEEEcCh-hHHHHHHHCCCc
Q psy17092 64 LTEWLGVEVEEDQVVM-SHT--------------PIKMLHKYH--TKHTLISGQG-PMEEIAKRLGFN 113 (183)
Q Consensus 64 L~~~lG~~~~~~~I~t-s~~--------------a~~~l~~~~--~k~v~viG~~-~~~~~l~~~G~~ 113 (183)
|. ..|+.+ +.|+. ++. ...+++++. -.+-++||.. ...+.+..+|..
T Consensus 80 l~-~~gv~i--d~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 80 LA-SQGVKI--DGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred HH-HcCCcc--ceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCC
Confidence 44 467543 23322 221 112444543 3678899976 444555667766
No 105
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.16 E-value=0.00052 Score=56.39 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=44.0
Q ss_pred EEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceecc
Q psy17092 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMS 80 (183)
Q Consensus 8 ~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts 80 (183)
.|++|+||||++.+..++...+++ + ++++| ++++++| ||+..++...+. .+++. .++-+++.
T Consensus 1 li~~DlDgTLl~~~~~~~~~~~~~-~-~~~~g----i~~viaT---GR~~~~v~~~~~-~l~l~-~~~~~I~~ 62 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGLASFVELL-R-GSGDA----VGFGIAT---GRSVESAKSRYA-KLNLP-SPDVLIAR 62 (236)
T ss_pred CeEEeccccccCCHHHHHHHHHHH-H-hcCCC----ceEEEEe---CCCHHHHHHHHH-hCCCC-CCCEEEEC
Confidence 378999999998877777766665 6 56665 7888885 788888777666 57775 33334433
No 106
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.10 E-value=0.001 Score=51.27 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=44.5
Q ss_pred eEEEEecCCeeeeCC---------------------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHH
Q psy17092 7 FGLIFDIDGVLVRGK---------------------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAAD 59 (183)
Q Consensus 7 ~~iifDiDGVL~~g~---------------------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~ 59 (183)
..+++|+||||++.. .+.||+.++| +.|+ .+ +++.++||+.....
T Consensus 3 ~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L-~~L~-~~----~~l~I~Ts~~~~~~-- 74 (148)
T smart00577 3 KTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFL-KRAS-EL----FELVVFTAGLRMYA-- 74 (148)
T ss_pred cEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHH-HHHH-hc----cEEEEEeCCcHHHH--
Confidence 578999999999862 3489999999 9997 44 79999998665533
Q ss_pred HHHHHHHHhCCCCC-ccceecc
Q psy17092 60 KAKQLTEWLGVEVE-EDQVVMS 80 (183)
Q Consensus 60 ~~~~L~~~lG~~~~-~~~I~ts 80 (183)
+.+.+.+|+.-. .+.|+++
T Consensus 75 --~~il~~l~~~~~~f~~i~~~ 94 (148)
T smart00577 75 --DPVLDLLDPKKYFGYRRLFR 94 (148)
T ss_pred --HHHHHHhCcCCCEeeeEEEC
Confidence 333335666322 2445544
No 107
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.05 E-value=0.0015 Score=55.23 Aligned_cols=90 Identities=13% Similarity=0.309 Sum_probs=63.7
Q ss_pred ceEEEEecCCeeeeCC---------------------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC-H
Q psy17092 6 SFGLIFDIDGVLVRGK---------------------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL-A 57 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~---------------------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~-~ 57 (183)
..+|+.|||=|+.+.. +++|||.||+ ++..+.| ..++|+||....+ .
T Consensus 79 ~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl-~Yvn~~G----g~ifyiSNR~~~~~~ 153 (274)
T COG2503 79 KKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFL-NYVNSNG----GKIFYISNRDQENEK 153 (274)
T ss_pred CceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHH-HHHHhcC----cEEEEEeccchhccc
Confidence 4599999999998642 6899999999 9999988 5789999988776 4
Q ss_pred HHHHHHHHHHhCCCC-Cccceecc----HHHHH-HHHhcCCCeEEEEcCh
Q psy17092 58 ADKAKQLTEWLGVEV-EEDQVVMS----HTPIK-MLHKYHTKHTLISGQG 101 (183)
Q Consensus 58 ~~~~~~L~~~lG~~~-~~~~I~ts----~~a~~-~l~~~~~k~v~viG~~ 101 (183)
..-++-|. +.|++. ..+.++.- ....+ -.-+..-+.|+.+|..
T Consensus 154 ~~T~~nLk-~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k~~~iVm~vGDN 202 (274)
T COG2503 154 DGTIENLK-SEGLPQVLESHLLLKKDKKSKEVRRQAVEKDYKIVMLVGDN 202 (274)
T ss_pred chhHHHHH-HcCcccccccceEEeeCCCcHHHHHHHHhhccceeeEecCc
Confidence 44567787 699984 44455432 12222 1112233688888864
No 108
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.02 E-value=0.00086 Score=63.88 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=43.1
Q ss_pred ceEEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 6 SFGLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
.+.|++|+||||++.+. ..+.+.++| ++++++| +++++.| ||+...+...+ +.+|++
T Consensus 416 ~KLIfsDLDGTLLd~d~~i~~~t~eAL-~~L~ekG----I~~VIAT---GRs~~~i~~l~-~~Lgl~ 473 (694)
T PRK14502 416 KKIVYTDLDGTLLNPLTYSYSTALDAL-RLLKDKE----LPLVFCS---AKTMGEQDLYR-NELGIK 473 (694)
T ss_pred eeEEEEECcCCCcCCCCccCHHHHHHH-HHHHHcC----CeEEEEe---CCCHHHHHHHH-HHcCCC
Confidence 58899999999998654 567789999 9999888 8888886 55565544433 457763
No 109
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.02 E-value=0.013 Score=47.80 Aligned_cols=96 Identities=11% Similarity=0.143 Sum_probs=61.1
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC--C----c-c-ceecc-------HHH--H
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV--E----E-D-QVVMS-------HTP--I 84 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~--~----~-~-~I~ts-------~~a--~ 84 (183)
++.||+.++| +.+++. .+++++|++... +++.+.+.+|++- . . + ..++. +.. .
T Consensus 68 ~l~pga~ell-~~lk~~-----~~~~IVS~~~~~----~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l 137 (203)
T TIGR02137 68 KPLEGAVEFV-DWLRER-----FQVVILSDTFYE----FSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSV 137 (203)
T ss_pred CCCccHHHHH-HHHHhC-----CeEEEEeCChHH----HHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHH
Confidence 5799999999 999874 388999985433 4555556788861 1 1 1 23331 111 1
Q ss_pred HHHHhcCCCeEEEEcCh-hHHHHHHHCCCceeeCHH-HHHhhcCCC
Q psy17092 85 KMLHKYHTKHTLISGQG-PMEEIAKRLGFNKVVTVD-SIRNAHPLL 128 (183)
Q Consensus 85 ~~l~~~~~k~v~viG~~-~~~~~l~~~G~~~~~t~~-~l~~a~p~l 128 (183)
..+++. +..++++|.+ .....++.+|+...+... .+.+++|.+
T Consensus 138 ~~l~~~-~~~~v~vGDs~nDl~ml~~Ag~~ia~~ak~~~~~~~~~~ 182 (203)
T TIGR02137 138 IAFKSL-YYRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQF 182 (203)
T ss_pred HHHHhh-CCCEEEEeCCHHHHHHHHhCCCCEEecCCHHHHHhCCCC
Confidence 223332 3368888865 556778889998877655 577888877
No 110
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.00 E-value=0.0013 Score=55.66 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=39.8
Q ss_pred eEEEEecCCeeee------CCccCccHHHHHHHHHHh-cCCCccccEEEEeCCCCCCHHHHHHHHHHHhCC
Q psy17092 7 FGLIFDIDGVLVR------GKQVLPGVQDTFMNKLTN-SGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGV 70 (183)
Q Consensus 7 ~~iifDiDGVL~~------g~~~ipgA~e~l~~~l~~-~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~ 70 (183)
.+|+||+||||.. ...+-+...++| +.|.+ .| ++++++| ||+...+.+.+. .+++
T Consensus 15 ~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L-~~L~~~~g----~~v~i~S---GR~~~~~~~~~~-~~~~ 76 (266)
T PRK10187 15 YAWFFDLDGTLAEIKPHPDQVVVPDNILQGL-QLLATAND----GALALIS---GRSMVELDALAK-PYRF 76 (266)
T ss_pred EEEEEecCCCCCCCCCCcccccCCHHHHHHH-HHHHhCCC----CcEEEEe---CCCHHHHHHhcC-cccc
Confidence 5899999999997 345678899998 99987 45 7888886 566666544343 3443
No 111
>KOG2914|consensus
Probab=97.00 E-value=0.0098 Score=49.56 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=56.8
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhC---CCCC--ccceeccH-HHHHH------HHh
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLG---VEVE--EDQVVMSH-TPIKM------LHK 89 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG---~~~~--~~~I~ts~-~a~~~------l~~ 89 (183)
..+|||...+ +.|...| +|+.+.|+.+..+.+.....+...+. ..+. ...+-... .|-.+ +..
T Consensus 92 ~~~PGa~kLv-~~L~~~g----ip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~ 166 (222)
T KOG2914|consen 92 ILMPGAEKLV-NHLKNNG----IPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGV 166 (222)
T ss_pred ccCCcHHHHH-HHHHhCC----CCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCC
Confidence 5789999988 9999877 99999999988888766655543333 2221 12222111 11112 222
Q ss_pred cCCCeEEEEc-ChhHHHHHHHCCCceeeCHH
Q psy17092 90 YHTKHTLISG-QGPMEEIAKRLGFNKVVTVD 119 (183)
Q Consensus 90 ~~~k~v~viG-~~~~~~~l~~~G~~~~~t~~ 119 (183)
....+++|.. +..-.+.+..+|...+...+
T Consensus 167 ~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 167 PPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred CCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 2324455544 45556667799999887666
No 112
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=96.97 E-value=0.0013 Score=52.14 Aligned_cols=42 Identities=21% Similarity=0.517 Sum_probs=36.4
Q ss_pred EEEecCCeeeeCC------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCC
Q psy17092 9 LIFDIDGVLVRGK------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS 55 (183)
Q Consensus 9 iifDiDGVL~~g~------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~ 55 (183)
|++||||||-.++ ...+|+.+++ +.+.++| ..+++||..+-.
T Consensus 2 VvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~-~~i~~~G----Y~ilYlTaRp~~ 55 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLGHILPILGKDWTHPGAAELY-RKIADNG----YKILYLTARPIG 55 (157)
T ss_pred EEEeccCCcCccchhhhhhhccCchhhhhcHHHHH-HHHHHCC----eEEEEECcCcHH
Confidence 7999999999885 4679999999 9999988 899999876643
No 113
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0056 Score=53.69 Aligned_cols=94 Identities=26% Similarity=0.427 Sum_probs=65.8
Q ss_pred eEEEEecCCeeeeCC-------------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHH
Q psy17092 7 FGLIFDIDGVLVRGK-------------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEW 67 (183)
Q Consensus 7 ~~iifDiDGVL~~g~-------------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~ 67 (183)
-++|.|||-|+.+.. +++||...++ +.|.+.|- .|+++|||..--.-..+.+.+. .
T Consensus 162 igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~y-r~l~~~~~---apvfYvSnSPw~~f~~L~efi~-~ 236 (373)
T COG4850 162 IGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWY-RALTNLGD---APVFYVSNSPWQLFPTLQEFIT-N 236 (373)
T ss_pred eeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHH-HHHHhcCC---CCeEEecCChhHhHHHHHHHHh-c
Confidence 479999999998653 6899999999 99987662 6999999965444444444443 3
Q ss_pred hCCCCC----------ccceeccHH-----HHH-HHHhcCCCeEEEEcChhHHH
Q psy17092 68 LGVEVE----------EDQVVMSHT-----PIK-MLHKYHTKHTLISGQGPMEE 105 (183)
Q Consensus 68 lG~~~~----------~~~I~ts~~-----a~~-~l~~~~~k~v~viG~~~~~~ 105 (183)
-+++.- .+.++.|+. +.+ ++++|++++..++|..+.++
T Consensus 237 ~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p~~kfvLVGDsGE~D 290 (373)
T COG4850 237 RNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYPDRKFVLVGDSGEHD 290 (373)
T ss_pred CCCCCCchhHhhcCCcccccccchhhhcccHHHHHHHhCCCceEEEecCCCCcC
Confidence 555421 356666653 334 67889999999999765443
No 114
>PLN02423 phosphomannomutase
Probab=96.93 E-value=0.0022 Score=53.60 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=35.6
Q ss_pred CceEEE-EecCCeeeeCCccC-ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHH
Q psy17092 5 PSFGLI-FDIDGVLVRGKQVL-PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLT 65 (183)
Q Consensus 5 ~~~~ii-fDiDGVL~~g~~~i-pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~ 65 (183)
.++.++ |||||||++++..+ |...++| ++|++ + +.+++.| ||....+.+.+.
T Consensus 5 ~~~~i~~~D~DGTLl~~~~~i~~~~~~ai-~~l~~-~----i~fviaT---GR~~~~~~~~~~ 58 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRKEATPEMLEFM-KELRK-V----VTVGVVG---GSDLSKISEQLG 58 (245)
T ss_pred ccceEEEEeccCCCcCCCCcCCHHHHHHH-HHHHh-C----CEEEEEC---CcCHHHHHHHhc
Confidence 345555 99999999988755 4577888 99984 3 5777775 455555444443
No 115
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.93 E-value=0.0025 Score=53.38 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=45.2
Q ss_pred CCceEEEEecCCeeee-CCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 4 SPSFGLIFDIDGVLVR-GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~-g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
++...|+.|+||||+. +-.+-| |...+ ..|++.| .|++++ |++|+.+.. .|.+.+|++
T Consensus 5 ~~~~lIFtDlD~TLl~~~ye~~p-A~pv~-~el~d~G----~~Vi~~---SSKT~aE~~-~l~~~l~v~ 63 (274)
T COG3769 5 QMPLLIFTDLDGTLLPHSYEWQP-AAPVL-LELKDAG----VPVILC---SSKTRAEML-YLQKSLGVQ 63 (274)
T ss_pred ccceEEEEcccCcccCCCCCCCc-cchHH-HHHHHcC----CeEEEe---ccchHHHHH-HHHHhcCCC
Confidence 4568899999999997 555444 66777 8999888 898887 568888854 467788887
No 116
>PRK08238 hypothetical protein; Validated
Probab=96.92 E-value=0.0087 Score=55.05 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=48.0
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceecc---------HHHHHHHHhcCCC
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMS---------HTPIKMLHKYHTK 93 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts---------~~a~~~l~~~~~k 93 (183)
..|++.+.+ +.++++| .++.++||.... +++.+.+.+|+ .+.++.+ ..+..+.+.+..+
T Consensus 73 ~~pga~e~L-~~lk~~G----~~v~LaTas~~~----~a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~~~l~~~l~~~ 140 (479)
T PRK08238 73 YNEEVLDYL-RAERAAG----RKLVLATASDER----LAQAVAAHLGL---FDGVFASDGTTNLKGAAKAAALVEAFGER 140 (479)
T ss_pred CChhHHHHH-HHHHHCC----CEEEEEeCCCHH----HHHHHHHHcCC---CCEEEeCCCccccCCchHHHHHHHHhCcc
Confidence 468999999 9999888 899999985433 45555556786 1233322 1222233333333
Q ss_pred eEEEEcC-hhHHHHHHHCCCceeeCHH
Q psy17092 94 HTLISGQ-GPMEEIAKRLGFNKVVTVD 119 (183)
Q Consensus 94 ~v~viG~-~~~~~~l~~~G~~~~~t~~ 119 (183)
.+..+|. ......++.+|-...++.+
T Consensus 141 ~~~yvGDS~~Dlp~~~~A~~av~Vn~~ 167 (479)
T PRK08238 141 GFDYAGNSAADLPVWAAARRAIVVGAS 167 (479)
T ss_pred CeeEecCCHHHHHHHHhCCCeEEECCC
Confidence 3444564 3444555666654444433
No 117
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=96.90 E-value=0.0014 Score=54.36 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=40.1
Q ss_pred EEEEecCCeeee---CC-ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 8 GLIFDIDGVLVR---GK-QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 8 ~iifDiDGVL~~---g~-~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
.|++|+||||.+ ++ +..|...+++ ++++++| ++++++ |||+..++...+. .+++.
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i-~~~~~~g----i~fv~a---TGR~~~~~~~~~~-~~~~~ 61 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALL-EDHRGED----SLLVYS---TGRSPHSYKELQK-QKPLL 61 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHH-HHhhccC----ceEEEE---cCCCHHHHHHHHh-cCCCC
Confidence 588999999995 44 4567777877 8888777 777777 4777777665544 57764
No 118
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=96.67 E-value=0.0039 Score=49.49 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=25.4
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+.|++.+++ +.+++.| .+++++|++... +++.+.+.+|++
T Consensus 88 ~~~~~~~~l-~~l~~~g----~~v~ivS~s~~~----~v~~~~~~lg~~ 127 (202)
T TIGR01490 88 LYPEARDLI-RWHKAEG----HTIVLVSASLTI----LVKPLARILGID 127 (202)
T ss_pred ccHHHHHHH-HHHHHCC----CEEEEEeCCcHH----HHHHHHHHcCCc
Confidence 467777777 7777666 788888874432 344444456764
No 119
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.53 E-value=0.0031 Score=50.23 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=25.0
Q ss_pred CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+||+.++| +.|++. +++.++||+.... ++.+.+.+|+.
T Consensus 70 ~pg~~e~L-~~L~~~-----~~~~IvS~~~~~~----~~~~l~~~gl~ 107 (205)
T PRK13582 70 LPGAVEFL-DWLRER-----FQVVILSDTFYEF----AGPLMRQLGWP 107 (205)
T ss_pred CCCHHHHH-HHHHhc-----CCEEEEeCCcHHH----HHHHHHHcCCc
Confidence 57888888 888753 5888999866543 33333357764
No 120
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=96.50 E-value=0.0064 Score=47.02 Aligned_cols=14 Identities=50% Similarity=0.838 Sum_probs=11.4
Q ss_pred EEEecCCeeeeCCc
Q psy17092 9 LIFDIDGVLVRGKQ 22 (183)
Q Consensus 9 iifDiDGVL~~g~~ 22 (183)
++||+||||...+.
T Consensus 2 ~~fD~DgTl~~~~s 15 (177)
T TIGR01488 2 AIFDFDGTLTRQDS 15 (177)
T ss_pred EEecCccccccchh
Confidence 78999999997653
No 121
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.47 E-value=0.0025 Score=49.19 Aligned_cols=53 Identities=26% Similarity=0.463 Sum_probs=35.6
Q ss_pred eEEEEecCCeeeeCCc--------------------cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHH
Q psy17092 7 FGLIFDIDGVLVRGKQ--------------------VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTE 66 (183)
Q Consensus 7 ~~iifDiDGVL~~g~~--------------------~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~ 66 (183)
++++||+||||++... .=||+.++| +.+.+. ..+++.|.++ +.++..+.+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL-~~l~~~-----~ev~i~T~~~----~~ya~~v~~ 70 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFL-EELSKH-----YEVVIWTSAS----EEYAEPVLD 70 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHH-HHHHHH-----CEEEEE-SS-----HHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHH-HHHHHh-----ceEEEEEeeh----hhhhhHHHH
Confidence 5799999999997542 358999999 988653 6888998765 334555444
Q ss_pred HhC
Q psy17092 67 WLG 69 (183)
Q Consensus 67 ~lG 69 (183)
.+.
T Consensus 71 ~ld 73 (159)
T PF03031_consen 71 ALD 73 (159)
T ss_dssp HHT
T ss_pred hhh
Confidence 455
No 122
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=96.37 E-value=0.0096 Score=48.99 Aligned_cols=90 Identities=14% Similarity=0.287 Sum_probs=57.2
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCC-------ccceeccH----------HH-
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVE-------EDQVVMSH----------TP- 83 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~-------~~~I~ts~----------~a- 83 (183)
+..|||.+.+ +.+++.| ..++++|-+ ...+++.+.+.+|++-. .+.++|.. ..
T Consensus 77 ~l~~ga~elv-~~lk~~G----~~v~iiSgg----~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~ 147 (212)
T COG0560 77 RLTPGAEELV-AALKAAG----AKVVIISGG----FTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAK 147 (212)
T ss_pred cCCccHHHHH-HHHHHCC----CEEEEEcCC----hHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHH
Confidence 4589999998 9999988 788999852 33578888889999621 11223321 11
Q ss_pred -HH-HHHhc--CCCeEEEEcCh-hHHHHHHHCCCceeeCHHH
Q psy17092 84 -IK-MLHKY--HTKHTLISGQG-PMEEIAKRLGFNKVVTVDS 120 (183)
Q Consensus 84 -~~-~l~~~--~~k~v~viG~~-~~~~~l~~~G~~~~~t~~~ 120 (183)
.. ++.++ ..+.++.+|.+ .....++.+|+...++.+.
T Consensus 148 ~l~~~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~~ 189 (212)
T COG0560 148 ALRELAAELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPKP 189 (212)
T ss_pred HHHHHHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcCH
Confidence 11 22222 23467777754 5566677788877776654
No 123
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.35 E-value=0.0024 Score=54.52 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=25.1
Q ss_pred CCceEEEEecCCeeeeCC-ccCccHHHHHHHHHHhcC
Q psy17092 4 SPSFGLIFDIDGVLVRGK-QVLPGVQDTFMNKLTNSG 39 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~-~~ipgA~e~l~~~l~~~g 39 (183)
..+++||||+||||+++. ..+..++. +.+++.|
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~~~~a~~---~~l~~~G 71 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDGHRVAFN---DAFKEFG 71 (286)
T ss_pred cCCcEEEEeCceeEEccccHHHHHHHH---HHHHHcC
Confidence 457999999999999998 76666655 4555544
No 124
>KOG2961|consensus
Probab=96.34 E-value=0.028 Score=44.67 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=74.2
Q ss_pred CceEEEEecCCeeee--CCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC----HHHHHHHHHHHhCCCCCcccee
Q psy17092 5 PSFGLIFDIDGVLVR--GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL----AADKAKQLTEWLGVEVEEDQVV 78 (183)
Q Consensus 5 ~~~~iifDiDGVL~~--g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~----~~~~~~~L~~~lG~~~~~~~I~ 78 (183)
.+++++||-|.+|.- +...-|.-..-+ +.+++.-|+ +.+++++|..|.+ -.+.++.|....|+++-.....
T Consensus 42 ~ikavVlDKDNcit~P~~~~Iwp~~l~~i-e~~~~vyge--k~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~k 118 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSLAIWPPLLPSI-ERCKAVYGE--KDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVK 118 (190)
T ss_pred CceEEEEcCCCeeeCCcccccCchhHHHH-HHHHHHhCc--ccEEEEecCcCccccCCchHHHHHHHHhhCCceEeeccc
Confidence 689999999999984 444555555555 777754333 6799999988873 3456788888999997666665
Q ss_pred ccHHHHHHHHh-c------CCCeEEEEcChhHHHHH--HHCCCceeeCH
Q psy17092 79 MSHTPIKMLHK-Y------HTKHTLISGQGPMEEIA--KRLGFNKVVTV 118 (183)
Q Consensus 79 ts~~a~~~l~~-~------~~k~v~viG~~~~~~~l--~~~G~~~~~t~ 118 (183)
.++-.+..+.. + ..+.+.++|...+.+++ ...|+-.+.+-
T Consensus 119 KP~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~ 167 (190)
T KOG2961|consen 119 KPACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTE 167 (190)
T ss_pred CCCccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEec
Confidence 55433333321 1 23568999999888875 23555444443
No 125
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=96.33 E-value=0.0081 Score=48.02 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=36.1
Q ss_pred ceEEEEecCCeeeeCC--------------------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHH
Q psy17092 6 SFGLIFDIDGVLVRGK--------------------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAAD 59 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~--------------------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~ 59 (183)
.+.|+||+|+|||.-. ..+|++.++| +.|++.| +++.+-|-+. .-+
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL-~~L~~~g----v~lavASRt~---~P~ 74 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEIL-QELKERG----VKLAVASRTD---EPD 74 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHH-HHHHHCT------EEEEE--S----HH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHH-HHHHHCC----CEEEEEECCC---ChH
Confidence 3789999999999411 3589999999 9999977 7888877432 224
Q ss_pred HHHHHHHHhCCC
Q psy17092 60 KAKQLTEWLGVE 71 (183)
Q Consensus 60 ~~~~L~~~lG~~ 71 (183)
.+.++.+.|++.
T Consensus 75 ~A~~~L~~l~i~ 86 (169)
T PF12689_consen 75 WARELLKLLEID 86 (169)
T ss_dssp HHHHHHHHTT-C
T ss_pred HHHHHHHhcCCC
Confidence 556655578887
No 126
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.18 E-value=0.0038 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=18.8
Q ss_pred eEEEEecCCeeeeCCccCccHHH
Q psy17092 7 FGLIFDIDGVLVRGKQVLPGVQD 29 (183)
Q Consensus 7 ~~iifDiDGVL~~g~~~ipgA~e 29 (183)
++|+||+||||++....+..+..
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~ 23 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYC 23 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHH
Confidence 57999999999998876666555
No 127
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.05 E-value=0.0035 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=17.7
Q ss_pred EEEEecCCeeeeCCccCccHHH
Q psy17092 8 GLIFDIDGVLVRGKQVLPGVQD 29 (183)
Q Consensus 8 ~iifDiDGVL~~g~~~ipgA~e 29 (183)
+|+|||||||+++...+-.+..
T Consensus 2 ~viFD~DGTLiDs~~~~~~a~~ 23 (197)
T TIGR01548 2 ALVLDMDGVMADVSQSYRRAII 23 (197)
T ss_pred ceEEecCceEEechHHHHHHHH
Confidence 6899999999999876554444
No 128
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.96 E-value=0.0032 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=21.3
Q ss_pred CCceEEEEecCCeeeeCCccCccHHH
Q psy17092 4 SPSFGLIFDIDGVLVRGKQVLPGVQD 29 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~~ipgA~e 29 (183)
+++++|+||+|||||+....+..+.+
T Consensus 8 ~~~k~iiFDlDGTL~D~~~~~~~a~~ 33 (238)
T PRK10748 8 GRISALTFDLDDTLYDNRPVILRTEQ 33 (238)
T ss_pred CCceeEEEcCcccccCChHHHHHHHH
Confidence 45799999999999999877666555
No 129
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=95.82 E-value=0.0087 Score=47.53 Aligned_cols=97 Identities=22% Similarity=0.343 Sum_probs=60.9
Q ss_pred CCCceEEEEecCCeeeeCCcc-------------CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhC
Q psy17092 3 LSPSFGLIFDIDGVLVRGKQV-------------LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLG 69 (183)
Q Consensus 3 ~~~~~~iifDiDGVL~~g~~~-------------ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG 69 (183)
+.+++.++||+||||.+|.=- ..|. .| +.|.+.| +.+.++|...+..- ..+.. .+|
T Consensus 5 a~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~--Gi-k~l~~~G----i~vAIITGr~s~iv---e~Ra~-~LG 73 (170)
T COG1778 5 AKNIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGH--GI-KLLLKSG----IKVAIITGRDSPIV---EKRAK-DLG 73 (170)
T ss_pred hhhceEEEEeccceeecCeEEEcCCCceeeeeeccCcH--HH-HHHHHcC----CeEEEEeCCCCHHH---HHHHH-HcC
Confidence 457899999999999987522 2332 13 7777766 89999986554433 34454 699
Q ss_pred CCCCccceeccHH----HHH-HHHhc--CCCeEEEEcCh-hHHHHHHHCCCce
Q psy17092 70 VEVEEDQVVMSHT----PIK-MLHKY--HTKHTLISGQG-PMEEIAKRLGFNK 114 (183)
Q Consensus 70 ~~~~~~~I~ts~~----a~~-~l~~~--~~k~v~viG~~-~~~~~l~~~G~~~ 114 (183)
++ .+++... +.. +++++ ....+..+|.. ....+++.+|+..
T Consensus 74 I~----~~~qG~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~ 122 (170)
T COG1778 74 IK----HLYQGISDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSV 122 (170)
T ss_pred Cc----eeeechHhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCcc
Confidence 98 5655432 222 33443 23456667764 3456678888754
No 130
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=95.79 E-value=0.0051 Score=49.31 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=18.9
Q ss_pred ceEEEEecCCeeeeCCccCccHHH
Q psy17092 6 SFGLIFDIDGVLVRGKQVLPGVQD 29 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~ipgA~e 29 (183)
+++|+||+||||+++...+..+..
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~ 24 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALR 24 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHH
Confidence 479999999999998875544433
No 131
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.52 E-value=0.08 Score=42.00 Aligned_cols=84 Identities=23% Similarity=0.221 Sum_probs=56.5
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-----HH----H-HHHhc-
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-----PI----K-MLHKY- 90 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-----a~----~-~l~~~- 90 (183)
.++||+.++| +.|++.| +++.++||+... ....+. .+|+.-..+.++.+.. |. . .++++
T Consensus 105 ~~~~g~~~~l-~~L~~~g----~~~~i~Sn~~~~----~~~~l~-~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~ 174 (203)
T TIGR02252 105 QVYPDAIKLL-KDLRERG----LILGVISNFDSR----LRGLLE-ALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAG 174 (203)
T ss_pred eeCcCHHHHH-HHHHHCC----CEEEEEeCCchh----HHHHHH-HCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcC
Confidence 5799999999 9999877 899999986532 234565 6888644556665422 21 1 22333
Q ss_pred -CCCeEEEEcChh--HHHHHHHCCCcee
Q psy17092 91 -HTKHTLISGQGP--MEEIAKRLGFNKV 115 (183)
Q Consensus 91 -~~k~v~viG~~~--~~~~l~~~G~~~~ 115 (183)
....+++||... -.+.++.+|++.+
T Consensus 175 ~~~~~~~~IgD~~~~Di~~A~~aG~~~i 202 (203)
T TIGR02252 175 ISPEEALHIGDSLRNDYQGARAAGWRAL 202 (203)
T ss_pred CChhHEEEECCCchHHHHHHHHcCCeee
Confidence 346799999763 4566788998764
No 132
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=95.40 E-value=0.14 Score=39.35 Aligned_cols=83 Identities=28% Similarity=0.329 Sum_probs=52.2
Q ss_pred cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH-----H--H--HH-HHHhc--
Q psy17092 23 VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH-----T--P--IK-MLHKY-- 90 (183)
Q Consensus 23 ~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~-----~--a--~~-~l~~~-- 90 (183)
+.||+.++| +.|++.| +++.++||+.... . ..+. .+|+.-..+.++++. . + .. .++++
T Consensus 86 ~~~g~~~~l-~~l~~~g----~~~~i~Tn~~~~~-~---~~~~-~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~ 155 (183)
T TIGR01509 86 PLPGVEPLL-EALRARG----KKLALLTNSPRDH-A---VLVQ-ELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGL 155 (183)
T ss_pred cCcCHHHHH-HHHHHCC----CeEEEEeCCchHH-H---HHHH-hcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCC
Confidence 469999999 9999877 8999999977554 2 2222 377753345555431 1 1 12 22333
Q ss_pred CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 ~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
....++++|.. .-.+.++.+|+..+
T Consensus 156 ~~~~~~~vgD~~~di~aA~~~G~~~i 181 (183)
T TIGR01509 156 KPEECLFVDDSPAGIEAAKAAGMHTV 181 (183)
T ss_pred CcceEEEEcCCHHHHHHHHHcCCEEE
Confidence 34678888864 33455678998765
No 133
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=95.39 E-value=0.027 Score=44.25 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=38.9
Q ss_pred eEEEEecCCeeeeCCcc-------------------------CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHH
Q psy17092 7 FGLIFDIDGVLVRGKQV-------------------------LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKA 61 (183)
Q Consensus 7 ~~iifDiDGVL~~g~~~-------------------------ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~ 61 (183)
+.+++|+|+||+++... =||+.|+| +.|.+. ..+++.|+++ +.++
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL-~~l~~~-----yei~I~Ts~~----~~yA 71 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFL-ERVSKW-----YELVIFTASL----EEYA 71 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHH-HHHHhc-----CEEEEEcCCc----HHHH
Confidence 57999999999976321 27889999 888753 5788898765 3355
Q ss_pred HHHHHHhCCC
Q psy17092 62 KQLTEWLGVE 71 (183)
Q Consensus 62 ~~L~~~lG~~ 71 (183)
+.+.+.++..
T Consensus 72 ~~il~~ldp~ 81 (162)
T TIGR02251 72 DPVLDILDRG 81 (162)
T ss_pred HHHHHHHCcC
Confidence 5555566654
No 134
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=95.37 E-value=0.038 Score=43.34 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=15.3
Q ss_pred CCCceEEEEecCCeeeeCC
Q psy17092 3 LSPSFGLIFDIDGVLVRGK 21 (183)
Q Consensus 3 ~~~~~~iifDiDGVL~~g~ 21 (183)
......+++|+|.||+++.
T Consensus 3 ~~~kl~LVLDLDeTLihs~ 21 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTT 21 (156)
T ss_pred cCCceEEEEeCCCCccccc
Confidence 3456789999999999864
No 135
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=95.35 E-value=0.051 Score=44.40 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=13.7
Q ss_pred CceEEEEecCCeeeeCC
Q psy17092 5 PSFGLIFDIDGVLVRGK 21 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~ 21 (183)
..+..+||.||||++++
T Consensus 4 ~~~la~FDfDgTLt~~d 20 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQD 20 (210)
T ss_pred cCcEEEEcCCCCCccCc
Confidence 34678999999999876
No 136
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=95.20 E-value=0.026 Score=45.71 Aligned_cols=27 Identities=11% Similarity=0.340 Sum_probs=22.6
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCC
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAG 53 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns 53 (183)
.+.||+.+++ +.+++.| +++.++|++.
T Consensus 70 ~l~pg~~e~l-~~l~~~g----~~~~IvS~~~ 96 (214)
T TIGR03333 70 EIREGFREFV-AFINEHG----IPFYVISGGM 96 (214)
T ss_pred cccccHHHHH-HHHHHCC----CeEEEECCCc
Confidence 5688888888 8888776 8999999864
No 137
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=95.14 E-value=0.03 Score=53.77 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=37.8
Q ss_pred CCceEEEEecCCeeeeC------CccCccHHHHHHHHHHh-cCCCccccEEEEeCCCCCCHHHHHHHH
Q psy17092 4 SPSFGLIFDIDGVLVRG------KQVLPGVQDTFMNKLTN-SGGRFVVPTVFVTNAGNSLAADKAKQL 64 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g------~~~ipgA~e~l~~~l~~-~ggk~~i~~~~lTNns~~~~~~~~~~L 64 (183)
...+.|+||+||||... ..+-+.+.++| +.|.+ .| +.++++| ||+...+.+.+
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L-~~L~~d~g----~~V~ivS---GR~~~~l~~~~ 549 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLL-RRLAADPN----TDVAIIS---GRDRDTLERWF 549 (726)
T ss_pred ccceEEEEecCccccCCCCCcccCCCCHHHHHHH-HHHHcCCC----CeEEEEe---CCCHHHHHHHh
Confidence 35689999999999963 23457788888 99987 35 6788885 56666544333
No 138
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=95.13 E-value=0.01 Score=46.58 Aligned_cols=22 Identities=18% Similarity=0.010 Sum_probs=17.2
Q ss_pred eEEEEecCCeeeeCCccCccHH
Q psy17092 7 FGLIFDIDGVLVRGKQVLPGVQ 28 (183)
Q Consensus 7 ~~iifDiDGVL~~g~~~ipgA~ 28 (183)
++|+||+||||+++...+-.+.
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~ 22 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQI 22 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHH
Confidence 4799999999999876554444
No 139
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=94.84 E-value=0.16 Score=39.44 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=54.3
Q ss_pred CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-------HH--H-HHHhc
Q psy17092 21 KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-------PI--K-MLHKY 90 (183)
Q Consensus 21 ~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-------a~--~-~l~~~ 90 (183)
..++||+.++| +.|++.| +++.++||+.. . ...|. .+|+.-.-+.++++.. +. . .++++
T Consensus 86 ~~~~pg~~~~L-~~L~~~g----~~~~i~s~~~~--~---~~~l~-~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~ 154 (185)
T TIGR01990 86 ADVLPGIKNLL-DDLKKNN----IKIALASASKN--A---PTVLE-KLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGL 154 (185)
T ss_pred cccCccHHHHH-HHHHHCC----CeEEEEeCCcc--H---HHHHH-hcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHc
Confidence 36899999999 9999877 89999998532 2 13455 6887644456665532 11 1 22333
Q ss_pred --CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 91 --HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 --~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
..+.+++||.. .-.+.++.+|+..+
T Consensus 155 ~~~~~~~v~vgD~~~di~aA~~aG~~~i 182 (185)
T TIGR01990 155 GVSPSECIGIEDAQAGIEAIKAAGMFAV 182 (185)
T ss_pred CCCHHHeEEEecCHHHHHHHHHcCCEEE
Confidence 33568888854 44555678898754
No 140
>PLN03017 trehalose-phosphatase
Probab=94.71 E-value=0.045 Score=48.87 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=34.4
Q ss_pred ceEEEEecCCeee---e-CC--ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHH
Q psy17092 6 SFGLIFDIDGVLV---R-GK--QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKA 61 (183)
Q Consensus 6 ~~~iifDiDGVL~---~-g~--~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~ 61 (183)
.-++++|+||||. . .+ .+-++..++| ++|. .+ ++++++| ||+...+.
T Consensus 111 ~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL-~~La-~~----~~vaIvS---GR~~~~l~ 163 (366)
T PLN03017 111 QIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTV-KKLA-KC----FPTAIVT---GRCIDKVY 163 (366)
T ss_pred CeEEEEecCCcCcCCcCCcccccCCHHHHHHH-HHHh-cC----CcEEEEe---CCCHHHHH
Confidence 4578899999999 3 33 4677888888 9998 45 6888886 56655544
No 141
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=94.69 E-value=0.032 Score=46.69 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=36.8
Q ss_pred ceEEEEecCCeeeeCCccCccHHHHHHHHHH-hcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceecc
Q psy17092 6 SFGLIFDIDGVLVRGKQVLPGVQDTFMNKLT-NSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMS 80 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~-~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts 80 (183)
...|++|+||||+.+... +.+.+-+.++ ... -++.++++ +||+.+.+.+.+. ..+++ .|+-++++
T Consensus 2 ~~ll~sDlD~Tl~~~~~~---~~~~l~~~l~~~~~--~~~~~v~~---TGRs~~~~~~~~~-~~~l~-~Pd~~I~s 67 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDDE---ALARLEELLEQQAR--PEILFVYV---TGRSLESVLRLLR-EYNLP-QPDYIITS 67 (247)
T ss_dssp SEEEEEETBTTTBHCHHH---HHHHHHHHHHHHHC--CGEEEEEE----SS-HHHHHHHHH-HCT-E-E-SEEEET
T ss_pred CEEEEEECCCCCcCCCHH---HHHHHHHHHHHhhC--CCceEEEE---CCCCHHHHHHHHH-hCCCC-CCCEEEec
Confidence 367999999999944332 2222303333 111 12555666 5788888887776 57775 46777766
No 142
>COG4996 Predicted phosphatase [General function prediction only]
Probab=94.57 E-value=0.081 Score=41.12 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=40.0
Q ss_pred eEEEEecCCeeeeCC-------------------------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHH
Q psy17092 7 FGLIFDIDGVLVRGK-------------------------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKA 61 (183)
Q Consensus 7 ~~iifDiDGVL~~g~-------------------------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~ 61 (183)
.+|+||.|||||+-. ...|...+++ +.++..| .++|-.|=--+..-.
