RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17095
(275 letters)
>gnl|CDD|215724 pfam00110, wnt, wnt family. Wnt genes have been identified in
vertebrates and invertebrates but not in plants,
unicellular eukaryotes or prokaryotes. In humans, 19 WNT
proteins are known. Because of their insolubility little
is known about Wnt protein structure, but all have 23 or
24 Cys residues whose spacing is highly conserved.
Signal transduction by Wnt proteins (including the
Wnt/beta-catenin, the Wnt/Ca++, and the Wnt/polarity
pathway) is mediated by receptors of the Frizzled and
LDL-receptor-related protein (LRP) families.
Length = 308
Score = 166 bits (423), Expect = 4e-50
Identities = 67/157 (42%), Positives = 90/157 (57%), Gaps = 20/157 (12%)
Query: 36 VCSRVPGLSFGQVRQCSLFADHMASVGRGAAESIAECQHQFRHHRWNCSSGGPGAGGGGG 95
+CS++PGLS Q R C D MASVG GA I ECQHQFR+ RWNCS+
Sbjct: 1 ICSKLPGLSRKQRRLCRRNPDVMASVGEGARLGIEECQHQFRNRRWNCST---------- 50
Query: 96 GKSESTTAPSVLPPTLHIGSREAAFTHAIATAGVVYAVARSCKDGSLPSCGCSRTARPKD 155
+ SV L G+RE AF +AI++AGVV+AV R+C +G+L SCGC R+ R +
Sbjct: 51 -----LDSSSVFGKILKRGTRETAFVYAISSAGVVHAVTRACSEGNLESCGCDRSRRGRS 105
Query: 156 LKREWLWGGCGDNLEYGYKGGKK-----ERRKQRRRK 187
W WGGC DN+++G + ++ ER + R
Sbjct: 106 GPGGWEWGGCSDNIKFGIRFSREFLDARERGRDARAL 142
>gnl|CDD|128408 smart00097, WNT1, found in Wnt-1.
Length = 305
Score = 164 bits (417), Expect = 4e-49
Identities = 64/153 (41%), Positives = 80/153 (52%), Gaps = 20/153 (13%)
Query: 40 VPGLSFGQVRQCSLFADHMASVGRGAAESIAECQHQFRHHRWNCSSGGPGAGGGGGGKSE 99
+PGLS Q R C D M SV GA E I ECQHQFR RWNCS+
Sbjct: 2 LPGLSRRQRRLCRANPDVMISVAEGAQEGIEECQHQFRFRRWNCSTLDN----------- 50
Query: 100 STTAPSVLPPTLHIGSREAAFTHAIATAGVVYAVARSCKDGSLPSCGCSRTARPKDLKRE 159
SV L G+RE AF +AI++AGV +AV R+C +G L SCGC R + R
Sbjct: 51 ----ASVFGKVLRQGTRETAFVYAISSAGVAHAVTRACSEGELDSCGCDYRKRGRAGGRG 106
Query: 160 WLWGGCGDNLEYGYKGGKK-----ERRKQRRRK 187
W WGGC DN+++G + ++ ER K R
Sbjct: 107 WKWGGCSDNIDFGIRFSREFVDARERGKDARAL 139
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 66.5 bits (163), Expect = 2e-12
Identities = 30/80 (37%), Positives = 61/80 (76%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+EE E K+ KK KK +K EKK++E+KKEKKKK K+K+++++E+K+KKEE+K
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 254 KEKKKKKKKKEKKKKKDEGR 273
+E++++ +++++++++ + +
Sbjct: 456 EEEEEEAEEEKEEEEEKKKK 475
Score = 65.7 bits (161), Expect = 3e-12
Identities = 28/73 (38%), Positives = 59/73 (80%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K+ ++ +K EK E+K++E+KKEKKK+ +KK+E+++++K+KKE++K+++E++
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 248 KKEEKKKEKKKKK 260
++E++++E+KKKK
Sbjct: 463 EEEKEEEEEKKKK 475
Score = 63.8 bits (156), Expect = 1e-11
Identities = 27/71 (38%), Positives = 59/71 (83%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+K ++ K+ +K EKK+E++K++KK+K KKKE++++++K+K++++K++E+++ +E
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Query: 251 EKKKEKKKKKK 261
EK++E++KKKK
Sbjct: 465 EKEEEEEKKKK 475
Score = 63.0 bits (154), Expect = 3e-11
Identities = 25/73 (34%), Positives = 60/73 (82%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K+ +K ++ E+ +K++++EKK++KKK K+K+++++++KEKK+++KE+++++ E+
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Query: 253 KKEKKKKKKKKEK 265
+KE++++KKKK+
Sbjct: 465 EKEEEEEKKKKQA 477
Score = 62.2 bits (152), Expect = 4e-11
Identities = 32/73 (43%), Positives = 59/73 (80%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
K+ K+ K+ EK E+K+EE+KKEKKK+ KKK+E+++E+K+KK+++KE+++++
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 244 EKKKKKEEKKKEK 256
E++K++EE+KK+K
Sbjct: 463 EEEKEEEEEKKKK 475
Score = 61.9 bits (151), Expect = 6e-11
Identities = 29/76 (38%), Positives = 59/76 (77%), Gaps = 3/76 (3%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
++ K+ +K EK ++K++E+KKEKK KK KKK++++E++K+KKE++K++EE
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKK---KKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Query: 252 KKKEKKKKKKKKEKKK 267
++ E++K++++++KKK
Sbjct: 460 EEAEEEKEEEEEKKKK 475
Score = 61.1 bits (149), Expect = 1e-10
Identities = 24/73 (32%), Positives = 58/73 (79%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
K+ KK ++ E+ +K+ ++++K+K+KK KK++++E+++K+KK++EK+++++E
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 246 KKKKEEKKKEKKK 258
+++KEE++++KKK
Sbjct: 463 EEEKEEEEEKKKK 475
Score = 60.3 bits (147), Expect = 2e-10
Identities = 22/73 (30%), Positives = 58/73 (79%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
KK ++ ++ ++ +KK ++++K+K+KK KK++++++++K++K+++K+E++++
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 250 EEKKKEKKKKKKK 262
EE+K+E+++KKKK
Sbjct: 463 EEEKEEEEEKKKK 475
Score = 60.3 bits (147), Expect = 2e-10
Identities = 24/73 (32%), Positives = 58/73 (79%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+K +K ++ ++ EKK E++K++KK+K KKKE+++E++K+KK++++++++++
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 245 KKKKKEEKKKEKK 257
+++K+EE++K+KK
Sbjct: 463 EEEKEEEEEKKKK 475
Score = 59.9 bits (146), Expect = 3e-10
Identities = 23/72 (31%), Positives = 58/72 (80%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G K+ K+ ++ ++ KK EEEK+E+KK+ +KK+E+++E+K+K+++++++++++ +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 236 KEKKKKKKEKKK 247
+EK++++++KKK
Sbjct: 464 EEKEEEEEKKKK 475
Score = 59.9 bits (146), Expect = 3e-10
Identities = 24/72 (33%), Positives = 57/72 (79%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ ++ +K K +K+ EE+++EKK++ KKKE+++E++K++K++EK++++++ +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 237 EKKKKKKEKKKK 248
E+K++++EKKKK
Sbjct: 464 EEKEEEEEKKKK 475
Score = 58.4 bits (142), Expect = 9e-10
Identities = 20/73 (27%), Positives = 58/73 (79%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
++ +K K+ E+ EK+ E+++++KK+K KK+++++E++KEKK+++K+++E++
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 241 KKKEKKKKKEEKK 253
+++++++++++KK
Sbjct: 463 EEEKEEEEEKKKK 475
Score = 56.9 bits (138), Expect = 3e-09
Identities = 24/71 (33%), Positives = 56/71 (78%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
++ K+ K ++KR++E++EK+++ KKKE+++E++KEKK++EK++E+++ ++
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Query: 234 KKKEKKKKKKE 244
+K+E+++KKK+
Sbjct: 465 EKEEEEEKKKK 475
Score = 56.9 bits (138), Expect = 3e-09
Identities = 24/73 (32%), Positives = 58/73 (79%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
++ K+ +K ++ E+K EE+K+EKKK+ KKKE++++E+K++K+++K++++E+
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 240 KKKKEKKKKKEEK 252
+++KE++++K++K
Sbjct: 463 EEEKEEEEEKKKK 475
Score = 52.6 bits (127), Expect = 7e-08
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK KK KK +K +K+++++KKEKKKK KK++++++++KEKK+++ E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Score = 52.6 bits (127), Expect = 8e-08
Identities = 21/62 (33%), Positives = 50/62 (80%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ K+R ++K K+KK K++E++EE++KEKK+E+K+E++++ +++++++++KKKK
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Query: 237 EK 238
+
Sbjct: 476 QA 477
Score = 50.7 bits (122), Expect = 3e-07
Identities = 20/67 (29%), Positives = 50/67 (74%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+++R++ ++++K+K ++++EEE++E++KKE++KE+++E+ ++EK++
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Query: 227 EKKKKKK 233
E++KKKK
Sbjct: 469 EEEKKKK 475
Score = 50.7 bits (122), Expect = 3e-07
Identities = 20/60 (33%), Positives = 40/60 (66%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++E + K+ KK KK EK +KK+E++KK+++KK KKK+++E+++K+ + +
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 34.9 bits (81), Expect = 0.043
Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEK-KEEKKKEKKKEKKKEK 219
K +K+ + + K KKEEE++EEE+ EE+K+E++++KKK+
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 59.3 bits (144), Expect = 4e-10
Identities = 34/82 (41%), Positives = 44/82 (53%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KE E++ + K+ KKE K E KK+ +KKKKKKKEKK+ K E + K K
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFK 94
Query: 253 KKEKKKKKKKKEKKKKKDEGRR 274
+K KK KKK K K +E
Sbjct: 95 TPKKSKKTKKKPPKPKPNEDVD 116
Score = 58.6 bits (142), Expect = 8e-10
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K+ EE+ + KK+KK++K + KKK +KKKKKKK++K+ K + + K +
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFK 94
Query: 252 KKKEKKKKKKKKEKKKKKDE 271
K+ KK KKK K K ++
Sbjct: 95 TPKKSKKTKKKPPKPKPNED 114
Score = 55.1 bits (133), Expect = 1e-08
Identities = 32/81 (39%), Positives = 43/81 (53%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+K KKE++ E +KK EKKK+KKKEKK+ K + E K K KK KK KKK K K
Sbjct: 52 TSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKP 111
Query: 247 KKKEEKKKEKKKKKKKKEKKK 267
+ + K + +K
Sbjct: 112 NEDVDNAFNKIAELAEKSNVY 132
Score = 52.0 bits (125), Expect = 1e-07
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
EE+ + KK+KK++K E KKK +KK KKKKK+KK+ K + + + K +K
Sbjct: 40 STFSEEENKVATTSTKKDKKEDKNNESKKKSEKK-KKKKKEKKEPKSEGETKLGFKTPKK 98
Query: 253 KKEKKKKKKKKEKKKKKDE 271
K+ KKK K + + D
Sbjct: 99 SKKTKKKPPKPKPNEDVDN 117
Score = 50.9 bits (122), Expect = 2e-07
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+ + + KE ++E K +K K++ K + KK+ +KKKK+K
Sbjct: 18 KSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKK 77
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKK 269
K+KKE K + + K K KK KK
Sbjct: 78 KEKKEPKSEGETKLGFKTPKKSKK 101
Score = 50.5 bits (121), Expect = 3e-07
Identities = 27/104 (25%), Positives = 49/104 (47%)
Query: 166 GDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ L + ++ + +K ++E+K E K++ +K+KKK+K+K++ K E +
Sbjct: 29 SNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ K KK +K KKK K K E+ K + EK
Sbjct: 89 TKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVY 132
Score = 46.2 bits (110), Expect = 9e-06
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+K + + K+ +++ K KK KK++K + K+K +KK++K
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Query: 253 KKEKKKKKKKKEKKKK 268
KKEKK+ K + E K
Sbjct: 77 KKEKKEPKSEGETKLG 92
Score = 45.9 bits (109), Expect = 1e-05
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
++ K + K+ +++ K KK KKE K + +KK EKKKKK
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Query: 261 KKKEKKKKK 269
KK++K+ K
Sbjct: 77 KKEKKEPKS 85
Score = 45.5 bits (108), Expect = 1e-05
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
++ + + K+ +++ K KK+KK+ K + KKK EKKK+K
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Query: 257 KKKKKKKEKKKKKDEGRRR 275
KK+KK+ + + + G +
Sbjct: 77 KKEKKEPKSEGETKLGFKT 95
Score = 44.7 bits (106), Expect = 3e-05
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
++ K + K+ E++ + KK +K+ K E KKK E+KKK+
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Query: 256 KKKKKKKKEKKKKKDEGRR 274
KK+KK+ K + + K +
Sbjct: 77 KKEKKEPKSEGETKLGFKT 95
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 59.8 bits (144), Expect = 5e-10
Identities = 34/99 (34%), Positives = 57/99 (57%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK+ +++ + K+ E + E E ++ + +++ + +KKKE+ K+K KKK
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E+KKK E KKK EE KK+ + KK KKK DE +++
Sbjct: 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 59.0 bits (142), Expect = 8e-10
Identities = 38/98 (38%), Positives = 57/98 (58%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK+ + ++ K + E E E EEK + +K+K++ KKK + K+K ++KKK
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
E KKK +E KKK +E KK KKK E KKK +E ++
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 59.0 bits (142), Expect = 9e-10
Identities = 35/99 (35%), Positives = 59/99 (59%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ + + + + + E +E+ + EKKKE+ K+K KKK ++K+K + KKK
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA 1400
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E+ KKK ++ KK KK+ + KKK E+KKK DE +++
Sbjct: 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Score = 59.0 bits (142), Expect = 9e-10
Identities = 32/99 (32%), Positives = 56/99 (56%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK +++ + +K+ ++K EE K+ + K + + + + +++ + +KKK+
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E KKK KKK EEKKK + KKK +E KKK DE ++
Sbjct: 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA 1413
Score = 58.2 bits (140), Expect = 2e-09
Identities = 39/103 (37%), Positives = 67/103 (65%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Y+ KK + ++ ++ + K K EE +K EE+K++ ++ KKKE +++KK +E KK +++ K
Sbjct: 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK 1660
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K E+ KK +E KKK EE KK ++ +KK E KK+ E ++
Sbjct: 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Score = 57.1 bits (137), Expect = 4e-09
Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE---KKKEKKKKKKK 234
+E++K K+K + K+ +E +++ +E KKK +KK E+ KK K E + +
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ ++K + +KKKEE KK+ KKK E+KKK DE +++
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 56.7 bits (136), Expect = 4e-09
Identities = 35/101 (34%), Positives = 63/101 (62%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ E + + K+K + KK+ + +++ +E+KK ++ K+K +E KKK + +K K
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAK 1417
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KK ++ KKK E+KKK +E KK+ ++ KK E KKK +E ++
Sbjct: 1418 KKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 56.7 bits (136), Expect = 5e-09
Identities = 40/102 (39%), Positives = 61/102 (59%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K E +K K+K K++ E++++ E KKK ++ +K E KKK ++ +K ++ K
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK 1463
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK E+ KK E KKK EE KK + KKK +E KKK DE ++
Sbjct: 1464 KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA 1505
Score = 56.3 bits (135), Expect = 6e-09
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKK---EEKKKEKKKEKKKEKKKKEKKKEKKK 230
+ E + K + E++KEE KK KKK ++K+K E KKK ++ +KK
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ KK KKK ++ KKK E+KK+ + KKK E+ KK DE +++
Sbjct: 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Score = 56.3 bits (135), Expect = 7e-09
Identities = 36/101 (35%), Positives = 63/101 (62%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +E++K K+K + K++ ++ ++ KKK + +KK E+KKK + +KK ++
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA 1443
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KK ++ KKK E+ KK EE KK+ ++ KK E KKK +E ++
Sbjct: 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
Score = 56.3 bits (135), Expect = 7e-09
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK--EKKKKEKKKE 227
E K + + + + + +E+ E E+KKEE KK+ KKK EKKK ++ K+
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K ++ KKK ++ KK KKK +E KK+ ++KKK E KKK +E ++
Sbjct: 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 55.9 bits (134), Expect = 8e-09
Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E++K K+ ++KK +E K++ ++ +K E KK+ ++ KKK + K+K ++ KK E
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
Query: 238 KKKKKKEKKKKKEEKKKEKKK--KKKKKEKKKKKDEGRRR 275
K + E + E +EK + +KKK+E KKK D +++
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
Score = 55.9 bits (134), Expect = 8e-09
Identities = 30/104 (28%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K + +++ + +K +KK EE K++ +KK E+ K+ + K + + + +
Sbjct: 1303 KADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
Query: 234 KKKEK--KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++K + +KKK+E KKK + KK+ ++KKK E KKK +E +++
Sbjct: 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 55.5 bits (133), Expect = 1e-08
Identities = 35/98 (35%), Positives = 65/98 (66%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ ++K K+K + KK+ +E +++ +E+KKK + +K KKK + +KK ++KKK
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA 1433
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++ KKK E+ KK +E KK+ ++ KK +E KKK +E ++
Sbjct: 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 55.5 bits (133), Expect = 1e-08
Identities = 39/105 (37%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +E +K K+K + K+ EE +++ +E KK ++ K+K +E KK ++ K+K ++ K
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKK----KKKEKKKKKDEGRR 274
KK ++ KK E KKK +E KK ++ KK KK E+ KK DE ++
Sbjct: 1497 KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Score = 55.5 bits (133), Expect = 1e-08
Identities = 36/98 (36%), Positives = 66/98 (67%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK+ + ++++ + K+K EE +K EE+ + K E+ K+ +++KKK E+ K+ ++ +KK
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA 1691
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
E KK+ E+ KK EE KK++ ++KKK E+ KK +E +
Sbjct: 1692 EALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729
Score = 55.1 bits (132), Expect = 1e-08
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKK----EEKKKEKKKEKKKEKKKKEKK 225
E K++ + ++K + K+K +E +K+ E+ E KKK ++ +K +E KKK ++
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+K + KKK E+ KK E KKK EE KK+ + KK E KKK DE ++
Sbjct: 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Score = 55.1 bits (132), Expect = 1e-08
Identities = 36/98 (36%), Positives = 64/98 (65%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K + + +K + +KK EE K+ E+ E+K E K++ +E KK E+ K+K+ ++KKK E
Sbjct: 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ KK +E+ K K E+ K++ ++ KKK ++ KKDE ++
Sbjct: 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
Score = 55.1 bits (132), Expect = 2e-08
Identities = 37/102 (36%), Positives = 64/102 (62%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +E +K+ +K K++ ++ ++K EEKKK + +KK E+ KK + +KK ++
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK E+ KKK E+ KK +E KK+ ++ KK E KKK +E +++
Sbjct: 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 55.1 bits (132), Expect = 2e-08
Identities = 37/99 (37%), Positives = 64/99 (64%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK+ + ++ + + K K EE K+ E+ ++K +E KK ++ EKK E K++ ++ KK +
Sbjct: 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E KKK+ E+KKK EE KK +++ K K E+ KK+ E ++
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK 1744
Score = 55.1 bits (132), Expect = 2e-08
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ R+ +K + K+K +E +K EEKK K E KK+ ++ KK E KK+ ++ KKK
Sbjct: 1275 EEARKADELKKAEEKKKADEAKKAEEKK--KADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KKK +E KK E K E + + E ++K E
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Score = 55.1 bits (132), Expect = 2e-08
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 5/106 (4%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +E++K K+K + K+ +E +++ +E KK E+ K+K +E KK ++ K+K ++ K
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKK-----KKEKKKKKDEGRR 274
K E KKK +E KKK +E KK + KKK K E+ KK DE ++
Sbjct: 1484 KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK 1529
Score = 54.4 bits (130), Expect = 2e-08
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K ++K +K+ + KK+ EE +++ E KK K+K E KKK ++K+K + K
Sbjct: 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KK E+ KK E KKK EE KK ++ KKK +E KK +
Sbjct: 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
Score = 53.2 bits (127), Expect = 6e-08
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEE--KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+E R +R+ K EE K +E K EEKKK + +K +EKKK ++ K+K ++ KK
Sbjct: 1258 EEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA 1317
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E KKK +E KKK + KK+ ++ KK E K + E
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357
Score = 52.8 bits (126), Expect = 8e-08
Identities = 34/98 (34%), Positives = 64/98 (65%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E + + + K+ +E+++K EE K+ ++ EKK + +K+ +E KK ++ KKK+ +
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
EKKK ++ KK ++E K K ++ KK+ +E KKK +E ++
Sbjct: 1714 EKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
Score = 52.5 bits (125), Expect = 1e-07
Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +E +K K+K + K+ +E +++ +E KK ++ K+K +E KKK + +K + K
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKK---KKKEKKKKKDEGRR 274
KK ++ KK +E KK E KK E+ KK KK E+KKK DE ++
Sbjct: 1510 KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
Score = 52.5 bits (125), Expect = 1e-07
Identities = 36/97 (37%), Positives = 56/97 (57%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K + ++K K+K K+ +++ E KKK ++K+K E KKK ++ +K + K
Sbjct: 1391 KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KK E+ KK +E KKK EE KK + KKK +E KK +
Sbjct: 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE 1487
Score = 51.3 bits (122), Expect = 2e-07
Identities = 34/98 (34%), Positives = 68/98 (69%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK ++++ ++ +K++ EE++K EE K+ +++ K K ++ KK +E KK+ ++ KK ++
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++KK + KK+ EE KK ++ KKK+ E+KKK +E ++
Sbjct: 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 51.3 bits (122), Expect = 3e-07
Identities = 32/98 (32%), Positives = 66/98 (67%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+ +++++ + K+K+ EE+K+ E+ ++ ++E K + +E KK E+ K+K ++ KK +E
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+KK E KK+ E+ K+ ++ KKK+ ++KKK E ++
Sbjct: 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 50.9 bits (121), Expect = 3e-07
Identities = 30/98 (30%), Positives = 64/98 (65%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K + ++ ++ + K+K E+ +K+E ++++K +E KK +++ K K ++ +K ++ KKK E
Sbjct: 1619 KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ KK +E +KK E K++ ++ KK E+ KKK+ ++
Sbjct: 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Score = 50.9 bits (121), Expect = 3e-07
Identities = 31/92 (33%), Positives = 64/92 (69%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
++ ++ ++K + +K EE+EK+ + +K+ E+ K+ ++ KKK+ ++K+K ++ KK +E
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ K K E+ KK+ E+ K+K ++ KK E++KKK
Sbjct: 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
Score = 50.9 bits (121), Expect = 4e-07
Identities = 34/102 (33%), Positives = 59/102 (57%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ ++ R+ + R R++ + EE +K ++ K+ +++KK ++ KK ++K+K + K
Sbjct: 1249 RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAK 1308
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK E+ KK E KKK EE KK+ KKK E+ KK E +
Sbjct: 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
Score = 49.0 bits (116), Expect = 1e-06
Identities = 35/96 (36%), Positives = 63/96 (65%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R+ + +K + R +E + EE+K+ K +E KK ++ + K +E KK +++KKK ++ KK
Sbjct: 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+ +EKKK +E KK E++ K K E+ KK +E +++
Sbjct: 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
Score = 48.2 bits (114), Expect = 3e-06
Identities = 33/98 (33%), Positives = 64/98 (65%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K ++++ K + +K EE + + E+ ++ ++EKKK ++ +KK+ E+KK+ ++ KK ++E
Sbjct: 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K K E+ KK EE KK+ ++ KK +E +KK E ++
Sbjct: 1659 NKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
Score = 47.1 bits (111), Expect = 7e-06
Identities = 38/103 (36%), Positives = 63/103 (61%), Gaps = 6/103 (5%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEE---KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K++ ++ ++ + K+K EE +K +E K EE KK+ + KK + KK+ + KK ++ K
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKK---KKKEKKKKKDEGRR 274
K ++ KK +E KK E KK E+KKK KK E+ KK +E ++
Sbjct: 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565
Score = 47.1 bits (111), Expect = 7e-06
Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK ++ + K+K ++ +++ +E KK + K+K E KK ++ K+ + KK ++ KK
Sbjct: 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA 1536
Query: 237 EKKKKKKEKKKKKEEKKKE--KKKKKKKKEKKKKKDEGRR 274
++ KK +EKKK E KK E KK ++KKK ++ KK E +
Sbjct: 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
Score = 46.3 bits (109), Expect = 1e-05
Identities = 32/99 (32%), Positives = 62/99 (62%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + + + K+ K EE K+ E+ + K +E KK ++++KK ++ KK++ ++KKK +
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E KK ++E K K E+ K+ ++ KKK E+ KK +E ++
Sbjct: 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Score = 46.3 bits (109), Expect = 1e-05
Identities = 34/102 (33%), Positives = 55/102 (53%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +E +K + + +K EE + + K +E +K + K+ +++KK +
Sbjct: 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK E+KKK E KKK EE KK + KKK +E KKK D +++
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
Score = 46.3 bits (109), Expect = 1e-05
Identities = 31/92 (33%), Positives = 63/92 (68%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K+ + +++ + +K EE +K+E ++++K +E KK +++ K K E+ K++ ++ KKK
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA 1746
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
E+ KK +E+KKK KKE++KK ++ K+K+
Sbjct: 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
Score = 45.5 bits (107), Expect = 2e-05
Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 8/103 (7%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKK--------EEKKKEKKKEKKKEKKKKEKKKEKKKK 231
++ + +K + K+K EE +K EE K E KK E+ + ++ K +E+KK K ++
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KK +E K K +E KK +EEKKK ++ KKK+ E+KKK +E ++
Sbjct: 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Score = 42.4 bits (99), Expect = 2e-04
Identities = 31/102 (30%), Positives = 61/102 (59%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
E K + ++ + ++K +K EE +K +E K+ ++ +K E KK ++KK+ + KK
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ KK E+KKK +E KK +E+K +K ++ K+ ++ + E
Sbjct: 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE 1595
Score = 42.1 bits (98), Expect = 2e-04
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 9/105 (8%)
Query: 178 KERRKQRRRKRKRKRKKEEEEK---EEEKKEEKKKEKKKEKKKEKKKKE---KKKEKKKK 231
K++ ++ ++K +K E +K E +K EE KK + +K +E KK + K +EKKK
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKK---KKKEKKKKKDEGR 273
+ KK ++ KK E+KKK EE KK ++ K +K E+ KK +E R
Sbjct: 1549 DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
Score = 42.1 bits (98), Expect = 3e-04
Identities = 30/101 (29%), Positives = 61/101 (60%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K + ++ + ++K +K EE +K EEKK+ ++ +K +E K +K ++ +K ++ +
Sbjct: 1534 KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++ K ++EKK K EE KK ++ K K +E KK ++E ++
Sbjct: 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK 1634
Score = 41.3 bits (96), Expect = 5e-04
Identities = 32/94 (34%), Positives = 64/94 (68%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KKE ++++ + +K ++E + K EE K+E +++KKK ++ +K ++EKKK KK+++K
Sbjct: 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ ++ +KEK+ EE+ E+ +K++ + KK KD
Sbjct: 1769 KAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKD 1802
Score = 41.3 bits (96), Expect = 5e-04
Identities = 32/106 (30%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKE----EKKKEKKKEKKKEKKKKEKKKEKK 229
K ++ ++ +K + +K +E +K EEKK+ +K +E KK ++K+K ++ KK E+
Sbjct: 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K +K ++ KK E+ + +E K +++KK K E+ KK +E + +
Sbjct: 1576 KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
Score = 40.9 bits (95), Expect = 7e-04
Identities = 33/102 (32%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ER+ + RK + +K E +K EE K++ ++ KK E+++ ++ K +E + ++
Sbjct: 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR 1268
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKK---KKKEKKKKKDEGRRR 275
+ K +E +K E KK E+KKK KK E+KKK DE +++
Sbjct: 1269 QAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
Score = 40.1 bits (93), Expect = 0.001
Identities = 34/100 (34%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK--K 231
K +++++ + +K + + + EE KK E+ + ++ K E++KK K +E KK +
Sbjct: 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K E+ KK +E+KKK E+ KK++ ++KKK E+ KK +E
Sbjct: 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
Score = 39.0 bits (90), Expect = 0.002
Identities = 32/102 (31%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K ++ ++ +K + K+K +E +K EE K K +EKKK ++ +K +++K +K ++
Sbjct: 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELK--KAEEKKKAEEAKKAEEDKNMALRKAEE 1585
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK ++ + +E K EE+KK K ++ KK E+ K K E ++
Sbjct: 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
Score = 38.6 bits (89), Expect = 0.003
Identities = 31/94 (32%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K++ + ++K + +K EEE K + ++ +K+ E+ K+K +E KK E++K+K KK++E
Sbjct: 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
Query: 238 KKKKKKEKKKK---KEEKKKEKKKKKKKKEKKKK 268
KK ++ K+K+ +EE +E +K++ + +KK K
Sbjct: 1768 KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
Score = 38.2 bits (88), Expect = 0.004
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 22/118 (18%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEE--KKEEKKKEKKKEKKKEKKKKEKKKEK--------- 228
R+ + RK + RK E+ +K E K EE KK+ ++ KK E+++ ++ K
Sbjct: 1206 RKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
Query: 229 -------KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK----KKKKEKKKKKDEGRRR 275
K ++ +K ++ KK +EKKK E KK E+KKK KKK E+ KK DE +++
Sbjct: 1266 ARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
Score = 35.9 bits (82), Expect = 0.023
Identities = 28/91 (30%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK--KEKKKEKKKKKKK 234
+K++ ++ ++ + + K EE K+E ++++KK E+ K+ ++EKKK KK+E+KK ++
Sbjct: 1714 EKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+KEK+ +E+ +++EK++ + KK K
Sbjct: 1774 RKEKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
Score = 34.7 bits (79), Expect = 0.051
Identities = 24/90 (26%), Positives = 53/90 (58%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R+ + RK + +K E K EE ++ ++ K ++ +K + ++ ++E+K ++ +K E
Sbjct: 1164 RKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDA 1223
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KK + KK +E KK ++ KK ++E+ ++
Sbjct: 1224 KKAEAVKKAEEAKKDAEEAKKAEEERNNEE 1253
Score = 34.0 bits (77), Expect = 0.093
Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ +R + RK + RK EE K E+ K+ + K +E +K ++ ++ + +K + +K
Sbjct: 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKA 1208
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
E+++K +E +K ++ KK E KK + E KK +E ++
Sbjct: 1209 EEERKAEEARKAEDAKKAEAVKKAE--EAKKDAEEAKK 1244
Score = 32.8 bits (74), Expect = 0.21
Identities = 25/87 (28%), Positives = 51/87 (58%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R+ + +K + RK EE K EE ++ + K + +K +++++ ++ +K + KK E
Sbjct: 1170 RKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAV 1229
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKK 266
KK +E KK EE KK ++++ ++ +K
Sbjct: 1230 KKAEEAKKDAEEAKKAEEERNNEEIRK 1256
Score = 31.3 bits (70), Expect = 0.71
Identities = 24/91 (26%), Positives = 51/91 (56%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
E K ++ + R+ + ++ +E + E+ +K E ++ ++E+K E+ +K + +K
Sbjct: 1166 AEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKK 1225
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+ KK +E KK +E KK +EE+ E+ +K
Sbjct: 1226 AEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
Score = 31.3 bits (70), Expect = 0.72
Identities = 21/102 (20%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
GK E + + K ++ + + ++ + ++ K ++ K+ + K ++ +K
Sbjct: 1058 GKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKA 1117
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKK---KKKKEKKKKKDEGRR 274
+E KKK ++ +K +E +K E +K +K E K+ + R+
Sbjct: 1118 EEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARK 1159
Score = 30.9 bits (69), Expect = 0.93
Identities = 26/105 (24%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
G +E +K K + RK EE +K+ E + ++ +K E ++ ++ K ++ K+ +
Sbjct: 1097 FGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI 1156
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKK----KKKEKKKKKDEGRR 274
+K + +K E+ +K E+ KK + +K +K E+ +K ++ R+
Sbjct: 1157 ARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARK 1201
Score = 30.5 bits (68), Expect = 1.3
Identities = 22/95 (23%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ R + +E K EE K+ + + ++ +K E+ KK+ + +K ++ +K E +K
Sbjct: 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKA 1142
Query: 243 KEKKKKKEEKKKEKKKK---KKKKEKKKKKDEGRR 274
+E +K ++ K+ E +K +K E+ +K ++ ++
Sbjct: 1143 EEARKAEDAKRVEIARKAEDARKAEEARKAEDAKK 1177
Score = 29.3 bits (65), Expect = 3.2
Identities = 25/99 (25%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E ++ K + +K E + EE +K E+ K+K ++ +K ++ ++ + +K ++ +K E
Sbjct: 1091 EATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAED 1150
Query: 239 KKKKKEKKKKKEEKKKEKKKK---KKKKEKKKKKDEGRR 274
K+ + +K ++ +K E+ +K KK E +K +E R+
Sbjct: 1151 AKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRK 1189
Score = 29.0 bits (64), Expect = 3.9
Identities = 25/96 (26%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEK-EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
K + R+ + RK + RK E+ +K E +K E+ ++ ++ +K E +K + K +++
Sbjct: 1152 KRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEE 1211
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+K +E +K + KK + +K +E KK ++ +K ++
Sbjct: 1212 RKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEE 1247
Score = 28.6 bits (63), Expect = 5.4
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEE---KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
+ RK ++ + +K E+ ++ E K EE++K ++ K ++ KK E K+ ++ KK
Sbjct: 1179 EAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKD 1238
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+E KK ++E+ ++ K +E + + + K E R+
Sbjct: 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
Score = 28.2 bits (62), Expect = 6.8
Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
G E + + + + + K+ + ++ + ++ K E E KK +
Sbjct: 1052 IDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAE---EAKKTET 1108
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKK----KKKEKKKKKDEGRR 274
K E+ +K +E KKK E+ +K ++ +K +K E+ +K ++ +R
Sbjct: 1109 GKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKR 1153
Score = 27.8 bits (61), Expect = 7.3
Identities = 20/86 (23%), Positives = 48/86 (55%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K + ++ + +K+ + KK+EEEK++ +K++EKK E+ +++K+ ++E ++ +
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKK 259
K++ + KK + E K+
Sbjct: 1791 KRRMEVDKKIKDIFDNFANIIEGGKE 1816
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 58.8 bits (143), Expect = 6e-10
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+E + K +K+ K KK K+ +KKEK+K+K K K++ + K K+++
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTS 432
Score = 58.4 bits (142), Expect = 9e-10
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
EE K + ++ + K K +K+ K KK K+ +KKEK+K+K + KK + K +
Sbjct: 365 EEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Query: 265 KKKKKDE 271
++K
Sbjct: 425 RRKPSGT 431
Score = 58.0 bits (141), Expect = 1e-09
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K K +K+ K KK K+ EKK+K+KEK K K+ + K K++K ++
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 57.3 bits (139), Expect = 2e-09
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K K +KK K KK K+ E+K+KEK+K K KK + K+ G+RR
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRR 426
Score = 56.5 bits (137), Expect = 4e-09
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K +R EE K E + K K +KK K +K K+ +KK+K+++K K K++ +
Sbjct: 359 KIERYIEEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRD 418
Query: 249 KEEKKKEKKKKKKKKE 264
+ K +K +E
Sbjct: 419 TKNIGKRRKPSGTSEE 434
Score = 54.9 bits (133), Expect = 1e-08
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E K R R + K EK+ K +K K+ EKK+++K+K K K++ + K +
Sbjct: 365 EEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Query: 238 KKKKKKE 244
++K
Sbjct: 425 RRKPSGT 431
Score = 45.7 bits (109), Expect = 1e-05
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ + K+ + +K K+ EKK+++K++ K +K+ ++ K K++K
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTS 432
Score = 44.2 bits (105), Expect = 4e-05
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E R + + ++K K ++ ++ E+K+KEK+K K K++ + K K++K E
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSE 433
Query: 238 K 238
+
Sbjct: 434 E 434
Score = 37.2 bits (87), Expect = 0.006
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
D L K +++ + +K KR +++E+++E+ K +K+ K K +K +
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSE 433
Query: 227 E 227
E
Sbjct: 434 E 434
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 55.6 bits (134), Expect = 7e-09
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
Q ++ + K+K+ EE K ++ E K K + + +KK K++ +K+ E++ K K E KKK
Sbjct: 109 QAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKA 168
Query: 243 KEKKKKKEEKKKEKK--KKKKKKEKKKKKDE 271
E KKK E + K K K K K E+ K K E
Sbjct: 169 AEAKKKAEAEAKAKAEAKAKAKAEEAKAKAE 199
Score = 51.0 bits (122), Expect = 2e-07
Identities = 30/104 (28%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE-KKKEKKKKKKKK 235
E+ +Q+ +++ +K ++ E+ K+ ++K+K+ E+ K K+ E K K + + +KK
Sbjct: 85 AAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKA 144
Query: 236 KEKKKKKKEKKKKKEE----KKKEKKKKKKKKEKKKKKDEGRRR 275
KE+ KK+ E++ K + KKK + KKK + + K K E + +
Sbjct: 145 KEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Score = 50.2 bits (120), Expect = 4e-07
Identities = 24/93 (25%), Positives = 54/93 (58%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+++R + ++K ++ EK ++ E+ K+ ++++K+ ++ K K+ + K K + +
Sbjct: 80 AEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAE 139
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+KK K+E KK+ EE+ K K + KK+ + K
Sbjct: 140 AEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAK 172
Score = 49.4 bits (118), Expect = 6e-07
Identities = 23/99 (23%), Positives = 59/99 (59%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ E +++R + ++K+ E+ EK ++ ++ K+ ++++K+ E+ K K+ + K K
Sbjct: 76 QAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAK 135
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + +K+ K++ +++ +E+ K K E KKK E +++
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKK 174
Score = 47.5 bits (113), Expect = 3e-06
Identities = 23/94 (24%), Positives = 56/94 (59%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ER+K+ ++ + K+ E+ +K+ E++ +K K+ ++ ++ +EK+K+ ++ K
Sbjct: 67 QERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKA 126
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ + + K + E +KK K++ KK+ E++ K
Sbjct: 127 KQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKA 160
Score = 47.1 bits (112), Expect = 4e-06
Identities = 23/89 (25%), Positives = 58/89 (65%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
R Q+++K K+++E ++K E++ EE +K++ E+ ++K+ +++ +K K+ ++ K+
Sbjct: 54 RIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQ 113
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++++K+ +E K K+ + K K E + +K
Sbjct: 114 AEEKQKQAEEAKAKQAAEAKAKAEAEAEK 142
Score = 47.1 bits (112), Expect = 4e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K+ + + ++ + K E E E++ KEE KK+ ++E K + + KKK + KKK +
Sbjct: 118 QKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEA 177
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E K K + K K K E+ K K + K K +
Sbjct: 178 EAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAA 210
Score = 45.2 bits (107), Expect = 1e-05
Identities = 23/93 (24%), Positives = 45/93 (48%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
E + + + ++K K+E +++ EE+ + K + K+K E KKK + + K K + K K
Sbjct: 129 AAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K ++ K K + + K + K + E
Sbjct: 189 AKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAA 221
Score = 42.9 bits (101), Expect = 8e-05
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEE---KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
E + ++ + K K + E E+K +E K+ E++ + K + +KK E KK+ + + K K
Sbjct: 123 EAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAK 182
Query: 236 KEKKKKKKE---KKKKKEEKKKEKKKKKKKKEKKKKK 269
E K K K K K + K K + K E +
Sbjct: 183 AEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAA 219
Score = 42.9 bits (101), Expect = 1e-04
Identities = 24/95 (25%), Positives = 45/95 (47%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E +++ K + K++ EEE K + E KKK + +KK E + K K + K K K ++
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEA 194
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K + + K E K + + + ++
Sbjct: 195 KAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKA 229
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 55.0 bits (133), Expect = 1e-08
Identities = 22/68 (32%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK---EKKKKKEEK 252
E + K +++E+K K E++++E+ +EKK++KKK++ + K K E+++K EEK
Sbjct: 255 PEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEK 314
Query: 253 KKEKKKKK 260
+++K+ +K
Sbjct: 315 ERKKQARK 322
Score = 54.6 bits (132), Expect = 1e-08
Identities = 26/73 (35%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ RK + R++EEE+ + +EE++ E+ +EKK+EKKK+E + K K E+++
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQ-EEAQEKKEEKKKEE---REAKLAKLSPEEQR 309
Query: 241 KKKEKKKKKEEKK 253
K +EK++KK+ +K
Sbjct: 310 KLEEKERKKQARK 322
Score = 49.6 bits (119), Expect = 5e-07
Identities = 17/60 (28%), Positives = 40/60 (66%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K R ++ + K ++ +EE +E+K+E+KK+E++ + K ++++K E+K++KK+ +
Sbjct: 262 DKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
Score = 49.6 bits (119), Expect = 6e-07
Identities = 19/69 (27%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK---KKKKKKEK 265
+ K + +++E++K K +++++E+ ++KKE+KKK+E + K K ++++K E+
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313
Query: 266 KKKKDEGRR 274
K++K + R+
Sbjct: 314 KERKKQARK 322
Score = 48.8 bits (117), Expect = 9e-07
Identities = 17/69 (24%), Positives = 48/69 (69%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
E ++ K +++E+K K +E+++E+ ++KK++K+K++++ + K E++++ ++
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313
Query: 259 KKKKKEKKK 267
K++KK+ +K
Sbjct: 314 KERKKQARK 322
Score = 48.0 bits (115), Expect = 2e-06
Identities = 19/69 (27%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKK---KKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E ++ K +++E++K K E++++ ++KK+EKKK+++E K K ++++K ++
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313
Query: 261 KKKEKKKKK 269
K+++K+ +K
Sbjct: 314 KERKKQARK 322
Score = 39.5 bits (93), Expect = 0.001
Identities = 16/50 (32%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEE--KKEEKKKEKKKEKKKEKK 220
K ++ER+++ + K++ K+K+E E K + +E++K E+K+ KK+ +K
Sbjct: 273 LKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 39.2 bits (92), Expect = 0.001
Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKK---KEKKKEKKKEKKKKEKK 225
K + + R+ + + KKEE++KEE + + K +E++K ++KE+KK+ +K
Sbjct: 271 KILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 37.6 bits (88), Expect = 0.005
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEE--KKKEKKKKKKKKEKKKKKDEGRRR 275
+ K K ++++E+K K +++++EE +KKE+KKK++++ K K +R
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQR 309
Score = 31.8 bits (73), Expect = 0.30
Identities = 11/52 (21%), Positives = 32/52 (61%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + +K +K ++++E+K K +++ +++ ++KKE+KKK++ +
Sbjct: 249 ANLKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKL 300
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 53.2 bits (128), Expect = 1e-08
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 189 KRKRKKEEEEKEEEKKE-EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K+K+K+ EE E+ KKE E+K++ K +KKK KKKK+K K+KK KK K +KK +KE +
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Query: 248 KKEEKKKEKKKKKKKKEKKKKKD 270
K E+ K + + K +
Sbjct: 121 KLEDLTKSYSETLSTLSELKPRK 143
Score = 52.8 bits (127), Expect = 2e-08
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E ++K++E EE +K KK+ ++K+K K +KKK KKKK K K +K KK +K +KK+EK+
Sbjct: 58 TEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKE 117
Query: 254 KEKKKKKKKKEKKKKKD 270
E K + K +
Sbjct: 118 AEDKLEDLTKSYSETLS 134
Score = 52.8 bits (127), Expect = 2e-08
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E + ++KK+E +E +K KK+ ++K++ K +KKK KKKK + K KK +KK K EKK
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114
Query: 255 EKKKKKKKKEKKKKKDEG 272
EK+ + K ++ K E
Sbjct: 115 EKEAEDKLEDLTKSYSET 132
Score = 50.8 bits (122), Expect = 8e-08
Identities = 28/83 (33%), Positives = 52/83 (62%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+KK++E EE +K +K+ E+K++ K +KKK +KKK+K K KK K+ K +K+ +K+ E+
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Query: 252 KKKEKKKKKKKKEKKKKKDEGRR 274
K ++ K + + + R+
Sbjct: 121 KLEDLTKSYSETLSTLSELKPRK 143
Score = 49.3 bits (118), Expect = 2e-07
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KK+++E EE ++ KK+ ++K+K K KKKK KKK+ K K KK +K K ++K +K+ E
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Query: 253 KKEKKKKKKKKEKKKKKDEGRRR 275
K E K + + R+
Sbjct: 121 KLEDLTKSYSETLSTLSELKPRK 143
Score = 48.9 bits (117), Expect = 4e-07
Identities = 25/83 (30%), Positives = 51/83 (61%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+++K++ + E+ +KE E+K++ K +KKK KKK+ K K+KK +KK K +KK++K+ +
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Query: 244 EKKKKKEEKKKEKKKKKKKKEKK 266
+ + + + + K +K
Sbjct: 121 KLEDLTKSYSETLSTLSELKPRK 143
Score = 45.8 bits (109), Expect = 5e-06
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Y KK++++ K K++ EE++K + KK++ KK+K K+K K+ KK+ K EKK +K
Sbjct: 57 YTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEK 116
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+ + + + K + + K +K
Sbjct: 117 EAEDKLEDLTKSYSETLSTLSELKPRK 143
Score = 32.4 bits (74), Expect = 0.15
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
E KKKKK+ E+ +K K++ ++K++ K +KKK KKKK+K K K + +
Sbjct: 58 TEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDK 105
Score = 29.7 bits (67), Expect = 1.2
Identities = 19/94 (20%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
EY K K ++K+ ++K+ + + K++++K+++ +++ +KE + + + K +
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTL 136
Query: 230 KKKKKKKEKKKK-----KKEKKKKKEEKKKEKKK 258
+ K +K K + ++K++ E KKE ++
Sbjct: 137 SELKPRKYALHKDIYQSRLDRKRRAEVAKKEAEE 170
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 54.5 bits (131), Expect = 2e-08
Identities = 30/101 (29%), Positives = 68/101 (67%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+++ ++Q + ++K+K++K +EE ++ K +E+ KEK+ K+KEK+K++K +E + +++
Sbjct: 103 GKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+KK ++ + K + KK +KK KKK+ +E+K+++
Sbjct: 163 EKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREA 203
Score = 52.2 bits (125), Expect = 1e-07
Identities = 35/100 (35%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
KE K++ + ++ K+KK+E+ KEE K + K+E K +K+ K+KEK+KEKK ++
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK--EKRPPKEKEKEKEKKVEEP 157
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ +E++KK++ + K KK KKK KK++ ++++ R
Sbjct: 158 RDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQR 197
Score = 51.4 bits (123), Expect = 2e-07
Identities = 38/96 (39%), Positives = 65/96 (67%), Gaps = 3/96 (3%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK---KEKKKKEKKKEKKKKKKKKKEK 238
K + K + +EEEKE+E+ +E+KK+KK++ K K++K KE+ KEK+ K+K+KEK
Sbjct: 91 KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+KK +E + ++EEKK+E+ + K + +K KK +
Sbjct: 151 EKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNK 186
Score = 49.9 bits (119), Expect = 6e-07
Identities = 30/87 (34%), Positives = 63/87 (72%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ + +E + E K+EEK+KE+ KE+KK+KK+K K++ K +K K++ ++K+ KEK+
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKE 147
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K+KE+K +E + ++++K++++ + + R
Sbjct: 148 KEKEKKVEEPRDREEEKKRERVRAKSR 174
Score = 49.9 bits (119), Expect = 6e-07
Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K + K K + K+E+++K+E+ KEE K K KE+ KEK+ K+KEK+K+KK ++
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP-KEKEKEKEKKVEE 156
Query: 237 EKKK---KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ + KK+E+ + K KK KKK K+K+ ++E
Sbjct: 157 PRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEE 194
Score = 49.5 bits (118), Expect = 9e-07
Identities = 31/89 (34%), Positives = 62/89 (69%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
++ ++ K K + KE K + K+E+K++++ KE+KK+KK+K K++ + +K K+E
