RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17092
(183 letters)
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein,
PSI, MCSG, structural genomi protein structure
initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae}
PDB: 3rf6_A*
Length = 352
Score = 114 bits (285), Expect = 6e-31
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%)
Query: 1 EILSPSFGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADK 60
+ S FDIDGVL RGK+ + G D + L + +P + +TN G +
Sbjct: 8 QTTSKKIAFAFDIDGVLFRGKKPIAGASD-ALKLLNRNK----IPYILLTNGGGFSERAR 62
Query: 61 AKQLTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKVVTVDS 120
+ ++ L V+V Q++ SHTP K L +++ L G + +A+ GF VV
Sbjct: 63 TEFISSKLDVDVSPLQIIQSHTPYKSLVNKYSRI-LAVGTPSVRGVAEGYGFQDVVHQTD 121
Query: 121 I----RNAHPLLDCVDHRRR 136
I R+ P D +
Sbjct: 122 IVRYNRDIAPFSGLSDEQVM 141
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD
superfamily, structural genom riken structural
genomics/proteomics initiative; 1.85A {Pyrococcus
horikoshii}
Length = 263
Score = 66.4 bits (163), Expect = 8e-14
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL--AADKAKQLT 65
+IFD+DGVL RG + +PGV++ + L G F F+TN NS ++L
Sbjct: 3 AIIFDMDGVLYRGNRAIPGVRE-LIEFLKERGIPF----AFLTN--NSTKTPEMYREKLL 55
Query: 66 EWLGVEVEEDQVVMS-HTPIKMLHKYH-TKHTLISGQGPMEEIAKRLGFNKVVTVDSIRN 123
+ +G++V ++ S + K+ + G + + + LG+ V ++ +
Sbjct: 56 K-MGIDVSSSIIITSGLATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWGIVTLDEARQG 114
Query: 124 AHPLLDCV 131
+ + V
Sbjct: 115 SWKEVKHV 122
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein,
struc genomics, PSI, protein structure initiative;
2.80A {Enterococcus faecalis} SCOP: c.108.1.14
Length = 264
Score = 65.2 bits (160), Expect = 2e-13
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL--AADKAKQLT 65
G + D+DG + GK+ +P + F+ +L F +FVTN N+ A++L
Sbjct: 7 GYLIDLDGTIYLGKEPIPAGKR-FVERLQEKDLPF----LFVTN--NTTKSPETVAQRLA 59
Query: 66 EWLGVEVEEDQVVMS 80
+ V V +
Sbjct: 60 NEFDIHVPASLVYTA 74
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP
phosphatase, carbohydrate metabolism, hydrolase; 1.8A
{Escherichia coli} SCOP: c.108.1.14
Length = 250
Score = 64.8 bits (159), Expect = 3e-13
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 11/111 (9%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL--AADKAKQLT 65
+I DIDGVL+ +PG + F++ + + G V +TN D A +
Sbjct: 5 NVICDIDGVLMHDNVAVPGAAE-FLHGIMDKGLPL----VLLTN--YPSQTGQDLANRFA 57
Query: 66 EWLGVEVEEDQVVMS-HTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKV 115
GV+V + S L + K + G+G + + GF
Sbjct: 58 T-AGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTIT 107
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus
fulgidus}
Length = 268
Score = 62.6 bits (153), Expect = 2e-12
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL--AADKAKQLT 65
G I DIDGV+ + +P + + KL G + +FV+N NS ++L
Sbjct: 10 GYIIDIDGVIGKSVTPIPEGVE-GVKKLKELGKKI----IFVSN--NSTRSRRILLERLR 62
Query: 66 EWLGVEVEEDQVVMS 80
G+EV ED+++++
Sbjct: 63 S-FGLEVGEDEILVA 76
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural
genomics, unknown function, HAD superfamily hydro
PSI-2; 1.55A {Streptococcus agalactiae serogroup V}
PDB: 1ys9_A 1wvi_A 1ydf_A
Length = 264
Score = 62.5 bits (153), Expect = 2e-12
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL--AADKAKQLT 65
G + D+DG + +GK +P + F+ +L G + + VTN N+ + L
Sbjct: 7 GYLIDLDGTIYKGKSRIPAGER-FIERLQEKGIPY----MLVTN--NTTRTPESVQEMLR 59
Query: 66 EWLGVEVEEDQVVMS 80