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l-~warnsG-------~i~~~~sWN~~~kA~ 72 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETL-KWARNSG-------YILGLASWNFEDKAI 72 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHH-HHHHhCC-------cEEEEeecCchHHHH
Confidence 368999999999642 3577888988 8888877 456554444444445
Q ss_pred HHHHHHhCCCC
Q psy17092 62 KQLTEWLGVEV 72 (183)
Q Consensus 62 ~~L~~~lG~~~ 72 (183)
+.|+ .+|+..
T Consensus 73 ~aLr-al~~~~ 82 (164)
T COG4996 73 KALR-ALDLLQ 82 (164)
T ss_pred HHHH-Hhchhh
Confidence 6676 788763
No 143
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=94.53 E-value=0.012 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=16.9
Q ss_pred EEEEecCCeeeeCCccCccHHH
Q psy17092 8 GLIFDIDGVLVRGKQVLPGVQD 29 (183)
Q Consensus 8 ~iifDiDGVL~~g~~~ipgA~e 29 (183)
+++||+||||++....+-.+.+
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~ 22 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLA 22 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHH
Confidence 5899999999998875444433
No 144
>PLN02382 probable sucrose-phosphatase
Probab=94.51 E-value=0.1 Score=47.07 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=38.2
Q ss_pred CceEEEEecCCeeeeCC--ccCc-cHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceecc
Q psy17092 5 PSFGLIFDIDGVLVRGK--QVLP-GVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMS 80 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~--~~ip-gA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts 80 (183)
+.-.|++||||||+++. ..++ -..+++++++.++| +.+++. |||+...+.+.+ +.+++. .++-++++
T Consensus 8 ~~~lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~~~~g----i~fv~a---TGR~~~~~~~l~-~~~~l~-~p~~~I~~ 77 (413)
T PLN02382 8 PRLMIVSDLDHTMVDHHDPENLSLLRFNALWEAEYRHD----SLLVFS---TGRSPTLYKELR-KEKPLL-TPDITIMS 77 (413)
T ss_pred CCEEEEEcCCCcCcCCCCccchhHHHHHHHHHHhhcCC----eeEEEE---cCCCHHHHHHHH-HhCCCC-CCCEEEEc
Confidence 34568889999999763 2222 22222225556555 666666 578877765444 356654 34434433
No 145
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=94.21 E-value=0.39 Score=44.94 Aligned_cols=97 Identities=18% Similarity=0.329 Sum_probs=63.1
Q ss_pred ceEEEEecCCeee----eCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH
Q psy17092 6 SFGLIFDIDGVLV----RGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH 81 (183)
Q Consensus 6 ~~~iifDiDGVL~----~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~ 81 (183)
...+.++.||++. -..++.|++.++| +.|++.| +++.++||.... .++.+.+.+|+++- .++....
T Consensus 385 ~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i-~~Lk~~G----i~v~ilSgd~~~----~a~~ia~~lgi~~~-~~~~p~~ 454 (562)
T TIGR01511 385 STSVLVAVNGELAGVFALEDQLRPEAKEVI-QALKRRG----IEPVMLTGDNRK----TAKAVAKELGINVR-AEVLPDD 454 (562)
T ss_pred CEEEEEEECCEEEEEEEecccccHHHHHHH-HHHHHcC----CeEEEEcCCCHH----HHHHHHHHcCCcEE-ccCChHH
Confidence 4567888888775 4678999999999 9999887 899999876543 35555667888621 1111111
Q ss_pred HHHHHHHh--cCCCeEEEEcCh-hHHHHHHHCCCc
Q psy17092 82 TPIKMLHK--YHTKHTLISGQG-PMEEIAKRLGFN 113 (183)
Q Consensus 82 ~a~~~l~~--~~~k~v~viG~~-~~~~~l~~~G~~ 113 (183)
. ...+++ .+++.++++|.+ .....++.+|+-
T Consensus 455 K-~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vg 488 (562)
T TIGR01511 455 K-AALIKELQEKGRVVAMVGDGINDAPALAQADVG 488 (562)
T ss_pred H-HHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEE
Confidence 1 122222 245789999976 445556666653
No 146
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=93.98 E-value=0.19 Score=39.49 Aligned_cols=76 Identities=18% Similarity=0.441 Sum_probs=49.2
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH--HH-----HHHH
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH--TP-----IKML 87 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~--~a-----~~~l 87 (183)
|.+....++.|++.++| +.|++.| +++.++|+....+ +..+.+.+|+. ...++... .| ..++
T Consensus 120 ~~~~~~d~~~~~~~~~l-~~L~~~G----i~~~i~TGD~~~~----a~~~~~~lgi~--~~~v~a~~~~kP~~k~~~~~i 188 (215)
T PF00702_consen 120 GLFGLRDPLRPGAKEAL-QELKEAG----IKVAILTGDNEST----ASAIAKQLGIF--DSIVFARVIGKPEPKIFLRII 188 (215)
T ss_dssp EEEEEEEEBHTTHHHHH-HHHHHTT----EEEEEEESSEHHH----HHHHHHHTTSC--SEEEEESHETTTHHHHHHHHH
T ss_pred EEEeecCcchhhhhhhh-hhhhccC----cceeeeecccccc----ccccccccccc--cccccccccccccchhHHHHH
Confidence 34445678899999999 9999988 8999999654433 33444568883 11233333 22 2334
Q ss_pred Hhc--CCCeEEEEcCh
Q psy17092 88 HKY--HTKHTLISGQG 101 (183)
Q Consensus 88 ~~~--~~k~v~viG~~ 101 (183)
+.+ +...|+++|.+
T Consensus 189 ~~l~~~~~~v~~vGDg 204 (215)
T PF00702_consen 189 KELQVKPGEVAMVGDG 204 (215)
T ss_dssp HHHTCTGGGEEEEESS
T ss_pred HHHhcCCCEEEEEccC
Confidence 433 34689999976
No 147
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=93.80 E-value=0.12 Score=50.77 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=36.9
Q ss_pred CceEEEEecCCeeeeCC----ccCccHHHHHHHHHH-hcCCCccccEEEEeCCCCCCHHHHHHHH
Q psy17092 5 PSFGLIFDIDGVLVRGK----QVLPGVQDTFMNKLT-NSGGRFVVPTVFVTNAGNSLAADKAKQL 64 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~----~~ipgA~e~l~~~l~-~~ggk~~i~~~~lTNns~~~~~~~~~~L 64 (183)
+.++|++|+||||.... .+-|+..++| +.|. +.+ ..++++| ||+..++.+.+
T Consensus 595 ~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L-~~L~~d~g----~~VaIvS---GR~~~~L~~~f 651 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASIDKSPSSKSIDIL-NTLCRDKN----NMVFIVS---ARSRKTLADWF 651 (854)
T ss_pred cCeEEEEecCCcccCCccccCCCCHHHHHHH-HHHHhcCC----CEEEEEe---CCCHHHHHHHh
Confidence 46899999999999443 4567788888 8874 444 5677774 67776654444
No 148
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=93.73 E-value=0.13 Score=42.65 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=30.6
Q ss_pred CceEEEEecCCeeeeCC------ccCccHHHHHHHHHHhcCCCccccEEEEeCC
Q psy17092 5 PSFGLIFDIDGVLVRGK------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNA 52 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNn 52 (183)
+..+++||.||||..-. .+-|++.++| +.|.+..+ ..++++|..
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L-~~L~~~~~---~~v~ivSGR 51 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPDAAVVSDRLLTIL-QKLAARPH---NAIWIISGR 51 (244)
T ss_pred CcEEEEEecCccccCCcCCCcccCCCHHHHHHH-HHHHhCCC---CeEEEEECC
Confidence 34689999999998532 2457788888 88876431 456788654
No 149
>PLN02151 trehalose-phosphatase
Probab=93.66 E-value=0.13 Score=45.81 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=34.8
Q ss_pred ceEEEEecCCeee----eCC--ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHH
Q psy17092 6 SFGLIFDIDGVLV----RGK--QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAK 62 (183)
Q Consensus 6 ~~~iifDiDGVL~----~g~--~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~ 62 (183)
.-++++|.||||. +-. .+-|+..++| +.|.+ + .+++++| ||+...+.+
T Consensus 98 ~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL-~~La~-~----~~vaIvS---GR~~~~l~~ 151 (354)
T PLN02151 98 QIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTV-RKLAK-C----FPTAIVS---GRCREKVSS 151 (354)
T ss_pred ceEEEEecCccCCCCCCCcccccCCHHHHHHH-HHHhc-C----CCEEEEE---CCCHHHHHH
Confidence 3578999999999 332 4677788888 88873 3 5888885 666665444
No 150
>PLN02811 hydrolase
Probab=93.06 E-value=0.63 Score=37.64 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=52.0
Q ss_pred CCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH--H-------HH---HHH
Q psy17092 20 GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH--T-------PI---KML 87 (183)
Q Consensus 20 g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~--~-------a~---~~l 87 (183)
...++||+.++| +.|++.| +++.++||++.... ..++.+..|+.--.+.++++. . +. ..+
T Consensus 76 ~~~l~~gv~e~l-~~L~~~g----~~~~i~S~~~~~~~---~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~ 147 (220)
T PLN02811 76 TSDLMPGAERLV-RHLHAKG----IPIAIATGSHKRHF---DLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAA 147 (220)
T ss_pred hCCCCccHHHHH-HHHHHCC----CcEEEEeCCchhhH---HHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHH
Confidence 345789999999 9999877 89999998654322 222222223321112333333 1 11 122
Q ss_pred Hhc-----CCCeEEEEcCh-hHHHHHHHCCCceee
Q psy17092 88 HKY-----HTKHTLISGQG-PMEEIAKRLGFNKVV 116 (183)
Q Consensus 88 ~~~-----~~k~v~viG~~-~~~~~l~~~G~~~~~ 116 (183)
.++ ..+.+++||.. .-.+.++.+|+..+.
T Consensus 148 ~~~~~~~~~~~~~v~IgDs~~di~aA~~aG~~~i~ 182 (220)
T PLN02811 148 RRFEDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVM 182 (220)
T ss_pred HHhCCCCCCccceEEEeccHhhHHHHHHCCCeEEE
Confidence 333 24678899964 445567789987654
No 151
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=93.03 E-value=0.059 Score=42.47 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=23.0
Q ss_pred ceEEEEecCCeeeeCCccC--ccHHHHHHHHHHh
Q psy17092 6 SFGLIFDIDGVLVRGKQVL--PGVQDTFMNKLTN 37 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~i--pgA~e~l~~~l~~ 37 (183)
+++|+||.||||..+...+ ++...++ +.+.+
T Consensus 1 i~~i~fDktGTLt~~~~~v~~~~~~~~~-~~~~~ 33 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSVAPPSNEAAL-AIAAA 33 (215)
T ss_dssp ESEEEEECCTTTBESHHEEESCSHHHHH-HHHHH
T ss_pred CeEEEEecCCCcccCeEEEEeccHHHHH-HHHHH
Confidence 4789999999999998877 5555554 44443
No 152
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=92.91 E-value=0.28 Score=40.05 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=41.4
Q ss_pred CCceEEEEecCCeeeeCCc--------cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 4 SPSFGLIFDIDGVLVRGKQ--------VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~--------~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+..+++++|||+||++... .=|+..+|| +.+.+. ..+++.|-.+. .+++.+-..+|+.
T Consensus 19 ~~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL-~~~~~~-----feIvVwTAa~~----~ya~~~l~~l~~~ 84 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFL-TSAYED-----YDIVIWSATSM----KWIEIKMTELGVL 84 (195)
T ss_pred CCCcEEEEeCCCceEcccccCCCceEEeCCCHHHHH-HHHHhC-----CEEEEEecCCH----HHHHHHHHHhccc
Confidence 3568999999999998632 258899999 888763 67888886442 3555544456654
No 153
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=92.87 E-value=0.035 Score=42.80 Aligned_cols=16 Identities=44% Similarity=0.868 Sum_probs=13.8
Q ss_pred EEEEecCCeeeeCCcc
Q psy17092 8 GLIFDIDGVLVRGKQV 23 (183)
Q Consensus 8 ~iifDiDGVL~~g~~~ 23 (183)
+++||+||||++++..
T Consensus 1 ~vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 1 AILFDLDGVLVDTSSA 16 (183)
T ss_pred CeeeccCCceechHHH
Confidence 4899999999999664
No 154
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=92.11 E-value=2 Score=40.06 Aligned_cols=114 Identities=14% Similarity=0.242 Sum_probs=66.9
Q ss_pred ceEEEEecCCeee----eCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH
Q psy17092 6 SFGLIFDIDGVLV----RGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH 81 (183)
Q Consensus 6 ~~~iifDiDGVL~----~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~ 81 (183)
+..+.+..||++. ...++.||+.++| +.|++.|+ +++.++||.... .++.+.+.+|++--...+....
T Consensus 364 ~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l-~~L~~~g~---i~v~ivTgd~~~----~a~~i~~~lgi~~~f~~~~p~~ 435 (556)
T TIGR01525 364 KTVVFVAVDGELLGVIALRDQLRPEAKEAI-AALKRAGG---IKLVMLTGDNRS----AAEAVAAELGIDEVHAELLPED 435 (556)
T ss_pred cEEEEEEECCEEEEEEEecccchHhHHHHH-HHHHHcCC---CeEEEEeCCCHH----HHHHHHHHhCCCeeeccCCHHH
Confidence 4567788888665 4578999999999 99987652 688999985443 3444555788852112221111
Q ss_pred HHHHHHHhc--CCCeEEEEcCh-hHHHHHHHCCCceeeC-HHHHHhhcCCC
Q psy17092 82 TPIKMLHKY--HTKHTLISGQG-PMEEIAKRLGFNKVVT-VDSIRNAHPLL 128 (183)
Q Consensus 82 ~a~~~l~~~--~~k~v~viG~~-~~~~~l~~~G~~~~~t-~~~l~~a~p~l 128 (183)
. ...++++ .+..++++|.+ .....++.+|+-.... ..++......+
T Consensus 436 K-~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~Ad~ 485 (556)
T TIGR01525 436 K-LAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAGSDVAIEAADI 485 (556)
T ss_pred H-HHHHHHHHHcCCEEEEEECChhHHHHHhhCCEeEEeCCCCHHHHHhCCE
Confidence 1 1233221 34688999975 3444566777433322 23444443333
No 155
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=92.06 E-value=0.88 Score=42.27 Aligned_cols=99 Identities=12% Similarity=0.216 Sum_probs=60.5
Q ss_pred EEEEecCCeee----eCCccCccHHHHHHHHHHhcCCCccc-cEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH
Q psy17092 8 GLIFDIDGVLV----RGKQVLPGVQDTFMNKLTNSGGRFVV-PTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT 82 (183)
Q Consensus 8 ~iifDiDGVL~----~g~~~ipgA~e~l~~~l~~~ggk~~i-~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~ 82 (183)
.+.+-.||++. ...++.||+.++| ++|++.| + ++.++||.... .++.+.+.+|++--...+.....
T Consensus 344 ~~~v~~~~~~~g~i~~~d~l~~~~~e~i-~~L~~~G----i~~v~vvTgd~~~----~a~~i~~~lgi~~~f~~~~p~~K 414 (536)
T TIGR01512 344 IVHVARDGTYLGYILLSDEPRPDAAEAI-AELKALG----IEKVVMLTGDRRA----VAERVARELGIDEVHAELLPEDK 414 (536)
T ss_pred EEEEEECCEEEEEEEEeccchHHHHHHH-HHHHHcC----CCcEEEEcCCCHH----HHHHHHHHcCChhhhhccCcHHH
Confidence 34555665543 4578899999999 9999988 8 99999985443 34445557888521112211111
Q ss_pred HHHHHHh--cCCCeEEEEcCh-hHHHHHHHCCCceee
Q psy17092 83 PIKMLHK--YHTKHTLISGQG-PMEEIAKRLGFNKVV 116 (183)
Q Consensus 83 a~~~l~~--~~~k~v~viG~~-~~~~~l~~~G~~~~~ 116 (183)
...+++ ..+..++++|.+ .....++.+|.-...
T Consensus 415 -~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~ 450 (536)
T TIGR01512 415 -LEIVKELREKYGPVAMVGDGINDAPALAAADVGIAM 450 (536)
T ss_pred -HHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCEEEEe
Confidence 123332 234689999976 445556777753333
No 156
>PRK11590 hypothetical protein; Provisional
Probab=92.00 E-value=0.085 Score=42.74 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=14.0
Q ss_pred CceEEEEecCCeeeeCC
Q psy17092 5 PSFGLIFDIDGVLVRGK 21 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~ 21 (183)
..+.++||+||||+.+.
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 45799999999999444
No 157
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=91.42 E-value=1.4 Score=34.95 Aligned_cols=86 Identities=21% Similarity=0.296 Sum_probs=56.9
Q ss_pred CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-----H----HH-HHHhc
Q psy17092 21 KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-----P----IK-MLHKY 90 (183)
Q Consensus 21 ~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-----a----~~-~l~~~ 90 (183)
.+++||+.++| +.|++. +++.++||+... .....+. .+|+.-.-+.++++.. | .. .++++
T Consensus 96 ~~~~~g~~~~L-~~l~~~-----~~~~i~Sn~~~~---~~~~~l~-~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~ 165 (224)
T TIGR02254 96 HQLLPGAFELM-ENLQQK-----FRLYIVTNGVRE---TQYKRLR-KSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERM 165 (224)
T ss_pred CeeCccHHHHH-HHHHhc-----CcEEEEeCCchH---HHHHHHH-HCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHh
Confidence 46899999999 999863 589999997632 2233454 6888644566666532 1 11 23344
Q ss_pred ---CCCeEEEEcCh--hHHHHHHHCCCceee
Q psy17092 91 ---HTKHTLISGQG--PMEEIAKRLGFNKVV 116 (183)
Q Consensus 91 ---~~k~v~viG~~--~~~~~l~~~G~~~~~ 116 (183)
....+++||.. .-.+.++.+|+..+.
T Consensus 166 ~~~~~~~~v~igD~~~~di~~A~~~G~~~i~ 196 (224)
T TIGR02254 166 PKFSKEEVLMIGDSLTADIKGGQNAGLDTCW 196 (224)
T ss_pred cCCCchheEEECCCcHHHHHHHHHCCCcEEE
Confidence 34678999975 356667899987753
No 158
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=91.25 E-value=0.69 Score=38.83 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=32.9
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceecc
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMS 80 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts 80 (183)
++.||..+++ +.+.+.. .+..++++|..-+. +++.+.+..|+.-..++|+|.
T Consensus 71 p~~pgm~~~l-~~l~~~~--~~~~~~IiSDaNs~----fI~~iL~~~gl~~~f~~I~TN 122 (234)
T PF06888_consen 71 PIDPGMKELL-RFLAKNQ--RGFDLIIISDANSF----FIETILEHHGLRDCFSEIFTN 122 (234)
T ss_pred CCCccHHHHH-HHHHhcC--CCceEEEEeCCcHh----HHHHHHHhCCCccccceEEeC
Confidence 4567777777 7774311 23788999875544 444444578887555566665
No 159
>PLN02580 trehalose-phosphatase
Probab=90.75 E-value=0.52 Score=42.41 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=34.9
Q ss_pred ceEEEEecCCeeee------CCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHH
Q psy17092 6 SFGLIFDIDGVLVR------GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQL 64 (183)
Q Consensus 6 ~~~iifDiDGVL~~------g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L 64 (183)
.-+++||.||||.- .-.+-|+..++| +.|.+. .++++|| ||+..++.+.+
T Consensus 119 ~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL-~~La~~-----~~VAIVS---GR~~~~L~~~l 174 (384)
T PLN02580 119 KIALFLDYDGTLSPIVDDPDRALMSDAMRSAV-KNVAKY-----FPTAIIS---GRSRDKVYELV 174 (384)
T ss_pred CeEEEEecCCccCCCCCCcccccCCHHHHHHH-HHHhhC-----CCEEEEe---CCCHHHHHHHh
Confidence 35788999999962 223567788888 888754 4788885 67777654433
No 160
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=90.72 E-value=0.51 Score=40.25 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=50.9
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhC-CCC-CccceeccH-----HH----HH-HHHh
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLG-VEV-EEDQVVMSH-----TP----IK-MLHK 89 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG-~~~-~~~~I~ts~-----~a----~~-~l~~ 89 (183)
+++||+.++| +.|++.| +++.++||.+... ....+. .++ ... ..-.++.+. .| .. .+++
T Consensus 144 ~l~pGv~elL-~~L~~~g----~~l~IvTn~~~~~---~~~~l~-~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~ 214 (286)
T PLN02779 144 PLRPGVLRLM-DEALAAG----IKVAVCSTSNEKA---VSKIVN-TLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAET 214 (286)
T ss_pred CchhhHHHHH-HHHHHCC----CeEEEEeCCCHHH---HHHHHH-HhccccccCceEEEeccccCCCCCCHHHHHHHHHH
Confidence 6899999999 9999887 8999999964332 222333 332 111 111222221 11 11 2233
Q ss_pred c--CCCeEEEEcCh-hHHHHHHHCCCceeeC
Q psy17092 90 Y--HTKHTLISGQG-PMEEIAKRLGFNKVVT 117 (183)
Q Consensus 90 ~--~~k~v~viG~~-~~~~~l~~~G~~~~~t 117 (183)
+ ....+++||.. .-.+.++.+|+..+.-
T Consensus 215 ~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v 245 (286)
T PLN02779 215 LGVDPSRCVVVEDSVIGLQAAKAAGMRCIVT 245 (286)
T ss_pred hCcChHHEEEEeCCHHhHHHHHHcCCEEEEE
Confidence 3 34678889954 4455578899877643
No 161
>PTZ00445 p36-lilke protein; Provisional
Probab=89.87 E-value=0.4 Score=39.90 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=31.2
Q ss_pred CceEEEEecCCeeee---C--Cc-----------cCccHHHHHHHHHHhcCCCccccEEEEeCC
Q psy17092 5 PSFGLIFDIDGVLVR---G--KQ-----------VLPGVQDTFMNKLTNSGGRFVVPTVFVTNA 52 (183)
Q Consensus 5 ~~~~iifDiDGVL~~---g--~~-----------~ipgA~e~l~~~l~~~ggk~~i~~~~lTNn 52 (183)
.+++|++|+|-||+. | .. +-|.-.+++ .+|++.| +++++||=.
T Consensus 42 GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~-~~l~~~~----I~v~VVTfS 100 (219)
T PTZ00445 42 GIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILG-KRLKNSN----IKISVVTFS 100 (219)
T ss_pred CCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHH-HHHHHCC----CeEEEEEcc
Confidence 579999999999986 2 22 234455555 7777766 999999853
No 162
>KOG1615|consensus
Probab=88.65 E-value=0.93 Score=37.49 Aligned_cols=42 Identities=19% Similarity=0.434 Sum_probs=29.6
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV 72 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~ 72 (183)
+.-||+.|.. ..|+++| ..++++|. +-+. ++.-+...+|++.
T Consensus 88 ~lT~Gi~eLv-~~L~~~~----~~v~liSG-GF~~---~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 88 TLTPGIRELV-SRLHARG----TQVYLISG-GFRQ---LIEPVAEQLGIPK 129 (227)
T ss_pred ccCCCHHHHH-HHHHHcC----CeEEEEcC-ChHH---HHHHHHHHhCCcH
Confidence 4678999988 9999887 67777764 3333 3455556788873
No 163
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=88.51 E-value=1 Score=38.62 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=34.0
Q ss_pred CceEEEEecCCeeeeC------CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHH
Q psy17092 5 PSFGLIFDIDGVLVRG------KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADK 60 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g------~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~ 60 (183)
...+|+||.||||... ..+.++..+.| +.|.+... .-++++ |+|+.+++
T Consensus 17 ~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL-~~Las~~~---~~v~ii---SGR~~~~l 71 (266)
T COG1877 17 RKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLL-QDLASDPR---NVVAII---SGRSLAEL 71 (266)
T ss_pred cceEEEEeccccccccccCccccCCCHHHHHHH-HHHHhcCC---CeEEEE---eCCCHHHH
Confidence 4578999999999854 23566677877 88877541 235666 57777663
No 164
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=88.33 E-value=1 Score=35.83 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=32.7
Q ss_pred eeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCC----CHHHHHHHHHHHhCC
Q psy17092 17 LVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS----LAADKAKQLTEWLGV 70 (183)
Q Consensus 17 L~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~----~~~~~~~~L~~~lG~ 70 (183)
++.+-+|+|||.|++ +.|.+.| ...+++|-.... +.++..+-|.+.||.
T Consensus 68 ~f~~l~p~~gA~e~l-~~L~~~g----~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~ 120 (191)
T PF06941_consen 68 FFSNLPPIPGAVEAL-KKLRDKG----HEIVIITARPPEFPDHSAEEKREWLERHFPF 120 (191)
T ss_dssp TTTT--B-TTHHHHH-HHHHTST----TEEEEEEE-SSSSGCCCHHHHHHHHHHHHTH
T ss_pred hhcCCCccHHHHHHH-HHHHHcC----CcEEEEEecCccccchHHHHHHHHHHHHcCC
Confidence 566778999999999 9999876 456777766554 455666667766664
No 165
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=87.84 E-value=1.8 Score=35.73 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=51.4
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC--C--CccceeccH-HHH--H-HHHhc--C
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE--V--EEDQVVMSH-TPI--K-MLHKY--H 91 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~--~--~~~~I~ts~-~a~--~-~l~~~--~ 91 (183)
.++||+.++| ++|+++| +++.++||++......+.+.+. ..++. + -.+.++... .+. . .++++ .
T Consensus 95 ~lypgv~e~L-~~Lk~~G----~~l~I~Sn~s~~~~~~~~~~~~-~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~ 168 (220)
T TIGR01691 95 HLYPDVPPAL-EAWLQLG----LRLAVYSSGSVPAQKLLFGHSD-AGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSP 168 (220)
T ss_pred CcCcCHHHHH-HHHHHCC----CEEEEEeCCCHHHHHHHHhhcc-ccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcC
Confidence 5899999999 9999887 8999999976443322222111 01221 1 112222221 121 1 23333 3
Q ss_pred CCeEEEEcCh-hHHHHHHHCCCceeeC
Q psy17092 92 TKHTLISGQG-PMEEIAKRLGFNKVVT 117 (183)
Q Consensus 92 ~k~v~viG~~-~~~~~l~~~G~~~~~t 117 (183)
...++++|.. .-.+.++.+|+..+..
T Consensus 169 p~e~lfVgDs~~Di~AA~~AG~~ti~v 195 (220)
T TIGR01691 169 PREILFLSDIINELDAARKAGLHTGQL 195 (220)
T ss_pred hhHEEEEeCCHHHHHHHHHcCCEEEEE
Confidence 4668888854 4456678999987643
No 166
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=87.46 E-value=1.1 Score=43.79 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=35.5
Q ss_pred ceEEEEecCCeeeeCC---------ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHH
Q psy17092 6 SFGLIFDIDGVLVRGK---------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQL 64 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~---------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L 64 (183)
..+|+||.||||..-. .+-|+..++| +.|.+.-+ -.++++| ||+.+++-+.+
T Consensus 507 ~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L-~~L~~d~~---~~V~IvS---GR~~~~L~~~~ 567 (797)
T PLN03063 507 NRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETL-KALCSDPK---TTVVVLS---RSGKDILDKNF 567 (797)
T ss_pred CeEEEEecCccccCCCCCccccccCCCCHHHHHHH-HHHHcCCC---CEEEEEe---CCCHHHHHHHh
Confidence 4789999999999431 2556777878 88876431 3677885 67777654444
No 167
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=86.61 E-value=2.7 Score=34.52 Aligned_cols=80 Identities=21% Similarity=0.197 Sum_probs=51.4
Q ss_pred CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-----H--H--H-HHHhc
Q psy17092 21 KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-----P--I--K-MLHKY 90 (183)
Q Consensus 21 ~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-----a--~--~-~l~~~ 90 (183)
-.+.||+.++| +.|++ + +++.++||++.. +. .+|+.-.-+.|+++.. | . . .++++
T Consensus 112 ~~~~~gv~~~L-~~L~~-~----~~l~i~Tn~~~~--------~~-~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~ 176 (238)
T PRK10748 112 IDVPQATHDTL-KQLAK-K----WPLVAITNGNAQ--------PE-LFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKL 176 (238)
T ss_pred CCCCccHHHHH-HHHHc-C----CCEEEEECCCch--------HH-HCCcHHhhceeEecccCCcCCCcHHHHHHHHHHc
Confidence 45789999999 99975 3 689999997643 23 4666533345554421 1 1 1 22333
Q ss_pred --CCCeEEEEcCh--hHHHHHHHCCCcee
Q psy17092 91 --HTKHTLISGQG--PMEEIAKRLGFNKV 115 (183)
Q Consensus 91 --~~k~v~viG~~--~~~~~l~~~G~~~~ 115 (183)
....+++||.. .-...++.+|++.+
T Consensus 177 ~~~~~~~~~VGD~~~~Di~~A~~aG~~~i 205 (238)
T PRK10748 177 NVPIGEILHVGDDLTTDVAGAIRCGMQAC 205 (238)
T ss_pred CCChhHEEEEcCCcHHHHHHHHHCCCeEE
Confidence 34679999976 34555789999875
No 168
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=86.14 E-value=2.2 Score=36.51 Aligned_cols=72 Identities=25% Similarity=0.361 Sum_probs=46.2
Q ss_pred EEEEecCCeeeeCC----------------------ccCc-c-HHHHH--HHHHHhcCC--CccccEEEEeCCCCCCHHH
Q psy17092 8 GLIFDIDGVLVRGK----------------------QVLP-G-VQDTF--MNKLTNSGG--RFVVPTVFVTNAGNSLAAD 59 (183)
Q Consensus 8 ~iifDiDGVL~~g~----------------------~~ip-g-A~e~l--~~~l~~~gg--k~~i~~~~lTNns~~~~~~ 59 (183)
-|.||-||||...+ .|++ | -..++ +.++++.-. ...+++.+||-.+..+.+.
T Consensus 123 RIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~R 202 (264)
T PF06189_consen 123 RIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHER 202 (264)
T ss_pred EEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHH
Confidence 48999999999764 1222 2 12222 155554322 1235579999999998887
Q ss_pred HHHHHHHHhCCCCCccceeccH
Q psy17092 60 KAKQLTEWLGVEVEEDQVVMSH 81 (183)
Q Consensus 60 ~~~~L~~~lG~~~~~~~I~ts~ 81 (183)
.++-|+ .+|+.++ |-++..+
T Consensus 203 vI~TLr-~Wgv~vD-EafFLgG 222 (264)
T PF06189_consen 203 VIRTLR-SWGVRVD-EAFFLGG 222 (264)
T ss_pred HHHHHH-HcCCcHh-HHHHhCC
Confidence 788887 6999986 3444444
No 169
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=86.13 E-value=4.2 Score=39.50 Aligned_cols=94 Identities=11% Similarity=0.149 Sum_probs=57.3
Q ss_pred eEEEEecCCe----eeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH
Q psy17092 7 FGLIFDIDGV----LVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT 82 (183)
Q Consensus 7 ~~iifDiDGV----L~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~ 82 (183)
..+.+=.||+ +...+++-|++.++| ++|++.| ++++++|+....+ ++.+.+.+|++...+ +.....
T Consensus 549 ~~v~va~~~~~~g~i~l~d~~r~~a~~~i-~~L~~~g----i~~~llTGd~~~~----a~~ia~~lgi~~~~~-~~p~~K 618 (741)
T PRK11033 549 TVVLVLRNDDVLGLIALQDTLRADARQAI-SELKALG----IKGVMLTGDNPRA----AAAIAGELGIDFRAG-LLPEDK 618 (741)
T ss_pred EEEEEEECCEEEEEEEEecCCchhHHHHH-HHHHHCC----CEEEEEcCCCHHH----HHHHHHHcCCCeecC-CCHHHH
Confidence 4455655664 446789999999999 9999988 8999998754443 455566788863221 111112
Q ss_pred HHHHHHhc-CCCeEEEEcCh-hHHHHHHHCC
Q psy17092 83 PIKMLHKY-HTKHTLISGQG-PMEEIAKRLG 111 (183)
Q Consensus 83 a~~~l~~~-~~k~v~viG~~-~~~~~l~~~G 111 (183)
+. .++++ .+..|.++|.+ .....++.++
T Consensus 619 ~~-~v~~l~~~~~v~mvGDgiNDapAl~~A~ 648 (741)
T PRK11033 619 VK-AVTELNQHAPLAMVGDGINDAPAMKAAS 648 (741)
T ss_pred HH-HHHHHhcCCCEEEEECCHHhHHHHHhCC
Confidence 21 22222 23579999976 2233455444
No 170
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=85.90 E-value=0.77 Score=37.66 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=24.9
Q ss_pred EEecCCeeeeC------CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHH
Q psy17092 10 IFDIDGVLVRG------KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAAD 59 (183)
Q Consensus 10 ifDiDGVL~~g------~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~ 59 (183)
+||.||||..- ..+.+++.++| +.|.+..+ ..++++ |||+..+
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L-~~La~~~~---~~v~Iv---SGR~~~~ 49 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELL-RALAADPN---NTVAIV---SGRSLDD 49 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHH-HHHHHHSE-----EEEE----SS-HHH
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHH-HHHhccCC---CEEEEE---EeCCHHH
Confidence 69999999942 24577788888 88887541 236666 5677776
No 171
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=85.70 E-value=3.1 Score=36.16 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=45.4
Q ss_pred CceEEEEecCCeeeeCCc----cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceecc
Q psy17092 5 PSFGLIFDIDGVLVRGKQ----VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMS 80 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~----~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts 80 (183)
....|+||+|-||...+. +.|...+.+ +.|++.| -+++|=..|+ ++....-+. .++++---+-|++.
T Consensus 121 ~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL-~~Lk~~g-----~vLvLWSyG~--~eHV~~sl~-~~~L~~~Fd~ii~~ 191 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDEGDVRIRDPAVYDSL-RELKEQG-----CVLVLWSYGN--REHVRHSLK-ELKLEGYFDIIICG 191 (297)
T ss_pred CCcEEEEECCCcccccCCccccCChHHHHHH-HHHHHcC-----CEEEEecCCC--HHHHHHHHH-HhCCccccEEEEeC
Confidence 446899999999997654 357788989 9999876 3444443333 344455566 58887334455554
Q ss_pred HH
Q psy17092 81 HT 82 (183)
Q Consensus 81 ~~ 82 (183)
+.
T Consensus 192 G~ 193 (297)
T PF05152_consen 192 GN 193 (297)
T ss_pred Cc
Confidence 44
No 172
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=85.43 E-value=0.39 Score=37.21 Aligned_cols=13 Identities=46% Similarity=0.882 Sum_probs=12.1
Q ss_pred EEEecCCeeeeCC
Q psy17092 9 LIFDIDGVLVRGK 21 (183)
Q Consensus 9 iifDiDGVL~~g~ 21 (183)
++||+||||+.++
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999988
No 173
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=84.46 E-value=3.2 Score=40.00 Aligned_cols=86 Identities=20% Similarity=0.339 Sum_probs=57.7
Q ss_pred CCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHH---HHHHh-
Q psy17092 14 DGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPI---KMLHK- 89 (183)
Q Consensus 14 DGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~---~~l~~- 89 (183)
=|++...+++=|++.+++ ++|++.| +.++++|.....+ +..+.+.+|++ +++....|. .++++
T Consensus 438 lG~i~l~D~~Rp~a~eaI-~~l~~~G----i~v~miTGD~~~t----a~~iA~~lGI~----~v~a~~~PedK~~~v~~l 504 (675)
T TIGR01497 438 YGVIYLKDIVKGGIKERF-AQLRKMG----IKTIMITGDNRLT----AAAIAAEAGVD----DFIAEATPEDKIALIRQE 504 (675)
T ss_pred EEEEEecccchhHHHHHH-HHHHHCC----CEEEEEcCCCHHH----HHHHHHHcCCC----EEEcCCCHHHHHHHHHHH
Confidence 356667789999999999 9999988 8999998644333 45566678885 455444443 23332
Q ss_pred -cCCCeEEEEcCh-hHHHHHHHCCC
Q psy17092 90 -YHTKHTLISGQG-PMEEIAKRLGF 112 (183)
Q Consensus 90 -~~~k~v~viG~~-~~~~~l~~~G~ 112 (183)
..++.|.++|.+ .....++.+++
T Consensus 505 q~~g~~VamvGDG~NDapAL~~Adv 529 (675)
T TIGR01497 505 QAEGKLVAMTGDGTNDAPALAQADV 529 (675)
T ss_pred HHcCCeEEEECCCcchHHHHHhCCE
Confidence 245689999976 44445555543
No 174
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=84.28 E-value=2.6 Score=40.85 Aligned_cols=81 Identities=17% Similarity=0.387 Sum_probs=57.0
Q ss_pred EEEEecCCe----eeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHH
Q psy17092 8 GLIFDIDGV----LVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTP 83 (183)
Q Consensus 8 ~iifDiDGV----L~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a 83 (183)
.+++-+||. +.-.+++=|+|.+++ ++|++.| +.++++|.-..++ ++.+.+.+|++ +++..-.|
T Consensus 519 ~v~va~dg~~~g~i~~~D~~R~~a~~aI-~~L~~~G----i~~~mLTGDn~~~----A~~iA~~lGId----~v~AellP 585 (713)
T COG2217 519 VVFVAVDGKLVGVIALADELRPDAKEAI-AALKALG----IKVVMLTGDNRRT----AEAIAKELGID----EVRAELLP 585 (713)
T ss_pred EEEEEECCEEEEEEEEeCCCChhHHHHH-HHHHHCC----CeEEEEcCCCHHH----HHHHHHHcChH----hheccCCc
Confidence 478888884 446789999999999 9999988 8899998654443 55566678885 44433222
Q ss_pred H---HHHHh--cCCCeEEEEcCh
Q psy17092 84 I---KMLHK--YHTKHTLISGQG 101 (183)
Q Consensus 84 ~---~~l~~--~~~k~v~viG~~ 101 (183)
- ..+++ .++++|..+|.+
T Consensus 586 edK~~~V~~l~~~g~~VamVGDG 608 (713)
T COG2217 586 EDKAEIVRELQAEGRKVAMVGDG 608 (713)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCC
Confidence 2 23332 245899999976
No 175
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.10 E-value=1.5 Score=40.76 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.9
Q ss_pred CceEEEEecCCeeeeC
Q psy17092 5 PSFGLIFDIDGVLVRG 20 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g 20 (183)
..+++++|+|+|||-|
T Consensus 221 ~kK~LVLDLDNTLWGG 236 (574)
T COG3882 221 SKKALVLDLDNTLWGG 236 (574)
T ss_pred ccceEEEecCCccccc
Confidence 3589999999999965
No 176
>PRK10671 copA copper exporting ATPase; Provisional
Probab=84.03 E-value=11 Score=37.10 Aligned_cols=94 Identities=14% Similarity=0.284 Sum_probs=60.1
Q ss_pred eEEEEecCCe----eeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH
Q psy17092 7 FGLIFDIDGV----LVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT 82 (183)
Q Consensus 7 ~~iifDiDGV----L~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~ 82 (183)
..+++-.||. +...+++.|++.+++ +.|++.| +++.++|+....+ ++.+.+.+|+. +++....