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K+K+ K+KEK+K+KK +E + +++E +R
Sbjct: 138 KEKRPPKEKEKEKEKKVEEPRDREEEKKR 166
Score = 48.3 bits (115), Expect = 2e-06
Identities = 30/85 (35%), Positives = 55/85 (64%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
KR ++ K K + KE K E KE++K++++ +++KKKKK+K K++ K K K++
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Query: 251 EKKKEKKKKKKKKEKKKKKDEGRRR 275
++K+ K+K+K+KEKK ++ R
Sbjct: 138 KEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 48.3 bits (115), Expect = 2e-06
Identities = 30/87 (34%), Positives = 61/87 (70%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K K + KE + + K++EK+KE+ KE+KKK+K+K K++ K +K +++ K+K K+
Sbjct: 86 KGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKE 145
Query: 249 KEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KE++K++K ++ + +E++KK++ R +
Sbjct: 146 KEKEKEKKVEEPRDREEEKKRERVRAK 172
Score = 47.2 bits (112), Expect = 4e-06
Identities = 31/89 (34%), Positives = 60/89 (67%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
KR K + + + +E K E KE++KEK++ +++K+KKK+K K++ K +K KE+
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+K K+++K+K+KK E+ + ++E ++R
Sbjct: 138 KEKRPPKEKEKEKEKKVEEPRDREEEKKR 166
Score = 47.2 bits (112), Expect = 5e-06
Identities = 28/98 (28%), Positives = 57/98 (58%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KE K R+ K + K K+ +EKE+EK+++ ++ + +E++K++++ K KK KKK
Sbjct: 124 PKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKP 183
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KKK+ +++K+ + +E K K ++ ++ E
Sbjct: 184 PNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEE 221
Score = 46.8 bits (111), Expect = 7e-06
Identities = 30/102 (29%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +K + + + RK K + K++ KE+EK++EKK E+ +++++E KK+E+ + K + KK
Sbjct: 119 KKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEE-KKRERVRAKSRPKK 177
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+K KK++ ++E++++ ++ K K ++ +E R +
Sbjct: 178 PPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREK 219
Score = 46.4 bits (110), Expect = 8e-06
Identities = 27/98 (27%), Positives = 58/98 (59%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE K++R ++++++KE++ +E +EE+KK ++ K KK KKK KKK+ +E
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEE 193
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K+++ ++ K + ++ ++++KE+ KD
Sbjct: 194 EKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTT 231
Score = 44.5 bits (105), Expect = 3e-05
Identities = 25/92 (27%), Positives = 53/92 (57%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K KE+R + +++++++K EE EE+K+ ++ K KK KKK K+K+ ++
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEE 193
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+K+ + ++ K K +E E+++K++ K
Sbjct: 194 EKQRQAAREAVKGKPEEPDVNEEREKEEDDGK 225
Score = 43.3 bits (102), Expect = 7e-05
Identities = 28/85 (32%), Positives = 55/85 (64%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K +E K EK K K + KE K + K+E+K+K++ K+EKKKKK++ K++ +
Sbjct: 70 KLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Query: 251 EKKKEKKKKKKKKEKKKKKDEGRRR 275
++K +++ K+K+ K+K+K++ ++
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 41.4 bits (97), Expect = 3e-04
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ + +E K +K K K K KE K E K+++K+KE+ K++K+KKK+K +++
Sbjct: 68 ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Query: 254 KEKKKKKKKKEKKKKKDEGRR 274
+ +K K++ ++K+ E +
Sbjct: 128 PKDRKPKEEAKEKRPPKEKEK 148
Score = 40.6 bits (95), Expect = 6e-04
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEK---KKEKKKEKKKKEKKKEKKKKKK 233
K++R + + K K K+ +E ++EEEKK E+ + K KK KK+ K+K+ +++K++
Sbjct: 138 KEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQR 197
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + K K ++ E++++++ K +E E
Sbjct: 198 QAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDES 239
Score = 37.6 bits (87), Expect = 0.006
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +KE++ + + + EEEK+ E+ K + KK KKK KK++ E++K+++
Sbjct: 146 KEKEKEKKVE-------EPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQ 198
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+E K K E+ EE++KE+ K ++ +E R
Sbjct: 199 AAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESR 240
Score = 37.2 bits (86), Expect = 0.007
Identities = 19/98 (19%), Positives = 52/98 (53%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K ++ R ++ +KR+R R K +K +KK KK++ E++K+++ + + K ++
Sbjct: 152 KKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEP 211
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+++K+++ K +E ++ + ++ + +
Sbjct: 212 DVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRS 249
Score = 37.2 bits (86), Expect = 0.008
Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 177 KKERRKQRRRKRKRKR---KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+KE+ K+++ + R R KK E + + + ++ K+K KKKE ++EK+++ ++
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAV 204
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K K ++ E+++K+E+ K+++ E+ + +
Sbjct: 205 KGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEIS 246
Score = 32.2 bits (73), Expect = 0.26
Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
++R ++++R+R R K KK KKK K+K+ +++K+++ ++ K
Sbjct: 154 VEEPRDREEEKKRERVR-------AKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKG 206
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K +E ++ +K++ + K +E ++++ ++ E RR
Sbjct: 207 KPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRR 248
Score = 30.6 bits (69), Expect = 1.1
Identities = 17/99 (17%), Positives = 47/99 (47%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + R ++ K+K KK+E +EE++++ ++ K + ++ +E++KE+ K ++
Sbjct: 170 RAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRET 229
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++++ ++ E + KK + R
Sbjct: 230 TTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETR 268
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 53.6 bits (130), Expect = 4e-08
Identities = 34/106 (32%), Positives = 61/106 (57%), Gaps = 11/106 (10%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKE-EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K K + + + KR EE +KE E K+E E K+E K + + EK+ +++ + +K
Sbjct: 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQK 86
Query: 236 KEKK--------KKKKEKKKKKEEK--KKEKKKKKKKKEKKKKKDE 271
EK+ +K E +K+EE+ KKEK+ ++K++E +KK++E
Sbjct: 87 LEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
Score = 53.2 bits (129), Expect = 5e-08
Identities = 26/91 (28%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KKE + + + + R + E+E E + E +K EK+ +K+E ++K E +K++++
Sbjct: 55 KKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEE--NLDRKLELLEKREEEL 112
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
EKK+K+ E+K+++ EKK+E+ ++ +++ ++
Sbjct: 113 EKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 47.9 bits (115), Expect = 2e-06
Identities = 23/93 (24%), Positives = 59/93 (63%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
++ + +K KEE K + E++ +E++ E +K +K+ +K+E +K + EK
Sbjct: 48 KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK 107
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++++ EKK+K+ E+K+++ +KK+++ ++ +++
Sbjct: 108 REEELEKKEKELEQKQQELEKKEEELEELIEEQ 140
Score = 46.3 bits (111), Expect = 7e-06
Identities = 20/80 (25%), Positives = 51/80 (63%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K R + + R+R+ + ++ EK +KEE K + +K +++ EKK+++ ++K+++
Sbjct: 67 HKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL 126
Query: 237 EKKKKKKEKKKKKEEKKKEK 256
EKK+++ E+ +++ ++ E+
Sbjct: 127 EKKEEELEELIEEQLQELER 146
Score = 45.5 bits (109), Expect = 1e-05
Identities = 30/99 (30%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKE---KKKEKKKEKKKK-EKKKEKKKKKKKKKEKKK 240
R+K + KE EE+ + EE KKE KKE E K++ K + + +K+ +++ +
Sbjct: 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNEL 84
Query: 241 KKKEKK-KKKEE---KKKEKKKKKKKKEKKKKKDEGRRR 275
+K EK+ +KEE +K E +K++++ +KK+K+ +++
Sbjct: 85 QKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQ 123
Score = 41.7 bits (99), Expect = 3e-04
Identities = 27/115 (23%), Positives = 61/115 (53%), Gaps = 29/115 (25%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ERR + ++ KR +KEE + + EK++E+ ++K+KE ++K+++ EKK+++ ++
Sbjct: 78 RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI 137
Query: 238 KKKKKK--------------------EKK---------KKKEEKKKEKKKKKKKK 263
+++ ++ E++ K+ EE+ KE+ KK K+
Sbjct: 138 EEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKE 192
Score = 30.1 bits (69), Expect = 1.4
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 22/86 (25%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK-----------------EKKKEK 219
K+E +++ K ++++E E+KEEE +E +++ ++ EK +E+
Sbjct: 107 KREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEE 166
Query: 220 KKKE-----KKKEKKKKKKKKKEKKK 240
+ E K+ E++ K++ K+ K+
Sbjct: 167 ARHEAAVLIKEIEEEAKEEADKKAKE 192
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 53.7 bits (129), Expect = 4e-08
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
E + EKK ++E +++KKK+EK KEK+ KK K +K+ K K + ++ + KK +K
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEK 64
Query: 262 KKEKKKKKDE 271
K K+ +DE
Sbjct: 65 KSRKRDVEDE 74
Score = 50.7 bits (121), Expect = 4e-07
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK---KEEKKK 254
E E EKK ++E +++KKKE+K KE KE KK K +KE K K + ++ KK
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKE--KELKKLKAAQKEAKAKLQAQQASDGTNVPKKS 62
Query: 255 EKKKKKKKKEKKKKKD 270
EKK +K+ E + +D
Sbjct: 63 EKKSRKRDVEDENPED 78
Score = 49.5 bits (118), Expect = 1e-06
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ + E E+K ++E ++K+KK+EK KEK+ K+ K +K+ K K + ++ KK
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 250 EEKKKEKK 257
EKK K+
Sbjct: 62 SEKKSRKR 69
Score = 46.8 bits (111), Expect = 7e-06
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 185 RRKRKRKRKKEEEEKEEE---KKEEKKKEK--KKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R KK E+E E KKEEK KEK KK K +K+ K K + ++ KK
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 240 KKKKEKKKKKEEKKKE 255
+KK +K+ E++ E
Sbjct: 62 SEKKSRKRDVEDENPE 77
Score = 45.3 bits (107), Expect = 2e-05
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK-KKKEKKKEKKKKKKKKKEKKKKK 242
R + + ++K EE+ E KK++++K K+KE KK K +KE K + + ++ KK
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 243 KEKKKKKEEKKKE 255
EKK +K + + E
Sbjct: 62 SEKKSRKRDVEDE 74
Score = 44.1 bits (104), Expect = 5e-05
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ E K+ + + +RKK++EEK +EK E KK K +K+ + K + ++
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEK--ELKKLKAAQKEAKAKLQAQQASDGTNVP 59
Query: 234 KKKEKKKKKKEKKKKKEE 251
KK EKK +K++ + + E
Sbjct: 60 KKSEKKSRKRDVEDENPE 77
Score = 41.4 bits (97), Expect = 4e-04
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E + EKK +++ ++K+KK++K K+KE KK K +K+ K + + ++ KK +K
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEK 64
Query: 270 DEGRR 274
+R
Sbjct: 65 KSRKR 69
Score = 40.3 bits (94), Expect = 0.001
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++K E++ E+KKKK++K ++K+ KK K +KE K K + ++ KK E + R
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSR 67
Score = 39.5 bits (92), Expect = 0.002
Identities = 17/64 (26%), Positives = 38/64 (59%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +KK ++E +++KKK++K K+++ KK K +K+ + K + ++ KK + +
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
Query: 272 GRRR 275
R+R
Sbjct: 66 SRKR 69
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 53.8 bits (129), Expect = 4e-08
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK---KEKKKEKKKKKKKKKEKK 239
+ RR+ +EK++EK+++K + + KEK +KK+ + K++ ++ K
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLK 63
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ KK KEE K+ + K K+E +K+
Sbjct: 64 IADEVKKSTKEESKQLLEVLKTKEEHQKE 92
Score = 43.8 bits (103), Expect = 7e-05
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKE--------KKKEKKKKEKKKEK 228
++E + + K +++++K + +EK +KK+E KE+ +E K
Sbjct: 6 RREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIA 65
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ KK KE+ K+ E K KEE +KE + + +K
Sbjct: 66 DEVKKSTKEESKQLLEVLKTKEEHQKEIQYEILQK 100
Score = 40.7 bits (95), Expect = 7e-04
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE-KKKEKKKKKKKKKEKKKKKKEKK 246
R R+ ++ +EK EK+ +K + E K+K KK++ + +++
Sbjct: 4 RNRREANI-------NNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQ 56
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDE 271
+E K + KK KE+ K+ E
Sbjct: 57 SSQENLKIADEVKKSTKEESKQLLE 81
Score = 32.6 bits (74), Expect = 0.27
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKE-----KKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
KE+ +E K ++ K+ KE+ K+ K K+E +KE + + +K + KE
Sbjct: 53 VKEQSSQENLKIADEVKKSTKEESKQLLEVLKTKEEHQKEIQYEILQKTIPSFEPKESIL 112
Query: 248 KKEEKKKEKKKKKKKK 263
KK E K ++ KK+ K
Sbjct: 113 KKLEDIKPEQAKKQTK 128
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 52.5 bits (126), Expect = 7e-08
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
++++E KE KK + KK + K E ++ + K K+EK K++ E +KK++E+ E
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE-ENEKKQKEQADED 423
Query: 257 KKKKKKKEKKK 267
K+K++K E+KK
Sbjct: 424 KEKRQKDERKK 434
Score = 51.7 bits (124), Expect = 1e-07
Identities = 22/81 (27%), Positives = 48/81 (59%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K +E + + +++++ K+ KK + +K E K + +E + K KE+K K+E
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
E +K++K++ + ++K++KDE
Sbjct: 411 ENEKKQKEQADEDKEKRQKDE 431
Score = 51.3 bits (123), Expect = 2e-07
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK-KKKEKKKKKKEKKKKKEE 251
K++E KE KK + +K E K E E+ + K K++K K++E +KK+KE+ + +E
Sbjct: 366 KRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKE 425
Query: 252 KKKEKKKKK 260
K+++ ++KK
Sbjct: 426 KRQKDERKK 434
Score = 49.8 bits (119), Expect = 6e-07
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 187 KRKRKRKKEEEEKEEE---KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
++++ KE +K ++ K E K E ++ E K KE+K ++++ +KK+KE+ + K
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Query: 244 EKKKKKEEKK 253
EK++K E KK
Sbjct: 425 EKRQKDERKK 434
Score = 49.0 bits (117), Expect = 1e-06
Identities = 20/82 (24%), Positives = 47/82 (57%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ + K + +K++E KE K+ + KK + K++ ++ + K K++K K++
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 248 KKEEKKKEKKKKKKKKEKKKKK 269
+ E+K+KE+ + K+K +K ++
Sbjct: 411 ENEKKQKEQADEDKEKRQKDER 432
Score = 47.5 bits (113), Expect = 4e-06
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
EE K K+++ ++ K+ + KK + K E ++ + K KEEK K+++
Sbjct: 353 YEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEEN 412
Query: 259 KKKKKEKKKKKDEGRRR 275
+KK+KE+ + E R++
Sbjct: 413 EKKQKEQADEDKEKRQK 429
Score = 46.3 bits (110), Expect = 9e-06
Identities = 20/70 (28%), Positives = 47/70 (67%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
++R++ ++ +K + ++ E K E E+ + K KE+K K+++ EKK+K++ ++K
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Query: 239 KKKKKEKKKK 248
+K++K+++KK
Sbjct: 425 EKRQKDERKK 434
Score = 44.4 bits (105), Expect = 4e-05
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++E K+ +K + KK E K+E E+ + K KE EK K+E+ ++K+K++ +
Sbjct: 367 RQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKE---EKLKQEENEKKQKEQADED 423
Query: 237 EKKKKKKEKKK 247
++K++K E+KK
Sbjct: 424 KEKRQKDERKK 434
Score = 40.2 bits (94), Expect = 8e-04
Identities = 16/71 (22%), Positives = 44/71 (61%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
G K++ + K+ + K+ E ++E ++ E K +++K K+++ +KK+K++ +
Sbjct: 364 GDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADED 423
Query: 235 KKEKKKKKKEK 245
K++++K +++K
Sbjct: 424 KEKRQKDERKK 434
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 50.9 bits (122), Expect = 9e-08
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ E E + +K+ K +K+ E ++E+KK+KKKKKE KK+KKEKK KKE+ +
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVE 179
Query: 255 EKKKKKKKKEKKKK 268
K KKKKK+KKKK
Sbjct: 180 PKGSKKKKKKKKKK 193
Score = 49.3 bits (118), Expect = 3e-07
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E E + +K+ K +K+ + ++E+KKEKKKKK+ KKEKK+KK +K+K E K
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Query: 254 KEKKKKKKKK 263
+KKKKKKKK
Sbjct: 183 SKKKKKKKKK 192
Score = 46.2 bits (110), Expect = 4e-06
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ E E +KE K +K+ + +E++KKEKKK KK+ KK+KKEKK KK++ + K K
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKK-KKEVKKEKKEKKDKKEKMVEPKGSK 184
Query: 253 KKEKKKKKK 261
KK+KKKKKK
Sbjct: 185 KKKKKKKKK 193
Score = 45.9 bits (109), Expect = 5e-06
Identities = 29/64 (45%), Positives = 46/64 (71%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ E++ K E++ + +++EKK++KKKKE KKEKK+KK KK++ + K KKKKK+
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Query: 251 EKKK 254
+KKK
Sbjct: 190 KKKK 193
Score = 44.7 bits (106), Expect = 1e-05
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
K K E+E E E++E+K+K+KKKE KKEKK+K+ KKEK + K K+KKKKKK+K
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 44.3 bits (105), Expect = 1e-05
Identities = 32/61 (52%), Positives = 44/61 (72%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ K + EKE E +EE+KKEKKK+K+ +K+KKEKK +K+K + K KKKKKK+KK
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Query: 247 K 247
K
Sbjct: 193 K 193
Score = 41.2 bits (97), Expect = 2e-04
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+ + E +++ + +KE + ++++KKEKKKKK+ KK+KKE+K K++K +
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVE 179
Query: 261 KKKEKKKKKDEGRR 274
K KKKKK + ++
Sbjct: 180 PKGSKKKKKKKKKK 193
Score = 37.8 bits (88), Expect = 0.002
Identities = 21/66 (31%), Positives = 44/66 (66%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ + + +K+ K +K+ + +++EKK+KKK+K+ KKE+K+K+ KK+K + K KK
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Query: 270 DEGRRR 275
+ +++
Sbjct: 186 KKKKKK 191
Score = 36.6 bits (85), Expect = 0.007
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ + + +KE K +K+ E ++++K++KKKK+E KKEKK+KK KKEK +
Sbjct: 121 PDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEP 180
Query: 270 DEGRRR 275
+++
Sbjct: 181 KGSKKK 186
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 52.3 bits (125), Expect = 1e-07
Identities = 28/91 (30%), Positives = 60/91 (65%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
++ K++ +KEEE + KE K++EK+K+ ++E+ K K+E++ K + K +++
Sbjct: 250 EQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERR 309
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K +++K KE +K+ KK +K+ K++K++ +E
Sbjct: 310 KVDDEEKLKESEKELKKLEKELKKEKEEIEE 340
Score = 51.5 bits (123), Expect = 2e-07
Identities = 32/95 (33%), Positives = 57/95 (60%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ R + + + K+E EKEEE + KE K+E+K++K ++E+ K K++++ K
Sbjct: 241 DLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELK 300
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K + +K EEK KE +K+ KK EK+ KK++
Sbjct: 301 SELLKLERRKVDDEEKLKESEKELKKLEKELKKEK 335
Score = 49.2 bits (117), Expect = 1e-06
Identities = 26/95 (27%), Positives = 56/95 (58%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ + R + + E ++E EK+EE + KE K+E+K+K+ ++E+ K K++
Sbjct: 237 EERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEE 296
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+ K + K ++++ +EK K+ +K+ KK +K+
Sbjct: 297 EELKSELLKLERRKVDDEEKLKESEKELKKLEKEL 331
Score = 49.2 bits (117), Expect = 1e-06
Identities = 22/92 (23%), Positives = 56/92 (60%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K ++ ++ R ++EE + +++ EK++E + KE K++EK+K+ ++++ K
Sbjct: 234 KLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLA 293
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K++++ + + K E++K ++K K+ +K+ K
Sbjct: 294 KEEEELKSELLKLERRKVDDEEKLKESEKELK 325
Score = 48.0 bits (114), Expect = 3e-06
Identities = 28/94 (29%), Positives = 59/94 (62%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E K RRK + K +E EKE +K E++ K++K+E ++ +K+ ++ + K++ +++++
Sbjct: 300 KSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEE 359
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E+ +K +EK ++ EE+ KKK + ++ K
Sbjct: 360 EQLEKLQEKLEQLEEELLAKKKLESERLSSAAKL 393
Score = 46.1 bits (109), Expect = 1e-05
Identities = 25/95 (26%), Positives = 59/95 (62%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+E K+ + ++ +EEEKE++ +EE+ K KE+++ K + K + +K ++K
Sbjct: 258 KQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 317
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ +K+ +K +K+ +K+KE+ ++ +K+ K+ +
Sbjct: 318 KESEKELKKLEKELKKEKEEIEELEKELKELEIKR 352
Score = 45.7 bits (108), Expect = 1e-05
Identities = 30/95 (31%), Positives = 62/95 (65%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+E + K ++ +KE++ +EEE K K+E++ + + K ++ K +++K K+ +K
Sbjct: 263 KEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 322
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E KK +KE KK+KEE ++ +K+ K+ + K++ ++E
Sbjct: 323 ELKKLEKELKKEKEEIEELEKELKELEIKREAEEE 357
Score = 45.7 bits (108), Expect = 2e-05
Identities = 24/97 (24%), Positives = 63/97 (64%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE + + K +R+K ++E++ ++ E++ K+ +KE KKEK++ E+ +++ K+ + K+E
Sbjct: 294 KEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKRE 353
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+++++E+ +K +EK ++ +++ K+K + +
Sbjct: 354 AEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSA 390
Score = 45.7 bits (108), Expect = 2e-05
Identities = 19/100 (19%), Positives = 44/100 (44%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+ KK + +E + +E + KE+ KK + + KEK + E++
Sbjct: 172 KKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLD 231
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K E++ ++ + E+++ E K++ +KE++
Sbjct: 232 YLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQV 271
Score = 45.3 bits (107), Expect = 2e-05
Identities = 26/95 (27%), Positives = 63/95 (66%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+E + + + K +K +E++EEE+K KKE+++E+K E KEK+ ++++K +K
Sbjct: 728 VQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKL 787
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +++K+EK K +EE+ + +++ K++ + ++++
Sbjct: 788 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQ 822
Score = 44.2 bits (104), Expect = 5e-05
Identities = 21/97 (21%), Positives = 47/97 (48%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
G +E+RK++ R +K + E + EE K ++ K K++ KK E + K+K + +
Sbjct: 164 AGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELE 223
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ K ++ ++ + +++E + K E
Sbjct: 224 EENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE 260
Score = 44.2 bits (104), Expect = 5e-05
Identities = 17/93 (18%), Positives = 45/93 (48%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ K + + KE+ +K E + K+K + +E+ K E++ ++
Sbjct: 187 AELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQEL 246
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ ++++ + K+E +K+E+ + KE K+++
Sbjct: 247 LRDEQEEIESSKQELEKEEEILAQVLKENKEEE 279
Score = 44.2 bits (104), Expect = 5e-05
Identities = 26/95 (27%), Positives = 63/95 (66%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+++ ++ K K ++E + + + + K +++K K+ EK+ K+ +KE KK+K++ +
Sbjct: 280 KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIE 339
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E +K+ KE + K+E +++E+++ +K +EK ++ +E
Sbjct: 340 ELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEE 374
Score = 44.2 bits (104), Expect = 6e-05
Identities = 30/109 (27%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK-KKEKKK 226
E ++E K K +R++ +EE+ +E +KE KK EK+ +K+KE+ + EK+
Sbjct: 286 EEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKEL 345
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ + K++ +E+++++ EK ++K E+ +E+ KKK E ++ + +
Sbjct: 346 KELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 394
Score = 43.8 bits (103), Expect = 7e-05
Identities = 25/98 (25%), Positives = 62/98 (63%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ K+ + + K K+ +EEE K K+EE+ K + + ++ K E+K ++ +K+ KK E
Sbjct: 269 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLE 328
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+ KK++++ ++ EK+ ++ + K++ E+++++ + +
Sbjct: 329 KELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQ 366
Score = 43.0 bits (101), Expect = 1e-04
Identities = 27/102 (26%), Positives = 62/102 (60%), Gaps = 7/102 (6%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+++ R ++ + + K + +EKE ++EEK ++ K E++KE+K K +++E + +++ K
Sbjct: 753 EEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELK 812
Query: 237 EKKKKKKE-------KKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+ + +E ++K KEE+ +E + K+++K +K E
Sbjct: 813 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 854
Score = 42.6 bits (100), Expect = 1e-04
Identities = 25/94 (26%), Positives = 62/94 (65%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
++ ++ ++ + K +E+EE K E K E++K +EK K+ +K+ KK +K+ KKEK++
Sbjct: 279 EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEI 338
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ +K+ KE + K + +++++++ +K +++ +
Sbjct: 339 EELEKELKELEIKREAEEEEEEQLEKLQEKLEQL 372
Score = 42.3 bits (99), Expect = 2e-04
Identities = 21/103 (20%), Positives = 50/103 (48%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
K KKER K+ + + + + +E + +E K KE+ K+ + + KEK + +
Sbjct: 164 AGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELE 223
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ K ++ +E + E+++ + K++ +K++E
Sbjct: 224 EENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEE 266
Score = 42.3 bits (99), Expect = 2e-04
Identities = 30/100 (30%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK-KKEKKKKEKKKEKKKKKKKK 235
K + ++ +K +++ KKE+EE EE +KE K+ E K+E ++E+++ EK +EK ++ +++
Sbjct: 316 KLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEE 375
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KKK + ++ K KE++ + K +E+K+ K
Sbjct: 376 LLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELS 415
Score = 42.3 bits (99), Expect = 2e-04
Identities = 25/94 (26%), Positives = 61/94 (64%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K + + ++K K K+EEEEK KKEE+++EK + KEK+ E++++ +K K +++
Sbjct: 733 DKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEE 792
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+++K K ++++ + +++ K++ + +E++ +
Sbjct: 793 KEEKLKAQEEELRALEEELKEEAELLEEEQLLIE 826
Score = 42.3 bits (99), Expect = 2e-04
Identities = 27/94 (28%), Positives = 63/94 (67%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK + ++ + K + + + E + E+++ +EK KE +KE KK EK+ +K+K++ ++
Sbjct: 282 KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEEL 341
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
EK+ K+ E K++ EE+++E+ +K ++K ++ +++
Sbjct: 342 EKELKELEIKREAEEEEEEQLEKLQEKLEQLEEE 375
Score = 41.9 bits (98), Expect = 3e-04
Identities = 21/95 (22%), Positives = 48/95 (50%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + K + + EE ++ + ++++ E K+E +KE++ + K
Sbjct: 214 YQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLK 273
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E K+++KEKK ++EE K K++++ K + K +
Sbjct: 274 ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 308
Score = 41.9 bits (98), Expect = 3e-04
Identities = 23/93 (24%), Positives = 57/93 (61%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
E + + K +K +KE ++++EE +E +K+ K+ E K+E +++E+++ +K ++K ++
Sbjct: 312 DDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQ 371
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+++ +KK + E K K+++ E K ++
Sbjct: 372 LEEELLAKKKLESERLSSAAKLKEEELELKNEE 404
Score = 41.1 bits (96), Expect = 6e-04
Identities = 14/95 (14%), Positives = 48/95 (50%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ E + + + +E + KE+ KK + + K++ + E++ K +++
Sbjct: 182 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERID 241
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ ++++++ E K+E +K+++ + K+++
Sbjct: 242 LLQELLRDEQEEIESSKQELEKEEEILAQVLKENK 276
Score = 40.7 bits (95), Expect = 7e-04
Identities = 23/94 (24%), Positives = 60/94 (63%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
++E + + + + K + + E+ + EEK KE +KE KK +K+ +K+KE+ ++ +K+
Sbjct: 285 QEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKE 344
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ + K+E ++++EE+ ++ ++K ++ E++
Sbjct: 345 LKELEIKREAEEEEEEQLEKLQEKLEQLEEELLA 378
Score = 40.3 bits (94), Expect = 0.001
Identities = 27/104 (25%), Positives = 64/104 (61%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
E K ++ + + ++ K +++ ++ +E + K ++ + ++K KEK+++E+K
Sbjct: 698 RQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSR 757
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KK+++++++ + KEK+ +EE+K EK K +++KE+K K E
Sbjct: 758 LKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQE 801
Score = 39.6 bits (92), Expect = 0.001
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K E E EE EE +++K+E KE++++ K+ K++ E ++K+E
Sbjct: 930 ILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEE 989
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
K++ KK++ +E+KK+
Sbjct: 990 RYNKDELKKERLEEEKKELLR 1010
Score = 39.6 bits (92), Expect = 0.002
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E + +++ K E E+EE+ +E+KKE+ K ++ ++ E K+ K ++K++
Sbjct: 396 EELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEE-L 454
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K+ K K K E KK E K+ K K ++ E
Sbjct: 455 EKQALKLLKDKLELKKSEDLLKETKLVKLLEQLE 488
Score = 39.6 bits (92), Expect = 0.002
Identities = 23/88 (26%), Positives = 45/88 (51%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
E +Q K ++K+E + EE ++ + K+ K ++KE+ +K+ K K K + KK
Sbjct: 411 LLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKK 470
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ K+ K K E+ + ++K +E
Sbjct: 471 SEDLLKETKLVKLLEQLELLLLRQKLEE 498
Score = 39.2 bits (91), Expect = 0.002
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K +R+ E EE+ +E++KK+++ +K E+ + + ++ K +E K K++ KK
Sbjct: 151 MKPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKA 210
Query: 248 KKEEKKKEKKKKKKKKEKKKKK 269
+ + KEK + +++
Sbjct: 211 LEYYQLKEKLELEEENLLYLDY 232
Score = 38.8 bits (90), Expect = 0.003
Identities = 20/88 (22%), Positives = 45/88 (51%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ ++ ++ K+++ + +E E+ E K+ K E+K+E +K+ K K K + KK
Sbjct: 412 LELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKS 471
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E K+ + K E+ + ++K ++
Sbjct: 472 EDLLKETKLVKLLEQLELLLLRQKLEEA 499
Score = 38.4 bits (89), Expect = 0.003
Identities = 24/95 (25%), Positives = 63/95 (66%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK + ++ + ++ +++ EE K E+K ++K+E++++ + K++++E++K + K
Sbjct: 714 KKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLK 773
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
EK+ ++E+K +K + ++EK++K K +E++ + E
Sbjct: 774 EKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALE 808
Score = 38.4 bits (89), Expect = 0.004
Identities = 23/96 (23%), Positives = 58/96 (60%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K E+ ++ ++ + +KE +E E +++ E+++E++ EK +EK ++ +++ KKK +
Sbjct: 325 KKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLES 384
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K K+++ E K +E+K+ K E +++++
Sbjct: 385 ERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEED 420
Score = 38.4 bits (89), Expect = 0.004
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEK-KKEKKKEKKKKEKKK 226
LE + K+ + +++ KEE+++E + EE ++ K+ K ++K+E +K
Sbjct: 397 ELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEK 456
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+ K K K E KK + K+ K K E+ + ++K
Sbjct: 457 QALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKL 496
Score = 38.0 bits (88), Expect = 0.005
Identities = 23/95 (24%), Positives = 53/95 (55%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+E +++ K + K ++ EEE +KK E ++ K KE++ + K +E+K+ K +
Sbjct: 354 AEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLE 413
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++++ K++K+E+ K ++ ++ E K+ K
Sbjct: 414 LSEQEEDLLKEEKKEELKIVEELEESLETKQGKLT 448
Score = 37.6 bits (87), Expect = 0.006
Identities = 22/87 (25%), Positives = 46/87 (52%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ K++ + EE E+ E K+ K E+K+E +K+ K K K + KK + ++ K
Sbjct: 422 LKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLV 481
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K ++ + ++K ++ +KE K ++
Sbjct: 482 KLLEQLELLLLRQKLEEASQKESKARE 508
Score = 36.5 bits (84), Expect = 0.014
Identities = 18/84 (21%), Positives = 45/84 (53%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ ++ K K + KEEEE+ ++ K+E + E+K+E+ K + KK
Sbjct: 939 EELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKK 998
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKK 260
E+ +++K++ ++ ++ ++ K+
Sbjct: 999 ERLEEEKKELLREIIEETCQRFKE 1022
Score = 36.5 bits (84), Expect = 0.015
Identities = 14/85 (16%), Positives = 38/85 (44%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+R ++ ++E + +EK++ K E KKE+ +++KK+ ++ ++ ++
Sbjct: 960 EERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQR 1019
Query: 248 KKEEKKKEKKKKKKKKEKKKKKDEG 272
KE + + + + G
Sbjct: 1020 FKEFLELFVSINRGLNKVFFYLELG 1044
Score = 34.9 bits (80), Expect = 0.042
Identities = 16/82 (19%), Positives = 39/82 (47%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+E+ +K+E K+ ++ + + ++ K +E K K++ KK + + ++K + EE+
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Query: 254 KEKKKKKKKKEKKKKKDEGRRR 275
K E++ + R
Sbjct: 227 LLYLDYLKLNEERIDLLQELLR 248
Score = 34.6 bits (79), Expect = 0.062
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 191 KRKKEEEEKEEEKKEEK--KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ K+E EE+EEE+ E+ K E+ +E+ KKK E ++ K K++E + K +E+K+
Sbjct: 349 EIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEA 408
Query: 249 KEEKKKEKKKKKKKKEKKKKKDEGR 273
K + ++++ KE+KK++ +
Sbjct: 409 KLLLELSEQEEDLLKEEKKEELKIV 433
Score = 33.8 bits (77), Expect = 0.092
Identities = 11/82 (13%), Positives = 38/82 (46%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+++EEE + +++ + ++++++ K + KK++ +++KK+ ++ E
Sbjct: 955 NKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIE 1014
Query: 251 EKKKEKKKKKKKKEKKKKKDEG 272
E + K+ + +
Sbjct: 1015 ETCQRFKEFLELFVSINRGLNK 1036
Score = 32.6 bits (74), Expect = 0.22
Identities = 16/98 (16%), Positives = 44/98 (44%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+ E + KE ++R ++ +++ E ++KE++ K + KK++ +++
Sbjct: 945 EADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEE 1004
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+K+ ++ +E ++ KE + + K E
Sbjct: 1005 KKELLREIIEETCQRFKEFLELFVSINRGLNKVFFYLE 1042
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 51.6 bits (124), Expect = 2e-07
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ +E+EE EE++ ++++ K K K K K ++ K +KK+KKKKK K KK
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGN 1197
Query: 250 EEKKKEKKKKKKKKEKKKKKDEG 272
++ +K+K + KK
Sbjct: 1198 SKRVDSDEKRKLDDKPDNKKSNS 1220
Score = 49.7 bits (119), Expect = 1e-06
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 195 EEEEKEEEK---KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
EE+E+ EEK KE++ K K K K + +K + KK++KKKKK +K KK K
Sbjct: 1142 EEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRV 1201
Query: 252 KKKEKKKKKKKKEKKKKKDEG 272
EK+K K + KK G
Sbjct: 1202 DSDEKRKLDDKPDNKKSNSSG 1222
Score = 48.9 bits (117), Expect = 1e-06
Identities = 25/134 (18%), Positives = 43/134 (32%)
Query: 138 KDGSLPSCGCSRTARPKDLKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEE 197
K E D+L K +R + K +
Sbjct: 1234 KPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPD 1293
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+ + KKK KK+ + K+KKK +KK KKK K K+ +
Sbjct: 1294 GESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLL 1353
Query: 258 KKKKKKEKKKKKDE 271
++ +KK+ ++
Sbjct: 1354 RRPRKKKSDSSSED 1367
Score = 48.1 bits (115), Expect = 2e-06
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 177 KKERRKQRRRKRKRKRK------KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
E K+ + K K E+ +K EE EE+++ ++KE KE++ K K K K
Sbjct: 1108 NAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKAS 1167
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K +K K KKK+KK+KK ++ KK K+ +K + +
Sbjct: 1168 KLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDK 1212
Score = 47.0 bits (112), Expect = 6e-06
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+ EE+E +E++ K K K K K K K +KK++KKKK K KK K+ +
Sbjct: 1145 EEVEEKEIAKEQRL-KSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDS 1203
Query: 252 KKKEKKKKKKKKEKKKKKD 270
+K K K +K
Sbjct: 1204 DEKRKLDDKPDNKKSNSSG 1222
Score = 46.6 bits (111), Expect = 1e-05
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ K E E+KE+E ++ K K ++ K E+ E++++ ++K+ K+++ + K
Sbjct: 1103 KVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKT 1162
Query: 248 KKEEKKKEKKKKKKKKEKKKKKD 270
K + K K K KKK++KKKK
Sbjct: 1163 KGKASKLRKPKLKKKEKKKKKSS 1185
Score = 45.0 bits (107), Expect = 3e-05
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E +++ +++ KE+ K + K + K K K KKKEKKKK+ +K KK
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGN 1197
Query: 238 KKKKKKEKKKKKEEKKKEKKKKK 260
K+ ++K+K ++K KK
Sbjct: 1198 SKRVDSDEKRKLDDKPDNKKSNS 1220
Score = 44.7 bits (106), Expect = 4e-05
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 5/104 (4%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKK-----EEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+ + KE + K K+ K+ + + KKK
Sbjct: 1250 SSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKK 1309
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK+ E +KKKK E+K KKK K + ++ R
Sbjct: 1310 VKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLL 1353
Score = 43.9 bits (104), Expect = 6e-05
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE+ ++ + ++K K+ E+ K K+ ++ K ++ ++++E ++++ K+++ K
Sbjct: 1101 KEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKS 1160
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K K K K +K + KKKEKKKKK +K KK
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNS 1198
Score = 43.1 bits (102), Expect = 1e-04
Identities = 23/99 (23%), Positives = 48/99 (48%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ E ++ + +R + + K + K + K +KK++KKK+ +K KK K+ +
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDE 1205
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++K K KK +++ +++K K KK R +
Sbjct: 1206 KRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLK 1244
Score = 43.1 bits (102), Expect = 1e-04
Identities = 22/109 (20%), Positives = 39/109 (35%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+N + + ++ K K + + K E K K
Sbjct: 1248 NNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTK 1307
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K KK+ + KKK+K +KK +KK+ K + K+ + RR
Sbjct: 1308 KKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRP 1356
Score = 36.2 bits (84), Expect = 0.016
Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 10/131 (7%)
Query: 151 ARPKDLKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKE 210
D K+ G ++ E KK K+ + K+ K E+ E + K+
Sbjct: 1210 DDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEG 1269
Query: 211 KKKEKKK------EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK- 263
K K K K+ + K KK+ KK+ E KKKKK +
Sbjct: 1270 KPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEK 1329
Query: 264 ---EKKKKKDE 271
KKK K
Sbjct: 1330 KTARKKKSKTR 1340
Score = 35.8 bits (83), Expect = 0.023
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K+K KK E K++KK EKK +KK+ K + K+ + + + +KKK + +
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
Query: 249 KEEKKKEKKKKKKKKEKKKKKD 270
++ + + + E + D
Sbjct: 1367 DDDDSEVDDSEDEDDEDDEDDD 1388
Score = 35.4 bits (82), Expect = 0.033
Identities = 18/78 (23%), Positives = 36/78 (46%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K++ +K E K+KKK +KK +KK+ K K+ + + ++ KKK +
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
Query: 254 KEKKKKKKKKEKKKKKDE 271
+ + E + +D+
Sbjct: 1367 DDDDSEVDDSEDEDDEDD 1384
Score = 33.9 bits (78), Expect = 0.10
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KK+ +++ E KK+KK EKK +KKK K + K+ + ++ ++KK +
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
Query: 253 KKEKKKKKKKKEKKKKKDE 271
+ + +++ + DE
Sbjct: 1367 DDDDSEVDDSEDEDDEDDE 1385
Score = 33.9 bits (78), Expect = 0.11
Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 2/124 (1%)
Query: 154 KDLKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEK--KKEK 211
D G + E + K ++ +R + +K + ++ ++ KE
Sbjct: 1210 DDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEG 1269
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + ++ + K+ E K K++ KK + +KKKK ++
Sbjct: 1270 KPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEK 1329
Query: 272 GRRR 275
R
Sbjct: 1330 KTAR 1333
Score = 33.5 bits (77), Expect = 0.14
Identities = 17/82 (20%), Positives = 39/82 (47%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+K+ K+ E ++KKK +KK +K+K K K+ + + + +KKK +
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
Query: 250 EEKKKEKKKKKKKKEKKKKKDE 271
++ E + + ++ + D+
Sbjct: 1367 DDDDSEVDDSEDEDDEDDEDDD 1388
Score = 33.1 bits (76), Expect = 0.16
Identities = 16/91 (17%), Positives = 42/91 (46%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
GG K +++ +KR K+++K E+K KKK K + K+ + + ++
Sbjct: 1297 NGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRP 1356
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+KK+ ++ + + +++ + + +
Sbjct: 1357 RKKKSDSSSEDDDDSEVDDSEDEDDEDDEDD 1387
Score = 30.8 bits (70), Expect = 0.89
Identities = 14/82 (17%), Positives = 40/82 (48%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K+K ++ + +KKK+ +K+ ++KK K + K+ + + ++ +KK+ E
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
Query: 251 EKKKEKKKKKKKKEKKKKKDEG 272
+ + + ++ + +D+
Sbjct: 1367 DDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 51.1 bits (123), Expect = 2e-07
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 1/94 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE K+ +K+ ++ ++ K + E KKK + K K +
Sbjct: 35 KEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAA-KAAAAKAPAK 93
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KK K + KK EKK K K
Sbjct: 94 KKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVL 127
Score = 51.1 bits (123), Expect = 2e-07
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK-------KKEKKKKEKKKEKK 229
KK ++ + K K KEE ++ E K++ ++ + K E KK
Sbjct: 18 KKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKK 77
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K K K KKK K+E KK +KK K
Sbjct: 78 KTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLN 119
Score = 49.6 bits (119), Expect = 7e-07
Identities = 19/95 (20%), Positives = 36/95 (37%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KE + +++ ++ + K + E KKK K + K KKK K
Sbjct: 38 IKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLK 97
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ K+ +KK K + K + + D+
Sbjct: 98 DELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADD 132
Score = 49.2 bits (118), Expect = 1e-06
Identities = 16/96 (16%), Positives = 36/96 (37%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K + + ++ ++ + +++ E+ + K + + +KK K K
Sbjct: 26 KSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKA 85
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K +KK K E +K +KK +K +
Sbjct: 86 AAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Score = 48.5 bits (116), Expect = 2e-06
Identities = 19/95 (20%), Positives = 33/95 (34%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ ++K + + K+ + E KKK K K K KKK K +
Sbjct: 42 LESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELD 101
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KK +K+ K++ K + D+
Sbjct: 102 SSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDD 136
Score = 48.1 bits (115), Expect = 2e-06
Identities = 22/96 (22%), Positives = 32/96 (33%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K K + K + KK+ E+ ++ K + KKK K K
Sbjct: 26 KSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKA 85
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ KKK K + KK EKK K +
Sbjct: 86 AAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Score = 46.9 bits (112), Expect = 6e-06
Identities = 20/95 (21%), Positives = 37/95 (38%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + K+K KK + + + K++ K+ + K+K ++ + K
Sbjct: 5 STKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVK 64
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ + KK+ K K K KKK KDE
Sbjct: 65 DTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDE 99
Score = 46.5 bits (111), Expect = 7e-06
Identities = 17/86 (19%), Positives = 33/86 (38%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ + + +E+ +E E KKK ++ + K+ + KKK K K
Sbjct: 25 AKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAK 84
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEG 272
+ +KK K + KK + +
Sbjct: 85 AAAAKAPAKKKLKDELDSSKKAEKKN 110
Score = 45.4 bits (108), Expect = 2e-05
Identities = 20/94 (21%), Positives = 39/94 (41%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ ++K ++ K K K ++E ++ E KK+ ++ + + +
Sbjct: 14 EEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESD 73
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KKK K K K KKK K + + KK +
Sbjct: 74 IPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAE 107
Score = 45.0 bits (107), Expect = 3e-05
Identities = 19/95 (20%), Positives = 36/95 (37%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ ++ ++K K+ K + + K+E K+ + K+K E+ + K
Sbjct: 9 ELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDD 68
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +KK K K K KKK K +
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSS 103
Score = 44.6 bits (106), Expect = 3e-05
Identities = 14/78 (17%), Positives = 28/78 (35%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K+ ++ E +KK + + K +KK + + KK EKK + K
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKD 123
Query: 254 KEKKKKKKKKEKKKKKDE 271
+ + + D+
Sbjct: 124 IDVLNQADDDDDDDDDDD 141
Score = 42.7 bits (101), Expect = 1e-04
Identities = 14/76 (18%), Positives = 25/76 (32%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
E +KK + + K KKK + + + KK +KK K K + +
Sbjct: 71 ESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQA 130
Query: 257 KKKKKKKEKKKKKDEG 272
+ D+
Sbjct: 131 DDDDDDDDDDDLDDDD 146
Score = 40.4 bits (95), Expect = 7e-04
Identities = 14/83 (16%), Positives = 27/83 (32%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K E + ++K + K + +KK K++ KK +KK K K
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKD 123
Query: 249 KEEKKKEKKKKKKKKEKKKKKDE 271
+ + + D+
Sbjct: 124 IDVLNQADDDDDDDDDDDLDDDD 146
Score = 39.6 bits (93), Expect = 0.001
Identities = 13/87 (14%), Positives = 26/87 (29%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
K+K + K K KK+ K E KK ++K K + +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQ 129
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ + + +D+
Sbjct: 130 ADDDDDDDDDDDLDDDDIDDDDDDEDD 156
Score = 38.8 bits (91), Expect = 0.002
Identities = 15/79 (18%), Positives = 25/79 (31%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
E + +++ K K K K+K K E KK +KK +K K
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLN 128
Query: 253 KKEKKKKKKKKEKKKKKDE 271
+ + + D
Sbjct: 129 QADDDDDDDDDDDLDDDDI 147
Score = 38.1 bits (89), Expect = 0.004
Identities = 11/82 (13%), Positives = 26/82 (31%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ + +K+ + + K KKK K + + K+ +KK K+ +
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLN 128
Query: 251 EKKKEKKKKKKKKEKKKKKDEG 272
+ + D+
Sbjct: 129 QADDDDDDDDDDDLDDDDIDDD 150
Score = 37.7 bits (88), Expect = 0.005
Identities = 10/82 (12%), Positives = 25/82 (30%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++K + + + +KK + + KK +KK K + K+ +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQ 129
Query: 251 EKKKEKKKKKKKKEKKKKKDEG 272
+ + D+
Sbjct: 130 ADDDDDDDDDDDLDDDDIDDDD 151
Score = 37.3 bits (87), Expect = 0.006
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+ + ++E KKK KK K K K K++ K+ + KK+ ++ +
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMV 63
Query: 267 KKKDEGRRR 275
K D+
Sbjct: 64 KDTDDATES 72
Score = 37.3 bits (87), Expect = 0.007