VE + + +
Sbjct: 60 G-FNVETPLETIYTA 73
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2,
NYSGXRC, protein structure initia YORK SGX research
center for structural genomics; 1.60A {Bacillus
subtilis}
Length = 266
Score = 62.2 bits (152), Expect = 3e-12
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL--AADKAKQLT 65
G + D+DG + G + + + F+ L + G + +FVTN NS A +L
Sbjct: 8 GYLIDLDGTMYNGTEKIEEACE-FVRTLKDRGVPY----LFVTN--NSSRTPKQVADKLV 60
Query: 66 EWLGVEVEEDQVVMS 80
+ E+QV +
Sbjct: 61 S-FDIPATEEQVFTT 74
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG,
protein structure initiative, joint center for
structural G hydrolase; 2.40A {Thermotoga maritima}
SCOP: c.108.1.14 PDB: 1pw5_A*
Length = 271
Score = 62.2 bits (152), Expect = 3e-12
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL--AADKAKQLT 65
I D+DG +LPG + F+ L RF VF TN NS A D ++L
Sbjct: 19 LFILDMDGTFYLDDSLLPGSLE-FLETLKEKNKRF----VFFTN--NSSLGAQDYVRKLR 71
Query: 66 EWLGVEVEEDQVVMS 80
+GV+V +D VV S
Sbjct: 72 N-MGVDVPDDAVVTS 85
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 61.8 bits (151), Expect = 4e-12
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL--AADKAKQLT 65
++ D++G L +PG Q+ + +L + FVTN + D ++L
Sbjct: 9 AVLVDLNGTLHIEDAAVPGAQE-ALKRLRATSVMV----RFVTN--TTKETKKDLLERLK 61
Query: 66 EWLGVEVEEDQVVMS-HTPIKMLHKYHTKHTLISGQGPMEE 105
+ L E+ ED++ S ++ + + L+ + E
Sbjct: 62 K-LEFEISEDEIFTSLTAARNLIEQKQVRPMLLLDDRALPE 101
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
genomics, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Length = 306
Score = 56.9 bits (138), Expect = 3e-10
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL--AADKAKQLT 65
G++FD DGVL G++ +PG + + +L +G +FV+N NS + A +
Sbjct: 23 GVLFDCDGVLWNGERAVPGAPE-LLERLARAGKAA----LFVSN--NSRRARPELALRFA 75
Query: 66 EWLGVE-VEEDQVVMS 80
LG + +Q+ S
Sbjct: 76 R-LGFGGLRAEQLFSS 90
>2hx1_A Predicted sugar phosphatases of the HAD superfamily;
ZP_00311070.1, possible sugar phosphatase, structural
genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Length = 284
Score = 56.1 bits (136), Expect = 5e-10
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 8 GLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL--AADKAKQLT 65
+ FD GVL +LPG+++ + L G + VTN ++ A
Sbjct: 16 CIFFDAFGVLKTYNGLLPGIEN-TFDYLKAQGQDY----YIVTN--DASRSPEQLADSYH 68
Query: 66 EWLGV-EVEEDQVVMS 80
+ LG+ + D+++ S
Sbjct: 69 K-LGLFSITADKIISS 83
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos
phosphatase; hydrolase; 1.92A {Homo sapiens}
Length = 271
Score = 55.3 bits (134), Expect = 1e-09
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 8 GLIFDIDGVLVR----GKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSL--AADKA 61
G++ DI GVL G + G + + +L S + F TN S A+
Sbjct: 14 GVLLDISGVLYDSGAGGGTAIAGSVE-AVARLKRSRLKV----RFCTN--ESAASRAELV 66
Query: 62 KQLTEWLGVEVEEDQVVMS 80
QL LG ++ E +V
Sbjct: 67 GQLQR-LGFDISEQEVTAP 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.001
Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 42/192 (21%)
Query: 6 SFGLIFDID----GVLVRGKQVLPG-VQDTFMNKLTNSGGRFVVPTVFVTNAGN--SL-- 56
S LI I V + PG ++ +S G +V V + + S
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG--LVTAVAIAETDSWESFFV 294
Query: 57 AADKAKQLTEWLGVEVEEDQVVMSHT--PIKMLHKYHTKHTLISGQG---PMEEIAKRLG 111
+ KA + ++GV +T P +L +L + +G PM I+
Sbjct: 295 SVRKAITVLFFIGVRC---YEAYPNTSLPPSILED-----SLENNEGVPSPMLSIS---N 343
Query: 112 FNKVVTVDSIR--NAH-PLLDCVDHRRRVSLF--PRY---CSRAQSL--LSSEL-KITDR 160