T Consensus 631 ~~v~va~~~~~~g~~~l~d~~r~~a~~~i-~~L~~~g----i~v~~~Tgd~~~~----a~~ia~~lgi~----~~~~~~~ 697 (834)
T PRK10671 631 TPVLLAVDGKAAALLAIRDPLRSDSVAAL-QRLHKAG----YRLVMLTGDNPTT----ANAIAKEAGID----EVIAGVL 697 (834)
T ss_pred eEEEEEECCEEEEEEEccCcchhhHHHHH-HHHHHCC----CeEEEEcCCCHHH----HHHHHHHcCCC----EEEeCCC
Confidence 3456666766 446788999999999 9999887 8999998754433 34445578886 2332222
Q ss_pred HH---HHHHhc--CCCeEEEEcCh-hHHHHHHHCCCc
Q psy17092 83 PI---KMLHKY--HTKHTLISGQG-PMEEIAKRLGFN 113 (183)
Q Consensus 83 a~---~~l~~~--~~k~v~viG~~-~~~~~l~~~G~~ 113 (183)
+. ..++++ ++..++++|.+ .....++.+|.-
T Consensus 698 p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvg 734 (834)
T PRK10671 698 PDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVG 734 (834)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCee
Confidence 21 223322 35689999976 444556677653
No 177
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=84.01 E-value=3.5 Score=37.18 Aligned_cols=57 Identities=25% Similarity=0.160 Sum_probs=39.4
Q ss_pred CceEEEEecCCeeeeCCccCccHHHHH---HHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHH
Q psy17092 5 PSFGLIFDIDGVLVRGKQVLPGVQDTF---MNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTE 66 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~ipgA~e~l---~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~ 66 (183)
+.+.+-||-|+|||..+.-+...-..+ ++.|+ .| +.+.+||-.+-.....|-++|..
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~-~g----v~VgIVTAAGY~~a~kY~~RL~G 205 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLR-RG----VKVGIVTAAGYPGAEKYEERLHG 205 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHh-cC----CeEEEEeCCCCCChHHHHHHHHH
Confidence 458899999999997665553322222 24443 45 89999998776667777777763
No 178
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=83.47 E-value=3.9 Score=34.53 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=25.7
Q ss_pred cccEEEEeCCCCCCHHHHHHHHHHHhCCCCC
Q psy17092 43 VVPTVFVTNAGNSLAADKAKQLTEWLGVEVE 73 (183)
Q Consensus 43 ~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~ 73 (183)
++|++-+|-.+...+.-..+.|. .+|++++
T Consensus 97 ~~~v~alT~~~~~~~~~t~~~Lk-~~gi~fs 126 (252)
T PF11019_consen 97 GIPVIALTARGPNMEDWTLRELK-SLGIDFS 126 (252)
T ss_pred CCcEEEEcCCChhhHHHHHHHHH-HCCCCcc
Confidence 38999999999888888889998 5999864
No 179
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=83.40 E-value=7 Score=31.89 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=55.6
Q ss_pred eCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-----H--HHHH---H
Q psy17092 19 RGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-----P--IKML---H 88 (183)
Q Consensus 19 ~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-----a--~~~l---~ 88 (183)
.+-+++||+.+++ +.|+++| +++...||+..... ...|. .+|+.-..+.++++.. | -.++ +
T Consensus 83 ~~~~~~pGv~~~l-~~L~~~~----i~~avaS~s~~~~~---~~~L~-~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~ 153 (221)
T COG0637 83 EGLKPIPGVVELL-EQLKARG----IPLAVASSSPRRAA---ERVLA-RLGLLDYFDVIVTADDVARGKPAPDIYLLAAE 153 (221)
T ss_pred cCCCCCccHHHHH-HHHHhcC----CcEEEecCChHHHH---HHHHH-HccChhhcchhccHHHHhcCCCCCHHHHHHHH
Confidence 3458899999999 9999887 88888887543322 23343 5777644455555432 1 1233 2
Q ss_pred h--cCCCeEEEEcC-hhHHHHHHHCCCceee
Q psy17092 89 K--YHTKHTLISGQ-GPMEEIAKRLGFNKVV 116 (183)
Q Consensus 89 ~--~~~k~v~viG~-~~~~~~l~~~G~~~~~ 116 (183)
+ .....|+++.. ..-.+..+.+|+..+.
T Consensus 154 ~Lgv~P~~CvviEDs~~Gi~Aa~aAGm~vv~ 184 (221)
T COG0637 154 RLGVDPEECVVVEDSPAGIQAAKAAGMRVVG 184 (221)
T ss_pred HcCCChHHeEEEecchhHHHHHHHCCCEEEE
Confidence 3 34567777774 3444455688987754
No 180
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=83.38 E-value=3 Score=40.22 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=54.4
Q ss_pred cCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHH---HHHh
Q psy17092 13 IDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIK---MLHK 89 (183)
Q Consensus 13 iDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~---~l~~ 89 (183)
+-|++.-.+++=|++.+++ +.|++.| +.++.+|.-...+ ++.+.+.+|++ +++...+|-. ++++
T Consensus 436 ~lG~i~l~D~~R~~~~eai-~~Lr~~G----I~vvMiTGDn~~T----A~aIA~elGId----~v~A~~~PedK~~iV~~ 502 (679)
T PRK01122 436 VLGVIYLKDIVKPGIKERF-AELRKMG----IKTVMITGDNPLT----AAAIAAEAGVD----DFLAEATPEDKLALIRQ 502 (679)
T ss_pred EEEEEEEeccCchhHHHHH-HHHHHCC----CeEEEECCCCHHH----HHHHHHHcCCc----EEEccCCHHHHHHHHHH
Confidence 3466667889999999999 9999988 8999998655444 44556678885 5665555542 3332
Q ss_pred --cCCCeEEEEcCh
Q psy17092 90 --YHTKHTLISGQG 101 (183)
Q Consensus 90 --~~~k~v~viG~~ 101 (183)
..++.|.++|.+
T Consensus 503 lQ~~G~~VaMtGDG 516 (679)
T PRK01122 503 EQAEGRLVAMTGDG 516 (679)
T ss_pred HHHcCCeEEEECCC
Confidence 356789999975
No 181
>KOG2116|consensus
Probab=83.35 E-value=2.8 Score=40.18 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=43.1
Q ss_pred eEEEEecCCeeeeCCc------------cCccHHHHHHHHHHhcCCCccccEEEEeCCCC---CCHHHHHHHHHHHhCCC
Q psy17092 7 FGLIFDIDGVLVRGKQ------------VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGN---SLAADKAKQLTEWLGVE 71 (183)
Q Consensus 7 ~~iifDiDGVL~~g~~------------~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~---~~~~~~~~~L~~~lG~~ 71 (183)
+.||.||||||..++. ..-|.+..+ .++.++| .+++|||-.+- -+...|..-++ .-|-.
T Consensus 531 kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLy-t~Ik~NG----Yk~lyLSARaIgQA~~TR~yL~nv~-QdG~~ 604 (738)
T KOG2116|consen 531 KIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLY-TKIKENG----YKILYLSARAIGQADSTRQYLKNVE-QDGKK 604 (738)
T ss_pred cEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHH-HHHHhCC----eeEEEEehhhhhhhHHHHHHHHHHh-hcCcc
Confidence 6799999999998652 356888888 8888877 89999987652 23344555565 36654
Q ss_pred C
Q psy17092 72 V 72 (183)
Q Consensus 72 ~ 72 (183)
+
T Consensus 605 L 605 (738)
T KOG2116|consen 605 L 605 (738)
T ss_pred C
Confidence 4
No 182
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=83.15 E-value=2.4 Score=42.30 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=35.1
Q ss_pred ceEEEEecCCeeeeC---------------CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHH
Q psy17092 6 SFGLIFDIDGVLVRG---------------KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLT 65 (183)
Q Consensus 6 ~~~iifDiDGVL~~g---------------~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~ 65 (183)
..+|+||.||||.-- -.+.|+..++| +.|.+.-+ -.++++ |||+.+++-+.+.
T Consensus 591 ~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L-~~L~~dp~---n~VaIV---SGR~~~~Le~~fg 658 (934)
T PLN03064 591 NRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPL-RALCSDPK---TTIVVL---SGSDRSVLDENFG 658 (934)
T ss_pred ceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHH-HHHHhCCC---CeEEEE---eCCCHHHHHHHhC
Confidence 468999999999842 12446677777 88876421 367777 4677776554443
No 183
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=83.07 E-value=7.9 Score=30.90 Aligned_cols=83 Identities=12% Similarity=0.152 Sum_probs=50.2
Q ss_pred CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCcc-ceeccHH-----H--H--H-HHHh
Q psy17092 21 KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEED-QVVMSHT-----P--I--K-MLHK 89 (183)
Q Consensus 21 ~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~-~I~ts~~-----a--~--~-~l~~ 89 (183)
..++||+.++| +.|+ +++.++||++. ......|. .+|+.-.-+ .++++.. | . . .+++
T Consensus 87 ~~~~~gv~~~L-~~L~-------~~~~ivTn~~~---~~~~~~l~-~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~ 154 (221)
T PRK10563 87 LEPIAGANALL-ESIT-------VPMCVVSNGPV---SKMQHSLG-KTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEA 154 (221)
T ss_pred CCcCCCHHHHH-HHcC-------CCEEEEeCCcH---HHHHHHHH-hcChHHhCcceEeeHHhcCCCCCChHHHHHHHHH
Confidence 56799999988 8772 69999999542 22334454 677753332 3444421 1 1 1 2233
Q ss_pred c--CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 90 Y--HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 90 ~--~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
+ ....+++||.. .-.+.++.+|++.+
T Consensus 155 ~~~~p~~~l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 155 MNVNVENCILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred cCCCHHHeEEEeCcHhhHHHHHHCCCEEE
Confidence 3 33568888853 44555778999875
No 184
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=83.04 E-value=7.9 Score=30.17 Aligned_cols=84 Identities=17% Similarity=0.342 Sum_probs=53.3
Q ss_pred eEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH-HHH-
Q psy17092 7 FGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH-TPI- 84 (183)
Q Consensus 7 ~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~-~a~- 84 (183)
+...-|.++|+-.|.+.++...+.| +.|.+. +.+ ++. |+-... ...+|.+..|+++ +.++-.+ .-.
T Consensus 15 d~~~~~v~~tiatgGklf~ev~e~i-qeL~d~-----V~i-~IA--SgDr~g-sl~~lae~~gi~~--~rv~a~a~~e~K 82 (152)
T COG4087 15 DSKAGKVLYTIATGGKLFSEVSETI-QELHDM-----VDI-YIA--SGDRKG-SLVQLAEFVGIPV--ERVFAGADPEMK 82 (152)
T ss_pred eeecceEEEEEccCcEEcHhhHHHH-HHHHHh-----heE-EEe--cCCcch-HHHHHHHHcCCce--eeeecccCHHHH
Confidence 3445678999999999999999999 999874 333 443 232222 3455666788764 4554433 222
Q ss_pred -HHHHhc--CCCeEEEEcChh
Q psy17092 85 -KMLHKY--HTKHTLISGQGP 102 (183)
Q Consensus 85 -~~l~~~--~~k~v~viG~~~ 102 (183)
.++.+. +..++..+|++.
T Consensus 83 ~~ii~eLkk~~~k~vmVGnGa 103 (152)
T COG4087 83 AKIIRELKKRYEKVVMVGNGA 103 (152)
T ss_pred HHHHHHhcCCCcEEEEecCCc
Confidence 244433 457888889763
No 185
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=82.90 E-value=6.3 Score=39.00 Aligned_cols=106 Identities=17% Similarity=0.265 Sum_probs=65.5
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCcc-------------------
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEED------------------- 75 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~------------------- 75 (183)
|.+.-.+++-|++.+++ +.|++.| +++.++|+....+.. .+.+.+|+.-..+
T Consensus 521 Gli~l~Dp~r~~~~~~i-~~l~~~G----i~v~miTGD~~~tA~----~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~ 591 (884)
T TIGR01522 521 GLVGINDPPRPGVKEAV-TTLITGG----VRIIMITGDSQETAV----SIARRLGMPSKTSQSVSGEKLDAMDDQQLSQI 591 (884)
T ss_pred EEEeccCcchhHHHHHH-HHHHHCC----CeEEEECCCCHHHHH----HHHHHcCCCCCCCceeEhHHhHhCCHHHHHHH
Confidence 56667789999999999 9999988 899999986655544 3445678753222
Q ss_pred ----ceeccHHHHH---HHH--hcCCCeEEEEcCh-hHHHHHHHC--CCceeeCHHHHHhhcCCCc
Q psy17092 76 ----QVVMSHTPIK---MLH--KYHTKHTLISGQG-PMEEIAKRL--GFNKVVTVDSIRNAHPLLD 129 (183)
Q Consensus 76 ----~I~ts~~a~~---~l~--~~~~k~v~viG~~-~~~~~l~~~--G~~~~~t~~~l~~a~p~l~ 129 (183)
.++....|.. +++ +..+..|.++|.+ .....++.+ |+..-.+..++.+..+.+.
T Consensus 592 ~~~~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia~g~~g~~va~~aaDiv 657 (884)
T TIGR01522 592 VPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAMGQTGTDVAKEAADMI 657 (884)
T ss_pred hhcCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEecCCCcCHHHHHhcCEE
Confidence 2333323321 222 2246789999975 333444544 4433224566766555553
No 186
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=82.02 E-value=3.7 Score=32.40 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=43.1
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH------HH--H-HHHhc--
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT------PI--K-MLHKY-- 90 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~------a~--~-~l~~~-- 90 (183)
.+.+++.++| +.|++.| +++.++||+.. ......|. .+|+.--.+.++++.. +. . .+++.
T Consensus 106 ~~~~~~~~~L-~~l~~~g----~~~~i~T~~~~---~~~~~~l~-~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~ 176 (197)
T TIGR01548 106 ETLLTPKGLL-RELHRAP----KGMAVVTGRPR---KDAAKFLT-THGLEILFPVQIWMEDCPPKPNPEPLILAAKALGV 176 (197)
T ss_pred ccccCHHHHH-HHHHHcC----CcEEEECCCCH---HHHHHHHH-HcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCc
Confidence 4566779999 9999877 89999998643 22333454 7888643444444321 11 1 22333
Q ss_pred CCCeEEEEcCh
Q psy17092 91 HTKHTLISGQG 101 (183)
Q Consensus 91 ~~k~v~viG~~ 101 (183)
....+++||..
T Consensus 177 ~~~~~i~vGD~ 187 (197)
T TIGR01548 177 EACHAAMVGDT 187 (197)
T ss_pred CcccEEEEeCC
Confidence 34568888854
No 187
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=81.01 E-value=4.1 Score=39.32 Aligned_cols=74 Identities=22% Similarity=0.395 Sum_probs=52.4
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHH---HHHh--
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIK---MLHK-- 89 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~---~l~~-- 89 (183)
|++.-.+++=|++.+++ +.|++.| +.++.+|.-...+ +..+.+.+|+. +++...+|-. +++.
T Consensus 434 G~i~l~Dp~R~~a~e~I-~~Lr~~G----I~vvMiTGDn~~T----A~aIA~elGI~----~v~A~~~PedK~~iV~~lQ 500 (673)
T PRK14010 434 GVIYLKDVIKDGLVERF-RELREMG----IETVMCTGDNELT----AATIAKEAGVD----RFVAECKPEDKINVIREEQ 500 (673)
T ss_pred EEEEeecCCcHHHHHHH-HHHHHCC----CeEEEECCCCHHH----HHHHHHHcCCc----eEEcCCCHHHHHHHHHHHH
Confidence 45556789999999999 9999988 8999998655444 45566678886 4555444442 3332
Q ss_pred cCCCeEEEEcCh
Q psy17092 90 YHTKHTLISGQG 101 (183)
Q Consensus 90 ~~~k~v~viG~~ 101 (183)
..++.|.++|.+
T Consensus 501 ~~G~~VaMtGDG 512 (673)
T PRK14010 501 AKGHIVAMTGDG 512 (673)
T ss_pred hCCCEEEEECCC
Confidence 346788899975
No 188
>PLN02811 hydrolase
Probab=80.77 E-value=0.85 Score=36.87 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=30.3
Q ss_pred cCCeeeeCCccCccHHHHHHHHHHhcCCCccccE--EEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 13 IDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPT--VFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 13 iDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~--~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|||||+++...+..++. +.+++.| +++ -+....-+.+..+.+..+.+.+|++
T Consensus 1 ~DGTL~Ds~~~~~~a~~---~~~~~~g----~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 54 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQE---KILARYG----KTFDWSLKAKMMGKKAIEAARIFVEESGLS 54 (220)
T ss_pred CCCcceecHHHHHHHHH---HHHHHcC----CCCCHHHHHHccCCCHHHHHHHHHHHhCCC
Confidence 79999999886665555 4555544 331 1122234555555566665556664
No 189
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=79.19 E-value=6 Score=28.42 Aligned_cols=66 Identities=26% Similarity=0.354 Sum_probs=43.5
Q ss_pred CceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC--CCccceeccH
Q psy17092 5 PSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE--VEEDQVVMSH 81 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~--~~~~~I~ts~ 81 (183)
..+.+++||.+|-+-+...+.--.++. +.++..| ++++ ++| ........|. ..|+. +.+++++.+-
T Consensus 47 ~~~~vIlD~s~v~~iDssgi~~L~~~~-~~~~~~g----~~~~-l~~----~~~~v~~~l~-~~~~~~~~~~~~~~~s~ 114 (117)
T PF01740_consen 47 TIKNVILDMSGVSFIDSSGIQALVDII-KELRRRG----VQLV-LVG----LNPDVRRILE-RSGLIDFIPEDQIFPSV 114 (117)
T ss_dssp SSSEEEEEETTESEESHHHHHHHHHHH-HHHHHTT----CEEE-EES----HHHHHHHHHH-HTTGHHHSCGGEEESSH
T ss_pred cceEEEEEEEeCCcCCHHHHHHHHHHH-HHHHHCC----CEEE-EEE----CCHHHHHHHH-HcCCChhcCCCCccCCH
Confidence 468999999999888777555555555 7777777 4544 444 2334455565 68875 4566777653
No 190
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=77.91 E-value=17 Score=28.04 Aligned_cols=82 Identities=20% Similarity=0.264 Sum_probs=50.1
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH---------HH--H--H-HH
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH---------TP--I--K-ML 87 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~---------~a--~--~-~l 87 (183)
++.||+.++| +.|+ .++.++||++... ....+. .+|+.-.-+.|+++. .| . . .+
T Consensus 84 ~~~~g~~~~L-~~L~-------~~~~i~Tn~~~~~---~~~~l~-~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~ 151 (184)
T TIGR01993 84 KPDPELRNLL-LRLP-------GRKIIFTNGDRAH---ARRALN-RLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKAL 151 (184)
T ss_pred CCCHHHHHHH-HhCC-------CCEEEEeCCCHHH---HHHHHH-HcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHH
Confidence 4789999988 8775 2678999976432 334454 688753344565542 11 1 1 22
Q ss_pred Hhc--CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 88 HKY--HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 88 ~~~--~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
+++ ....++++|.. .-.+.++.+|+..+
T Consensus 152 ~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i 182 (184)
T TIGR01993 152 REAGVDPERAIFFDDSARNIAAAKALGMKTV 182 (184)
T ss_pred HHhCCCccceEEEeCCHHHHHHHHHcCCEEe
Confidence 333 34567888864 34555788998764
No 191
>KOG2134|consensus
Probab=77.01 E-value=3.6 Score=37.19 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=34.8
Q ss_pred CceEEEEecCCeeeeCCc-------------cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHH
Q psy17092 5 PSFGLIFDIDGVLVRGKQ-------------VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAA 58 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~-------------~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~ 58 (183)
..+-+.||+||||+.... ..|....=+ +.+.+.| +.+++.||..+..+.
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Kl-ktl~~~g----~~l~iftnq~~i~r~ 135 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKL-KTLYQDG----IKLFIFTNQNGIARG 135 (422)
T ss_pred CcceEEEecCCceeecCCcceeeccCccceeeccccchhh-hhhccCC----eEEEEEecccccccC
Confidence 467899999999997643 234444445 6776666 889999998765443
No 192
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=76.99 E-value=5.5 Score=34.33 Aligned_cols=42 Identities=17% Similarity=0.333 Sum_probs=31.1
Q ss_pred CCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCC
Q psy17092 20 GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGV 70 (183)
Q Consensus 20 g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~ 70 (183)
.-++.||+.+++ +.|++.| +|++++|++.+.. ++.+.+.+|+
T Consensus 119 ~l~l~pG~~efl-~~L~~~G----Ipv~IvS~G~~~~----Ie~vL~~lgl 160 (277)
T TIGR01544 119 DVMLKDGYENFF-DKLQQHS----IPVFIFSAGIGNV----LEEVLRQAGV 160 (277)
T ss_pred CCccCcCHHHHH-HHHHHCC----CcEEEEeCCcHHH----HHHHHHHcCC
Confidence 456899999999 9999887 9999999765533 3333335676
No 193
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=75.63 E-value=13 Score=28.90 Aligned_cols=63 Identities=14% Similarity=0.291 Sum_probs=43.3
Q ss_pred EEEEecCCeeeeC--CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC-Ccccee
Q psy17092 8 GLIFDIDGVLVRG--KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV-EEDQVV 78 (183)
Q Consensus 8 ~iifDiDGVL~~g--~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~-~~~~I~ 78 (183)
.-++|+||.++.- .+-+ ...+.+ +.+.+.| .|+++-|--+..+ +.+++++..||-.+ .|++=+
T Consensus 45 iAildL~G~~l~l~S~R~~-~~~evi-~~I~~~G----~PviVAtDV~p~P--~~V~Kia~~f~A~ly~P~~dl 110 (138)
T PF04312_consen 45 IAILDLDGELLDLKSSRNM-SRSEVI-EWISEYG----KPVIVATDVSPPP--ETVKKIARSFNAVLYTPERDL 110 (138)
T ss_pred EEEEecCCcEEEEEeecCC-CHHHHH-HHHHHcC----CEEEEEecCCCCc--HHHHHHHHHhCCcccCCCCcC
Confidence 4579999999853 3333 345666 8888877 8999998766554 35889988887654 344333
No 194
>KOG3085|consensus
Probab=74.34 E-value=3.8 Score=34.55 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=18.4
Q ss_pred CCCceEEEEecCCeeeeCCccCcc
Q psy17092 3 LSPSFGLIFDIDGVLVRGKQVLPG 26 (183)
Q Consensus 3 ~~~~~~iifDiDGVL~~g~~~ipg 26 (183)
++.+++++||++||||....+...
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~ 27 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVME 27 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHH
Confidence 467899999999999985544333
No 195
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=72.84 E-value=34 Score=25.54 Aligned_cols=93 Identities=15% Similarity=0.248 Sum_probs=53.9
Q ss_pred CCeeeeCCccC---------ccHHHHHHHHHHhcCCCccccEEEEeCCCC----CCHHHHHHHHHHHhCCCCCccceecc
Q psy17092 14 DGVLVRGKQVL---------PGVQDTFMNKLTNSGGRFVVPTVFVTNAGN----SLAADKAKQLTEWLGVEVEEDQVVMS 80 (183)
Q Consensus 14 DGVL~~g~~~i---------pgA~e~l~~~l~~~ggk~~i~~~~lTNns~----~~~~~~~~~L~~~lG~~~~~~~I~ts 80 (183)
|..++.|.... .....++ +.+++.. .+.+++|...+ .++.+.+.+.....|++ ++.|+.-
T Consensus 1 d~IvVLG~~~~~~~~~~~~~~R~~~a~-~l~~~~~----~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~--~~~I~~e 73 (150)
T cd06259 1 DAIVVLGGGVNGDGPSPILAERLDAAA-ELYRAGP----APKLIVSGGQGPGEGYSEAEAMARYLIELGVP--AEAILLE 73 (150)
T ss_pred CEEEEeCCccCCCCCChHHHHHHHHHH-HHHHhCC----CCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCC--HHHeeec
Confidence 34455555544 3455555 5555432 67888887764 45777777766678875 3333332
Q ss_pred H-------HH---HHHHHhcCCCeEEEEcCh----hHHHHHHHCCCc
Q psy17092 81 H-------TP---IKMLHKYHTKHTLISGQG----PMEEIAKRLGFN 113 (183)
Q Consensus 81 ~-------~a---~~~l~~~~~k~v~viG~~----~~~~~l~~~G~~ 113 (183)
. .+ ..++.+...+++++|.++ .....++.+|.+
T Consensus 74 ~~s~~T~ena~~~~~~~~~~~~~~i~lVTs~~H~~Ra~~~~~~~~~~ 120 (150)
T cd06259 74 DRSTNTYENARFSAELLRERGIRSVLLVTSAYHMPRALLIFRKAGLD 120 (150)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEECCHHHHHHHHHHHHHcCCC
Confidence 1 11 124445555789999875 344556777765
No 196
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=71.71 E-value=15 Score=32.98 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=30.3
Q ss_pred EEEEecCCeeeeCCc-cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHH
Q psy17092 8 GLIFDIDGVLVRGKQ-VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQ 63 (183)
Q Consensus 8 ~iifDiDGVL~~g~~-~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~ 63 (183)
+++|.+.||+-..++ .+.++.-+| +.+.+.||=+|.++..+.-+..-....++++
T Consensus 4 GiL~S~tG~~a~~e~~~~~~~~lAI-~eINa~GGvlG~~le~v~~Dp~Sd~~~ya~~ 59 (363)
T PF13433_consen 4 GILHSLTGTMAISERSLLDGALLAI-EEINAAGGVLGRQLEPVIYDPASDPSTYAEK 59 (363)
T ss_dssp EEE--SSSTTHHHHHHHHHHHHHHH-HHHHCTTTBTTB--EEEEE--TT-HHHHHHH
T ss_pred EEEEeCCCchHhhhHHHHHHHHHHH-HHHHhcCCcCCeEEEEEEECCCCCHHHHHHH
Confidence 688888888876554 455666666 8888877745566644444444445444433
No 197
>TIGR00035 asp_race aspartate racemase.
Probab=71.40 E-value=55 Score=26.74 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=52.3
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHH-HHHHhcCCCeEEEEcC
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPI-KMLHKYHTKHTLISGQ 100 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~-~~l~~~~~k~v~viG~ 100 (183)
.+.+...+.+ ++|.+.| ..++++.-|+. ....+.+++..+++ ++.-..++ ..++....++|-++|+
T Consensus 59 ~~~~~l~~~~-~~L~~~g----~d~iviaCNTa---h~~~~~l~~~~~iP-----ii~i~~~~~~~~~~~~~~~VgvLaT 125 (229)
T TIGR00035 59 RPRPILIDIA-VKLENAG----ADFIIMPCNTA---HKFAEDIQKAIGIP-----LISMIEETAEAVKEDGVKKAGLLGT 125 (229)
T ss_pred hHHHHHHHHH-HHHHHcC----CCEEEECCccH---HHHHHHHHHhCCCC-----EechHHHHHHHHHHcCCCEEEEEec
Confidence 3566667777 8888766 77777766652 22356777556554 44333332 3445556689999997
Q ss_pred h------hHHHHHHHCCCceeeC
Q psy17092 101 G------PMEEIAKRLGFNKVVT 117 (183)
Q Consensus 101 ~------~~~~~l~~~G~~~~~t 117 (183)
. ...+.++..|++.+..
T Consensus 126 ~~T~~s~~y~~~l~~~g~~v~~p 148 (229)
T TIGR00035 126 KGTMKDGVYEREMKKHGIEIVTP 148 (229)
T ss_pred HHHHHhHHHHHHHHHCCCEEECC
Confidence 5 3456677889876653
No 198
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=70.60 E-value=3.7 Score=30.26 Aligned_cols=41 Identities=12% Similarity=0.290 Sum_probs=27.9
Q ss_pred CCceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCC
Q psy17092 4 SPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAG 53 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns 53 (183)
+.+.++++|+| ......+.+.+ +.++..+ +++|++++++..
T Consensus 37 ~~i~avvi~~d------~~~~~~~~~ll-~~i~~~~--~~iPVFl~~~~~ 77 (115)
T PF03709_consen 37 TDIAAVVISWD------GEEEDEAQELL-DKIRERN--FGIPVFLLAERD 77 (115)
T ss_dssp TTEEEEEEECH------HHHHHHHHHHH-HHHHHHS--TT-EEEEEESCC
T ss_pred CCeeEEEEEcc------cccchhHHHHH-HHHHHhC--CCCCEEEEecCC
Confidence 45688999998 22233456666 8888776 569999999833
No 199
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=70.20 E-value=14 Score=34.25 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=39.8
Q ss_pred CceEEEEecCCeeeeCCcc------------CccHHHHHHHHHHhcCCCccccEEEEeCCCC---CCHHHHHHHHHHHhC
Q psy17092 5 PSFGLIFDIDGVLVRGKQV------------LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGN---SLAADKAKQLTEWLG 69 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~------------ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~---~~~~~~~~~L~~~lG 69 (183)
..+.|++||||||..++-. .-|++... -.+-.+| ..+.++|-.+- -+.+.+..-.. .-|
T Consensus 374 n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLY-tdI~rNG----YkI~YltsR~~Gqa~sTrsylrnie-Qng 447 (580)
T COG5083 374 NKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLY-TDIDRNG----YKIKYLTSRSYGQADSTRSYLRNIE-QNG 447 (580)
T ss_pred CCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhh-hhhccCc----eEEEEEecccccchhhhhhHHHhhh-hcC
Confidence 3478999999999976532 23333333 3333333 67778876542 23444555555 477
Q ss_pred CCCCccceecc
Q psy17092 70 VEVEEDQVVMS 80 (183)
Q Consensus 70 ~~~~~~~I~ts 80 (183)
..+...-++.+
T Consensus 448 ykLpdgpviLs 458 (580)
T COG5083 448 YKLPDGPVILS 458 (580)
T ss_pred ccCCCCCEeec
Confidence 66544444444
No 200
>KOG3109|consensus
Probab=69.73 E-value=4.1 Score=34.30 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=17.0
Q ss_pred CCceEEEEecCCeeeeCCccC
Q psy17092 4 SPSFGLIFDIDGVLVRGKQVL 24 (183)
Q Consensus 4 ~~~~~iifDiDGVL~~g~~~i 24 (183)
+.+++++||||-|||.-..-+
T Consensus 13 ~~~~~l~FDiDdtLYp~St~i 33 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLYPLSTGI 33 (244)
T ss_pred ccceEEEEecccccccCchhH
Confidence 357999999999999766533
No 201
>KOG0207|consensus
Probab=69.23 E-value=24 Score=35.31 Aligned_cols=84 Identities=19% Similarity=0.335 Sum_probs=58.8
Q ss_pred CceEEEEecCCeee----eCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceecc
Q psy17092 5 PSFGLIFDIDGVLV----RGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMS 80 (183)
Q Consensus 5 ~~~~iifDiDGVL~----~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts 80 (183)
..-++++=+||.|. ..+++=|+|..++ ..|++.| +.++++|..-..+ +....+.+|++ +|+..
T Consensus 702 g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av-~~Lk~~G----i~v~mLTGDn~~a----A~svA~~VGi~----~V~ae 768 (951)
T KOG0207|consen 702 GQTVVYVAVNGQLVGVFALEDQVRPDAALAV-AELKSMG----IKVVMLTGDNDAA----ARSVAQQVGID----NVYAE 768 (951)
T ss_pred CceEEEEEECCEEEEEEEeccccchhHHHHH-HHHHhcC----ceEEEEcCCCHHH----HHHHHHhhCcc----eEEec
Confidence 34567888888887 5688999999999 9999988 9999999754443 44555678855 55544
Q ss_pred HHHH---HHHHhc--CCCeEEEEcCh
Q psy17092 81 HTPI---KMLHKY--HTKHTLISGQG 101 (183)
Q Consensus 81 ~~a~---~~l~~~--~~k~v~viG~~ 101 (183)
..|. ..+++. .+++|.++|.+
T Consensus 769 v~P~~K~~~Ik~lq~~~~~VaMVGDG 794 (951)
T KOG0207|consen 769 VLPEQKAEKIKEIQKNGGPVAMVGDG 794 (951)
T ss_pred cCchhhHHHHHHHHhcCCcEEEEeCC
Confidence 4443 234332 34678888864
No 202
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=69.09 E-value=13 Score=31.25 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=18.1
Q ss_pred HHHHHHhcCCCe-EEEEcCh-----------hHHHHHHHCCC
Q psy17092 83 PIKMLHKYHTKH-TLISGQG-----------PMEEIAKRLGF 112 (183)
Q Consensus 83 a~~~l~~~~~k~-v~viG~~-----------~~~~~l~~~G~ 112 (183)
++.+|.+.+.++ +.++|.+ ++++.+++.|+
T Consensus 109 a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl 150 (279)
T PF00532_consen 109 ATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGL 150 (279)
T ss_dssp HHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCC
Confidence 445565555566 6555532 45677788887
No 203
>KOG3189|consensus
Probab=66.36 E-value=12 Score=31.32 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=23.2
Q ss_pred eEEEEecCCeeeeCC-ccCccHHHHHHHHHHh
Q psy17092 7 FGLIFDIDGVLVRGK-QVLPGVQDTFMNKLTN 37 (183)
Q Consensus 7 ~~iifDiDGVL~~g~-~~ipgA~e~l~~~l~~ 37 (183)
-.++||.||||.-.. ...|...++| +.|++
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l-~~lr~ 42 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFL-QKLRK 42 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHH-HHHhh
Confidence 478999999999654 4567777877 77775
No 204
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=65.26 E-value=28 Score=28.72 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=24.4
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhC
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLG 69 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG 69 (183)
..-||-.+++ +.+++++ +|++++|. |+.. ++..|-+.++
T Consensus 73 ~Idp~fKef~-e~ike~d----i~fiVvSs--Gm~~--fI~~lfe~iv 111 (220)
T COG4359 73 KIDPGFKEFV-EWIKEHD----IPFIVVSS--GMDP--FIYPLFEGIV 111 (220)
T ss_pred ccCccHHHHH-HHHHHcC----CCEEEEeC--CCch--HHHHHHHhhc
Confidence 3456777777 7788777 89999974 4443 3333433444
No 205
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=64.62 E-value=15 Score=36.67 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=37.1
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|.+.-.+++=|++.+++ +.|++.| +.++++|.-...+ +..+.+.+|+.
T Consensus 543 Gli~l~Dp~R~~a~~aI-~~l~~aG----I~v~miTGD~~~t----A~aIA~~lGI~ 590 (903)
T PRK15122 543 GFLTFLDPPKESAAPAI-AALRENG----VAVKVLTGDNPIV----TAKICREVGLE 590 (903)
T ss_pred EEEeccCccHHHHHHHH-HHHHHCC----CeEEEECCCCHHH----HHHHHHHcCCC
Confidence 55556788999999999 9999988 9999998755444 44455667874
No 206
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=64.23 E-value=8 Score=34.29 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=25.6
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHH
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAA 58 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~ 58 (183)
.+.||+.++| +.|++.| ++++++||......+
T Consensus 184 ~~~pgl~elL-~~Lr~~G----~klfLvTNS~~~yt~ 215 (343)
T TIGR02244 184 LRDPKLPLFL-SKLKEHG----KKLFLLTNSDYDYTD 215 (343)
T ss_pred ccchhHHHHH-HHHHHCC----CeEEEEeCCCHHHHH
Confidence 3588999999 9999887 899999996544333
No 207
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=64.10 E-value=43 Score=28.76 Aligned_cols=86 Identities=13% Similarity=0.205 Sum_probs=56.1
Q ss_pred Ccc-HHHHHHHHHHhcCCCc-----cccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccH-HHHHHHHhcCCCeEE
Q psy17092 24 LPG-VQDTFMNKLTNSGGRF-----VVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSH-TPIKMLHKYHTKHTL 96 (183)
Q Consensus 24 ipg-A~e~l~~~l~~~ggk~-----~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~-~a~~~l~~~~~k~v~ 96 (183)
-|| |..++ ++|.+.+... .+.++++|+|+..+--.+.+-++ .+|++++.- +++++ .+..|++-++ -..|
T Consensus 12 ~~G~aFp~v-k~Ll~lN~~~~~e~~~VEVVllSRNspdTGlRv~nSI~-hygL~ItR~-~ft~G~~~~~Yl~af~-v~LF 87 (264)
T PF06189_consen 12 KPGVAFPFV-KALLALNDLLPEEDPLVEVVLLSRNSPDTGLRVFNSIR-HYGLDITRA-AFTGGESPYPYLKAFN-VDLF 87 (264)
T ss_pred CCCCchHHH-HHHHHhhccccccCCceEEEEEecCCHHHHHHHHHhHH-HhCCcceee-eecCCCCHHHHHHHhC-CceE
Confidence 445 44555 7666543221 25579999999998888888887 799998654 56666 5666887664 4456
Q ss_pred EEcChhHHHHHHHCCCc
Q psy17092 97 ISGQGPMEEIAKRLGFN 113 (183)
Q Consensus 97 viG~~~~~~~l~~~G~~ 113 (183)
+-........+-..|+.
T Consensus 88 LSan~~DV~~Ai~~G~~ 104 (264)
T PF06189_consen 88 LSANEDDVQEAIDAGIP 104 (264)
T ss_pred eeCCHHHHHHHHHcCCC
Confidence 66665554444466653
No 208
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=63.89 E-value=55 Score=24.05 Aligned_cols=84 Identities=11% Similarity=0.154 Sum_probs=49.9
Q ss_pred eeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHH-HHHHhcCCCeEE
Q psy17092 18 VRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPI-KMLHKYHTKHTL 96 (183)
Q Consensus 18 ~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~-~~l~~~~~k~v~ 96 (183)
.+..+.+-|..+++ +.+++ | + ...+|+.++.+.....-.+.+.+..|+++. ...-+.... ..+-......++
T Consensus 21 ~raGKlv~G~~~vl-kalk~-g-k--aklViiA~D~~~~~kkki~~~~~~~~Vpv~--~~~~t~~eLG~A~Gk~~r~svv 93 (108)
T PTZ00106 21 MKSGKYTLGTKSTL-KALRN-G-K--AKLVIISNNCPPIRRSEIEYYAMLSKTGVH--HYAGNNNDLGTACGRHFRVSVM 93 (108)
T ss_pred HHhCCeeecHHHHH-HHHHc-C-C--eeEEEEeCCCCHHHHHHHHHHHhhcCCCEE--EeCCCHHHHHHHhCCccCeEEE
Confidence 45677888999988 88885 3 3 678889888877655555666666777751 111222222 233111112256
Q ss_pred EEcChhHHHHHH
Q psy17092 97 ISGQGPMEEIAK 108 (183)
Q Consensus 97 viG~~~~~~~l~ 108 (183)
.|-..++.+.+.
T Consensus 94 aI~D~G~a~~l~ 105 (108)
T PTZ00106 94 SITDAGDSDILR 105 (108)
T ss_pred EEeCcchHHHHh
Confidence 666777666553
No 209
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=62.71 E-value=37 Score=26.04 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=50.5
Q ss_pred CCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH-----H----HH-HHHh
Q psy17092 20 GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-----P----IK-MLHK 89 (183)
Q Consensus 20 g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-----a----~~-~l~~ 89 (183)
+..++|+ .+.| ..|++ + +++.++||++... ....|. .+|+.--.+.|+++.. | .. .+++
T Consensus 86 ~~~~~~~-~e~L-~~L~~-~----~~l~I~T~~~~~~---~~~~l~-~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~ 154 (188)
T PRK10725 86 SVEPLPL-IEVV-KAWHG-R----RPMAVGTGSESAI---AEALLA-HLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQL 154 (188)
T ss_pred cCCCccH-HHHH-HHHHh-C----CCEEEEcCCchHH---HHHHHH-hCCcHhHceEEEehhhccCCCCChHHHHHHHHH
Confidence 4456775 6888 88874 2 5888998854332 234455 6887644456666542 1 11 2233
Q ss_pred c--CCCeEEEEcCh-hHHHHHHHCCCcee
Q psy17092 90 Y--HTKHTLISGQG-PMEEIAKRLGFNKV 115 (183)
Q Consensus 90 ~--~~k~v~viG~~-~~~~~l~~~G~~~~ 115 (183)
+ ....++++|.. .-.+.++.+|++.+
T Consensus 155 ~~~~~~~~l~igDs~~di~aA~~aG~~~i 183 (188)
T PRK10725 155 MGVQPTQCVVFEDADFGIQAARAAGMDAV 183 (188)
T ss_pred cCCCHHHeEEEeccHhhHHHHHHCCCEEE
Confidence 3 23457777853 44566778998754
No 210
>PRK11590 hypothetical protein; Provisional
Probab=62.63 E-value=21 Score=28.65 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=27.4
Q ss_pred ccCccHHHHHHHH-HHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCC
Q psy17092 22 QVLPGVQDTFMNK-LTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGV 70 (183)
Q Consensus 22 ~~ipgA~e~l~~~-l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~ 70 (183)
.++||+.+.| +. +++.| .+++++||... .+++.+.+.+|+
T Consensus 95 ~~~pga~e~L-~~~l~~~G----~~l~IvSas~~----~~~~~il~~l~~ 135 (211)
T PRK11590 95 TAFPVVQERL-TTYLLSSD----ADVWLITGSPQ----PLVEQVYFDTPW 135 (211)
T ss_pred cCCccHHHHH-HHHHHhCC----CEEEEEeCCcH----HHHHHHHHHccc
Confidence 4589999998 75 55555 79999998543 345545446674
No 211
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=62.21 E-value=21 Score=32.77 Aligned_cols=133 Identities=10% Similarity=0.161 Sum_probs=71.5
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCC--ccceeccHHH-H-HHHH----hcCCCeEEEEcC----
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVE--EDQVVMSHTP-I-KMLH----KYHTKHTLISGQ---- 100 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~--~~~I~ts~~a-~-~~l~----~~~~k~v~viG~---- 100 (183)
+.|++ +|++|++.+.=-+-.........+.+.+|.++. .++++..... . ..+. ...+|++++.|.