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKK--KKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+ + +++ KKK KK K K K K++ K+ + KKK ++ +
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMV 63
Query: 260 KKKKEKKKKKDEGRRR 275
K + + ++
Sbjct: 64 KDTDDATESDIPKKKT 79
Score = 37.3 bits (87), Expect = 0.007
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K + ++E KK+ KK K K K KE+ K+ E KK+ ++ +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSG 61
Query: 270 DE 271
Sbjct: 62 MV 63
Score = 36.9 bits (86), Expect = 0.010
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K E E++ KKK KK K K + KEE K+ + KKK E+ +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIF 58
Score = 36.5 bits (85), Expect = 0.012
Identities = 13/83 (15%), Positives = 27/83 (32%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ +++ + K K K+K K++ KK EKK K + K
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLN 128
Query: 249 KEEKKKEKKKKKKKKEKKKKKDE 271
+ + + + D+
Sbjct: 129 QADDDDDDDDDDDLDDDDIDDDD 151
Score = 35.7 bits (83), Expect = 0.021
Identities = 11/85 (12%), Positives = 26/85 (30%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ K++ + + K KKK K + K+ +K+ K K
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLN 128
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDE 271
+ ++ + + D+
Sbjct: 129 QADDDDDDDDDDDLDDDDIDDDDDD 153
Score = 35.4 bits (82), Expect = 0.027
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ + +++ KKK KK K K + K+E K+ E KKK ++ +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSG 61
Query: 269 KDE 271
+
Sbjct: 62 MVK 64
Score = 34.2 bits (79), Expect = 0.059
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + +++ KKK KK K K K K++ K+ + KK+ ++ D+
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQ 54
Score = 33.4 bits (77), Expect = 0.12
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + +E+ KKK KK K K K K+E K+ + KKK ++ +
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIF 58
Score = 33.4 bits (77), Expect = 0.13
Identities = 11/100 (11%), Positives = 36/100 (36%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K K++ + KK E++ +K ++ K + + + +
Sbjct: 85 AAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDD 144
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ ++ + ++ + + ++KK+ K+ +K
Sbjct: 145 DDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Score = 33.0 bits (76), Expect = 0.15
Identities = 13/120 (10%), Positives = 36/120 (30%), Gaps = 24/120 (20%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K+ + K K +K+ + + + K+ +K+ +K + +
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQAD 131
Query: 237 EKKKK------------------------KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+ + ++E+KKE K+ +K + +
Sbjct: 132 DDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDE 191
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 50.7 bits (122), Expect = 3e-07
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
E EE+E E E+KK +KK ++K +KK +K++ +K KKK + KK K
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKK--QRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450
Query: 253 KKEKKK 258
+ KK
Sbjct: 451 GETKKV 456
Score = 50.7 bits (122), Expect = 3e-07
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 206 EKKKEKKKEKKKEK-KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ +++E + E+KK +KK++K +K+ +K++ EK K++ + KK K
Sbjct: 392 LLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDG 451
Query: 265 KKKKKDE 271
+ KK D
Sbjct: 452 ETKKVDP 458
Score = 50.3 bits (121), Expect = 5e-07
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ ++EE E E+KK +KK++K EKK +KE+ +K KK+ + K+ K
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKK---AEKEEAEKAAAKKKAEAAAKKAKGP 449
Query: 249 KEEKKKE 255
E KK
Sbjct: 450 DGETKKV 456
Score = 48.8 bits (117), Expect = 1e-06
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E+K+ +KK++K EKK EK++ EK KKK + K+ K E KK + E
Sbjct: 404 GNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPDPLGE 463
Query: 256 K 256
K
Sbjct: 464 K 464
Score = 48.8 bits (117), Expect = 1e-06
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + ++++ + ++KK KK++K EKK +KEE +K KKK + KK K
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Query: 272 G 272
Sbjct: 450 D 450
Score = 47.2 bits (113), Expect = 5e-06
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K + E+++ E ++KK ++K++K ++K +K+E +K KKK + KK K
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Query: 271 EG 272
+G
Sbjct: 450 DG 451
Score = 45.7 bits (109), Expect = 1e-05
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E ++E+ + ++KK +KK++K +KK +K++ E+ +KK + K+ K E
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Query: 272 GR 273
+
Sbjct: 453 TK 454
Score = 43.0 bits (102), Expect = 1e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+RK+ RKK+ + +++ +KEE +K K+K + KK K + + KK
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 42.6 bits (101), Expect = 1e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
RK+ RK++++ E+K E+++ EK KKK + KK K E KK
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 42.6 bits (101), Expect = 2e-04
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
ER+K R+++RK ++K E+EE E+ ++K + K+ K + +K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 40.7 bits (96), Expect = 6e-04
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
RK+ R+K+++ KK E+E E EK KKK + KK + E KK
Sbjct: 408 PAERKKLRKKQRKAEKKAEKE-EAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 29.9 bits (68), Expect = 1.4
Identities = 10/51 (19%), Positives = 27/51 (52%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K + ++++ E ++KK +K+++ +KK +K+E +K + +
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAE 440
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 49.8 bits (119), Expect = 3e-07
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ E E EE+ + + + + K KEK K +KK KK K + K K K K K K +
Sbjct: 56 PQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Query: 253 KKEKKKKKKKKEKK 266
K +K K +
Sbjct: 116 KPKKPPSKTAAKAP 129
Score = 49.4 bits (118), Expect = 4e-07
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
EE + E E EE+ K + + + K KEK K +KK K+ K K K K K K +
Sbjct: 52 PTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKV 111
Query: 253 KKEKKKKKKKKEKKKKK 269
K + K KK + K
Sbjct: 112 KPQPKPKKPPSKTAAKA 128
Score = 47.1 bits (112), Expect = 3e-06
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E +E + + E +E+ K + + E K K+K K ++K KK K K K K + K
Sbjct: 50 EAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109
Query: 255 EKKKKKKKKEKKKKKD 270
+ K + K K+ K
Sbjct: 110 KVKPQPKPKKPPSKTA 125
Score = 41.3 bits (97), Expect = 2e-04
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K + ++ + + E +++ K + + + K K++ K +K+ KK +
Sbjct: 39 LAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPK 98
Query: 256 KKKKKKKKEKKKKKD 270
K K K K K K K
Sbjct: 99 PKPKPKPKPKPKVKP 113
Score = 39.4 bits (92), Expect = 0.001
Identities = 19/79 (24%), Positives = 29/79 (36%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E E E + K++ K EKK +K K + K + K K K K + K KK K +
Sbjct: 71 TEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPA 130
Query: 254 KEKKKKKKKKEKKKKKDEG 272
+ +
Sbjct: 131 APNQPARPPSAASASGAAT 149
Score = 38.6 bits (90), Expect = 0.002
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ + + +E+ K EKK +K K K K K K + K + + K KK K K
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 36.3 bits (84), Expect = 0.011
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E E+ + E + +++ K + + + K KE+ K EKK KK K + K K
Sbjct: 50 EAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKP 107
Score = 34.8 bits (80), Expect = 0.032
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ K +E+ + EKK +K K K K K K K K + + + KK K K
Sbjct: 75 TPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 31.7 bits (72), Expect = 0.33
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ E + ++K + +K+ KK K K K K + K + K + K KK K +
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 31.7 bits (72), Expect = 0.35
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K + K K +K + EK+ +K + K K K K K K K + + KK K
Sbjct: 68 KPPTEPETPPEPTPPKPK-EKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAA 126
Query: 234 KKK 236
K
Sbjct: 127 KAP 129
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 50.0 bits (120), Expect = 3e-07
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+E K E K +K ++ K+KK++ ++ + + + +K++K K++ KKKK +E K
Sbjct: 209 KELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKG 268
Query: 255 EKKKKKKKKEKKKK 268
K KK + KK
Sbjct: 269 VKALKKVVAKGMKK 282
Score = 49.6 bits (119), Expect = 4e-07
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE--KKKEKKKKKKKKKEKKKKKKEKKK 247
++ K E + ++ KE KK+K++ ++ E + + +KK+K K++ KKKK KE K
Sbjct: 209 KELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKG 268
Query: 248 KKEEKKKEKKKKKK 261
K KK K KK
Sbjct: 269 VKALKKVVAKGMKK 282
Score = 48.1 bits (115), Expect = 1e-06
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+ K+ K + K +K KE KK+K++ ++ + + + ++K+K KEE KK+K K
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 259 KKKKKEKKKKKDE 271
+ K + KK
Sbjct: 265 ESKGVKALKKVVA 277
Score = 45.4 bits (108), Expect = 1e-05
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK---KKKKKEKKKKKKEKKKKKEEK 252
+ +E K E K K K+ K+KK+E ++ + + EKK+K KE+ KKK+ K
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 253 KKEKKKKKKKKEKKKKK 269
+ + K KK K K
Sbjct: 265 ESKGVKALKKVVAKGMK 281
Score = 45.0 bits (107), Expect = 2e-05
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K + + K+ +++K E +++ + E + EKK++ K++ KKK+ K+ K K
Sbjct: 212 LKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKA 271
Query: 237 EKKKKKKEKKK 247
KK K KK
Sbjct: 272 LKKVVAKGMKK 282
Score = 43.1 bits (102), Expect = 7e-05
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ + +E +K++ + EE + + +K++K KE+ K+KK K+ K + KK K
Sbjct: 221 KPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGM 280
Query: 248 KK 249
KK
Sbjct: 281 KK 282
Score = 42.7 bits (101), Expect = 8e-05
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
E + + ++ K+KK E E++ E E + ++K+K K++ KKKK K+ + K KK
Sbjct: 216 LIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKV 275
Query: 236 KEKKKKK 242
K KK
Sbjct: 276 VAKGMKK 282
Score = 37.7 bits (88), Expect = 0.003
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+ KE K E K K KE KKKK+E ++ E + +KK+K KE+ KKK
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 273 RRR 275
+
Sbjct: 265 ESK 267
Score = 33.8 bits (78), Expect = 0.075
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ KE K E K K K+ KK+K++ +++ + + +K++K K++ K+KK K
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 269 KDEGRR 274
+ +G +
Sbjct: 265 ESKGVK 270
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 50.4 bits (120), Expect = 4e-07
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE-KKKEKKKKKKKKK 236
KER Q KR ++ K+E ++K+ + + ++K + +K++ E ++K+++ K K
Sbjct: 204 KERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP 263
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
KE K+ E +K+E +K + + +K
Sbjct: 264 ADTSSPKEDKQVAENQKREIEKAQIEIKKN 293
Score = 45.0 bits (106), Expect = 2e-05
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
++R R+K++E K K + K+ ++ E +K+E +K + + KK +E K K K
Sbjct: 245 KQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHK 304
Query: 246 KK--KKEEKKKEKKKKKKKKEKKKKKDE 271
K+E K EK+ + K+ E +KK++
Sbjct: 305 AFDLKQESKASEKEAEDKELEAQKKREP 332
Score = 40.4 bits (94), Expect = 7e-04
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ R+KQ+ K K KE+++ E +K+E +K + + +K E+ K K K
Sbjct: 248 DEVRQKQQEAKNLPKPADTSSPKEDKQVAE---NQKREIEKAQIEIKKNDEEALKAKDHK 304
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K++ K +KE + KE + +KK++
Sbjct: 305 AFDLKQESKASEKEAEDKELEAQKKREP 332
Score = 40.0 bits (93), Expect = 0.001
Identities = 23/105 (21%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKK--KEKKKEKKKEKKKKEKKKEKKKKKKK---- 234
R + R+K++ + + KE+K+ + +K+E +K + + +K E+ K K
Sbjct: 247 RDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAF 306
Query: 235 --KKEKKKKKKEKKKKKEEKKKEKKK-----KKKKKEKKKKKDEG 272
K+E K +KE + K+ E +K+++ +K K + + +
Sbjct: 307 DLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSL 351
Score = 39.6 bits (92), Expect = 0.001
Identities = 22/102 (21%), Positives = 47/102 (46%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
D + + K + K ++ E +K E +K + + +K E+ + K +
Sbjct: 248 DEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFD 307
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K++ K +KE + K+ E +KK+E ++ +K K + E +
Sbjct: 308 LKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPT 349
Score = 39.6 bits (92), Expect = 0.001
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKE-KKKEKKKK--EKKKEKKKKKK 233
K+E K++ K ++K + + +K+ ++ ++K++E K K K++K+ +
Sbjct: 219 KEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAEN 278
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+K+E +K + E KK EE K K K +++ K E
Sbjct: 279 QKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKE 318
Score = 38.4 bits (89), Expect = 0.003
Identities = 21/98 (21%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E ++ K R+ + KE E +E+ K+ ++ +++ +KK+ + K ++K +
Sbjct: 184 EALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNA 243
Query: 239 KKKKKE-KKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K++ E ++K++E K K ++ K+ E ++R
Sbjct: 244 DKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKR 281
Score = 37.3 bits (86), Expect = 0.007
Identities = 16/81 (19%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 193 KKEEEEKEEEKKEEKKKE--KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K+ E +++ ++ ++ K+E KK+ + ++K + K++ + ++K+++ K K
Sbjct: 204 KERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP 263
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
K+ K+ E +K++ E
Sbjct: 264 ADTSSPKEDKQVAENQKREIE 284
Score = 37.3 bits (86), Expect = 0.007
Identities = 17/83 (20%), Positives = 48/83 (57%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+ + +E+ EK + + K++E +++ K+ ++ KE+ KK+ +K ++K +
Sbjct: 180 KKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFA 239
Query: 247 KKKEEKKKEKKKKKKKKEKKKKK 269
+ +K++++ ++K+++ K K
Sbjct: 240 QDNADKQRDEVRQKQQEAKNLPK 262
Score = 28.4 bits (63), Expect = 4.1
Identities = 15/79 (18%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKE-KKKEKKKEKKKKEKKKEKKKKKKKKK 236
++R ++ + +K +E + ++ K + K+E K EK+ E K+ E +K+++ + +
Sbjct: 279 QKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQ 338
Query: 237 EKKKKKKEKKKKKEEKKKE 255
+ K + + + E +
Sbjct: 339 KTKPQVEAQPTSLNEDAID 357
Score = 27.7 bits (61), Expect = 8.0
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ E +K K K K + K+E K EK+ + KE + +KK++ ++ +K K + +
Sbjct: 287 QIEIKKNDEEALKAKDHKAFDLKQESKASEKE-AEDKELEAQKKREPVAEDLQKTKPQVE 345
Query: 237 EKKKKKKE 244
+ E
Sbjct: 346 AQPTSLNE 353
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 49.8 bits (120), Expect = 7e-07
Identities = 25/96 (26%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKK----EEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
++ + K + + KKE+ ++EE+K E++ ++ KE KKE + K+ + +K
Sbjct: 541 ALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGG 600
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K + E +K+ + ++K+KKKKK+++K+++
Sbjct: 601 YASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
Score = 49.4 bits (119), Expect = 9e-07
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 16/103 (15%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK----KKE- 237
+ R+ ++K ++ E +E +K +++ E+KKEK +E++ K ++ +K+ ++ KKE
Sbjct: 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEA 586
Query: 238 -----------KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K K + E +K K +KKEKKKKK
Sbjct: 587 DEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKK 629
Score = 47.9 bits (115), Expect = 3e-06
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 177 KKERRKQRRRKRKRKRKKEE-EEKEEEKKEEKKKEKKKEKKKEKKK-KEKKKE------- 227
+++ + ++ ++ KEE EEK+E+ +EE+ K ++ +K+ ++ KE KKE
Sbjct: 533 EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKE 592
Query: 228 ------KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K E + +K K E+K+K+KKK+K+K+E+ K DE
Sbjct: 593 LRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDE 642
Score = 45.2 bits (108), Expect = 2e-05
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 26/119 (21%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK------ 230
KKE + + R+ ++ K E E +K+ K +KKEKKKK++K+++++
Sbjct: 583 KKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDE 642
Query: 231 -------------KKKKKKE-------KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KE K K +K +K K+KKKKK K K K +
Sbjct: 643 VKYLSLGQKGEVLSIPDDKEAIVQAGIMKMKVPLSDLEKIQKPKKKKKKKPKTVKPKPR 701
Score = 39.0 bits (92), Expect = 0.002
Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 7/74 (9%)
Query: 197 EEKEE-----EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK-KKKKEKKKKKKEKKKKKE 250
E+KE+ EE ++E + +K +E + K+ EK K++ ++KKEK +++++K ++
Sbjct: 513 EDKEKLNELIASLEELERELE-QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571
Query: 251 EKKKEKKKKKKKKE 264
EK+ ++ K+ KKE
Sbjct: 572 EKEAQQAIKEAKKE 585
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 49.3 bits (117), Expect = 9e-07
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK---------------- 228
RK+ +EE +E KKK + K+ KK + E
Sbjct: 48 SRKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALD 107
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ KK + ++K EE+K EKK +K++K KK +D
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDV 150
Score = 41.6 bits (97), Expect = 3e-04
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 166 GDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEE-------EKKEEKKKEKKKEKKKE 218
+ E G KK R +R K+ + E EE E K+ KK ++
Sbjct: 60 EEPDENGAVSKKKPTRS-VKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTR 118
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+K + +++K +KK +K++K +K + E + +
Sbjct: 119 RKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSES 157
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 49.5 bits (119), Expect = 1e-06
Identities = 12/81 (14%), Positives = 36/81 (44%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EEEE +E+ + + +E+ K + +E E ++E K + ++ + + +
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARP 98
Query: 255 EKKKKKKKKEKKKKKDEGRRR 275
+ + + E ++ + ++
Sbjct: 99 AEDEAARPAEAAARRPKAKKA 119
Score = 39.4 bits (93), Expect = 0.001
Identities = 15/78 (19%), Positives = 35/78 (44%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
EK +E E K +++E +K+E K+E +++ K + E+ + +++ K E
Sbjct: 22 EKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAP 81
Query: 258 KKKKKKEKKKKKDEGRRR 275
++ + + R
Sbjct: 82 AEEAAEAAAAAEAAARPA 99
Score = 38.3 bits (90), Expect = 0.003
Identities = 12/73 (16%), Positives = 33/73 (45%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+E E K +++E +KE+ K+E ++E K + ++ + +++ K + E+
Sbjct: 25 KELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEE 84
Query: 257 KKKKKKKEKKKKK 269
+ + +
Sbjct: 85 AAEAAAAAEAAAR 97
Score = 37.1 bits (87), Expect = 0.007
Identities = 11/70 (15%), Positives = 34/70 (48%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
E KE K+ +K ++ + K E+++ +KE+ K++ E++ + + ++ +
Sbjct: 8 ELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAE 67
Query: 266 KKKKDEGRRR 275
+++ +
Sbjct: 68 AEEEAKAEAA 77
Score = 36.0 bits (84), Expect = 0.019
Identities = 15/77 (19%), Positives = 35/77 (45%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
KE ++ EK KE E K E+++ +K++ +++ +++ K + +E E ++
Sbjct: 11 KELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEE 70
Query: 259 KKKKKEKKKKKDEGRRR 275
+ K + E
Sbjct: 71 EAKAEAAAAAPAEEAAE 87
Score = 32.9 bits (76), Expect = 0.19
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK------KEEKKKEKKKKKKKKEKKKKKD 270
+ + E KE K+ EK K+ + K +EE +KE+ K++ ++E K + +
Sbjct: 2 SKVRVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAE 61
Query: 271 EGRRR 275
E
Sbjct: 62 EAAAA 66
Score = 31.4 bits (72), Expect = 0.54
Identities = 12/69 (17%), Positives = 33/69 (47%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+ E KE K+ +K ++ + K +++E +K++ +++ E++ K + +E
Sbjct: 5 RVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAA 64
Query: 267 KKKDEGRRR 275
+ E +
Sbjct: 65 AAEAEEEAK 73
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 48.9 bits (117), Expect = 1e-06
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K + +++ + + + K +K + K+K K K E+ EK + K+K+K+KK
Sbjct: 277 KSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKK 336
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKK 267
K+EKKKK+ E+ +E+ +K + + K
Sbjct: 337 KEEKKKKQIERLEERIEKLEVQATDK 362
Score = 48.9 bits (117), Expect = 1e-06
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK-KKKKKKEKKKKKKEKKKKKEEKKKEK 256
EK +EK + K + K+ KK + K+K K K +++ +K E K+KK+EKKKE+
Sbjct: 280 EKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEE 339
Query: 257 KKKKKKKEKKKK 268
KKKK+ + +++
Sbjct: 340 KKKKQIERLEER 351
Score = 47.7 bits (114), Expect = 2e-06
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K EK EK +EK K K + K+ +K + K K K K E+ +K + + ++KK
Sbjct: 273 KTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKK 332
Query: 259 KKKKKEKKKKK 269
K+KKKE+KKKK
Sbjct: 333 KEKKKEEKKKK 343
Score = 47.7 bits (114), Expect = 3e-06
Identities = 24/84 (28%), Positives = 49/84 (58%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K + K K + + + KK E + K++ K K ++ +K + K++KK+KKKE+K
Sbjct: 281 KLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEK 340
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKD 270
KKK+ ++ E++ +K + + K++
Sbjct: 341 KKKQIERLEERIEKLEVQATDKEE 364
Score = 45.0 bits (107), Expect = 2e-05
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K + K+ ++ + +++ + K E+ EK + KEKKK++KK+EKKKK+ ++
Sbjct: 289 LKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERL 348
Query: 237 EKKKKKKEKKKKKEEKKKE 255
E++ +K E + +E+ K
Sbjct: 349 EERIEKLEVQATDKEENKT 367
Score = 44.3 bits (105), Expect = 4e-05
Identities = 22/86 (25%), Positives = 48/86 (55%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ Q + K + + K ++ + ++K + K E+ ++ E K+KKK+KK+++K
Sbjct: 281 KLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEK 340
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKK 266
KKK+ ++ +E +K + + K+E K
Sbjct: 341 KKKQIERLEERIEKLEVQATDKEENK 366
Score = 42.0 bits (99), Expect = 2e-04
Identities = 26/83 (31%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K + + + KR +K E + K++ K K ++ +K + + KEKKKEKKK++KKKK
Sbjct: 284 EKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKK 343
Query: 237 E-KKKKKKEKKKKKEEKKKEKKK 258
+ ++ +++ +K + + KE+ K
Sbjct: 344 QIERLEERIEKLEVQATDKEENK 366
Score = 40.0 bits (94), Expect = 9e-04
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
K K +K K + + + E+ EK + KEKKKEKKK+EK KKK+
Sbjct: 289 LKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEK---KKKQI 345
Query: 233 KKKKEKKKKKKEKKKKKEEKK 253
++ +E+ +K + + KEE K
Sbjct: 346 ERLEERIEKLEVQATDKEENK 366
Score = 36.9 bits (86), Expect = 0.009
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
L+Y K KK +++ K + E++ EK + + KEKKKEKKKE+KKK K+
Sbjct: 287 KALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKK-KQI 345
Query: 227 EKKKKKKKKKEKKKKKKEKKK 247
E+ +++ +K E + KE+ K
Sbjct: 346 ERLEERIEKLEVQATDKEENK 366
Score = 27.7 bits (62), Expect = 7.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K ++K K K + K+ KK + K K K K +++ +K E +
Sbjct: 281 KLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKE 330
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 48.9 bits (117), Expect = 1e-06
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ E E + EE K+E KK ++K ++ E + ++K++E +K K K +K KK KK
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
+ K KK K+K E
Sbjct: 148 LSEALKGLNYKKNFKEKLLKE 168
Score = 44.2 bits (105), Expect = 4e-05
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK-KKKKEKKKKKKEKKKKKEEKK 253
EE +KE +K EEK ++ + E +K++++ EK K K K KK KK + K
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNY 157
Query: 254 KEKKKKKKKKEKKKKKDE 271
K+ K+K KE K
Sbjct: 158 KKNFKEKLLKELKSVILN 175
Score = 44.2 bits (105), Expect = 5e-05
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
E+ E + + ++ KK+ +K +EK ++ + + EKK+++ EK K K K KK KK
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Query: 266 KKKKDEGRRR 275
+ +G
Sbjct: 148 LSEALKGLNY 157
Score = 43.8 bits (104), Expect = 5e-05
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
EE E + + +E KKE KK E+K E+ + + +KKE++ +K + K + KK KK
Sbjct: 88 EENIE--IEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYD 145
Query: 261 KKKEKKKKKDEGRRR 275
+ K ++
Sbjct: 146 SNLSEALKGLNYKKN 160
Score = 41.9 bits (99), Expect = 2e-04
Identities = 21/90 (23%), Positives = 43/90 (47%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G++ + + + +K K+ EEK E+ + E +K++++ +K + K +K +K KK
Sbjct: 87 GEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDS 146
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+ K KK ++K K+ K
Sbjct: 147 NLSEALKGLNYKKNFKEKLLKELKSVILNA 176
Score = 38.8 bits (91), Expect = 0.003
Identities = 23/95 (24%), Positives = 40/95 (42%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KKE +K + + + + E++E+E EK + K +K +K +K + K KK
Sbjct: 101 KKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKN 160
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+K KE K ++ K + K
Sbjct: 161 FKEKLLKELKSVILNASSLLSLEELKAKIKTLFSS 195
Score = 38.8 bits (91), Expect = 0.003
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 178 KERRKQRRRKRKRKRKKEE-----EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
E Q +K +K EE E + E+K+EE +K K K K KK KK + +
Sbjct: 91 IEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSE 150
Query: 233 KKKKEKKKKK-KEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K KK KEK K+ + E+ K K
Sbjct: 151 ALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAK 188
Score = 38.5 bits (90), Expect = 0.003
Identities = 16/74 (21%), Positives = 37/74 (50%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
R+ K ++EK + KK+ + K+ +++KK +K +++ K+ + +
Sbjct: 378 REHNEKIDNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAE 437
Query: 246 KKKKEEKKKEKKKK 259
K E++ KE +K+
Sbjct: 438 IKALEKEIKELEKQ 451
Score = 37.3 bits (87), Expect = 0.007
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ K+ K ++ + E+++EE +K + K K KK KK E K KK
Sbjct: 100 LKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKK 159
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+K ++ K ++ K K K
Sbjct: 160 NFKEKLLKELKSVILNASSLLSLEELKAKIKTLFS 194
Score = 37.3 bits (87), Expect = 0.008
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K+EK K KKK + ++ + +K+KK EK EK+ K+ E + + +K+ K+
Sbjct: 388 KKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKE 447
Query: 264 EKKKKKDEGR 273
+K+ +
Sbjct: 448 LEKQLTNIEP 457
Score = 36.5 bits (85), Expect = 0.014
Identities = 12/66 (18%), Positives = 35/66 (53%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
++EK + KKK + K+ + +++KK +K +K+ ++ + + + +++ K+
Sbjct: 388 KKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKE 447
Query: 260 KKKKEK 265
+K+
Sbjct: 448 LEKQLT 453
Score = 35.8 bits (83), Expect = 0.025
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKE-EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
++ K + +K+ E +++ + ++EKK +K EK+ K+ + E K +K+
Sbjct: 386 NLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEI 445
Query: 236 KEKKKK 241
KE +K+
Sbjct: 446 KELEKQ 451
Score = 34.2 bits (79), Expect = 0.081
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 185 RRKRKRKRKKEEEEKEEEKKE-EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+ K K K+K E K++ + +++KK +K EK+ ++ + + K EK+ K+
Sbjct: 389 KEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKEL 448
Query: 244 EKKKKKEEK 252
EK+ E
Sbjct: 449 EKQLTNIEP 457
Score = 33.4 bits (77), Expect = 0.12
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E +E +K + K++K + KK+ + K+ +KEKK +K ++E K+
Sbjct: 374 NELIREHNEKIDNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQ 433
Query: 255 EKKKKKKKKEKKKKK 269
+ + K +++ K+
Sbjct: 434 LEAEIKALEKEIKEL 448
Score = 31.5 bits (72), Expect = 0.50
Identities = 13/72 (18%), Positives = 36/72 (50%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
K K+++ + K++ + ++ + +++KK +K EK+ K+ + + K
Sbjct: 382 EKIDNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKAL 441
Query: 241 KKKEKKKKKEEK 252
+K+ K+ +K+
Sbjct: 442 EKEIKELEKQLT 453
Score = 30.7 bits (70), Expect = 0.99
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 176 GKKERRKQRRRKRKRK-RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K+E ++ + K K KK ++ + E K K+ KEK KE K
Sbjct: 120 KKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELKSVILNASSL 179
Query: 235 KKEKKKKKKEKKKKKEEKKKEKK 257
++ K K K K +
Sbjct: 180 LSLEELKAKIKTLFSSNKPELAL 202
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 48.6 bits (116), Expect = 2e-06
Identities = 17/96 (17%), Positives = 46/96 (47%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ R + +E EE+ EE KE+ + K++ +++E +E ++ + ++ K+E +
Sbjct: 305 SLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE 364
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K ++ EE + +++ + E + +
Sbjct: 365 EKLSALLEELEELFEALREELAELEAELAEIRNELE 400
Score = 42.8 bits (101), Expect = 2e-04
Identities = 18/93 (19%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK-EKKKKKKKKKEK 238
K+ + + + E EE + E ++ E++ E+ KEK + K++ E+++ ++ E+
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ E+ K++ E+K ++ ++ + ++E
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREE 384
Score = 42.4 bits (100), Expect = 2e-04
Identities = 19/98 (19%), Positives = 51/98 (52%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++E + + + K + EE E E E+ +E + E ++ +++ E+ KEK + K++
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
E+++ E+ ++ + +E K++ ++K ++
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377
Score = 42.4 bits (100), Expect = 2e-04
Identities = 18/108 (16%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
LE K + ++ + + + + EEE EE ++E ++ EK+ E+ K + ++ +++ +
Sbjct: 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284
Query: 229 KKKKK--KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ +++ + KE+ ++ + + E+ +E + + ++ E++ ++ + +
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKI 332
Score = 42.4 bits (100), Expect = 2e-04
Identities = 15/103 (14%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ + + + ++ +E E EE ++ + ++ +++ E+K +E ++ + +
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382
Query: 237 EK----KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E+ + + E + + EE K+E + +++ E+ ++ E +
Sbjct: 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKE 425
Score = 42.0 bits (99), Expect = 3e-04
Identities = 21/89 (23%), Positives = 57/89 (64%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
R ++ + + +E EEK +E +EE ++ +K+ ++ +++ +E + EK++ + + KE ++
Sbjct: 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K+E +++ E + E + K++ EK +++
Sbjct: 885 EKEELEEELRELESELAELKEEIEKLRER 913
Score = 41.6 bits (98), Expect = 3e-04
Identities = 18/95 (18%), Positives = 56/95 (58%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
K + +++ + +EE + EE+ EE ++E ++ +K+ ++ K + +E +++ ++ +E+
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELL 291
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ KE+ ++ E + +++ ++ E + ++ E R
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLE 326
Score = 40.9 bits (96), Expect = 6e-04
Identities = 23/91 (25%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK---- 239
+ RK + +RK E E+ E+ E+ +E +K+ +K +++ EK + ++ K + +E +
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230
Query: 240 -KKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K KE +K+ EE ++E + +++ E+ +++
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEE 261
Score = 40.1 bits (94), Expect = 0.001
Identities = 24/89 (26%), Positives = 60/89 (67%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
++RR+R + +E EE+ EE +E+ + +++ ++ EK+ +E K+E ++ + +K+E + +
Sbjct: 820 EQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDEL 879
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KE +++KEE ++E ++ + + + K++ E
Sbjct: 880 KELEEEKEELEEELRELESELAELKEEIE 908
Score = 38.9 bits (91), Expect = 0.002
Identities = 15/97 (15%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK---KKEKKKEKKKKKKK 234
+E +++ K ++ EE E ++E + E + + + + K+E + +++ ++
Sbjct: 357 EEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERL 416
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ + K+E K+ + E ++ + + ++ E+ ++ +E
Sbjct: 417 SERLEDLKEELKELEAELEELQTELEELNEELEELEE 453
Score = 38.9 bits (91), Expect = 0.003
Identities = 20/97 (20%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 178 KERRKQRRRKRKRKRKKEE--EEKEEEKKEEKKK-EKKKEKKKEKKKKEKKKEKKKKKKK 234
KER+++ RK +R + E E+ EE +++ +K E++ EK + ++ + + + +
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K+ +KE ++ +EE + +++ ++ +E+ ++ ++
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEK 267
Score = 38.2 bits (89), Expect = 0.004
Identities = 20/90 (22%), Positives = 54/90 (60%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K + + + ++E E+ +E+ EE + EK++ + + K+ +E+K+E +++ ++ + + +
Sbjct: 843 KLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KE+ +K E+ +E + K ++ E + + E
Sbjct: 903 LKEEIEKLRERLEELEAKLERLEVELPELE 932
Score = 37.8 bits (88), Expect = 0.005
Identities = 14/93 (15%), Positives = 47/93 (50%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
++ + K+E EEK EE ++ + +++ + + + E + + ++ K + +
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES 408
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+E+ ++ E+ ++ K++ K+ E + ++ +
Sbjct: 409 LEERLERLSERLEDLKEELKELEAELEELQTEL 441
Score = 37.8 bits (88), Expect = 0.005
Identities = 19/101 (18%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK--KKEKKKKKKK 234
+E KQ + ++ K E ++ + + E + K KE +K+ + ++E + +++
Sbjct: 195 LEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEE 254
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+E +++ +E +K+ EE K E ++ +++ E+ +++ +
Sbjct: 255 LEELQEELEEAEKEIEELKSELEELREELEELQEELLELKE 295
Score = 37.4 bits (87), Expect = 0.007
Identities = 19/95 (20%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEK-EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ RR+ +R+ + K E EEE ++ + + ++ E++ E+ ++E ++ +++ ++ ++
Sbjct: 706 ELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEE 765
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E + ++ K KEE ++ ++K++ +E+ ++ +E
Sbjct: 766 ELESLEEALAKLKEEIEELEEKRQALQEELEELEE 800
Score = 37.4 bits (87), Expect = 0.007
Identities = 18/91 (19%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 181 RKQRRRKRKRKRKKEE-EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+Q + + + K E E E K KE +KE ++ +++ + +E+ ++ +++ E+
Sbjct: 206 ERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEA 265
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+K+ E+ K + E+ +E+ ++ +++ + K++
Sbjct: 266 EKEIEELKSELEELREELEELQEELLELKEE 296
Score = 37.4 bits (87), Expect = 0.008
Identities = 18/101 (17%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK- 235
+++ + R+ + KR+ E+E E+ + + +E ++E ++ +++ E+ +E+ ++ +++
Sbjct: 708 RRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEEL 767
Query: 236 -KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ K K++ +E ++K + +++ +E +++ +E RR
Sbjct: 768 ESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERR 808
Score = 36.6 bits (85), Expect = 0.012
Identities = 13/95 (13%), Positives = 47/95 (49%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ + + + K EE EE + +++ + E + + + E ++ K++ + ++
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ + + KEE K+ + + ++ + + ++ +E
Sbjct: 412 RLERLSERLEDLKEELKELEAELEELQTELEELNE 446
Score = 36.2 bits (84), Expect = 0.016
Identities = 22/100 (22%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+ ++ +R+ + E+E +E E++ E+ +EK E ++E ++ EK+ E+ K++
Sbjct: 805 AERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEE 864
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKK-KKKEKKKKKDE 271
++ E +K++ E + K+ E++KE+ +++ ++ E + + +
Sbjct: 865 LEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904
Score = 36.2 bits (84), Expect = 0.016
Identities = 16/93 (17%), Positives = 58/93 (62%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ + ++ + R +E EE+ EE +EE ++ +++ ++ E++ + ++ K K++ +
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E ++K++ +++ EE ++E ++ +++ + +++
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLDALERE 815
Score = 36.2 bits (84), Expect = 0.018
Identities = 13/94 (13%), Positives = 48/94 (51%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + + R+ + ++ + EE KEE +++ ++ ++ E +E+ + + +
Sbjct: 333 EALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAEL 392
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ + + E+ K++ E +E+ ++ ++ + K++
Sbjct: 393 AEIRNELEELKREIESLEERLERLSERLEDLKEE 426
Score = 35.8 bits (83), Expect = 0.025
Identities = 13/98 (13%), Positives = 48/98 (48%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
++ + EE E E + + + + +E K+E + E++ E+ ++ + +
Sbjct: 365 EKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLK 424
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ K+ E + ++ + + E+ ++ ++ +++ ++ R
Sbjct: 425 EELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462
Score = 35.5 bits (82), Expect = 0.029
Identities = 21/100 (21%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+E ++ +R E E + E++ E+ +++ +E E++ +E +++ + +++ +
Sbjct: 795 LEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL--EEEIEELEEKLDELEEELE 852
Query: 237 EKKKKKKEKKKKKEEKKKEKKK-KKKKKEKKKKKDEGRRR 275
E +K+ +E K++ EE + EK++ + + KE +++K+E
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEE 892
Score = 34.7 bits (80), Expect = 0.047
Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE--KKKEKKKKKKKKK 236
E + K + K+E EE E EK+E + + K+ E++KE+ ++E + + + + K++
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907
Query: 237 EKKKKKKEKKKKKEEKKKEKKKK 259
EK +++ E+ + K E+ + + +
Sbjct: 908 EKLRERLEELEAKLERLEVELPE 930
Score = 34.7 bits (80), Expect = 0.050
Identities = 17/98 (17%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ + K + + K +E E+ E +E+ E + E + + E+ K++ +
Sbjct: 350 EQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESL 409
Query: 237 EKKKKKKE---KKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E++ ++ + K+E K+ E + ++ + E ++ +E
Sbjct: 410 EERLERLSERLEDLKEELKELEAELEELQTELEELNEE 447
Score = 33.1 bits (76), Expect = 0.16
Identities = 17/86 (19%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
++RK + E + + E+ E+ ++ +E +K+ +K E++ EK ++ ++ K E ++
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKA------ELRE 224
Query: 248 KKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ K K+ +K+ ++ +++ R
Sbjct: 225 LELALLLAKLKELRKELEELEEELSR 250
Score = 33.1 bits (76), Expect = 0.17
Identities = 16/94 (17%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEK-KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E R + K+E E EE + ++ E KE+ KE + + ++ + + ++ ++
Sbjct: 389 EAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL 448
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ +++ ++ + K+ E++ + ++E ++ + E
Sbjct: 449 EELEEQLEELRDRLKELERELAELQEELQRLEKE 482
Score = 32.8 bits (75), Expect = 0.22
Identities = 20/100 (20%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKE-EKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
+ E + + + + + K+ EEEKEE ++E + + + E K+E +K ++ E+ + K +
Sbjct: 863 EELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ E + + E++ ++E + + + +++ E+ +++ E
Sbjct: 923 RLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962
Score = 32.0 bits (73), Expect = 0.34
Identities = 21/103 (20%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK- 235
K+E K R R + + K E E E + EE+ +E+ ++ + + ++E ++ +++ +
Sbjct: 904 KEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGP 963
Query: 236 ---------KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+E +++ +E K ++E+ ++ K+K + E+ K+
Sbjct: 964 VNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006
Score = 32.0 bits (73), Expect = 0.44
Identities = 16/96 (16%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK-KEKKKEKKKKEKKKEKKKKKKKK 235
++ ++ + + E EE +EE +E+ + E+ E ++E + + + + +
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E ++ K+E + +E ++ ++ + KE+ K+ +
Sbjct: 397 NELEELKREIESLEERLERLSERLEDLKEELKELEA 432
Score = 30.5 bits (69), Expect = 1.2
Identities = 16/100 (16%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEE-EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+E ++ ++R + EEE E EE + K+E ++ ++K + +E+ +E +++ ++
Sbjct: 746 LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEA 805
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + + + + E++++ +++ ++ E++ ++ E +
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845
Score = 28.9 bits (65), Expect = 4.1
Identities = 16/98 (16%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK------------ 224
+ E + + + + + + EEE EEE ++ + E ++E ++ +++ E
Sbjct: 913 RLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEY 972
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
++ +++ ++ K +++ ++ K+K E ++ K+K+++
Sbjct: 973 EEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 48.0 bits (115), Expect = 2e-06
Identities = 23/50 (46%), Positives = 38/50 (76%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K++ K+ ++ K+K K KKK++EKK +K +KKK++KKK KK++KK +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 48.0 bits (115), Expect = 2e-06
Identities = 23/50 (46%), Positives = 38/50 (76%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
K+E ++ EE KE+ K KK+++++K +K KKK+K+KKK KK++KK +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 47.7 bits (114), Expect = 3e-06
Identities = 22/50 (44%), Positives = 38/50 (76%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K++ K+ E+ K+K K KKK++++K +K+++KKK KKK KK+K+K +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 47.7 bits (114), Expect = 3e-06
Identities = 22/53 (41%), Positives = 41/53 (77%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
++ KE+ ++ +E K+K K KKK+++KK +K+KKKK++KKK +++KK+ +K
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 47.7 bits (114), Expect = 3e-06
Identities = 22/53 (41%), Positives = 41/53 (77%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
++ KE+ ++ ++ K+K K KKK++EKK +K++KKKK+++K K++KKK +K
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 47.3 bits (113), Expect = 4e-06
Identities = 24/49 (48%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 202 EKKEEKKKE-KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
E+ ++ +E K+K K KKK+E+KK +K+KKKKK++KK KK++KK +K
Sbjct: 366 EELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 47.3 bits (113), Expect = 4e-06
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
EE + +E K+K K KKK ++KK +K++KKKK+KKK +K+KKK K
Sbjct: 366 EELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 46.5 bits (111), Expect = 6e-06
Identities = 22/53 (41%), Positives = 41/53 (77%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+E ++E K+ E+ KEK + K+K++++K +++KKKKK+KK+ KK+KK+ +K
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 46.1 bits (110), Expect = 9e-06
Identities = 26/53 (49%), Positives = 40/53 (75%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+E KEE K ++ K+K K +KK+E+KK +K+KK+KK+KKK KK+KK+ +K
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 45.7 bits (109), Expect = 1e-05
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++ K+ +E K++ K KKK+E+KK +K KKKKK +KK +K+KKK +K
Sbjct: 366 EELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 45.7 bits (109), Expect = 1e-05
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K++ K+ E+ KEK K KKK ++KK +++KKKK+ KKK KK+KKK ++
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 45.7 bits (109), Expect = 1e-05
Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 228 KKKKKKKKKE-KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K++ K+ +E K+K K KKK+EEKK +K+KKKKK++KK KK + + R
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 45.3 bits (108), Expect = 2e-05
Identities = 21/50 (42%), Positives = 37/50 (74%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KE+ ++ ++ K+K K KKK ++KK +++KK+KK+KKK K++KKK +
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 45.0 bits (107), Expect = 2e-05
Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ K+E K ++ K+K + KKK+E+KK ++ KKK+K+KKK KK KKK +
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 43.8 bits (104), Expect = 4e-05
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+ EE KE+ K KKK ++K+ +K KKKK++KK+ KK+KKK ++
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 43.4 bits (103), Expect = 7e-05
Identities = 22/50 (44%), Positives = 38/50 (76%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K+E K+ ++ KEK K +KK+++++ +K KKKKK+KK+ KK+K +GR+
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 43.4 bits (103), Expect = 7e-05
Identities = 24/53 (45%), Positives = 40/53 (75%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+E K+E K+ ++ ++K K K+K++EKK +K+KKK+K+KKK +K+KKK K
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 40.3 bits (95), Expect = 6e-04
Identities = 21/46 (45%), Positives = 36/46 (78%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
KR +E +EK + ++K++EKK +K+K+KKK++KK +K+KKK +K
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 39.2 bits (92), Expect = 0.002
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
KE +R + K K K ++K EEKK +K+K+KKK KKK KK+K+K ++
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 29.9 bits (68), Expect = 1.5
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 7/36 (19%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK 212
K+E +K ++RK+K+KRKK + K+ KKK +K
Sbjct: 386 KREEKKPQKRKKKKKRKK-------KGKKRKKKGRK 414
Score = 29.6 bits (67), Expect = 2.0
Identities = 13/39 (33%), Positives = 28/39 (71%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK 215
K++ K ++KR+ K+ ++ ++K++ KK+ KK++KK K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 28.0 bits (63), Expect = 6.1
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 12/48 (25%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK 220
Y K++R++++ ++++K+KK +KK+ KK KKK +K
Sbjct: 379 YPKPPKKKREEKKPQKRKKKKK------------RKKKGKKRKKKGRK 414
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 47.7 bits (114), Expect = 2e-06
Identities = 18/97 (18%), Positives = 42/97 (43%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE R+ K RK E+EK E +EEK + +++ +K E + ++ + + +
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ ++EE++ + + + + + D
Sbjct: 62 PAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAE 98
Score = 45.0 bits (107), Expect = 2e-05
Identities = 15/86 (17%), Positives = 42/86 (48%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
++ ++ E +E ++ + EK E ++EK + + KE+ K + ++ ++ ++ + K
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61
Query: 250 EEKKKEKKKKKKKKEKKKKKDEGRRR 275
E ++++E+ K + R
Sbjct: 62 PAASGEGGGGEEEEEEAKAEAAEFRA 87
Score = 40.8 bits (96), Expect = 4e-04
Identities = 13/90 (14%), Positives = 39/90 (43%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
++ + + +E + ++EK E ++EK + KE+ + + + +E + + K
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E ++++++ K + + R
Sbjct: 62 PAASGEGGGGEEEEEEAKAEAAEFRAYLRG 91
Score = 34.3 bits (79), Expect = 0.064
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++ +E E KE +K + EK + +++K + KE+ K + + ++ + E
Sbjct: 1 LKELREALAELAKELRKL-TEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELE 59
Query: 265 KKKKKD 270
K
Sbjct: 60 AKPAAS 65
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 48.2 bits (115), Expect = 3e-06
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K G ++ +RR+ +K E + +K+ K K KK+ +K KK K ++ K
Sbjct: 743 KKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATK 802
Query: 234 KKKEKKKKKKE 244
K+ KKK E
Sbjct: 803 AKRAAKKKVAE 813
Score = 47.8 bits (114), Expect = 3e-06
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+R K +K +K KK K+ + K+ E + +K+ K K +K +K
Sbjct: 728 ERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKA 787
Query: 251 EKKKEKKKK-----KKKKEKKKKKDE 271
+K K +K K K+ KKK E
Sbjct: 788 KKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 46.7 bits (111), Expect = 7e-06
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 176 GKKERRKQRR---RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
GK R K ++ K+ KR++ ++ E + EKK + K KK K K+ K
Sbjct: 735 GKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKT 794
Query: 233 KKKKEKKKKKKEKKKKKEE 251
+K K K+ KKK E
Sbjct: 795 QKIAAATKAKRAAKKKVAE 813
Score = 44.7 bits (106), Expect = 3e-05
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
