Query psy17095
Match_columns 275
No_of_seqs 148 out of 575
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 21:45:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 100.0 2E-44 6.9E-49 336.7 8.7 121 53-189 14-135 (316)
2 2cmp_A G1P, terminase small su 33.0 15 0.00051 26.6 1.1 18 40-57 6-23 (63)
3 4a01_A Proton pyrophosphatase; 22.8 47 0.0016 34.6 3.1 24 56-79 592-615 (766)
4 1xv3_A Penaeidin-4D, PEN-4D; a 19.8 1.4E+02 0.0047 20.8 4.0 17 37-53 23-39 (47)
5 4av3_A K(+)-stimulated pyropho 19.0 35 0.0012 35.4 1.2 24 57-80 571-594 (735)
6 2jry_A R11.6, I-superfamily co 18.5 47 0.0016 23.1 1.4 13 157-169 30-42 (46)
7 2kt0_A Nanog, homeobox protein 14.5 1.6E+02 0.0055 21.0 3.6 39 42-80 28-74 (84)
8 1puf_A HOX-1.7, homeobox prote 14.0 1.1E+02 0.0038 21.7 2.5 56 25-80 2-65 (77)
9 2lqx_A Trypsin inhibitor BWI-2 18.1 39 0.0013 22.5 0.0 16 66-81 5-20 (41)
10 3zqp_A Terminase small subunit 11.7 49 0.0017 28.1 0.0 31 41-71 23-54 (164)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=100.00 E-value=2e-44 Score=336.69 Aligned_cols=121 Identities=35% Similarity=0.697 Sum_probs=107.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc-ccccCCchhHHHHHHHHHHHHH
Q psy17095 53 LFADHMASVGRGAAESIAECQHQFRHHRWNCSSGGPGAGGGGGGKSESTTAPSVLPP-TLHIGSREAAFTHAIATAGVVY 131 (275)
Q Consensus 53 ~~p~lm~sV~~GaklAI~ECQ~QFr~~RWNCSs~~~~~~~~~~~k~~~~~~~~~fg~-iL~~GTREtAFV~AItSAGVv~ 131 (275)
+||++|++|++|+++||+|||+||+++|||||+. ..++|++ +|..||||+||||||+||||+|
T Consensus 14 ~~~~~~~~v~~Ga~~~i~ECq~QFr~~RWNCs~~----------------~~~~~~~~~l~~g~REtAFv~AissAgv~~ 77 (316)
T 4f0a_B 14 AYLTYSASVAVGAQNGIEECKYQFAWERWNCPES----------------TLQLATHNGLRSATRETSFVHAISSAGVMY 77 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCC----------------TTHHHHCTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC----------------ccccCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999965 2345666 6889999999999999999999
Q ss_pred HHHhhhcCCCCCCccCcCCCCCCCCCCCcccCCCCcchhhhhhhhhhhhhhhHHhHHH
Q psy17095 132 AVARSCKDGSLPSCGCSRTARPKDLKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRK 189 (275)
Q Consensus 132 aVTRACS~G~L~~CgCd~~~~~~~~~~~w~WGGCSDNI~fG~~fSr~FlDa~er~~~~ 189 (275)
+||+|||.|.|..||||...++.+..++|+||||||||.||+.||+.|||+++++++-
T Consensus 78 avtraCs~G~l~~C~Cd~~~~~~~~~~~w~WgGCsdnv~~G~~fsr~F~D~~e~~~d~ 135 (316)
T 4f0a_B 78 TLTRNCSMGDFDNCGCDDSRNGRIGGRGWVWGGCSDNAEFGERISKLFVDGLETGQDA 135 (316)
T ss_dssp HHHHHHHTTTCSSCCCCCTTTTSEEETTEEECSCCCCHHHHHHHHHHHHHHHCCSSSH
T ss_pred HHHHHHhCCCCCCCCCCCCCCCCCcccCceeCCccchhHHHHHHHHHHhccccccccH
Confidence 9999999999999999987765433578999999999999999999999998866443
No 2
>2cmp_A G1P, terminase small subunit; DNA packaging, DNA binding DO; 1.58A {Bacteriophage SF6}
Probab=32.95 E-value=15 Score=26.62 Aligned_cols=18 Identities=28% Similarity=0.100 Sum_probs=13.3
Q ss_pred CCCCCHHHHHHhhhhhhH
Q psy17095 40 VPGLSFGQVRQCSLFADH 57 (275)
Q Consensus 40 l~GLs~rQ~~LCr~~p~l 57 (275)
...||++|+.||..|...
T Consensus 6 ~~~LT~kQ~~F~~~Yi~~ 23 (63)
T 2cmp_A 6 EPKLSPKQERFIEEYFIN 23 (63)
T ss_dssp --CCCHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHhc
Confidence 347999999999876544
No 3
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=22.83 E-value=47 Score=34.63 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccC
Q psy17095 56 DHMASVGRGAAESIAECQHQFRHH 79 (275)
Q Consensus 56 ~lm~sV~~GaklAI~ECQ~QFr~~ 79 (275)
-.|.+|.+++..-++|+++|||..