T Consensus 271 ~~Le~---~fGiP~~~~~~~Gi~~T~~~Lr~ia~~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~g~~~~ 347 (466)
T TIGR01282 271 RHMEE---KYGIPWMEYNFFGPTKIAESLRKIAEFFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYVGGLRP 347 (466)
T ss_pred HHHHH---HhCCceEeCCCCCHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcH
Confidence 45554 356998766423334444556677777775432 2333333222 1 1232 357899888873
Q ss_pred hhHHHHHHHCCCceeeC------HHHHHhhcCCCcccccccccccCcchhhhHHHHHhhhhccccccCCCCCCCCccccc
Q psy17092 101 GPMEEIAKRLGFNKVVT------VDSIRNAHPLLDCVDHRRRVSLFPRYCSRAQSLLSSELKITDRSLDHKAKIGRSEAT 174 (183)
Q Consensus 101 ~~~~~~l~~~G~~~~~t------~~~l~~a~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 174 (183)
..+...++++|++.+.+ -+++......+. . ..... .. .-..++.+.+.-.+.||-..|..|++++.
T Consensus 348 ~~~~~~l~ELGmevv~~g~~~~~~~~~~~~~~~~~----~-~~~i~-~~--~d~~el~~~i~~~~pDl~ig~~~~~~~a~ 419 (466)
T TIGR01282 348 RHVIGAFEDLGMEVIGTGYEFAHNDDYERTTKYMK----D-GTLIY-DD--VTHYEFEEFVEKLKPDLVGSGIKEKYVFQ 419 (466)
T ss_pred HHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHhcC----C-CeEEe-eC--CCHHHHHHHHHHhCCCEEEecCCccceee
Confidence 24556678999988654 234444433321 0 10000 00 11234556666677888777878888765
Q ss_pred cc
Q psy17092 175 TH 176 (183)
Q Consensus 175 ~~ 176 (183)
-.
T Consensus 420 k~ 421 (466)
T TIGR01282 420 KM 421 (466)
T ss_pred ec
Confidence 43
No 212
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=62.14 E-value=22 Score=34.62 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=37.3
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|.+.-.+++=|++.+++ +.|++.| +.++++|.....+.. .+.+.+|+.
T Consensus 435 Gli~l~Dp~R~~a~~aI-~~l~~aG----I~v~miTGD~~~tA~----~IA~~lGI~ 482 (755)
T TIGR01647 435 GLLPLFDPPRHDTKETI-ERARHLG----VEVKMVTGDHLAIAK----ETARRLGLG 482 (755)
T ss_pred EEeeccCCChhhHHHHH-HHHHHCC----CeEEEECCCCHHHHH----HHHHHcCCC
Confidence 55666789999999999 9999988 999999876655544 445567774
No 213
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=61.42 E-value=4.7 Score=37.50 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.0
Q ss_pred eEEEEecCCeeeeCCccCc
Q psy17092 7 FGLIFDIDGVLVRGKQVLP 25 (183)
Q Consensus 7 ~~iifDiDGVL~~g~~~ip 25 (183)
..++||+||||.++...+|
T Consensus 23 ~~~~FDfDGTLt~~~s~f~ 41 (497)
T PLN02177 23 QTVAADLDGTLLISRSAFP 41 (497)
T ss_pred cEEEEecCCcccCCCCccH
Confidence 5699999999999776555
No 214
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=61.16 E-value=59 Score=23.35 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=50.8
Q ss_pred eCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHH-HHHHhcCCCeEEE
Q psy17092 19 RGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPI-KMLHKYHTKHTLI 97 (183)
Q Consensus 19 ~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~-~~l~~~~~k~v~v 97 (183)
+.++.+-|..+++ +.+++.. ..+++++++.+.........+.+..++++ -....+...+ ..+-......++.
T Consensus 13 ragkl~~G~~~v~-kai~~gk----aklViiA~D~~~~~~~~i~~~c~~~~Ip~--~~~~~tk~eLG~a~Gk~~~~~~va 85 (99)
T PRK01018 13 DTGKVILGSKRTI-KAIKLGK----AKLVIVASNCPKDIKEDIEYYAKLSGIPV--YEYEGSSVELGTLCGKPFTVSALA 85 (99)
T ss_pred HcCCEEEcHHHHH-HHHHcCC----ceEEEEeCCCCHHHHHHHHHHHHHcCCCE--EEECCCHHHHHHHhCCCCCEEEEE
Confidence 4567788888988 8887532 68899999876665555566666677774 1221123222 2332211235777
Q ss_pred EcChhHHHHHH
Q psy17092 98 SGQGPMEEIAK 108 (183)
Q Consensus 98 iG~~~~~~~l~ 108 (183)
|...++.+.+.
T Consensus 86 I~D~G~a~~~~ 96 (99)
T PRK01018 86 IVDPGESDILE 96 (99)
T ss_pred EecCCHHHHHH
Confidence 77777777654
No 215
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=60.95 E-value=58 Score=26.86 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=37.2
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccce-eccHHH--H-----HHHHhcCCCeEEEEcChhHHHHHHHCCCcee
Q psy17092 44 VPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQV-VMSHTP--I-----KMLHKYHTKHTLISGQGPMEEIAKRLGFNKV 115 (183)
Q Consensus 44 i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I-~ts~~a--~-----~~l~~~~~k~v~viG~~~~~~~l~~~G~~~~ 115 (183)
=.++|+|..+.--.+...+-|.+.|.+. ...-| +....+ . .+++. ++-+++.--++.....++++|.+.+
T Consensus 131 D~i~FvTGRt~gk~d~vsk~Lak~F~i~-~m~pv~f~Gdk~k~~qy~Kt~~i~~-~~~~IhYGDSD~Di~AAkeaG~RgI 208 (237)
T COG3700 131 DAIYFVTGRTPGKTDTVSKTLAKNFHIT-NMNPVIFAGDKPKPGQYTKTQWIQD-KNIRIHYGDSDNDITAAKEAGARGI 208 (237)
T ss_pred CeEEEEecCCCCcccccchhHHhhcccC-CCcceeeccCCCCcccccccHHHHh-cCceEEecCCchhhhHHHhcCccce
Confidence 4589999877655556667777666553 11112 221111 1 22322 2334444445666666788886543
No 216
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=60.60 E-value=22 Score=35.24 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=37.5
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|.+.-.+++=|++.+++ +.|++.| +.++++|.....+. ..+.+.+|+.
T Consensus 508 Gli~l~Dp~R~~~~~aI-~~l~~aG----I~vvmiTGD~~~tA----~aIA~~lGI~ 555 (867)
T TIGR01524 508 GFLGFLDPPKESTKEAI-AALFKNG----INVKVLTGDNEIVT----ARICQEVGID 555 (867)
T ss_pred EEEEeeCCCchhHHHHH-HHHHHCC----CEEEEEcCCCHHHH----HHHHHHcCCC
Confidence 56667788999999999 9999988 99999987555444 4455667774
No 217
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=59.97 E-value=4.4 Score=32.12 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=10.5
Q ss_pred EEEecCCeeeeCC
Q psy17092 9 LIFDIDGVLVRGK 21 (183)
Q Consensus 9 iifDiDGVL~~g~ 21 (183)
|.+||||||.+..
T Consensus 5 I~iDiDgVLad~~ 17 (191)
T PF06941_consen 5 IAIDIDGVLADFN 17 (191)
T ss_dssp EEEESBTTTB-HH
T ss_pred EEEECCCCCcccH
Confidence 8999999999753
No 218
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=59.71 E-value=30 Score=34.59 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=37.5
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|.+.-.+++=|++.+++ +.|++.| ++++++|.....+.. .+.+.+|+.
T Consensus 572 Gli~~~Dplr~~~~~aI-~~l~~aG----I~v~miTGD~~~tA~----~iA~~~GI~ 619 (941)
T TIGR01517 572 GVVGIKDPLRPGVREAV-QECQRAG----ITVRMVTGDNIDTAK----AIARNCGIL 619 (941)
T ss_pred EEeeccCCCchhHHHHH-HHHHHCC----CEEEEECCCChHHHH----HHHHHcCCC
Confidence 66667788999999999 9999988 899999976655544 445567774
No 219
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=56.80 E-value=39 Score=23.81 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=35.4
Q ss_pred CceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCcccee
Q psy17092 5 PSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVV 78 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ 78 (183)
..+.+++|+-||=+-+..-+.--.+.. +.++..| ..++ +++-+ ....+.|. ..|+....-+++
T Consensus 40 ~~~~vvlDls~v~~iDssg~~~l~~~~-~~~~~~g----~~l~-l~g~~----~~v~~~l~-~~gl~~~~~~~~ 102 (109)
T cd07041 40 RARGVIIDLTGVPVIDSAVARHLLRLA-RALRLLG----ARTI-LTGIR----PEVAQTLV-ELGIDLSGIRTA 102 (109)
T ss_pred CCCEEEEECCCCchhcHHHHHHHHHHH-HHHHHcC----CeEE-EEeCC----HHHHHHHH-HhCCChhhceee
Confidence 457899999998887766443333334 6666666 3444 43322 22345565 577764233444
No 220
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=55.00 E-value=82 Score=23.59 Aligned_cols=42 Identities=19% Similarity=0.441 Sum_probs=25.1
Q ss_pred EEEEecCCeeeeCCc--------cCccHHHHHHHHHHhcCCCccccEEEEeCCCC
Q psy17092 8 GLIFDIDGVLVRGKQ--------VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGN 54 (183)
Q Consensus 8 ~iifDiDGVL~~g~~--------~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~ 54 (183)
.+++|+---...... .++...+.+ +.+++.+ .|++++.....
T Consensus 2 LliID~Q~~f~~~~~~~~~~~~~~~~~i~~l~-~~ar~~~----~~vi~~~~~~~ 51 (161)
T cd00431 2 LLVVDMQNDFVPGGGLLLPGADELVPNINRLL-AAARAAG----IPVIFTRDWHP 51 (161)
T ss_pred EEEEECcccCcCCCCCcCccHHHHHHHHHHHH-HHHHHcC----CeEEEEEeeec
Confidence 477888777665432 233344444 5566555 88888876544
No 221
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=54.97 E-value=27 Score=31.66 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=39.0
Q ss_pred ecCCeeeeCCc-c--CccHHHHHHHHHHhcCCCccccEEEE-eCCCCCCHHHHHHHHHHHhCCC
Q psy17092 12 DIDGVLVRGKQ-V--LPGVQDTFMNKLTNSGGRFVVPTVFV-TNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 12 DiDGVL~~g~~-~--ipgA~e~l~~~l~~~ggk~~i~~~~l-TNns~~~~~~~~~~L~~~lG~~ 71 (183)
+.+|+.+.|.. + .|...+.+ +++++.| +++.+. ||+++....+.++++. .+|++
T Consensus 73 ~~ggVtisGGGepl~~~~l~eLl-~~lk~~g----i~taI~~TnG~~l~~~e~~~~L~-~~gld 130 (404)
T TIGR03278 73 RDTKVTISGGGDVSCYPELEELT-KGLSDLG----LPIHLGYTSGKGFDDPEIAEFLI-DNGVR 130 (404)
T ss_pred CCCEEEEECCcccccCHHHHHHH-HHHHhCC----CCEEEeCCCCcccCCHHHHHHHH-HcCCC
Confidence 45777777753 2 56678877 9998876 888775 9988775556788887 47764
No 222
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=54.73 E-value=28 Score=25.27 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=22.5
Q ss_pred HHHhcCCCeEEEEcChhHHHHHHHCCCceeeCHHHHHhhcCC
Q psy17092 86 MLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVDSIRNAHPL 127 (183)
Q Consensus 86 ~l~~~~~k~v~viG~~~~~~~l~~~G~~~~~t~~~l~~a~p~ 127 (183)
++..+++++..+||..+-.+. -.|.++.+.+|.
T Consensus 58 i~~~fP~~kfiLIGDsgq~Dp---------eiY~~ia~~~P~ 90 (100)
T PF09949_consen 58 ILRDFPERKFILIGDSGQHDP---------EIYAEIARRFPG 90 (100)
T ss_pred HHHHCCCCcEEEEeeCCCcCH---------HHHHHHHHHCCC
Confidence 456789999999997655443 256666666654
No 223
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=54.68 E-value=24 Score=24.54 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=35.0
Q ss_pred eCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC
Q psy17092 19 RGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV 72 (183)
Q Consensus 19 ~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~ 72 (183)
+..+.+-|..+++ +.+++ | + ..++++.++.+.........+.+..++++
T Consensus 8 ragkl~~G~~~v~-kai~~-g-k--aklViiA~D~~~~~~~~i~~~c~~~~Vp~ 56 (82)
T PRK13602 8 QAKSIVIGTKQTV-KALKR-G-S--VKEVVVAEDADPRLTEKVEALANEKGVPV 56 (82)
T ss_pred hcCCEEEcHHHHH-HHHHc-C-C--eeEEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 5667888999998 99875 3 2 67889988887655544555565666664
No 224
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=54.02 E-value=69 Score=24.01 Aligned_cols=80 Identities=13% Similarity=0.255 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCCccccEEEEeCCC----CCCHHHHHHHHHHHhCCCCCccceeccHH------HH----HHHHhcCC
Q psy17092 27 VQDTFMNKLTNSGGRFVVPTVFVTNAG----NSLAADKAKQLTEWLGVEVEEDQVVMSHT------PI----KMLHKYHT 92 (183)
Q Consensus 27 A~e~l~~~l~~~ggk~~i~~~~lTNns----~~~~~~~~~~L~~~lG~~~~~~~I~ts~~------a~----~~l~~~~~ 92 (183)
...++ +.+++ | . .+.+++|-+. ..++.+.........|++ .+.|+.-.. -+ .++.+++-
T Consensus 26 ~~~a~-~L~~~-g-~--~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp--~~~I~~e~~s~~T~ena~~~~~~~~~~~~ 98 (155)
T PF02698_consen 26 LDEAA-RLYKA-G-Y--APRILFSGGYGHGDGRSEAEAMRDYLIELGVP--EERIILEPKSTNTYENARFSKRLLKERGW 98 (155)
T ss_dssp HHHHH-HHHH--H-H--T--EEEE--SSTTHTS-HHHHHHHHHHHT-----GGGEEEE----SHHHHHHHHHHHHHT-SS
T ss_pred HHHHH-HHHhc-C-C--CCeEEECCCCCCCCCCCHHHHHHHHHHhcccc--hheeEccCCCCCHHHHHHHHHHHHHhhcC
Confidence 34444 55553 2 1 4668888644 346777666655467876 455543221 11 23444555
Q ss_pred CeEEEEcCh----hHHHHHHHCCCc
Q psy17092 93 KHTLISGQG----PMEEIAKRLGFN 113 (183)
Q Consensus 93 k~v~viG~~----~~~~~l~~~G~~ 113 (183)
++++++.+. .....++.+|.+
T Consensus 99 ~~iilVT~~~H~~Ra~~~~~~~~~~ 123 (155)
T PF02698_consen 99 QSIILVTSPYHMRRARMIFRKVGPD 123 (155)
T ss_dssp S-EEEE--CCCHHHHHHHHHHHH--
T ss_pred CeEEEECCHHHHHHHHHHHHHhCCC
Confidence 788888864 444445555554
No 225
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=53.79 E-value=24 Score=35.18 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=36.2
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|.+.-.+++=|++.+++ +.|++.| +.++++|.-...+. ..+.+.+|+.
T Consensus 543 Gli~~~Dp~R~~a~~aI-~~l~~aG----I~v~miTGD~~~tA----~~IA~~lGI~ 590 (902)
T PRK10517 543 GYIAFLDPPKETTAPAL-KALKASG----VTVKILTGDSELVA----AKVCHEVGLD 590 (902)
T ss_pred ehHhhhCcchhhHHHHH-HHHHHCC----CEEEEEcCCCHHHH----HHHHHHcCCC
Confidence 44445678899999999 9999988 99999987555544 4455567874
No 226
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=53.46 E-value=24 Score=29.79 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=34.4
Q ss_pred ecCCeeeeCCccCcc---HHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHH
Q psy17092 12 DIDGVLVRGKQVLPG---VQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLT 65 (183)
Q Consensus 12 DiDGVL~~g~~~ipg---A~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~ 65 (183)
.++||-+.|+.|... +.+++ +.+++.| +++.+.||+-...+.. ++|.
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~-~~ake~G----l~~~l~TnG~~~~~~~--~~l~ 132 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLL-RAAKERG----LHVALDTNGFLPPEAL--EELL 132 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHH-HHHHHCC----CcEEEEcCCCCCHHHH--HHHH
Confidence 789999999998544 66666 7777776 9999999966554432 4454
No 227
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=53.26 E-value=36 Score=26.66 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=23.1
Q ss_pred EecCCeeeeCCcc-CccHHHHHHHHHHhcCCCccccEEEE
Q psy17092 11 FDIDGVLVRGKQV-LPGVQDTFMNKLTNSGGRFVVPTVFV 49 (183)
Q Consensus 11 fDiDGVL~~g~~~-ipgA~e~l~~~l~~~ggk~~i~~~~l 49 (183)
-|-||||+..... -.|+.-++ +..++.+ +|++++
T Consensus 62 ~DsDgTlI~~~g~l~GGt~lT~-~~a~~~~----KP~l~i 96 (145)
T PF12694_consen 62 RDSDGTLIFTRGELTGGTALTV-EFARKHG----KPCLHI 96 (145)
T ss_dssp HTSSEEEEEESSS--HHHHHHH-HHHHHTT------EEEE
T ss_pred hhcCeEEEEecCCCCcHHHHHH-HHHHHhC----CCEEEE
Confidence 4789999966544 44677777 8888766 798888
No 228
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=53.09 E-value=21 Score=27.36 Aligned_cols=38 Identities=21% Similarity=0.531 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 25 PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 25 pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|++.++| +.+++.| ++++++|.+ ...+++.+.+.+|++
T Consensus 92 ~~~~e~i-~~~~~~~----~~v~IvS~~----~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 92 PDAMELI-RELKDNG----IKVVIVSGS----PDEIIEPIAERLGID 129 (192)
T ss_dssp TTHHHHH-HHHHHTT----SEEEEEEEE----EHHHHHHHHHHTTSS
T ss_pred hhHHHHH-HHHHHCC----CEEEEECCC----cHHHHHHHHHHcCCC
Confidence 6777999 9999887 899999964 334666676678887
No 229
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=52.05 E-value=9.6 Score=35.54 Aligned_cols=20 Identities=15% Similarity=0.572 Sum_probs=16.4
Q ss_pred ceEEEEecCCeeeeCCccCc
Q psy17092 6 SFGLIFDIDGVLVRGKQVLP 25 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~ip 25 (183)
..+++||+||||.++...+|
T Consensus 8 ~~~~~fD~DGTLlrs~ssFp 27 (498)
T PLN02499 8 SYSVVSELEGTLLKDADPFS 27 (498)
T ss_pred cceEEEecccceecCCCccH
Confidence 46899999999999766554
No 230
>PRK10494 hypothetical protein; Provisional
Probab=52.00 E-value=1.5e+02 Score=25.07 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=45.6
Q ss_pred ccEEEEeCCCC----CCHHHHHHHHHHHhCCCCCccceecc------HHHHHHHHh-cCCCeEEEEcCh----hHHHHHH
Q psy17092 44 VPTVFVTNAGN----SLAADKAKQLTEWLGVEVEEDQVVMS------HTPIKMLHK-YHTKHTLISGQG----PMEEIAK 108 (183)
Q Consensus 44 i~~~~lTNns~----~~~~~~~~~L~~~lG~~~~~~~I~ts------~~a~~~l~~-~~~k~v~viG~~----~~~~~l~ 108 (183)
.+.+++|.+.+ .++.++.+++...+|++. +.|+.. ..-+...++ .+.+++++|.+. .....++
T Consensus 121 ~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~--~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTsa~Hm~RA~~~f~ 198 (259)
T PRK10494 121 GAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPR--EDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQ 198 (259)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCH--HHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHH
Confidence 35677787543 467788777766788873 344332 222223322 244568888764 4445678
Q ss_pred HCCCceeeCHHHHH
Q psy17092 109 RLGFNKVVTVDSIR 122 (183)
Q Consensus 109 ~~G~~~~~t~~~l~ 122 (183)
..|++.+-..-++.
T Consensus 199 ~~Gl~v~p~Ptd~~ 212 (259)
T PRK10494 199 QEGLNPLPAPANQL 212 (259)
T ss_pred HcCCceeecCCcce
Confidence 89998765554543
No 231
>KOG0733|consensus
Probab=50.58 E-value=47 Score=32.29 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=33.5
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEE------EEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTV------FVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~------~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|||++|-+ |.-.+++...- .|++++||+ +++.-+|-+++.+.+.+.++.+..
T Consensus 225 GvLlHGPP---GCGKT~lA~Ai--Agel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~a 282 (802)
T KOG0733|consen 225 GVLLHGPP---GCGKTSLANAI--AGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNA 282 (802)
T ss_pred ceeeeCCC---CccHHHHHHHH--hhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccC
Confidence 88888865 43333212221 235668874 677788999998888887766653
No 232
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=50.52 E-value=51 Score=31.39 Aligned_cols=103 Identities=22% Similarity=0.356 Sum_probs=65.7
Q ss_pred CCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHH---HHHHh-
Q psy17092 14 DGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPI---KMLHK- 89 (183)
Q Consensus 14 DGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~---~~l~~- 89 (183)
=||++.-+-.-||-.|-+ ..|++.| ++.+.+|.....+...++ +..|++ +++-..+|- .++++
T Consensus 439 ~GVI~LkDivK~Gi~ERf-~elR~Mg----IkTvM~TGDN~~TAa~IA----~EAGVD----dfiAeatPEdK~~~I~~e 505 (681)
T COG2216 439 LGVIYLKDIVKPGIKERF-AELRKMG----IKTVMITGDNPLTAAAIA----AEAGVD----DFIAEATPEDKLALIRQE 505 (681)
T ss_pred EEEEEehhhcchhHHHHH-HHHHhcC----CeEEEEeCCCHHHHHHHH----HHhCch----hhhhcCChHHHHHHHHHH
Confidence 378888888899999999 9999988 999999987777665443 457776 444444443 23443
Q ss_pred -cCCCeEEEEcCh-hHHHHH--HHCCCceeeCHHHHHhhcCCCc
Q psy17092 90 -YHTKHTLISGQG-PMEEIA--KRLGFNKVVTVDSIRNAHPLLD 129 (183)
Q Consensus 90 -~~~k~v~viG~~-~~~~~l--~~~G~~~~~t~~~l~~a~p~l~ 129 (183)
-++|.|-..|.+ ...-.| .++|...+-.-.--.+|-..+|
T Consensus 506 Q~~grlVAMtGDGTNDAPALAqAdVg~AMNsGTqAAkEAaNMVD 549 (681)
T COG2216 506 QAEGRLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVD 549 (681)
T ss_pred HhcCcEEEEcCCCCCcchhhhhcchhhhhccccHHHHHhhcccc
Confidence 356788888864 111111 2566655544444455555544
No 233
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=49.82 E-value=88 Score=26.20 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=13.3
Q ss_pred hhhcccc-ccCCCCCCCCccccc
Q psy17092 153 SELKITD-RSLDHKAKIGRSEAT 174 (183)
Q Consensus 153 ~~l~~~~-~~l~~~~~~~~~~~~ 174 (183)
++.++.- +|++.=|-+|.+.+.
T Consensus 259 ~~~g~~vP~disvigfD~~~~~~ 281 (331)
T PRK14987 259 QRLGLKVPDDMAIAGFHGHDIGQ 281 (331)
T ss_pred HHcCCCCCCccEEEeeCCchhhh
Confidence 3566653 467777777765443
No 234
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=49.26 E-value=37 Score=30.72 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=29.7
Q ss_pred EecCCeeeeCCcc---Ccc-HHHHHHHHHHh-cCCCccccEEEE-eCCCCC---CHHHHHHHHH
Q psy17092 11 FDIDGVLVRGKQV---LPG-VQDTFMNKLTN-SGGRFVVPTVFV-TNAGNS---LAADKAKQLT 65 (183)
Q Consensus 11 fDiDGVL~~g~~~---ipg-A~e~l~~~l~~-~ggk~~i~~~~l-TNns~~---~~~~~~~~L~ 65 (183)
+++||||+...+. ..+ ..... +.+++ .| +|++.+ |..+.. +.+++..++.
T Consensus 349 ~~aDGVI~~~~~~C~~~~~e~~~~~-~~l~e~~G----IP~L~iE~D~~d~r~~d~gQ~~TRiE 407 (413)
T TIGR02260 349 YEADGLLINSIKSCNSFSAGQLLMM-REIEKRTG----KPAAFIETDLVDPRYFSAANVKNRLE 407 (413)
T ss_pred hCCCEEEEeccCCCCcchhhhHHHH-HHHHHHcC----CCEEEEEcCCCCcccCCHHHHHHHHH
Confidence 4678998877653 333 33333 55655 45 897777 666555 5566555554
No 235
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=48.64 E-value=89 Score=28.19 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=39.7
Q ss_pred ccccEEEEeC-CCCCCHHHHHHHHHHHhCCCCCccceeccHH-HHH-HH---HhcCCCeEEEEcCh----hHHHHHHHCC
Q psy17092 42 FVVPTVFVTN-AGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-PIK-ML---HKYHTKHTLISGQG----PMEEIAKRLG 111 (183)
Q Consensus 42 ~~i~~~~lTN-ns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-a~~-~l---~~~~~k~v~viG~~----~~~~~l~~~G 111 (183)
|++|++.+.. .+-.........+.+.+|.++. +.+..... ... ++ ....++++++.|.+ ++.+.+.++|
T Consensus 245 ~giP~~~~~~P~G~~~t~~~l~~l~~~~g~~~~-~~i~~~~~~~~~~~~d~~~~l~gkrv~v~g~~~~~~~l~~~L~elG 323 (429)
T cd03466 245 FGIPNYRLPLPIGLRATDEFMSLLSKLTGKPIP-EKYTRERGRLLDAMIDAHKYNFGRKAAIYGEPDFVVAITRFVLENG 323 (429)
T ss_pred HCCCeeecCCCcChHHHHHHHHHHHHHHCCCcC-HHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHHHHHHHHCC
Confidence 5588665543 2333444455666666776642 22211111 111 11 12367899999975 4566778899
Q ss_pred Cce
Q psy17092 112 FNK 114 (183)
Q Consensus 112 ~~~ 114 (183)
++.
T Consensus 324 ~~~ 326 (429)
T cd03466 324 MVP 326 (429)
T ss_pred CEE
Confidence 885
No 236
>KOG3107|consensus
Probab=48.60 E-value=45 Score=30.41 Aligned_cols=81 Identities=21% Similarity=0.221 Sum_probs=48.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHH-----H-HHHhcCCCeEEE-EcCh-hHHHHHHHCCC--ceee
Q psy17092 47 VFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPI-----K-MLHKYHTKHTLI-SGQG-PMEEIAKRLGF--NKVV 116 (183)
Q Consensus 47 ~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~-----~-~l~~~~~k~v~v-iG~~-~~~~~l~~~G~--~~~~ 116 (183)
++||+..-.+. +++.|.-.+|--+.-|+|+++...- . +..+|..|.+|| ||.+ .....++...+ =.+-
T Consensus 374 VlvTttqLipa--laKvLL~gLg~~fpiENIYSa~kiGKescFerI~~RFg~K~~yvvIgdG~eee~aAK~ln~PfwrI~ 451 (468)
T KOG3107|consen 374 VLVTTTQLIPA--LAKVLLYGLGSSFPIENIYSATKIGKESCFERIQSRFGRKVVYVVIGDGVEEEQAAKALNMPFWRIS 451 (468)
T ss_pred EEEeccchhHH--HHHHHHHhcCCcccchhhhhhhhccHHHHHHHHHHHhCCceEEEEecCcHHHHHHHHhhCCceEeec
Confidence 78888665554 3454443455557889999986432 2 335677676665 4555 23333455554 3344
Q ss_pred CHHHHHhhcCCCc
Q psy17092 117 TVDSIRNAHPLLD 129 (183)
Q Consensus 117 t~~~l~~a~p~l~ 129 (183)
+-.|+...++.|+
T Consensus 452 ~h~Dl~~l~~aL~ 464 (468)
T KOG3107|consen 452 SHSDLDALYSALE 464 (468)
T ss_pred cCccHHHHhhhcc
Confidence 5567777777775
No 237
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=48.40 E-value=50 Score=33.74 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=36.5
Q ss_pred EecCCeeeeCCccCccHHHHHHHHHHh--cCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC-Cccceecc
Q psy17092 11 FDIDGVLVRGKQVLPGVQDTFMNKLTN--SGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV-EEDQVVMS 80 (183)
Q Consensus 11 fDiDGVL~~g~~~ipgA~e~l~~~l~~--~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~-~~~~I~ts 80 (183)
+|||+| .| ...+.+.|++.+++ ..+. +-|++. +||+..++.+.|. ..|++. .+|-++++
T Consensus 777 ~D~d~~--~~---~~~~l~~~~~~~~~~~~~~~--igfv~a---TGR~l~~~~~~l~-~~~lp~~~PD~lI~~ 838 (1050)
T TIGR02468 777 VDCYDD--KD---LLQIIKNIFEAVRKERMEGS--SGFILS---TSMTISEIQSFLK-SGGLNPTDFDALICN 838 (1050)
T ss_pred eccCCC--CC---hHHHHHHHHHHHhccccCCc--eEEEEE---cCCCHHHHHHHHH-hCCCCCCCCCEEEeC
Confidence 799998 22 22333333266652 2212 345555 5788998888787 699985 67776665
No 238
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=47.90 E-value=68 Score=22.39 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=34.5
Q ss_pred CceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 5 PSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+.+.+++|+-||=+-+...+.--.+.+ +.+++.| +.+. ++|-+ ....+.|. ..|+.
T Consensus 38 ~~~~vilDls~v~~iDssgi~~L~~~~-~~~~~~g----~~l~-l~~~~----~~v~~~l~-~~gl~ 93 (106)
T TIGR02886 38 PIKHLILNLKNVTFMDSSGLGVILGRY-KKIKNEG----GEVI-VCNVS----PAVKRLFE-LSGLF 93 (106)
T ss_pred CCCEEEEECCCCcEecchHHHHHHHHH-HHHHHcC----CEEE-EEeCC----HHHHHHHH-HhCCc
Confidence 457899999999888777554444555 7777766 4444 44422 22345554 57765
No 239
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=47.39 E-value=52 Score=30.74 Aligned_cols=81 Identities=17% Similarity=0.324 Sum_probs=48.4
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHH-----HHH-HhcCCCeEEEEcCh----h
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPI-----KML-HKYHTKHTLISGQG----P 102 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~-----~~l-~~~~~k~v~viG~~----~ 102 (183)
+.|++ +|++|++-+.=.+-......+..+.+.+|+....+.++...... ..+ .++.+|++.+.|.+ .
T Consensus 266 ~~Lee---r~GiP~~~~~~~Gi~~Td~~Lr~la~~~g~~~~~e~~I~~e~~~~r~~Ld~~~~~L~GKrvai~~gg~~~~~ 342 (513)
T TIGR01861 266 NELRK---RYGIPRLDIDGFGFEPLAASLRKVAMFFGIEDEAQAIIDEETARWKPELDWYKERLKGKKVCLWPGGSKLWH 342 (513)
T ss_pred HHHHH---HhCCCeEecCcCCHHHHHHHHHHHHHHhCCChhHhHhhHHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHH
Confidence 44554 46699876553344445556677777788764444555443221 212 34578999888765 3
Q ss_pred HHHHHH-HCCCceee
Q psy17092 103 MEEIAK-RLGFNKVV 116 (183)
Q Consensus 103 ~~~~l~-~~G~~~~~ 116 (183)
+...+. ++|++.+.
T Consensus 343 ~~~~l~~ElGmevv~ 357 (513)
T TIGR01861 343 WAHVIEEEMGLKVVS 357 (513)
T ss_pred HHHHHHHhCCCEEEE
Confidence 444566 69988765
No 240
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=47.23 E-value=66 Score=29.38 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=47.1
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHH--HHH----HhcCCCeEEEEcCh----h
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPI--KML----HKYHTKHTLISGQG----P 102 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~--~~l----~~~~~k~v~viG~~----~ 102 (183)
+.|++ +|++|++.+.=.+-.........+.+.+|++...+.++...... ..+ ..+.+|++.+.+.+ .
T Consensus 263 ~~Le~---~~GiP~~~~~~~G~~~T~~~l~~ia~~~g~~~~~e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~~~~~ 339 (457)
T TIGR01284 263 NELEE---RYGIPRLDIDFFGFEYCAKNLRKIGEFFGIEERAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGPKLWH 339 (457)
T ss_pred HHHHH---HhCCCeEecccCCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcHHHH
Confidence 55654 35599876643333444456677888888775444444433211 122 23578999888655 3
Q ss_pred HHHHHH-HCCCcee
Q psy17092 103 MEEIAK-RLGFNKV 115 (183)
Q Consensus 103 ~~~~l~-~~G~~~~ 115 (183)
+...+. ++|++.+
T Consensus 340 l~~~l~~ElGmevv 353 (457)
T TIGR01284 340 WPRPLEDELGMEVV 353 (457)
T ss_pred HHHHHHHhCCCEEE
Confidence 445564 7998764
No 241
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=47.19 E-value=1.1e+02 Score=23.96 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=47.3
Q ss_pred ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHHHHHhc-CCCeEEEEcChhH
Q psy17092 25 PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIKMLHKY-HTKHTLISGQGPM 103 (183)
Q Consensus 25 pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~~l~~~-~~k~v~viG~~~~ 103 (183)
..+.+.+ +.|.... +++-++.+++....... ...+.+.+|+++..-.+-+....-..+.+. ....-.++|....
T Consensus 61 ~s~~Dil-~al~~a~-~~~~~Iavv~~~~~~~~---~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~ 135 (176)
T PF06506_consen 61 ISGFDIL-RALAKAK-KYGPKIAVVGYPNIIPG---LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVV 135 (176)
T ss_dssp --HHHHH-HHHHHCC-CCTSEEEEEEESS-SCC---HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHH
T ss_pred CCHhHHH-HHHHHHH-hcCCcEEEEecccccHH---HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHH
Confidence 3456666 7776543 34456777766554443 334555678876433333222222334321 2234567777778
Q ss_pred HHHHHHCCCceeeC
Q psy17092 104 EEIAKRLGFNKVVT 117 (183)
Q Consensus 104 ~~~l~~~G~~~~~t 117 (183)
.+.++.+|+..++-
T Consensus 136 ~~~A~~~gl~~v~i 149 (176)
T PF06506_consen 136 CRLARKLGLPGVLI 149 (176)
T ss_dssp HHHHHHTTSEEEES
T ss_pred HHHHHHcCCcEEEE
Confidence 89999999987653
No 242
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=47.05 E-value=34 Score=30.62 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=41.0
Q ss_pred EEEEecCCeeeeC-Ccc----C-ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC--CCccceec
Q psy17092 8 GLIFDIDGVLVRG-KQV----L-PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE--VEEDQVVM 79 (183)
Q Consensus 8 ~iifDiDGVL~~g-~~~----i-pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~--~~~~~I~t 79 (183)
.|+=|+|||..-- +-| + +.-..+. +.|. -.|+++||+--.-+.-+-..+.+++|-. ...+..|.
T Consensus 4 LivQDLDGVCm~LVkDPltR~ld~~Yv~A~-~~l~-------~~F~VLTnGEHeG~RGVNriVE~Alg~~~~~~~~GLYL 75 (381)
T PF09506_consen 4 LIVQDLDGVCMPLVKDPLTRRLDPDYVRAA-RQLE-------GHFYVLTNGEHEGRRGVNRIVERALGDTETPKEEGLYL 75 (381)
T ss_pred eEEecCCccchhhccCccccccCHHHHHHH-HHhc-------CcEEEEeCCcccCccchHHHHHHHcCCcchhhhccccc
Confidence 5888999998732 222 2 2222333 3332 3689999985444444444455677754 35667787
Q ss_pred cHHHHH
Q psy17092 80 SHTPIK 85 (183)
Q Consensus 80 s~~a~~ 85 (183)
++-|+-
T Consensus 76 pGLAAg 81 (381)
T PF09506_consen 76 PGLAAG 81 (381)
T ss_pred cccccc
Confidence 776663
No 243
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=46.96 E-value=67 Score=28.01 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=29.8
Q ss_pred ceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCC
Q psy17092 6 SFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGN 54 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~ 54 (183)
.+.+.|-.+| --++.|.--+.+ +.+++.|+ ++.++|||++-
T Consensus 80 pd~vtis~~G----EPTLy~~L~elI-~~~k~~g~---~~tflvTNgsl 120 (296)
T COG0731 80 PDHVTISLSG----EPTLYPNLGELI-EEIKKRGK---KTTFLVTNGSL 120 (296)
T ss_pred CCEEEEeCCC----CcccccCHHHHH-HHHHhcCC---ceEEEEeCCCh
Confidence 3455555555 345678888888 99998773 59999999775
No 244
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=46.70 E-value=68 Score=29.07 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=41.7
Q ss_pred HHHHhcCCCccccEEEEeC-CCCCCHHHHHHHHHHHhCCCCCccceeccH--HHHHHH----HhcCCCeEEEEcCh----
Q psy17092 33 NKLTNSGGRFVVPTVFVTN-AGNSLAADKAKQLTEWLGVEVEEDQVVMSH--TPIKML----HKYHTKHTLISGQG---- 101 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTN-ns~~~~~~~~~~L~~~lG~~~~~~~I~ts~--~a~~~l----~~~~~k~v~viG~~---- 101 (183)
+.|++ +|++|++.+.. .+-.......+.|.+.+|.++.. .+... .....+ ....++++.+.|.+
T Consensus 250 ~~Lee---~~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~--~~~~~r~~~~~~l~~~~~~l~Gkrvai~~~~~~~~ 324 (432)
T TIGR01285 250 SLLAD---RCGVPYIVFPSLMGLEAVDAFLHVLMKISGRAVPE--RFERQRRQLQDAMLDTHFFLGGKKVAIAAEPDLLA 324 (432)
T ss_pred HHHHH---HHCCCeEecCCCcChHHHHHHHHHHHHHHCCCccH--HHHHHHHHHHHHHHHHHHhhCCCEEEEEcCHHHHH
Confidence 44544 35578765532 23334444566677677765421 11111 111111 13468999888875
Q ss_pred hHHHHHHHCCCcee
Q psy17092 102 PMEEIAKRLGFNKV 115 (183)
Q Consensus 102 ~~~~~l~~~G~~~~ 115 (183)
++...+.++|++..