R + R++ +K + +K ++++ KK + + +K+ K + KK + K K
Sbjct: 732 RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDAR---KAK 788
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKE 264
K K +K K K+ KKK
Sbjct: 789 KPSAKTQKIAAATKAKRAAKKKVA 812
Score = 41.3 bits (97), Expect = 4e-04
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 179 ERRKQRRRKRKRKR-KKEEEEKEEEKKEEKKKEKKKE-----KKKEKKKKEKKKEKKKKK 232
ER + K R++ KK + K+ K+ + K+ E + ++K K + K+ +K
Sbjct: 728 ERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKA 787
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKK 257
KK K +K K K KK+
Sbjct: 788 KKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 35.5 bits (82), Expect = 0.030
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK---EKKKKKEEKKKEKKKKKKKKEKKK 267
+ K ++K KK + KK K+++ KK + + E+K K K KK ++ KK
Sbjct: 730 APRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKK 789
Query: 268 KKDEGRR 274
+ ++
Sbjct: 790 PSAKTQK 796
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 47.0 bits (112), Expect = 3e-06
Identities = 19/76 (25%), Positives = 48/76 (63%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+++ K+ +EE +++++++ K K K KK K K ++K+K K++K+++ ++ EE
Sbjct: 30 DDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTP 89
Query: 255 EKKKKKKKKEKKKKKD 270
E + +K + +K +++
Sbjct: 90 EDELAEKLRLRKLQEE 105
Score = 30.8 bits (70), Expect = 0.66
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E+ ++K+E+K K K K KK K K E+K+K +
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEE 78
Score = 30.0 bits (68), Expect = 1.3
Identities = 16/61 (26%), Positives = 36/61 (59%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+E + + K K K+ + + +E+EK + +K+EK + +E +++ EK + +K ++
Sbjct: 45 KEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQE 104
Query: 237 E 237
E
Sbjct: 105 E 105
Score = 28.5 bits (64), Expect = 3.3
Identities = 15/61 (24%), Positives = 36/61 (59%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+KE K + + + +K + + EE++K +++KE+K ++ E+ E + +K + +K +
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQ 103
Query: 237 E 237
E
Sbjct: 104 E 104
Score = 27.3 bits (61), Expect = 8.1
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EK K EK + KKKK K + K ++
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDDDDYDG 229
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 47.9 bits (114), Expect = 3e-06
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
G KE K K+ E++ E E+ KE++K KK+ +++ E+ KE+++ KK
Sbjct: 507 GEFKEEINVLIEKLSALEKELEQKNE--HLEKLLKEQEKLKKELEQEMEELKERERNKKL 564
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ EK+ ++ K KKE + ++ K+KK K K+
Sbjct: 565 ELEKEAQEALKALKKEVESIIRELKEKKIHKAKEI 599
Score = 44.4 bits (105), Expect = 4e-05
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKE---EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ ++ E+ KE+EK + E++ E+ KE+++ KK + +K+ ++ K KKE +
Sbjct: 523 LEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVE 582
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+E K+KK K KE K + + K+ K +
Sbjct: 583 SIIRELKEKKIHKAKEIKSIEDLVKLKETKQK 614
Score = 41.7 bits (98), Expect = 3e-04
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEE--------EKEEEKKEEKKKEKKKEKKKEKK 220
E K ++E + + R+R +K + E+E +KE E + KEKK K KE K
Sbjct: 541 QEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIK 600
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E + K+ K+K +K + K + + + +K K +
Sbjct: 601 SIEDLVKLKETKQKIPQKPTNFQADKIGDKVRIRYFGQKGKIVQILGGN 649
Score = 40.6 bits (95), Expect = 8e-04
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK-EKKKKEKKKEKKKKKKKKKEKKKKKK 243
+ K KEE EK +KE +++ + EK KE++K KK+ +++ +E K++++
Sbjct: 501 QAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKK 267
KK + E++ +E K KK+ +
Sbjct: 561 NKKLELEKEAQEALKALKKEVESI 584
Score = 34.8 bits (80), Expect = 0.045
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
E+ + E K++ +K +KE +++ + +K KE++K KKE +++ EE K+ +
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERE 559
Query: 257 KKKKKKKEK 265
+ KK + EK
Sbjct: 560 RNKKLELEK 568
Score = 32.1 bits (73), Expect = 0.30
Identities = 18/72 (25%), Positives = 42/72 (58%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
E+ + E K+E +K +++ ++K + EK K++EK KK+ E++ E+ K+++
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERE 559
Query: 262 KKEKKKKKDEGR 273
+ +K + + E +
Sbjct: 560 RNKKLELEKEAQ 571
Score = 31.3 bits (71), Expect = 0.68
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 26/110 (23%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK---------EKKKEKKKKKKKKKEK 238
R+ K KK + KE + E+ K K+ ++K +K + + +K K +
Sbjct: 586 RELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPTNFQADKIGDKVRIRYFGQKGKIVQI 645
Query: 239 KKKKK-----------------EKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K EK K KK K K K E K+
Sbjct: 646 LGGNKWNVTVGGMRMKVHGSELEKINKAPPPKKFKVPKTTKPEPKEASLT 695
Score = 27.9 bits (62), Expect = 8.2
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E K+E +K +K+ ++K + E+ KE++K KK+ E++ ++ + R R
Sbjct: 508 EFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 47.4 bits (113), Expect = 5e-06
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKR--KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
N+ KK +K R +EE+E + + E KEKK + +EK
Sbjct: 1497 NVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKN 1556
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEE 251
E+ + K++K KK+ K + E
Sbjct: 1557 IEEDYAESDIKKRKNKKQYKSNTEAE 1582
Score = 45.1 bits (107), Expect = 2e-05
Identities = 18/83 (21%), Positives = 40/83 (48%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ KK ++K+ +KK + E + +++K+ + + + K+KK + +
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQ 1553
Query: 247 KKKEEKKKEKKKKKKKKEKKKKK 269
+K E+ + KK+K KK+ K
Sbjct: 1554 EKNIEEDYAESDIKKRKNKKQYK 1576
Score = 44.3 bits (105), Expect = 5e-05
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ +K +K+K E++ E + + +++++ + + E KEKK + +
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQ 1553
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K E+ + KK+K KK+ K + E
Sbjct: 1554 EKNIEED---YAESDIKKRKNKKQYKSNTEAE 1582
Score = 43.6 bits (103), Expect = 8e-05
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
Q+++ +K+ E E +EEK+ + E + +K+KK + ++K E+
Sbjct: 1503 NQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYA 1562
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ + KK+K KK+ K + + + K+
Sbjct: 1563 ESDIKKRKN-KKQYKSNTEAELDFFLKR 1589
Score = 43.2 bits (102), Expect = 1e-04
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK +K++ ++K E E ++++E + + E KEKK + ++K ++
Sbjct: 1500 KKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEE 1559
Query: 237 E--KKKKKKEKKKKKEEKKKEK 256
+ + KK K KK+ + E
Sbjct: 1560 DYAESDIKKRKNKKQYKSNTEA 1581
Score = 37.0 bits (86), Expect = 0.011
Identities = 14/65 (21%), Positives = 31/65 (47%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K +KKK +KK + + + ++EK+ + + + +EKK + +EK ++
Sbjct: 1500 KKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEE 1559
Query: 270 DEGRR 274
D
Sbjct: 1560 DYAES 1564
Score = 35.8 bits (83), Expect = 0.026
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKE-EEKKEEKKKEKKKEKKKEKKKKEKKK 226
N E G+ E + +K + +EK EE E +K+K KK+ K E +
Sbjct: 1524 NQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAEL 1583
Query: 227 EKKKKK 232
+ K+
Sbjct: 1584 DFFLKR 1589
Score = 35.5 bits (82), Expect = 0.034
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KK + K + + EEK K+KKKK+KKKE++ K++E R
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 34.7 bits (80), Expect = 0.050
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K + K E+K KKKKKKEKKK+++ K+++K
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 34.7 bits (80), Expect = 0.051
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
K + K + ++K KKK+KK+KKKE++ K+EEK +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 34.7 bits (80), Expect = 0.052
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K E K + +EK KKKKKK EKKK++E K++EK +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKK--------EKKKEEEYKREEKAR 766
Score = 34.3 bits (79), Expect = 0.073
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K + K E+K +KKKKK+KKKE++ K++EK +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 34.3 bits (79), Expect = 0.073
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K E K +EK K+KKKK+KKK+E+ K++++ +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 34.3 bits (79), Expect = 0.077
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ E K + +EK K+KKKKEKKKE++ K+++K
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 33.5 bits (77), Expect = 0.12
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 206 EKKKEKK-KEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K E K + +EK KK+KKKEKKK+++ K+E+K +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 33.2 bits (76), Expect = 0.15
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK 209
K + + K K+K+KKE++++EE K+EEK +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 32.8 bits (75), Expect = 0.22
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
K E + + +E+ KK+KKKEKKKE ++ K++EK +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKE--EEYKREEKAR 766
Score = 32.8 bits (75), Expect = 0.23
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K E K +++ KKKKK++KKK+EE K+E+K +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 32.0 bits (73), Expect = 0.41
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K+ E K E+K +KKK+K+KK++++ K+++K +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 31.6 bits (72), Expect = 0.46
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
K K + EE+ K++KKKEKKKE++ ++++K +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 31.6 bits (72), Expect = 0.52
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K + K +EK KKKK+K+KKKEE+ K ++K +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 31.2 bits (71), Expect = 0.68
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
K+ E K + EEK K K+KKKEKKK+E+ K ++K +
Sbjct: 731 KDAEFKISDSVEEKTK---KKKKKEKKKEEEYKREEKAR 766
Score = 31.2 bits (71), Expect = 0.70
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 204 KEEKKKEKKKEKK--------KEKKKKEKKKEKKKKK---KKKKEKKKKKKEKKKKKEEK 252
KE KKK +K +KK KE+ K K K+ KK K K+ KE K+
Sbjct: 920 KELKKKIRKFKKKYFLVLKILKERTKLFLKVSKETKKWIIKSFLFLKRIIKELSKRNPIL 979
Query: 253 KKEKKKKKKKKEKKKKKD 270
++ + E KK+KD
Sbjct: 980 LFGLREIYELNETKKEKD 997
Score = 30.8 bits (70), Expect = 0.99
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K+ + K+ + K E+K KKK+KK+KK+E++ ++++K +
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.8 bits (70), Expect = 1.0
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
K E K E+K +KKKK++KK++++ K+++K +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.1 bits (68), Expect = 1.5
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ K ++K KK+KKK+K+++++ K+++K + E
Sbjct: 732 DAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 30.1 bits (68), Expect = 1.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK + K + K E+K +KKKKK+KK++++ K E + R
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 29.7 bits (67), Expect = 2.4
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ E K + +EK K+KKK++KKKE++ ++++K +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 29.3 bits (66), Expect = 2.7
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+ KK +KKK +KK E + + +E+K+ + + + +K+KK +
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLE 1547
Score = 28.5 bits (64), Expect = 4.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
++K K+ K + EK K+KKK K + K E KK + K++
Sbjct: 1023 TEKKIKDLTDRTKTIRNQIEKITKEKKKITNTINISPNKTSYDSKIIESSKKIWQILKRR 1082
Query: 268 K 268
Sbjct: 1083 N 1083
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 47.4 bits (113), Expect = 5e-06
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ER K R +R+ + EE + ++++ K++ K + E ++ E++ + + K +
Sbjct: 816 EERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFV 875
Query: 238 KKKKKKEKKKKK---------------EEKKKEKKKKKKKKEKKKKKDE 271
+ K +K K E K+ EK KKKKK+ +K +E
Sbjct: 876 EFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEE 924
Score = 46.6 bits (111), Expect = 9e-06
Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK---EKKKEKKKKEKKK 226
+ + ++ + R ++ + + EE E E+++ K+E K E ++ +++ +
Sbjct: 809 DQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNIN 868
Query: 227 EKKKKKKKKKEKKKKKKEKK----------KKKEEKKKEKKKKKKKKEKKKKKDE 271
E K + + K KK + +E K+++K KKKK+ +K DE
Sbjct: 869 ENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDE 923
Score = 45.4 bits (108), Expect = 2e-05
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 12/112 (10%)
Query: 167 DNLEYGYKGGKKERRKQRRRKR--------KRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
E + R + K +++ + E E ++ E++ + E K E
Sbjct: 814 SEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNE 873
Query: 219 KKKKEKKKEKKKKKKKKKEKKKK----KKEKKKKKEEKKKEKKKKKKKKEKK 266
+ + +K K K+ K E K+ ++ KK+KK +K E+
Sbjct: 874 FVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEEA 925
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 46.7 bits (111), Expect = 7e-06
Identities = 23/63 (36%), Positives = 46/63 (73%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
KE E++ +++EE++KE+KKE++++ KE++ +++++K++KK+K KK KE + E
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLN 88
Query: 254 KEK 256
K K
Sbjct: 89 KTK 91
Score = 45.5 bits (108), Expect = 2e-05
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K K +EEE+EE++++++++EK +K++E ++E+K+EKKKK KK KE + +
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLN 88
Query: 247 KKK 249
K K
Sbjct: 89 KTK 91
Score = 43.6 bits (103), Expect = 6e-05
Identities = 22/64 (34%), Positives = 46/64 (71%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E+E ++E EE+++EK+++K++E+K +K++E ++++K+++KKK KK K+ E +
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87
Query: 255 EKKK 258
K K
Sbjct: 88 NKTK 91
Score = 43.2 bits (102), Expect = 8e-05
Identities = 23/58 (39%), Positives = 44/58 (75%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
EK+ EK+ ++++E++K++KK++E+K KE++ +EE+K+EKKKK KK ++ + E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Score = 43.2 bits (102), Expect = 9e-05
Identities = 25/64 (39%), Positives = 46/64 (71%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E+E E+E +E+++E+K+EKK+E++K K+E+ ++++K+EKKKK K+ K+ E +
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87
Query: 256 KKKK 259
K K
Sbjct: 88 NKTK 91
Score = 39.0 bits (91), Expect = 0.002
Identities = 22/64 (34%), Positives = 45/64 (70%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
EK+ EK+ ++E+++KE+KKE+++K K+E+ +++EK++KK++ KK K+ + +
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87
Query: 266 KKKK 269
K K
Sbjct: 88 NKTK 91
Score = 38.2 bits (89), Expect = 0.004
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E EKE +EE E++KE+KKE+++K KE++ ++++KE+KKKK +K K+ + +
Sbjct: 30 EVEKEVPDEEE---EEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Query: 256 KKKKK 260
K K
Sbjct: 87 LNKTK 91
Score = 37.8 bits (88), Expect = 0.005
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+KEE+++EEEK +K++E +E++KE+KKK+ KK K+ + + K K + K+
Sbjct: 43 EKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRNPKDVT 102
Query: 253 KKEKKK 258
K+E
Sbjct: 103 KEEYAA 108
Score = 36.3 bits (84), Expect = 0.014
Identities = 19/63 (30%), Positives = 41/63 (65%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE K+ + + + K+E++E+EE+ +++++ ++E+K+EKKKK KK ++ + +
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLN 88
Query: 238 KKK 240
K K
Sbjct: 89 KTK 91
Score = 28.6 bits (64), Expect = 4.1
Identities = 13/50 (26%), Positives = 31/50 (62%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+++ K+ ++ +++E +E+EE+++++KK +K KE E + K K
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 46.0 bits (109), Expect = 8e-06
Identities = 30/101 (29%), Positives = 40/101 (39%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K K K +K K K ++ ++K + KK K K +K K+ KK
Sbjct: 201 KAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKAL 260
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KK K KK KK K K K K K K K K + +
Sbjct: 261 KKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGK 301
Score = 44.5 bits (105), Expect = 3e-05
Identities = 27/96 (28%), Positives = 36/96 (37%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K+ K K K+ + + +K +KK K K+ K K KK KK
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKT 255
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KK KK K KK ++ K K K K K
Sbjct: 256 AKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKG 291
Score = 41.0 bits (96), Expect = 4e-04
Identities = 26/102 (25%), Positives = 40/102 (39%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K ++ +++ K ++ K K +K K+ K+ K+ K KK KK K
Sbjct: 218 KAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKA 277
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K K K K K + KKK KK + K +R
Sbjct: 278 AAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRG 319
Score = 40.6 bits (95), Expect = 5e-04
Identities = 26/100 (26%), Positives = 40/100 (40%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G +K + + K+ K + ++ K+K + KK K K KK KK
Sbjct: 195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKK 254
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK KK K K+ KK K K + K +G+ +
Sbjct: 255 TAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAK 294
Score = 39.9 bits (93), Expect = 0.001
Identities = 29/102 (28%), Positives = 43/102 (42%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K G K+ + + K+ KK+ + K+ K K KK +K K+ K+ K K
Sbjct: 209 KSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVK 268
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K +K K K K K + K K KKK KK + +
Sbjct: 269 KAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAK 310
Score = 36.8 bits (85), Expect = 0.008
Identities = 30/93 (32%), Positives = 40/93 (43%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ K + K+ +K ++ ++ K KK KK K K K K K K K KK
Sbjct: 238 AKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKK 297
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ KK K K K K+ K KK KK K
Sbjct: 298 KAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTK 330
Score = 36.8 bits (85), Expect = 0.009
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK--KKEKKKEKKKK 231
K K ++ K K K+ ++ ++ ++ K KK KK K K K K
Sbjct: 230 KAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKAT 289
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K K K KKK K+ + K K K+ K KK KK +R
Sbjct: 290 KGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKR 332
Score = 36.4 bits (84), Expect = 0.012
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK- 230
G K + + ++ K+K K ++ K K KK +K +K K+ K KK
Sbjct: 211 GAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKA 270
Query: 231 -KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
KK K K K K K + K +KK KK K K +
Sbjct: 271 AKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAK 314
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 44.9 bits (107), Expect = 8e-06
Identities = 21/89 (23%), Positives = 52/89 (58%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + + + ++ +K+ EE K+ + + + EK K+ ++E +++ + E+ K+ +K+
Sbjct: 60 PSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKEL 119
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+K K + EK +K + ++ EK K++ K K
Sbjct: 120 KKLKAELEKYEKNDPERIEKLKEETKVAK 148
Score = 44.5 bits (106), Expect = 1e-05
Identities = 23/87 (26%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K K + E+ +KE E+ +++ E + + +K KK +E+ +E+ + ++ K+ +K+ K+ K
Sbjct: 64 LNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLK 123
Query: 247 KKKEEKKK--EKKKKKKKKEKKKKKDE 271
+ E+ +K ++ +K K+E K K+
Sbjct: 124 AELEKYEKNDPERIEKLKEETKVAKEA 150
Score = 34.1 bits (79), Expect = 0.037
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK------KKKEEKKKEK 256
+ K K + +K +K+ +E K+ + + + ++ KK ++E + ++ ++ +KE
Sbjct: 60 PSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKEL 119
Query: 257 KKKKKKKEKKKKKD 270
KK K + EK +K D
Sbjct: 120 KKLKAELEKYEKND 133
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 46.3 bits (110), Expect = 8e-06
Identities = 25/94 (26%), Positives = 53/94 (56%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
++R+K+ +++ + ++K+ E+E K+ EK++ +E+KK+ ++ K+ K+K+ ++
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAA 138
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K K + E K+ KK + KKK E
Sbjct: 139 AKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAE 172
Score = 43.6 bits (103), Expect = 6e-05
Identities = 25/85 (29%), Positives = 36/85 (42%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K+K E E ++ E KKK + + K + +KK E + KKK E KKK + K
Sbjct: 168 KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA 227
Query: 251 EKKKEKKKKKKKKEKKKKKDEGRRR 275
K + K +K K E
Sbjct: 228 AKAAAEAKAAAEKAAAAKAAEKAAA 252
Score = 42.5 bits (100), Expect = 1e-04
Identities = 25/94 (26%), Positives = 41/94 (43%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K + + +R +K E K++ + E KK + KKK + + K + KKK +
Sbjct: 146 KAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEA 205
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E KKK + KKK + + K E K +
Sbjct: 206 EAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAE 239
Score = 42.1 bits (99), Expect = 2e-04
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK---EKKKEKKKEKKKKEKKKEKKKKKK 233
K +++ + + +K E K++ + E K E KK+ + E KKK + KKK
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAA 221
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ K K + K EK K +K K +
Sbjct: 222 EAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
Score = 41.7 bits (98), Expect = 3e-04
Identities = 21/84 (25%), Positives = 36/84 (42%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+KK E E ++ E KK+ + E + + KKK + + KKK + KKK + K
Sbjct: 167 AKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAA 226
Query: 251 EKKKEKKKKKKKKEKKKKKDEGRR 274
K + K ++ K +
Sbjct: 227 AAKAAAEAKAAAEKAAAAKAAEKA 250
Score = 41.3 bits (97), Expect = 3e-04
Identities = 22/90 (24%), Positives = 38/90 (42%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+K + KK+ E + +K + K+K + + K E KK+ + + KKK + KKK
Sbjct: 161 KKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAA 220
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K K + K EK +
Sbjct: 221 AEAKAAAAKAAAEAKAAAEKAAAAKAAEKA 250
Score = 40.6 bits (95), Expect = 5e-04
Identities = 20/89 (22%), Positives = 57/89 (64%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
R+Q+++K ++ +++ ++KE+++ EE ++++ E+++ K+ ++++ +++KK+ +E K
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ K+K+ EE + K K + + K
Sbjct: 126 QAALKQKQAEEAAAKAAAAAKAKAEAEAK 154
Score = 39.8 bits (93), Expect = 9e-04
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 178 KERRKQRRRKRKRKRKKEEEEK---EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K+ K+R +++K++ EE K ++K+ E+ K K K + E K+ KK
Sbjct: 104 KQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKA 163
Query: 235 KKEKKKKKKEKKKKKEE----KKKEKKKKKKKKEKKKKKDE 271
E KKK + + KK KK E + K + KKK E
Sbjct: 164 AAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAE 204
Score = 39.8 bits (93), Expect = 0.001
Identities = 22/92 (23%), Positives = 45/92 (48%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K ++ R ++ K + ++++++ EE K+ K+K+ E+ K K + + + K
Sbjct: 95 KQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAK 154
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+ KK + KKK E + KK + K+K
Sbjct: 155 RAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKK 186
Score = 39.0 bits (91), Expect = 0.002
Identities = 23/93 (24%), Positives = 45/93 (48%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K++ ++ ++ K+K+ EE + K K + + K+ K+ E KKK + +
Sbjct: 116 QKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEA 175
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KK + KKK + E + + KKK + + K
Sbjct: 176 AKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAK 208
Score = 39.0 bits (91), Expect = 0.002
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
++KQ + + K+ ++E +E+K++ ++ K+ K+K+ +E + K K E +
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAE 152
Query: 240 KKKKE---KKKKKEEKKKEKKKKKKKKEKKKKK 269
K+ KK E KKK + + KK + KK
Sbjct: 153 AKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKK 185
Score = 38.2 bits (89), Expect = 0.003
Identities = 19/94 (20%), Positives = 58/94 (61%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+Q R++++++ + E++ +KKE+++ E+ ++K+ ++++ K+ EK++ ++++K+ +
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K+ ++K+ E+ K K K + +R
Sbjct: 122 EAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
Score = 35.6 bits (82), Expect = 0.025
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK-KKEK 245
K + + K+ ++ E KKK + + KK + +KK E + K E KKK + E
Sbjct: 148 KAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEA 207
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDE 271
KKK + K+K + K K E
Sbjct: 208 KKKAAAEAKKKAAAEAKAAAAKAAAE 233
Score = 32.5 bits (74), Expect = 0.22
Identities = 16/82 (19%), Positives = 32/82 (39%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K E +K+ + K E ++K E + ++K + K+K + K K + K
Sbjct: 177 KKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKA 236
Query: 234 KKKEKKKKKKEKKKKKEEKKKE 255
++ K +K + E
Sbjct: 237 AAEKAAAAKAAEKAAAAKAAAE 258
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 46.2 bits (110), Expect = 8e-06
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++++++ K++ K++ KK KK + E E ++ + K+ KKKKKK+KKKKK+
Sbjct: 10 VKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKK 69
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
+
Sbjct: 70 NLGEAYDLAYDLPVVWSSAAF 90
Score = 45.1 bits (107), Expect = 2e-05
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK------KKEKKKKKKKKKEKKKKKKE 244
+ E E +++K++ K+K KK+ KK KK + + + ++ + K+ KKKK+
Sbjct: 2 MNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKK 61
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKK 269
KKKKK++K +
Sbjct: 62 KKKKKKKKNLGEAYDLAYDLPVVWS 86
Score = 45.1 bits (107), Expect = 2e-05
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEK-------KKKEKKKEKKKKKKKKKEKKKKKKEK 245
+ +++K++ K++ KK+ KK KK + + +E + K+ KK+KKKKKK+K
Sbjct: 8 NEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKK 67
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKD 270
KK E +D
Sbjct: 68 KKNLGEAYDLAYDLPVVWSSAAFQD 92
Score = 43.9 bits (104), Expect = 6e-05
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ E + +++K++ K++ K+K K+ KK + + + ++ + K+ KKK++KK
Sbjct: 4 ENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKK 63
Query: 254 KEKKKKKKKKEKKKKKDEG 272
K+KKKK + D
Sbjct: 64 KKKKKKNLGEAYDLAYDLP 82
Score = 43.5 bits (103), Expect = 6e-05
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E E + +++K++ K++ K+K KK KK + + ++ + K+ +KKK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60
Query: 255 EKKKKKKKKEKKKKKD 270
+KKKKKKKK + D
Sbjct: 61 KKKKKKKKKNLGEAYD 76
Score = 40.9 bits (96), Expect = 4e-04
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+ E + +++K++ K+K K+K K+ KK + + ++ E K+ KKKK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60
Query: 260 KKKKEKKKKKDEGRRR 275
KKKK+KKKK
Sbjct: 61 KKKKKKKKKNLGEAYD 76
Score = 39.7 bits (93), Expect = 0.001
Identities = 19/86 (22%), Positives = 39/86 (45%)
Query: 166 GDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
G+N K K++ +++ K+ +K +++ E E ++ + K+ K+KKKK+KK
Sbjct: 6 GENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKK 65
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEE 251
K+KK + +
Sbjct: 66 KKKKNLGEAYDLAYDLPVVWSSAAFQ 91
Score = 39.7 bits (93), Expect = 0.001
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 166 GDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+N E K K++ +++ +K+ +K KK+ ++ + E + ++ E K+ KKK+KK
Sbjct: 3 NENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKK 62
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKK 249
K+KKKKK +
Sbjct: 63 KKKKKKKNLGEAYDLAYDLPVVWS 86
Score = 37.4 bits (87), Expect = 0.007
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K++ KQ+ K+K K+ K++ + ++ E E ++ + K+ KK KK+KKKKKKKK
Sbjct: 13 QKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKK--KKKKKKKKKKKN 70
Query: 237 EKKKKKKEKKKKKEEKKKE 255
+
Sbjct: 71 LGEAYDLAYDLPVVWSSAA 89
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 44.4 bits (105), Expect = 9e-06
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E+ E+++KE KE ++++ K KK++K+KK+KK EK KKK K K KK KK
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 261 KKKEKKK 267
KKE+ K
Sbjct: 152 TKKEEGK 158
Score = 44.4 bits (105), Expect = 9e-06
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
EE E+E+KE K+ ++KE K KK+K++KKEKK +K K+K K + KK KK
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 256 KKKKKKK 262
KK++ K
Sbjct: 152 TKKEEGK 158
Score = 44.0 bits (104), Expect = 1e-05
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E+ ++++KE KE ++KE K KK+KK+KK++K +K KKK + K KK KK
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 265 KKKKKDE 271
KK++ +
Sbjct: 152 TKKEEGK 158
Score = 43.6 bits (103), Expect = 2e-05
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E+E++E KE ++KE K KK++K+KKEKK +K KKK + K +K KK KK
Sbjct: 95 SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKK 154
Query: 255 EKKK 258
E+ K
Sbjct: 155 EEGK 158
Score = 43.2 bits (102), Expect = 2e-05
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
EE ++E+K+ K+ ++KE K +K+K++KK+KK ++ KKK K K KK KK
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 260 KKKKEKK 266
KK+E K
Sbjct: 152 TKKEEGK 158
Score = 40.9 bits (96), Expect = 2e-04
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EE EKE+++ ++ +EK+ K K++KK++K+K+ +K KKK K K KK ++
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTT 152
Query: 255 EKKKKK 260
+K++ K
Sbjct: 153 KKEEGK 158
Score = 38.6 bits (90), Expect = 8e-04
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+++++E KE E+KE K +K+K++KKEKK EK +KK K K KK K+ KKE
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 251 EKK 253
E K
Sbjct: 156 EGK 158
Score = 38.2 bits (89), Expect = 0.001
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
++++K+ +E EE++ + KKEKK++K+K+ +K KK+ K K +K KK KK+
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 249 KEE 251
+ +
Sbjct: 156 EGK 158
Score = 36.3 bits (84), Expect = 0.007
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K +++ KE EEKE K +++KKEKK++K EK K+K + K KK KK K+++
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEE 156
Query: 247 KK 248
K
Sbjct: 157 GK 158
Score = 35.9 bits (83), Expect = 0.009
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
++++K +E E++E K +K+K++KKEKK +K +KK K K KK KK +K+
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 247 KKK 249
+ K
Sbjct: 156 EGK 158
Score = 33.2 bits (76), Expect = 0.071
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
++ +K+ ++ + K + +++++EKKE+K EK +KK K K K+ KK KKE
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 238 KKK 240
+ K
Sbjct: 156 EGK 158
Score = 32.4 bits (74), Expect = 0.13
Identities = 19/66 (28%), Positives = 40/66 (60%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E ++ +++ ++ +++E K +++K+EKK++K EK +KK + K KK KK
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTT 152
Query: 239 KKKKKE 244
KK++ +
Sbjct: 153 KKEEGK 158
Score = 32.0 bits (73), Expect = 0.17
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+K++K+ K+ ++++ K K++KK+K+EKK +K KKK K K +
Sbjct: 95 SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKK 145
Score = 30.1 bits (68), Expect = 0.63
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+KE K+ K K KKE++EK+E+K EK +KK K + K+ K+ KK++ K
Sbjct: 99 QKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEGK 158
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 44.4 bits (105), Expect = 1e-05
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
EEEE EEE +E ++E E K E K+K+K++ K K +K+K K + KK K K
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Score = 44.4 bits (105), Expect = 1e-05
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
E EE+ ++ E++ + K + KEKKK+E K K +K+K K E KK K K K
Sbjct: 100 ETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 42.8 bits (101), Expect = 3e-05
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+++EEE +EE E ++E E K + K+K+K++ K K EK+K K E KK K K
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKP 151
Query: 254 K 254
K
Sbjct: 152 K 152
Score = 41.3 bits (97), Expect = 1e-04
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
R+ ++E+EE ++E + ++++ + K + K+KKK+E K K EK+K K
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTES--------KEKKKREVPKPKTEKEKPK 140
Query: 250 EEKKKEKKKKKK 261
E KK K K K
Sbjct: 141 TEPKKPKPSKPK 152
Score = 40.5 bits (95), Expect = 2e-04
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
E +E++ E++ ++ +++ + K + K+KKK+E K K EK+K K + KK K
Sbjct: 90 ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPS 149
Query: 266 KKK 268
K K
Sbjct: 150 KPK 152
Score = 35.5 bits (82), Expect = 0.010
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E ++E + +++ + K + K+KKK E K K +K+K K + KK
Sbjct: 100 ETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
Score = 34.3 bits (79), Expect = 0.027
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++ + +++ + K + ++KKK+E K + +K+K K E KK K
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 31.3 bits (71), Expect = 0.32
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+E++ +++ E +++ + K + ++KK+++ K K EK+K K E
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 30.1 bits (68), Expect = 0.79
Identities = 12/47 (25%), Positives = 29/47 (61%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E++ E++ + ++E + K + K+K++++ K K +K+K K + K
Sbjct: 98 EEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144
Score = 28.6 bits (64), Expect = 2.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ + + E KE++K+E K + +KEK K + KK K
Sbjct: 112 EDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 46.4 bits (110), Expect = 1e-05
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 178 KERRKQRRRKRKRKRKK-EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ +K + +++K+ +KK ++ + + K K+ K K K +K KKK
Sbjct: 70 KDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKI 129
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K +KKKK K E K K K
Sbjct: 130 TVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 45.6 bits (108), Expect = 2e-05
Identities = 24/102 (23%), Positives = 42/102 (41%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
D+L K + ++ K+ K ++ K+ + K++KK +KK + K
Sbjct: 41 DSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSK 100
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K+ +K K K ++ KKK K K+KKK
Sbjct: 101 NNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKV 142
Score = 45.2 bits (107), Expect = 2e-05
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK----------KEK 238
K+ +K + + ++ K+ K K+KKK KKK + K K K
Sbjct: 58 KKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRK 117
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K EK KKK K KKKKK K +
Sbjct: 118 PKPKTEKLKKKITVNKSTNKKKKKVLSSKDELI 150
Score = 43.7 bits (103), Expect = 8e-05
Identities = 22/93 (23%), Positives = 41/93 (44%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK K ++ +K + + ++ ++ K ++KKK KKK + + K+
Sbjct: 50 KKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGP 109
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ K K E+ KK+ K +KKKK
Sbjct: 110 LAISLMRKPKPKTEKLKKKITVNKSTNKKKKKV 142
Score = 42.1 bits (99), Expect = 2e-04
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK-KKKKKKK 235
KK + KQ+++ +K+ ++ + + K K+ +K + K EK KKK
Sbjct: 73 KKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVN 132
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKK 261
K KKKK+ K+E K K K
Sbjct: 133 KSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 27.9 bits (62), Expect = 8.2
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ + + K+ +K EK KK KK K K+ KK K K+KKK KKK
Sbjct: 32 KIRLESDIKDSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKK---TKLKQKKKIKKKLH 88
Query: 265 KKKKKDEGRR 274
D
Sbjct: 89 IDDDYDNFFD 98
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 45.8 bits (109), Expect = 1e-05
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 21/89 (23%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK-------KKKEKKKKK---- 249
EE + EK++++ +++K +K +K++EKKKK+ +K EK K K++E K
Sbjct: 551 EELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAFDET 610
Query: 250 ----------EEKKKEKKKKKKKKEKKKK 268
E KKE+KK K+ +K+ K
Sbjct: 611 GLPTHDADGEEISKKERKKLSKEYDKQAK 639
Score = 45.0 bits (107), Expect = 2e-05
Identities = 24/64 (37%), Positives = 44/64 (68%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K + K+E ++EK++KE KE+K+ +K KK+++KKKKE +K ++ K + K++++K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYS 605
Query: 268 KKDE 271
DE
Sbjct: 606 AFDE 609
Score = 43.1 bits (102), Expect = 1e-04
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK-KKKEKK---------- 225
++E+ ++ K +++ +K ++++E++KKE +K EK K E K++E K
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAFDETGLP 613
Query: 226 -KEKKKKKKKKKEKKK--KKKEKKKKKEEKKKEKKKKK 260
+ ++ KKE+KK K+ +K+ K E+ K K
Sbjct: 614 THDADGEEISKKERKKLSKEYDKQAKLHEEYLAKGGKS 651
Score = 40.8 bits (96), Expect = 6e-04
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
E+K + K +K++ +++KE+K+ K++K+ +K KK+E+KKKKE +K EK K
Sbjct: 536 EDKPDGPSVWKLDDKEELQREKEEKEA---LKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 38.5 bits (90), Expect = 0.003
Identities = 14/42 (33%), Positives = 31/42 (73%)
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K +K++ ++EK++K+ K++++ +K KK+E+KKKK+ +
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLE 587
Score = 36.2 bits (84), Expect = 0.015
Identities = 14/44 (31%), Positives = 32/44 (72%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K KE+ +++KE+K+ +E+K+ +K KK++++KKK+ ++ +
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKA 589
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 43.7 bits (104), Expect = 1e-05
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKK-EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
++K+ +K + E + EE K+ K+ E KKE K EK ++K +K K K EKKK K
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAK 91
Query: 243 KEKKKKK 249
KE+ K +
Sbjct: 92 KEEPKPR 98
Score = 41.4 bits (98), Expect = 1e-04
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 207 KKKEKKK--------EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
KKK KK E+ K+ K+ + KK+ K EK +KK EK K K EKKK KK+
Sbjct: 34 KKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKE 93
Query: 259 KKKKK 263
+ K +
Sbjct: 94 EPKPR 98
Score = 41.0 bits (97), Expect = 2e-04
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 211 KKKEKKKE-------KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KKK KK E ++ K+ K+ + KKE K EK +KK EK K K +KKK K
Sbjct: 34 KKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAW--EKAEKKAEKAKAKAEKKKAK 91
Query: 264 EKKKKK 269
+++ K
Sbjct: 92 KEEPKP 97
Score = 40.6 bits (96), Expect = 2e-04
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+K+K ++ E E E+ K+ K+ + K++ K +K +KK ++ K K ++KK K
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAK 91
Query: 249 KEEKKK 254
KEE K
Sbjct: 92 KEEPKP 97
Score = 38.7 bits (91), Expect = 8e-04
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+K+K K+ + E E+ ++ K+ + +K+ K +K +KK EK K K E
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKA-----EKAKAKAE 86
Query: 245 KKKKKEEKKK 254
KKK K+E+ K
Sbjct: 87 KKKAKKEEPK 96
Score = 31.3 bits (72), Expect = 0.29
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK 209
K+ K + K+ K + + ++++ K+E+ K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 31.0 bits (71), Expect = 0.39
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
KE + +K + E+ EK+ EK + K ++KK +K++ K +
Sbjct: 55 KESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 30.6 bits (70), Expect = 0.43
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
K+ ++ K++ + EK E+K E K + K EKKK KK++ K +
Sbjct: 52 KDLKESLEAALLDKKELKAWEKAEKKAE--KAKAKAEKKKAKKEEPKPR 98
Score = 29.8 bits (68), Expect = 0.93
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK 209
KKE + + ++K ++ K + EK++ KKEE K
Sbjct: 64 DKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 29.0 bits (66), Expect = 1.5
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 219 KKKKEKKKEKKKKK--KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+KKK KK E + ++ K+ K+ + K+E K +K +KK EK K K E ++
Sbjct: 33 QKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKA-WEKAEKKAEKAKAKAEKKKA 90
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 45.2 bits (107), Expect = 2e-05
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 177 KKERRKQRRRKRKRK--RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
KK RR R R E E E KK + EK + K + KK+ +K++
Sbjct: 301 KKAFLWTLRRNRLRMIITPWRAPELHAENAEIKK-TRTAEKNEAKAR--KKEIAQKRRAA 357
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
++E ++ ++++ + + ++ K K+K
Sbjct: 358 EREINREARQERAAAMARARARRAAVKAKKK 388
Score = 40.6 bits (95), Expect = 6e-04
Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 20/97 (20%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKK-------------------EKKKEKKKKEKKKEKKKK 231
+++ + EK++EKK ++ E KK + EK + K +K
Sbjct: 289 EQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTA-EKNEAKARK 347
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K+ ++++ ++E ++ +++ + + + K
Sbjct: 348 KEIAQKRRAAEREINREARQERAAAMARARARRAAVK 384
Score = 40.2 bits (94), Expect = 7e-04
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEE--------KKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
E+R Q R K+K K+ + + E E + KK +K + K +KK
Sbjct: 289 EQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKK 348
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ +K+ +++ ++ ++E + + ++ K KK
Sbjct: 349 EIAQKRRAAEREINREARQERAAAMARARARRAAVKAKK 387
Score = 38.7 bits (90), Expect = 0.002
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 177 KKERR------KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
KK R K R+++ +KR+ E E E ++E+ + + + K KKK
Sbjct: 333 KKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLID 392
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ + ++ K + + + ++
Sbjct: 393 ASPNEDTPSENEESKGSPPQVEATTTAEPNREP 425
Score = 38.7 bits (90), Expect = 0.002
Identities = 11/70 (15%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 184 RRRKRKRKRKKEEEE--KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K+ R +K E + K+E ++ + E++ ++ +++ + ++ K KKK
Sbjct: 330 AEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKG 389
Query: 242 KKEKKKKKEE 251
+ ++
Sbjct: 390 LIDASPNEDT 399
Score = 36.8 bits (85), Expect = 0.009
Identities = 15/78 (19%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK--------KKKKEKKKKKKEKKKKKEEK 252
+E KE +++ + ++K+K+KK ++ + + + + + KK + EK
Sbjct: 281 DEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEK 340
Query: 253 KKEKKKKKKKKEKKKKKD 270
+ K +KK+ +K++ +
Sbjct: 341 NEAKARKKEIAQKRRAAE 358
Score = 34.1 bits (78), Expect = 0.076
Identities = 17/104 (16%), Positives = 43/104 (41%), Gaps = 18/104 (17%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE-----------------KKKKK 232
RK +E KE ++ + +K+++KK ++ + KK
Sbjct: 275 RKYPLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKK 334
Query: 233 KKKKEKKKKKKEKKKKKEEKKK-EKKKKKKKKEKKKKKDEGRRR 275
+ EK + K KK+ ++++ E++ ++ ++++ R
Sbjct: 335 TRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARA 378
Score = 33.7 bits (77), Expect = 0.082
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K K R+K+ +KR+ ++ E +E+ + + + + KKK + +
Sbjct: 340 KNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKK-GLIDASPNED 398
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E ++ K + + E ++
Sbjct: 399 TPSENEESKGSPPQVEATTTAEPNREP 425
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 44.5 bits (106), Expect = 2e-05
Identities = 12/60 (20%), Positives = 34/60 (56%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K K + ++ E++ K+++ +K+K ++E+K K K +KK++ + ++ + + +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Score = 44.1 bits (105), Expect = 2e-05
Identities = 13/73 (17%), Positives = 38/73 (52%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
RK+ +E + K + ++ E++ +K++ +++K ++++ K K +KK K + +K + +
Sbjct: 100 RKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Query: 250 EEKKKEKKKKKKK 262
+ +
Sbjct: 160 PVSDISELTVGQA 172
Score = 43.8 bits (104), Expect = 3e-05
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
RK+ EE K K + ++ E++ +K++ +KEK +++K K K +KK+K +K + +
Sbjct: 100 RKQLEEAKA--KVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
Query: 252 KKKEKKKKKKKKEKKKK 268
+ + K
Sbjct: 158 HTPVSDISELTVGQAVK 174
Score = 42.6 bits (101), Expect = 7e-05
Identities = 20/75 (26%), Positives = 42/75 (56%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
E EEE E +K+ ++ K K + ++ +++ KK++ +KEK +++ K K K +KK K
Sbjct: 89 GELEEEHVEHARKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRK 148
Query: 257 KKKKKKKEKKKKKDE 271
+ +K + + +
Sbjct: 149 PRAQKPEPQHTPVSD 163
Score = 42.2 bits (100), Expect = 9e-05
Identities = 16/70 (22%), Positives = 35/70 (50%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K + + +R +++ K+++ EKE+ + E+K + K +KK K + +K + + E
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Query: 238 KKKKKKEKKK 247
+ K K
Sbjct: 167 LTVGQAVKVK 176
Score = 40.3 bits (95), Expect = 4e-04
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKK-KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+E K K + + +++ KK+E EK+K ++++K K K ++K+K + +K + +
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Query: 263 KEKKKKKDE 271
+
Sbjct: 164 ISELTVGQA 172
Score = 38.0 bits (89), Expect = 0.002
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K + +R +++ +K E E++K +++ K K K ++K+K + +K + + E
Sbjct: 109 KVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELT 168
Query: 247 KKKEEKKK 254
+ K K
Sbjct: 169 VGQAVKVK 176
Score = 37.2 bits (87), Expect = 0.005
Identities = 10/65 (15%), Positives = 33/65 (50%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+ E++ +K++ +++K +++++ K + +KK+K + +K + + + +
Sbjct: 112 AQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQ 171
Query: 258 KKKKK 262
K K
Sbjct: 172 AVKVK 176
Score = 36.4 bits (85), Expect = 0.008
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K K + ++ E++ KK+E +KE+ + ++K K K +KK+K ++
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKP 154
Score = 34.9 bits (81), Expect = 0.023
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ +R +Q+ +KR E ++E+ ++K K K +K++K + +K E +
Sbjct: 111 QAQRAEQQAKKR------EAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164
Query: 237 EKKKKKKEKKKK 248
+ + K K
Sbjct: 165 SELTVGQAVKVK 176
Score = 27.2 bits (61), Expect = 8.8
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K+ +E K K + ++ E++ KK++ +K+K R R
Sbjct: 100 RKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRER 136
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 44.2 bits (105), Expect = 2e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+K +R +KKE + KE E +KKK E++K+KKKK+ K+KK KK K
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 40.0 bits (94), Expect = 5e-04
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
KK E+ K+K+ + K+ E ++KKK ++EKKKKKK+ KKK+ KK K
Sbjct: 151 KKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 39.2 bits (92), Expect = 9e-04
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK ++ +KK+ K+ E + KK+ +EEKKK+KKK KKK+ KK G +
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 36.1 bits (84), Expect = 0.011
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
KK ++ +KK+ K+ + KKK +E+KKKKK+K KK++ KK K
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 35.4 bits (82), Expect = 0.015
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+K R K+K KE E ++KK +E+KK+KKK+ KK+K K+ K
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 34.6 bits (80), Expect = 0.029
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
++ KKK+ KE + + KKK ++++KKKKK+ KK+K KK K
Sbjct: 154 ERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 33.0 bits (76), Expect = 0.089
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 211 KKKEKKKEKKK---KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KK ++ +KK+ KE + + KKK E++KKKK+KK K++K K+ K
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 33.0 bits (76), Expect = 0.092
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
KK E+ K+K+ + K+ + ++KKK +++KKK+KKK K+KK KK K
Sbjct: 151 KKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 44.3 bits (105), Expect = 2e-05
