BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17095
         (275 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
           Cysteine-Rich Domain Of Frizzled 8
          Length = 316

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 15/121 (12%)

Query: 54  FADHMASVGRGAAESIAECQHQFRHHRWNCSSXXXXXXXXXXXKSESTTAPSVLPPTLHI 113
           +  + ASV  GA   I EC++QF   RWNC                 +T        L  
Sbjct: 15  YLTYSASVAVGAQNGIEECKYQFAWERWNCPE---------------STLQLATHNGLRS 59

Query: 114 GSREAAFTHAIATAGVVYAVARSCKDGSLPSCGCSRTARPKDLKREWLWGGCGDNLEYGY 173
            +RE +F HAI++AGV+Y + R+C  G   +CGC  +   +   R W+WGGC DN E+G 
Sbjct: 60  ATRETSFVHAISSAGVMYTLTRNCSMGDFDNCGCDDSRNGRIGGRGWVWGGCSDNAEFGE 119

Query: 174 K 174
           +
Sbjct: 120 R 120


>pdb|4DQ8|A Chain A, Crystal Structure Of Acetate Kinase Acka From
           Mycobacterium Marinum
 pdb|4DQ8|B Chain B, Crystal Structure Of Acetate Kinase Acka From
           Mycobacterium Marinum
          Length = 391

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 102 TAPSVLPPTLHIGSREAAFTHAIATAGVVYAVARSCKD 139
            A ++LP   HI   + AF H +  A   YA+ R   D
Sbjct: 126 VARALLPDVPHIAVFDTAFFHQLPPAAATYAIDRELAD 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,812,136
Number of Sequences: 62578
Number of extensions: 150994
Number of successful extensions: 271
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 2
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)