+ D + N+H P + +SL + QSL L+ L K
Sbjct: 344 LTQEQVQDYVNKTNSHLP----AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 161 SLDHKAKIGRSE 172
S +++I SE
Sbjct: 400 SGLDQSRIPFSE 411
Score = 30.8 bits (69), Expect = 0.27
Identities = 28/160 (17%), Positives = 47/160 (29%), Gaps = 63/160 (39%)
Query: 18 VRG---KQVLPGVQDTFMNK-----------LTNSGGRFVVPTVFVTNAGN--SLAADKA 61
+ +QV V T N L N VV +G SL
Sbjct: 341 ISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGAKNLVV-------SGPPQSLYG--- 388
Query: 62 KQLTEWL---GVEVEEDQ--VVMSHTPIKMLHK-------YHTKH-----TLISGQGPME 104
L L DQ + S +K ++ +H+ LI+
Sbjct: 389 --LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 105 EI---AKRLG---FNKVVTVDS--IRN-----AHPLLDCV 131
+ AK + ++ T D +R + ++DC+
Sbjct: 447 NVSFNAKDIQIPVYD---TFDGSDLRVLSGSISERIVDCI 483
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.003
Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 31/173 (17%)
Query: 3 LSPSFGLIFDIDGVLVRGKQVL-------PGVQDTFMNKLTNSGGRFVVPTVFVTNAGNS 55
L P+ ++ IDGVL GK + VQ K +F N N
Sbjct: 147 LRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFK------------IFWLNLKNC 192
Query: 56 LAADKAKQLTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKV 115
+ + ++ + L +++ + S H + K + S Q + + K +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSD------HSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 116 VTV-DSIRNAHPLLDCVDHRRRVSLFPRYCSRAQSLLSSELKITDRSLDHKAK 167
+ V +++NA + + ++ L R+ L S T SLDH +
Sbjct: 247 LLVLLNVQNAK-AWNAFNLSCKILLTTRFKQVTDFL--SAATTTHISLDHHSM 296
Score = 28.7 bits (63), Expect = 1.4
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 35/117 (29%)
Query: 67 WLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQGPMEEIA-KRLGFNKVVTVDSIRNAH 125
W V + VV++ LHKY +L+ Q I+ + V +++ H
Sbjct: 396 WFDVIKSDVMVVVNK-----LHKY----SLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 126 PLLDCVDHRRRVSLFPR-YCSRAQSLLSSELKITDRSLD---------HKAKIGRSE 172
+ VDH P+ + S + LD H I E
Sbjct: 447 RSI--VDHYN----IPKTFDSD---------DLIPPYLDQYFYSHIGHHLKNIEHPE 488
>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase,
asparaginase, hydrolase; 1.90A {Homo sapiens} PDB:
2a8i_A 2a8m_A 2a8l_A
Length = 420
Score = 28.8 bits (64), Expect = 1.2
Identities = 5/38 (13%), Positives = 9/38 (23%), Gaps = 1/38 (2%)
Query: 78 VMSHTPIKMLHKYHTKHTLISGQGPMEEIAKRLGFNKV 115
++ L + G+G A G
Sbjct: 146 LLCEGQKGKLSAGRIPPCFLVGEGA-YRWAVDHGIPSC 182
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural
genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 28.0 bits (63), Expect = 1.8
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 3 LSPSFGLIFDIDGVLV 18
L P IFD+DG L
Sbjct: 3 LRPQTSFIFDLDGTLT 18
>2fdr_A Conserved hypothetical protein; SAD, structural genomics,
agrobacter tumefaciens, HAD-superfamily hydrolase;
2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6
Length = 229
Score = 27.6 bits (62), Expect = 2.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 8 GLIFDIDGVLV 18
+IFD DGVLV
Sbjct: 6 LIIFDCDGVLV 16
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics,
isomerase, structural genomics consortium, SGC; 1.85A
{Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Length = 246
Score = 27.6 bits (60), Expect = 2.4
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 9 LIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPT 46
L+FD+DG L + + + +G
Sbjct: 7 LLFDVDGTLTPPRLCQTDEMRALIKRARGAGFCVGTVG 44
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A*