Identities = 28/123 (22%), Positives = 72/123 (58%), Gaps = 23/123 (18%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K+ +R+++ +K +++K+E EKE E+ E +++ K++ ++ ++K ++ K++ K K
Sbjct: 95 AKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHK 154
Query: 236 K-----------------------EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K E KK+ +E + KK +++++K++++++K++KK+++E
Sbjct: 155 KEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEE 214
Query: 273 RRR 275
R+
Sbjct: 215 ERK 217
Score = 34.7 bits (80), Expect = 0.038
Identities = 25/98 (25%), Positives = 61/98 (62%), Gaps = 9/98 (9%)
Query: 178 KERRKQRRRKRKRKRKKEEEE---------KEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+++ +Q ++R K KKE E + E+ +++ KK+ ++ E KK +++++K
Sbjct: 139 RQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQK 198
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
++++++K+ KK++++E++K+K E+ +K K K+ K
Sbjct: 199 REEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
Score = 29.7 bits (67), Expect = 1.6
Identities = 14/69 (20%), Positives = 48/69 (69%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
G K R + + K++ ++ E +K +++++++++E++K++KK+++++E+K++ ++ +
Sbjct: 166 SGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQ 225
Query: 234 KKKEKKKKK 242
K + K++
Sbjct: 226 KWMKNVKQR 234
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 43.5 bits (103), Expect = 2e-05
Identities = 28/84 (33%), Positives = 64/84 (76%), Gaps = 3/84 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK K+R + +++ ++++ E EEE++EE+ KK E+K+E ++KE+++ +++++KKK+
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREER---KKLEEKREGERKEEEELEEEREKKKE 57
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKK 260
E+++K++E++ +KE+++ EK K
Sbjct: 58 EEERKEREEQARKEQEEYEKLKSS 81
Score = 43.5 bits (103), Expect = 3e-05
Identities = 22/73 (30%), Positives = 59/73 (80%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K+ K+ K E+K+ ++++++ +E+++E++KK ++K+E ++K++E+ +++ EKKKE+++
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 259 KKKKKEKKKKKDE 271
+K+++E+ +K+ E
Sbjct: 61 RKEREEQARKEQE 73
Score = 43.1 bits (102), Expect = 3e-05
Identities = 27/78 (34%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK-KKKEKKKEKKKKKK 233
G KK + + ++ R+++R+ EEEE+EE KK E+K+E ++++++E +++EKKKE++++K+
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63
Query: 234 KKKEKKKKKKEKKKKKEE 251
++++ +K+++E +K K
Sbjct: 64 REEQARKEQEEYEKLKSS 81
Score = 42.8 bits (101), Expect = 4e-05
Identities = 29/89 (32%), Positives = 65/89 (73%), Gaps = 2/89 (2%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K +K+ + + K+ R+++ E +EEE++E KK E+K+E E+K++E+ +E+++KKK++
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREG--ERKEEEELEEEREKKKEE 58
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+E+K+++++ +K++EE +K K ++E
Sbjct: 59 EERKEREEQARKEQEEYEKLKSSFVVEEE 87
Score = 37.8 bits (88), Expect = 0.002
Identities = 20/73 (27%), Positives = 59/73 (80%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K KK K +EK+ +++ + ++E+++E+KK ++K++ ++K+++E ++++E+KK+E+++
Sbjct: 2 KIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEER 61
Query: 259 KKKKKEKKKKKDE 271
K+++++ +K+++E
Sbjct: 62 KEREEQARKEQEE 74
Score = 37.8 bits (88), Expect = 0.002
Identities = 21/79 (26%), Positives = 63/79 (79%), Gaps = 2/79 (2%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+K ++ K EEK + ++++++ +++E+++++K +EK++ ++K++E+ ++++EKKK++
Sbjct: 1 KKIGAKKRAKLEEK--QARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEE 58
Query: 250 EEKKKEKKKKKKKKEKKKK 268
EE+K+ +++ +K++E+ +K
Sbjct: 59 EERKEREEQARKEQEEYEK 77
Score = 37.4 bits (87), Expect = 0.003
Identities = 23/79 (29%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K ++++R+ +R+ ++K EE ++E E+KEE++ E+++EKKKE++++++++E+ +K++
Sbjct: 14 KQARRQQREAEEEEREERKKLEE-KREGERKEEEELEEEREKKKEEEERKEREEQARKEQ 72
Query: 234 KKKEKKKKKKEKKKKKEEK 252
++ EK K +++ +K
Sbjct: 73 EEYEKLKSSFVVEEEGTDK 91
Score = 37.0 bits (86), Expect = 0.004
Identities = 20/66 (30%), Positives = 55/66 (83%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KK+ K +EK+ + +++E +++++++++K ++K+E ++K+EE+ +E+++KKK++E++K++
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
Query: 270 DEGRRR 275
+E R+
Sbjct: 65 EEQARK 70
Score = 33.5 bits (77), Expect = 0.057
Identities = 18/61 (29%), Positives = 47/61 (77%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KK KK+ K +EK+ ++++++ ++++++E+KK +E+++ E+K++++ +E+++KK E
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 275 R 275
R
Sbjct: 61 R 61
Score = 30.8 bits (70), Expect = 0.50
Identities = 23/77 (29%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E ++ R+K + KR+ E +E EEE +EE++K+K++E++KE++++ +K++++ +K K
Sbjct: 25 EEEREERKKLEEKREGERKE-EEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFV 83
Query: 239 KKKKKEKKKKKEEKKKE 255
+++ K +E+ E
Sbjct: 84 VEEEGTDKLSADEESNE 100
Score = 27.7 bits (62), Expect = 5.1
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
E + KK K+ +++ + +EE EK++E++E K++E++ K++E+ +K K
Sbjct: 25 EEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSS 81
Score = 27.0 bits (60), Expect = 9.6
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK 213
+ G + ++E ++R +K++ + +KE EE+ +++EE +K K
Sbjct: 35 EEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSS 81
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 44.0 bits (104), Expect = 2e-05
Identities = 18/81 (22%), Positives = 48/81 (59%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ +E+E +K ++++ + +E K+E+K+ ++K+ K +KE ++ ++E +++ E
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDE 100
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
E E +K+ ++K + + E
Sbjct: 101 ESSDENEKETEEKTESNVEKE 121
Score = 43.6 bits (103), Expect = 3e-05
Identities = 18/79 (22%), Positives = 46/79 (58%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ +++ K+ ++E E E+ +E++KE + KE K +K++++ +++ ++E ++
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Query: 241 KKKEKKKKKEEKKKEKKKK 259
E +K+ EEK + +K
Sbjct: 102 SSDENEKETEEKTESNVEK 120
Score = 43.2 bits (102), Expect = 5e-05
Identities = 19/74 (25%), Positives = 43/74 (58%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+Q +K + E EE +EE+KE E K++K +K+ E+ +E+ +++ ++ + +
Sbjct: 48 EQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107
Query: 242 KKEKKKKKEEKKKE 255
K+ ++K + +KE
Sbjct: 108 KETEEKTESNVEKE 121
Score = 42.0 bits (99), Expect = 1e-04
Identities = 14/72 (19%), Positives = 42/72 (58%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
++ ++E KK +E + E+ KE++K+ ++K+ K +K+ +E +++ +++ +
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDE 100
Query: 261 KKKEKKKKKDEG 272
+ ++ +K+ E
Sbjct: 101 ESSDENEKETEE 112
Score = 41.6 bits (98), Expect = 1e-04
Identities = 15/76 (19%), Positives = 45/76 (59%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
++ +E++ +K +++ + +E K++EK+ + K+ K + +K+ +E +++ EE+
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEE 98
Query: 253 KKEKKKKKKKKEKKKK 268
+E + +K+ ++K
Sbjct: 99 DEESSDENEKETEEKT 114
Score = 41.3 bits (97), Expect = 2e-04
Identities = 14/80 (17%), Positives = 48/80 (60%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ ++E +K ++++ + +E K+E+K+ ++K+ + +K+ ++ +++ ++E +
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDE 100
Query: 247 KKKEEKKKEKKKKKKKKEKK 266
+ +E +KE ++K + +K
Sbjct: 101 ESSDENEKETEEKTESNVEK 120
Score = 40.5 bits (95), Expect = 4e-04
Identities = 14/74 (18%), Positives = 43/74 (58%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
++ ++++ KK + ++ + +E K+E+K+ + ++ K EK+ ++ E++ E++
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Query: 259 KKKKKEKKKKKDEG 272
++ E +K+ +E
Sbjct: 100 EESSDENEKETEEK 113
Score = 38.2 bits (89), Expect = 0.002
Identities = 15/81 (18%), Positives = 48/81 (59%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+++ KK ++++ E +E K++EK+ ++K+ K +++ ++ +++ E++ ++ + +
Sbjct: 48 EQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107
Query: 249 KEEKKKEKKKKKKKKEKKKKK 269
KE ++K + +K+ K
Sbjct: 108 KETEEKTESNVEKEITNPSWK 128
Score = 36.6 bits (85), Expect = 0.006
Identities = 19/81 (23%), Positives = 44/81 (54%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++E +K ++ + +EEEKE E+K+ + EK+ E+ ++E ++E ++ + +
Sbjct: 48 EQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107
Query: 237 EKKKKKKEKKKKKEEKKKEKK 257
++ ++K E +KE K
Sbjct: 108 KETEEKTESNVEKEITNPSWK 128
Score = 35.5 bits (82), Expect = 0.016
Identities = 14/62 (22%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE--KKKKKEEKKKEKKKKKKKKEKKKKK 269
+ ++E KK ++ + +E K+++KE + KE+K +K+ ++ +E+ +++
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEE 98
Query: 270 DE 271
DE
Sbjct: 99 DE 100
Score = 32.4 bits (74), Expect = 0.17
Identities = 16/76 (21%), Positives = 38/76 (50%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +E + K + K E+KE++ EK+ E+ +E+ +E+ ++ + +K+ ++
Sbjct: 53 KSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEE 112
Query: 234 KKKEKKKKKKEKKKKK 249
K + +K+ K
Sbjct: 113 KTESNVEKEITNPSWK 128
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 44.9 bits (106), Expect = 2e-05
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ K+K K+K KE K E + + + K++E+K KKKK K
Sbjct: 794 AARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYK 850
Score = 44.9 bits (106), Expect = 3e-05
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
K + K++ +EK KE K + E + E+ ++++EK KKKK K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYK 850
Score = 44.2 bits (104), Expect = 5e-05
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ R K+K K K + +E K E E + E+ K+++EK + KK+K
Sbjct: 792 KAAARAKQKPKEKGPND--KEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPY 849
Query: 241 K 241
K
Sbjct: 850 K 850
Score = 44.2 bits (104), Expect = 5e-05
Identities = 21/77 (27%), Positives = 32/77 (41%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EEEE E + E+ K K K + K+K KEK KE K + +
Sbjct: 761 EEEEFEYPRMYEEASGKSVRKVNTAVLSTTIKAAARAKQKPKEKGPNDKEIKIESPSVET 820
Query: 255 EKKKKKKKKEKKKKKDE 271
E ++ K+ ++K D
Sbjct: 821 EGERCTIKQREEKGIDA 837
Score = 40.3 bits (94), Expect = 0.001
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K + K+K K++ +K+ K + + + ++ K++EEK + K+KK K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKV 851
Query: 271 EGRRR 275
+ R
Sbjct: 852 DNMTR 856
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 42.7 bits (101), Expect = 3e-05
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK-KKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
E+K E + +E+ + K+ +E+KK +K KEK ++++ K + E E
Sbjct: 31 YEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNT 90
Query: 259 KKKKKEK 265
K K++
Sbjct: 91 VKATKKQ 97
Score = 41.6 bits (98), Expect = 8e-05
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E+K+ E + +E+ + K+ +E+KK +K K+K E+++ K + + +
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENN 89
Query: 255 EKKKKKKK 262
K KK+
Sbjct: 90 TVKATKKQ 97
Score = 38.5 bits (90), Expect = 9e-04
Identities = 16/79 (20%), Positives = 38/79 (48%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KK+ E + +EE + +K+ +E+KK +K K+K ++++ + + + + K
Sbjct: 33 KKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVK 92
Query: 253 KKEKKKKKKKKEKKKKKDE 271
+K+ + E+ E
Sbjct: 93 ATKKQLFSSEYEQTSSSSE 111
Score = 37.0 bits (86), Expect = 0.003
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKK--EKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+ + + +EE + +K+ +E+KK +K KEK ++++ K + E + K
Sbjct: 33 KKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVK 92
Query: 247 KKKEE 251
K++
Sbjct: 93 ATKKQ 97
Score = 35.0 bits (81), Expect = 0.014
Identities = 10/65 (15%), Positives = 32/65 (49%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+K + +EE + +++ +++KK +K ++K E+++ K + + + K
Sbjct: 33 KKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVK 92
Query: 248 KKEEK 252
+++
Sbjct: 93 ATKKQ 97
Score = 34.3 bits (79), Expect = 0.023
Identities = 16/86 (18%), Positives = 37/86 (43%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+K +E+ E KE E++K+ +K K++ ++E+ K + + + K
Sbjct: 33 KKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVK 92
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDE 271
KK+ E ++ E +++
Sbjct: 93 ATKKQLFSSEYEQTSSSSESTSEEET 118
Score = 31.2 bits (71), Expect = 0.30
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
EKK + ++E + K+ ++++K +K K+K ++++ K
Sbjct: 32 EKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQ 79
Score = 28.9 bits (65), Expect = 1.7
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 214 EKKKEKKKKEKKKEKKK--KKKKKKEKKKKKKEKKKKKEEKKKEKKKK---------KKK 262
EKK + + +E+ + K+ E++KK +K K++ +++E K +
Sbjct: 32 EKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTV 91
Query: 263 KEKKKK 268
K KK+
Sbjct: 92 KATKKQ 97
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 43.6 bits (103), Expect = 3e-05
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ EK K K + E K ++K +K K K + + KK ++KKE+KKK KK
Sbjct: 16 LESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKK 75
Query: 263 K 263
K
Sbjct: 76 K 76
Score = 43.6 bits (103), Expect = 3e-05
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K+ E EK + K + E + ++K EK K K + ++ KK ++K+E+
Sbjct: 10 KRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEE 69
Query: 253 KKEKKKKKKKKEKKKKKDEG 272
KK+ KKKK + +
Sbjct: 70 KKKPKKKKVPLQVNPAQLFV 89
Score = 41.7 bits (98), Expect = 1e-04
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E K + K K + + ++K EK K K + E+ KK +EKK++KKK K+
Sbjct: 16 LESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKK 75
Query: 238 KK 239
KK
Sbjct: 76 KK 77
Score = 39.8 bits (93), Expect = 6e-04
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
KR E E+ K + K + K + K +K K K + E+ KK ++KK+E
Sbjct: 10 KRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEE 69
Query: 251 EKKKEKKK 258
+KK +KKK
Sbjct: 70 KKKPKKKK 77
Score = 39.0 bits (91), Expect = 0.001
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R + + + K K E + ++K EK K K + + KK ++KK++K+K
Sbjct: 14 RALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKP 73
Query: 240 KKKK 243
KKKK
Sbjct: 74 KKKK 77
Score = 35.2 bits (81), Expect = 0.020
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 185 RRKRKRKRKKEEEEKEEEKK---EEKKKEKKKEKKKEKKKKEKK---KEKKKKKKKKKEK 238
R KR + + E+ K + K E K ++K EK K K E+ KK +++K
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKK 67
Query: 239 KKKKKEKKKK 248
++KKK KKKK
Sbjct: 68 EEKKKPKKKK 77
Score = 31.3 bits (71), Expect = 0.40
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
YK K + + K + K E+ K K + ++ KK +++K++K+K K+KK
Sbjct: 21 YKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 30.9 bits (70), Expect = 0.55
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K+++ + K+ + + EK K K+K + K + K +K K K
Sbjct: 2 KRQDFFRAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKA 52
Score = 28.6 bits (64), Expect = 2.8
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK---------- 260
K+++ + K+ + +K K K K + + + + +K K K
Sbjct: 2 KRQDFFRAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKL 61
Query: 261 ----KKKEKKKKKDEG 272
KK+EKKK K +
Sbjct: 62 HSQEKKEEKKKPKKKK 77
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 44.5 bits (106), Expect = 3e-05
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 181 RKQRRRKRKRKRKKEEEEKE-EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+K + KR EE +KE E K+E E K+E K + + E++ ++++ + ++ E++
Sbjct: 25 KKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERR 84
Query: 240 --------KKKKEKKKKKEEK--KKEKKKKKKKKEKKKKKDE 271
+K E KKEE KKEK+ K+K +K++E
Sbjct: 85 LLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEE 126
Score = 42.2 bits (100), Expect = 2e-04
Identities = 22/94 (23%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ +K+ + K + K E E E KE + + ++ E++ ++E+ ++K + KKE
Sbjct: 46 ETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERR--LLQREETLDRKMESLDKKE 103
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +KKEK+ +EK ++K+++ ++ ++++E
Sbjct: 104 ENLEKKEKELSNKEKNLDEKEEELEELIAEQREE 137
Score = 41.8 bits (99), Expect = 2e-04
Identities = 24/92 (26%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK-KKKEKKKEKKKKKKKK 235
KKE + + + + R + E E +E + E ++ E++ +++E +K + +KK++ +K
Sbjct: 49 KKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEK 108
Query: 236 KEKKKKKKEK--KKKKEEKKKEKKKKKKKKEK 265
KEK+ KEK +K+EE ++ +++++ E+
Sbjct: 109 KEKELSNKEKNLDEKEEELEELIAEQREELER 140
Score = 39.5 bits (93), Expect = 0.001
Identities = 19/78 (24%), Positives = 43/78 (55%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K EK+ EE K +E KKE + +K+ + K++ K + + ++E K+++ E +
Sbjct: 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQ 79
Query: 254 KEKKKKKKKKEKKKKKDE 271
+ +++ +++E +K E
Sbjct: 80 RLERRLLQREETLDRKME 97
Score = 36.4 bits (85), Expect = 0.012
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK---KKKEKKKEKKKKKKKKKEKKK- 240
R++ K+ EE + EE KKE + KKE K+E K + + +++ KE++
Sbjct: 19 RKRIAEKKLGSAEELAKRIIEEAKKEAE-TLKKEALLEAKEEVHKLRAELERELKERRNE 77
Query: 241 -KKKEKK-KKKEEKKKEKKKKKKKKEKKKKKDEGR 273
++ E++ ++EE K + KKE+ +K E
Sbjct: 78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEKE 112
Score = 34.1 bits (79), Expect = 0.062
Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 29/115 (25%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KERR + +R +R ++EE + + +KK+E ++K+KE KEK ++K+++ ++
Sbjct: 72 KERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELI 131
Query: 238 KKKKKKEKK-----------------------------KKKEEKKKEKKKKKKKK 263
+++++ ++ K+ EE+ KE+ KK K+
Sbjct: 132 AEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKE 186
Score = 28.4 bits (64), Expect = 5.4
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK------EKKKKEKKKEKKK 230
KKE +++ K ++K +EKEEE EE E+++E ++ E+ K+ +E ++
Sbjct: 101 KKEENLEKKEKELSNKEKNLDEKEEEL-EELIAEQREELERISGLTQEEAKEILLEEVEE 159
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+ + + K K+ E++ K+E KK K+
Sbjct: 160 EARHEAAKLIKEIEEEAKEEADKKAKE 186
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 44.7 bits (106), Expect = 3e-05
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK----------KK 226
KKE + + + K++ ++E E++EE K E+ + K +K +K++E+ K
Sbjct: 440 KKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKT 499
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K KK+ KKK K K K K K KK+KKK+K
Sbjct: 500 TSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSI 544
Score = 44.7 bits (106), Expect = 4e-05
Identities = 27/91 (29%), Positives = 50/91 (54%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
R+K+ + ++E E +EE +EE ++ KK + K E +++ + KK KKE
Sbjct: 384 ARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKEN 443
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K + KEKK+ EE++ E +++ K ++ K
Sbjct: 444 KNEFKEKKESDEEEELEDEEEAKVEKVANKL 474
Score = 42.4 bits (100), Expect = 2e-04
Identities = 23/95 (24%), Positives = 52/95 (54%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
E + RR + EEE +E KK +++ E +++ + +K K++ K + K+K
Sbjct: 391 DAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEK 450
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ +++E + ++E K ++ K K+ +K +K+E
Sbjct: 451 KESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEE 485
Score = 38.9 bits (91), Expect = 0.002
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ ++ RRK + ++E E ++ KKE K + K+K++ E+++ E ++E K +K K
Sbjct: 414 EPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANK 473
Query: 237 EKKKKKKEKKKKKEE---------KKKEKKKKKKKKEKKKKKDEG 272
K+ +K +K+++EE K K KK+ KKK
Sbjct: 474 LLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSS 518
Score = 38.9 bits (91), Expect = 0.002
Identities = 25/95 (26%), Positives = 42/95 (44%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ +R K +++ ++EE ++E + K KK++ KKK K K K K
Sbjct: 470 VANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISK 529
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K KK+KKK+K + ++ K DE
Sbjct: 530 AAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDDE 564
Score = 38.9 bits (91), Expect = 0.002
Identities = 22/83 (26%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 194 KEEEEKEEEKKEEKKK----EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+EE E+ +K ++K +KE + +K KKE K E K+KK+ +E++ + +E+ K +
Sbjct: 409 EEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVE 468
Query: 250 EEKKKEKKKKKKKKEKKKKKDEG 272
+ K K+ +K ++++++++
Sbjct: 469 KVANKLLKRSEKAQKEEEEEELD 491
Score = 38.1 bits (89), Expect = 0.004
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 11/101 (10%)
Query: 183 QRRRKRKRKRKKEE-----EEKEEEKKEEKKKEKKKEKKKEKKKK------EKKKEKKKK 231
QR RK++ E E E E++ ++++ ++ KK ++K EK+ E KK
Sbjct: 380 QRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKL 439
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
KK+ K + K+KKE +++E + +E+ K +K K K+ E
Sbjct: 440 KKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEK 480
Score = 38.1 bits (89), Expect = 0.004
Identities = 25/95 (26%), Positives = 46/95 (48%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+E K + K ++ E+ +KEEE++E ++ + K KK++ KKK K
Sbjct: 461 DEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKL 520
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K K K K +KKK+K+K + +++
Sbjct: 521 DKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEED 555
Score = 37.7 bits (88), Expect = 0.005
Identities = 23/99 (23%), Positives = 51/99 (51%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+ E+ + ++ +K + + +E+KE +++EE + E++ + +K K K+ EK +K+
Sbjct: 425 FGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKE 484
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++++E ++ K K KK+ KKK K
Sbjct: 485 EEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKA 523
Score = 35.8 bits (83), Expect = 0.025
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE---------KK 225
++E + ++ R++ E ++E + ++ KKE K E K++K+ E K
Sbjct: 407 SDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAK 466
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
EK K K+ +K +K+E++++ +E+ K + KK+D
Sbjct: 467 VEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDS 512
Score = 29.3 bits (66), Expect = 2.4
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKK--EKKKEKKKEKKKKEK--------------KK 226
++K + KE E+ EE K ++ + +KKE+ E ++
Sbjct: 351 PWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEE 410
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
E ++ KK ++K E +K+ E KK KK+ K + ++KK+ DE
Sbjct: 411 ENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEE 457
Score = 28.5 bits (64), Expect = 4.8
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K K+++ K++ + K K K K KK+KKKEK ++ +
Sbjct: 501 SSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLD 560
Query: 247 KKKEEKKKE 255
EE + +
Sbjct: 561 VDDEEDEDD 569
Score = 27.7 bits (62), Expect = 8.7
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 19/76 (25%)
Query: 196 EEEKEEEKKEEKKKE----------------KKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
E+EK+E +EE KE KK++KK+++K++ K + KK+K+K+KK
Sbjct: 596 EKEKKEVIEEEDPKEIDLTLPGWGSWAGDGIKKRKKKRKRKRRFLTKIEGVKKEKRKDKK 655
Query: 240 KKK---KEKKKKKEEK 252
K EK+ KK K
Sbjct: 656 LKNVIINEKRNKKAAK 671
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 44.3 bits (105), Expect = 4e-05
Identities = 25/73 (34%), Positives = 49/73 (67%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ +RK + ++ K KR+KE E + +E+K+ KKK + + KE K+ +KEK + +KK++
Sbjct: 273 VRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQ 332
Query: 237 EKKKKKKEKKKKK 249
K++ +K+K K++
Sbjct: 333 RKERGEKKKLKRR 345
Score = 42.8 bits (101), Expect = 1e-04
Identities = 25/78 (32%), Positives = 50/78 (64%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + +RK K +R KE+ KE E++ +++K+ KK+ + + KE KE +K+K +
Sbjct: 268 PINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARA 327
Query: 237 EKKKKKKEKKKKKEEKKK 254
KK+++KE+ +KK+ K++
Sbjct: 328 RKKEQRKERGEKKKLKRR 345
Score = 38.1 bits (89), Expect = 0.003
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK---- 249
EEE ++E E + + + K + K K K ++ K+K++KE +++ KE+K+ K
Sbjct: 248 DGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLA 307
Query: 250 --------------EEKKKEKKKKKKKKEKKKKKDEGRR 274
+EK + +KK+++K+ +KKK + R+
Sbjct: 308 QLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRK 346
Score = 37.0 bits (86), Expect = 0.008
Identities = 20/62 (32%), Positives = 42/62 (67%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K++RRK+ R+ K +++ +++ + + +E KE +++K +KKE++KE+ +KKK K+
Sbjct: 285 KEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKR 344
Query: 237 EK 238
K
Sbjct: 345 RK 346
Score = 30.1 bits (68), Expect = 1.4
Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 28/115 (24%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKK----------------------------KE 218
+ ++ ++E + E++++E ++ E+KK +K E
Sbjct: 197 ELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDE 256
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ + E + K + K+K K ++ K+K K+ E++ K++K+ KKK R
Sbjct: 257 SAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLAR 311
Score = 28.1 bits (63), Expect = 4.8
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
G + K++RRK+ +K K +E E K KK+ KK+ KKK+ K+ +K+
Sbjct: 47 TTGDEATIKKKRRKKLKKPLKSDEILENRSKVPAPSVKKRHVKKKSKKKKSKQVSRKELL 106
Query: 234 KKKEKKKKKKEKKKKKEEKKKE 255
+ K+ + KK K K K+
Sbjct: 107 RLKKLARGKKGGKAKLLNASKD 128
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 43.5 bits (103), Expect = 4e-05
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+EE E + + EE++ +KKK+KKK+K KK + + + E K
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAK 225
Query: 254 KEKKKKKKKKEKKKKK 269
K KKK+ + +K +
Sbjct: 226 KLKKKRSIAPDNEKSE 241
Score = 40.0 bits (94), Expect = 5e-04
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EEE + + + E+++ KKK+KKK+KK K K + + + +
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTK-KNNATGSSAEATVSSAVPTELSSGAGQVGEA 224
Query: 255 EKKKKKKKKEKKKKKDE 271
+K KKK+ +K E
Sbjct: 225 KKLKKKRSIAPDNEKSE 241
Score = 40.0 bits (94), Expect = 6e-04
Identities = 19/83 (22%), Positives = 35/83 (42%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ R +EE K+++KK++KK +K + + + + KK KKK+
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKR 231
Query: 249 KEEKKKEKKKKKKKKEKKKKKDE 271
EK + K KK++
Sbjct: 232 SIAPDNEKSEVYKSLFTSHKKEK 254
Score = 35.8 bits (83), Expect = 0.016
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
E K + ++E+ K+KKKKKKKK +K + + + + K
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLK 228
Query: 273 RRR 275
++R
Sbjct: 229 KKR 231
Score = 34.6 bits (80), Expect = 0.039
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K R ++ R K+K+K+K KK+ KK + E +
Sbjct: 172 LKARLEEERAKKKKKKK---------KKKTKKNNATGSSAEATVSSAVPTELSSGAGQVG 222
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
E KK KK++ + +K E K KK+K
Sbjct: 223 EAKKLKKKRSIAPDNEKSEVYKSLFTSHKKEK 254
Score = 31.5 bits (72), Expect = 0.31
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
++E + + + E+++ KKKKK+KKKK K+ + + G
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVG 222
Score = 29.2 bits (66), Expect = 1.8
Identities = 14/76 (18%), Positives = 30/76 (39%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+ KK+++K+++ K+ E + + + KK K+K+ +
Sbjct: 179 ERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDNE 238
Query: 233 KKKKEKKKKKKEKKKK 248
K + K KK+K
Sbjct: 239 KSEVYKSLFTSHKKEK 254
Score = 27.3 bits (61), Expect = 9.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+E+ + K + +++ KKK+KKKKKK K+
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAE 203
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 44.1 bits (105), Expect = 5e-05
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K + E ++ K+E +K E +KE++ EK KE + KK + +KK++ K K+ + K
Sbjct: 160 KIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGK 219
Query: 254 KEKKKK 259
K K++
Sbjct: 220 KIDKEE 225
Score = 43.7 bits (104), Expect = 8e-05
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 176 GKKERRKQRRRKRKRKRKK------EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
+ ER +++ + K+ + + E + K++ +K E +KE++ ++ KE
Sbjct: 132 NEIERDHLKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEAL 191
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ KK + +KKK+ + KE + KK K++
Sbjct: 192 EAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 41.4 bits (98), Expect = 4e-04
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ +K+ + ++ EK + E K++ +K + +K+E+ +K K+ + K
Sbjct: 136 RDHLKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMK 195
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K E +KKK+ K + K+ + KK K+E
Sbjct: 196 KLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 40.6 bits (96), Expect = 7e-04
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
++ ++E EK E +K+E+ ++ KE + KK E +KKK+ K K+ + KK +K+
Sbjct: 165 IDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKE 224
Query: 254 KEKKKKKKKKEKKKKKDEG 272
+ K+ +E+++ EG
Sbjct: 225 EITPMKEINEEERRVVVEG 243
Score = 38.3 bits (90), Expect = 0.004
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+KEEE+++ K+ + +K + +KK++ K KE + KK +K++ K+ +EE+
Sbjct: 178 QKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMKEINEEER 237
Query: 253 ---------KKEKKKKKKKK 263
K E K+ K +
Sbjct: 238 RVVVEGYVFKVEIKELKSGR 257
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 42.4 bits (100), Expect = 5e-05
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
R+R+ K+E E +EE + + + +KE +++ +K+K K++K K
Sbjct: 67 RERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDP 126
Query: 248 KKEEKKKEKK 257
+ + K
Sbjct: 127 RGGTQDVVDK 136
Score = 38.2 bits (89), Expect = 0.002
Identities = 12/71 (16%), Positives = 30/71 (42%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
R R+ K + + EEE + + + + +++ +++ +K+K + K+ K K
Sbjct: 66 LRERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKD 125
Query: 243 KEKKKKKEEKK 253
+ K
Sbjct: 126 PRGGTQDVVDK 136
Score = 37.0 bits (86), Expect = 0.004
Identities = 15/81 (18%), Positives = 35/81 (43%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
R++E +E+ E ++E + + +KE +++ +K K + KE+K K+
Sbjct: 67 RERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDP 126
Query: 252 KKKEKKKKKKKKEKKKKKDEG 272
+ + K + +E
Sbjct: 127 RGGTQDVVDKSQASLDYGEEE 147
Score = 32.0 bits (73), Expect = 0.17
Identities = 10/64 (15%), Positives = 28/64 (43%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++E K+E + +E+ + + K+ +++ +++K + K+ K K
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPR 127
Query: 272 GRRR 275
G +
Sbjct: 128 GGTQ 131
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 41.9 bits (99), Expect = 6e-05
Identities = 19/62 (30%), Positives = 41/62 (66%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
RK+ R+ +K++EEE+EEE + E+ E+++ + +K+ K K +K+++ ++K+K+
Sbjct: 87 RKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Query: 241 KK 242
K
Sbjct: 147 LK 148
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/68 (22%), Positives = 46/68 (67%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+K+ +K +KK+KE+++E++ + ++ E+++ + +K+ + K+EK+++ ++K+K+
Sbjct: 87 RKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Query: 268 KKDEGRRR 275
K++ +
Sbjct: 147 LKEQMKML 154
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 43.1 bits (102), Expect = 6e-05
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ E+ E E +E++ EK+ ++++ KKK++ K K K+ KK+KKK K K +
Sbjct: 60 DSEDDEPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPR 119
Query: 255 EKKKKKKKKEKKKKKDEGRRR 275
KKK ++ D RR+
Sbjct: 120 PKKKSERISWAPTLLDSPRRK 140
Score = 38.5 bits (90), Expect = 0.002
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+EEE E+E + E++ +KKK + K K KE K+KKKK + K + KKK E+
Sbjct: 69 DDEEEGEKELQREERLKKKK-RVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERI 127
Query: 254 KEKKKKKKKKEKKKKKD 270
+K +
Sbjct: 128 SWAPTLLDSPRRKSSRS 144
Score = 38.5 bits (90), Expect = 0.002
Identities = 24/106 (22%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G+KE +++ R K+K++ K + ++ +KK++K K K + +KK E+
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTL 133
Query: 236 KEKKKKK------KEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ ++K + K+ E+ KE++ ++KK + K +K + +++
Sbjct: 134 LDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKK 179
Score = 35.4 bits (82), Expect = 0.019
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 177 KKERRKQ--RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
KK+R K + K+K+KK+ + K + +KK E+ +K +
Sbjct: 86 KKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSS 145
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ K+ E+ K++E ++K+ + K +K+++KKK+
Sbjct: 146 TVQNKEATHERLKEREIRRKKIQAKARKRKEKKKE 180
Score = 29.3 bits (66), Expect = 1.8
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 25/118 (21%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
K + K+K ++ +K + + ++ E+ KE++ ++KK + K
Sbjct: 112 SPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKA 171
Query: 240 KKKKEKKKKK-------------------------EEKKKEKKKKKKKKEKKKKKDEG 272
+K+KEKKK+K EE+++EKKK K + KK++ EG
Sbjct: 172 RKRKEKKKEKELTQEERLAEAKETERINLKSLERYEEQEEEKKKAKIQALKKRRLYEG 229
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 41.7 bits (98), Expect = 9e-05
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
++ K K K+ + ++ EE + + K EKK +KKK E KE+KKKKK+KK+KKK+
Sbjct: 111 KKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 41.0 bits (96), Expect = 2e-04
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ K+K K K KK + ++ ++ + K EKK KK++ + +K++KKKKKEKKK
Sbjct: 105 HIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKK 164
Query: 268 KK 269
KK
Sbjct: 165 KK 166
Score = 39.8 bits (93), Expect = 4e-04
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+K K K ++ ++ EE + + K EKK K+KK E K++KKKK++KKKKK++
Sbjct: 110 KKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Query: 247 KKKEE 251
+
Sbjct: 170 SPEHP 174
Score = 39.0 bits (91), Expect = 8e-04
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ +++ K + KK + ++ E+ + + K +KK KK+K + KE+KKKK+EKKK+K
Sbjct: 107 QPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKK 166
Query: 257 KKKKKKKE 264
K+ +
Sbjct: 167 KRHSPEHP 174
Score = 36.3 bits (84), Expect = 0.006
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ K+K K K K+ + ++ E+ + + +KK +KKK +++K+++KKKK+KKK
Sbjct: 105 HIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKK 164
Query: 264 EKKKKKDE 271
+KK+ E
Sbjct: 165 KKKRHSPE 172
Score = 34.8 bits (80), Expect = 0.023
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K++ K + +K + + EE + + + ++K K+KK E K+ KKK+K+KKKKKK+
Sbjct: 110 KKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 34.4 bits (79), Expect = 0.026
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K + K+ R + + + + + E+K K+KK E KE+KKK+K+K+KKKK+ +
Sbjct: 114 KHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEH 173
Query: 238 K 238
Sbjct: 174 P 174
Score = 33.6 bits (77), Expect = 0.057
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ KKK K K KK + + ++ + K EKK +KKK + KE+KKKK E ++
Sbjct: 105 HIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKK 164
Query: 275 R 275
+
Sbjct: 165 K 165
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 42.2 bits (99), Expect = 9e-05
Identities = 23/64 (35%), Positives = 43/64 (67%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+++ E+ K K+KEKK+ ++ EK+ E+ + +K EK ++KEKKK+ EE K+E ++
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
Query: 261 KKKE 264
++ E
Sbjct: 201 EELE 204
Score = 39.5 bits (92), Expect = 7e-04
Identities = 19/64 (29%), Positives = 43/64 (67%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
++ E+ + K+KEKK+ ++ +K+ E+ +++K +K E+K+KKKE ++ KEE ++
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
Query: 257 KKKK 260
++ +
Sbjct: 201 EELE 204
Score = 37.9 bits (88), Expect = 0.003
Identities = 17/61 (27%), Positives = 42/61 (68%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ EE + + ++K+E+ +E +KE ++ + +K+ ++ ++K+KKKE ++ K+E ++ EE
Sbjct: 144 RLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEEL 203
Query: 253 K 253
+
Sbjct: 204 E 204
Score = 36.0 bits (83), Expect = 0.011
Identities = 16/61 (26%), Positives = 40/61 (65%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ + ++++K+E +E EK+ E+ +++K +K ++KEKKKE ++ K++ +E ++
Sbjct: 144 RLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEEL 203
Query: 243 K 243
+
Sbjct: 204 E 204
Score = 32.9 bits (75), Expect = 0.12
Identities = 16/58 (27%), Positives = 39/58 (67%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
+ + +++ +++R + +KE EE E+EK +K ++KEKKKE ++ +++ E+ ++ +
Sbjct: 147 ELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 43.1 bits (102), Expect = 1e-04
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K K + EE E+E + + E E K K++++ E+ ++K+ +K + + +
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLE 284
Query: 247 KKKEEKKKEK 256
KE+K +E
Sbjct: 285 ILKEKKDEEL 294
Score = 42.7 bits (101), Expect = 1e-04
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K K E EE+EEE E E E K K+++E E+ ++++ K E K
Sbjct: 225 KLKETSETEEREEETDVE--IETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDK 282
Query: 249 KEEKKKEKKKKKKKKEK 265
E K++K ++ EK
Sbjct: 283 LEILKEKKDEELFWFEK 299
Score = 42.7 bits (101), Expect = 2e-04
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
KK +E E E++EE E E + + K K+E++ ++ ++KE K E+
Sbjct: 223 TKKLKETSETEEREE---ETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTED 279
Query: 252 KKKEKKKKKKKKEKK 266
K + K+KK E+
Sbjct: 280 LDKLEILKEKKDEEL 294
Score = 40.4 bits (95), Expect = 7e-04
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
K+ + + + ++EE + E E E K K++++ ++ E+K+ K ++ K
Sbjct: 223 TKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDK 282
Query: 241 KKKEKKKKKEEK 252
+ K+KK EE
Sbjct: 283 LEILKEKKDEEL 294
Score = 37.7 bits (88), Expect = 0.006
Identities = 12/71 (16%), Positives = 33/71 (46%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+ ++ + + + E E E K K++++ ++ E+K++ K + K
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKL 283
Query: 238 KKKKKKEKKKK 248
+ K+K+ ++
Sbjct: 284 EILKEKKDEEL 294
Score = 37.3 bits (87), Expect = 0.007
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK + +R+ + E E E K ++++E E+ +EK+ K + K
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKL 283
Query: 237 EKKKKKKEKKKKKEEK 252
E K+KK+++ EK
Sbjct: 284 EILKEKKDEELFWFEK 299
Score = 37.3 bits (87), Expect = 0.008
Identities = 12/60 (20%), Positives = 28/60 (46%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
++E + + K K+E+E E+ E+K++ K + + + K+KK ++
Sbjct: 235 REEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEEL 294
Score = 35.4 bits (82), Expect = 0.029
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK--EK 265
K+ + E+++E+ E + + K K++++ +++ EEK+ K + K
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286
Query: 266 KKKKDE 271
K+KKDE
Sbjct: 287 KEKKDE 292
Score = 35.4 bits (82), Expect = 0.032
Identities = 11/67 (16%), Positives = 35/67 (52%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KE + E+++E+ + + + + K++++ ++ ++K++ K E K +
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286
Query: 264 EKKKKKD 270
++KK ++
Sbjct: 287 KEKKDEE 293
Score = 34.6 bits (80), Expect = 0.051
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K + ++R + + + E K ++++E E+ E+K+ K E K +
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLE 284
Query: 234 KKKEKKKKKK 243
KEKK ++
Sbjct: 285 ILKEKKDEEL 294
Score = 33.1 bits (76), Expect = 0.19
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K K+ + +KKK+ K E+K KKEEKK++ K+++K+
Sbjct: 638 KIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 31.9 bits (73), Expect = 0.41
Identities = 10/58 (17%), Positives = 28/58 (48%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K KE + E+++E+ + + + K K++++ E+ ++K+ K + +
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDK 282
Score = 31.1 bits (71), Expect = 0.77
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
E K ++ R KK+E + + +E+ KKE+KKEK K ++K+
Sbjct: 635 ELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 30.7 bits (70), Expect = 0.96
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
K ++ R K+K K + EE+ K+E+KKEK K ++KE
Sbjct: 638 KIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 30.4 bits (69), Expect = 1.3
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E K K+ + +KKKE K ++K KK++KK+K K+++K+
Sbjct: 635 ELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 29.2 bits (66), Expect = 2.7
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K K+ + +K+K+ K + +EK KK++KKEK K++++ R
Sbjct: 638 KIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKER 679
Score = 29.2 bits (66), Expect = 2.9
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
E K K+ + +KKKE K ++K KKE+KK+K ++++K+
Sbjct: 633 ISELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 28.8 bits (65), Expect = 3.5
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
E+KKE K + +EK K+++KKEK K ++K+
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 28.0 bits (63), Expect = 6.2
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
K K+ + E+K+E K + +EK K++ EKK+K K++EK+
Sbjct: 633 ISELMKIKQIFRNWIEKKKEFKILDYTEEKTKKE--EKKEKNKREEKE 678
Score = 28.0 bits (63), Expect = 6.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K K+ + ++KK+ K E+K KK++K++K K++E R
Sbjct: 638 KIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKER 679
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 42.9 bits (102), Expect = 1e-04
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
EK ++ + K KK K +K K++ ++ K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 42.5 bits (101), Expect = 2e-04
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+K EK + K KK K +K K++ +K+ K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 42.1 bits (100), Expect = 2e-04
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E+ E EK +K + K +K K +K K++ EK K
Sbjct: 803 RAPTVEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 42.1 bits (100), Expect = 2e-04
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K EK + K KK + +K +++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 41.7 bits (99), Expect = 3e-04
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
EK +K + + K KK + ++ K++ EK K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 41.7 bits (99), Expect = 3e-04
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+K EK + K K+ K K K++ +K K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 39.8 bits (94), Expect = 0.001
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+K ++ + K KK K +K K++ +K K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 39.4 bits (93), Expect = 0.002
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K +K + K KK K K K++ +K K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 39.0 bits (92), Expect = 0.002
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
EK E+ + K KK K +K K++ +K K
Sbjct: 815 AEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 39.0 bits (92), Expect = 0.002
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
EE E E+ +K + K KK K +K K++ +K+ K
Sbjct: 808 EEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 37.1 bits (87), Expect = 0.008
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
E+ E EK ++ + K KK K +K +++ EK +
Sbjct: 803 RAPTVEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 34.4 bits (80), Expect = 0.062
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
E+ E+ + K KK K +K +++ +K K
Sbjct: 815 AEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 34.4 bits (80), Expect = 0.070
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K EK + + K KK K +K +++ E
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASE 853
Score = 34.0 bits (79), Expect = 0.080
Identities = 10/60 (16%), Positives = 22/60 (36%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K ++ EE E ++ +K + + KK K ++ K++ +K
Sbjct: 797 PKGRETRAPTVEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDG 856
Score = 30.1 bits (69), Expect = 1.2
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
K ++ + + + KK K +K +++ +K+ K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 28.6 bits (65), Expect = 4.2
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+ ++ R + KK K +K +++ +K+ K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 40.3 bits (95), Expect = 1e-04
Identities = 22/76 (28%), Positives = 44/76 (57%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E EE++ +E K KEK K +KK+E+KK + +K K ++K + E +K ++E ++
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 255 EKKKKKKKKEKKKKKD 270
+ + +++ K + K
Sbjct: 61 LEAELARRELKAEAKK 76
Score = 37.2 bits (87), Expect = 0.002
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ E++K ++ K KEK K +KK++EKK + ++ K E+K E + +K +KE ++
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 268 KKDEGRRR 275
+ E RR
Sbjct: 61 LEAELARR 68
Score = 36.5 bits (85), Expect = 0.003
Identities = 19/77 (24%), Positives = 42/77 (54%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+ K + KE+ K E+K++EKK E +K K ++K + + +K +KE ++ + E
Sbjct: 6 KTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAEL 65
Query: 246 KKKKEEKKKEKKKKKKK 262
+++ + + +K +K
Sbjct: 66 ARRELKAEAKKMLSEKG 82
Score = 36.5 bits (85), Expect = 0.003
Identities = 19/80 (23%), Positives = 48/80 (60%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
++E+ ++E + KEK K +KK+++KK + ++ K ++K + + +K +K+ +E +
Sbjct: 3 EEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELE 62
Query: 253 KKEKKKKKKKKEKKKKKDEG 272
+ +++ K + KK ++G
Sbjct: 63 AELARRELKAEAKKMLSEKG 82
Score = 36.1 bits (84), Expect = 0.004
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+ EE+K KE K KEK K EKK+E+KK + +K K +++ + + E+ +KE ++
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 259 KKKKKEKKKKKDE 271
+ + +++ K E
Sbjct: 61 LEAELARRELKAE 73
Score = 35.3 bits (82), Expect = 0.007
Identities = 18/78 (23%), Positives = 44/78 (56%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
++ +E +K K++ K ++K++EKK E +K K ++K + + ++ +K+ +E + +
Sbjct: 5 EKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAE 64
Query: 249 KEEKKKEKKKKKKKKEKK 266
++ + + KK EK
Sbjct: 65 LARRELKAEAKKMLSEKG 82
Score = 35.3 bits (82), Expect = 0.008
Identities = 19/80 (23%), Positives = 44/80 (55%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ K K+ + +++ K E+++EE+K E +K K ++K + + EK +++ ++ +
Sbjct: 3 EEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELE 62
Query: 234 KKKEKKKKKKEKKKKKEEKK 253
+ +++ K E KK EK
Sbjct: 63 AELARRELKAEAKKMLSEKG 82
Score = 34.5 bits (80), Expect = 0.016
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+ +E+K KE K K++ K +KK++++K + +K K EEK + + +K +K+ ++
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 267 KKKDEGRR 274
+ + RR
Sbjct: 61 LEAELARR 68
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 42.1 bits (100), Expect = 2e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK-KEEKKKEKKKKKKKKEKKK 267
++KK +K E + ++ K+ K++ K KKE K K +KKKEK++ K K K K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 268 KK 269
+
Sbjct: 90 PR 91
Score = 42.1 bits (100), Expect = 2e-04
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 186 RKRKRKRKKEEE-----EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+RK+ +K E E E+ +E KEE K +K+ + K +KK++K++ K K K K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 241 KK 242
+
Sbjct: 90 PR 91
Score = 37.9 bits (89), Expect = 0.004
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+++K +K + + ++ K+ K++ K KKE K K +KKK+K++ K +
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 36.3 bits (85), Expect = 0.010
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+++K ++ E E E+ KE K+E K K++ K K +KKK++++ K + K K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 249 K 249
Sbjct: 90 P 90
Score = 33.7 bits (78), Expect = 0.082
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKK-KEKKKEKKKEKKKK 222
E+ K+ + + K ++E K K ++KK K++ K K + K +
Sbjct: 47 EQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 29.0 bits (66), Expect = 2.9
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK 216
KE K +K + + +K++EK+E K + K + +
Sbjct: 53 KEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 27.5 bits (62), Expect = 7.1
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKK 204
KKE + + ++K+++++ + K + K
Sbjct: 62 DKKELKAWHKAQKKKEKQEAKAAKAKSKP 90
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 40.4 bits (95), Expect = 2e-04
Identities = 23/74 (31%), Positives = 50/74 (67%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ EE++EE+++E+++KE+K+EK+KE K +KE+++K+ ++ EK K K + +
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADD 69
Query: 251 EKKKEKKKKKKKKE 264
E E+ K++++ +
Sbjct: 70 EDYDEELKEQERWD 83
Score = 36.5 bits (85), Expect = 0.004
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
G +E+R+++ R+++ K +KEE+EKE K +K+E++K ++ +K K K +
Sbjct: 9 GRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYAD 68
Query: 232 KKKKKEKKKKKKEK--------KKKKEEKKKEKKKK 259
+ E+ K+++ +KKKE+ K+ K