T Consensus 325 ~l~~~l~elGm~v~ 338 (432)
T TIGR01285 325 AWATFFTSMGAQIV 338 (432)
T ss_pred HHHHHHHHCCCEEE
Confidence 44566789998764
No 245
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=46.34 E-value=57 Score=29.12 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=46.1
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC---CccceeccHH--HHHHH----HhcCCCeEEEEcCh--
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV---EEDQVVMSHT--PIKML----HKYHTKHTLISGQG-- 101 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~---~~~~I~ts~~--a~~~l----~~~~~k~v~viG~~-- 101 (183)
+.|++ +|++|++..+=.+-....+..+.+.+.+|.+. ..++++.... ....+ ..+.++++.+.|.+
T Consensus 222 ~~L~~---~fGip~~~~~p~G~~~t~~~l~~ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~ 298 (410)
T cd01968 222 RKMEE---KYGIPYIEVSFYGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELAPYRARLEGKKAALYTGGVK 298 (410)
T ss_pred HHHHH---HhCCCeEecCcCcHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 55654 35589776532333344455666777778752 1233333221 11122 23578999888764
Q ss_pred --hHHHHHHHCCCceeeC
Q psy17092 102 --PMEEIAKRLGFNKVVT 117 (183)
Q Consensus 102 --~~~~~l~~~G~~~~~t 117 (183)
++.+.++++|++.+..
T Consensus 299 ~~~la~~l~elGm~v~~~ 316 (410)
T cd01968 299 SWSLVSALQDLGMEVVAT 316 (410)
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 5566778999986543
No 246
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.64 E-value=90 Score=26.59 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=31.5
Q ss_pred CceEEEEecC--------------CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCC
Q psy17092 5 PSFGLIFDID--------------GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNA 52 (183)
Q Consensus 5 ~~~~iifDiD--------------GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNn 52 (183)
+.++|.+|+| |+.--..+.+|...+.+ +.|++.| +++++..+-
T Consensus 40 P~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi-~~Lh~~G----~k~v~~v~P 96 (292)
T cd06595 40 PLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLL-QDLHDRG----LKVTLNLHP 96 (292)
T ss_pred CccEEEEecccccccccccccCCcceeEEChhcCCCHHHHH-HHHHHCC----CEEEEEeCC
Confidence 5689999987 12233356799999988 9999987 777666654
No 247
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=45.52 E-value=35 Score=30.63 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=41.2
Q ss_pred eEEEEecCCeeeeC-Ccc-----CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC--CCcccee
Q psy17092 7 FGLIFDIDGVLVRG-KQV-----LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE--VEEDQVV 78 (183)
Q Consensus 7 ~~iifDiDGVL~~g-~~~-----ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~--~~~~~I~ 78 (183)
=.|+=|+|||..-- +-| -+.-..+. +.|. -.|+++||+--.-+.-+-..+.+++|-. ...+..|
T Consensus 9 lLiVQDLDGVCmpLVkDPltR~ld~~Yv~A~-~~l~-------~~F~VLTnGEHeG~RGVNriVE~al~~~~~~~~~GLY 80 (389)
T TIGR02399 9 LLIVQDLDGVCIPLVKDPLTRKLDSKYVFAV-KNLE-------KEFYVLTNGEHEGPRGVNRIVERSLGDIDQPKEKGLY 80 (389)
T ss_pred eEEEecCCccchhhccCcccccCCHHHHHHH-HHhc-------CcEEEEeCCcccCccchHHHHHHHcCCccchhhhccc
Confidence 35888999998721 222 22233333 3332 3689999985444444444455677654 3456777
Q ss_pred ccHHHHH
Q psy17092 79 MSHTPIK 85 (183)
Q Consensus 79 ts~~a~~ 85 (183)
.++-|+-
T Consensus 81 LPGLAAg 87 (389)
T TIGR02399 81 LPGLAAG 87 (389)
T ss_pred ccccccc
Confidence 7776663
No 248
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=45.44 E-value=80 Score=28.46 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=41.4
Q ss_pred ccccEEEEe-CCCCCCHHHHHHHHHHHhCCCCCccceeccH-HHHHHH----HhcCCCeEEEEcCh----hHHHHHHHCC
Q psy17092 42 FVVPTVFVT-NAGNSLAADKAKQLTEWLGVEVEEDQVVMSH-TPIKML----HKYHTKHTLISGQG----PMEEIAKRLG 111 (183)
Q Consensus 42 ~~i~~~~lT-Nns~~~~~~~~~~L~~~lG~~~~~~~I~ts~-~a~~~l----~~~~~k~v~viG~~----~~~~~l~~~G 111 (183)
|++|++.+. --+-.........+.+.+|.++ ++.+.... .....+ ..+.++++.+.|.+ ++...+.++|
T Consensus 245 ~GiP~~~~~~p~G~~~T~~~L~~la~~~g~~~-~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~l~~~L~ElG 323 (417)
T cd01966 245 TGVPYYVFPSLTGLEAVDALIATLAKLSGRPV-PEKIRRQRAQLQDAMLDGHFYLGGKRVAIALEPDLLAALSSFLAEMG 323 (417)
T ss_pred HCCCeeecCCCcchHHHHHHHHHHHHHHCCCc-CHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCHHHHHHHHHHHHHCC
Confidence 557876553 2233344555666776777765 23332221 111111 13468899888875 4556678999
Q ss_pred Cceee
Q psy17092 112 FNKVV 116 (183)
Q Consensus 112 ~~~~~ 116 (183)
+....
T Consensus 324 ~~~~~ 328 (417)
T cd01966 324 AEIVA 328 (417)
T ss_pred CEEEE
Confidence 87643
No 249
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=44.95 E-value=64 Score=28.27 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=34.1
Q ss_pred eeeeCCcc--CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 16 VLVRGKQV--LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 16 VL~~g~~~--ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+.+.|++| .|...+.+ +++++.| +.+.+.||+...+.+ .++.|. ..|+.
T Consensus 66 v~~~GGEPll~~~~~~il-~~~~~~g----~~~~i~TNG~ll~~~-~~~~L~-~~g~~ 116 (378)
T PRK05301 66 LHFSGGEPLLRKDLEELV-AHARELG----LYTNLITSGVGLTEA-RLAALK-DAGLD 116 (378)
T ss_pred EEEECCccCCchhHHHHH-HHHHHcC----CcEEEECCCccCCHH-HHHHHH-HcCCC
Confidence 44556655 36677766 8888766 778899998877765 467787 47764
No 250
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=44.51 E-value=68 Score=27.79 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=34.6
Q ss_pred eeeeCCcc--CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 16 VLVRGKQV--LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 16 VL~~g~~~--ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+.+.|++| .|+..+.+ +.+++.| +.+.+.||+...+.+ .++.|. ..|+.
T Consensus 57 v~~~GGEPll~~~~~~ii-~~~~~~g----~~~~l~TNG~ll~~e-~~~~L~-~~g~~ 107 (358)
T TIGR02109 57 LHFSGGEPLARPDLVELV-AHARRLG----LYTNLITSGVGLTEA-RLDALA-DAGLD 107 (358)
T ss_pred EEEeCccccccccHHHHH-HHHHHcC----CeEEEEeCCccCCHH-HHHHHH-hCCCC
Confidence 44566555 46677777 8888766 778899998877765 577787 46664
No 251
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=43.94 E-value=62 Score=26.43 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=31.7
Q ss_pred cCCeeeeCCccCcc--H-HHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHH
Q psy17092 13 IDGVLVRGKQVLPG--V-QDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLT 65 (183)
Q Consensus 13 iDGVL~~g~~~ipg--A-~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~ 65 (183)
.+||.+.|++|+-. . .+++ +.+++.| +++.+.||+......+.++.+.
T Consensus 71 ~~~V~~sGGEPll~~~~~~~l~-~~~k~~g----~~i~l~TNG~~~~~~~~~~~ll 121 (246)
T PRK11145 71 GGGVTASGGEAILQAEFVRDWF-RACKKEG----IHTCLDTNGFVRRYDPVIDELL 121 (246)
T ss_pred CCeEEEeCccHhcCHHHHHHHH-HHHHHcC----CCEEEECCCCCCcchHHHHHHH
Confidence 46888888887544 2 3666 8888776 7889999977542223444443
No 252
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=43.43 E-value=57 Score=22.67 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=32.1
Q ss_pred CceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 5 PSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
..+.+++|+.++=+-+...+.--.++. +.+++.| ..+.++ |-+ ....+.|. ..|+.
T Consensus 42 ~~~~vvidls~v~~iDssgl~~L~~~~-~~~~~~~----~~~~l~-~~~----~~~~~~l~-~~~l~ 97 (108)
T TIGR00377 42 GPRPIVLDLEDLEFMDSSGLGVLLGRY-KQVRRVG----GQLVLV-SVS----PRVARLLD-ITGLL 97 (108)
T ss_pred CCCeEEEECCCCeEEccccHHHHHHHH-HHHHhcC----CEEEEE-eCC----HHHHHHHH-HhChh
Confidence 567899999998887766443334444 5666655 444444 322 12344444 57765
No 253
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=43.10 E-value=1.2e+02 Score=25.33 Aligned_cols=14 Identities=21% Similarity=0.057 Sum_probs=9.3
Q ss_pred cCCCCCCCCccccc
Q psy17092 161 SLDHKAKIGRSEAT 174 (183)
Q Consensus 161 ~l~~~~~~~~~~~~ 174 (183)
|++.=|.++.+.+.
T Consensus 281 di~vigfd~~~~~~ 294 (342)
T PRK10014 281 QVALAAFTDVPEAE 294 (342)
T ss_pred ceEEEEecCchHHh
Confidence 67777777765543
No 254
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=42.53 E-value=43 Score=28.15 Aligned_cols=78 Identities=15% Similarity=0.073 Sum_probs=51.0
Q ss_pred CCeEEEEcChhHHHHHHHCCCceeeCHHHHHhhcCCCcccccccccccCcchhhhHHHHHhhhhccccccCCCCCCCCcc
Q psy17092 92 TKHTLISGQGPMEEIAKRLGFNKVVTVDSIRNAHPLLDCVDHRRRVSLFPRYCSRAQSLLSSELKITDRSLDHKAKIGRS 171 (183)
Q Consensus 92 ~k~v~viG~~~~~~~l~~~G~~~~~t~~~l~~a~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 171 (183)
..+|.|++.+...++++++|-+.+.+ +|+.+..-.-.|.+. .. + .+-..++...+.--.-|.|+|.-=.|
T Consensus 72 ~vrV~Vfa~g~~~~~A~~AGad~Vg~-edl~e~ik~~r~~~f-D~------~--IAtpdmM~~v~~LG~vLGPRGlMP~P 141 (228)
T COG0081 72 TVRVAVFADGEKAEEAKAAGADYVGG-EDLIELIKNGRAKDF-DV------F--IATPDMMPLVGKLGKVLGPRGLMPNP 141 (228)
T ss_pred ccEEEEEcChHhHHHHHHcCCCEecH-HHHHHHHhCcchhcC-CE------E--EECchHHHHHHHHhhhcCCCCCCCCC
Confidence 35899999999999999999999998 888766544322211 11 1 11111222223334568899999888
Q ss_pred cccccccc
Q psy17092 172 EATTHTIE 179 (183)
Q Consensus 172 ~~~~~~~~ 179 (183)
++.|.+..
T Consensus 142 k~gTvt~D 149 (228)
T COG0081 142 KTGTVTDD 149 (228)
T ss_pred CCCCCCcC
Confidence 88777654
No 255
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=42.36 E-value=1.2e+02 Score=23.51 Aligned_cols=16 Identities=6% Similarity=-0.025 Sum_probs=8.3
Q ss_pred HHHHHhcCCCeEEEEc
Q psy17092 84 IKMLHKYHTKHTLISG 99 (183)
Q Consensus 84 ~~~l~~~~~k~v~viG 99 (183)
+.++.+...+++.+++
T Consensus 110 ~~~l~~~g~~~i~~i~ 125 (264)
T cd01537 110 GEHLAEKGHRRIALLA 125 (264)
T ss_pred HHHHHHhcCCcEEEEE
Confidence 3455444456666554
No 256
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=42.13 E-value=76 Score=27.40 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=31.0
Q ss_pred CceEEEEecC-----C--eeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeC
Q psy17092 5 PSFGLIFDID-----G--VLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51 (183)
Q Consensus 5 ~~~~iifDiD-----G--VL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTN 51 (183)
+.++|.+|+| | ..--..+.+|...+++ +.|+++| +++++..+
T Consensus 39 P~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi-~~L~~~G----~kv~~~i~ 87 (319)
T cd06591 39 PLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMV-RELHEMN----AELMISIW 87 (319)
T ss_pred CccEEEEechhhcCCCceeEEEChhhCCCHHHHH-HHHHHCC----CEEEEEec
Confidence 5689999986 3 4434456789999988 9999988 67655443
No 257
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=41.45 E-value=60 Score=30.14 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=42.5
Q ss_pred eEEEEecCCeeeeCC-ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCH---HHHHHHHHHHhCCCCC
Q psy17092 7 FGLIFDIDGVLVRGK-QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLA---ADKAKQLTEWLGVEVE 73 (183)
Q Consensus 7 ~~iifDiDGVL~~g~-~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~---~~~~~~L~~~lG~~~~ 73 (183)
=|++.-.||++-.=. .-+-.|-+-.++.|++.| +||+++-|...... .++++.|.+++++++-
T Consensus 147 IGiVVTTDGSi~dipRe~Y~eAEervI~ELk~ig----KPFvillNs~~P~s~et~~L~~eL~ekY~vpVl 213 (492)
T PF09547_consen 147 IGIVVTTDGSITDIPRENYVEAEERVIEELKEIG----KPFVILLNSTKPYSEETQELAEELEEKYDVPVL 213 (492)
T ss_pred eeEEEecCCCccCCChHHHHHHHHHHHHHHHHhC----CCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 468888899887432 234444443448898877 89999998764433 3456778888888753
No 258
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=40.99 E-value=30 Score=28.07 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=30.6
Q ss_pred EEEEecCCeeeeCCccCccHHHHHHHHHH-hcCCCccccEEEEeCCCCCCHHHHHHH
Q psy17092 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLT-NSGGRFVVPTVFVTNAGNSLAADKAKQ 63 (183)
Q Consensus 8 ~iifDiDGVL~~g~~~ipgA~e~l~~~l~-~~ggk~~i~~~~lTNns~~~~~~~~~~ 63 (183)
-+.+||||||....+.+|---.++ +... +.. .--+-++--...+.+++.+-
T Consensus 8 ~~ciDIDGtit~~~t~~~~~n~~f-~kslse~d----~t~y~lhkil~i~~ee~~k~ 59 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPYLNPAF-EKSLSEAD----PTDYDLHKILNITTEEFWKW 59 (194)
T ss_pred heeeccCCceecCcccchhccHHH-Hhhhhhcc----cccccHHHHhCccHHHHHHH
Confidence 367999999999988777655555 4332 222 11244555555666665443
No 259
>PRK06186 hypothetical protein; Validated
Probab=39.75 E-value=26 Score=29.37 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=28.4
Q ss_pred EEEecCCeeeeC---CccCccHHHHHHHHHHhcCCCccccEEEE
Q psy17092 9 LIFDIDGVLVRG---KQVLPGVQDTFMNKLTNSGGRFVVPTVFV 49 (183)
Q Consensus 9 iifDiDGVL~~g---~~~ipgA~e~l~~~l~~~ggk~~i~~~~l 49 (183)
.+-++||+|+-| .+-++|...++ ++.++++ +|++=+
T Consensus 50 ~l~~~dgilvpgGfg~rg~~Gki~ai-~~Are~~----iP~LGI 88 (229)
T PRK06186 50 DLAGFDGIWCVPGSPYRNDDGALTAI-RFARENG----IPFLGT 88 (229)
T ss_pred hHhhCCeeEeCCCCCcccHhHHHHHH-HHHHHcC----CCeEee
Confidence 356889999964 56788999999 9999887 896433
No 260
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=39.42 E-value=1.2e+02 Score=25.21 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=16.2
Q ss_pred HHHHHHhcCCCeEEEEcCh-----------hHHHHHHHCCCc
Q psy17092 83 PIKMLHKYHTKHTLISGQG-----------PMEEIAKRLGFN 113 (183)
Q Consensus 83 a~~~l~~~~~k~v~viG~~-----------~~~~~l~~~G~~ 113 (183)
++.+|.....+++.+++.. ++.+.+++.|..
T Consensus 170 a~~~L~~~G~r~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 211 (328)
T PRK11303 170 LAESLLKFPAESILLLGALPELSVSFEREQGFRQALKDDPRE 211 (328)
T ss_pred HHHHHHHCCCCeEEEEeCccccccHHHHHHHHHHHHHHcCCC
Confidence 4445544445667666531 344555666653
No 261
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=39.22 E-value=1e+02 Score=28.10 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=43.4
Q ss_pred HHHHhcCCCccccEEEEeC-CCCCCHHHHHHHHHHHhCCCCCccceeccH--HHHHHH----HhcCCCeEEEEcCh----
Q psy17092 33 NKLTNSGGRFVVPTVFVTN-AGNSLAADKAKQLTEWLGVEVEEDQVVMSH--TPIKML----HKYHTKHTLISGQG---- 101 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTN-ns~~~~~~~~~~L~~~lG~~~~~~~I~ts~--~a~~~l----~~~~~k~v~viG~~---- 101 (183)
+.|++ +|++|++.+.. -+-....+....|.+.+|.++. +.+... .....+ ....++++.+.|.+
T Consensus 250 ~~Lee---~~GiP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~--~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~ 324 (455)
T PRK14476 250 EALEA---RTGVPYLVFPSLTGLEAVDRFIATLAQISGRPVP--AKYRRQRAQLQDAMLDGHFYFGGKRVAIAAEPDLLL 324 (455)
T ss_pred HHHHH---HhCCCeEecCCCcChHHHHHHHHHHHHHHCCCCc--HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCHHHHH
Confidence 55554 35588765532 2333445556667777776542 122111 111111 12468899888865
Q ss_pred hHHHHHHHCCCceee
Q psy17092 102 PMEEIAKRLGFNKVV 116 (183)
Q Consensus 102 ~~~~~l~~~G~~~~~ 116 (183)
++...+.++|+....
T Consensus 325 ~la~~L~elG~~v~~ 339 (455)
T PRK14476 325 ALGSFLAEMGAEIVA 339 (455)
T ss_pred HHHHHHHHCCCEEEE
Confidence 455667899987643
No 262
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=38.88 E-value=1.1e+02 Score=27.46 Aligned_cols=81 Identities=21% Similarity=0.380 Sum_probs=46.7
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHH-H-HHH----HhcCCCeEEEEcCh----h
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTP-I-KML----HKYHTKHTLISGQG----P 102 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a-~-~~l----~~~~~k~v~viG~~----~ 102 (183)
+.|++ +|++|++.+.=-+-.......+.|.+.+|.+...+.++..... . ..+ ..+.+|++.+.|.+ +
T Consensus 226 ~~L~e---r~GiP~~~~~~~G~~~t~~~l~~la~~~g~~~~~e~~i~~~~~~~r~~l~~~~~~l~Gk~vai~~~~~~~~~ 302 (415)
T cd01977 226 NELKK---RYGIPRLDVDGFGFEYCAESLRKIGAFFGIEDRAEAVIAEEMAKWKPELDWYKERLKGKKVCIWTGGPKLWH 302 (415)
T ss_pred HHHHH---HhCCCeEEeccCCHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCchHHH
Confidence 56655 3458987654233334445567777778877654444433221 1 122 23578999888754 4
Q ss_pred HHHHHH-HCCCceee
Q psy17092 103 MEEIAK-RLGFNKVV 116 (183)
Q Consensus 103 ~~~~l~-~~G~~~~~ 116 (183)
+...+. ++|++.+.
T Consensus 303 la~~l~~elG~~v~~ 317 (415)
T cd01977 303 WTKVIEDELGMQVVA 317 (415)
T ss_pred HHHHHHHhcCCEEEE
Confidence 455564 89987653
No 263
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=38.36 E-value=1.2e+02 Score=20.24 Aligned_cols=55 Identities=16% Similarity=0.287 Sum_probs=32.4
Q ss_pred ceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 6 SFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
.+.+++|+.++=+-+...+.--.++. +.+++.| .. +.+++-+ .++.+.|. .+|+.
T Consensus 38 ~~~viid~~~v~~iDs~g~~~L~~l~-~~~~~~g----~~-v~i~~~~----~~~~~~l~-~~gl~ 92 (99)
T cd07043 38 PRRLVLDLSGVTFIDSSGLGVLLGAY-KRARAAG----GR-LVLVNVS----PAVRRVLE-LTGLD 92 (99)
T ss_pred CCEEEEECCCCCEEcchhHHHHHHHH-HHHHHcC----Ce-EEEEcCC----HHHHHHHH-HhCcc
Confidence 47788999998777766444444444 6666655 34 4444422 23445555 57765
No 264
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=38.22 E-value=32 Score=34.24 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=35.8
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|.+--.+++-|++.++| +.|++.| ++++++|.....+. ..+.+.+|+.
T Consensus 530 Gl~~~~Dplr~~v~e~I-~~l~~aG----I~v~miTGD~~~tA----~~ia~~~gi~ 577 (917)
T TIGR01116 530 GVVGMLDPPRPEVADAI-EKCRTAG----IRVIMITGDNKETA----EAICRRIGIF 577 (917)
T ss_pred EEeeeeCCCchhHHHHH-HHHHHCC----CEEEEecCCCHHHH----HHHHHHcCCC
Confidence 44555678999999999 9999988 99999996544443 3444567774
No 265
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=38.02 E-value=20 Score=30.33 Aligned_cols=80 Identities=28% Similarity=0.388 Sum_probs=44.9
Q ss_pred EEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHH-HHHHH
Q psy17092 10 IFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTP-IKMLH 88 (183)
Q Consensus 10 ifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a-~~~l~ 88 (183)
.|-+|||++...+.-+-...++ +. ..|.-+.+|++.++| ...++.+.+. ..|+.+ +-++... ..+..
T Consensus 132 a~Gv~~Vi~~~~~~~~~~~~v~-r~--s~Ga~~~vp~~~~~n----~~~~~~~~~~-~~G~~v----~~t~~~~~~~~~~ 199 (260)
T COG0566 132 AFGVDGVILPKRRADPLNPKVI-RA--SAGAAFHVPVIRVTN----LARTLLELLK-EAGFWV----VATSLDGEVDLYE 199 (260)
T ss_pred HhCCCEEEECCCccCCccceeE-Ee--cCChheeceeEEEec----cHHHHHHHHH-HcCeEE----EEECCCCCcchhh
Confidence 4667888886654332222212 11 124344589999998 4445555554 588873 2222222 22332
Q ss_pred -hcCCCeEEEEcCh
Q psy17092 89 -KYHTKHTLISGQG 101 (183)
Q Consensus 89 -~~~~k~v~viG~~ 101 (183)
.+.++.++++|++
T Consensus 200 ~~~~~~~aLvlG~E 213 (260)
T COG0566 200 TDLPKKTALVLGNE 213 (260)
T ss_pred ccccCCEEEEECCC
Confidence 3568899999975
No 266
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=37.77 E-value=84 Score=29.13 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=44.3
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHh---CCCCCccceeccHH----HHHHH------HhcCCCeEEEEc
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWL---GVEVEEDQVVMSHT----PIKML------HKYHTKHTLISG 99 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~l---G~~~~~~~I~ts~~----a~~~l------~~~~~k~v~viG 99 (183)
+.|++ +|++|++..+=-+-.........|.+.+ |++...+.++.... ...++ ..+.+|++++.|
T Consensus 226 ~~Le~---~fGiP~i~~~PiG~~~T~~fL~~l~~~~~~~g~~~~~e~~i~~e~~~~~~~~~~~r~~d~~~l~Gkrv~I~g 302 (511)
T TIGR01278 226 EYLKE---KFGQPYITTTPIGVNATRRFIREIAALLNQAGADPYYESFILDGLSAVSQAAWFARSIDSQSLTGKRAFVFG 302 (511)
T ss_pred HHHHH---HhCCCcccccccCHHHHHHHHHHHHHHHhhcCCCCcHHHHHHhhhhhhhhHHHHHhhhhhHHhcCCeEEEEc
Confidence 55554 3558875321112233444566677666 77754344432211 11122 124689999999
Q ss_pred Ch----hHHHHHH-HCCCceee
Q psy17092 100 QG----PMEEIAK-RLGFNKVV 116 (183)
Q Consensus 100 ~~----~~~~~l~-~~G~~~~~ 116 (183)
.+ ++...+. ++|++.+.
T Consensus 303 d~~~a~~l~~~L~~ElG~~vv~ 324 (511)
T TIGR01278 303 DATHAVGMTKILARELGIHIVG 324 (511)
T ss_pred CcHHHHHHHHHHHHhCCCEEEe
Confidence 75 4455565 89998764
No 267
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.61 E-value=1.8e+02 Score=23.18 Aligned_cols=21 Identities=0% Similarity=-0.140 Sum_probs=12.4
Q ss_pred hhccc-cccCCCCCCCCccccc
Q psy17092 154 ELKIT-DRSLDHKAKIGRSEAT 174 (183)
Q Consensus 154 ~l~~~-~~~l~~~~~~~~~~~~ 174 (183)
..++. ..+++-=|.++.+.+.
T Consensus 196 ~~g~~~p~di~iig~d~~~~~~ 217 (265)
T cd06285 196 DRGLRVPDDVALVGYNDIPLVA 217 (265)
T ss_pred HcCCCCCcceEEEeecCcHHHh
Confidence 44554 4567777777766543
No 268
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=37.17 E-value=69 Score=28.86 Aligned_cols=82 Identities=13% Similarity=0.228 Sum_probs=46.8
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCC--ccceeccHH--HHHHH----HhcCCCeEEEEcCh---
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVE--EDQVVMSHT--PIKML----HKYHTKHTLISGQG--- 101 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~--~~~I~ts~~--a~~~l----~~~~~k~v~viG~~--- 101 (183)
+.|++ +|++|++.+.=-+-.......+.+.+.+|.++. .+.++.... ....+ ..+.+|++++.|.+
T Consensus 236 ~~Le~---~fGiP~~~~~p~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~ 312 (421)
T cd01976 236 RMMEE---KYGIPWMEYNFFGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLRP 312 (421)
T ss_pred HHHHH---HhCCcEEecccCCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCCcH
Confidence 55554 356998766422333445556667777787642 223333321 11122 34578999888732
Q ss_pred -hHHHHHHHCCCceeeC
Q psy17092 102 -PMEEIAKRLGFNKVVT 117 (183)
Q Consensus 102 -~~~~~l~~~G~~~~~t 117 (183)
.+...++++|++.+.+
T Consensus 313 ~~~~~~l~elGmevv~~ 329 (421)
T cd01976 313 RHYIGAYEDLGMEVVGT 329 (421)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 4456678999987754
No 269
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=36.47 E-value=1.8e+02 Score=22.97 Aligned_cols=16 Identities=6% Similarity=0.056 Sum_probs=8.7
Q ss_pred HHHHHhcCCCeEEEEc
Q psy17092 84 IKMLHKYHTKHTLISG 99 (183)
Q Consensus 84 ~~~l~~~~~k~v~viG 99 (183)
+.++.+...+++.+++
T Consensus 110 ~~~l~~~g~~~i~~i~ 125 (270)
T cd01545 110 TRHLIDLGHRRIAFIA 125 (270)
T ss_pred HHHHHHCCCceEEEEe
Confidence 3444444556776664
No 270
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=36.39 E-value=78 Score=28.37 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=46.2
Q ss_pred HHHHhcCCCccccEEEEeC-CCCCCHHHHHHHHHHHhCCCCCccceecc-HHHHHHH----HhcCCCeEEEEcCh----h
Q psy17092 33 NKLTNSGGRFVVPTVFVTN-AGNSLAADKAKQLTEWLGVEVEEDQVVMS-HTPIKML----HKYHTKHTLISGQG----P 102 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTN-ns~~~~~~~~~~L~~~lG~~~~~~~I~ts-~~a~~~l----~~~~~k~v~viG~~----~ 102 (183)
+.|++ ++++|++.+.- -+-.........+.+.+|.+. +.+... +.....+ ..+.+|++.+.|.+ +
T Consensus 214 ~~Le~---~~GiP~~~~~~PiGi~~T~~~l~~la~~~g~~~--~~~~~e~~~~~~~l~~~~~~l~Gkrv~i~gd~~~~~~ 288 (407)
T TIGR01279 214 TTLRR---ERGAKVLSAPFPFGPDGTRRFLEAIAAEFGIEV--DKLSEREAQAWRALEPHTQLLRGKKIFFFGDNLLELP 288 (407)
T ss_pred HHHHH---HhCCccccCCCCcCHHHHHHHHHHHHHHhCcCH--HHHHHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHH
Confidence 56654 34589766543 344455566777887788762 222111 1111112 23578999999975 4
Q ss_pred HHHHHHHCCCceee
Q psy17092 103 MEEIAKRLGFNKVV 116 (183)
Q Consensus 103 ~~~~l~~~G~~~~~ 116 (183)
+...+.++|+..+.
T Consensus 289 l~~~L~elGm~~v~ 302 (407)
T TIGR01279 289 LARFLKRCGMEVVE 302 (407)
T ss_pred HHHHHHHCCCEEEE
Confidence 46667789987653
No 271
>PRK11187 replication initiation regulator SeqA; Provisional
Probab=35.94 E-value=44 Score=27.14 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=21.2
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHhCCCC
Q psy17092 44 VPTVFVTNAGNSLAADKAKQLTEWLGVEV 72 (183)
Q Consensus 44 i~~~~lTNns~~~~~~~~~~L~~~lG~~~ 72 (183)
-||+++|||.+-....+++++...||++.
T Consensus 144 TpfWViTNtNT~RKr~ml~~vm~~mg~p~ 172 (182)
T PRK11187 144 TPFWVITNTNTGRKRSMLEHVMQSMGFPA 172 (182)
T ss_pred CCeeEEeCCCcHHHHHHHHHHHHHcCCCH
Confidence 46999999866555556666666899983
No 272
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=35.57 E-value=1e+02 Score=27.74 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=45.9
Q ss_pred HHHHhcCCCccccEEEEeC-CCCCCHHHHHHHHHHHhCCCCC-ccceeccH--HHHHHH----HhcCCCeEEEEcChh--
Q psy17092 33 NKLTNSGGRFVVPTVFVTN-AGNSLAADKAKQLTEWLGVEVE-EDQVVMSH--TPIKML----HKYHTKHTLISGQGP-- 102 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTN-ns~~~~~~~~~~L~~~lG~~~~-~~~I~ts~--~a~~~l----~~~~~k~v~viG~~~-- 102 (183)
+.|++.| +|++.+.. -+-.......+.+.+.+|.+.. .++.+... .....+ ....+|++++.|.+.
T Consensus 227 ~~L~~~G----iP~~~~~~P~G~~~T~~~L~~la~~~g~~~~~~~~~~~~er~~~~~~l~~~~~~l~Gkrvai~g~~~~~ 302 (427)
T PRK02842 227 RALRERG----AKVLTAPFPLGPEGTRAWLEAAAAAFGIDPDGLEEREAPAWERARKALEPYRELLRGKRVFFLPDSQLE 302 (427)
T ss_pred HHHHHcC----CccccCCCCcChHHHHHHHHHHHHHhCcCHhHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCchhH
Confidence 6664444 88766654 3444555567778877887643 11222211 111112 234789999999764
Q ss_pred --HHHHHHH-CCCcee
Q psy17092 103 --MEEIAKR-LGFNKV 115 (183)
Q Consensus 103 --~~~~l~~-~G~~~~ 115 (183)
+...+.+ +|+..+
T Consensus 303 ~~la~~L~eelGm~~v 318 (427)
T PRK02842 303 IPLARFLSRECGMELV 318 (427)
T ss_pred HHHHHHHHHhCCCEEE
Confidence 5666766 998865
No 273
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=35.36 E-value=44 Score=30.57 Aligned_cols=75 Identities=17% Similarity=0.313 Sum_probs=48.4
Q ss_pred CCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHHHHH--hcC
Q psy17092 14 DGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIKMLH--KYH 91 (183)
Q Consensus 14 DGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~~l~--~~~ 91 (183)
=|.+...+++-|++.+++ ++|++.| +.++++|-....+ +..+.+.+|+.. + .++..=+.+++ +..
T Consensus 339 ~g~i~l~d~lr~~~~~~i-~~l~~~g----i~~~~ltGD~~~~----a~~ia~~lgi~~---~-~~p~~K~~~v~~l~~~ 405 (499)
T TIGR01494 339 LGLLGLEDPLRDDAKETI-SELREAG----IRVIMLTGDNVLT----AKAIAKELGIFA---R-VTPEEKAALVEALQKK 405 (499)
T ss_pred EEEEEecCCCchhHHHHH-HHHHHCC----CeEEEEcCCCHHH----HHHHHHHcCcee---c-cCHHHHHHHHHHHHHC
Confidence 356667889999999999 9999877 7888898644433 445556677621 1 22222222332 234
Q ss_pred CCeEEEEcCh
Q psy17092 92 TKHTLISGQG 101 (183)
Q Consensus 92 ~k~v~viG~~ 101 (183)
+..+..+|.+
T Consensus 406 g~~v~~vGDg 415 (499)
T TIGR01494 406 GRVVAMTGDG 415 (499)
T ss_pred CCEEEEECCC
Confidence 5789999976
No 274
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.92 E-value=1.3e+02 Score=25.88 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=39.2
Q ss_pred CceEEEEecC-----------CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCC
Q psy17092 5 PSFGLIFDID-----------GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGV 70 (183)
Q Consensus 5 ~~~~iifDiD-----------GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~ 70 (183)
+.++|.+|+| |+.--..+.+|.-.+.+ +.|+++| +++++..+-.-.......+.+. ..|.
T Consensus 39 P~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi-~~L~~~G----~k~~~~v~P~v~~~~~~y~e~~-~~g~ 109 (317)
T cd06598 39 PLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMI-ADLAKKG----VKTIVITEPFVLKNSKNWGEAV-KAGA 109 (317)
T ss_pred CceEEEEechhhcCcccCCceeeeEeccccCCCHHHHH-HHHHHcC----CcEEEEEcCcccCCchhHHHHH-hCCC
Confidence 4688999976 34444467789999988 9999988 7776666543222223345555 3665
No 275
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=34.75 E-value=1.9e+02 Score=21.83 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=48.9
Q ss_pred EEEecCCeeeeC----CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHH-HhCCCCCccceeccH--
Q psy17092 9 LIFDIDGVLVRG----KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTE-WLGVEVEEDQVVMSH-- 81 (183)
Q Consensus 9 iifDiDGVL~~g----~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~-~lG~~~~~~~I~ts~-- 81 (183)
++.|+-.=+..+ ...++.....+ +..++.| +|++++....+... ++...|.. .-+-.+-...-+++-
T Consensus 3 lvID~Q~~f~~~~~~~~~~~~~i~~l~-~~ar~~g----~pVi~~~~~~~~~g-~~~~~l~~~~~~~~vi~K~~~saf~~ 76 (157)
T cd01012 3 LLVDVQEKLAPAIKSFDELINNTVKLA-KAAKLLD----VPVILTEQYPKGLG-PTVPELREVFPDAPVIEKTSFSCWED 76 (157)
T ss_pred EEEeCcHHHHHhhcCHHHHHHHHHHHH-HHHHhcC----CCEEEEeeCCCCCC-CchHHHHhhCCCCCceecccccCcCC
Confidence 455554433322 22344444444 6666666 89999887653222 34455542 011111111112221
Q ss_pred HHHH-HHHhcCCCeEEEEcC--hhHH----HHHHHCCCceee
Q psy17092 82 TPIK-MLHKYHTKHTLISGQ--GPME----EIAKRLGFNKVV 116 (183)
Q Consensus 82 ~a~~-~l~~~~~k~v~viG~--~~~~----~~l~~~G~~~~~ 116 (183)
+... +|+..+-+.+++.|- ..+. ..+...||+..+
T Consensus 77 t~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v 118 (157)
T cd01012 77 EAFRKALKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFV 118 (157)
T ss_pred HHHHHHHHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEE
Confidence 2233 566555578888884 3332 223467887654
No 276
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=34.38 E-value=1.6e+02 Score=26.35 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=38.7
Q ss_pred ccccEEEEe-CCCCCCHHHHHHHHHHHhCCCCCccceeccHH-HHH----HHHhcCCCeEEEEcCh----hHHHHHHHCC
Q psy17092 42 FVVPTVFVT-NAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT-PIK----MLHKYHTKHTLISGQG----PMEEIAKRLG 111 (183)
Q Consensus 42 ~~i~~~~lT-Nns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-a~~----~l~~~~~k~v~viG~~----~~~~~l~~~G 111 (183)
+++|++.+. =.+-.......+.|.+.+|.+. ++.+..... ... ......++++.+.|.+ ++...|.++|
T Consensus 244 ~GiP~~~~~~p~G~~~t~~~l~~l~~~~g~~~-~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~~~~~l~~~L~e~G 322 (428)
T cd01965 244 FGVPYILFPTPIGLKATDEFLRALSKLSGKPI-PEELERERGRLLDAMLDSHFYLGGKRVAIAGDPDLLLGLSRFLLEMG 322 (428)
T ss_pred HCCCeeecCCCcChHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChHHHHHHHHHHHHcC
Confidence 447766543 1233333444556666677654 222221111 111 1123578999999875 4566678899
Q ss_pred Ccee
Q psy17092 112 FNKV 115 (183)
Q Consensus 112 ~~~~ 115 (183)
+...
T Consensus 323 ~~v~ 326 (428)
T cd01965 323 AEPV 326 (428)
T ss_pred Ccce
Confidence 8654
No 277
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=34.33 E-value=1.1e+02 Score=28.39 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=45.2
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCc-cceeccHHHH--H--HH------HhcCCCeEEEEcCh
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEE-DQVVMSHTPI--K--ML------HKYHTKHTLISGQG 101 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~-~~I~ts~~a~--~--~l------~~~~~k~v~viG~~ 101 (183)
+.|++ +|++|++..+=-+-.........+.+.+|++... +.++...... + ++ ..+.+|++++.|.+
T Consensus 226 ~~Lee---~fGiP~i~~~PiG~~~T~~fL~~la~~~g~~~~~~e~~i~~~~~~~~~l~~~~~~~d~~~l~Gkrv~I~gd~ 302 (519)
T PRK02910 226 RYLER---EFGQPYVKTVPIGVGATARFIREVAELLNLDGADLEAFILDGLSAPSRLPWFSRSVDSTYLTGKRVFVFGDA 302 (519)
T ss_pred HHHHH---HhCCcccccccccHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhhhhhhHHHHhhhhHhhcCCEEEEEcCc
Confidence 55554 3558875432223334455667778778876542 2222222111 0 12 23578999999975
Q ss_pred ----hHHHHHH-HCCCceee
Q psy17092 102 ----PMEEIAK-RLGFNKVV 116 (183)
Q Consensus 102 ----~~~~~l~-~~G~~~~~ 116 (183)
++...+. ++|++.+.
T Consensus 303 ~~a~~l~~~L~~ElGm~vv~ 322 (519)
T PRK02910 303 THAVAAARILSDELGFEVVG 322 (519)
T ss_pred HHHHHHHHHHHHhcCCeEEE
Confidence 5555565 79987653
No 278
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=34.03 E-value=1.3e+02 Score=27.27 Aligned_cols=81 Identities=19% Similarity=0.331 Sum_probs=44.1
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHH--HHHH----HhcCCCeEEEEcCh----h
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTP--IKML----HKYHTKHTLISGQG----P 102 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a--~~~l----~~~~~k~v~viG~~----~ 102 (183)
+.|++ +|++|++.+.=-+-.........|.+.+|++...+.++..... ...+ ..+.+++|.+.+.+ .