T Consensus 592 ~tm~AVg~AA~~mV~EVRRQFrei 615 (766)
T 4a01_A 592 MTMKSVGSAALKMVEEVRRQFNTI 615 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 358999999999999999999985
No 4
>1xv3_A Penaeidin-4D, PEN-4D; antimicrobial peptide, antifungal peptide, cysteine-rich, disulfide bond, oxidative folding, proline- rich, shrimp, antibiotic; NMR {Synthetic}
Probab=19.79 E-value=1.4e+02 Score=20.81 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=13.6
Q ss_pred ccCCCCCCHHHHHHhhh
Q psy17095 37 CSRVPGLSFGQVRQCSL 53 (275)
Q Consensus 37 C~~l~GLs~rQ~~LCr~ 53 (275)
|+.-.+|+..|.+.|-.
T Consensus 23 C~sC~~is~s~Ar~CC~ 39 (47)
T 1xv3_A 23 CDVCYGIPSSTARLCCF 39 (47)
T ss_dssp TTCTTTSCHHHHHHHHH
T ss_pred CccccccCHHHHHHHHH
Confidence 77777899999988743
No 5
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=19.01 E-value=35 Score=35.36 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCc
Q psy17095 57 HMASVGRGAAESIAECQHQFRHHR 80 (275)
Q Consensus 57 lm~sV~~GaklAI~ECQ~QFr~~R 80 (275)
.|.+|.+++...++|+++|||...
T Consensus 571 tm~AVgrAA~~mV~EVRRQFreip 594 (735)
T 4av3_A 571 LISAVTKAAMKMVDEIRRQAREIP 594 (735)
T ss_dssp HHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 489999999999999999999653
No 6
>2jry_A R11.6, I-superfamily conotoxin R11A; IOTA-conotoxin; HET: HYP DPN; NMR {Conus radiatus} PDB: 2p4l_A* 2jtu_A*
Probab=18.47 E-value=47 Score=23.08 Aligned_cols=13 Identities=23% Similarity=0.841 Sum_probs=10.6
Q ss_pred CCCcccCCCCcch
Q psy17095 157 KREWLWGGCGDNL 169 (275)
Q Consensus 157 ~~~w~WGGCSDNI 169 (275)
+..|.|.|||-+.
T Consensus 30 sTs~i~pgcst~~ 42 (46)
T 2jry_A 30 STNWILPGCSTSS 42 (46)
T ss_dssp CCSSSSCSCCCCT
T ss_pred eeeEEecCCcccc
Confidence 4679999999765
No 7
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=14.55 E-value=1.6e+02 Score=20.97 Aligned_cols=39 Identities=10% Similarity=-0.000 Sum_probs=22.3
Q ss_pred CCCHHHHHHh------hhhhhHHHHHHHHHHHHHHHH--HHhhccCc
Q psy17095 42 GLSFGQVRQC------SLFADHMASVGRGAAESIAEC--QHQFRHHR 80 (275)
Q Consensus 42 GLs~rQ~~LC------r~~p~lm~sV~~GaklAI~EC--Q~QFr~~R 80 (275)
-|+..|...- ..||+...-..-+..++|.+- +.=|+|+|
T Consensus 28 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR 74 (84)
T 2kt0_A 28 VFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQR 74 (84)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4677775432 456766555444555555554 45577766
No 8
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=14.04 E-value=1.1e+02 Score=21.70 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCCCCcchhhhccCCCCCCHHHHHHh------hhhhhHHHHHHHHHHHHHHHHHHh--hccCc
Q psy17095 25 APPISLEDSARVCSRVPGLSFGQVRQC------SLFADHMASVGRGAAESIAECQHQ--FRHHR 80 (275)
Q Consensus 25 ~~s~~~~~~~~iC~~l~GLs~rQ~~LC------r~~p~lm~sV~~GaklAI~ECQ~Q--Fr~~R 80 (275)
.|....++.......-..++..|...- ..||+...-..-+..++|.+.|-| |+|+|
T Consensus 2 ~p~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR 65 (77)
T 1puf_A 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRR 65 (77)
T ss_dssp CTTTTSCCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCccccccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
No 9
>2lqx_A Trypsin inhibitor BWI-2C; helical hairpin, hydrolase inhibitor; NMR {Fagopyrum esculentum}
Probab=18.11 E-value=39 Score=22.50 Aligned_cols=16 Identities=38% Similarity=0.918 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCcc
Q psy17095 66 AESIAECQHQFRHHRW 81 (275)
Q Consensus 66 klAI~ECQ~QFr~~RW 81 (275)
+.-++|||.--|..||
T Consensus 5 qqeleecqnvcrmkrw 20 (41)
T 2lqx_A 5 QQELEECQNVCRMKRW 20 (41)
No 10
>3zqp_A Terminase small subunit; DNA-binding protein, DNA packaging; 3.00A {Bacillus phage SF6} PDB: 3zqq_A
Probab=11.73 E-value=49 Score=28.14 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=0.0
Q ss_pred CCCCHHHHHHhhhhhhHH-HHHHHHHHHHHHH
Q psy17095 41 PGLSFGQVRQCSLFADHM-ASVGRGAAESIAE 71 (275)
Q Consensus 41 ~GLs~rQ~~LCr~~p~lm-~sV~~GaklAI~E 71 (275)
+.||++|+.||..|.... .+...+++.|..+
T Consensus 23 ~~LT~KQ~~F~~eYi~~~~Nat~Aa~kAGYs~ 54 (164)
T 3zqp_A 23 PKLSPKQERFIEEYFINDMNATKAAIAAGYSK 54 (164)
T ss_dssp --------------------------------
T ss_pred ccCCHHHHHHHHHHHhcCCCHHHHHHHcCCCH
Done!