Sbjct: 69 DEDYDEELKEQERWDDPMAQFLRKKKEKTDKKGKPL 104
Score = 35.0 bits (81), Expect = 0.015
Identities = 19/63 (30%), Positives = 42/63 (66%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
++K E+K+E+K+++K++KE+K++K+++ K +K+E++K+ ++ EK K K
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLA 64
Query: 273 RRR 275
R
Sbjct: 65 RYA 67
Score = 34.6 bits (80), Expect = 0.016
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 12/100 (12%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R K R ++++E+E ++EEK E+K+EK+KE K +KE+++++ ++ +K K K
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEK--ERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKP 62
Query: 240 KKKKEKKKKKEEKKKEKK----------KKKKKKEKKKKK 269
+ + +E+ KE++ +KKK+K KK K
Sbjct: 63 LARYADDEDYDEELKEQERWDDPMAQFLRKKKEKTDKKGK 102
Score = 31.1 bits (71), Expect = 0.24
Identities = 17/64 (26%), Positives = 44/64 (68%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K + + ++++++KE++KE+K++K++K+++ K +K+++E++ +E +K K K +
Sbjct: 7 KSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARY 66
Query: 268 KKDE 271
DE
Sbjct: 67 ADDE 70
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 42.3 bits (100), Expect = 2e-04
Identities = 12/77 (15%), Positives = 24/77 (31%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ K E K +K+KK+++ K + + K K +K K + +
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLT 804
Query: 247 KKKEEKKKEKKKKKKKK 263
+ K
Sbjct: 805 AADPDAVAAKVDGVSAD 821
Score = 42.3 bits (100), Expect = 2e-04
Identities = 12/58 (20%), Positives = 19/58 (32%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+KKE+E K E + + K EK K+ + K +
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
Score = 41.9 bits (99), Expect = 3e-04
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 189 KRKRKKEEEEK-------EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ K +E +K++K+KE K E + K K EK K +
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLT 804
Query: 242 KKEKKKKKEEKKKEKKKK 259
+ + +
Sbjct: 805 AADPDAVAAKVDGVSADR 822
Score = 40.0 bits (94), Expect = 0.001
Identities = 11/74 (14%), Positives = 23/74 (31%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ ++ K +K+KK+KE K E + K + +K K+ +
Sbjct: 747 KGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAA 806
Query: 257 KKKKKKKEKKKKKD 270
+
Sbjct: 807 DPDAVAAKVDGVSA 820
Score = 40.0 bits (94), Expect = 0.001
Identities = 12/78 (15%), Positives = 25/78 (32%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ K ++ K +K+KK+++ K E + K K ++ K E
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLT 804
Query: 251 EKKKEKKKKKKKKEKKKK 268
+ K +
Sbjct: 805 AADPDAVAAKVDGVSADR 822
Score = 29.2 bits (66), Expect = 3.0
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ + ++ K EK+KK+KE K + E K K +K + +
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTD 802
Score = 28.8 bits (65), Expect = 3.8
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ K E K +K+K++K+ K E + K K EK KD G
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEK--LKDAGVE 798
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 41.8 bits (99), Expect = 2e-04
Identities = 24/102 (23%), Positives = 69/102 (67%), Gaps = 12/102 (11%)
Query: 178 KERRKQRRRKRKRKRK------------KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ER K+R+ + + + + +EE+E E ++K EK+K+ ++E + +++ ++
Sbjct: 81 EEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIER 140
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KE++K++++++E K + +++K + E+++E +++++K+EK++
Sbjct: 141 KEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKER 182
Score = 39.5 bits (93), Expect = 0.001
Identities = 24/104 (23%), Positives = 68/104 (65%), Gaps = 11/104 (10%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKK--EEKKKEKKKEKKKEKKKKEKKKE------- 227
KER Q K++ K +++EEE+ ++ EE+ K +E+++E+K+KE+++E
Sbjct: 19 NKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQE 78
Query: 228 --KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++++K++++E +++ +E+++ E ++ +++ + + ++K++K
Sbjct: 79 QIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREK 122
Score = 38.7 bits (91), Expect = 0.002
Identities = 19/93 (20%), Positives = 65/93 (69%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E + + KR++++K EE E ++ ++KE++KE+++E++ K + +++K +++++ +
Sbjct: 111 EDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEERE 170
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++++ K++K+ E + + ++++ ++++++ DE
Sbjct: 171 AERRERKEEKEREVARLRAQQEEAEDEREELDE 203
Score = 38.4 bits (90), Expect = 0.002
Identities = 20/95 (21%), Positives = 66/95 (69%), Gaps = 11/95 (11%)
Query: 188 RKRKRKKEEEEKEEEKK-----------EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
R+++R++E EE+ +E++ E++ + ++K +K++K ++E + +++ ++K+
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+K++++E++ K E ++EK ++++++E ++++ +
Sbjct: 143 EEKEREREEELKILEYQREKAEREEEREAERRERK 177
Score = 38.0 bits (89), Expect = 0.003
Identities = 19/95 (20%), Positives = 66/95 (69%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ERR + +R + EEE+ E K++E+++E + +++ +++EK+++++ +++ ++
Sbjct: 38 EEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQE 97
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ + ++ ++E++ + ++K++K+K+ +++ DE
Sbjct: 98 REQMDEIIERIQEEDEAEAQEKREKQKKLREEIDE 132
Score = 38.0 bits (89), Expect = 0.004
Identities = 30/103 (29%), Positives = 72/103 (69%), Gaps = 5/103 (4%)
Query: 177 KKERRKQRRRKRKRKRKKEE-----EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+KER+K++ KR+R+K+E EE+ EEK+E ++E+ +E+ + ++ EK+ E ++
Sbjct: 215 RKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEEL 274
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+++ EK++ K+ + +++ E++ E+K++++ E++++ +EG R
Sbjct: 275 EQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGER 317
Score = 36.8 bits (86), Expect = 0.008
Identities = 21/100 (21%), Positives = 65/100 (65%), Gaps = 9/100 (9%)
Query: 178 KERRKQRRRKRKRK------RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
K+R K ++ +R+ ++ + EEE++E K+KE+++E + +++ +++EK+++
Sbjct: 29 KKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQ 88
Query: 232 KK---KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ + +E+++ + ++ +EE + E ++K++K++K ++
Sbjct: 89 EEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLRE 128
Score = 34.9 bits (81), Expect = 0.033
Identities = 18/85 (21%), Positives = 57/85 (67%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + K+ ++K+ R+ E E+ E+KEE+K+ +++E+ K + + +K E++++++ ++
Sbjct: 114 AEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAER 173
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKK 261
++K++KE++ + ++E+ + ++
Sbjct: 174 RERKEEKEREVARLRAQQEEAEDER 198
Score = 33.7 bits (78), Expect = 0.079
Identities = 15/85 (17%), Positives = 58/85 (68%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ER ++ + + K+ E+E+ E++ EK++ K+ E ++E +++ ++KE+++ ++++E
Sbjct: 252 EERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEE 311
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKK 262
++ ++ ++++ E + + ++++++
Sbjct: 312 LEEGERLREEEAERQARIEEERQRL 336
Score = 33.7 bits (78), Expect = 0.089
Identities = 26/118 (22%), Positives = 79/118 (66%), Gaps = 19/118 (16%)
Query: 177 KKERRKQRRRKRKRKRKKE------EEEKEEEKKEE-------------KKKEKKKEKKK 217
++E R+ RR+RK ++++E ++E+ E+++EE ++KE++KEK++
Sbjct: 165 REEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEE 224
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K++ +K+E ++ ++++ E+K+++ ++++ +EE ++E+ +K+ ++++ +++ +R
Sbjct: 225 AEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKR 282
Score = 33.0 bits (76), Expect = 0.16
Identities = 15/89 (16%), Positives = 60/89 (67%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E + + + +R ++ + EEE + E E++ ++++ E++ +K++ K+ E +++ +++ E+
Sbjct: 240 EEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEE 299
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K++++ ++++E ++ E+ ++++ + + +
Sbjct: 300 KEERRAAEREEELEEGERLREEEAERQAR 328
Score = 31.0 bits (71), Expect = 0.61
Identities = 20/96 (20%), Positives = 66/96 (68%), Gaps = 4/96 (4%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK--KEKKKEKKKKKKK 234
+ E ++ + + +EE E++E +KE+++ EK++ +K+E ++ +E+ +EK+++ ++
Sbjct: 193 EAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQE 252
Query: 235 KKEKKKKKKEK--KKKKEEKKKEKKKKKKKKEKKKK 268
++ +++ ++E+ +K+ E+++ E++ +K++ K+ +
Sbjct: 253 ERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLE 288
Score = 29.5 bits (67), Expect = 1.8
Identities = 21/105 (20%), Positives = 67/105 (63%), Gaps = 7/105 (6%)
Query: 178 KERRKQRRRKRKRK------RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+ RK+ ++R+R+ + E+ + EE++E +++E+K+EK++E + ++E+ +
Sbjct: 137 RIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAED 196
Query: 232 KKKKKEK-KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++++ ++ + +++ +++E++KEK++ +K++ +K++ R
Sbjct: 197 EREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREE 241
Score = 29.5 bits (67), Expect = 1.8
Identities = 17/81 (20%), Positives = 55/81 (67%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KE + + EEKK K +EK++E++ ++ +E++ + ++++++ K+K+++ + + ++
Sbjct: 19 NKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQE 78
Query: 253 KKEKKKKKKKKEKKKKKDEGR 273
+ E+++K++++E +++ E
Sbjct: 79 QIEEREKRRQEEYEERLQERE 99
Score = 28.7 bits (65), Expect = 3.0
Identities = 17/88 (19%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
Q +RK ++K E++E EK+ +K+E ++ ++++ ++KE++ ++++ +++ + ++
Sbjct: 207 DLYQEEYERKERQK---EKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERER 263
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+K+ + ++ E++ +K++ K+ E ++
Sbjct: 264 MLEKQAEDEELEQENAEKRRMKRLEHRR 291
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 42.0 bits (99), Expect = 2e-04
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 174 KGGKKERRKQRR------RKRKRKRKKEEEEKEEEKKEEKKKEKKKE----KKKEKKKKE 223
+ G K R + K K E + K+ KK + K + E K+
Sbjct: 334 EEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAI 393
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
E K +K E KK +E +++ E+ K KKKK++KK+ ++ R
Sbjct: 394 AYYESAKTALEKAEGKKAIEEIREELIEEG-LLKSKKKKRKKKEWFEKFR 442
Score = 36.2 bits (84), Expect = 0.017
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 14/117 (11%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK---------- 219
E + K+ + +K +++ KK E + E+++ E ++ EK E+ ++K
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQL 332
Query: 220 ----KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K + + ++ K E K K + + KK KK K K ++ E
Sbjct: 333 IEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSEL 389
Score = 35.1 bits (81), Expect = 0.033
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 21/118 (17%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEK--------------KKEKKKEKKKEKKKKE 223
KE +K + K++ + EE EK E+ +K K + ++ +
Sbjct: 293 KELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVRLADFYGNEEIK 352
Query: 224 KKKEKKKK------KKKKKEKKKKKKEKK-KKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ +K K + KK KK K + ++ + KE + + +K EG++
Sbjct: 353 IELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKK 410
Score = 32.4 bits (74), Expect = 0.29
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
++K E+ K K+ + ++K +K+ KK E K +K+E + ++ EK E+ ++K
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 30.1 bits (68), Expect = 1.4
Identities = 13/51 (25%), Positives = 33/51 (64%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++K E+ K ++ + +KK +K+ KK + K +K++ E ++ EK ++ +++
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 28.9 bits (65), Expect = 3.2
Identities = 13/51 (25%), Positives = 32/51 (62%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+EK E K ++ + ++K +KE KK + K +K++ E ++ +K ++ +++
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 42.0 bits (99), Expect = 2e-04
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 189 KRKRKKEEEE--KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
RK+ K E KE K++E KK+ ++K+ K + KK ++++ K E
Sbjct: 343 ARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFI 402
Query: 247 KKKEEKKKEKKKKKK 261
K +E K+ E K+K+
Sbjct: 403 KLEELKRLENGKQKR 417
Score = 35.8 bits (83), Expect = 0.017
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
E KE +K K+ KK+ K+K+ K E KK ++++ K + K +E K+
Sbjct: 351 YEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRL 410
Query: 269 KDE 271
++
Sbjct: 411 ENG 413
Score = 32.8 bits (75), Expect = 0.16
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK-KEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
E KE +K K+ KK+ K+K+ K + KK ++++ + + K ++ K+
Sbjct: 351 YEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRL 410
Query: 264 EKKKKKD 270
E K+K
Sbjct: 411 ENGKQKR 417
Score = 32.8 bits (75), Expect = 0.18
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KE RK++ +K+ + KE K + KK ++E+ K E K ++ K+ +
Sbjct: 354 IKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRLENG 413
Query: 237 EKKK 240
++K+
Sbjct: 414 KQKR 417
Score = 32.4 bits (74), Expect = 0.22
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ RKRK +K+ + K+ K + KK ++++ K + K +E K+
Sbjct: 354 IKENRKRKELALA---KKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRL 410
Query: 242 KKEKKKK 248
+ K+K+
Sbjct: 411 ENGKQKR 417
Score = 32.0 bits (73), Expect = 0.29
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 210 EKKKEKKKEKKKKE--KKKEKKKKKKKKKEKKKKKKEKK------KKKEEKKKEKKKKKK 261
+KK K + KE K+KE KK+ K+K+ K KK ++++ K +
Sbjct: 343 ARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFI 402
Query: 262 KKEKKKKKDEG 272
K E+ K+ + G
Sbjct: 403 KLEELKRLENG 413
Score = 30.4 bits (69), Expect = 0.95
Identities = 10/58 (17%), Positives = 27/58 (46%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
K +++ KRK K + ++ ++++ K + K E+ K+ + ++K+
Sbjct: 360 RKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRLENGKQKR 417
Score = 30.4 bits (69), Expect = 0.97
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 213 KEKKKEKKKKEKKKEKKKK--KKKKKEKKKK---KKEKKKKKEEKKKEKKKKKKKKEKKK 267
E KE +K+++ KK+ K+KE K + KK +E++ + + K ++ K+
Sbjct: 351 YEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRL 410
Query: 268 KKDEGRR 274
+ + +R
Sbjct: 411 ENGKQKR 417
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 42.4 bits (99), Expect = 2e-04
Identities = 18/60 (30%), Positives = 38/60 (63%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K R K + K ++E+E E ++ ++++ KKEK++E++ ++ + K+ KK+ KKK+
Sbjct: 1018 KDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 41.3 bits (96), Expect = 4e-04
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK---KKEK 238
+R +R + E +K E K KE+ K++++KE+ + ++ K++ KKEK
Sbjct: 992 DKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEK 1051
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKK 263
+++++ +K + K+ KK+ KKK
Sbjct: 1052 EREQRIRKTIHDNYKEMAKKRLKKK 1076
Score = 40.9 bits (95), Expect = 5e-04
Identities = 20/86 (23%), Positives = 48/86 (55%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+R ++ E E +E+ + + + K++ K ++EK++ + ++ K++E KK+K
Sbjct: 992 DKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEK 1051
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKKK 269
E++++ + + K+ KK KKK+
Sbjct: 1052 EREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 40.1 bits (93), Expect = 0.001
Identities = 16/66 (24%), Positives = 41/66 (62%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ +EK + K + K++ K +++K++ E ++ KE++ K+EK++E++ +K + K+
Sbjct: 1009 PECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEM 1068
Query: 270 DEGRRR 275
+ R +
Sbjct: 1069 AKKRLK 1074
Score = 32.4 bits (73), Expect = 0.27
Identities = 16/88 (18%), Positives = 43/88 (48%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ + E E + +K+ ++ E + +EK + K + +++ K
Sbjct: 968 SEEMGYGAEEDYSLPREIESKLPLDKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIK 1027
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+E+K++ E ++ K+++ KKEK++++
Sbjct: 1028 DQEEKERMESLQRAKEEEIGKKEKEREQ 1055
Score = 30.1 bits (67), Expect = 1.5
Identities = 16/92 (17%), Positives = 45/92 (48%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E + ++ E + +K+ ++ E + +EK + K + K++ +
Sbjct: 968 SEEMGYGAEEDYSLPREIESKLPLDKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIK 1027
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+++K+ + + K++E KK+K++E++ +K
Sbjct: 1028 DQEEKERMESLQRAKEEEIGKKEKEREQRIRK 1059
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 42.0 bits (98), Expect = 2e-04
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKK--KEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ + +KRK +EEEEK+ + K+KK K+ K KKE++ E KKKKK+ K+K
Sbjct: 526 NKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQK 585
Query: 241 KKKEKK 246
K KK
Sbjct: 586 KLDSKK 591
Score = 41.6 bits (97), Expect = 3e-04
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKK----KKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
E K+ K K K++K E+++EKK K K+K+ KK K KKEE+ + KKKKK
Sbjct: 520 EADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKK 579
Query: 262 KKEKKKKKD 270
+ K+KK D
Sbjct: 580 QIAKQKKLD 588
Score = 35.4 bits (81), Expect = 0.028
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK-KKKEEK 252
+E+++ +EE + +K+ E + + K + E K+ K K KK++ ++++EKK K
Sbjct: 491 EEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMS 550
Query: 253 KKEKKKKKKKKEKKKKKDE 271
K+KK KK K KK+E
Sbjct: 551 NKQKKLYKKMKYSNAKKEE 569
Score = 33.9 bits (77), Expect = 0.091
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ + E++++ EE + +K+ E + + K + E K K K KK+K E++++
Sbjct: 482 DVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEE 541
Query: 249 KEEKKKEKKKKKKKKEKKKKKDEGRR 274
K+ K K+KK KK K ++
Sbjct: 542 KKLKMIMMSNKQKKLYKKMKYSNAKK 567
Score = 30.4 bits (68), Expect = 1.2
Identities = 16/80 (20%), Positives = 42/80 (52%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ +R +++ + E+ + E ++ + E+ + +K+ E + + K E + K+
Sbjct: 467 ETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVN 526
Query: 247 KKKEEKKKEKKKKKKKKEKK 266
K K +K+K +++++KK K
Sbjct: 527 KSKNKKRKVDEEEEEKKLKM 546
Score = 28.5 bits (63), Expect = 4.3
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEE-KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
QR + + E+ E EE +++ + +KE + + + + + + K+
Sbjct: 467 ETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVN 526
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K K +K+K EE++++K K K+KK
Sbjct: 527 KSKNKKRKVDEEEEEKKLKMIMMSNKQKK 555
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 41.9 bits (98), Expect = 2e-04
Identities = 24/95 (25%), Positives = 42/95 (44%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K +++ + K +E + K E +KK E + + EK K E + + K +KK +
Sbjct: 164 KAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEA 223
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++K +KKK K K K K ++K
Sbjct: 224 AAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAA 258
Score = 41.5 bits (97), Expect = 3e-04
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K++ +Q R+ ++KK E K + E K + E KK+ ++ K E+ K K +
Sbjct: 131 QKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAA 190
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KKK + + K EK K + + K K EKK +
Sbjct: 191 AAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEA 223
Score = 41.1 bits (96), Expect = 3e-04
Identities = 27/100 (27%), Positives = 46/100 (46%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K + + K K K E ++K EE + ++ K K + KKK + + K +K
Sbjct: 147 KKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K E + K K +KK + +++ +KKK K K D+
Sbjct: 207 AKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAA 246
Score = 40.3 bits (94), Expect = 7e-04
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K+K ++ + EE K + + KK+ + E K +K + + + K K EKK + ++K
Sbjct: 170 KKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKA 229
Query: 249 KEEKKKEKKKKKKKKEKKKKKDEGRR 274
EKKK K K K K R+
Sbjct: 230 AAEKKKAAAKAKADKAAAAAKAAERK 255
Score = 40.3 bits (94), Expect = 7e-04
Identities = 22/91 (24%), Positives = 58/91 (63%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E++++++ ++ + K ++ E+E+ ++ +KE+ K ++++K+ +E +K+ + ++K+++
Sbjct: 76 KGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQE 135
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
E+ +K ++KKK E K K + K K
Sbjct: 136 EQARKAAAEQKKKAEAAKAKAAAEAAKLKAA 166
Score = 38.4 bits (89), Expect = 0.002
Identities = 26/95 (27%), Positives = 55/95 (57%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ +Q R K+ K + + +E++++ +E +K+ + ++K++E++ ++ E+KKK + K
Sbjct: 94 PKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAK 153
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + K K E KK+ ++ K E+ K K E
Sbjct: 154 AKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAE 188
Score = 38.4 bits (89), Expect = 0.003
Identities = 25/97 (25%), Positives = 49/97 (50%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +++++ + K+ + +K++EE+ + E+KK+ + K K + K K + KK
Sbjct: 112 KAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKK 171
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K +E K +E K K E +KK + + K +K
Sbjct: 172 KAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAK 208
Score = 38.0 bits (88), Expect = 0.003
Identities = 25/95 (26%), Positives = 55/95 (57%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ K+R + ++++++ EE EK+ + ++++++E+ ++ E+KKK + + K + K
Sbjct: 103 LKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAK 162
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + +KK ++ K E+ K K + KKK E
Sbjct: 163 LKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAE 197
Score = 36.9 bits (85), Expect = 0.008
Identities = 21/90 (23%), Positives = 60/90 (66%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R + ++ K+ ++ ++++E+ +E K K+ ++++ ++ +KE+ K ++++K+ ++ +K
Sbjct: 66 RIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK 125
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ + E+K+++E+ +K ++KKK E K K
Sbjct: 126 QAQLEQKQQEEQARKAAAEQKKKAEAAKAK 155
Score = 35.7 bits (82), Expect = 0.020
Identities = 19/95 (20%), Positives = 47/95 (49%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K ++ ++ + +++++ + + E++KK E K K + + K + K+K ++
Sbjct: 118 KQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAA 177
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K E+ K K E K++ + E K +K + + +
Sbjct: 178 KAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAE 212
Score = 35.3 bits (81), Expect = 0.029
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E + + K K + +K+ E + + EK K + + K K EKK E ++K
Sbjct: 172 KAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAA 231
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
EKKK K K ++ K ++K D
Sbjct: 232 EKKKA--AAKAKADKAAAAAKAAERKAAAAALDD 263
Score = 33.8 bits (77), Expect = 0.091
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
++ R ++ K + K ++++++ EE +K+ + ++K++E++ K E+KK+ + K K
Sbjct: 99 EQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAA 158
Query: 238 KKKKKK---EKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K K E KKK EE K ++ K K E K +
Sbjct: 159 EAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKK 195
Score = 33.0 bits (75), Expect = 0.14
Identities = 17/85 (20%), Positives = 58/85 (68%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
R + ++ ++ E+++K+++++ ++ K K+ ++E+ K+ +K++ K +E++K+ +E +
Sbjct: 65 GRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAE 124
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ + ++K+++++ +K ++KK
Sbjct: 125 KQAQLEQKQQEEQARKAAAEQKKKA 149
Score = 29.5 bits (66), Expect = 2.0
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK--KEKKKKEKKKEKKKK 231
K +K+ + K +K + E E + K EKK E E+K EKKK K + K
Sbjct: 186 KAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKA 245
Query: 232 KKKKKEKKKKKKEK 245
K ++K
Sbjct: 246 AAAAKAAERKAAAA 259
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 41.5 bits (98), Expect = 2e-04
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Y+ + E+ + + K+ E + E++ E KK K EK +EK+K+ ++ E+ +
Sbjct: 284 YENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKK-KFTEKIREKEKRLEELEQNLIE 342
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++K+ K ++ +KK ++ +K+ +K K K
Sbjct: 343 ERKELNSKLEEIQKKLEDLEKRLEKLKSNKS 373
Score = 40.4 bits (95), Expect = 6e-04
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK-KKKKK 243
R ++ K E +E E + E+++E KK K EK +EK+K+ ++ ++ +++K
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKK--KFTEKIREKEKRLEELEQNLIEERK 345
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKKK 269
E K EE +K+ + +K+ EK K
Sbjct: 346 ELNSKLEEIQKKLEDLEKRLEKLKSN 371
Score = 39.2 bits (92), Expect = 0.001
Identities = 18/74 (24%), Positives = 35/74 (47%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
+ ++R K+K K E+EK E+ E+ E++KE + ++ +KK E
Sbjct: 300 EPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLE 359
Query: 228 KKKKKKKKKEKKKK 241
+K+ +K + K
Sbjct: 360 DLEKRLEKLKSNKS 373
Score = 37.7 bits (88), Expect = 0.004
Identities = 20/86 (23%), Positives = 47/86 (54%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
R ++ K + +E E + E+++E KK+ ++ ++KEK+ E+ ++ ++ K+
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKEL 347
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKK 266
K ++ +K+ + EK+ +K K K
Sbjct: 348 NSKLEEIQKKLEDLEKRLEKLKSNKS 373
Score = 33.8 bits (78), Expect = 0.071
Identities = 17/79 (21%), Positives = 44/79 (55%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ E+ + E KE + + E++++ KKK +K ++K+K ++ ++ ++++E
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKEL 347
Query: 253 KKEKKKKKKKKEKKKKKDE 271
+ ++ +KK E +K+ E
Sbjct: 348 NSKLEEIQKKLEDLEKRLE 366
Score = 33.5 bits (77), Expect = 0.092
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+ + KE + + +E+++ KKK +K +EK+K+ +E ++ E++KE K +
Sbjct: 293 SGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLE 352
Query: 262 KKEKKKKKDEGR 273
+ +KK + E R
Sbjct: 353 EIQKKLEDLEKR 364
Score = 28.8 bits (65), Expect = 3.1
Identities = 15/74 (20%), Positives = 37/74 (50%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
E E E + +K K + K+ + + +++ + KKK +K +++EK+ E+
Sbjct: 277 ETTENLLYENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEEL 336
Query: 258 KKKKKKEKKKKKDE 271
++ +E+K+ +
Sbjct: 337 EQNLIEERKELNSK 350
Score = 28.1 bits (63), Expect = 6.0
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E + EK K + K+ + + ++++E KKK EK ++KE++ +E ++ ++
Sbjct: 285 ENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEER 344
Query: 265 KKKKKDEGRR 274
K+
Sbjct: 345 KELNSKLEEI 354
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 41.9 bits (99), Expect = 2e-04
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKE-------KKKEKKKEKKKKEKKKEKKKKKKK 234
K + K +R++ KEE+E E+ ++ K+ K K +EK E ++ ++
Sbjct: 185 KSKFYKAERQKAKEEDEDLREELDDDFKDLMSLLRTVKPPPKPPMTPEEKDDEYDQRVRE 244
Query: 235 -KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+++ + ++ K +EE KE+ ++ KK E ++ +
Sbjct: 245 LTFDRRAQPTDRTKTEEELAKEEAERLKKLEAERLR 280
Score = 29.6 bits (67), Expect = 2.2
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE----EKKKEKKKKKKKKEKKKK 268
+KK +E+ + K K + KKE+K +E +K EK KEKK+K + KK K
Sbjct: 737 PDKKSYDPDRERAELNKLKAQLKKERKGAMRELRKDNRFIAREKLKEKKEKDAEYHKKMK 796
Query: 269 K 269
+
Sbjct: 797 R 797
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 41.5 bits (97), Expect = 2e-04
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KK ++K E+K+ K+ K+ K KK K K KK + KK K K K+
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVT 64
Query: 253 KKEKKKKKKKKEKKKKK 269
K +K + KKE KK
Sbjct: 65 VKFEKTESVKKESVAKK 81
Score = 39.2 bits (91), Expect = 0.001
Identities = 33/87 (37%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK---KKEKKKEKKKKKKKKKEKKKKKK 243
K+ K+K EE+K KK KE K KK K K KK K KK K K KK
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVT 64
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K +K E KKE KK K++ +
Sbjct: 65 VKFEKTESVKKESVAKKTVKKEAVSAE 91
Score = 37.6 bits (87), Expect = 0.004
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 199 KEEEKKEEKKK---EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E KK KKK EKK KK KE K KK K + KK + KK K K
Sbjct: 1 MAETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTT 60
Query: 256 KKKKKKKKEKKKKKDE 271
KK K ++ + K E
Sbjct: 61 KKVTVKFEKTESVKKE 76
Score = 37.6 bits (87), Expect = 0.004
Identities = 22/82 (26%), Positives = 35/82 (42%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
++K ++ +E + KK K K KK + KK K K KK K +K + K
Sbjct: 15 EKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVK 74
Query: 249 KEEKKKEKKKKKKKKEKKKKKD 270
KE K+ KK+ + +
Sbjct: 75 KESVAKKTVKKEAVSAEVFEAS 96
Score = 36.9 bits (85), Expect = 0.009
Identities = 24/94 (25%), Positives = 37/94 (39%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K ++ + K K+ + + KK K K+ K K KK K ++ + KK
Sbjct: 16 KKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKK 75
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ KK KKE + + K K K KK
Sbjct: 76 ESVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKK 109
Score = 35.7 bits (82), Expect = 0.018
Identities = 22/91 (24%), Positives = 37/91 (40%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K+ ++ K K ++ K K KK K K+ K K +K K +K + K
Sbjct: 15 EKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVK 74
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
++ KK KK+ + + K K K
Sbjct: 75 KESVAKKTVKKEAVSAEVFEASNKLFKNTSK 105
Score = 33.0 bits (75), Expect = 0.14
Identities = 21/79 (26%), Positives = 32/79 (40%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K + ++ K ++ K K KK K EK + KK+ KK KK+ + E
Sbjct: 37 KTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEAS 96
Query: 247 KKKEEKKKEKKKKKKKKEK 265
K + + KK EK
Sbjct: 97 NKLFKNTSKLPKKLFASEK 115
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 42.0 bits (99), Expect = 3e-04
Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK-KKKEKKKEKKKK 231
+ K+ R + +R KE EEKEE +E KKK K+ EK+ E+ +++ + E+ K
Sbjct: 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKA 369
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK++ E+ KK+ ++ +K+ ++ +K K+E +++ + R
Sbjct: 370 KKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITAR 413
Score = 41.6 bits (98), Expect = 3e-04
Identities = 25/98 (25%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E + R K +++ +E E+ +E+ EE +KE + + ++K +EK +E +++ ++ K+
Sbjct: 214 SELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKK 273
Query: 238 KKKKKKEKKKKKEE-KKKEKKKKKKKKEKKKKKDEGRR 274
+ ++ +EK K+ +E K+K ++ K + ++ DE R
Sbjct: 274 EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE 311
Score = 40.8 bits (96), Expect = 5e-04
Identities = 29/97 (29%), Positives = 55/97 (56%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Y +E K+ R + EE KE E+KEE+ +E KK+ K+ +K+ E+ +E+ +
Sbjct: 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY 364
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ K KK++ + KK+ EK +K+ ++ +K K+
Sbjct: 365 EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE 401
Score = 40.8 bits (96), Expect = 5e-04
Identities = 25/96 (26%), Positives = 58/96 (60%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE+ ++ + + + +E +E EK+ + +E+ ++ K+ E+K+E+ ++ KKK +
Sbjct: 289 KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK 348
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ +K+ E+ +++ E +E K KK++ E+ KK+ G
Sbjct: 349 ELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL 384
Score = 40.8 bits (96), Expect = 7e-04
Identities = 27/111 (24%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
G K +E+ ++ + + +K+ EE +E+ K+ ++ KEK +E K + E+ ++ ++
Sbjct: 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE 311
Query: 232 KKKKKEKK-------KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K+ + +++ ++ ++KEE+ +E KKK K+ EK+ ++ E R
Sbjct: 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE 362
Score = 40.0 bits (94), Expect = 0.001
Identities = 22/98 (22%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 178 KERRKQRRRKRKRKRKKEE--EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+E K + ++ + KEE E ++E + E K K +EK +E +++ ++ +K+ ++ ++
Sbjct: 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEE 280
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K K+ K+ ++K ++ K E ++ + ++ +K R
Sbjct: 281 KVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSR 318
Score = 39.7 bits (93), Expect = 0.001
Identities = 25/102 (24%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEE---EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ + ++ K KE E E+ EE ++E + + ++K E+K +E ++ ++ KK
Sbjct: 214 SELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKK 273
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ +E ++K KE K+ KE+ ++ K + +E + E +R
Sbjct: 274 EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKR 315
Score = 39.3 bits (92), Expect = 0.002
Identities = 26/96 (27%), Positives = 57/96 (59%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K + E + + + + EE E+ +KE K+ E+ KE+ +E +K+ + E K+K
Sbjct: 198 KEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKL 257
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++K ++ +++ ++ KKE ++ E+K K+ K+ K+K +
Sbjct: 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAE 293
Score = 39.3 bits (92), Expect = 0.002
Identities = 21/90 (23%), Positives = 53/90 (58%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + R++ E+ ++E K+ E+ KE+ +E +KE + E K K ++K ++
Sbjct: 205 VLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIREL 264
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
E++ ++ +K+ ++ E+K ++ K+ K+K ++
Sbjct: 265 EERIEELKKEIEELEEKVKELKELKEKAEE 294
Score = 38.1 bits (89), Expect = 0.004
Identities = 28/100 (28%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K++ ++ R+ + E +EE +K EK+ ++ +E K+E ++ EK+ E + K+K
Sbjct: 198 KEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKL 257
Query: 237 EKKKKKKEK--KKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
E+K ++ E+ ++ K+E ++ ++K K+ KE K+K +E +
Sbjct: 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK 297
Score = 37.4 bits (87), Expect = 0.007
Identities = 20/91 (21%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ ++++KE EE E E + + ++ EK +KE K+ ++ K++ ++ +K+ + +
Sbjct: 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
Query: 247 KKK--EEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+ EEK +E +++ ++ +K+ ++ E + +
Sbjct: 253 SKRKLEEKIRELEERIEELKKEIEELEEKVK 283
Score = 36.2 bits (84), Expect = 0.017
Identities = 20/93 (21%), Positives = 55/93 (59%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ +R+ ++ R+ EE +E +K+ E+ +EK KE K+ K+K E+ + + ++
Sbjct: 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYL 306
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ ++ +++ + EE+ +++ K+ E+K+++
Sbjct: 307 DELREIEKRLSRLEEEINGIEERIKELEEKEER 339
Score = 35.8 bits (83), Expect = 0.021
Identities = 24/95 (25%), Positives = 53/95 (55%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ +KE R + +K+ ++ +K EE EE + ++ + KKE+ + KK+ +K +K
Sbjct: 332 ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEK 391
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ +E +K K+E +++ + + KK+ ++ KK
Sbjct: 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
Score = 35.8 bits (83), Expect = 0.022
Identities = 23/102 (22%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKE-----------KKKEKKKKEKKK 226
ER ++ +K + + K EE E +K ++ K+ E ++ ++ E +
Sbjct: 614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
E + + +E +K+++E KK E+ K+E ++++K K++ +K
Sbjct: 674 ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
Score = 35.4 bits (82), Expect = 0.027
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ R ++ K++ + K +E E+ K+ E+K +K ++ EKK +E +K K+K K K
Sbjct: 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E K KKE +K +E KKK + +KK E +++ E
Sbjct: 540 EIKSLKKELEKLEELKKKLAELEKKLDELEEELAE 574
Score = 35.4 bits (82), Expect = 0.027
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKE--------KKKEKKKEKKKKEKKKE 227
G +ER K+ K +R + +++ KE EK+ E+ +E K K+++ E+ KK
Sbjct: 325 GIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL 384
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K +K+ E+ +K KE+ +++ K + + KK+ K+ KK
Sbjct: 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
Score = 35.0 bits (81), Expect = 0.036
Identities = 23/101 (22%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E+ +R K +K ++E ++ EE E +K+ ++ K+ E+ +K+ +E+ ++ +++ +
Sbjct: 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLE 670
Query: 239 K--------KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +E +K++EE KK +K K++ E+++K +
Sbjct: 671 LSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK 711
Score = 34.7 bits (80), Expect = 0.053
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 15/112 (13%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKE-EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E K+ KRK EE+ +E EE+ EE KKE ++ ++K K+ KE K++ ++ K +
Sbjct: 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEF 301
Query: 238 KKKKKKEKKKKKEEK--------------KKEKKKKKKKKEKKKKKDEGRRR 275
++ E ++ ++ K+ ++K+++ +E KKK E +R
Sbjct: 302 YEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKR 353
Score = 34.7 bits (80), Expect = 0.058
Identities = 25/97 (25%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K +K+ + ++ ++ +E EE+ K+ +E +K+ ++ +K KEK + K + K K+
Sbjct: 487 KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
Query: 238 KKKKKKEKKKKKE--EKKKEKKKKKKKKEKKKKKDEG 272
+ +K +E KKK EKK ++ +++ + K+ ++ G
Sbjct: 547 ELEKLEELKKKLAELEKKLDELEEELAELLKELEELG 583
Score = 33.9 bits (78), Expect = 0.093
Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK-EKKKKEKKKEKKKKKKKK 235
K+ER ++ ++K K K+ EE +E + E+ K KK+E ++ +K+ EK +K+ ++
Sbjct: 336 KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEE 395
Query: 236 KEKKKKKKEKK------KKKEEKKKEKKKKKKKKEKKKKK 269
EK K++ E++ + E KK+ K+ KK +E KK K
Sbjct: 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
Score = 33.9 bits (78), Expect = 0.11
Identities = 24/86 (27%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
++R + RK +E E+K E++ E+ +E+ E +E + E+ +K++++ +K
Sbjct: 637 ETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696
Query: 241 KK-KEKKKKKEEKKKEKKKKKKKKEK 265
+K KE+ +++E+ KKE +K +K E+
Sbjct: 697 EKLKEELEEREKAKKELEKLEKALER 722
Score = 33.5 bits (77), Expect = 0.12
Identities = 26/94 (27%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK-KEKKKKKKKK 235
KK+ ++ +R + + + E E+ + KKEE ++ KK+ +K EK+ +E +K K++
Sbjct: 344 KKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+E+ K + + +++ KE KK ++ +K K K
Sbjct: 404 EEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
Score = 33.5 bits (77), Expect = 0.13
Identities = 22/82 (26%), Positives = 48/82 (58%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K E+E E E+KE KK E++ +K E+ + +K+ ++ +K+ ++ +KK +E+ ++ E+
Sbjct: 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREE 667
Query: 253 KKEKKKKKKKKEKKKKKDEGRR 274
E ++ + ++ E RR
Sbjct: 668 YLELSRELAGLRAELEELEKRR 689
Score = 33.5 bits (77), Expect = 0.13
Identities = 24/93 (25%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKE-KKKEKKKKEKKKEKKKKKKKK 235
+ E+R + RK + +K+ E+E E+ E+ E +E + +E +K +++ KK
Sbjct: 637 ETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ K++ +E++K K+E +K +K ++ +E ++K
Sbjct: 697 EKLKEELEEREKAKKELEKLEKALERVEELREK 729
Score = 32.7 bits (75), Expect = 0.23
Identities = 34/98 (34%), Positives = 56/98 (57%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+++ RK+ R K +K+ E K +E E+ K+ ++K KK ++ EKK E+ +K K+K
Sbjct: 475 ERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K K + + KK+ EK +E KKK + EKK + E
Sbjct: 535 IKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL 572
Score = 32.0 bits (73), Expect = 0.35
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
KK ++ R+ + E + E+ +++++E KK +K +++ E+++K KK+
Sbjct: 653 EKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKK 261
EK +K E+ ++ EK K+ K K
Sbjct: 713 LEKLEKALERVEELREKVKKYKALLK 738
Score = 32.0 bits (73), Expect = 0.35
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK-KKEKKKKKKKKKEKKKKKKEKK 246
+ + + E +E + +E +K +++ KK EK K+E ++++K KKE +K +K +
Sbjct: 662 EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
Query: 247 KKKEEKKKEKKKKKKKKE 264
+ +E ++K KK K KE
Sbjct: 722 RVEELREKVKKYKALLKE 739
Score = 31.6 bits (72), Expect = 0.45
Identities = 20/85 (23%), Positives = 48/85 (56%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ + +K+ + +K+ +E EEE E K+ ++ + ++ +E+ KE + + E K
Sbjct: 550 KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKD 609
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEK 265
+KE +++++E KK +++ K E+
Sbjct: 610 AEKELEREEKELKKLEEELDKAFEE 634
Score = 31.6 bits (72), Expect = 0.52
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ R R +E E++ EE K+ +K K++ +++EK KKE +K +K ++ ++
Sbjct: 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
Query: 237 EKKKKKKEKKKKKEEKKKE 255
++K KK K KE +
Sbjct: 726 LREKVKKYKALLKERALSK 744
Score = 30.8 bits (70), Expect = 0.77
Identities = 23/110 (20%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKK--------KEKKKEKKKEKKKKEKK 225
+E + ++ + + EE EE KE + K+ +KE ++E+K+ +K
Sbjct: 565 LDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKL 624
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+E+ K ++ + +K+ E+ +K+ E+ ++K +++ +E +++ E R
Sbjct: 625 EEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRE 674
Score = 30.4 bits (69), Expect = 1.1
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK----- 226
G K E+ + K K + ++E + E KK+ K+ +K E+ KK K K
Sbjct: 383 GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG 442
Query: 227 -----EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
E +K+ ++ + K+ EK+ K+ E+K+ K +K+ ++ +K K E
Sbjct: 443 RELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE 494
Score = 30.4 bits (69), Expect = 1.3
Identities = 29/107 (27%), Positives = 59/107 (55%)
Query: 165 CGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
CG L ++ E ++ +++ K+ EE++ + +KE ++ EK +K+ E K ++
Sbjct: 441 CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+ K+ ++K +K ++ +KK +E +K ++K K K E K K E
Sbjct: 501 LAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE 547
Score = 29.6 bits (67), Expect = 2.2
Identities = 20/87 (22%), Positives = 55/87 (63%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ RK+ EE +++ +EE ++ +++ + ++ + E ++ +K+++E KK ++ K++
Sbjct: 643 EELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE 702
Query: 249 KEEKKKEKKKKKKKKEKKKKKDEGRRR 275
EE++K KK+ +K ++ ++ +E R +
Sbjct: 703 LEEREKAKKELEKLEKALERVEELREK 729
Score = 29.3 bits (66), Expect = 2.9
Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+E K + + K K + + +KE EK EE KK+ + +KK + +E+ E K+ ++
Sbjct: 524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELG 583
Query: 237 EKKKKKKEKKKKKEE---------KKKEKKKKKKKKEKKKKKDE 271
+ ++ E++ K+ E K EK+ ++++KE KK ++E
Sbjct: 584 FESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEE 627
Score = 28.5 bits (64), Expect = 4.6
Identities = 23/96 (23%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEE--KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
KE + K ++E E+EE+ KK E++ +K E+ E +K+ ++ K+ ++ +K
Sbjct: 595 KELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K +++ +E +++ E +E + + E+ +K+ E
Sbjct: 655 KYSEEEYEELREEYLELSRELAGLRAELEELEKRRE 690
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 42.0 bits (99), Expect = 3e-04
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
E KE +K K+K K K ++K K +K KK K E + + K
Sbjct: 440 IELPFKEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIK-EFETDALK 498
Query: 259 KKKKKEKKKKKDE 271
++ EK K E
Sbjct: 499 LQEILEKVDSKSE 511
Score = 36.6 bits (85), Expect = 0.012
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKE---KKKKEKKKEKKKKKKKKKEKKKKKKEK--KKK 248
E KE +K K + K K +EK K +K KK K+ E K
Sbjct: 440 IELPFKEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKL 499
Query: 249 KEEKKKEKKKKKKKKEKKKKKDE 271
+E +K K +K ++ K D
Sbjct: 500 QEILEKVDSKSEKLEKISAKIDN 522
Score = 34.6 bits (80), Expect = 0.049
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE------KKKKK 242
+ + K + ++K K +K KK + KE + K +E K +K
Sbjct: 453 DKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQEILEKVDSKSEK 512
Query: 243 KEKKKKKEEKKKEKKKKKKKK 263
EK K + KE + K
Sbjct: 513 LEKISAKIDNIKELFDESKMS 533
Score = 34.3 bits (79), Expect = 0.069
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 213 KEKK-KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK--KKEKKKKKKKKEKKKKK 269
E KE +K K+K K K +EK K + KK K+ + K
Sbjct: 440 IELPFKEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKL 499
Query: 270 DEG 272
E
Sbjct: 500 QEI 502
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 39.6 bits (93), Expect = 3e-04
Identities = 32/96 (33%), Positives = 64/96 (66%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E + K K++ E+EE +++++E+K+K+++K KK K+++KK++KKKKKK KK
Sbjct: 47 REYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKG 106
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
KK++KE K EE E+++ ++ K+++ + +
Sbjct: 107 NKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 37.3 bits (87), Expect = 0.002
Identities = 28/83 (33%), Positives = 58/83 (69%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KKE + ++++ ++K+++EEK +K+ +++K+K+K+KKK+K KK KKE+K+ K +
Sbjct: 60 KKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSE 119
Query: 237 EKKKKKKEKKKKKEEKKKEKKKK 259
E +++E ++ K+E+ E +K
Sbjct: 120 ESSDEEEEGEEDKQEEPVEIMEK 142
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 41.2 bits (97), Expect = 3e-04
Identities = 13/61 (21%), Positives = 34/61 (55%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E +E+ +++ ++ K+K K K K ++ K+++ + +KKK+++ K E++ +
Sbjct: 335 GEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Query: 261 K 261
Sbjct: 395 N 395
Score = 40.5 bits (95), Expect = 6e-04
Identities = 14/61 (22%), Positives = 35/61 (57%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E +E+ +++ +K K+K K K K E+ KK++ + ++++K+K+ K +++ +
Sbjct: 335 GEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Query: 265 K 265
Sbjct: 395 N 395
Score = 40.1 bits (94), Expect = 8e-04
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+E+ +K+ +K ++K K K K E KKE+ + ++K+K+KK RR
Sbjct: 340 ISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRG 392
Score = 40.1 bits (94), Expect = 9e-04
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+EE +K +K ++K K K K E+ K+++ + ++K+K+KK K +++
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Query: 250 EE 251
+
Sbjct: 394 QN 395
Score = 39.3 bits (92), Expect = 0.001
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+++ EK+ EK K+K K K K + KK++ + + KKK+KK K +++
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Score = 39.3 bits (92), Expect = 0.002
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
++E +K+ +K ++K K + K E+ KK++ + ++KKK++K K + +
Sbjct: 340 ISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 39.3 bits (92), Expect = 0.002
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+++ +K+ +K K+K K K K E+ KK+ + +KKK+KK + +++ +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Score = 38.1 bits (89), Expect = 0.003
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E +EE +K +K K+K K K K ++ KK++ ++KKKEKK K E + +
Sbjct: 335 GEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Query: 256 K 256
Sbjct: 395 N 395
Score = 37.0 bits (86), Expect = 0.008
Identities = 13/53 (24%), Positives = 32/53 (60%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+E+ +++ +K K+K K K + ++ K+E+ ++KKK+K+ K ++ +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 36.6 bits (85), Expect = 0.012
Identities = 13/61 (21%), Positives = 33/61 (54%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E R+ KR ++ +EK + + K E+ K+++ + +++KK++K K +++ +
Sbjct: 335 GEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Query: 238 K 238
Sbjct: 395 N 395
Score = 29.7 bits (67), Expect = 1.8
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
G G R + +R K K K + + + + +KK+ + ++K+K+KK K + + +
Sbjct: 335 GEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Query: 232 K 232
Sbjct: 395 N 395
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 41.2 bits (96), Expect = 4e-04
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK----------------K 217
K +K +K K+ +KKE++EKE+E+ ++KKKE + K +
Sbjct: 185 KSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAE 244
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + ++ K + ++ KK K K+KK++K+K+EKKKKK R
Sbjct: 245 ADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 33.5 bits (76), Expect = 0.12
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
++ + E K +K +KK KK KKK+KKEK+K++ + KKK+ E K
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 33.5 bits (76), Expect = 0.12
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+ EK +K + K +K EKK KK KKKEKK+K+KE+ K +KKKE +