3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A
3qyp_A 3quc_A 3qub_A 3qu4_A
Length = 243
Score = 27.3 bits (61), Expect = 2.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 8 GLIFDIDGVLV 18
++FD+DGVL
Sbjct: 26 AVLFDMDGVLF 36
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 27.3 bits (61), Expect = 2.8
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 8 GLIFDIDGVLV 18
++FD+DGVL
Sbjct: 25 AVLFDMDGVLF 35
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom
cerevisiae, structural genomics, PSI-2, protein
structure initiative; 1.60A {Saccharomyces cerevisiae}
Length = 275
Score = 27.4 bits (61), Expect = 3.0
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 8 GLIFDIDGVLV 18
+FD+DG ++
Sbjct: 37 AALFDVDGTII 47
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium
binding site, enzyme function initiativ; 1.60A
{Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Length = 259
Score = 26.9 bits (60), Expect = 3.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 8 GLIFDIDGVLV 18
++FD+DGVLV
Sbjct: 30 AVLFDLDGVLV 40
>3c17_A L-asparaginase precursor; isoaspartyl peptidase, NTN-hydrolase,
autoprot precursor, hydrolase; 1.95A {Escherichia coli}
PDB: 2zak_A
Length = 320
Score = 26.9 bits (60), Expect = 3.5
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 91 HTKHTLISGQGPMEEIAKRLGFNKV 115
+ H ++ G+G E A G +V
Sbjct: 115 QSPHVMMIGEGA-ENFAFARGMERV 138
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure,
structural genomics, NPPSFA; HET: MSE GOL; 1.73A
{Thermotoga maritima MSB8} PDB: 3kbb_A*
Length = 216
Score = 26.8 bits (60), Expect = 3.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 8 GLIFDIDGVLV 18
+IFD+DGVL+
Sbjct: 3 AVIFDMDGVLM 13
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F
1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H
2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H
2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Length = 149
Score = 26.4 bits (59), Expect = 3.8
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 57 AADKAKQLTEWLGVEVEEDQVVMSHTPIKMLHKY 90
D A +T GVEV + +V + + ++ ++
Sbjct: 96 TRDIADAVTA-AGVEVAKSEVRLPNGVLRTTGEH 128
>3iac_A Glucuronate isomerase; IDP02065, structural genom center for
structural genomics of infectious diseases, CSGI; 2.22A
{Salmonella typhimurium}
Length = 473
Score = 27.0 bits (59), Expect = 4.0
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 15/98 (15%)
Query: 52 AGNSLAADKAKQ----LTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHTLISGQ-GPMEEI 106
AG +L+ + Q + WLG + VM + +T + GP
Sbjct: 268 AGETLSELEIAQFTTAVLVWLGRQYAARGWVMQL----HIGAIRNNNTRMFRLLGPD--- 320
Query: 107 AKRLGFNKVVTVDSIRNAHPLLDCVDHRRRVSLFPRYC 144
GF+ + + LLD +D + YC
Sbjct: 321 ---TGFDSIGDNNISWALSRLLDSMDVTNELPKTILYC 355
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_v
Length = 106
Score = 26.1 bits (57), Expect = 4.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 52 AGNSLAADKAKQLTEWLGVEVEEDQV 77
AGN+ A K K + E +G+E+E+++V
Sbjct: 13 AGNTPDATKIKAILESVGIEIEDEKV 38
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics,
protein structure initiative, NEW research center for
structural genomics; 3.00A {Bacillus subtilis}
Length = 233
Score = 26.5 bits (59), Expect = 4.7
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 8 GLIFDIDGVLV 18
+IFD+DGV+
Sbjct: 4 AVIFDLDGVIT 14
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding
site, enzyme function initiativ; 1.65A {Bacteroides
thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Length = 229
Score = 26.7 bits (59), Expect = 4.7
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 9 LIFDIDGVLVR 19
L+ D+ GVL+
Sbjct: 31 LLIDLGGVLIN 41
>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase,
hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A
2qb8_A*
Length = 397
Score = 26.7 bits (58), Expect = 5.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 10 IFDIDGVLVRGKQVLPGVQDTFMN 33
+F V KQV+P +++ + N
Sbjct: 371 MFKQLNVEATRKQVVPYLEEAYSN 394
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily,
struct genomics, PSI-2, protein structure initiative;
HET: MSE; 2.40A {Porphyromonas gingivalis}
Length = 211
Score = 26.2 bits (58), Expect = 5.1
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 9 LIFDIDGVLVR 19
++FD+ GVL+
Sbjct: 8 IVFDLGGVLIH 18
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative
phosphoglucomutase, enzyme function initiative
structural genomics, isomerase; 1.70A {Escherichia
coli}
Length = 243
Score = 26.5 bits (59), Expect = 5.2
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 8 GLIFDIDGVLV 18
G+IFD+DGV+
Sbjct: 7 GVIFDLDGVIT 17
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus
lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A*
2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A*
3fm9_A
Length = 221
Score = 26.4 bits (59), Expect = 5.3
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 8 GLIFDIDGVLV 18
++FD+DGV+
Sbjct: 4 AVLFDLDGVIT 14
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine;
1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Length = 310
Score = 26.5 bits (59), Expect = 5.7
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 91 HTKHTLISGQGPMEEIAKRLGFNKV 115
T H ++ QG + A +G ++
Sbjct: 113 KTPHCFLTDQGA-AQFAAAMGVPEI 136
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG
BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Length = 162
Score = 26.2 bits (58), Expect = 5.7
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 91 HTKHTLISGQGPMEEIAKRLGFNKV 115
HT HTL+ G+ A+ +GF
Sbjct: 98 HTTHTLLVGESA-TTFAQSMGFINE 121
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2,
protein structure initiative, midwest CENT structural
genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Length = 214
Score = 26.4 bits (59), Expect = 5.7
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 8 GLIFDIDGVLV 18
+IFD+DGVL
Sbjct: 7 AIIFDMDGVLF 17
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 26.5 bits (59), Expect = 5.8
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 36 TNSGGRFVVPTVFVTNAGNSLAADKAKQLTEWLGVEVEEDQVVMSHTPIKMLHKYHTKHT 95
TN+G + V + AG A + ++L + ++ V + +K + + K
Sbjct: 112 TNTGNVYRSRAVLIA-AGL--GAFEPRKLPQLGNIDHLTGSSV--YYAVKSVEDFKGKRV 166
Query: 96 LISGQGP 102
+I G G
Sbjct: 167 VIVGGGD 173
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of
haloacid dehalogenase-LI superfamily; HET: MSE PG4;
1.66A {Deinococcus radiodurans R1}
Length = 200
Score = 26.2 bits (58), Expect = 5.8
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 9 LIFDIDGVLVR 19
L +DI GVL+
Sbjct: 7 LFWDIGGVLLT 17
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP:
c.94.1.1
Length = 310
Score = 26.1 bits (57), Expect = 6.7
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 7 FGLIFDIDGVLVRGKQVLPGVQDTFMNKLTNSGGRFVVPTVFVTNAGNSLAADKAKQLTE 66
L +D++ + RG+ + ++ +L + + VF+ GN L +
Sbjct: 63 LALAYDVNAIAERGR-----IDKNWIKRLPDDSAPYTSTIVFLVRKGNPKQIHDWNDLIK 117