T Consensus 255 ~~L~e---r~GiP~~~~~p~G~~~t~~~l~~la~~~gi~~~~e~~i~~~~~~~~~~l~~~~~~l~gkrvai~~~~~~~~~ 331 (443)
T TIGR01862 255 NELEE---RYGIPWMKIDFFGFTYTAESLRAIAAFFGIEKRAEEVIAEEKAKWKPELDYYKERLQGKRVCLYIGGSRLWH 331 (443)
T ss_pred HHHHH---HhCCCeEecccCCHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCchhHHH
Confidence 55654 3558977654223333444566677777866443334333221 1122 23578888886543 3
Q ss_pred HHH-HHHHCCCceee
Q psy17092 103 MEE-IAKRLGFNKVV 116 (183)
Q Consensus 103 ~~~-~l~~~G~~~~~ 116 (183)
+.. .+.++|++...
T Consensus 332 ~~~~ll~elGm~v~~ 346 (443)
T TIGR01862 332 WIGSAEEDLGMEVVA 346 (443)
T ss_pred HHHHHHHHCCCEEEE
Confidence 333 56789998754
No 279
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=33.79 E-value=1.9e+02 Score=21.29 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=35.3
Q ss_pred eeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC-HHHHHHHHHHHhCCC
Q psy17092 18 VRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL-AADKAKQLTEWLGVE 71 (183)
Q Consensus 18 ~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~-~~~~~~~L~~~lG~~ 71 (183)
.+++...-|..+++ +.+++. + ..++++.++.+.. .......+.+..+++
T Consensus 22 ~ragkl~~G~~~v~-kaikkg--k--a~LVilA~D~s~~~~~~~i~~lc~~~~Ip 71 (117)
T TIGR03677 22 RETGKIKKGTNEVT-KAVERG--I--AKLVVIAEDVEPPEIVAHLPALCEEKGIP 71 (117)
T ss_pred HHcCCEeEcHHHHH-HHHHcC--C--ccEEEEeCCCCcHHHHHHHHHHHHHcCCC
Confidence 45667888999988 888853 2 7889999998763 334455666667777
No 280
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=33.76 E-value=1.1e+02 Score=23.68 Aligned_cols=48 Identities=29% Similarity=0.434 Sum_probs=30.5
Q ss_pred cCCeeeeCCccC--ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhC
Q psy17092 13 IDGVLVRGKQVL--PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLG 69 (183)
Q Consensus 13 iDGVL~~g~~~i--pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG 69 (183)
+.++.+.|+.|+ +...+.+ +.+++.| +.+.+.||.. .. +.++++.+ .|
T Consensus 63 ~~~i~~sGGEPll~~~l~~li-~~~~~~g----~~v~i~TNg~--~~-~~l~~l~~-~g 112 (191)
T TIGR02495 63 IDGVVITGGEPTLQAGLPDFL-RKVRELG----FEVKLDTNGS--NP-RVLEELLE-EG 112 (191)
T ss_pred CCeEEEECCcccCcHhHHHHH-HHHHHCC----CeEEEEeCCC--CH-HHHHHHHh-cC
Confidence 356666776664 4455666 8887765 6788889876 33 34555653 55
No 281
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=33.73 E-value=95 Score=21.69 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=31.7
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV 72 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~ 72 (183)
+.+-|..+++ +.+++ | + ...+|+.++.+.....-...+.+..++++
T Consensus 8 Klv~G~~~vl-kaIk~-g-k--akLViiA~Da~~~~~k~i~~~c~~~~Vpv 53 (82)
T PRK13601 8 KRVVGAKQTL-KAITN-C-N--VLQVYIAKDAEEHVTKKIKELCEEKSIKI 53 (82)
T ss_pred cEEEchHHHH-HHHHc-C-C--eeEEEEeCCCCHHHHHHHHHHHHhCCCCE
Confidence 4556777888 88875 3 3 67899988887655555555566677775
No 282
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=33.73 E-value=38 Score=28.99 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=34.3
Q ss_pred HHHHHHHhCCC-CCccceeccHHHHHHHHhcCCCeEEEEcChhHHHHHHH
Q psy17092 61 AKQLTEWLGVE-VEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKR 109 (183)
Q Consensus 61 ~~~L~~~lG~~-~~~~~I~ts~~a~~~l~~~~~k~v~viG~~~~~~~l~~ 109 (183)
++.|. .+|++ +++++++|+......+.+..=...||+|...+-+.++.
T Consensus 92 A~iLe-algVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRR 140 (296)
T COG0214 92 AQILE-ALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRR 140 (296)
T ss_pred HHHHH-HhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHH
Confidence 34455 79998 58899999887666554333367899998877777653
No 283
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=33.66 E-value=67 Score=22.34 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=34.6
Q ss_pred CceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 5 PSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
..+.+++|+.||=+-+...+---.+.. +.+++.| ..+ ++.|-+ ....+.|. ..|+.
T Consensus 38 ~~~~vilDls~v~~iDssgl~~L~~l~-~~~~~~g----~~l-~l~~~~----~~v~~~l~-~~gl~ 93 (100)
T cd06844 38 AGKTIVIDISALEFMDSSGTGVLLERS-RLAEAVG----GQF-VLTGIS----PAVRITLT-ESGLD 93 (100)
T ss_pred CCCEEEEECCCCcEEcHHHHHHHHHHH-HHHHHcC----CEE-EEECCC----HHHHHHHH-HhCch
Confidence 457899999999998777554444444 6777666 444 444422 22344554 57765
No 284
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=33.29 E-value=72 Score=26.21 Aligned_cols=53 Identities=28% Similarity=0.348 Sum_probs=28.1
Q ss_pred EecCCeeeeCC------ccCccHHHHHHHHHHhcCCCccccEEEEeCCC-CCCHHHHHHHHHHHhCCC
Q psy17092 11 FDIDGVLVRGK------QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAG-NSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 11 fDiDGVL~~g~------~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns-~~~~~~~~~~L~~~lG~~ 71 (183)
||.-|.+|.-. -|+|=+.+.. +.|++.|| +.++++||.- .|..++|+ +.+|..
T Consensus 21 ~dfng~~~~~p~GnilIDP~~ls~~~~-~~l~a~gg---v~~IvLTn~dHvR~A~~ya----~~~~a~ 80 (199)
T PF14597_consen 21 LDFNGHAWRRPEGNILIDPPPLSAHDW-KHLDALGG---VAWIVLTNRDHVRAAEDYA----EQTGAK 80 (199)
T ss_dssp EEEEEEEE--TT--EEES-----HHHH-HHHHHTT-----SEEE-SSGGG-TTHHHHH----HHS--E
T ss_pred cCceeEEEEcCCCCEEecCccccHHHH-HHHHhcCC---ceEEEEeCChhHhHHHHHH----HHhCCe
Confidence 57777777432 2567788888 99998885 7899999964 44544444 455554
No 285
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.24 E-value=1.6e+02 Score=26.47 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=42.5
Q ss_pred HHHHhcCCCccccEEEEe-CCCCCCHHHHHHHHHHHhCCCCCccceeccH-HHHHHH----HhcCCCeEEEEcCh----h
Q psy17092 33 NKLTNSGGRFVVPTVFVT-NAGNSLAADKAKQLTEWLGVEVEEDQVVMSH-TPIKML----HKYHTKHTLISGQG----P 102 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lT-Nns~~~~~~~~~~L~~~lG~~~~~~~I~ts~-~a~~~l----~~~~~k~v~viG~~----~ 102 (183)
+.|++ +|++|++.+. =.+-.......+.+.+.+|.++. +.+-... .....+ ....++++.+.|.+ +
T Consensus 242 ~~Le~---~~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~-~~i~~er~~~~~~~~~~~~~l~gkrv~i~g~~~~~~~ 317 (435)
T cd01974 242 KFLEK---KCKVPVETLNMPIGVAATDEFLMALSELTGKPIP-EELEEERGRLVDAMTDSHQYLHGKKFALYGDPDFLIG 317 (435)
T ss_pred HHHHH---HhCCCeeecCCCcChHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHhcCCCEEEEEcChHHHHH
Confidence 45554 2448866553 22333344455666667777642 1121111 111112 23478999998875 4
Q ss_pred HHHHHHHCCCcee
Q psy17092 103 MEEIAKRLGFNKV 115 (183)
Q Consensus 103 ~~~~l~~~G~~~~ 115 (183)
+.+.+.++|++..
T Consensus 318 la~~L~elGm~v~ 330 (435)
T cd01974 318 LTSFLLELGMEPV 330 (435)
T ss_pred HHHHHHHCCCEEE
Confidence 4566789998873
No 286
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=33.13 E-value=1.5e+02 Score=27.54 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=45.8
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCc--------cceeccHHH-H---HHHH------hcCCCe
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEE--------DQVVMSHTP-I---KMLH------KYHTKH 94 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~--------~~I~ts~~a-~---~~l~------~~~~k~ 94 (183)
+.|++ +|++|++...=-+-.........+.+.+|.+... +.++....- . .+++ .+.+|+
T Consensus 231 ~~Le~---~fgiP~i~~~PiGi~~T~~fLr~la~~lg~~~~~i~~~e~~~e~~i~~~~~~~~~~~~~~r~~d~~~l~Gkr 307 (513)
T CHL00076 231 KYLEK---EFGMPYISTTPMGIVDTAECIRQIQKILNKLASDILEKKVDYEKYIDQQTRFVSQAAWFSRSIDCQNLTGKK 307 (513)
T ss_pred HHHHH---HhCCCeEeeccCCHHHHHHHHHHHHHHhCCCcchhhhchhhHHHHHHHhhhhhhhhhHhhhhhhccccCCCE
Confidence 56654 3568986543223334455667777777876321 112211110 0 1121 347799
Q ss_pred EEEEcCh----hHHHHH-HHCCCceeeC
Q psy17092 95 TLISGQG----PMEEIA-KRLGFNKVVT 117 (183)
Q Consensus 95 v~viG~~----~~~~~l-~~~G~~~~~t 117 (183)
++++|.+ ++...| ++.|+..+++
T Consensus 308 v~I~gd~~~a~~l~~~L~~ELGm~vv~~ 335 (513)
T CHL00076 308 AVVFGDATHAASMTKILAREMGIRVSCA 335 (513)
T ss_pred EEEEcCchHHHHHHHHHHHhCCCEEEEe
Confidence 9999875 445555 6899998754
No 287
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=33.06 E-value=2.8e+02 Score=24.98 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=60.4
Q ss_pred ecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCC-------------CCHHHHHHHHHHHhCCCCCcccee
Q psy17092 12 DIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGN-------------SLAADKAKQLTEWLGVEVEEDQVV 78 (183)
Q Consensus 12 DiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~-------------~~~~~~~~~L~~~lG~~~~~~~I~ 78 (183)
|+||+++.-.+--++ ..++ +.++..+ +|++++.+... -...+...-|+ .+|++.. ++
T Consensus 63 ~~d~ii~~~~tf~~~-~~~~-~~~~~~~----~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~~~l~-r~gi~~~---~v 132 (452)
T cd00578 63 NCDGLIVWMHTFGPA-KMWI-AGLSELR----KPVLLLATQFNREIPDFMNLNQSACGLREFGNILA-RLGIPFK---VV 132 (452)
T ss_pred CCcEEEEcccccccH-HHHH-HHHHhcC----CCEEEEeCCCCCCCCchhhhhcchhhhHHHHHHHH-HcCCcee---EE
Confidence 799998865554443 2334 5565543 79988875542 23344566676 5888742 11
Q ss_pred ccH----H----------HHHHHHhcCCCeEEEEcCh--hH-------HHHHHHCCCce-eeCHHHHHhhcCCC
Q psy17092 79 MSH----T----------PIKMLHKYHTKHTLISGQG--PM-------EEIAKRLGFNK-VVTVDSIRNAHPLL 128 (183)
Q Consensus 79 ts~----~----------a~~~l~~~~~k~v~viG~~--~~-------~~~l~~~G~~~-~~t~~~l~~a~p~l 128 (183)
... . +++.++..++.++..+|.. ++ .+..+..|++. .+...++.+....+
T Consensus 133 ~g~~~d~~~~~~i~~~~raa~~~~~lr~~rig~iG~~~~~~~~~~~d~~~~~~~fG~~v~~i~~~el~~~~~~v 206 (452)
T cd00578 133 YGHWKDEDVLRKIESWARAAAAVATLRGLRVGRFGDRMRGMAVTEGDKVLAQIKFGVSVEYLEVGELVRRIDEV 206 (452)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHhhcCceEEECCCcCCcEEecCCHHHHHHhhCeEEEEEcHHHHHHHHHhC
Confidence 111 1 1123345577889999853 22 24456788766 45666665544333
No 288
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.87 E-value=2.5e+02 Score=22.48 Aligned_cols=18 Identities=11% Similarity=-0.092 Sum_probs=9.7
Q ss_pred hhccccccCCCCCCCCccc
Q psy17092 154 ELKITDRSLDHKAKIGRSE 172 (183)
Q Consensus 154 ~l~~~~~~l~~~~~~~~~~ 172 (183)
+.++. .++..=|.+|.|.
T Consensus 206 ~~g~~-~~~~ivg~d~~~~ 223 (274)
T cd06311 206 QAGRT-DIKFVVGGAGSKD 223 (274)
T ss_pred HcCCC-CCceEEEeCCCHH
Confidence 45555 3555556666544
No 289
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=32.69 E-value=90 Score=27.44 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=28.2
Q ss_pred CCCeEEEEcChhHHHHHHHCC-CceeeCHHHHHhhcC
Q psy17092 91 HTKHTLISGQGPMEEIAKRLG-FNKVVTVDSIRNAHP 126 (183)
Q Consensus 91 ~~k~v~viG~~~~~~~l~~~G-~~~~~t~~~l~~a~p 126 (183)
...++.-+.+..-.+..+..| |+.+++|+++....+
T Consensus 161 ~~~~~vglTS~~N~~Fve~lg~Yd~V~~Yd~i~~l~~ 197 (314)
T PF11017_consen 161 GPPKVVGLTSARNVAFVESLGCYDEVLTYDDIDSLDA 197 (314)
T ss_pred CCceEEEEecCcchhhhhccCCceEEeehhhhhhccC
Confidence 445666677777777778888 799999999988855
No 290
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=32.67 E-value=2e+02 Score=24.75 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=39.8
Q ss_pred EEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeC-CCCCCHHHHHHHHHHHhCCCCCccceeccHHHHHHH
Q psy17092 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN-AGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIKML 87 (183)
Q Consensus 9 iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTN-ns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~~l 87 (183)
+|-|-|.+|.+++. .-+..+| ..+.+.|++ +.+ +++- .....-..+++.|. ..|+++ .+++...+..++
T Consensus 106 ~I~~g~~ILTh~~S--~tv~~~l-~~A~~~gk~--~~V-~v~EsrP~~qG~~la~eL~-~~GI~v---tlI~Dsa~~~~m 175 (275)
T PRK08335 106 LIDDGDVIITHSFS--SAVLEIL-KTAKRKGKR--FKV-ILTESAPDYEGLALANELE-FLGIEF---EVITDAQLGLFA 175 (275)
T ss_pred HcCCCCEEEEECCc--HHHHHHH-HHHHHcCCc--eEE-EEecCCCchhHHHHHHHHH-HCCCCE---EEEeccHHHHHH
Confidence 34466667777766 2244555 777766632 344 4443 23333345688888 589986 355545444444
Q ss_pred Hh
Q psy17092 88 HK 89 (183)
Q Consensus 88 ~~ 89 (183)
++
T Consensus 176 ~~ 177 (275)
T PRK08335 176 KE 177 (275)
T ss_pred Hh
Confidence 43
No 291
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=32.18 E-value=1.1e+02 Score=25.01 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=29.6
Q ss_pred ecCCeeeeCCccCccH---HHHHHHHHHhcCCCccccEEEEeCCCCC
Q psy17092 12 DIDGVLVRGKQVLPGV---QDTFMNKLTNSGGRFVVPTVFVTNAGNS 55 (183)
Q Consensus 12 DiDGVL~~g~~~ipgA---~e~l~~~l~~~ggk~~i~~~~lTNns~~ 55 (183)
...||-+.|+.|+... .+++ +.+++.| +.+.+.||+...
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~-~~~k~~g----i~~~leTnG~~~ 79 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFL-QRLRLWG----VSCAIETAGDAP 79 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHH-HHHHHcC----CCEEEECCCCCC
Confidence 3479999999886553 4656 7887776 999999997643
No 292
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=31.99 E-value=1.3e+02 Score=21.60 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=32.9
Q ss_pred ceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 6 SFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
.+.+++|+.||=+-+...+---..++ +.++..| ..+ ++++.+ + ++++.+. ..|++
T Consensus 44 ~~~ivIDls~v~~~dS~gl~~L~~~~-~~~~~~g----~~~-~l~~i~---p-~v~~~~~-~~gl~ 98 (117)
T COG1366 44 ARGLVIDLSGVDFMDSAGLGVLVALL-KSARLRG----VEL-VLVGIQ---P-EVARTLE-LTGLD 98 (117)
T ss_pred CcEEEEECCCCceechHHHHHHHHHH-HHHHhcC----CeE-EEEeCC---H-HHHHHHH-HhCch
Confidence 45599999999998776333333334 6666666 344 444322 2 2445555 68887
No 293
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=31.19 E-value=1.5e+02 Score=25.56 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=42.2
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHHHHHhcCCCeEEEEcCh
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQG 101 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~~l~~~~~k~v~viG~~ 101 (183)
+.+||..+++ +++++.. .-+++++......+.. +++...+.+..+.+..........++..-+....+..+
T Consensus 70 q~vpGt~~af-~kIkekR----pDIl~ia~~~~EDp~~----i~~~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfp 140 (275)
T PF12683_consen 70 QAVPGTAEAF-RKIKEKR----PDILLIAGEPHEDPEV----ISSAADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFP 140 (275)
T ss_dssp -SS---HHHH-HHHHHH-----TTSEEEESS--S-HHH----HHHHSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEET
T ss_pred CCCcchHHHH-HHHHhcC----CCeEEEcCCCcCCHHH----HhhccCeEeccchhhccHHHHHHHHHcCCceEEEEech
Confidence 5689999999 9999864 4588888776666544 44556666665554433333333344444555445321
Q ss_pred -------------hHHHHHHHCCCcee
Q psy17092 102 -------------PMEEIAKRLGFNKV 115 (183)
Q Consensus 102 -------------~~~~~l~~~G~~~~ 115 (183)
.+++.+++.|+..+
T Consensus 141 rhms~~~l~~Rr~~M~~~C~~lGi~fv 167 (275)
T PF12683_consen 141 RHMSYELLARRRDIMEEACKDLGIKFV 167 (275)
T ss_dssp TGGGSHHHHHHHHHHHHHHHHCT--EE
T ss_pred hhcchHHHHHHHHHHHHHHHHcCCeEE
Confidence 33455667887654
No 294
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=31.18 E-value=2.2e+02 Score=21.18 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=36.1
Q ss_pred eeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCC-HHHHHHHHHHHhCCCC
Q psy17092 18 VRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL-AADKAKQLTEWLGVEV 72 (183)
Q Consensus 18 ~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~-~~~~~~~L~~~lG~~~ 72 (183)
.++++.+-|..+++ +.+++.. ..++++.++.+.. .......+.+..|++.
T Consensus 26 ~ragklv~G~~~v~-kaikkgk----akLVilA~D~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 26 RDTGKIKKGTNETT-KAVERGI----AKLVVIAEDVDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred HHcCCEeEcHHHHH-HHHHcCC----ccEEEEeCCCChHHHHHHHHHHHHHcCCCE
Confidence 35667888999998 8888632 6889999988663 2344566666778874
No 295
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.88 E-value=1.6e+02 Score=23.46 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=9.1
Q ss_pred HHHHHhcCCCeEEEEcC
Q psy17092 84 IKMLHKYHTKHTLISGQ 100 (183)
Q Consensus 84 ~~~l~~~~~k~v~viG~ 100 (183)
+.++.+...+++.+++.
T Consensus 110 ~~~l~~~g~~~i~~i~~ 126 (268)
T cd06277 110 TEYLIEKGHRKIGFVGD 126 (268)
T ss_pred HHHHHHCCCCcEEEECC
Confidence 34444444566766653
No 296
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=30.83 E-value=65 Score=26.65 Aligned_cols=39 Identities=10% Similarity=-0.046 Sum_probs=28.5
Q ss_pred cCCeeeeCCccC--ccHHHHHHHHHHhcCCCccccEEEEeCCCCCC
Q psy17092 13 IDGVLVRGKQVL--PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL 56 (183)
Q Consensus 13 iDGVL~~g~~~i--pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~ 56 (183)
..+|.+.|++|+ +.-.+.+ +++++.| +++.+.||++-..
T Consensus 73 ~~~V~lTGGEPll~~~l~~li-~~l~~~g----~~v~leTNGtl~~ 113 (238)
T TIGR03365 73 PLHVSLSGGNPALQKPLGELI-DLGKAKG----YRFALETQGSVWQ 113 (238)
T ss_pred CCeEEEeCCchhhhHhHHHHH-HHHHHCC----CCEEEECCCCCcH
Confidence 456777887774 4466766 8888776 8899999977543
No 297
>PRK06683 hypothetical protein; Provisional
Probab=30.58 E-value=97 Score=21.52 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=34.0
Q ss_pred eCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC
Q psy17092 19 RGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV 72 (183)
Q Consensus 19 ~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~ 72 (183)
+..+.+-|..+++ +.+++ | + ...+|+..+.+....+-...+.+..++++
T Consensus 8 ~agk~v~G~~~v~-kaik~-g-k--aklViiA~Da~~~~~~~i~~~~~~~~Vpv 56 (82)
T PRK06683 8 NAENVVVGHKRTL-EAIKN-G-I--VKEVVIAEDADMRLTHVIIRTALQHNIPI 56 (82)
T ss_pred hCCCEEEcHHHHH-HHHHc-C-C--eeEEEEECCCCHHHHHHHHHHHHhcCCCE
Confidence 5566788899988 88875 3 3 67788888776655544555555677775
No 298
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=30.57 E-value=2.7e+02 Score=23.09 Aligned_cols=20 Identities=15% Similarity=-0.057 Sum_probs=10.7
Q ss_pred hhccccccCCCCCCCCcccc
Q psy17092 154 ELKITDRSLDHKAKIGRSEA 173 (183)
Q Consensus 154 ~l~~~~~~l~~~~~~~~~~~ 173 (183)
+++--.+|++-=|.++.+.+
T Consensus 259 ~~g~vP~dvsvigfd~~~~~ 278 (327)
T TIGR02417 259 ERPLLDSQLHLATFGDNYLL 278 (327)
T ss_pred HcCCCCCcceEEEECCchHH
Confidence 45523346776666665443
No 299
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=30.51 E-value=2.9e+02 Score=22.22 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=38.0
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHhCCCCC--ccceeccHHHHHHHHhcCCCeEEEEcChhHHHHHHHCCC
Q psy17092 45 PTVFVTNAGNSLAADKAKQLTEWLGVEVE--EDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGF 112 (183)
Q Consensus 45 ~~~~lTNns~~~~~~~~~~L~~~lG~~~~--~~~I~ts~~a~~~l~~~~~k~v~viG~~~~~~~l~~~G~ 112 (183)
|.+++|.+.. ..++.+.|. ..|+.+- .++-+........|.+...+.+++.|.+.+...+-..|+
T Consensus 91 ~~~v~t~~~~--~~~~~~~l~-~~gv~vi~~~~~~~dl~~~l~~L~~~g~~~vlveGG~~l~~~fl~~~L 157 (210)
T TIGR01508 91 KTIIATSEDE--PEEKVEELE-DKGVEVVKFGEGRVDLKKLLDILYDKGVRRLMVEGGGTLIWSLFKENL 157 (210)
T ss_pred CEEEEEcCCC--CHHHHHHHH-HCCCEEEEeCCCCcCHHHHHHHHHHCCCCEEEEeeCHHHHHHHHHCCC
Confidence 5666664321 223456676 4676531 111111223344556667789999999989888877774
No 300
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=30.37 E-value=97 Score=28.37 Aligned_cols=81 Identities=21% Similarity=0.363 Sum_probs=45.3
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHH-H-HHH----HhcCCCeEEEEcCh----h
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTP-I-KML----HKYHTKHTLISGQG----P 102 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a-~-~~l----~~~~~k~v~viG~~----~ 102 (183)
+.|++ +|++|++.+.=-+-.........+.+.+|++...+.++..... . ..+ ..+.+|++++.+.+ .
T Consensus 265 ~~Lee---r~GiP~~~~~p~Gi~~T~~~L~~la~~~g~~~~~e~~I~~e~~~~~~~Ld~~~~~L~GkrvaI~~~~~~~~~ 341 (461)
T TIGR01860 265 NELKK---RYGIPRLDVDTWGFNYMAEALRKIGAFFGIEDKAEEVIAEEYAKYKPKLDWYKERLQGKKMCIWTGGPRLWH 341 (461)
T ss_pred HHHHH---HhCCCeecCCcCCHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCchHHH
Confidence 55554 3568887654233334445566677777876443444433221 1 122 23578999887654 3
Q ss_pred HHHHHH-HCCCceee
Q psy17092 103 MEEIAK-RLGFNKVV 116 (183)
Q Consensus 103 ~~~~l~-~~G~~~~~ 116 (183)
+...+. ++|++.+.
T Consensus 342 ~~~~l~~ElGmevv~ 356 (461)
T TIGR01860 342 WTKALEDDLGMQVVA 356 (461)
T ss_pred HHHHHHHhCCCEEEE
Confidence 345555 79988654
No 301
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.34 E-value=86 Score=22.46 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=23.6
Q ss_pred CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHH
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKA 61 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~ 61 (183)
-+...+++ +.++++| .|++.+|++...+-..++
T Consensus 60 t~~~~~~~-~~a~~~g----~~vi~iT~~~~s~la~~a 92 (128)
T cd05014 60 TDELLNLL-PHLKRRG----APIIAITGNPNSTLAKLS 92 (128)
T ss_pred CHHHHHHH-HHHHHCC----CeEEEEeCCCCCchhhhC
Confidence 34566666 8888776 899999998777654433
No 302
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=30.21 E-value=2.7e+02 Score=22.31 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=37.4
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHhCCCCCc--cceeccHHHHHHHHhcCCCeEEEEcChhHHHHHHHCCC
Q psy17092 44 VPTVFVTNAGNSLAADKAKQLTEWLGVEVEE--DQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGF 112 (183)
Q Consensus 44 i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~--~~I~ts~~a~~~l~~~~~k~v~viG~~~~~~~l~~~G~ 112 (183)
.+.+++|... ...++.+.|. ..|+.+-. +.-+........|++...+.+++.|.+.+...+-+.|+
T Consensus 94 ~~~~v~t~~~--~~~~~~~~l~-~~~~~v~~~~~~~~dl~~~l~~L~~~g~~~vlveGG~~l~~~fl~~~L 161 (217)
T PRK05625 94 AKTIVAVSEA--APSEKVEELE-KKGAEVIVAGGERVDLPDLLEDLYERGIKRLMVEGGGTLIWSMFKEGL 161 (217)
T ss_pred CCEEEEEcCC--CCHHHHHHHH-HCCCEEEEeCCCCcCHHHHHHHHHHCCCCEEEEecCHHHHHHHHHCCC
Confidence 4666666432 2233456666 46665310 00011122334555666689999999999888878874
No 303
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=29.98 E-value=91 Score=25.15 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=26.0
Q ss_pred CceEEEEecCCeeee-----CCccC--ccHHHHHHHHHHhcCCCccccEEEEeCCCCC
Q psy17092 5 PSFGLIFDIDGVLVR-----GKQVL--PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS 55 (183)
Q Consensus 5 ~~~~iifDiDGVL~~-----g~~~i--pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~ 55 (183)
+.+++++||=++.+. ++... +.+.++.++.|.+......-+++||||-.|.
T Consensus 75 ~~~~VLvDcLt~wvtNll~~~e~~~~~~~~~~~~~~~L~~al~~~~~~~ilVsNEvG~ 132 (175)
T COG2087 75 PGDVVLVDCLTLWVTNLLFAGEKDWSAEAAIEAEIEALLAALSRAPGTVVLVSNEVGL 132 (175)
T ss_pred CCCEEEEEcHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCCccEEEEecCccC
Confidence 358899999775542 21111 2223222233333221222379999996543
No 304
>KOG1605|consensus
Probab=29.70 E-value=32 Score=29.42 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=30.6
Q ss_pred CceEEEEecCCeeeeCCc-cCcc-HHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHH
Q psy17092 5 PSFGLIFDIDGVLVRGKQ-VLPG-VQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTE 66 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~-~ipg-A~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~ 66 (183)
+.+++++|+|.||+++.. .-|. ..++. -.+.-.+ + ...+++-++.+.. +..+++.+
T Consensus 88 ~kk~lVLDLDeTLvHss~~~~~~~~~d~~-~~v~~~~-~--~~~~yV~kRP~vd--eFL~~~s~ 145 (262)
T KOG1605|consen 88 GRKTLVLDLDETLVHSSLNLKPIVNADFT-VPVEIDG-H--IHQVYVRKRPHVD--EFLSRVSK 145 (262)
T ss_pred CCceEEEeCCCcccccccccCCCCCccee-eeeeeCC-c--ceEEEEEcCCCHH--HHHHHhHH
Confidence 458999999999998874 2221 22222 2222112 1 3347777665443 34555543
No 305
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=29.28 E-value=2.3e+02 Score=23.33 Aligned_cols=17 Identities=24% Similarity=0.168 Sum_probs=13.0
Q ss_pred CCCCceEEEEecCCeee
Q psy17092 2 ILSPSFGLIFDIDGVLV 18 (183)
Q Consensus 2 ~~~~~~~iifDiDGVL~ 18 (183)
+.+.|+.+++||=|.+.
T Consensus 115 ~~~~yD~iliD~~~~~~ 131 (275)
T PRK13233 115 YTDDLDFVFFDVLGDVV 131 (275)
T ss_pred ccCCCCEEEEecCCcee
Confidence 45678999999977653
No 306
>PF03925 SeqA: SeqA protein; InterPro: IPR005621 The binding of SeqA protein to hemimethylated GATC sequences is important in the negative modulation of chromosomal initiation at oriC, and in the formation of SeqA foci necessary for Escherichia coli chromosome segregation []. SeqA tetramers are able to aggregate or multimerize in a reversible, concentration-dependent manner []. Apart from its function in the control of DNA replication, SeqA may also be a specific transcription factor []. The C-terminal domain binds DNA, binding to fully methylated and hemimethylated GATC sequences at oriC. The structure of the C-terminal domain consists of seven alpha-helices and three-stranded beta-sheet.; GO: 0003677 DNA binding, 0032297 negative regulation of DNA-dependent DNA replication initiation; PDB: 3FMT_A 1J3E_A 1XRX_D 1IU3_C 1LRR_D.
Probab=29.07 E-value=31 Score=28.22 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=16.3
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHhCCCC
Q psy17092 44 VPTVFVTNAGNSLAADKAKQLTEWLGVEV 72 (183)
Q Consensus 44 i~~~~lTNns~~~~~~~~~~L~~~lG~~~ 72 (183)
-||+++|||.+-....+++++...||++.
T Consensus 152 TpfWVITN~NT~RKr~Mle~vM~~mg~p~ 180 (190)
T PF03925_consen 152 TPFWVITNNNTGRKRSMLEEVMQSMGYPA 180 (190)
T ss_dssp SS-EEE--S-HHHHHHHHHHHHHHTT--H
T ss_pred CCeEEEecCChHHHHHHHHHHHHHhCCCH
Confidence 46999999876656666666666899983
No 307
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=28.92 E-value=2.1e+02 Score=22.55 Aligned_cols=21 Identities=10% Similarity=-0.095 Sum_probs=12.5
Q ss_pred hhccc-cccCCCCCCCCccccc
Q psy17092 154 ELKIT-DRSLDHKAKIGRSEAT 174 (183)
Q Consensus 154 ~l~~~-~~~l~~~~~~~~~~~~ 174 (183)
..++. .++++-=|.++.++..
T Consensus 198 ~~g~~~p~di~vig~d~~~~~~ 219 (268)
T cd01575 198 RRGISVPEDIAIAGFGDLEIAA 219 (268)
T ss_pred HhCCCCCcceEEEecCCchhhh
Confidence 44544 4567777777766543
No 308
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=28.63 E-value=60 Score=23.64 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=18.1
Q ss_pred EEEEecCCeeeeCCccCccHHHHHHHHHH
Q psy17092 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLT 36 (183)
Q Consensus 8 ~iifDiDGVL~~g~~~ipgA~e~l~~~l~ 36 (183)
.++||.|+|+|- ||.|.+ +.|+
T Consensus 6 ~v~~~~~~v~Wv------gaDEil-~IL~ 27 (97)
T PF04512_consen 6 PVFFDVDMVLWV------GADEIL-SILR 27 (97)
T ss_pred eEEEecCceEEe------cHHHHH-HHhC
Confidence 478999999998 688877 7775
No 309
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=28.22 E-value=38 Score=31.82 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=17.5
Q ss_pred ceEEEEecCCeeeeCCccCcc
Q psy17092 6 SFGLIFDIDGVLVRGKQVLPG 26 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~ipg 26 (183)
..++++|+||||.++...+|-
T Consensus 50 ~~t~v~d~~g~Ll~s~s~Fpy 70 (525)
T PLN02588 50 NHTLIFNVEGALLKSNSLFPY 70 (525)
T ss_pred cceEEEecccceeccCCCCcc
Confidence 357999999999998877664
No 310
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=27.97 E-value=62 Score=28.42 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=42.3
Q ss_pred HHHHhcCCCccccEEEEeCCCCC-CHHHHHHHHHHHhCCCCCccceeccHH-HHHHH----HhcCCCeEEEEcCh----h
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNS-LAADKAKQLTEWLGVEVEEDQVVMSHT-PIKML----HKYHTKHTLISGQG----P 102 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~-~~~~~~~~L~~~lG~~~~~~~I~ts~~-a~~~l----~~~~~k~v~viG~~----~ 102 (183)
+.|+++ |++|++.+..--|. ......+.+.+.+|.+..++.+..... ....+ ....++++++.|.+ +
T Consensus 209 ~~L~e~---~giP~~~~~~p~G~~~t~~~l~~i~~~lg~~~~~~~i~~~~~~~~~~l~~~~~~l~g~~v~i~~~~~~~~~ 285 (398)
T PF00148_consen 209 EWLEER---FGIPYLYFPSPYGIEGTDAWLRAIAEALGKPIAEAEIAEERERAEDALADYRERLGGKRVAIYGDPDRALG 285 (398)
T ss_dssp HHHHHH---HT-EEEEEC-SBSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEESSHHHHHH
T ss_pred HHHHHH---hCCCeeeccccccHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhHHhhcCceEEEEcCchhHHH
Confidence 566653 44898886544333 233445667777774432333322221 11122 13468999999975 5
Q ss_pred HHHHHHHCCCcee
Q psy17092 103 MEEIAKRLGFNKV 115 (183)
Q Consensus 103 ~~~~l~~~G~~~~ 115 (183)
+...+.++|++..
T Consensus 286 l~~~L~elG~~v~ 298 (398)
T PF00148_consen 286 LARFLEELGMEVV 298 (398)
T ss_dssp HHHHHHHTT-EEE
T ss_pred HHHHHHHcCCeEE
Confidence 5666789998654
No 311
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=27.85 E-value=3.7e+02 Score=22.65 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=51.6
Q ss_pred HHHHhcCCCccccE-EEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHH-HHHHHhcCCCeEEEEcCh------hHH
Q psy17092 33 NKLTNSGGRFVVPT-VFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTP-IKMLHKYHTKHTLISGQG------PME 104 (183)
Q Consensus 33 ~~l~~~ggk~~i~~-~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a-~~~l~~~~~k~v~viG~~------~~~ 104 (183)
+.|.+.| -.+ ++.|| |..-+++.+.+..++++ +.-..+ +.-+++.+-++|.++|+. -.+
T Consensus 69 ~~Le~~G----Ad~i~l~~N----T~H~~~d~iq~~~~iPl-----lhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY~ 135 (230)
T COG1794 69 KKLERAG----ADFIVLPTN----TMHKVADDIQKAVGIPL-----LHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFYR 135 (230)
T ss_pred HHHHhcC----CCEEEEeCC----cHHHHHHHHHHhcCCCe-----ehHHHHHHHHHHhcCCceeEEeeccchHHhHHHH
Confidence 5565555 455 55555 45557888888888883 322223 335555567899999973 335
Q ss_pred HHHHHCCCceeeCHHHHHhhcCC
Q psy17092 105 EIAKRLGFNKVVTVDSIRNAHPL 127 (183)
Q Consensus 105 ~~l~~~G~~~~~t~~~l~~a~p~ 127 (183)
+.++..|++.++--++-+.....
T Consensus 136 ~~l~~~gievvvPdd~~q~~v~~ 158 (230)
T COG1794 136 KRLEEKGIEVVVPDDDEQAEVNR 158 (230)
T ss_pred HHHHHCCceEecCCHHHHHHHHH
Confidence 66788998887766654444433
No 312
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=27.83 E-value=1.4e+02 Score=26.56 Aligned_cols=50 Identities=16% Similarity=0.373 Sum_probs=27.1
Q ss_pred EecCCeeeeCCccC-ccHHHH--HHHHHHhcCCCccccEEEE-eCCCCCCHHHHHHHHH
Q psy17092 11 FDIDGVLVRGKQVL-PGVQDT--FMNKLTNSGGRFVVPTVFV-TNAGNSLAADKAKQLT 65 (183)
Q Consensus 11 fDiDGVL~~g~~~i-pgA~e~--l~~~l~~~ggk~~i~~~~l-TNns~~~~~~~~~~L~ 65 (183)
+++|||++...+.- +...+. +-+.+++.| +|++.+ |..+ .+..++..++.
T Consensus 312 ~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~G----IP~L~iE~D~~-~~~gQi~TRlE 365 (377)
T TIGR03190 312 YNVQGAIFLQQKFCDPHEGDYPDLKRHLEANG----IPTLFLEFDIT-NPIGPFRIRIE 365 (377)
T ss_pred hCCCEEEEecccCCCcchhhhHHHHHHHHHCC----CCEEEEecCCC-CchHHHHHHHH
Confidence 46889998776532 222222 214555555 897777 5544 34555544443
No 313
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=27.82 E-value=3.2e+02 Score=24.26 Aligned_cols=95 Identities=11% Similarity=0.157 Sum_probs=60.6
Q ss_pred cCCeeeeCC----ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHHHHH
Q psy17092 13 IDGVLVRGK----QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIKMLH 88 (183)
Q Consensus 13 iDGVL~~g~----~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~~l~ 88 (183)
-|||-++.= -+-.+...++ ++|++ +|. -.++-|-++.|.|-.++++...+..|.++..+. ..