Sbjct: 169 DSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDK---DKKKEVEGF 225
Query: 260 K 260
K
Sbjct: 226 K 226
Score = 33.1 bits (75), Expect = 0.15
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ EK +K + K +K + EKK +K KKK+KK+++K++ K+KKK+ E K
Sbjct: 169 DSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 32.3 bits (73), Expect = 0.26
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++ + E K +K EKK KK +KK+KKE++K+ K KKK+ E K
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLL 229
Score = 32.0 bits (72), Expect = 0.37
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
++ + E K +K +KK KK +KK+KK+K+KE+ K KK++ + +
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 31.6 bits (71), Expect = 0.50
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ + +E K+ + +E KK K +KKK+ K+KE+KKKKKK + +
Sbjct: 256 GTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGG 309
Score = 30.8 bits (69), Expect = 0.90
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K + E K +K +KK KK KK+EKK+++K++ K K+K+ + +
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 30.0 bits (67), Expect = 1.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
K EEE+ ++ EK K +KK+++KEK+ + +
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHS 116
Score = 29.6 bits (66), Expect = 1.9
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K +E+++ ++ EK K++KKK+EK+K+ + +
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 29.6 bits (66), Expect = 2.0
Identities = 11/41 (26%), Positives = 27/41 (65%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K +E+++ +++ EK K +KKK++K+K +++ + +E
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDE 123
Score = 29.6 bits (66), Expect = 2.1
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 32/126 (25%)
Query: 177 KKERRKQRRRKRKRKRKKEEE---EKEEEKKEEKKKEKKKEKKKEK-------------- 219
K +R K++R K KR R++ E +E+ + + E+ E
Sbjct: 96 KDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENALPSDEDDKDPNDP 155
Query: 220 ---------------KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+K +K + + K EK +KK K+ KKKEKK+K+K+++
Sbjct: 156 YRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERD 215
Query: 265 KKKKKD 270
K KKK+
Sbjct: 216 KDKKKE 221
Score = 28.9 bits (64), Expect = 3.2
Identities = 9/33 (27%), Positives = 26/33 (78%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K EE+++ +++ +K +++KK+++KEK+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 28.5 bits (63), Expect = 5.0
Identities = 11/33 (33%), Positives = 25/33 (75%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K +E+++ +++ +K K+EKKK++KEK+ ++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 27.3 bits (60), Expect = 9.7
Identities = 10/33 (30%), Positives = 26/33 (78%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K ++E++ +++ +K K+E+KK+EK+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 41.3 bits (97), Expect = 4e-04
Identities = 20/105 (19%), Positives = 40/105 (38%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
D+L KK ++ + + E +E ++ EK K KK K+ + +
Sbjct: 6 DSLPDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNP 65
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K K + ++K K +K + K K + ++E
Sbjct: 66 KKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEE 110
Score = 29.4 bits (66), Expect = 2.3
Identities = 13/69 (18%), Positives = 29/69 (42%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++K KK KK + K + ++ + + ++ +K + KK +E + + KK
Sbjct: 9 PDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKS 68
Query: 265 KKKKKDEGR 273
K +
Sbjct: 69 SKPTESSAA 77
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 41.3 bits (97), Expect = 4e-04
Identities = 17/108 (15%), Positives = 57/108 (52%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
LE K + + + K K + + + + E E+ + ++E K+ KK +E ++E
Sbjct: 165 GLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEE 224
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+++++ +++ + +++ + ++E+++ E+ K + + + + + + R
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIR 272
Score = 40.5 bits (95), Expect = 7e-04
Identities = 21/94 (22%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
E +++ + + + ++E + E E++ E+K E+ ++ ++E ++ ++ E+ KK
Sbjct: 651 LLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKK 710
Query: 233 KKKKEKKKKK-KEKKKKKEEKKKEKKKKKKKKEK 265
+ E+ ++ + +K + EE KKE +K +K E
Sbjct: 711 LGEIEQLIEELESRKAELEELKKELEKLEKALEL 744
Score = 39.7 bits (93), Expect = 0.001
Identities = 12/93 (12%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
++ +R + EEE++ E+ + + E + + + K +E++ + ++ ++ E+K
Sbjct: 231 EQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKI 290
Query: 241 K--KKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ ++ +++ +E +++ + + +E ++ ++
Sbjct: 291 ERLEELEREIEELEEELEGLRALLEELEELLEK 323
Score = 39.0 bits (91), Expect = 0.002
Identities = 19/103 (18%), Positives = 54/103 (52%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
L+ + + + + + R+ E +E E+K E+ +E ++E ++ +++ E +
Sbjct: 254 LKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRAL 313
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ ++ EK K +E+ +K EEK ++ + + ++ ++K +
Sbjct: 314 LEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELA 356
Score = 39.0 bits (91), Expect = 0.002
Identities = 22/100 (22%), Positives = 56/100 (56%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+KE + + + ++ EKEE + E+ +E +KE ++ +++ + E ++ K++
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEE 530
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E+K +K E ++ E+ KEK + ++ KE+ ++ ++ +
Sbjct: 531 LEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQE 570
Score = 39.0 bits (91), Expect = 0.002
Identities = 25/108 (23%), Positives = 60/108 (55%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
L Y+ +E ++ R+++ +EE E+ E++ E ++E + + E+ KE+ +
Sbjct: 473 KELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELE 532
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
EK +K + E+ ++ KEK + ++ K++ ++ + + +E K+ +E R
Sbjct: 533 EKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRL 580
Score = 39.0 bits (91), Expect = 0.002
Identities = 20/92 (21%), Positives = 53/92 (57%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E + + + K ++ E E E + + +E+ +EK +E ++ E++ E+ +++ ++
Sbjct: 649 EELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELL 708
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KK + E+ ++ E +K + ++ KK+ +K +K
Sbjct: 709 KKLGEIEQLIEELESRKAELEELKKELEKLEK 740
Score = 38.6 bits (90), Expect = 0.003
Identities = 16/97 (16%), Positives = 50/97 (51%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ R + K + E+ EK EEK ++ + E ++ ++K + + +++ K+ E
Sbjct: 308 EGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELE 367
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++ ++ EK+ +K ++ ++ ++ ++ K++ +
Sbjct: 368 ERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404
Score = 38.6 bits (90), Expect = 0.003
Identities = 20/102 (19%), Positives = 54/102 (52%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
NL+ + + ++ K + + E + + EE+ +EK +E ++ +++ E+ +E
Sbjct: 643 NLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLRE 702
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ ++ KK + ++ E+ + ++ + +E KK+ +K EK +
Sbjct: 703 ELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALEL 744
Score = 38.6 bits (90), Expect = 0.003
Identities = 13/91 (14%), Positives = 54/91 (59%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+ + + + + + ++E E EE E ++++++ E+ K + + + E + K +++E
Sbjct: 216 KKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEE 275
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ ++ ++ +E+ ++ ++ +++ +E +++
Sbjct: 276 LRELERLLEELEEKIERLEELEREIEELEEE 306
Score = 38.2 bits (89), Expect = 0.004
Identities = 20/95 (21%), Positives = 53/95 (55%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ ER + ++ + ++ E E EE ++E + E+ +E +K K E++ +K ++K
Sbjct: 278 ELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEK 337
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K + + ++ +E+ + K +++ KE +++ +E
Sbjct: 338 LEKLESELEELAEEKNELAKLLEERLKELEERLEE 372
Score = 37.8 bits (88), Expect = 0.005
Identities = 15/92 (16%), Positives = 49/92 (53%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ + R + E + EE+ E ++ ++ ++K ++ +E ++E ++ +++ +
Sbjct: 249 ERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ +E ++ E+ K +++ +K +EK +K
Sbjct: 309 GLRALLEELEELLEKLKSLEERLEKLEEKLEK 340
Score = 37.8 bits (88), Expect = 0.005
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
K ER ++ +R+ + +EE E EE ++ +K K E++ ++ +++
Sbjct: 280 ERLLEELEEKIERLEEL--EREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEK 337
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K + + +E ++K E K EE+ KE +++ ++ EK+ +K R +
Sbjct: 338 LEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLK 385
Score = 37.8 bits (88), Expect = 0.005
Identities = 19/100 (19%), Positives = 51/100 (51%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G + ++ ++ + EE ++ E+K EK + + +E +EK + K E++ K+ ++
Sbjct: 309 GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ ++ +K+ +K + K+ E+ ++ K+E +
Sbjct: 369 RLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI 408
Score = 37.0 bits (86), Expect = 0.009
Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK-KEKKKKKKKK 235
+ER K+ + + K+ E+ E K+ E+ ++ KE+ E ++ +E+ ++ +K+
Sbjct: 359 LEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKE 418
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
E+ +++ E+ +++ +K +E+ + + KE + G
Sbjct: 419 LEELERELEELEEEIKKLEEQINQLESKELMIAELAGAG 457
Score = 37.0 bits (86), Expect = 0.010
Identities = 16/90 (17%), Positives = 51/90 (56%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
EEE KE +K EE ++E+++E+ +++ + +++ + +++K++ ++ K +
Sbjct: 200 DIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLL 259
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + E + K ++++ +E ++ +E +
Sbjct: 260 EIESLELEALKIREEELRELERLLEELEEK 289
Score = 36.3 bits (84), Expect = 0.017
Identities = 16/96 (16%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 177 KKERRKQRRRKRKRKR-KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
++ R + + K+K K ++ + EE + + E + E ++ +++ E + EK + +
Sbjct: 589 EELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAEL 648
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+E + E+ ++K E+ + + +++ ++ + +++ E
Sbjct: 649 EELLQAALEELEEKVEELEAEIRRELQRIENEEQLE 684
Score = 35.9 bits (83), Expect = 0.020
Identities = 17/99 (17%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K R + K EEE E ++ ++ E+K E+ +E ++ E ++ +++ + +
Sbjct: 254 LKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELER-EIEELEEELEGLRA 312
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ ++ +K K +++ +K ++K ++ + + +E
Sbjct: 313 LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351
Score = 35.9 bits (83), Expect = 0.021
Identities = 14/95 (14%), Positives = 54/95 (56%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ E + + K ++ + E+ EE KE+ + ++ KE+ ++ + + ++ ++ ++ +
Sbjct: 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLL 581
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K++ E+ +++ ++ K+K K+ +++ + ++
Sbjct: 582 RTRKEELEELRERLKELKKKLKELEERLSQLEELL 616
Score = 35.9 bits (83), Expect = 0.022
Identities = 16/93 (17%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+ + +K EE + E ++E ++ E +++ +++ ++ E+ +E+ ++ +++ E+ KK
Sbjct: 652 LQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKL 711
Query: 244 EKKKKKEEK--KKEKKKKKKKKEKKKKKDEGRR 274
+ ++ E+ ++ + ++ KKE +K +
Sbjct: 712 GEIEQLIEELESRKAELEELKKELEKLEKALEL 744
Score = 35.5 bits (82), Expect = 0.026
Identities = 17/95 (17%), Positives = 52/95 (54%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E+ + + ++ + + EE KE +++ ++ EK+ EK + K+ ++ ++ K+
Sbjct: 337 KLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKE 396
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E + ++ +EE ++ +K+ ++ + + ++ +E
Sbjct: 397 ELAELSAALEEIQEELEELEKELEELERELEELEE 431
Score = 35.5 bits (82), Expect = 0.028
Identities = 20/100 (20%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK---K 234
+E+ ++ + +R+ ++ E E++ E+K E+ ++ ++E ++ +++ E+ +K + + +
Sbjct: 660 EEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIE 719
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ E +K + E+ KK+ EK ++ + ++ +K K R
Sbjct: 720 ELESRKAELEELKKELEKLEKALELLEELREKLGKAGLRA 759
Score = 35.5 bits (82), Expect = 0.030
Identities = 19/94 (20%), Positives = 54/94 (57%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE + R + +++ E E+E + E ++ K+E +++ +K E E+ ++ K+K +
Sbjct: 494 KEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQ 553
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ K+E ++ ++ ++ K+ ++ + + +K+E
Sbjct: 554 LQQLKEELRQLEDRLQELKELLEELRLLRTRKEE 587
Score = 35.5 bits (82), Expect = 0.033
Identities = 18/100 (18%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEK-KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ + + + K + EE E+ +EK + ++ KE+ ++ + ++ ++ E+ + + +
Sbjct: 525 EALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTR 584
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KE+ ++ +E+ K+ ++K KE +++ + E+ + E
Sbjct: 585 KEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEA 624
Score = 34.7 bits (80), Expect = 0.045
Identities = 16/94 (17%), Positives = 53/94 (56%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ R + + E EE +E+ EEK ++ + ++ ++ KEK + ++ K++ ++ + +
Sbjct: 509 ELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRL 568
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ K+ +E + +K++ ++ +++ K+ ++
Sbjct: 569 QELKELLEELRLLRTRKEELEELRERLKELKKKL 602
Score = 34.7 bits (80), Expect = 0.046
Identities = 17/93 (18%), Positives = 52/93 (55%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ ++ + + +EE EE+ ++ + ++ E+ KEK + ++ KE+ ++ + +
Sbjct: 509 ELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRL 568
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ K+ E+ + +K+E ++ +++ ++ KKK
Sbjct: 569 QELKELLEELRLLRTRKEELEELRERLKELKKK 601
Score = 34.7 bits (80), Expect = 0.049
Identities = 18/97 (18%), Positives = 48/97 (49%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E R+ R ++ K EE +KEE ++ +++ K+ +KK KE ++ + ++ +
Sbjct: 560 ELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + E + ++ E++ E + +K + + ++
Sbjct: 620 ELSEAENELEEAEEELESELEKLNLQAELEELLQAAL 656
Score = 34.7 bits (80), Expect = 0.053
Identities = 20/96 (20%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEE-EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ + K K + ++ +EE + E + ++ KE +E + + +KE+ +E +++ K+
Sbjct: 539 ENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKEL 598
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+K K+ +E+ + EE + + + + E ++ ++E
Sbjct: 599 KKKLKELEERLSQLEELLQSLELSEAENELEEAEEE 634
Score = 34.7 bits (80), Expect = 0.055
Identities = 19/101 (18%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 178 KERRKQRRRKRKRK---RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
KE ++ R R RK + E KE +KK ++ +E+ + ++ + E + + + ++
Sbjct: 572 KELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEA 631
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++E + + ++ + E ++ + ++ +EK ++ + RR
Sbjct: 632 EEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRR 672
Score = 34.0 bits (78), Expect = 0.086
Identities = 15/89 (16%), Positives = 53/89 (59%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
++ + + +++ EE E E + E ++ + +E+ +EK ++ ++ E++ ++ +++ ++
Sbjct: 649 EELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELL 708
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KK + ++ ++ E +K + ++ KK+ +
Sbjct: 709 KKLGEIEQLIEELESRKAELEELKKELEK 737
Score = 34.0 bits (78), Expect = 0.10
Identities = 16/93 (17%), Positives = 47/93 (50%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E R Q ++ + + KEE ++ ++ ++ K+K KE +++ + E+ + + E
Sbjct: 565 EDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEA 624
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ + +E +++ E + ++ + + +E + E
Sbjct: 625 ENELEEAEEELESELEKLNLQAELEELLQAALE 657
Score = 32.8 bits (75), Expect = 0.19
Identities = 19/89 (21%), Positives = 43/89 (48%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ E +Q K + + EEE ++ ++ E+ +K E ++ ++ E +K + ++ KK+
Sbjct: 676 RIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKEL 735
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
EK +K E ++ EK + +
Sbjct: 736 EKLEKALELLEELREKLGKAGLRADILRN 764
Score = 32.4 bits (74), Expect = 0.31
Identities = 21/103 (20%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEK----EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
++ + + R RK+E EE +E KK+ K+ E++ + +E + + E + +
Sbjct: 569 QELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENEL 628
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ +E+ + + EK + E ++ + ++ E+K ++ E R
Sbjct: 629 EEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIR 671
Score = 30.9 bits (70), Expect = 0.75
Identities = 18/95 (18%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK-KKKKKKK 236
+ ++ + ++ R +E +E EE + + ++++ E+ +E+ K+ KKK K+ +++ +
Sbjct: 553 QLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQL 612
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+ + E + + E ++ +++ + + EK + E
Sbjct: 613 EELLQSLELSEAENELEEAEEELESELEKLNLQAE 647
Score = 30.5 bits (69), Expect = 0.96
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KE +E +E +K EK E KE K+ K K ++ + + + + + + +EE
Sbjct: 153 PKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEEL 212
Query: 253 KKEKKKKKKKKEKKK 267
K+ KK ++ ++E+++
Sbjct: 213 KELKKLEEIQEEQEE 227
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/93 (16%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK---KKKEKKKEKKKKKK 233
+ E Q + + + EE E+E E + EK + + ++ + ++ E+K E+ + +
Sbjct: 611 QLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEI 670
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+++ ++ + +E+ ++K E+ ++ +++ ++ ++
Sbjct: 671 RRELQRIENEEQLEEKLEELEQLEEELEQLREE 703
Score = 28.2 bits (63), Expect = 6.6
Identities = 17/100 (17%), Positives = 53/100 (53%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K + RK+ + K E+ + ++ ++ K K +E + + + + E + ++
Sbjct: 151 SKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEE 210
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K+ KK E+ ++++E+++ +++ + +E+ + +E + R
Sbjct: 211 ELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKER 250
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 40.4 bits (95), Expect = 5e-04
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
R+RKK+ E+ +++ KE+K + +K + K KK +K KKK+ K+KKK KK KK
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKK 258
Query: 250 EEKKKEKKKKKKKKEKK 266
KK K K K+
Sbjct: 259 RNNKKNYSDIKDKYAKE 275
Score = 35.8 bits (83), Expect = 0.015
Identities = 31/66 (46%), Positives = 40/66 (60%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E+KK+ +K KKK K+KK K KK K K KK KK KK+E K+KKK KK K+
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKK 258
Query: 265 KKKKKD 270
+ KK+
Sbjct: 259 RNNKKN 264
Score = 32.3 bits (74), Expect = 0.20
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKK--------KKKEKKKKKEEKKKEKKKKKKKK 263
++ KKK +K K+K KEKK K K+ K KK KKKE K++KK KK KK
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKK 258
Query: 264 EKKKKKDE 271
KK
Sbjct: 259 RNNKKNYS 266
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 40.0 bits (94), Expect = 5e-04
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
++ K E+ ++ E K+E+ + +KKE KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 38.1 bits (89), Expect = 0.002
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
K+ + EE EE + K++E + EKK+ KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAA-KEEESAEGEKKESKKKK 196
Score = 37.3 bits (87), Expect = 0.003
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
K + EE E ++++ + EKK+ KKKK
Sbjct: 163 KLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 37.3 bits (87), Expect = 0.003
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
E K K E+ E+ + K+++ + +KK+ KKKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 36.9 bits (86), Expect = 0.004
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 206 EKKKEKKKEK--KKEKKKKEKKKEKKKKKKKKKEKKKKK 242
E K K E+ +E + KE++ + +KKE KKKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 36.9 bits (86), Expect = 0.005
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K K ++ E+ + K+E+ + +KKE KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 36.9 bits (86), Expect = 0.005
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
E ++ K E+ ++ E K++E + +KK+ KKKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 36.5 bits (85), Expect = 0.006
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 202 EKKEEKKKEK--KKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E K+ K E+ +E + KE++ + +KK+ KK+K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 36.2 bits (84), Expect = 0.008
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K K ++ ++ + K+++ + +KKE KKK+
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 36.2 bits (84), Expect = 0.009
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
E K+ + EE E+ + K+++ + EKK+ KKKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 36.2 bits (84), Expect = 0.010
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K+ K ++ ++ E K+++ + +KKE KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 35.8 bits (83), Expect = 0.011
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+ K ++ ++ E KE++ + EKK+ KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 35.4 bits (82), Expect = 0.013
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
K + + ++ E +++E + EKK+ KKK+
Sbjct: 159 WKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 34.2 bits (79), Expect = 0.033
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
E K K ++ +E + K+++ E +K++ KKKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 33.5 bits (77), Expect = 0.059
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K K ++ +E + K++E + +KK+ KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 33.5 bits (77), Expect = 0.069
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEK-KKEKKKKE 223
K +E +E E K+E+ E KKE KKK+
Sbjct: 163 KLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 28.8 bits (65), Expect = 2.3
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K K E+ ++ + ++++ + +KK+ +KKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 28.1 bits (63), Expect = 4.5
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 171 YGYKGGKKERRKQRRRKRKRKRKKEEEEKEE-EKKEEKKKE 210
Y K + + + +EEE E EKKE KKK+
Sbjct: 156 YAEWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 41.2 bits (97), Expect = 5e-04
Identities = 20/82 (24%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEE-KKEEKKKEKKKEKKKEKKKK--EKKKEKKKKKK 233
+ E++KQ R+R +++ EE E + ++ E K ++ E+ E ++K E K+E + +
Sbjct: 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358
Query: 234 KKKEKKKKKKEKKKKKEEKKKE 255
+ +E + + +E + + EE +++
Sbjct: 359 ELEELEAELEELESRLEELEEQ 380
Score = 37.7 bits (88), Expect = 0.005
Identities = 15/102 (14%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 176 GKKERRKQRRR--KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+K+ ++R +R+ + + + E+ E K +E +E + ++K ++ KE+ + + + +
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + + ++ + + ++ EE+ + + K + E +
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
Score = 37.3 bits (87), Expect = 0.008
Identities = 13/93 (13%), Positives = 48/93 (51%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ + + + +E EEK EE + E + +++ ++ +K+ E + +++K+
Sbjct: 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+++ +++ EE + + ++ + K ++ ++
Sbjct: 306 ILRERLANLERQLEELEAQLEELESKLDELAEE 338
Score = 37.0 bits (86), Expect = 0.009
Identities = 12/100 (12%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ E + +K E E++K+ +++ E++ E+ + + ++ + K +
Sbjct: 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
Query: 236 KEKKKKKKE----KKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+E + +++ K++ + + + ++ + + +E + + +E
Sbjct: 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
Score = 35.0 bits (81), Expect = 0.038
Identities = 16/103 (15%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 184 RRRKRKRKRKKEEEEKE-----------EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
R + + + EE +KE E++K+ ++ +++ ++ + + +E + K
Sbjct: 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ E+ + +EK ++ +E+ + + + ++ E + ++ E R
Sbjct: 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
Score = 34.3 bits (79), Expect = 0.074
Identities = 18/88 (20%), Positives = 45/88 (51%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ K EE + EEK EE K+E + + + ++ + + +E + + ++ +E+ + + K
Sbjct: 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ E + + ++ E + ++ E RR
Sbjct: 389 AQLELQIASLNNEIERLEARLERLEDRR 416
Score = 32.0 bits (73), Expect = 0.36
Identities = 14/84 (16%), Positives = 39/84 (46%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ + + E EEK EE KEE + + + ++ E + +E + ++ +++ + +
Sbjct: 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKE 264
K + + + E ++ + + E
Sbjct: 387 KVAQLELQIASLNNEIERLEARLE 410
Score = 31.2 bits (71), Expect = 0.62
Identities = 18/91 (19%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKK-----KEKKKEKKKKEKKKEKKKKKKKKKEK 238
R+ + +R+ E+ E+ +E K E ++ + + ++ ++ +E ++E K+ +++ +E
Sbjct: 199 ERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEEL 258
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ +E ++K EE + E + +++ E+ +K+
Sbjct: 259 TAELQELEEKLEELRLEVSELEEEIEELQKE 289
Score = 31.2 bits (71), Expect = 0.63
Identities = 13/93 (13%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 178 KERRKQRRRKRKRKRKKEEEE-----KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
ERR + ++ + ++ E +E E+ E+ + + + E+ E+ + +
Sbjct: 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
++ ++ ++ E K+ + ++ E+ ++K + +
Sbjct: 896 LEELSEELRELESKRSELRRELEELREKLAQLE 928
Score = 27.7 bits (62), Expect = 9.7
Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEE-EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
G + +R+R+ ++ EE+ EE E+K + ++ E +KE ++ E++ E+ +K+ +
Sbjct: 663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE 722
Query: 235 KKEKKKKKKEKKKKKEEKKKEK 256
+ ++ K + E + E+
Sbjct: 723 ELSRQISALRKDLARLEAEVEQ 744
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 40.8 bits (96), Expect = 5e-04
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 19/113 (16%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
G +KE ++ K + RK+ EEE EE +K + E K + + +
Sbjct: 500 GEEKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLA 559
Query: 235 KKE-------------------KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
KKKK E K+KK K + KK+K
Sbjct: 560 HMGLPVPAEEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKNKVLPEAKKRK 612
Score = 34.2 bits (79), Expect = 0.066
Identities = 22/96 (22%), Positives = 31/96 (32%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G K + + + EE K E E K KKK+ E K KK
Sbjct: 543 GGKTSLLELKAQIVVLAHMGLPVPAEEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKN 602
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + KK K K +E + + + E
Sbjct: 603 KVLPEAKKRKLKLGDEVEVITGEPGAVVKIIAGILE 638
Score = 32.3 bits (74), Expect = 0.28
Identities = 16/87 (18%), Positives = 26/87 (29%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+ E K E + + E+ K + E K KKKK
Sbjct: 526 EVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPVPAEEAKVEAVDEVKFLKKKK 585
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+ + KK K + +K+K
Sbjct: 586 GILDAGAFESTLKDKKNKVLPEAKKRK 612
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 40.7 bits (96), Expect = 5e-04
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
EE EEE +EE ++E K+ + +++ + +KK +KK KK +K K ++ ++ E + E+
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Score = 39.6 bits (93), Expect = 0.001
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
EEE +EE ++E K+ E +KE + +KK +KK KK KK K E+ ++ + + EE
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Score = 37.6 bits (88), Expect = 0.005
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
EEE EE +EE K+ + +++ E +KK +K+ KK KK K+++ +E + + E+
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Score = 36.9 bits (86), Expect = 0.010
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
EE+ E+ +E+ KE + EK+ E +K+ +KK KK KK K +E ++ + + ++
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Score = 36.5 bits (85), Expect = 0.011
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+E EE+ E+ EE+ KE + EK+ + +K+ ++K KK KK + ++ E+ + E ++
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Query: 254 KEKKKKKK 261
E + +
Sbjct: 124 PEPPLRPR 131
Score = 36.5 bits (85), Expect = 0.011
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+E ++E ++E K+ E +KE + +KK EKK KK KK K EE E+ + + +E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Score = 35.7 bits (83), Expect = 0.021
Identities = 15/58 (25%), Positives = 35/58 (60%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+ +E+ ++E K+ + +K+ + EKK +K+ KK ++ K E+ ++ E + ++ E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPE 125
Score = 34.2 bits (79), Expect = 0.063
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK-KKEKKKKKEEKKKEKKKKKKKKEK 265
E++ ++ E++ KE + EK+ + +KK +KK KK KK K+E+ ++ + + E+
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Score = 33.4 bits (77), Expect = 0.10
Identities = 14/65 (21%), Positives = 32/65 (49%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E + + + K + E+E E +K+ +K+ KK KK K ++ +E + + ++ E
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEP 126
Query: 239 KKKKK 243
+ +
Sbjct: 127 PLRPR 131
Score = 33.4 bits (77), Expect = 0.12
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+ + + + + +E E E+E E +KK +K+ KK KK + ++ ++
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEE 115
Score = 33.4 bits (77), Expect = 0.12
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E ++ R + + + K+ E EKE + E+K EKK +K +K K E+ ++ + + +E
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Score = 32.6 bits (75), Expect = 0.21
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ R++ EEE +E + E++ E +K+ ++K KK KK K ++ ++ + + +E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Score = 32.6 bits (75), Expect = 0.21
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E++ +++ ++E K+ + EK+ + EKK +KK KK +K K ++
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEE 115
Score = 29.5 bits (67), Expect = 1.8
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+ R+ +EE ++ E +KE + EKK +KK KK +K K+++ ++ E + ++ E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEP 126
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 41.1 bits (97), Expect = 5e-04
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK--KKKKEKKKK 248
+ E + + E + EK+ EK +K+ + EKK + K
Sbjct: 788 EPPVEVTAVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAP 847
Query: 249 KEEKKKEKKKKKKKKEKKKK 268
+E +KEK+K + + K K
Sbjct: 848 EEVVEKEKEKLAEYQVKLAK 867
Score = 34.1 bits (79), Expect = 0.071
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 197 EEKEEEKKEEKKKEKKKEK-KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ E + EK+ EK +KE + EKK + K E+ +K+++K + + K
Sbjct: 807 AGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLA 866
Query: 256 KKKKKKKKEKK 266
K +++ K
Sbjct: 867 KLEERLAVLKA 877
Score = 33.8 bits (78), Expect = 0.100
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
EE E + E + +K+ +K +KE + +K+ +
Sbjct: 785 DPEEPPVEVTAVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVA 844
Query: 253 KKEKKKKKKKKEKKKK 268
K ++ +K+KEK +
Sbjct: 845 KAPEEVVEKEKEKLAE 860
Score = 33.0 bits (76), Expect = 0.19
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ + E+E E+ +KE + EKK + K ++ +K+K+K + + K K +++
Sbjct: 815 ELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLAV 874
Query: 251 EKK 253
K
Sbjct: 875 LKA 877
Score = 31.1 bits (71), Expect = 0.66
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ EE E E + + +K+ EK +K+ ++ +KK +
Sbjct: 782 LSPDPEEPPVEVTAVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEG 841
Query: 255 -EKKKKKKKKEKKKKKDEGRR 274
K ++ EK+K+K +
Sbjct: 842 FVAKAPEEVVEKEKEKLAEYQ 862
Score = 30.7 bits (70), Expect = 1.0
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
E + E++ E+ +KE + +KK + K ++ +K+KEK + + K K EE+
Sbjct: 812 LAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEER 871
Query: 253 KKE 255
Sbjct: 872 LAV 874
Score = 29.9 bits (68), Expect = 1.6
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK--- 253
E + +E + E + + EK+ +K EK+ + EKK
Sbjct: 780 EILSPDPEEPPVEVTAVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSN 839
Query: 254 ----KEKKKKKKKKEKKKKKDE 271
+ ++ +KEK+K +
Sbjct: 840 EGFVAKAPEEVVEKEKEKLAEY 861
Score = 29.5 bits (67), Expect = 2.4
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 12/88 (13%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK------- 247
E + E+ + + + + +KE +K +KE +
Sbjct: 780 EILSPDPEEPPVEVTAVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSN 839
Query: 248 -----KKEEKKKEKKKKKKKKEKKKKKD 270
K E+ EK+K+K + + K
Sbjct: 840 EGFVAKAPEEVVEKEKEKLAEYQVKLAK 867
Score = 29.1 bits (66), Expect = 2.9
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKK------EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ R K K E+E EKK K E+ EK+KEK + + K K +++
Sbjct: 814 AELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLA 873
Query: 236 KEKK 239
K
Sbjct: 874 VLKA 877
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 40.9 bits (96), Expect = 6e-04
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEK--KKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ R +K + EK EE KKE++ ++ ++E +E+ + + E
Sbjct: 865 NQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEEGLNEEELAFYDDLALNGGKLPENGTE 924
Query: 245 KKKK--KEEKKKEKKKKKKKKEKKKKK 269
+K KE+ +EK K K +++ +
Sbjct: 925 LVEKLAKEKSLREKNKDDWKAKEEVEA 951
Score = 38.9 bits (91), Expect = 0.002
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK---EKKKEKKKEKKKKEKKKEKKKKKKK 234
E Q R K+ +K EE KKEE+ K E++ ++E + K +
Sbjct: 861 IEAINQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEEGLNEEELAFYDDLALNGGKLPE 920
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+ +K K+K EK K+ K K++ E K
Sbjct: 921 NGTELVEKLAKEKSLREKNKDDWKAKEEVEAK 952
Score = 37.8 bits (88), Expect = 0.005
Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 15/113 (13%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK--------KKEKKKKEKKKEKK 229
+ K+ ++K+K E E + KK EK KKE++ K+ +E+
Sbjct: 840 ERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEEG 899
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKK-------KEKKKKKKKKEKKKKKDEGRRR 275
+++ K E KEK ++K K+ K K+E +
Sbjct: 900 LNEEELAFYDDLALNGGKLPENGTELVEKLAKEKSLREKNKDDWKAKEEVEAK 952
Score = 37.8 bits (88), Expect = 0.005
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEK-EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K + ++ + KE E ++KK ++ + + + KK +K ++ K
Sbjct: 827 DKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAK 886
Query: 236 KEKKKKKK-EKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KE++ K+ E++ EE+ K +
Sbjct: 887 KEEEFKQFAEEEGLNEEELAFYDDLALNGGKLPENGT 923
Score = 34.7 bits (80), Expect = 0.050
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 164 GCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
+ ++ + +K + K+ E+E +EE K E
Sbjct: 862 EAINQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEEGLNEEE-LAFYDDLALNGGKLPE 920
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E +K K+K ++K K+ K KEE +
Sbjct: 921 NGTELVEKLAKEKSLREKNKDDWKAKEEVEA 951
Score = 32.0 bits (73), Expect = 0.36
Identities = 15/84 (17%), Positives = 39/84 (46%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ + E ++ E+ ++ E ++KKK ++ + + + KK +K ++
Sbjct: 823 QTFNDKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELY 882
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKK 268
KKEE+ K+ +++ E++
Sbjct: 883 ILAKKEEEFKQFAEEEGLNEEELA 906
Score = 29.3 bits (66), Expect = 3.0
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKE------EEEKEEEKKEEKKKEKKKEKKKEKKK 221
+Y K R+ K K K + E E K+E + E +
Sbjct: 768 EKDYQSKYLDLIDNLNDAREIKDKESKAIDLDDIDFELELIGKQEINIDYILELLQTFND 827
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK-KEKKKKKKKKEKKKKKDE 271
K E K+ ++ K+ + ++KKK ++ E + + K+ +
Sbjct: 828 KNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKL 878
Score = 29.3 bits (66), Expect = 3.0
Identities = 13/83 (15%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ + + KE E+ ++ E ++KKK ++ + + KK +K ++
Sbjct: 823 QTFNDKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQY-RAKKLDTAEKLEEL 881
Query: 241 KKKEKKKKKEEKKKEKKKKKKKK 263
KK+++ ++ E++ +++
Sbjct: 882 YILAKKEEEFKQFAEEEGLNEEE 904
Score = 28.9 bits (65), Expect = 3.9
Identities = 12/72 (16%), Positives = 33/72 (45%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+ +K + K+ ++ ++ E ++KKK E+ + + + K+ EK ++
Sbjct: 823 QTFNDKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELY 882
Query: 262 KKEKKKKKDEGR 273
KK+++ +
Sbjct: 883 ILAKKEEEFKQF 894
Score = 28.5 bits (64), Expect = 4.3
Identities = 14/68 (20%), Positives = 24/68 (35%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+K E E + + KE + K + + KK+ K K ++K K
Sbjct: 528 SRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLKDEKKDLIKRF 587
Query: 252 KKKEKKKK 259
K K+
Sbjct: 588 KLKDDPLD 595
Score = 28.5 bits (64), Expect = 4.6
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKK-EKKKKEKKKEKKKKK 232
K+E EE +E +E + +K KKK + + + +
Sbjct: 461 SIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIR 503
Score = 28.1 bits (63), Expect = 5.6
Identities = 13/64 (20%), Positives = 22/64 (34%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
E + E K+ + K + + + KK+ K K E+K K+ K K
Sbjct: 532 AVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLKDEKKDLIKRFKLKD 591
Query: 263 KEKK 266
Sbjct: 592 DPLD 595
Score = 27.8 bits (62), Expect = 7.4
Identities = 13/79 (16%), Positives = 37/79 (46%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ E K+ ++ K+ + +KKK ++ + + + +K ++ ++
Sbjct: 826 NDKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILA 885
Query: 253 KKEKKKKKKKKEKKKKKDE 271
KKE++ K+ +E+ ++E
Sbjct: 886 KKEEEFKQFAEEEGLNEEE 904
Score = 27.4 bits (61), Expect = 9.9
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
R EE KEE ++ + E+ +E + +K KKK K +
Sbjct: 446 PVYYENRVELELIEESIKEEAEELD-------ERIEEITEDILEKIKKKTKNLEFLAMLA 498
Query: 242 KK 243
+
Sbjct: 499 VR 500
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 39.5 bits (93), Expect = 7e-04
Identities = 21/79 (26%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
RK + E+ K E E++ +K +E+K+E +K+ + E K + +K+E+++++ E+K+
Sbjct: 113 RKALQAEQGKSEL---EQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHA 169
Query: 250 EEKKKEKKKKKKKKEKKKK 268
+E KK+ ++ K + ++
Sbjct: 170 DEIAFLKKQNQQLKSQLEQ 188
Score = 38.7 bits (91), Expect = 0.001
Identities = 18/73 (24%), Positives = 46/73 (63%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
++ + E+ K E ++E KK +++KE+ +++ + + K E +K++E++++ EEK+ +
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEI 172
Query: 259 KKKKKEKKKKKDE 271
KK+ ++ K +
Sbjct: 173 AFLKKQNQQLKSQ 185
Score = 32.6 bits (75), Expect = 0.12
Identities = 16/72 (22%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK-K 235
+ E+ K + +K ++E+EE E+ E + K + EK++E++++ ++K + K
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLK 176
Query: 236 KEKKKKKKEKKK 247
K+ ++ K + ++
Sbjct: 177 KQNQQLKSQLEQ 188
Score = 29.9 bits (68), Expect = 0.93
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK--KEKKKEKKKKEKKKEKKKKKKKKKEK 238
RK + ++ + ++E +K EE+KEE +K + K + +K+E+++ + ++K+ E
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEI 172
Query: 239 KKKKKEKKKKKEEKKKE 255
KK+ ++ K + ++
Sbjct: 173 AFLKKQNQQLKSQLEQI 189
Score = 29.1 bits (66), Expect = 2.1
Identities = 16/68 (23%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEE--KKKEKKKEKKKEKKKKEKKKEKKKKKK 233
GK E ++ ++ + K + E+ E E K E +K+E+++ + +EK+ ++ KK+ +
Sbjct: 121 GKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQ 180
Query: 234 KKKEKKKK 241
+ K + ++
Sbjct: 181 QLKSQLEQ 188
Score = 28.7 bits (65), Expect = 2.1
Identities = 13/61 (21%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E K+ KR + + + E EK+EE++++ ++++ ++ KK+ ++ K + ++
Sbjct: 131 KLEEEKEELEKRVAELEAKLEA--IEKREEEERQIEEKRHADEIAFLKKQNQQLKSQLEQ 188
Query: 237 E 237
Sbjct: 189 I 189
Score = 28.7 bits (65), Expect = 2.2
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ K E +++ K+ +++KEE +K + + K E +K++E R
Sbjct: 120 QGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEER 161
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 38.8 bits (91), Expect = 8e-04
Identities = 18/89 (20%), Positives = 49/89 (55%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+R+ K + E E K+E + + E++ E+ +++ + ++ KK+ ++ ++ K +
Sbjct: 37 ERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEA 96
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+++ E+ KE + + + EK++ +E R
Sbjct: 97 EEELERIKEAAEAEIEAEKERALEELRAE 125
Score = 31.1 bits (71), Expect = 0.31
Identities = 11/75 (14%), Positives = 42/75 (56%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+E + + + + E+ KE+ + + +++ ++ +++ + ++ KKE ++ EE K E
Sbjct: 36 DERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAE 95
Query: 256 KKKKKKKKEKKKKKD 270
+++ ++ ++ + +
Sbjct: 96 AEEELERIKEAAEAE 110
Score = 29.6 bits (67), Expect = 0.96
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKE-EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+E R+Q ++ +K+ E+ EE K E E++ E+ KE + + + EK++ ++ + +
Sbjct: 68 EEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVA 127
Query: 237 EKKKKKKEKKKKKEEKKKEKKK 258
E EK K+ + +K
Sbjct: 128 ELAVAIAEKLLGKKVDEAAQKD 149
Score = 28.8 bits (65), Expect = 1.9
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK-EKKKEKKKKEKKKEKKKKKKK--- 234
ER K+ + + ++E EE E+ E ++ KK+ E+ E+ K E ++E ++ K+
Sbjct: 50 ERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEA 109
Query: 235 --KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ EK++ +E + + E +K K+ + +
Sbjct: 110 EIEAEKERALEELRAEVAELAVAIAEKLLGKKVDEAAQK 148
Score = 27.3 bits (61), Expect = 5.5
Identities = 18/94 (19%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK-EKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ ++ R + ++ ++E E+ +E K + E++ E+ KE + E + EK++ +
Sbjct: 64 EQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALE--- 120
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E + + E EK KK + ++
Sbjct: 121 ELRAEVAELAVAIAEKLLGKKVDEAAQKDLIDAF 154
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 40.2 bits (94), Expect = 8e-04
Identities = 25/99 (25%), Positives = 43/99 (43%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
GK+ K + + K + +K ++ +E EK + K K K+ KK
Sbjct: 158 ANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNI 217
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
KKK KEKK+KKE + K++ +++ K+
Sbjct: 218 MSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILE 256
Score = 36.0 bits (83), Expect = 0.016
Identities = 20/79 (25%), Positives = 44/79 (55%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+K+ KE++EK+E + K+E ++E K E + + + +++ + K ++
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERS 281
Query: 249 KEEKKKEKKKKKKKKEKKK 267
E++ E+K+K+K+K KK
Sbjct: 282 DSEEETEEKEKEKRKRLKK 300
Score = 34.8 bits (80), Expect = 0.042
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+K+ +++K+++E E KEE ++E K + + E + + E + K +
Sbjct: 223 KKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESA---EPTGLDEDEDEDEPKPSGE 279
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ EE+ +EK+K+K+K+ KK +DE
Sbjct: 280 RSDSEEETEEKEKEKRKRLKKMMEDE 305
Score = 34.0 bits (78), Expect = 0.066
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+ K +K ++ KE EK + + + K+ +K KKK ++KKEKK+
Sbjct: 177 KVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEAS 236
Query: 261 KKKEKKKKKDEGRRR 275
+ K++ ++E +R
Sbjct: 237 ESTVKEESEEESGKR 251
Score = 34.0 bits (78), Expect = 0.067
Identities = 21/90 (23%), Positives = 51/90 (56%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
++K K K++K+E + K+E +++ K++ E + E + + + + + ++ +
Sbjct: 223 KKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSD 282
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+++ EEK+KEK+K+ KK + + +DE
Sbjct: 283 SEEETEEKEKEKRKRLKKMMEDEDEDEEME 312
Score = 34.0 bits (78), Expect = 0.079
Identities = 18/93 (19%), Positives = 39/93 (41%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK + + ++ K + K+ KK +KK KEKK++K+ + K
Sbjct: 182 KKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVK 241
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E+ +++ K+ E + + + E + +
Sbjct: 242 EESEEESGKRDVILEDESAEPTGLDEDEDEDEP 274
Score = 32.5 bits (74), Expect = 0.24
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ K+ + KR E++ E + E + E K ++ + ++E ++K+K+K+
Sbjct: 236 SESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKR 295
Query: 237 EKKKK------------------KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ KK +E++ ++ E KK+++K+E D GRRR
Sbjct: 296 KRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRR 352
Score = 32.1 bits (73), Expect = 0.28
Identities = 19/76 (25%), Positives = 44/76 (57%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K++ ++++EKKE + K+E ++E K++ E + + ++ + + E K E
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERS 281
Query: 253 KKEKKKKKKKKEKKKK 268
E++ ++K+KEK+K+
Sbjct: 282 DSEEETEEKEKEKRKR 297
Score = 31.3 bits (71), Expect = 0.48
Identities = 18/81 (22%), Positives = 30/81 (37%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K K K K + K K KK + ++ +K + + K K+
Sbjct: 153 ALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPP 212
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
+K KKK K+KK+ +
Sbjct: 213 KKSNIMSSFFKKKTKEKKEKK 233
Score = 30.6 bits (69), Expect = 0.99
Identities = 19/93 (20%), Positives = 40/93 (43%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K +K + ++ +K E + + K+ KK K+K KEKK+KK+ +
Sbjct: 178 VKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASE 237
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K++ E++ K + E + + + +
Sbjct: 238 STVKEESEEESGKRDVILEDESAEPTGLDEDED 270
Score = 28.6 bits (64), Expect = 3.7
Identities = 22/105 (20%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE------- 227
G ++ + + + EEE +E+EK++ K+ +K E + E ++ E E
Sbjct: 264 GLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEE 323
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
++ + KK+++KE+ + + + +++ K+K K +EG
Sbjct: 324 SEEPEPPPLPKKEEEKEEVTVSPDGGRRRGRRRVMKKKTFKDEEG 368
Score = 28.3 bits (63), Expect = 4.8
Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 40/131 (30%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKK-----------EEKKKEKKKEKKKEKKKKEKKKE 227
E ++ + KRKR +K E+E E+E+ E ++ E KKE++K+E
Sbjct: 286 ETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVS 345
Query: 228 KKKKKKKKKEKKKKKK-----------------------------EKKKKKEEKKKEKKK 258
+++ + + KKK K K K
Sbjct: 346 PDGGRRRGRRRVMKKKTFKDEEGYLVTKKVYEWESFSEDEAEPPPTKPKPKVSTPAVPAA 405
Query: 259 KKKKKEKKKKK 269
KK K KKKK
Sbjct: 406 AKKPKAPKKKK 416
Score = 27.9 bits (62), Expect = 5.8
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEE------EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
RR +RR +K+ K EE + E E E + E K K K
Sbjct: 345 SPDGGRRRGRRRVMKKKTFKDEEGYLVTKKVYEWESFSEDEAEPPPTKPKPKVSTPAVPA 404
Query: 228 KKKKKKKKKEKK 239
KK K K+KK
Sbjct: 405 AAKKPKAPKKKK 416
Score = 27.5 bits (61), Expect = 9.6
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKK-----KEKKKEKKKKKKKKKEKKKKKKEKKK 247
KE ++ E K K K +K +KK ++KK+KK+ E K++ +++
Sbjct: 188 SKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEE 247
Query: 248 KKEEKKKEKKKKKKKKEKKKKKDE 271
+ + + + + +DE
Sbjct: 248 SGKRDVILEDESAEPTGLDEDEDE 271
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 38.0 bits (89), Expect = 9e-04
Identities = 18/61 (29%), Positives = 46/61 (75%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K +K+ ++++KKK++K+ KK++ + ++++ KE+ +K++ +K ++KK K+++K+K+
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKE 129
Query: 269 K 269
K
Sbjct: 130 K 130
Score = 37.6 bits (88), Expect = 0.001
Identities = 22/62 (35%), Positives = 44/62 (70%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KK K +K+ ++KEKKK++K+ KK++ + ++E+ K++ EK+K +K ++KK K++
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Query: 268 KK 269
+K
Sbjct: 125 QK 126
Score = 37.6 bits (88), Expect = 0.001
Identities = 21/59 (35%), Positives = 43/59 (72%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K EK+ ++KEKKK++K+ KK+ + ++++ K++ +KEK+ +K +KK K+++K+K
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 36.1 bits (84), Expect = 0.004
Identities = 23/66 (34%), Positives = 44/66 (66%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