Query: 67 WLGVEV 72
GV V
Sbjct: 118 -PGVSV 122
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI,
protein S initiative, midwest center for structural
genomics, MCSG; HET: MSE; 1.76A {Escherichia coli}
SCOP: c.108.1.6
Length = 226
Score = 26.0 bits (58), Expect = 7.0
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 8 GLIFDIDGVLV 18
IFD+DG+L+
Sbjct: 11 AAIFDMDGLLI 21
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center
for structural genomics, MCSG; HET: G1P; 2.00A
{Escherichia coli} SCOP: c.108.1.2
Length = 206
Score = 25.7 bits (57), Expect = 7.5
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 9 LIFDIDGVLVR 19
IFD+ V+V
Sbjct: 10 YIFDLGNVIVD 20
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural
genomics, KDO 8-P phosphatase, structure function
project, S2F; HET: MES; 1.67A {Haemophilus influenzae
RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Length = 180
Score = 25.6 bits (57), Expect = 8.1
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 9 LIFDIDGVL 17
+I D+DGVL
Sbjct: 11 VITDVDGVL 19
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI,
protein structure initiative, NYSG phosphatase; 1.80A
{Pseudomonas syringae PV} PDB: 3nrj_A
Length = 189
Score = 25.6 bits (57), Expect = 8.5
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 9 LIFDIDGVL 17
+FD+DGVL
Sbjct: 22 AVFDVDGVL 30
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO
protein structure initiative, southeast collaboratory
for S genomics; 2.40A {Aquifex aeolicus}
Length = 162
Score = 25.5 bits (57), Expect = 8.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 9 LIFDIDGVL 17
LI DIDGVL
Sbjct: 12 LIMDIDGVL 20
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics,
PSI-2; 1.80A {Legionella pneumophila}
Length = 191
Score = 25.6 bits (57), Expect = 9.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 9 LIFDIDGVL 17
LI D+DGVL
Sbjct: 22 LICDVDGVL 30
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural
genomics, phosphatase, PSI-2, protein structure
initiative; HET: MSE; 1.76A {Vibrio cholerae}
Length = 195
Score = 25.6 bits (57), Expect = 9.0
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 9 LIFDIDGVL 17
LI D+DGV
Sbjct: 28 LICDVDGVF 36
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022
hydrolase, lipopolysaccharide biosynthesis, magnesium,
STRU genomics; 1.95A {Yersinia pestis}
Length = 211
Score = 25.7 bits (57), Expect = 9.1
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 9 LIFDIDGVL 17
LI D+DGV+
Sbjct: 52 LICDVDGVM 60
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI,
divalent metal, HAD superfamily, KDO 8-P, hydrolase;
1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A
3hyc_A 3i6b_A*
Length = 188
Score = 25.6 bits (57), Expect = 9.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 9 LIFDIDGVL 17
LI D+DGVL
Sbjct: 29 LILDVDGVL 37
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid
9-phosphate phosphohydrolase, nucleotidyltransferase;
HET: PEG PG4 EDO PGE; 1.10A {Bacteroides
thetaiotaomicron} PDB: 3e84_A 3e81_A*
Length = 164
Score = 25.2 bits (56), Expect = 9.6
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 9 LIFDIDGVL 17
++ DIDGV
Sbjct: 7 ILTDIDGVW 15
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.388
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,684,552
Number of extensions: 151986
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 70
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)