T Consensus 216 ~DGT~iRDYIHV~DLA~aH~~Al-~~L~~-~g~--~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~----------~~ 281 (329)
T COG1087 216 KDGTCIRDYIHVDDLADAHVLAL-KYLKE-GGS--NNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEI----------AP 281 (329)
T ss_pred CCCCeeeeeeehhHHHHHHHHHH-HHHHh-CCc--eeEEEccCCCceeHHHHHHHHHHHhCCcCceee----------CC
Confidence 378888752 3344566677 88887 432 147888888999999999999988888764331 11
Q ss_pred hcCCCeEEEEcChhHHHHHHHCCCceee-CHHHHHh
Q psy17092 89 KYHTKHTLISGQGPMEEIAKRLGFNKVV-TVDSIRN 123 (183)
Q Consensus 89 ~~~~k~v~viG~~~~~~~l~~~G~~~~~-t~~~l~~ 123 (183)
+..+...-++++.... .+.+||+... +.+++.+
T Consensus 282 RR~GDpa~l~Ad~~kA--~~~Lgw~p~~~~L~~ii~ 315 (329)
T COG1087 282 RRAGDPAILVADSSKA--RQILGWQPTYDDLEDIIK 315 (329)
T ss_pred CCCCCCceeEeCHHHH--HHHhCCCcccCCHHHHHH
Confidence 2234444445543322 3358888766 6666654
No 314
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=27.47 E-value=2.1e+02 Score=25.73 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=44.6
Q ss_pred HHHHhcCCCccccEEEEeC-CCCCCHHHHHHHHHHHhCCCCCccceeccHHH--HHHH----HhcCCCeEEEEcCh----
Q psy17092 33 NKLTNSGGRFVVPTVFVTN-AGNSLAADKAKQLTEWLGVEVEEDQVVMSHTP--IKML----HKYHTKHTLISGQG---- 101 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTN-ns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a--~~~l----~~~~~k~v~viG~~---- 101 (183)
+.|++ +|++|++.+.. .+-.......+.+.+.+|++...+.++..... ...+ ....++++.+.|.+
T Consensus 230 ~~Lee---~~GiP~~~~~~P~G~~~T~~~l~~ia~~~g~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~~~i~~~~~~~~ 306 (426)
T cd01972 230 AALEQ---RFGVPEIKAPQPYGIEATDKWLREIAKVLGMEAEAEAVIEREHERVAPEIEELRKALKGKKAIVETGAAYGH 306 (426)
T ss_pred HHHHH---HhCCCeEecCCccCHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCccHH
Confidence 45544 35589776543 23334445566677778875433444433221 1122 23478888877754
Q ss_pred hHHHHHHHCC-Ccee
Q psy17092 102 PMEEIAKRLG-FNKV 115 (183)
Q Consensus 102 ~~~~~l~~~G-~~~~ 115 (183)
.+...+.++| ....
T Consensus 307 ~~~~~l~elG~~~v~ 321 (426)
T cd01972 307 LLIAVLRELGFGEVP 321 (426)
T ss_pred HHHHHHHHcCCceEE
Confidence 4556678899 5543
No 315
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=27.35 E-value=3.9e+02 Score=22.81 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=18.3
Q ss_pred CCCeEEEEcChhHHHHH--HHCCCcee
Q psy17092 91 HTKHTLISGQGPMEEIA--KRLGFNKV 115 (183)
Q Consensus 91 ~~k~v~viG~~~~~~~l--~~~G~~~~ 115 (183)
+.+++++||..-..+++ ..+|++..
T Consensus 206 ~~~~~~mVGD~~~TDI~~a~~~G~~t~ 232 (269)
T COG0647 206 DRSEVLMVGDRLDTDILGAKAAGLDTL 232 (269)
T ss_pred CcccEEEEcCCchhhHHHHHHcCCCEE
Confidence 34689999987666664 67888764
No 316
>KOG3085|consensus
Probab=26.96 E-value=59 Score=27.41 Aligned_cols=87 Identities=23% Similarity=0.270 Sum_probs=58.2
Q ss_pred CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHH------HHH----Hhc
Q psy17092 21 KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPI------KML----HKY 90 (183)
Q Consensus 21 ~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~------~~l----~~~ 90 (183)
...+.++.+++ +.|++.| ..+.++||.-.+.+ .+...+|+..--|.++.|..+- +++ .+.
T Consensus 112 ~~~~~~~~~~l-q~lR~~g----~~l~iisN~d~r~~-----~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l 181 (237)
T KOG3085|consen 112 WKYLDGMQELL-QKLRKKG----TILGIISNFDDRLR-----LLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERL 181 (237)
T ss_pred ceeccHHHHHH-HHHHhCC----eEEEEecCCcHHHH-----HHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHh
Confidence 45678888999 9999987 67788888766644 2333688876677888886421 222 222
Q ss_pred --CCCeEEEEcChhHH--HHHHHCCCceeeC
Q psy17092 91 --HTKHTLISGQGPME--EIAKRLGFNKVVT 117 (183)
Q Consensus 91 --~~k~v~viG~~~~~--~~l~~~G~~~~~t 117 (183)
+..-++.||..... +-++++|....+-
T Consensus 182 ~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv 212 (237)
T KOG3085|consen 182 GVKPEECVHIGDLLENDYEGARNLGWHAILV 212 (237)
T ss_pred CCChHHeEEecCccccccHhHHHcCCEEEEE
Confidence 34568889976443 4578899876543
No 317
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=26.90 E-value=2.3e+02 Score=25.96 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=41.4
Q ss_pred CccccEEEEeCC-CCCCHHHHHHHHHHHhCCCCCccceeccHH-HHH-HH---H-hcCCCeEEEEcCh----hHHHHHHH
Q psy17092 41 RFVVPTVFVTNA-GNSLAADKAKQLTEWLGVEVEEDQVVMSHT-PIK-ML---H-KYHTKHTLISGQG----PMEEIAKR 109 (183)
Q Consensus 41 k~~i~~~~lTNn-s~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-a~~-~l---~-~~~~k~v~viG~~----~~~~~l~~ 109 (183)
+|++|++.+..- +-.........+.+.+|.++. +.+..... ... ++ . .+.++++.+.|.+ ++.+.+.+
T Consensus 248 ~fGiPyi~~~~P~G~~~T~~~l~~ia~~~g~~~~-e~i~~er~~~~~~~~~~~~~~l~Gkrv~i~g~~~~~~~l~~fl~e 326 (454)
T cd01973 248 KFDVPAILGPTPIGIKNTDAFLQNIKELTGKPIP-ESLVRERGIAIDALADLAHMFFANKKVAIFGHPDLVIGLAEFCLE 326 (454)
T ss_pred HHCCCeeccCCCcChHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHHHH
Confidence 356887765432 223344456667777787753 33332211 111 11 1 2468999988876 34445567
Q ss_pred CCCceee
Q psy17092 110 LGFNKVV 116 (183)
Q Consensus 110 ~G~~~~~ 116 (183)
+|+..+.
T Consensus 327 lGm~~~~ 333 (454)
T cd01973 327 VEMKPVL 333 (454)
T ss_pred CCCeEEE
Confidence 8987644
No 318
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.32 E-value=1.3e+02 Score=25.78 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=30.6
Q ss_pred CCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 20 GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 20 g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
+.+..|||.+++ +.|++.- .|+++-| +-.+++.++.+.+|++
T Consensus 81 sa~lvPgA~etm-~~l~~~~----tp~v~ST-----SY~qy~~r~a~~ig~P 122 (315)
T COG4030 81 SAKLVPGAEETM-ATLQERW----TPVVIST-----SYTQYLRRTASMIGVP 122 (315)
T ss_pred hcccCCChHHHH-HHHhccC----CceEEec-----cHHHHHHHHHHhcCCC
Confidence 347899999999 9888754 4555544 4566788888778874
No 319
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=26.26 E-value=1.8e+02 Score=26.40 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=42.3
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCC---CccceeccHH-HH-HHH----HhcCCCeEEEEcCh--
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEV---EEDQVVMSHT-PI-KML----HKYHTKHTLISGQG-- 101 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~---~~~~I~ts~~-a~-~~l----~~~~~k~v~viG~~-- 101 (183)
+.|++ +|++|++-.+=.+-.......+.+.+.+|.+- ..++++.... .+ ..+ ..+.++++.+.+.+
T Consensus 261 ~~L~e---~~GiP~~~~~~~G~~~T~~~L~~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~ 337 (456)
T TIGR01283 261 RKMEE---KYGIPYFEGSFYGIEDTSKALRDIADLFGDEELLKRTEELIAREEAKIRPALEPYRERLKGKKAAIYTGGVK 337 (456)
T ss_pred HHHHH---HcCCCEEecCCCcHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCch
Confidence 55654 34589775321222234444566666677431 1223332221 11 122 23578888776553
Q ss_pred --hHHHHHHHCCCceeeC
Q psy17092 102 --PMEEIAKRLGFNKVVT 117 (183)
Q Consensus 102 --~~~~~l~~~G~~~~~t 117 (183)
++...+.++|++.+..
T Consensus 338 ~~~l~~~l~elGmevv~~ 355 (456)
T TIGR01283 338 SWSLVSALQDLGMEVVAT 355 (456)
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 4556678999986543
No 320
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=26.17 E-value=35 Score=30.25 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=17.0
Q ss_pred CCCceEEEEecCCeeeeCCc
Q psy17092 3 LSPSFGLIFDIDGVLVRGKQ 22 (183)
Q Consensus 3 ~~~~~~iifDiDGVL~~g~~ 22 (183)
+..+++|-||||.||.+-+.
T Consensus 9 l~~i~~~GFDmDyTLa~Y~~ 28 (343)
T TIGR02244 9 LEKIQVFGFDMDYTLAQYKS 28 (343)
T ss_pred cccCCEEEECccccccccCh
Confidence 45789999999999998665
No 321
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=25.92 E-value=3.5e+02 Score=24.53 Aligned_cols=49 Identities=27% Similarity=0.366 Sum_probs=36.0
Q ss_pred CCccCccHHHHHHHHHHhcCCCccccEEEEeCCC-------CCCHHHHHHHHHHHhCCCCC
Q psy17092 20 GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAG-------NSLAADKAKQLTEWLGVEVE 73 (183)
Q Consensus 20 g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns-------~~~~~~~~~~L~~~lG~~~~ 73 (183)
...-|..+..+| ++|.++|+ +++++|--+ ..|-+..++.|.+.+|.++.
T Consensus 31 dd~RI~~~lpTI-~~l~~~ga----kvvl~sH~gRP~g~~~~~SL~~va~~L~~lL~~~V~ 86 (389)
T PRK00073 31 DDTRIRAALPTI-KYLLEKGA----KVILLSHLGRPKGEDPEFSLAPVAKRLSELLGKEVK 86 (389)
T ss_pred ChHhHHHHHHHH-HHHHHCCC----eEEEEEecCCCCCCCCCcCHHHHHHHHHHHhCCCeE
Confidence 345567788888 99998873 577777655 24567788899999998863
No 322
>cd01037 Restriction_endonuclease_like Superfamily of nucleases including Short Patch Repair (Vsr) Endonucleases, archaeal Holliday junction resolvases, MutH methy-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI
Probab=25.83 E-value=1e+02 Score=19.08 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=23.4
Q ss_pred eEEEEecCCeeeeCCccCccHH---HHHHHHHHhcCCCccccEEEEe
Q psy17092 7 FGLIFDIDGVLVRGKQVLPGVQ---DTFMNKLTNSGGRFVVPTVFVT 50 (183)
Q Consensus 7 ~~iifDiDGVL~~g~~~ipgA~---e~l~~~l~~~ggk~~i~~~~lT 50 (183)
..++.++||+-+++...-.... +.. ..+...| ..++++.
T Consensus 38 ~~~~ie~kg~~~~~~~~~~~~~~~~~~~-~~l~~~g----~~~~~~~ 79 (80)
T cd01037 38 AKLVIELKGTFHDGLLRKLRTSEKQERI-AFLEADG----KKVLRFW 79 (80)
T ss_pred CCEEEEEECccccCchhhhhhcchHHHH-HHHHHCC----CEEEEEe
Confidence 4678899999998765433322 333 5566555 4554443
No 323
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=25.75 E-value=1.3e+02 Score=23.76 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=9.5
Q ss_pred HHHHHHhcCCCeEEEEc
Q psy17092 83 PIKMLHKYHTKHTLISG 99 (183)
Q Consensus 83 a~~~l~~~~~k~v~viG 99 (183)
++.++.+.+.+++.+++
T Consensus 107 ~~~~l~~~g~~~i~~l~ 123 (268)
T cd06298 107 ATELLIKNGHKKIAFIS 123 (268)
T ss_pred HHHHHHHcCCceEEEEe
Confidence 34455444556676665
No 324
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=25.70 E-value=3.4e+02 Score=23.54 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=45.1
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH--HHHHH----HhcCCCeEEEEcCh----h
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT--PIKML----HKYHTKHTLISGQG----P 102 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~--a~~~l----~~~~~k~v~viG~~----~ 102 (183)
+.|++. +++|++...=.+-.......+.+.+.+|+....++.+.... ....+ ....++++++.|.+ .
T Consensus 217 ~~l~~~---~g~p~~~~~p~G~~~t~~~l~~i~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~l~g~~~~i~~~~~~~~~ 293 (399)
T cd00316 217 RYLEEK---YGIPYILINPIGLEATDAFLRKLAELFGIEKEVPEVIARERARLLDALADYHEYLGGKKVAIFGDGDLLLA 293 (399)
T ss_pred HHHHHH---hCCCeEEeCCcCHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCcHHHH
Confidence 556553 44898776633333444456667777886333333433321 11122 23578999888865 3
Q ss_pred HHHHHHHCCCce
Q psy17092 103 MEEIAKRLGFNK 114 (183)
Q Consensus 103 ~~~~l~~~G~~~ 114 (183)
+...+.++|++.
T Consensus 294 ~~~~l~e~G~~v 305 (399)
T cd00316 294 LARFLLELGMEV 305 (399)
T ss_pred HHHHHHHCCCEE
Confidence 455678899874
No 325
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=25.64 E-value=74 Score=24.96 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=23.4
Q ss_pred CccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 41 RFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 41 k~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|||.||++.-+ +++..++...+.+.++-+
T Consensus 106 kFGfpFii~v~--g~s~~~IL~~l~~Rl~n~ 134 (158)
T TIGR03180 106 KFGRIFLIRAA--GRSAEEMLDALQARLPND 134 (158)
T ss_pred HCCCeEEEeeC--CCCHHHHHHHHHHHhCCC
Confidence 57899887766 688899999999888854
No 326
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=25.58 E-value=3.1e+02 Score=23.24 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=11.8
Q ss_pred CCceEEEEecCCeee
Q psy17092 4 SPSFGLIFDIDGVLV 18 (183)
Q Consensus 4 ~~~~~iifDiDGVL~ 18 (183)
+.|+.|++||=|.+.
T Consensus 118 ~~yD~IlID~~~~~~ 132 (295)
T PRK13234 118 DDVDYVSYDVLGDVV 132 (295)
T ss_pred ccCCEEEEEcCCCce
Confidence 678999999966543
No 327
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=25.40 E-value=3.6e+02 Score=24.69 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCC--------CCHHHHHHHHHHHhCCCCC-ccceeccHHHH
Q psy17092 14 DGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGN--------SLAADKAKQLTEWLGVEVE-EDQVVMSHTPI 84 (183)
Q Consensus 14 DGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~--------~~~~~~~~~L~~~lG~~~~-~~~I~ts~~a~ 84 (183)
||.+.+ .+-|..+..+| ++|.++|+ ++++++|--+. .|.+..++.|.+.+|.++. .++++.+ .+.
T Consensus 32 ~g~I~D-d~RI~~~lpTI-~~L~~~ga---k~vvl~SHlGRP~g~~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~-~~~ 105 (417)
T PTZ00005 32 EGVIKD-ATRIKATLPTI-KYLLEQGA---KSVVLMSHLGRPDGRRVEKYSLKPVVPKLEELLGKKVTFLNDCVGP-EVE 105 (417)
T ss_pred CCcCCC-hHhHHHHHHHH-HHHHHCCC---CEEEEEecCCCCCCCcCcccCHHHHHHHHHHHHCCCeEECCCCCCH-HHH
Confidence 565443 44567788888 99998884 24778887432 3677789999999998875 2344422 222
Q ss_pred HHHHhcCCCeEEEE
Q psy17092 85 KMLHKYHTKHTLIS 98 (183)
Q Consensus 85 ~~l~~~~~k~v~vi 98 (183)
..+....+..|+++
T Consensus 106 ~~i~~l~~GeVlLL 119 (417)
T PTZ00005 106 EACANAKNGSVILL 119 (417)
T ss_pred HHHHcCCCCCEEEE
Confidence 23444444444444
No 328
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=25.39 E-value=1.6e+02 Score=22.99 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=12.6
Q ss_pred hhccccccCCCCCCCCccccc
Q psy17092 154 ELKITDRSLDHKAKIGRSEAT 174 (183)
Q Consensus 154 ~l~~~~~~l~~~~~~~~~~~~ 174 (183)
..++. .+++.=|.++.+.+.
T Consensus 202 ~~g~~-~~i~ivg~d~~~~~~ 221 (267)
T cd01536 202 AAGRK-GDVKIVGVDGSPEAL 221 (267)
T ss_pred hcCCC-CCceEEecCCChhHH
Confidence 45666 667777777765443
No 329
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=25.25 E-value=2.1e+02 Score=24.91 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=25.6
Q ss_pred CCcc-CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHH
Q psy17092 20 GKQV-LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQL 64 (183)
Q Consensus 20 g~~~-ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L 64 (183)
|++. .|...+++ +.+++.| +.+.+.||++. + +.+++|
T Consensus 139 GEPlL~p~l~eli-~~~k~~G----i~~~L~TNG~~--~-e~l~~L 176 (322)
T PRK13762 139 GEPTLYPYLPELI-EEFHKRG----FTTFLVTNGTR--P-DVLEKL 176 (322)
T ss_pred ccccchhhHHHHH-HHHHHcC----CCEEEECCCCC--H-HHHHHH
Confidence 4443 45677777 9998877 89999999754 2 345555
No 330
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=25.23 E-value=78 Score=32.12 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=37.2
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCC
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGV 70 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~ 70 (183)
|-+.-.+++=|++.++| +.|++.| ++++++|.....|...++ +..|+
T Consensus 649 Gli~~~d~lr~~~~~~I-~~l~~ag----i~v~miTGD~~~TA~~iA----~~~gi 695 (1054)
T TIGR01657 649 GFIVFENPLKPDTKEVI-KELKRAS----IRTVMITGDNPLTAVHVA----RECGI 695 (1054)
T ss_pred EEEEEecCCCccHHHHH-HHHHHCC----CeEEEECCCCHHHHHHHH----HHcCC
Confidence 66777788999999999 9999988 999999976666655444 45666
No 331
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=25.17 E-value=3.7e+02 Score=21.70 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=43.1
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccc-eeccHHHHHHHHh-------cCCC
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQ-VVMSHTPIKMLHK-------YHTK 93 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~-I~ts~~a~~~l~~-------~~~k 93 (183)
++-+++.++. +.|++.|.. ++.+=+-.-....... +. .+ .-..+- |+||..+...+.. ..+.
T Consensus 7 Rp~~~~~~l~-~~L~~~G~~---~~~~P~i~i~~~~~~~---~~-~l--~~~~d~iifTS~naV~~~~~~~~~~~~~~~~ 76 (240)
T PRK09189 7 RPEPAAERTA-ARLRAMGHE---PVLLPLSRPVHDVAAA---FT-AL--SEPHGAIAVTSAEAVRHLAALGERLLPHLAL 76 (240)
T ss_pred CCCCchHHHH-HHHHHCCCc---eEEecccccccChhhh---hh-hh--cCCcCEEEEECHHHHHHHHhcchhhHHhcCC
Confidence 3456777777 889888742 2222111111111111 11 11 111233 5788877665432 2356
Q ss_pred eEEEEcChhHHHHHHHCCCcee
Q psy17092 94 HTLISGQGPMEEIAKRLGFNKV 115 (183)
Q Consensus 94 ~v~viG~~~~~~~l~~~G~~~~ 115 (183)
++++||.. -.+.++++||..+
T Consensus 77 ~~~aVG~~-Ta~~l~~~G~~~~ 97 (240)
T PRK09189 77 PLFAVGEA-TAEAARELGFRHV 97 (240)
T ss_pred eEEEEcHH-HHHHHHHcCCCCC
Confidence 89999965 5566778998743
No 332
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=24.98 E-value=66 Score=32.46 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=34.1
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCC
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGV 70 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~ 70 (183)
|.+--.+++=|++.+++ +.+++.| ++++++|.....+... +.+.+|+
T Consensus 561 Gli~i~Dplr~~v~~aI-~~l~~~G----i~v~~~TGd~~~ta~~----ia~~~gi 607 (997)
T TIGR01106 561 GLISMIDPPRAAVPDAV-GKCRSAG----IKVIMVTGDHPITAKA----IAKGVGI 607 (997)
T ss_pred EEEeccCCChHHHHHHH-HHHHHCC----CeEEEECCCCHHHHHH----HHHHcCC
Confidence 44555678889999999 9999988 8999998655444333 3445666
No 333
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=24.95 E-value=2.6e+02 Score=24.62 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=43.5
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHH--HHHHH----HhcCCCeEEEEcCh----h
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHT--PIKML----HKYHTKHTLISGQG----P 102 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~--a~~~l----~~~~~k~v~viG~~----~ 102 (183)
+.|+++ +++|++...=.+-.......+.|.+.+|.....++.+.... ....+ ....++++++.+.+ .
T Consensus 224 ~~L~~r---~GiP~~~~~p~G~~~t~~~l~~l~~~lg~~~~~~~~i~~~~~~~~~~l~~~~~~l~gkrv~I~~~~~~~~~ 300 (406)
T cd01967 224 REMEER---YGIPYMEVNFYGFEDTSESLRKIAKFFGDEEKAEEVIAEEEARIKPELEKYRERLKGKKVIIYTGGARSWH 300 (406)
T ss_pred HHHHHh---hCCCEEEecCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEccCcchHH
Confidence 666653 45898664323344445556677777787322223332221 11122 22467888877643 3
Q ss_pred HHHHHHHCCCcee
Q psy17092 103 MEEIAKRLGFNKV 115 (183)
Q Consensus 103 ~~~~l~~~G~~~~ 115 (183)
+...+.++|++..
T Consensus 301 ~~~~l~elG~~v~ 313 (406)
T cd01967 301 VIAALRELGMEVV 313 (406)
T ss_pred HHHHHHHcCCEEE
Confidence 4466788999854
No 334
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=24.54 E-value=71 Score=32.53 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=36.7
Q ss_pred CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC
Q psy17092 15 GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 15 GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~ 71 (183)
|.+.-.+++=|++.++| +.|++.| +.++++|.....+... +.+.+|+.
T Consensus 639 G~~~~~Dp~r~~v~~aI-~~l~~aG----Ikv~MiTGD~~~tA~~----iA~~~Gi~ 686 (1053)
T TIGR01523 639 GLIGIYDPPRNESAGAV-EKCHQAG----INVHMLTGDFPETAKA----IAQEVGII 686 (1053)
T ss_pred EEEeeecCCchhHHHHH-HHHHHCC----CEEEEECCCCHHHHHH----HHHHcCCC
Confidence 55666788899999999 9999988 9999998766555444 44457763
No 335
>KOG2882|consensus
Probab=24.35 E-value=3.1e+02 Score=24.10 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=55.2
Q ss_pred CceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCH----------HHHHHHHHHHhCCCCCc
Q psy17092 5 PSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLA----------ADKAKQLTEWLGVEVEE 74 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~----------~~~~~~L~~~lG~~~~~ 74 (183)
...+|+++.|= +=-++.-..++ ++|++.+ =.++.||.-...+ -.++..+.. ....
T Consensus 153 ~VgAVvvg~D~-----hfsy~KL~kA~-~yLqnP~-----clflatn~D~~~p~~~~~~ipG~G~~v~av~~----~t~R 217 (306)
T KOG2882|consen 153 DVGAVVVGYDE-----HFSYPKLMKAL-NYLQNPG-----CLFLATNRDATTPPTPGVEIPGAGSFVAAVKF----ATGR 217 (306)
T ss_pred CCCEEEEeccc-----ccCHHHHHHHH-HHhCCCC-----cEEEeccCccccCCCCCeeccCCccHHHHHHH----HhcC
Confidence 35677777763 22344555667 7887543 2355566655333 011222221 1112
Q ss_pred cceecc--HHHH-HHH-Hhc--CCCeEEEEcChhHHHHH--HHCCCcee------eCHHHHHhhc
Q psy17092 75 DQVVMS--HTPI-KML-HKY--HTKHTLISGQGPMEEIA--KRLGFNKV------VTVDSIRNAH 125 (183)
Q Consensus 75 ~~I~ts--~~a~-~~l-~~~--~~k~v~viG~~~~~~~l--~~~G~~~~------~t~~~l~~a~ 125 (183)
+-++.. +..+ ..+ +++ ..++++++|..--.+++ +.+||+.. -+.+++.++.
T Consensus 218 ~P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~ 282 (306)
T KOG2882|consen 218 QPIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQ 282 (306)
T ss_pred CCeecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcc
Confidence 223322 2333 233 343 45789999987766665 67888764 4555665553
No 336
>KOG2967|consensus
Probab=24.31 E-value=1.6e+02 Score=25.89 Aligned_cols=103 Identities=12% Similarity=0.187 Sum_probs=53.4
Q ss_pred EEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccE-EEEeCCCCCCHHHHHHHHHHHhCCC---------------
Q psy17092 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPT-VFVTNAGNSLAADKAKQLTEWLGVE--------------- 71 (183)
Q Consensus 8 ~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~-~~lTNns~~~~~~~~~~L~~~lG~~--------------- 71 (183)
=|++||+=+=+-..+-+-....-+ .++...+....-|| +.+||..++.... ..+.+ .|-.
T Consensus 100 rivlD~sfd~lM~~kei~~l~~Qi-~~~y~~Nr~a~~Pf~l~~~n~~~~~~~~--~~l~~-~~~~~~n~~~~~~~~~~~s 175 (314)
T KOG2967|consen 100 RIVLDCSFDELMNEKEIVNLVNQI-QRCYSENRRAKHPFHLHFTNFQGDIFKR--QDLVK-KNPGYENWKRIILYPECTS 175 (314)
T ss_pred eEEEeccHHHHHhHHHHHHHHHHH-HHHhhhcccCCCCeEEEEecCCcchHHH--HHHHh-cCCCcccceeeeccccccc
Confidence 378888754444444333333333 45554443333565 8899988876653 23332 2221
Q ss_pred -C--Cccce-eccHHHHHHHHhcCCCeEEEEcC--------hhHHHHHHHCCCce
Q psy17092 72 -V--EEDQV-VMSHTPIKMLHKYHTKHTLISGQ--------GPMEEIAKRLGFNK 114 (183)
Q Consensus 72 -~--~~~~I-~ts~~a~~~l~~~~~k~v~viG~--------~~~~~~l~~~G~~~ 114 (183)
+ ..+++ +.+..+-..|..+....||+||. +-+..-++++|+..
T Consensus 176 ~~~~kkenlVYLT~ds~~vL~dldp~~vYiIGglVD~n~~k~l~~~kA~~~gi~t 230 (314)
T KOG2967|consen 176 LLPFKKENLVYLTADSENVLEDLDPDKVYIIGGLVDKNRQKGLTLSKAQEYGIRT 230 (314)
T ss_pred cccCCccceEEECCCCccchhccCCCcEEEEEEEecCCCCcchhHHHHHHcCCCc
Confidence 0 01111 22221222344556788999995 23466677888754
No 337
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.31 E-value=3.7e+02 Score=21.38 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=17.5
Q ss_pred HHHHHHhcCCCeEEEEcCh----------hHHHHHHHCCCc
Q psy17092 83 PIKMLHKYHTKHTLISGQG----------PMEEIAKRLGFN 113 (183)
Q Consensus 83 a~~~l~~~~~k~v~viG~~----------~~~~~l~~~G~~ 113 (183)
++.++.+...+++.++|.. ++++.+++.|..
T Consensus 100 ~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~ 140 (265)
T cd01543 100 AAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYE 140 (265)
T ss_pred HHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCc
Confidence 3445555555777777743 334455666654
No 338
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=24.24 E-value=2.3e+02 Score=24.40 Aligned_cols=81 Identities=22% Similarity=0.134 Sum_probs=49.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHH-----HHH-HhcCC--CeEEEEcChhHH-HHHHHCC--Ccee
Q psy17092 47 VFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPI-----KML-HKYHT--KHTLISGQGPME-EIAKRLG--FNKV 115 (183)
Q Consensus 47 ~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~-----~~l-~~~~~--k~v~viG~~~~~-~~l~~~G--~~~~ 115 (183)
++||+.+-.+. +++-|.-.+|--+..++|+++...- ..+ .+|.. .+..+||.+.-. +.++..+ |=.+
T Consensus 179 vLVTs~qLVPa--LaKcLLy~L~~~f~ieNIYSa~kvGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw~I 256 (274)
T TIGR01658 179 VLVTSGQLIPS--LAKCLLFRLDTIFRIENVYSSIKVGKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFVKI 256 (274)
T ss_pred EEEEcCccHHH--HHHHHHhccCCccccccccchhhcchHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeEEe
Confidence 78887665544 4555542344457889999986532 323 45654 455677876554 3455565 4445
Q ss_pred eCHHHHHhhcCCCc
Q psy17092 116 VTVDSIRNAHPLLD 129 (183)
Q Consensus 116 ~t~~~l~~a~p~l~ 129 (183)
-+-.++...+|.++
T Consensus 257 ~~h~Dl~~l~~aL~ 270 (274)
T TIGR01658 257 DLHPDSSHRFPGLT 270 (274)
T ss_pred ecCCCHHHhCccCC
Confidence 56667777777775
No 339
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=24.23 E-value=3.6e+02 Score=21.32 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCeEEEEcChhHHHHHHHCCC
Q psy17092 83 PIKMLHKYHTKHTLISGQGPMEEIAKRLGF 112 (183)
Q Consensus 83 a~~~l~~~~~k~v~viG~~~~~~~l~~~G~ 112 (183)
+...|++...+++++.|.+.+...+-+.|+
T Consensus 133 ~l~~L~~~g~~~llveGG~~L~~~fl~~~L 162 (216)
T TIGR00227 133 LMEILYEEGINSVMVEGGGTLNGSLLKEGL 162 (216)
T ss_pred HHHHHHHcCCCEEEEeeCHHHHHHHHHCCC
Confidence 334555556689999999999988888884
No 340
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=24.20 E-value=1.2e+02 Score=23.44 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHhcCCCccccEEEEeCCCCCC
Q psy17092 25 PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL 56 (183)
Q Consensus 25 pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~ 56 (183)
+...+++ +.+++.| .+++.+|+++..+
T Consensus 115 ~~~i~~~-~~ak~~G----a~vI~IT~~~~s~ 141 (177)
T cd05006 115 PNVLKAL-EAAKERG----MKTIALTGRDGGK 141 (177)
T ss_pred HHHHHHH-HHHHHCC----CEEEEEeCCCCCc
Confidence 4455555 6666655 6667777665443
No 341
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=24.17 E-value=3.3e+02 Score=21.58 Aligned_cols=12 Identities=0% Similarity=-0.291 Sum_probs=6.1
Q ss_pred ccCCCCCCCCcc
Q psy17092 160 RSLDHKAKIGRS 171 (183)
Q Consensus 160 ~~l~~~~~~~~~ 171 (183)
.+++--|.++.+
T Consensus 205 ~di~v~g~d~~~ 216 (268)
T cd06270 205 QDVSIIGFDDVL 216 (268)
T ss_pred CceeEEEecCch
Confidence 345555555543
No 342
>PRK14129 heat shock protein HspQ; Provisional
Probab=24.16 E-value=45 Score=24.66 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=14.3
Q ss_pred CceEEEEecCCeeeeCCc
Q psy17092 5 PSFGLIFDIDGVLVRGKQ 22 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~ 22 (183)
+|.|++||+|-+.-..+.
T Consensus 18 ~yrGVV~DVDP~fs~~e~ 35 (105)
T PRK14129 18 GYLGVVVDIDPEYSLEEP 35 (105)
T ss_pred CCCeEEEeeCCCcCCCch
Confidence 578999999997765554
No 343
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=24.10 E-value=3.1e+02 Score=25.70 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=34.0
Q ss_pred EEEEecCCeeeeCC-ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCC-CH--HHHHHHHHHHhCCC
Q psy17092 8 GLIFDIDGVLVRGK-QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS-LA--ADKAKQLTEWLGVE 71 (183)
Q Consensus 8 ~iifDiDGVL~~g~-~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~-~~--~~~~~~L~~~lG~~ 71 (183)
+++.=.||++-.=. .-+-.|-+-+++.|++.+ +||+++-|.... +. .+.++.+.+.++++
T Consensus 148 givVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~----kPfiivlN~~dp~~~et~~l~~~l~eky~vp 211 (492)
T TIGR02836 148 GVVVTTDGTITDIPREDYVEAEERVIEELKELN----KPFIILLNSTHPYHPETEALRQELEEKYDVP 211 (492)
T ss_pred EEEEEcCCCccccccccchHHHHHHHHHHHhcC----CCEEEEEECcCCCCchhHHHHHHHHHHhCCc
Confidence 34444466554211 122333333348888877 899999987662 22 23345666667765
No 344
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.65 E-value=1.7e+02 Score=25.02 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=30.8
Q ss_pred CceEEEEecC-----CeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeC
Q psy17092 5 PSFGLIFDID-----GVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTN 51 (183)
Q Consensus 5 ~~~~iifDiD-----GVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTN 51 (183)
+.+.|.+|+| |...-..+.+|+-.+.+ +.|++.| +++++..+
T Consensus 45 P~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi-~~l~~~G----~k~~l~i~ 91 (303)
T cd06592 45 PNGQIEIDDNWETCYGDFDFDPTKFPDPKGMI-DQLHDLG----FRVTLWVH 91 (303)
T ss_pred CCCeEEeCCCccccCCccccChhhCCCHHHHH-HHHHHCC----CeEEEEEC
Confidence 4678999975 55555566799988888 9999988 56544444
No 345
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.44 E-value=1.4e+02 Score=21.19 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHhcCCCccccEEEEeCCCCCC
Q psy17092 25 PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL 56 (183)
Q Consensus 25 pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~ 56 (183)
....+.+ +.+++.| .+++.+|++...+
T Consensus 67 ~~~~~~~-~~ak~~g----~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 67 RELIELL-RFAKERG----APVILITSNSESP 93 (131)
T ss_dssp HHHHHHH-HHHHHTT----SEEEEEESSTTSH
T ss_pred hhhhhhh-HHHHhcC----CeEEEEeCCCCCc
Confidence 4566666 7777776 7889999877654
No 346
>KOG3120|consensus
Probab=23.34 E-value=2.1e+02 Score=24.37 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=24.9
Q ss_pred ccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCC
Q psy17092 22 QVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGV 70 (183)
Q Consensus 22 ~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~ 70 (183)
+..||..++| +.+.+.| . ..++++|...+.-.++. | +++|+
T Consensus 84 P~~Pgmv~li-k~~ak~g-~--~eliIVSDaNsfFIe~~---L-ea~~~ 124 (256)
T KOG3120|consen 84 PIVPGMVRLI-KSAAKLG-C--FELIIVSDANSFFIEEI---L-EAAGI 124 (256)
T ss_pred CCCccHHHHH-HHHHhCC-C--ceEEEEecCchhHHHHH---H-HHccH
Confidence 4567777777 7777665 2 46678887655543332 3 35665
No 347
>COG3057 SeqA Negative regulator of replication initiationR [DNA replication, recombination, and repair]
Probab=23.23 E-value=1.2e+02 Score=24.09 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=19.9
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHhCCCC
Q psy17092 44 VPTVFVTNAGNSLAADKAKQLTEWLGVEV 72 (183)
Q Consensus 44 i~~~~lTNns~~~~~~~~~~L~~~lG~~~ 72 (183)
-|+.++||+.+-.....++..-..|+++.
T Consensus 143 TPyWVITNtNtgRK~~M~e~~MqsM~fP~ 171 (181)
T COG3057 143 TPYWVITNTNTGRKCSMIEHIMQSMQFPA 171 (181)
T ss_pred CCeEEEecCCchhHHHHHHHHHHHccCCH
Confidence 57999998755444455666556788874
No 348
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.19 E-value=1.5e+02 Score=21.08 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCH
Q psy17092 25 PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLA 57 (183)
Q Consensus 25 pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~ 57 (183)
+...+++ +.+++.| .+++.+|++..-+-
T Consensus 60 ~e~~~~~-~~a~~~g----~~vi~iT~~~~s~l 87 (126)
T cd05008 60 ADTLAAL-RLAKEKG----AKTVAITNVVGSTL 87 (126)
T ss_pred HHHHHHH-HHHHHcC----CeEEEEECCCCChH
Confidence 3466666 7777776 78899998865543
No 349
>KOG1387|consensus
Probab=23.15 E-value=2.3e+02 Score=25.83 Aligned_cols=35 Identities=9% Similarity=0.215 Sum_probs=28.9
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceec
Q psy17092 45 PTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVM 79 (183)
Q Consensus 45 ~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~t 79 (183)
.+++-|.....|++++..+....+++++++++|.-
T Consensus 78 ~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~F 112 (465)
T KOG1387|consen 78 VIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFF 112 (465)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhcCceecccceEE
Confidence 35666766688999999999889999999998853
No 350
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=22.93 E-value=1.6e+02 Score=24.10 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=28.4
Q ss_pred CCeEEEEcChhHHHHHHHCCCceeeCHHHHHhhc
Q psy17092 92 TKHTLISGQGPMEEIAKRLGFNKVVTVDSIRNAH 125 (183)
Q Consensus 92 ~k~v~viG~~~~~~~l~~~G~~~~~t~~~l~~a~ 125 (183)
..+|.|++.+...++++++|.+.+++.+++..-.
T Consensus 58 ~~~V~vf~~~~~~~~Ak~aGa~~v~~~e~L~~i~ 91 (215)
T PRK04203 58 EVKIAVIAKGELALQAKEAGADYVITREELEELG 91 (215)
T ss_pred CcEEEEEcChHhHHHHHHcCCCEEeCHHHHHHHh
Confidence 4688999988888888999999888998887654
No 351
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=22.90 E-value=3.2e+02 Score=24.95 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=40.4
Q ss_pred CccccEEEEeCC-CCCCHHHHHHHHHHHhCCCCCccceeccHH-HHH-HHH----hcCCCeEEEEcCh----hHHHHHHH
Q psy17092 41 RFVVPTVFVTNA-GNSLAADKAKQLTEWLGVEVEEDQVVMSHT-PIK-MLH----KYHTKHTLISGQG----PMEEIAKR 109 (183)
Q Consensus 41 k~~i~~~~lTNn-s~~~~~~~~~~L~~~lG~~~~~~~I~ts~~-a~~-~l~----~~~~k~v~viG~~----~~~~~l~~ 109 (183)
+|++|++.+..- +-.........|.+.+|.++. +.+..... ... ++. ...++++.+.|.+ ++.+.+.+
T Consensus 255 ~~giP~~~~~~piGi~~T~~fl~~l~~~~g~~~~-e~i~~er~~~~~~~~d~~~~~l~Gkrvai~~~~~~~~~l~~~l~e 333 (461)
T TIGR02931 255 KFDVPAIIGPTPIGIRNTDTFLQNLKKMTGKPIP-ESLVKERGIAIDAIADLTHMFLADKRVAIYGNPDLVIGLAEFCLD 333 (461)
T ss_pred HhCCCeeccCCCcchHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHhhhhHHhCCCeEEEEeCHHHHHHHHHHHHH
Confidence 355887655322 223334456667777787653 22222111 111 111 2468999988875 45566678
Q ss_pred CCCcee
Q psy17092 110 LGFNKV 115 (183)
Q Consensus 110 ~G~~~~ 115 (183)
.|+...
T Consensus 334 lGm~~~ 339 (461)
T TIGR02931 334 LEMKPV 339 (461)
T ss_pred CCCEEE
Confidence 898764
No 352
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=22.65 E-value=3.1e+02 Score=19.92 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=18.4
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHH
Q psy17092 44 VPTVFVTNAGNSLAADKAKQLTE 66 (183)
Q Consensus 44 i~~~~lTNns~~~~~~~~~~L~~ 66 (183)
+|++-+.-....+..++.+.|.+
T Consensus 102 iplir~~~~~~~~~~~l~~~l~~ 124 (126)
T PF10881_consen 102 IPLIRISPKDSYSVEELRRDLRE 124 (126)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHH
Confidence 99998877778888887777764
No 353
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=22.58 E-value=3.8e+02 Score=20.90 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=28.8
Q ss_pred CccCccHHHHHHHHHHhcCCCccccEEEEe-CC-------------CCCCHHHHHHHHHHHhCCC
Q psy17092 21 KQVLPGVQDTFMNKLTNSGGRFVVPTVFVT-NA-------------GNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 21 ~~~ipgA~e~l~~~l~~~ggk~~i~~~~lT-Nn-------------s~~~~~~~~~~L~~~lG~~ 71 (183)
+.+..|-...+ +++.+.+.+.+...+++| +. .-.+.++..+.++ .+|++
T Consensus 9 DgvH~GH~~ll-~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~-~l~vd 71 (180)
T cd02064 9 DGVHLGHQALI-KTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLE-SLGVD 71 (180)
T ss_pred CccCHHHHHHH-HHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHH-HcCCC
Confidence 45667777777 777765322224555554 21 1245677788887 68865
No 354
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=22.40 E-value=5.8e+02 Score=23.68 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=53.2
Q ss_pred CCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC----------------C-Cccc
Q psy17092 14 DGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE----------------V-EEDQ 76 (183)
Q Consensus 14 DGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~----------------~-~~~~ 76 (183)
|.+++-|-..+-. ... +.|++.| .+++.+.+|..+ +++++ ..|.+ + +.+-
T Consensus 418 ~hiiI~G~G~~G~--~la-~~L~~~g----~~vvvId~d~~~-----~~~~~-~~g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGRVGS--LLG-EKLLAAG----IPLVVIETSRTR-----VDELR-ERGIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCChHHH--HHH-HHHHHCC----CCEEEEECCHHH-----HHHHH-HCCCeEEEcCCCCHHHHHhcCccccCE
Confidence 6667666554333 334 8888776 789898876432 44454 35542 1 1222
Q ss_pred ee-cc-H--HHH---HHH-HhcCCCeEEEEcC-hhHHHHHHHCCCceeeCHHHHH
Q psy17092 77 VV-MS-H--TPI---KML-HKYHTKHTLISGQ-GPMEEIAKRLGFNKVVTVDSIR 122 (183)
Q Consensus 77 I~-ts-~--~a~---~~l-~~~~~k~v~viG~-~~~~~~l~~~G~~~~~t~~~l~ 122 (183)
++ +. . ... ... +.+++.++++-.. ..-.+.++..|.|.+++.++..
T Consensus 485 viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~ 539 (558)
T PRK10669 485 LLLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGEREI 539 (558)
T ss_pred EEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHH
Confidence 32 21 1 111 111 2345556665554 4555667889999999877653
No 355
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=22.38 E-value=1.4e+02 Score=27.91 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=39.2
Q ss_pred ceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCC--CCccceecc
Q psy17092 6 SFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVE--VEEDQVVMS 80 (183)
Q Consensus 6 ~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~--~~~~~I~ts 80 (183)
.+.+++|+.+|-+-+...+..-.+.. +.++++| +.+ .++|-. ....+.+. ..|+. +.+++++.+
T Consensus 494 ~~~vIlD~~~V~~iDsSg~~~L~~l~-~~l~~~g----~~l-~l~~~~----~~v~~~l~-~~gl~~~~~~~~~f~s 559 (563)
T TIGR00815 494 LQVVILDMSAVPHLDTSGIHALEELR-KELKARG----IQL-LLANPN----KAVRSTLK-RGGLVELIGEEHFFPS 559 (563)
T ss_pred ceEEEEECCCCCcchHHHHHHHHHHH-HHHHHcC----CEE-EEecCC----hHHHHHHH-HCCchhhcCCcceeCC
Confidence 48999999999887777555555555 6666666 444 444432 22445555 57764 344556654
No 356
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=22.34 E-value=5.5e+02 Score=25.78 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=62.1
Q ss_pred eCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccc--eeccHH--------------
Q psy17092 19 RGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQ--VVMSHT-------------- 82 (183)
Q Consensus 19 ~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~--I~ts~~-------------- 82 (183)
--++|=+++.+++ +.|++.| +.+..+|.-...|. ..+.+.+|+..+.+. +++...
T Consensus 544 ~~Dppr~~v~~aI-~~l~~AG----I~v~MiTGD~~~TA----~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~ 614 (917)
T COG0474 544 IEDPPREDVKEAI-EELREAG----IKVWMITGDHVETA----IAIAKECGIEAEAESALVIDGAELDALSDEELAELVE 614 (917)
T ss_pred ccCCCCccHHHHH-HHHHHCC----CcEEEECCCCHHHH----HHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhh
Confidence 4478889999999 9999988 99999986554444 445556887655432 444322
Q ss_pred ---------HHH---HHH--hcCCCeEEEEcCh-hHHHHHH--HCCCceeeCHHHHHhhcCCC
Q psy17092 83 ---------PIK---MLH--KYHTKHTLISGQG-PMEEIAK--RLGFNKVVTVDSIRNAHPLL 128 (183)
Q Consensus 83 ---------a~~---~l~--~~~~k~v~viG~~-~~~~~l~--~~G~~~~~t~~~l~~a~p~l 128 (183)
|.. +++ +..++.|.+.|.| ...-.++ ++|+-...+..|..+..-.+
T Consensus 615 ~~~VfARvsP~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~~Gtdaak~Aadi 677 (917)
T COG0474 615 ELSVFARVSPEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGEGTDAAKEAADI 677 (917)
T ss_pred hCcEEEEcCHHHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEecccHHHHHHhhcce
Confidence 111 111 2246778888865 2222233 56766666666766666444
No 357
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=22.18 E-value=2.3e+02 Score=25.61 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=44.9
Q ss_pred CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCC---------CHHHHHHHHHHHhCCCCCc-cceeccHHHHHHHHhc
Q psy17092 21 KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS---------LAADKAKQLTEWLGVEVEE-DQVVMSHTPIKMLHKY 90 (183)
Q Consensus 21 ~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~---------~~~~~~~~L~~~lG~~~~~-~~I~ts~~a~~~l~~~ 90 (183)
+.-|..+..+| ++|.++| -+++++|--+.. |-+.+++.|.+.+|.++.. ++++ ...+-..+...
T Consensus 30 d~RI~~~lpTI-~~l~~~g----akvVl~sH~GRPk~~~~~~~~SL~~va~~L~~~L~~~V~f~~d~~-g~~~~~~i~~l 103 (384)
T PF00162_consen 30 DTRIRAALPTI-KYLLEKG----AKVVLMSHLGRPKGKGYDDFFSLEPVAERLSKLLGKPVKFVDDCI-GEEAEEAIESL 103 (384)
T ss_dssp THHHHHHHHHH-HHHHHTT----EEEEEE---SSTTTSSSTGGG-SHHHHHHHHHHHTSEEEEESTSS-SHHHHHHHHTS
T ss_pred cchHHHHHHHH-HHHHhcC----CeEEEEeccCCcccCCCCcccChHHHHHHHHHHhCCCeeeccccC-CHHHHHHHhcc
Confidence 34466788888 9999988 468888875443 2345678888889887632 2222 12222355556
Q ss_pred CCCeEEEEcC
Q psy17092 91 HTKHTLISGQ 100 (183)
Q Consensus 91 ~~k~v~viG~ 100 (183)
....|+++-+
T Consensus 104 ~~G~IllLEN 113 (384)
T PF00162_consen 104 KPGEILLLEN 113 (384)
T ss_dssp STTEEEEESS
T ss_pred CCCCEEEEee
Confidence 6677777754
No 358
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=22.15 E-value=2e+02 Score=25.60 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHH
Q psy17092 27 VQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLT 65 (183)
Q Consensus 27 A~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~ 65 (183)
+.|.+ +.|.+.. ++|||-.-.--.+++..|.
T Consensus 126 S~E~i-~Ll~eAD-------IVVTNPPFSLFrEyv~~Li 156 (336)
T PF13651_consen 126 SDECI-ELLKEAD-------IVVTNPPFSLFREYVAQLI 156 (336)
T ss_pred cHHHH-HHHhcCC-------EEEeCCCcHHHHHHHHHHH
Confidence 45666 6665544 6777755444555666665
No 359
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.12 E-value=1.2e+02 Score=22.03 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCH
Q psy17092 25 PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLA 57 (183)
Q Consensus 25 pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~ 57 (183)
+...+++ +.+++.| .|++.+|++..-+-
T Consensus 61 ~~~~~~~-~~a~~~g----~~vi~iT~~~~s~l 88 (120)
T cd05710 61 KETVAAA-KFAKEKG----ATVIGLTDDEDSPL 88 (120)
T ss_pred hHHHHHH-HHHHHcC----CeEEEEECCCCCcH
Confidence 4566666 7777776 78899998766553
No 360
>COG2710 NifD Nitrogenase molybdenum-iron protein, alpha and beta chains [Energy production and conversion]
Probab=22.11 E-value=4.5e+02 Score=24.00 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=47.1
Q ss_pred ccccEEEE-eCCCCCCHHHHHHHHHHHhCC-CCCccceeccHHHH-----H-HHHhcCCCeEEEEcChh----HHHHHHH
Q psy17092 42 FVVPTVFV-TNAGNSLAADKAKQLTEWLGV-EVEEDQVVMSHTPI-----K-MLHKYHTKHTLISGQGP----MEEIAKR 109 (183)
Q Consensus 42 ~~i~~~~l-TNns~~~~~~~~~~L~~~lG~-~~~~~~I~ts~~a~-----~-~l~~~~~k~v~viG~~~----~~~~l~~ 109 (183)
+++|++.. +.-+.+........+.+.+|. ...++.++-..... . +..+.++|++.+.|++. ......+
T Consensus 255 ~gip~~~~~~~~G~~~t~~~l~~la~~~g~~~~~~e~v~~e~~~l~d~~~d~~~~~l~gk~v~I~~~~~~~~~~~~~~~e 334 (456)
T COG2710 255 FGIPWIEVPSPLGIENTDRFLRNLAKLLGKIEEIPEEVIEERGALIDAELDRYRPRLSGKKVAIYGGPDAIHLLAAFEEE 334 (456)
T ss_pred hCCCeEecCCCcCchHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcchHHHHHHHHH
Confidence 56998888 655665677777888888884 33455555544322 1 22346789999888752 2333456
Q ss_pred CCCcee
Q psy17092 110 LGFNKV 115 (183)
Q Consensus 110 ~G~~~~ 115 (183)
.|+..+
T Consensus 335 lgm~~v 340 (456)
T COG2710 335 LGMEPV 340 (456)
T ss_pred cCCEEE
Confidence 888754
No 361
>PLN03034 phosphoglycerate kinase; Provisional
Probab=22.06 E-value=4.1e+02 Score=24.88 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=35.4
Q ss_pred CccCccHHHHHHHHHHhcCCCccccEEEEeCCC-------CCCHHHHHHHHHHHhCCCCC
Q psy17092 21 KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAG-------NSLAADKAKQLTEWLGVEVE 73 (183)
Q Consensus 21 ~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns-------~~~~~~~~~~L~~~lG~~~~ 73 (183)
++-|..+..+| ++|.++| -+++++|--+ ..+-+..++.|.+.+|.++.
T Consensus 114 d~RI~a~lpTI-~~L~~~g----akvVl~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~ 168 (481)
T PLN03034 114 DTRIRAAIPTI-KYLISNG----AKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVV 168 (481)
T ss_pred hHhHHHHHHHH-HHHHHCC----CeEEEEEecCCCCCCCcccCHHHHHHHHHHHhCCCeE
Confidence 44466677788 9998888 4577777654 34667788999999998864
No 362
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=21.99 E-value=4e+02 Score=24.61 Aligned_cols=68 Identities=22% Similarity=0.234 Sum_probs=42.4
Q ss_pred ceEEEEecCCeeeeC----------CccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCcc
Q psy17092 6 SFGLIFDIDGVLVRG----------KQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEED 75 (183)
Q Consensus 6 ~~~iifDiDGVL~~g----------~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~ 75 (183)
..+.++|.||--|.. ....|...+++ +...+.| +.-...+..+-++++.+.+.++. ++.=
T Consensus 43 ~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av-~~~l~~G--------~~fg~Pte~Ei~~Aell~~~~p~-~e~v 112 (432)
T COG0001 43 KGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAV-QEQLERG--------LSFGAPTELEVELAELLIERVPS-IEKV 112 (432)
T ss_pred cCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHH-HHHHHhc--------CCCCCCCHHHHHHHHHHHHhcCc-ccEE
Confidence 457899999977642 13356677777 5555556 33344566666777777754332 3445
Q ss_pred ceeccHHH
Q psy17092 76 QVVMSHTP 83 (183)
Q Consensus 76 ~I~ts~~a 83 (183)
++++|++-
T Consensus 113 rfvnSGTE 120 (432)
T COG0001 113 RFVNSGTE 120 (432)
T ss_pred EEecchhH
Confidence 77888753
No 363
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=21.99 E-value=5e+02 Score=23.60 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=47.2
Q ss_pred CCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCC--------CCCHHHHHHHHHHHhCCCCC-ccceeccHHHH
Q psy17092 14 DGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAG--------NSLAADKAKQLTEWLGVEVE-EDQVVMSHTPI 84 (183)
Q Consensus 14 DGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns--------~~~~~~~~~~L~~~lG~~~~-~~~I~ts~~a~ 84 (183)
||. +....-|..+..+| ++|.++| -+++++|--+ ..|-+..++.|.+.+|.++. .++++. ..+.
T Consensus 23 ~g~-I~dd~RI~a~lpTI-~~l~~~g----akvvl~SHlGRP~g~~~~~~SL~~va~~L~~lL~~~V~f~~d~~g-~~~~ 95 (397)
T cd00318 23 DGK-ITDDTRIRAALPTI-KYLLEQG----AKVVLLSHLGRPKGEPNEKYSLAPVAKALSELLGQPVTFANDCVG-PEAE 95 (397)
T ss_pred CCe-ECChHHHHHHHHHH-HHHHHCC----CeEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHCCCcEECCCCCC-HHHH
Confidence 453 33455677788888 9999887 4577777644 24566778899999998764 233432 2222
Q ss_pred HHHHhcCCCeEEEE
Q psy17092 85 KMLHKYHTKHTLIS 98 (183)
Q Consensus 85 ~~l~~~~~k~v~vi 98 (183)
..+.......|+++
T Consensus 96 ~~i~~l~~GeIlLL 109 (397)
T cd00318 96 EAVEALKPGDVLLL 109 (397)
T ss_pred HHHhcCCCCcEEEE
Confidence 23333344444444
No 364
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=21.93 E-value=3.2e+02 Score=21.72 Aligned_cols=68 Identities=26% Similarity=0.275 Sum_probs=41.0
Q ss_pred eEEEEecCCe--eeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCC--CCCHHHHHHHHHHHhCCCCCccceeccH
Q psy17092 7 FGLIFDIDGV--LVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAG--NSLAADKAKQLTEWLGVEVEEDQVVMSH 81 (183)
Q Consensus 7 ~~iifDiDGV--L~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns--~~~~~~~~~~L~~~lG~~~~~~~I~ts~ 81 (183)
.+.+-|++-- +++.-..+|+|.+++ +.|.+. ..++++|-.. ..+-++..+-|.+.+-+ +++.+++-++
T Consensus 51 ~g~i~~il~ep~fFRnL~V~p~aq~v~-keLt~~-----y~vYivtaamdhp~s~~dK~eWl~E~FPF-i~~qn~vfCg 122 (180)
T COG4502 51 CGKIYDILKEPHFFRNLGVQPFAQTVL-KELTSI-----YNVYIVTAAMDHPKSCEDKGEWLKEKFPF-ISYQNIVFCG 122 (180)
T ss_pred CCeeeeeccCcchhhhcCccccHHHHH-HHHHhh-----heEEEEEeccCCchhHHHHHHHHHHHCCC-CChhhEEEec
Confidence 4455555544 556667899999999 999864 5778888642 23333333334432322 4666776654
No 365
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=21.79 E-value=1.1e+02 Score=27.73 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=23.1
Q ss_pred EecCCeeeeCCccCcc-HHHHH-H-HHHHhcCCCccccEEEE-eCCCC
Q psy17092 11 FDIDGVLVRGKQVLPG-VQDTF-M-NKLTNSGGRFVVPTVFV-TNAGN 54 (183)
Q Consensus 11 fDiDGVL~~g~~~ipg-A~e~l-~-~~l~~~ggk~~i~~~~l-TNns~ 54 (183)
+.+||||++..+--.. +.+.. + +.+++.| +|++.+ |..+.
T Consensus 360 ~~vDGVI~~~~~~C~~~s~e~~~ik~~l~~~G----IP~L~ietD~~d 403 (430)
T TIGR03191 360 WNVDGCMLHLNRGCEGLSIGIMENRLAIAKAG----IPIMTFEGNMGD 403 (430)
T ss_pred HCCCEEEEcCCCCCccchHhHHHHHHHHHHcC----CCEEEEECCCCC
Confidence 5689999987654221 22222 1 3455555 898777 66555
No 366
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=21.79 E-value=3.3e+02 Score=20.93 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=30.0
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHH-HHHHHhcCCCeEEEEcC
Q psy17092 45 PTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTP-IKMLHKYHTKHTLISGQ 100 (183)
Q Consensus 45 ~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a-~~~l~~~~~k~v~viG~ 100 (183)
..+|+-. |.+...+++.|.+..+ =.|+|...+ +..|.++++-.++++|.
T Consensus 21 ~~Ifld~--GtT~~~la~~L~~~~~-----ltVvTnsl~ia~~l~~~~~~~vi~~GG 70 (161)
T PF00455_consen 21 DTIFLDS--GTTTLELAKYLPDKKN-----LTVVTNSLPIANELSENPNIEVILLGG 70 (161)
T ss_pred CEEEEEC--chHHHHHHHHhhcCCc-----eEEEECCHHHHHHHHhcCceEEEEeCC
Confidence 4677754 4455666776664222 257776654 44677766677888876
No 367
>KOG2832|consensus
Probab=21.72 E-value=1.9e+02 Score=26.28 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=40.6
Q ss_pred eEEEEecCCeeeeCCc---------cCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHH
Q psy17092 7 FGLIFDIDGVLVRGKQ---------VLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLT 65 (183)
Q Consensus 7 ~~iifDiDGVL~~g~~---------~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~ 65 (183)
-++++||.+||++.+. -=||+..++ ..+- ++ .++++.|...+++..-+++.|.
T Consensus 190 yTLVleledvLVhpdws~~tGwRf~kRPgvD~FL-~~~a----~~-yEIVi~sse~gmt~~pl~d~lD 251 (393)
T KOG2832|consen 190 YTLVLELEDVLVHPDWSYKTGWRFKKRPGVDYFL-GHLA----KY-YEIVVYSSEQGMTVFPLLDALD 251 (393)
T ss_pred ceEEEEeeeeEeccchhhhcCceeccCchHHHHH-Hhhc----cc-ceEEEEecCCccchhhhHhhcC
Confidence 5899999999998653 357887777 6654 22 6899999999998876666665
No 368
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=21.56 E-value=1.6e+02 Score=20.82 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=18.4
Q ss_pred ccHHHHHHHHHHhcCCCccccEEEEeCCCCCCH
Q psy17092 25 PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLA 57 (183)
Q Consensus 25 pgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~ 57 (183)
+...+++ +.+++.| .+++.+|++...+.
T Consensus 74 ~~~~~~~-~~a~~~g----~~iv~iT~~~~~~l 101 (139)
T cd05013 74 KETVEAA-EIAKERG----AKVIAITDSANSPL 101 (139)
T ss_pred HHHHHHH-HHHHHcC----CeEEEEcCCCCChh
Confidence 3455555 7777666 78888888766543
No 369
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=21.51 E-value=2.3e+02 Score=23.73 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=31.0
Q ss_pred cCCeeeeCCccCccH---HHHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHH
Q psy17092 13 IDGVLVRGKQVLPGV---QDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLT 65 (183)
Q Consensus 13 iDGVL~~g~~~ipgA---~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~ 65 (183)
..||.+.|++|+... .+++ +++++.| +++.+.||+.. +.+. +.++.
T Consensus 126 ~~~V~~sGGEPll~~~~l~~l~-~~~k~~g----~~~~i~TnG~~-~~~~-~~~ll 174 (295)
T TIGR02494 126 GGGVTLSGGEPLLQPEFALALL-QACHERG----IHTAVETSGFT-PWET-IEKVL 174 (295)
T ss_pred CCcEEeeCcchhchHHHHHHHH-HHHHHcC----CcEeeeCCCCC-CHHH-HHHHH
Confidence 468889998876432 3566 8888776 78999999764 3333 33443
No 370
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=21.43 E-value=4.6e+02 Score=22.56 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=37.3
Q ss_pred EEEecCCeeeeCCccCccHH-HHHHHHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHHHH
Q psy17092 9 LIFDIDGVLVRGKQVLPGVQ-DTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIKML 87 (183)
Q Consensus 9 iifDiDGVL~~g~~~ipgA~-e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~~l 87 (183)
++.|-|-+|.++.. ++. .+| ..+.+.|.+ +.++++=......-...++.|. ..|+++ .+++-..+...+
T Consensus 112 ~i~~g~~ILT~~~S---~tv~~~l-~~a~~~~~~--f~V~v~EsrP~~~G~~~a~~L~-~~gI~v---tlI~Dsa~~~~m 181 (301)
T TIGR00511 112 RIRDGDVVMTHCNS---EAALSVI-KTAFEQGKD--IEVIATETRPRKQGHITAKELR-DYGIPV---TLIVDSAVRYFM 181 (301)
T ss_pred HcCCCCEEEEECCc---HHHHHHH-HHHHHcCCc--EEEEEecCCCcchHHHHHHHHH-HCCCCE---EEEehhHHHHHH
Confidence 34566667777755 433 344 666666532 3444333222223355688888 599886 344444444444
Q ss_pred H
Q psy17092 88 H 88 (183)
Q Consensus 88 ~ 88 (183)
.
T Consensus 182 ~ 182 (301)
T TIGR00511 182 K 182 (301)
T ss_pred H
Confidence 3
No 371
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=21.37 E-value=1.7e+02 Score=25.30 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=32.9
Q ss_pred ceEEEEecCCeee------eCCccCccHHHHHHHHHHhcCCCccccEEE---EeCC-CCCCHHHHHHHHHHHhCCC
Q psy17092 6 SFGLIFDIDGVLV------RGKQVLPGVQDTFMNKLTNSGGRFVVPTVF---VTNA-GNSLAADKAKQLTEWLGVE 71 (183)
Q Consensus 6 ~~~iifDiDGVL~------~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~---lTNn-s~~~~~~~~~~L~~~lG~~ 71 (183)
...|-+.+||.=- .+...+..+.++| +.+++.| +++.+ ++++ .-....++++.+. .+|++
T Consensus 124 ~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I-~~l~~~G----~~v~v~~tv~~~~n~~ei~~~~~~~~-~lGv~ 193 (318)
T TIGR03470 124 YLTFSVHLDGLREHHDASVCREGVFDRAVEAI-REAKARG----FRVTTNTTLFNDTDPEEVAEFFDYLT-DLGVD 193 (318)
T ss_pred CcEEEEEEecCchhhchhhcCCCcHHHHHHHH-HHHHHCC----CcEEEEEEEeCCCCHHHHHHHHHHHH-HcCCC
Confidence 4678889999521 1123345577777 8888776 56533 2232 2222334445554 57774
No 372
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.37 E-value=4.1e+02 Score=20.87 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=9.1
Q ss_pred HHHHHHhcCCCeEEEEc
Q psy17092 83 PIKMLHKYHTKHTLISG 99 (183)
Q Consensus 83 a~~~l~~~~~k~v~viG 99 (183)
++.++.+.+.+++.+++
T Consensus 107 ~~~~l~~~g~~~i~~i~ 123 (264)
T cd01574 107 ATEHLLELGHRTIAHVA 123 (264)
T ss_pred HHHHHHHCCCCEEEEEe
Confidence 34455444556666664
No 373
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.36 E-value=3.6e+02 Score=21.13 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=8.3
Q ss_pred HHHHhcCCCeEEEEc
Q psy17092 85 KMLHKYHTKHTLISG 99 (183)
Q Consensus 85 ~~l~~~~~k~v~viG 99 (183)
.++.+...+++.+++
T Consensus 108 ~~l~~~g~~~i~~i~ 122 (266)
T cd06278 108 ELLLAKGCRRIAFIG 122 (266)
T ss_pred HHHHHCCCceEEEEc
Confidence 444444446776665
No 374
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=21.27 E-value=2e+02 Score=23.90 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=39.0
Q ss_pred EEecCCeeeeCCcc--CccHHHHHHHHHHhcCCCccccEEEEeCCCCCC-----------HHHHHHHHHHHhCCCCCccc
Q psy17092 10 IFDIDGVLVRGKQV--LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL-----------AADKAKQLTEWLGVEVEEDQ 76 (183)
Q Consensus 10 ifDiDGVL~~g~~~--ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~-----------~~~~~~~L~~~lG~~~~~~~ 76 (183)
==|+|..++-+.+. -+...++| +.....|| +++++.+..... ...+-..|. .+|+.+.++-
T Consensus 195 P~~~d~Lvi~~P~~~ls~~e~~~l-~~yl~~GG----~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~-~~Gi~~~~~~ 268 (271)
T PF09822_consen 195 PDDADVLVIAGPKTDLSEEELYAL-DQYLMNGG----KLLILLDPFSVELQGLWAGGAQRDSNLNDLLE-EYGIRINPGL 268 (271)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHH-HHHHHcCC----eEEEEECCcccccccccccccccccCHHHHHH-HcCCEeCCCE
Confidence 35788888876543 55577777 77777785 566666655332 113334454 7999877665
Q ss_pred ee
Q psy17092 77 VV 78 (183)
Q Consensus 77 I~ 78 (183)
|+
T Consensus 269 V~ 270 (271)
T PF09822_consen 269 VV 270 (271)
T ss_pred ec
Confidence 43
No 375
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=21.23 E-value=5.8e+02 Score=23.91 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=46.5
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHhCCCCCccceeccHHHHHHHHhc-CCCeEEEEcChhHHHHHHHCCCceee--CHHH
Q psy17092 44 VPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIKMLHKY-HTKHTLISGQGPMEEIAKRLGFNKVV--TVDS 120 (183)
Q Consensus 44 i~~~~lTNns~~~~~~~~~~L~~~lG~~~~~~~I~ts~~a~~~l~~~-~~k~v~viG~~~~~~~l~~~G~~~~~--t~~~ 120 (183)
-++.+++-.+. +.. ++.+...+|+++..-.+.+...+-..+++. ....-.|||..-..+.++.+|+..++ +.+.
T Consensus 98 ~~ia~vg~~~~-~~~--~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~~~~~~A~~~gl~~ili~s~es 174 (526)
T TIGR02329 98 SSIGVVTHQDT-PPA--LRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAGLITDLAEQAGLHGVFLYSADS 174 (526)
T ss_pred CcEEEEecCcc-cHH--HHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEECChHHHHHHHHcCCceEEEecHHH
Confidence 46777765333 322 456777788887544444444443344322 22345677888888999999988754 4444
Q ss_pred HHhhc
Q psy17092 121 IRNAH 125 (183)
Q Consensus 121 l~~a~ 125 (183)
+..++
T Consensus 175 i~~a~ 179 (526)
T TIGR02329 175 VRQAF 179 (526)
T ss_pred HHHHH
Confidence 44443
No 376
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=21.23 E-value=1.4e+02 Score=26.67 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHH--HHHHHHHHhCCCCCccceeccHHHHHHHH--hcCCCeEEEEcCh
Q psy17092 26 GVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAAD--KAKQLTEWLGVEVEEDQVVMSHTPIKMLH--KYHTKHTLISGQG 101 (183)
Q Consensus 26 gA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~--~~~~L~~~lG~~~~~~~I~ts~~a~~~l~--~~~~k~v~viG~~ 101 (183)
-..+.| ++|+++| +.+.+||--.|...-. ..+.+.+ . ...+|.+.-+...+..+. +..+++|+.||+.
T Consensus 185 Ft~~ll-~~l~~kG----v~~a~vTLHVG~GTF~pV~~e~i~~-H--~mh~E~~~I~~~ta~~i~~ak~~G~RViAVGTT 256 (341)
T PF02547_consen 185 FTEELL-ERLKAKG----VEIAFVTLHVGLGTFRPVRVEDIEE-H--KMHSEYYEIPEETAEAINKAKAEGGRVIAVGTT 256 (341)
T ss_dssp --HHHH-HHHHHHT----EEEEEEEEEECGGGG------------------EEEEE-HHHHHHHHHHHHTT--EEEESHH
T ss_pred CCHHHH-HHHHHCC----CeEEEEEEEeccCcccccCcCcccC-C--CCcceEEEECHHHHHHHHHHHHhCCcEEEEccH
Confidence 356667 9999888 8888888765553221 1233332 2 234555555555555442 4578999999987
Q ss_pred hHHHH
Q psy17092 102 PMEEI 106 (183)
Q Consensus 102 ~~~~~ 106 (183)
..+..
T Consensus 257 ~vRaL 261 (341)
T PF02547_consen 257 VVRAL 261 (341)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 377
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.20 E-value=1.7e+02 Score=22.47 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=22.4
Q ss_pred CccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHH
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAAD 59 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~ 59 (183)
-+...+++ +.+++.| .|++.+|++..-+-..
T Consensus 85 t~~~i~~~-~~ak~~g----~~ii~IT~~~~s~la~ 115 (179)
T TIGR03127 85 TESLVTVA-KKAKEIG----ATVAAITTNPESTLGK 115 (179)
T ss_pred cHHHHHHH-HHHHHCC----CeEEEEECCCCCchHH
Confidence 34466666 7787777 8999999988766443
No 378
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=21.05 E-value=2.1e+02 Score=25.73 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=52.0
Q ss_pred CceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCCCCHHH--HHHHHHHHhCCCCCccceeccHH
Q psy17092 5 PSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAAD--KAKQLTEWLGVEVEEDQVVMSHT 82 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~~~~~~--~~~~L~~~lG~~~~~~~I~ts~~ 82 (183)
.|.+|.-...|-+---.--+.-..+.+ ++|+++| +.+.+||--.|...-. ..+.+.+ . ....|...-+..
T Consensus 186 rYQTVyA~~~GSVAAPTAGLHFT~~ll-~~L~~kG----v~~a~vTLHVG~GTF~PV~~e~i~~-H--~MH~E~~~I~~e 257 (366)
T PRK01424 186 RYQTVYSQIEGSVAAPTAGLHFTKDIL-DKLKAKG----IQTAFLTLHVGAGTFLPVKTENIHE-H--KMHTEYCSITPE 257 (366)
T ss_pred hceeeecCCCCceecCCCcCCCCHHHH-HHHHHCC----CeEEEEEEeecCCCCcCcccccccc-C--CccceEEEECHH
Confidence 355555555554433333345577888 9999988 8999999765543210 0122221 1 223444444444
Q ss_pred HHHHH--HhcCCCeEEEEcChhHH
Q psy17092 83 PIKML--HKYHTKHTLISGQGPME 104 (183)
Q Consensus 83 a~~~l--~~~~~k~v~viG~~~~~ 104 (183)
.+..+ .+..+++|+.||+...+
T Consensus 258 ta~~In~ak~~G~RIiAVGTT~vR 281 (366)
T PRK01424 258 TAEIINKAKQEGRRIIAVGTTTLR 281 (366)
T ss_pred HHHHHHHHHHcCCeEEEEecceee
Confidence 44443 24568899999986443
No 379
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=21.04 E-value=3.3e+02 Score=25.00 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=41.3
Q ss_pred HHHHhcCCCccccEEEEeCCCCCCHHHHHHHHHHHh---CCCCC----ccceeccHH--HHHHH----HhcCCCeEEEEc
Q psy17092 33 NKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWL---GVEVE----EDQVVMSHT--PIKML----HKYHTKHTLISG 99 (183)
Q Consensus 33 ~~l~~~ggk~~i~~~~lTNns~~~~~~~~~~L~~~l---G~~~~----~~~I~ts~~--a~~~l----~~~~~k~v~viG 99 (183)
+.|++ +|++|++..+=.+-.......+.|.+.+ +.+.. .++++.... ....+ ..+.++++.+.+
T Consensus 255 ~~L~e---rfGiP~~~~~p~G~~~T~~~l~~la~~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~vaI~~ 331 (475)
T PRK14478 255 RKMEE---RYGIPFFEGSFYGIEDTSDSLRQIARLLVERGADAELVERTEALIAEEEAKAWAALEPYRPRLEGKRVLLYT 331 (475)
T ss_pred HHHHH---HhCCCEEecCCCcHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 56665 3558986532123333344456666656 22211 122232211 11122 235788998877
Q ss_pred Ch----hHHHHHHHCCCcee
Q psy17092 100 QG----PMEEIAKRLGFNKV 115 (183)
Q Consensus 100 ~~----~~~~~l~~~G~~~~ 115 (183)
.+ ++...+.++|++..
T Consensus 332 ~~~~~~~la~~l~ElGm~v~ 351 (475)
T PRK14478 332 GGVKSWSVVKALQELGMEVV 351 (475)
T ss_pred CCchHHHHHHHHHHCCCEEE
Confidence 64 45566789998764
No 380
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=20.86 E-value=2.2e+02 Score=24.63 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=16.7
Q ss_pred ccEEEEeCCCCCC-HH--HHHHHHHHHhCCCC
Q psy17092 44 VPTVFVTNAGNSL-AA--DKAKQLTEWLGVEV 72 (183)
Q Consensus 44 i~~~~lTNns~~~-~~--~~~~~L~~~lG~~~ 72 (183)
+|+.+++..++.. ++ ++++++.+.+|+++
T Consensus 56 ~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l 87 (301)
T PRK05253 56 LPFPLLHVDTGWKFPEMIEFRDRRAKELGLEL 87 (301)
T ss_pred CCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCE
Confidence 4555555555542 22 35667777788875
No 381
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=20.85 E-value=1.8e+02 Score=23.90 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=27.3
Q ss_pred CCeEEEEcChhHHHHHHHCCCceeeCHHHHHhh
Q psy17092 92 TKHTLISGQGPMEEIAKRLGFNKVVTVDSIRNA 124 (183)
Q Consensus 92 ~k~v~viG~~~~~~~l~~~G~~~~~t~~~l~~a 124 (183)
..+|.|++.+...++++++|.+ +++.+||...
T Consensus 61 ~~~v~V~a~~~~~~~Ak~aGa~-vvg~edL~~~ 92 (216)
T PTZ00029 61 NLKVCVLGDAVHCDEAKKLGLD-FMDIEGLKKF 92 (216)
T ss_pred CcEEEEECCcHHHHHHHHcCCC-EecHHHHHHh
Confidence 4688999999888889999987 7899999763
No 382
>PRK13663 hypothetical protein; Provisional
Probab=20.69 E-value=2.6e+02 Score=26.01 Aligned_cols=95 Identities=20% Similarity=0.348 Sum_probs=52.3
Q ss_pred CCeeeeCCc-cCccHH-HHHHHHHHhcCCCcccc--EEEEeCCCCCCHHHHHHHHHHHhCC---CCCccceeccHH----
Q psy17092 14 DGVLVRGKQ-VLPGVQ-DTFMNKLTNSGGRFVVP--TVFVTNAGNSLAADKAKQLTEWLGV---EVEEDQVVMSHT---- 82 (183)
Q Consensus 14 DGVL~~g~~-~ipgA~-e~l~~~l~~~ggk~~i~--~~~lTNns~~~~~~~~~~L~~~lG~---~~~~~~I~ts~~---- 82 (183)
||+++.|++ .+-||. .+|+++|+...| |+ +.+++...-.+...+-. +.+|- .+..++++.+-+
T Consensus 365 DG~IiTGKtS~LlgasaA~lLNAlK~LA~---I~~~i~Lisp~~iepIq~LKt---~~Lgs~nprLh~dEvLIALSisA~ 438 (493)
T PRK13663 365 DGTIVTGKTSELLGATAAVLLNALKHLAG---IDDEIHLISPEIIEPIQNLKT---NHLGSRNPRLHTDEVLIALSISAA 438 (493)
T ss_pred CCCEEeCCCccccchHHHHHHHHHHHHcC---CCccccccCHHHhhhHHHHhH---HHhCCCCCCCCHHHHHHHHHHHhc
Confidence 999999975 344433 333688886543 44 56776655555443221 24554 355666655422
Q ss_pred --H-H-HHH---HhcCCCe--EEEEcChhHHHHHHHCCCce
Q psy17092 83 --P-I-KML---HKYHTKH--TLISGQGPMEEIAKRLGFNK 114 (183)
Q Consensus 83 --a-~-~~l---~~~~~k~--v~viG~~~~~~~l~~~G~~~ 114 (183)
+ + ..+ .+..+.- .-++=+......++.+|++.
T Consensus 439 tn~~A~~Al~qL~~L~Gc~aH~t~il~~~De~~frkLGi~v 479 (493)
T PRK13663 439 TNPTAQRAMEQLGNLKGCEAHSTVILSDVDENVFRKLGINV 479 (493)
T ss_pred CCHHHHHHHHhhhhccCCceeEeecCChhhHHHHHHcCCce
Confidence 1 1 122 3344432 23444566777889999863
No 383
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=20.64 E-value=1.8e+02 Score=23.02 Aligned_cols=14 Identities=7% Similarity=-0.149 Sum_probs=8.1
Q ss_pred cCCCCCCCCccccc
Q psy17092 161 SLDHKAKIGRSEAT 174 (183)
Q Consensus 161 ~l~~~~~~~~~~~~ 174 (183)
+++-=|.++.+.+.
T Consensus 207 ~i~vig~d~~~~~~ 220 (268)
T cd06273 207 DLSIVGFDDIDGSA 220 (268)
T ss_pred ceEEEecCChhHHh
Confidence 56655666655543
No 384
>PRK12404 stage V sporulation protein AD; Provisional
Probab=20.53 E-value=3.7e+02 Score=23.97 Aligned_cols=46 Identities=26% Similarity=0.245 Sum_probs=34.2
Q ss_pred CccHHHHHHHHHHhcCCCcccc--E-EEEeCCCCCCHHHHHHHHHHHhCCCC
Q psy17092 24 LPGVQDTFMNKLTNSGGRFVVP--T-VFVTNAGNSLAADKAKQLTEWLGVEV 72 (183)
Q Consensus 24 ipgA~e~l~~~l~~~ggk~~i~--~-~~lTNns~~~~~~~~~~L~~~lG~~~ 72 (183)
-|-|.++|.+.+++.|- -| + .++|.-=++--.++...|.+.-|+++
T Consensus 205 APAA~dti~~h~~d~~~---~~~~yDlI~TGDLg~vG~~i~~~ll~~~g~~~ 253 (334)
T PRK12404 205 APAAVDTIEAHLRDRQI---DASYYDLIVTGDLGHVGREIAKDLLHKHGVKV 253 (334)
T ss_pred hHHHHHHHHHHHHHhCC---ChhhccEEEEcchHHHHHHHHHHHHHHcCCCC
Confidence 46678888677887762 22 2 78898878877788888777899887
No 385
>PRK15029 arginine decarboxylase; Provisional
Probab=20.50 E-value=2e+02 Score=28.33 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=27.9
Q ss_pred CceEEEEecCCeeeeCCccCccHHHHHHHHHHhcCCCccccEEEEeCCCC
Q psy17092 5 PSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGN 54 (183)
Q Consensus 5 ~~~~iifDiDGVL~~g~~~ipgA~e~l~~~l~~~ggk~~i~~~~lTNns~ 54 (183)
.+++|++|+. | -+..-+....+++ +.+++.+ ..+|++++|....
T Consensus 53 ~~DlVLLD~~--L-Pd~dG~~~~~ell-~~IR~~~--~~iPIIlLTar~~ 96 (755)
T PRK15029 53 AIDCLMFSYQ--M-EHPDEHQNVRQLI-GKLHERQ--QNVPVFLLGDREK 96 (755)
T ss_pred CCcEEEEECC--C-CCCccchhHHHHH-HHHHhhC--CCCCEEEEEcCCc
Confidence 5788999863 1 1222121225777 8888654 2389999998775
Done!