KK K EK+ ++KEKKKK K+ KK++ + +++ K+ +K+K +K +KK K++
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Query: 263 KEKKKK 268
+++K+K
Sbjct: 125 QKEKEK 130
Score = 36.1 bits (84), Expect = 0.004
Identities = 19/61 (31%), Positives = 39/61 (63%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K +KE ++E+KK+ K+ KK+ +++ K+ +K+K+ +K ++KK K ++K+K
Sbjct: 69 AKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Query: 250 E 250
E
Sbjct: 129 E 129
Score = 35.7 bits (83), Expect = 0.006
Identities = 17/59 (28%), Positives = 40/59 (67%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K +++ +EK+K+KK+K+ KK + + +++ KE +KEK+ +K +++K K++ + +
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 35.7 bits (83), Expect = 0.007
Identities = 24/77 (31%), Positives = 47/77 (61%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R K+ + EKE +++EKKK++K+ KK + ++E+ K++ +K+++
Sbjct: 54 GCHLPWRVIDLKKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRT 113
Query: 240 KKKKEKKKKKEEKKKEK 256
+K +EKK K+ +K+KEK
Sbjct: 114 RKNREKKFKRRQKEKEK 130
Score = 31.5 bits (72), Expect = 0.20
Identities = 17/61 (27%), Positives = 38/61 (62%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K ++ R K K+K++K +K +++ K+ +KEK+ ++ +++K K+++K+KE
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKE 129
Query: 238 K 238
K
Sbjct: 130 K 130
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 40.2 bits (95), Expect = 9e-04
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ EE + +E+++EE+ + E + EK E K K K+ KK +K ++KK E +
Sbjct: 188 ELEELDDDEDEEEEEDENDDSLAADESELPEKVLE--KFKALAKQYKKLRKAQEKKVEGR 245
Query: 253 KKEKKKKKKKKEK 265
+ KK K +EK
Sbjct: 246 LAQHKKYAKLREK 258
Score = 38.6 bits (91), Expect = 0.003
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK-KEKKKKKKKKKEKKKKKKEKKKKKEEK 252
E EE +E ++E++ E E + EK +K K K+ KK K ++K+ +
Sbjct: 184 HVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVE 243
Query: 253 KKEKKKKKKKKEKKKKKDE 271
+ + KK K ++K K+E
Sbjct: 244 GRLAQHKKYAKLREKLKEE 262
Score = 29.4 bits (67), Expect = 2.2
Identities = 16/94 (17%), Positives = 38/94 (40%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+R + R+ + + EE E ++ E +++E+ + + E
Sbjct: 156 YDRLENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K EK K ++ K+ +K ++KK + +
Sbjct: 216 LPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQH 249
Score = 29.0 bits (66), Expect = 3.1
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK---KKKKKEKKKKKEE 251
E++ + +E ++ +E+++ E + + EK K K K+ KK
Sbjct: 176 PNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLR 235
Query: 252 KKKEKKKKKKKKEKKKKKDE 271
K +EKK + + + KK
Sbjct: 236 KAQEKKVEGRLAQHKKYAKL 255
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 40.4 bits (94), Expect = 0.001
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ R+ +R KK + KK+ KK K K KK KK KKK KK KK
Sbjct: 971 AEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAK-KAAAKKAAAKKAAAKKKVAKKAPAKK 1029
Query: 241 KKKEKKKKKEEKKKEKKKKKKKK 263
++ KK KK +K +K
Sbjct: 1030 VARKPAAKKAAKKPARKAAGRKA 1052
Score = 37.3 bits (86), Expect = 0.009
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK--EKKKEKKKKEKKKEKK 229
G + + RK RR K+ K KK KK KK KK KK KK+
Sbjct: 966 GIEKVAEAVRKTVRRSVKKAAATRAAMK---KKVAKKAPAKKAAAKKAAAKKAAAKKKVA 1022
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
KK KK +K +K KK +K +K
Sbjct: 1023 KKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052
Score = 36.9 bits (85), Expect = 0.010
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK--KKEEK 252
E+ + K + +K + KKK KK KK KK KK KKK KK
Sbjct: 968 EKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPA 1027
Query: 253 KKEKKKKKKKKEKKK--KKDEGRR 274
KK +K KK KK +K GR+
Sbjct: 1028 KKVARKPAAKKAAKKPARKAAGRK 1051
Score = 36.9 bits (85), Expect = 0.011
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
++ ++ ++ + KKK K K KK KK KK KKK KK +
Sbjct: 971 AEAVRKTVRRSVKKAAATRAAMKKKVAK--KAPAKKAAAKKAAAKKAAAKKKVAKKAPAK 1028
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKK 268
K +K KK KK +K +K
Sbjct: 1029 KVARKPAAKKAAKKPARKAAGRKA 1052
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 38.9 bits (91), Expect = 0.001
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
E+K K+KE+ E++KE KK +K + KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 38.1 bits (89), Expect = 0.002
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
R+ K+K + EE++E KK +K + KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 38.1 bits (89), Expect = 0.002
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
E K+ ++KEE E++KE KK +K + KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 35.8 bits (83), Expect = 0.010
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+K+ ++KEE EE+K E K+ +K + KKKK
Sbjct: 159 RKDAKQKEEFAAEERK-EALAAAAKKSATPQKVETKKKK 196
Score = 35.4 bits (82), Expect = 0.016
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
RK ++K + ++ +E K+ +K + KKK+
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 35.1 bits (81), Expect = 0.018
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
RK K++EE E+++E K+ +K + KKK+
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 34.3 bits (79), Expect = 0.035
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEK-KKEKKKKK 260
E+K K+K++ +E+K+ KK K E KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 33.1 bits (76), Expect = 0.091
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
E+K K+KE+ +++KE KK ++ + KKK+
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 32.0 bits (73), Expect = 0.19
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+K+ K+K++ E++K+ KK ++ + KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 31.6 bits (72), Expect = 0.26
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K K+K++ E++K+ +K +K E KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 31.2 bits (71), Expect = 0.35
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E+K K+K+E E++K+ KK + K E KKK+
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQ---KVETKKKK 196
Score = 30.8 bits (70), Expect = 0.58
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+K K++++ +E+K+ K+ +K + KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 29.3 bits (66), Expect = 1.9
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK 215
L+ G +++ KQ+ +RK+ ++ +K E KK+K
Sbjct: 150 LQAGLWYAERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.1 bits (63), Expect = 4.4
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+K K++++ EE+K+ KK +K +
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 39.5 bits (93), Expect = 0.001
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK-KEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
++ + EE K + K+ + K+ K +E+K+ E KK
Sbjct: 10 AKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKK 69
Query: 241 K-KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ + + E + ++ EK GRR
Sbjct: 70 EVEDAITELTPELEAAGLWERLAFEKIDVTLPGRR 104
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 39.5 bits (93), Expect = 0.001
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E K R R+ + ++E+ +E K K E + K K+ + K KK +
Sbjct: 447 KAEEAKARFEARQARLEREKAAREARHK--KAAEARAAKDKDAVAAALARVKAKKAAATQ 504
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + + +K + + ++ +K
Sbjct: 505 PIVIKAGARPDNSAVIAAREARKAQARARQAEKQA 539
Score = 38.8 bits (91), Expect = 0.002
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 186 RKRKRKRKKEEEEKE--EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
R ++++KK EE K E ++ + E++K ++ + KK + K K + K
Sbjct: 439 RAIEQEKKKAEEAKARFEARQA--RLEREKAAREARHKKAAEARAAKDKDAVAAALARVK 496
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK + K + E R+
Sbjct: 497 AKKAAATQPIVIKAGARPDNSAVIAAREARKA 528
Score = 38.0 bits (89), Expect = 0.004
Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 16/115 (13%)
Query: 173 YKGGKKERRKQRRRKRK----RKR---KKEEEEKEEEKKEEKKKEKKKEKKKEKKK---- 221
Y+ K E R + K+K + R ++ E+E+ +E + K+ + + + K
Sbjct: 431 YRQAKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAA 490
Query: 222 -----KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K KK + K + +E +K + + ++ +K+ D
Sbjct: 491 ALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADP 545
Score = 28.8 bits (65), Expect = 3.7
Identities = 10/86 (11%), Positives = 32/86 (37%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+++ ++ R K+ + + +++ + K KK + K + +
Sbjct: 464 REKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAR 523
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKK 262
E +K + ++ +++ KK
Sbjct: 524 EARKAQARARQAEKQAAAAADPKKAA 549
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 39.7 bits (93), Expect = 0.001
Identities = 20/93 (21%), Positives = 52/93 (55%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ + Q +R +++ K E++ E +K++ +++ ++ E ++ + KK++
Sbjct: 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD 892
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E + + +E ++K EE + + +KK+K+ + K K
Sbjct: 893 ELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
Score = 38.5 bits (90), Expect = 0.004
Identities = 20/104 (19%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 177 KKERRKQRRR----KRKRKRKKEEEEKEEEKKEEKK------KEKKKEKKKEKKKKEKKK 226
++E + R ++K R E+E E++ +E + KE+ K +KE + KK
Sbjct: 804 EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E+ +++ ++ E + E + +K++++ + + ++ ++K ++
Sbjct: 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
Score = 37.7 bits (88), Expect = 0.006
Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK-KEKKKEKKKKKKKK 235
K K+ +K + EEE +E E + + + KKE+ + + + +E ++K ++
Sbjct: 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ + +KK+++ + + K + +++ + E K +DE
Sbjct: 909 EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
Score = 36.2 bits (84), Expect = 0.018
Identities = 18/87 (20%), Positives = 45/87 (51%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ + RR + + +E K E +KE ++ +++E+K KE+ +E ++ +++
Sbjct: 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+ K + K+ E + +E ++ K E+
Sbjct: 754 ENVKSELKELEARIEELEEDLHKLEEA 780
Score = 36.2 bits (84), Expect = 0.018
Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEE-EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ + +++R K + K E+E E K+E+ +E+ +E + + E + KK++ +
Sbjct: 834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
E + ++ E+K ++ E + EKK+K+ + K K
Sbjct: 894 LEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
Score = 35.4 bits (82), Expect = 0.034
Identities = 19/72 (26%), Positives = 43/72 (59%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
R+K K + EE E+ E+ + EK+++ ++ ++++EK + + K+K+E + +
Sbjct: 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELL 229
Query: 245 KKKKKEEKKKEK 256
K+K+ E++KE
Sbjct: 230 KEKEALERQKEA 241
Score = 35.0 bits (81), Expect = 0.036
Identities = 15/96 (15%), Positives = 50/96 (52%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ K+ K ++ +++ + +E+ K +K+ + KKE+ ++E ++ + + +
Sbjct: 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KKE+ + + + ++ ++K ++ + + +KK +
Sbjct: 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917
Score = 35.0 bits (81), Expect = 0.044
Identities = 18/103 (17%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEE--------EKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+ R + R + ++ + E E++EEK KE+ +E +++ E++ E
Sbjct: 696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + K+ E + ++ E+ K E+ + + + +
Sbjct: 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQA 798
Score = 35.0 bits (81), Expect = 0.046
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKE---KKKEKKKKEKKKEK 228
K E +++ R ++ ++ EE + + K E +K++K + KK+E
Sbjct: 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K ++ K +++ K+E + EK+ K ++E
Sbjct: 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
Score = 33.9 bits (78), Expect = 0.10
Identities = 16/97 (16%), Positives = 49/97 (50%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+ + + K ++EE EEE +E + + E + KKE+ + + + ++ +++
Sbjct: 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ + + +KK++ + K K + +E+ + ++ +
Sbjct: 906 EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
Score = 33.5 bits (77), Expect = 0.12
Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEK-KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
+ E K + +R+ EEE K +K EE + K++ + + +E KE + + +
Sbjct: 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K+ ++K ++ K++ E K+E + +++ ++
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRL 418
Score = 33.5 bits (77), Expect = 0.13
Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ E + R + K KR+ E ++E ++ +E+ + +E + K + +
Sbjct: 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA---KINELE 440
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+K+ K + KK+E K ++ K E++ +
Sbjct: 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
Score = 33.5 bits (77), Expect = 0.14
Identities = 16/80 (20%), Positives = 49/80 (61%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E + K+E+ EE ++ ++ ++ + EK+++ ++ ++++++ ++ + K+K+E +
Sbjct: 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGY 226
Query: 255 EKKKKKKKKEKKKKKDEGRR 274
E K+K+ E++K+ E +
Sbjct: 227 ELLKEKEALERQKEAIERQL 246
Score = 33.1 bits (76), Expect = 0.16
Identities = 16/92 (17%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K R + +++ ++ +E++ + KE+ K +K+ + KK+E ++E ++ +
Sbjct: 819 QKLNRLTLEKEYLEKEIQELQEQR-IDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
++ + + + KK+++E + + ++ ++K E+ +
Sbjct: 878 RDLESRLGDLKKERDELEAQLRELERKIEELE 909
Score = 32.7 bits (75), Expect = 0.20
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 167 DNLEYGYKGGKKERRKQRRR----KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
D L Y K+E R ++ ++E + EK E+ K+E + K++ + +
Sbjct: 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
E+ + ++ + K + EE+K++K + KK+E K +
Sbjct: 413 EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458
Score = 32.7 bits (75), Expect = 0.22
Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
++ R R R E E++ + +K+ +KE ++ ++++ KE+ K +K+ E
Sbjct: 804 EEEVSRIEARLR---EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN 860
Query: 241 KKKEKKKKKEEKKK------EKKKKKKKKEKKKKKDEGR 273
KKE+ +++ E+ + E + KKE+ + + + R
Sbjct: 861 GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
Score = 32.3 bits (74), Expect = 0.26
Identities = 27/95 (28%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E+R+Q R R R++E+ E+ + +EK++ + E KEK+ E++KE +++ E
Sbjct: 194 DEKRQQLERLR---REREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLE 250
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
++ +K ++ + EK+ E+ ++ ++ KK KD G
Sbjct: 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG 285
Score = 32.3 bits (74), Expect = 0.27
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK------- 229
+K R K + K + E+ E E+ +++ E + E K ++K EK K +
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
Query: 230 ----KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++ ++ E+ E K E +++K+ K + KK E +
Sbjct: 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457
Score = 32.3 bits (74), Expect = 0.30
Identities = 16/75 (21%), Positives = 45/75 (60%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+K K EE +E E+ E+ EK+++ ++ +++EK ++ + ++K++ + + K
Sbjct: 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLK 230
Query: 250 EEKKKEKKKKKKKKE 264
E++ E++K+ +++
Sbjct: 231 EKEALERQKEAIERQ 245
Score = 30.4 bits (69), Expect = 1.1
Identities = 22/106 (20%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KER + +R K + E ++ E +E +++ +++ K+++K +E + K++ + + E
Sbjct: 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE 372
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKK--------KKKDEGRRR 275
++ KE + ++E K ++K +K K + + ++E +R
Sbjct: 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL 418
Score = 30.4 bits (69), Expect = 1.3
Identities = 16/81 (19%), Positives = 36/81 (44%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
++E+ K+R + + E+E E K E K+ E + E+ +E K ++ + +
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
Query: 235 KKEKKKKKKEKKKKKEEKKKE 255
+ + + + K EE+
Sbjct: 789 SHSRIPEIQAELSKLEEEVSR 809
Score = 30.0 bits (68), Expect = 1.5
Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+R + +R + E E +K + +E ++E ++E+K+++K E+ + K++ E
Sbjct: 309 SIAEKERELEDAEERLAKLEA-EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELE 367
Query: 238 KKKKK-KEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ + +E K+ E + E K ++K EK K++
Sbjct: 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
Score = 30.0 bits (68), Expect = 1.6
Identities = 22/92 (23%), Positives = 51/92 (55%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ER K R + K K+E E E K++E + +K+ +++ E++ EK ++ +
Sbjct: 204 RREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISEL 263
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
EK+ ++ E+ ++ KK + ++++ K+K
Sbjct: 264 EKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK 295
Score = 29.7 bits (67), Expect = 2.4
Identities = 15/98 (15%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E ++ +R +E++++ ++ +++EK E+ + K++++ E + K+K+
Sbjct: 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKA-ERYQALLKEKREYEGYELLKEKEA 234
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+++K+ +++ ++E +K ++ + +K+ E +
Sbjct: 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272
Score = 28.9 bits (65), Expect = 4.0
Identities = 16/101 (15%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ ++ R + +++ E+ + E E K++ + +++ ++ +E +
Sbjct: 374 EEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE 433
Query: 236 KEKKKKKKEKKKKKEE-KKKEKKKKKKKKEKKKKKDEGRRR 275
+ + ++EK+ K E KK+E K ++ + K + E
Sbjct: 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
Score = 28.5 bits (64), Expect = 4.8
Identities = 13/95 (13%), Positives = 46/95 (48%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ K + EE + E + +K + +E ++E +++ K+++K ++ + +++
Sbjct: 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + ++ +K+ + + + K ++K + R
Sbjct: 367 EDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
Score = 28.1 bits (63), Expect = 6.8
Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+R + R+ + +E +E + +K + EK+ E+ ++E++K K
Sbjct: 684 EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK------- 736
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
E+ ++ +E E++ + K + K+ E +
Sbjct: 737 -ERLEELEEDLSSLEQEIENVKSELKELEARI 767
Score = 28.1 bits (63), Expect = 7.2
Identities = 19/91 (20%), Positives = 45/91 (49%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK + + + K K E E E E EK++E + +++ K + + K +
Sbjct: 279 KKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
E+ +++ E+++K+ +K E+ + K++ +
Sbjct: 339 EELEREIEEERKRRDKLTEEYAELKEELEDL 369
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 39.4 bits (92), Expect = 0.001
Identities = 22/90 (24%), Positives = 47/90 (52%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E+ +R + R KK+E + EE+ +KKE+K ++ K+ E + + K + E
Sbjct: 48 EKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALEL 107
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+K+K+ + EK+ ++ K+ +K+ +
Sbjct: 108 LNLEKDKELELLEKELDELSKELQKQLQNT 137
Score = 36.7 bits (85), Expect = 0.010
Identities = 22/92 (23%), Positives = 49/92 (53%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E+R Q R +K++ + EE+ +KKE+K ++ K+ E +++ + + + E
Sbjct: 52 NEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLE 111
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K K+ + +K+ +E KE +K+ + + +K
Sbjct: 112 KDKELELLEKELDELSKELQKQLQNTAEIIEK 143
Score = 36.7 bits (85), Expect = 0.010
Identities = 24/94 (25%), Positives = 49/94 (52%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E K + K +E E E++ +E KE +K+ + + EKK+E K +++ K
Sbjct: 97 DEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKF 156
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +KK E+ + E +K E++ + + + K++E
Sbjct: 157 ENEKKLEESLELEREKFEEQLHEANLDLEFKENE 190
Score = 35.9 bits (83), Expect = 0.020
Identities = 19/84 (22%), Positives = 45/84 (53%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ E EK+ E + +++ K + +KK ++ E ++EK +++ + + KE ++++E
Sbjct: 135 QNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRE 194
Query: 251 EKKKEKKKKKKKKEKKKKKDEGRR 274
K KK K++ E ++ +G
Sbjct: 195 SKWAILKKLKRRAELGSQQVQGEA 218
Score = 35.2 bits (81), Expect = 0.033
Identities = 20/95 (21%), Positives = 51/95 (53%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+E+ +++++K ++ ++ E ++E K + E +K KE + +K+ + K
Sbjct: 69 LEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSK 128
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E +K+ + + E+K++ K +++ K + +KK E
Sbjct: 129 ELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLE 163
Score = 33.3 bits (76), Expect = 0.13
Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ + + E++KE E E++ E KE +K+ + + EKK++ K +E+ K
Sbjct: 97 DEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKF 156
Query: 242 KKEKK----------------KKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ EKK + + K+ +++++ K + +RR
Sbjct: 157 ENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRR 206
Score = 33.3 bits (76), Expect = 0.14
Identities = 21/92 (22%), Positives = 48/92 (52%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G++ R KQ ++ + + EE E+E E++ + + +KK+ + +E+ +KK++K
Sbjct: 24 GEQARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNL 83
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
++ K+ E + E K E + ++ K+
Sbjct: 84 FNEQIKQFELALQDEIAKLEALELLNLEKDKE 115
Score = 32.5 bits (74), Expect = 0.20
Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK----KKKKKKE 237
+Q + R +E E++ EK+ + + KKKE + +++ +K+++K ++ K+ E
Sbjct: 33 EQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE 92
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKK---KEKKKKKDE 271
+ + K + E +K K+ + KE + E
Sbjct: 93 LALQDEIAKLEALELLNLEKDKELELLEKELDELSKE 129
Score = 32.5 bits (74), Expect = 0.24
Identities = 19/96 (19%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK-KEKKKKKKKK 235
KE + + ++ +++ + + EKK+E K +++ K + EKK +E + +++K
Sbjct: 113 DKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREK 172
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E++ + + +E +++++ K +K K++ E
Sbjct: 173 FEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAE 208
Score = 32.5 bits (74), Expect = 0.25
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE-----KKKKEKKKEKKKK 231
++++Q+ ++ ++ E ++E K E + EK KE K+ E KE +K+
Sbjct: 74 INQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQ 133
Query: 232 KKKKKEKKKKKKEKKKKKEE-KKKEKKKKKKKKEKKKKK 269
+ E +KK+E K +E K + +KK ++ E +++K
Sbjct: 134 LQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREK 172
Score = 32.1 bits (73), Expect = 0.33
Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK---KKKEKKKEKKKKKKK 234
E+ K+ K + +E +++ + + EKK+E K + K + +KK ++ + +
Sbjct: 110 LEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELE 169
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+++ +++ E E K+ E++++ K KK K
Sbjct: 170 REKFEEQLHEANLDLEFKENEEQRESKWAILKKLK 204
Score = 28.6 bits (64), Expect = 3.5
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+KR+ + +E + E EKK E+ E ++EK +E+ + + K+ +++++ K
Sbjct: 142 EKKRENNKNEERLKFENEKKLEESLELEREKFEEQL--HEANLDLEFKENEEQRESKWAI 199
Query: 245 KKKKKEEKKKEKKKKKKKKEK 265
KK K + ++ + + +
Sbjct: 200 LKKLKRRAELGSQQVQGEALE 220
Score = 28.2 bits (63), Expect = 4.5
Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK---EKKKKKK 233
K+ + + + E E++K+ E +++ E KE +K+ + +KK++
Sbjct: 88 IKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKREN 147
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K E++ K + +KK +E + E++K +++ + E
Sbjct: 148 NKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLE 185
Score = 27.9 bits (62), Expect = 6.2
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K+ ++E + ++ EK+ +K+ + + KKKE + +E+ +KK++K ++ K
Sbjct: 30 KQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIK 89
Query: 269 KDE 271
+ E
Sbjct: 90 QFE 92
Score = 27.9 bits (62), Expect = 7.7
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+E K R + KK EE E E+++ +++ + E K+ E+++E K KK
Sbjct: 144 KRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKL 203
Query: 237 EKKKKKKEKKKKKEEKKKE 255
+++ + ++ + E +
Sbjct: 204 KRRAELGSQQVQGEALELP 222
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 39.5 bits (93), Expect = 0.001
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK-KKKEEKKK 254
E+K E ++E +K++K + KE++ ++ K K KK K + K+ +K E +
Sbjct: 239 LEQKAERLRQEAAAYEKQQK---ELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLA 295
Query: 255 EKKKKKKKKEKKKKKDEGRRR 275
E++ ++ K + +R
Sbjct: 296 EERPVEEGKPLAFRFPPPGKR 316
Score = 37.6 bits (88), Expect = 0.005
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 169 LEYG----YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
L+ G YKG +Q+ E +E +K++K+ K++E ++ K
Sbjct: 223 LDRGKLTPYKGNYSSYLEQK-----------AERLRQEAAAYEKQQKELAKEQEWIRRGK 271
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K KK K + K+ +K E + +E +E K
Sbjct: 272 AAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLA 307
Score = 36.1 bits (84), Expect = 0.019
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKK-EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
++K E +E E+++KE KE++ + K K KK K + K+ +K + + +++
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEER 298
Query: 249 KEEKKKEKKKKKKKKEKKKKKD 270
E+ K + K+ K
Sbjct: 299 PVEEGKPLAFRFPPPGKRLGKL 320
Score = 28.4 bits (64), Expect = 4.8
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 154 KDLKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK 213
K+L +E W + G K ++ + R KR K + E+ ++ + +
Sbjct: 258 KELAKEQEW------IRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFP 311
Query: 214 EKKKEKKKK 222
K K
Sbjct: 312 PPGKRLGKL 320
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 38.0 bits (89), Expect = 0.002
Identities = 29/99 (29%), Positives = 52/99 (52%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+E K ++ + + K+E + + K K K K++++E K+ KK+EK+ K+ KK
Sbjct: 65 IEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIKEGKK 124
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK E KK +KK ++ KK K+ +K +K +
Sbjct: 125 PYYLKKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNA 163
Score = 37.3 bits (87), Expect = 0.003
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK---KKKKK 233
K + +++ ++ + + K + K+ +++ K+ KK+EK+ ++ K+ KK +
Sbjct: 74 KTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEI 133
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
KK KKK E KK K+ K +KK+KK K+KK
Sbjct: 134 KKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEKK 168
Score = 29.2 bits (66), Expect = 1.5
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
RK + E++ EE ++ KK K E+K+E K+ + + + K K K+++++ ++
Sbjct: 51 RKNYKFLDDYREKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKE 110
Query: 246 KKKKEEKKKEKKKKK---KKKEKKKKK 269
KK+E++ ++ KK KK E KK
Sbjct: 111 HKKQEKELIKEGKKPYYLKKSEIKKLV 137
Score = 28.4 bits (64), Expect = 2.5
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
RK K ++ E++ EE +K KK K E+K++ K+ + K + K K K +E++ K
Sbjct: 51 RKNYKFLDDYREKEIEELEKALKKTKDSEEKEELKRTL-QSMKSRLKTLKNKDREREILK 109
Query: 250 EEKKKEKKKKKKKKEKKKKKD 270
E KK+EK+ K+ K+ K
Sbjct: 110 EHKKQEKELIKEGKKPYYLKK 130
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 39.2 bits (92), Expect = 0.002
Identities = 24/79 (30%), Positives = 51/79 (64%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K EEEE+ E +EK++E + ++E + + KE +K+ + E +++K+E +KK EEK
Sbjct: 183 KAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEK 242
Query: 253 KKEKKKKKKKKEKKKKKDE 271
+++ +++ + ++K K+E
Sbjct: 243 LRQELERQAEAHEQKLKNE 261
Score = 36.5 bits (85), Expect = 0.011
Identities = 18/76 (23%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 193 KKEEEEKEEEKKEEKKK-EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
KK E K EE++E ++ ++K+E+ K ++E + K+ +++ + + E++K++
Sbjct: 177 KKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELR 236
Query: 252 KKKEKKKKKKKKEKKK 267
KK E+K +++ + + +
Sbjct: 237 KKYEEKLRQELERQAE 252
Score = 34.2 bits (79), Expect = 0.063
Identities = 16/66 (24%), Positives = 40/66 (60%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ +R K K+EE + E++ + E K+ +++ + E ++EK++ +KK +EK +++
Sbjct: 187 EEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQE 246
Query: 243 KEKKKK 248
E++ +
Sbjct: 247 LERQAE 252
Score = 33.1 bits (76), Expect = 0.13
Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK--KKKEKK 246
K + ++E E +EK+EE + ++E + KE EK+ + + ++EK++ KK E+K
Sbjct: 183 KAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEK 242
Query: 247 KKKEEKKKEK 256
++E +++ +
Sbjct: 243 LRQELERQAE 252
Score = 33.1 bits (76), Expect = 0.15
Identities = 14/54 (25%), Positives = 34/54 (62%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E K +E+++ ++ K+K++E K +E+ + E K+ +K+ + E +++K+E
Sbjct: 181 ELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEE 234
Score = 31.5 bits (72), Expect = 0.43
Identities = 13/62 (20%), Positives = 39/62 (62%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E K E+++E ++ K+K ++ K ++E + + K+ E++ + + +++K++ +KK +
Sbjct: 181 ELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYE 240
Query: 270 DE 271
++
Sbjct: 241 EK 242
Score = 30.8 bits (70), Expect = 0.73
Identities = 22/86 (25%), Positives = 50/86 (58%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE+R++ K + + E KE +++ + E ++EK++ +KK E+K ++ +++ +
Sbjct: 195 KEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAH 254
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKK 263
++K K E + E ++E K+ K+K
Sbjct: 255 EQKLKNELALQAIELQREFNKEIKEK 280
Score = 30.4 bits (69), Expect = 1.1
Identities = 19/81 (23%), Positives = 46/81 (56%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
KEE ++ +K E K E+++E ++ K+K ++ K +++ + K+ +K+ +
Sbjct: 169 KEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEF 228
Query: 254 KEKKKKKKKKEKKKKKDEGRR 274
+ +K++ +KK ++K + E R
Sbjct: 229 EREKEELRKKYEEKLRQELER 249
Score = 30.4 bits (69), Expect = 1.2
Identities = 22/98 (22%), Positives = 54/98 (55%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ R + ++ + K EEE + +E EK+ + E++K+E +K+ ++K +++
Sbjct: 188 EELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQEL 247
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
E++ + E+K K E + + +++ ++ K+K E R
Sbjct: 248 ERQAEAHEQKLKNELALQAIELQREFNKEIKEKVEEER 285
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 38.3 bits (89), Expect = 0.002
Identities = 22/85 (25%), Positives = 54/85 (63%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+K K+EE+E +E + K++E+K E ++ +K+KE + +++ +++EK++ +E+
Sbjct: 32 IIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEE 91
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKD 270
+K++E + ++++ K KK K+
Sbjct: 92 EKEEEAEDVKQQEVFSFKRKKPFKE 116
Score = 30.6 bits (69), Expect = 0.62
Identities = 18/86 (20%), Positives = 52/86 (60%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+ K + +++ + K +EEE++ E +E +K+++ E ++E ++++KE+ ++
Sbjct: 31 FIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQE 90
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKK 258
++K+E+ + K+++ ++KK K+
Sbjct: 91 EEKEEEAEDVKQQEVFSFKRKKPFKE 116
Score = 27.9 bits (62), Expect = 4.2
Identities = 18/69 (26%), Positives = 41/69 (59%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++E++ + K K E E ++ +++EK++ ++E+K+E+ + K++E K+KK
Sbjct: 54 EEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKP 113
Query: 237 EKKKKKKEK 245
K+ +EK
Sbjct: 114 FKEMNLEEK 122
Score = 27.5 bits (61), Expect = 5.6
Identities = 15/65 (23%), Positives = 47/65 (72%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
KK ++K+E+K+ + K KE+++K + ++ +K+K+ + ++++ ++++K++ ++E+K
Sbjct: 34 KKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEK 93
Query: 267 KKKDE 271
+++ E
Sbjct: 94 EEEAE 98
Score = 27.5 bits (61), Expect = 6.6
Identities = 15/65 (23%), Positives = 45/65 (69%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
KK +KE++KE + K +++++K + +E +K+K+ + ++E+ ++++K++ +E++
Sbjct: 33 IKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEE 92
Query: 267 KKKDE 271
K+++
Sbjct: 93 KEEEA 97
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 37.2 bits (87), Expect = 0.002
Identities = 23/78 (29%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE--------KKKKKKKKKEKKKKKKEKKKK 248
E + K++KK K+ +++ K+ +K K + ++ K+EKKK+ KEKK++
Sbjct: 53 EAVKVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEE 112
Query: 249 KEEKKKEKKKKKKKKEKK 266
++E+K++ K++KKK + +
Sbjct: 113 EKERKRQLKQQKKKAKHR 130
Score = 36.8 bits (86), Expect = 0.002
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK-----KKEKKKKKKEKKKKKEEKKKE 255
E K KK+KK K+ +++ K+ +K K K E ++ K+EKKK+ +EKK+E
Sbjct: 53 EAVKVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEE 112
Query: 256 KKKKK--KKKEKKKKKDEG 272
+K++K K++KKK K G
Sbjct: 113 EKERKRQLKQQKKKAKHRG 131
Score = 34.1 bits (79), Expect = 0.020
Identities = 21/73 (28%), Positives = 47/73 (64%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K +KQ++ KR +++ +E ++ K ++ K + + K+++KK+ K+KK+++K+
Sbjct: 56 KVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEEKE 115
Query: 237 EKKKKKKEKKKKK 249
K++ K++KKK K
Sbjct: 116 RKRQLKQQKKKAK 128
Score = 32.6 bits (75), Expect = 0.069
Identities = 15/35 (42%), Positives = 28/35 (80%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK 213
ER KQ ++KR +++K+EE+E++ + K++KKK K +
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 32.2 bits (74), Expect = 0.11
Identities = 15/35 (42%), Positives = 28/35 (80%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK 217
+R ++ K+KR KE++E+E+E+K + K++KKK K +
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 29.9 bits (68), Expect = 0.60
Identities = 21/67 (31%), Positives = 41/67 (61%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ K KK+KK K+ +++ K+ KK K ++ K E ++ +++KKK+ KEKK++
Sbjct: 53 EAVKVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEE 112
Query: 269 KDEGRRR 275
+ E +R+
Sbjct: 113 EKERKRQ 119
Score = 27.6 bits (62), Expect = 3.7
Identities = 17/56 (30%), Positives = 38/56 (67%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
KE +K + ++ K E E+ +++K+++ KEKK+E+K+ K++ +++K+K K +
Sbjct: 75 AKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 39.0 bits (91), Expect = 0.002
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 21/123 (17%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEE---------------EKKEEKKKEKKKEKKK 217
K G K+ K++ K++ ++++ + +K + E K++E K K
Sbjct: 364 LKEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKV 423
Query: 218 EKKKKEKKKEKKKKKKKK------KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
EK +++ + K KK +E KK+K+++K++ E +K + K K KK +
Sbjct: 424 EKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLELFKGSKIITYKKKK 483
Query: 272 GRR 274
G+
Sbjct: 484 GKD 486
Score = 30.9 bits (70), Expect = 0.74
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+ +E K +K E +E +K++EK+KE+ + +K + + K
Sbjct: 416 EGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLELFKGSK 475
Query: 227 EKKKKKKKKKE 237
KKKK K+
Sbjct: 476 IITYKKKKGKD 486
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 39.3 bits (92), Expect = 0.002
Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKK-KEKKKEKKKEKKKKEKKKEKKKKKK 233
G + + + Q + + + EE K + E + K + + K ++
Sbjct: 854 GIRNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEE 913
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K +++ + ++ ++ KE + K K
Sbjct: 914 KSAQERMPGADSPEELMKRAKEYQDKHKG 942
Score = 36.3 bits (84), Expect = 0.015
Identities = 11/74 (14%), Positives = 29/74 (39%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
E E + + + +E + + E + K + + K ++K +++ +
Sbjct: 868 TEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPE 927
Query: 257 KKKKKKKEKKKKKD 270
+ K+ KE + K
Sbjct: 928 ELMKRAKEYQDKHK 941
Score = 34.3 bits (79), Expect = 0.064
Identities = 12/79 (15%), Positives = 34/79 (43%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
DN+ Y+G + + R + + + E + K E + K ++K +++
Sbjct: 864 DNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGA 923
Query: 227 EKKKKKKKKKEKKKKKKEK 245
+ ++ K+ ++ + K +
Sbjct: 924 DSPEELMKRAKEYQDKHKG 942
Score = 32.8 bits (75), Expect = 0.19
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK--KKKKKKEKKKKKKEKKKKK- 249
K + + E + + + +E K + E + K + + K +EK ++
Sbjct: 860 KHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQER 919
Query: 250 ---EEKKKEKKKKKKKKEKKKKK 269
+ +E K+ K+ + K K
Sbjct: 920 MPGADSPEELMKRAKEYQDKHKG 942
Score = 32.8 bits (75), Expect = 0.20
Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 10/114 (8%)
Query: 163 GGCGDNLEYGYKGGKK--ERRKQ--------RRRKRKRKRKKEEEEKEEEKKEEKKKEKK 212
GG ++ ++G + E+R Q + + + E + + ++
Sbjct: 829 GGGSQDIIADHQGHQAIIEQRTQDSGIRNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTV 888
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K + E + K + + K +EK +++ E+ ++ K+ + K K
Sbjct: 889 KGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
Score = 32.4 bits (74), Expect = 0.31
Identities = 11/87 (12%), Positives = 32/87 (36%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
R + + + E + + + +E + + + + K E + K E+K
Sbjct: 856 RNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKS 915
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKK 267
++ ++ K+ K+ + + K
Sbjct: 916 AQERMPGADSPEELMKRAKEYQDKHKG 942
>gnl|CDD|227708 COG5421, COG5421, Transposase [DNA replication, recombination, and
repair].
Length = 480
Score = 38.9 bits (91), Expect = 0.002
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+++EE+ + EK+ EK ++ ++ K +E E K + EK K + E
Sbjct: 279 QKKEEQTLRTRIEKELEKAEKSLEKLKGREFNCE--KDARIAAEKILKDYSSVEFLEVDF 336
Query: 254 KEKKKKKKKKEKKKKKDEGR 273
K KKK+++ K + +KDE
Sbjct: 337 KSKKKREEAKRGRPRKDEEL 356
Score = 33.5 bits (77), Expect = 0.11
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K +KKE++ + + EK+ EK +K +K + ++ EK + +K K +
Sbjct: 272 FLLSYKLQKKEEQTLRTRIEKELEKAEKSLEKLKGREFNCEKDARIAAEKILKDYSSVEF 331
Query: 264 EKKKKKDEGRR 274
+ K + +R
Sbjct: 332 LEVDFKSKKKR 342
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 38.5 bits (90), Expect = 0.002
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 212 KKEKKK-EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK-KKKK 269
KE ++ EK+ KE KKKKEKK+ K KK +EE KK + +K K++ ++K
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEK 89
Query: 270 D 270
Sbjct: 90 S 90
Score = 38.1 bits (89), Expect = 0.003
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+E ++ +K+ K+ + K+KK+KK+ K KK ++E KK E +K KK+ ++K
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEK 89
Query: 264 EK 265
Sbjct: 90 SS 91
Score = 35.8 bits (83), Expect = 0.019
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+K+ E+ +++ KE +KKKK+KK+ + KK E++ KK + EK KK+ +EK
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEK 89
Query: 266 KK 267
Sbjct: 90 SS 91
Score = 33.4 bits (77), Expect = 0.10
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+KE E+ E++ KE KKK++KK K KK +E+ KK E +K +++ E+K
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEK 89
Query: 258 KK 259
Sbjct: 90 SS 91
Score = 29.2 bits (66), Expect = 2.2
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
++E E +K+ K+ + +KKK++K+ K KK ++E KK + +K K+ +E
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRL-KSLIKKLEEELKKHIEHNEKTKKRLSEE 88
Query: 256 KKK 258
K
Sbjct: 89 KSS 91
Score = 27.3 bits (61), Expect = 8.5
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K + E++ KE + +KKKEKK+ K +K +E+ KK + EK KK+ ++K
Sbjct: 31 KEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEKS 90
Query: 249 K 249
Sbjct: 91 S 91
Score = 27.3 bits (61), Expect = 9.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ ++ +K+ K+ KK+K+KK+ K KK ++E
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEE 70
>gnl|CDD|236553 PRK09535, btuC, corrinoid ABC transporter permease; Reviewed.
Length = 366
Score = 38.6 bits (90), Expect = 0.002
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 59 ASVGRGAAESIAECQHQFRHHRWNCSSGGPGAGGGGGGKSESTTAPSVLPPTLHIGSREA 118
A+VG A + Q FR+ + S G +G G A VLP + G + A
Sbjct: 103 ATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGA-----VAAIVLPLAVPFGLQAA 157
Query: 119 AFTHAIATAGVVYAVARSCKDGSLP 143
AF A+ A VYA+A ++G P
Sbjct: 158 AFAGALVAAFGVYAIA--TENGRTP 180
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 38.9 bits (91), Expect = 0.002
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE-KKKEKKKKKKKKKEKKKKKKEKKK 247
K K +E++ K K+++K + E + +K+K +K K
Sbjct: 212 KSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDL 271
Query: 248 KKEEKKKEKK--------KKKKKKEKKKKKDE 271
K++ KK K K K + +D
Sbjct: 272 KEKAKKLGISIILFDDMTKNKTTNYKIQNEDP 303
Score = 35.5 bits (82), Expect = 0.029
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK--KKEKKKKEK 224
D L + + K K +E+++ + E + +K+K EK
Sbjct: 208 DTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEK 267
Query: 225 KKEKKKKKKKKKEK-------KKKKKEKKKKKEEK 252
K+ K+K KK K K K + E
Sbjct: 268 IKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNED 302
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 38.9 bits (91), Expect = 0.002
Identities = 21/100 (21%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E+ +R+ E+ K+ E+ E+ +E+ E K+E ++ +++ EK + + ++
Sbjct: 404 REKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463
Query: 238 KKKKKKEKKKKKEEKKKEK--KKKKKKKEKKKKKDEGRRR 275
++ + K +K ++ + + + +K+ +EKKK+ +E R+
Sbjct: 464 REVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503
Score = 37.8 bits (88), Expect = 0.005
Identities = 22/85 (25%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 175 GGKKERRKQRRR--KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
ER ++ KR+ + K E EK E + E ++E + + +K+++ + + + ++ +
Sbjct: 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLE 487
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKK 257
K+ +EKKK+ +E ++K E +K +K
Sbjct: 488 KELEEKKKRVEELERKLAELRKMRK 512
Score = 37.4 bits (87), Expect = 0.007
Identities = 20/87 (22%), Positives = 51/87 (58%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ ++ +R +E+E EEE++ E +K+ KK E+ + ++E + K++ +E K++ ++
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ + E ++E + K +K + + +D
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDR 481
Score = 33.5 bits (77), Expect = 0.13
Identities = 18/95 (18%), Positives = 58/95 (61%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++R K+ +R ++ E K E ++ +++ EK + + + +++ + K +K ++ + +
Sbjct: 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRAR 479
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+++ ++ EK+ ++++K+ E+ ++K + +K +K E
Sbjct: 480 DRRIERLEKELEEKKKRVEELERKLAELRKMRKLE 514
Score = 30.4 bits (69), Expect = 1.00
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K K+EE +E+E EE+++ + +K KK E+ E+ +++ E K++
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENS---------ELKREL 445
Query: 250 EEKKKEKKKKKKKKEKKKKKDEGRRR 275
EE K+E +K + + E+ +++ + R
Sbjct: 446 EELKREIEKLESELERFRREVRDKVR 471
Score = 28.9 bits (65), Expect = 3.1
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ R K R+ + R R + E E+E +E+KK+ ++ E+K + +K +K E K K
Sbjct: 464 REVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVK 523
Query: 237 EKKKKKKEKKKKKEEKKKEKK 257
+K E ++ EE+ K+
Sbjct: 524 VVEKLTLEAIEEAEEEYGIKE 544
Score = 27.4 bits (61), Expect = 9.6
Identities = 19/94 (20%), Positives = 47/94 (50%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
++ +R+ ++ + E + E + + +K + + + + ++ EK+ E+KKK+ ++ E+K
Sbjct: 446 EELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K +K E K K +K + +E
Sbjct: 506 ELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEE 539
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 37.6 bits (88), Expect = 0.002
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 214 EKKKEKKKKEKKKEKKKKKKK--------KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+KK +K KKEK+K++K+ +K K+ ++ K EK ++ E ++++ + ++K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAI 73
Query: 266 K 266
Sbjct: 74 V 74
Score = 35.3 bits (82), Expect = 0.015
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K+K KK KK+++K++K+ +K E K+ EE K EK ++ ++ ++++
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQA 66
Score = 34.9 bits (81), Expect = 0.019
Identities = 16/58 (27%), Positives = 37/58 (63%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+KK +K K++K+K++K+ +K E K+ +E K +K E+ +E ++++ + ++K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
Score = 34.5 bits (80), Expect = 0.025
Identities = 14/58 (24%), Positives = 35/58 (60%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
KK+ KK +K+K K++++ +K + K+ +E K +K E+ ++ +++ + ++K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
Score = 33.3 bits (77), Expect = 0.058
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+KK KK KK+++K++K+ +K + + K+ ++ K +K ++D
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDR 58
Score = 33.3 bits (77), Expect = 0.058
Identities = 15/78 (19%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK-KKKEKKKEKKKKK 232
K KK ++++R+++++ ++ ++ + E ++ E+ K +K E+ +E ++++ + E+K
Sbjct: 15 KKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIV 74
Query: 233 KKKKEKKKKKKEKKKKKE 250
+ K+ ++ + +K E
Sbjct: 75 AQIKQLIEQNRIDRKDGE 92
Score = 33.0 bits (76), Expect = 0.087
Identities = 17/79 (21%), Positives = 45/79 (56%), Gaps = 10/79 (12%)
Query: 202 EKKEEK-KKEKKKEKKKEKK---------KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+KK +K KKEK+K++K+ +K K+ ++ K +K ++ +E ++++ + ++K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAI 73
Query: 252 KKKEKKKKKKKKEKKKKKD 270
+ K+ ++ + +K +
Sbjct: 74 VAQIKQLIEQNRIDRKDGE 92
Score = 28.7 bits (65), Expect = 2.3
Identities = 11/77 (14%), Positives = 47/77 (61%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K++ K+ +++++++RK+ + ++ E K+ ++ + +K ++ +E ++++ + ++K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAI 73
Query: 238 KKKKKKEKKKKKEEKKK 254
+ K+ ++ + ++K
Sbjct: 74 VAQIKQLIEQNRIDRKD 90
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 38.7 bits (89), Expect = 0.002
Identities = 28/95 (29%), Positives = 56/95 (58%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KKE R R K + E+EE++ E++++K +++ E + K E++K+K +++K+K
Sbjct: 134 KKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKT 193
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E++K+K K + E++K+K + EK+ E
Sbjct: 194 EQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKE 228
Score = 33.7 bits (76), Expect = 0.088
Identities = 21/79 (26%), Positives = 50/79 (63%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+Q +K +++++K E+E E + K E++K+K +++K+K +++++K K +
Sbjct: 152 EQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIEL 211
Query: 242 KKEKKKKKEEKKKEKKKKK 260
++EK+K + EK+ K++K
Sbjct: 212 EQEKQKTENEKQDLIKEQK 230
Score = 33.3 bits (75), Expect = 0.13
Identities = 22/91 (24%), Positives = 52/91 (57%)
Query: 166 GDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
G LE + ++E++K + + + + E+E++K E++K++ ++EK+K K
Sbjct: 148 GIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKN 207
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ +++K+K E +K+ K++K K+ E+
Sbjct: 208 AIELEQEKQKTENEKQDLIKEQKDFIKEAEQ 238
Score = 32.9 bits (74), Expect = 0.16
Identities = 20/74 (27%), Positives = 48/74 (64%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+K + + +KE E ++ + E ++E++K E++K+K +K+ + + K E++K+K
Sbjct: 126 KKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQK 185
Query: 250 EEKKKEKKKKKKKK 263
E++K+K +++K+K
Sbjct: 186 TEQEKQKTEQEKQK 199
Score = 32.6 bits (73), Expect = 0.24
Identities = 27/99 (27%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK-KKEKKKKEKKKEKKKKKKKK 235
KK Q +++ + R + + E ++EE+K E++K+K +KE + + K +++K+K
Sbjct: 126 KKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQK 185
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
E++K+K E++K+K K + ++EK+K ++E +
Sbjct: 186 TEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQD 224
Score = 31.8 bits (71), Expect = 0.36
Identities = 21/87 (24%), Positives = 53/87 (60%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++E +K + K+K +++ E + K E++K++ ++EK+K +++K+K K +
Sbjct: 152 EQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIEL 211
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKK 263
E++K+K E +K+ K+++ K+ ++
Sbjct: 212 EQEKQKTENEKQDLIKEQKDFIKEAEQ 238
Score = 29.5 bits (65), Expect = 2.1
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+E + K E+ KQ+ K + + + E+EK +K E++K+K +++K+K
Sbjct: 149 IELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEK---QKTEQEKQKTEQEKQKTSNIAN 205
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K + ++EK+K + EK+ +E+K K+ ++
Sbjct: 206 KNAIELEQEKQKTENEKQDLIKEQKDFIKEAEQ 238
Score = 27.6 bits (60), Expect = 9.6
Identities = 16/76 (21%), Positives = 50/76 (65%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+++K E + +K+ E +++ K + +++++K ++EK+K +KE + + K +++K
Sbjct: 124 QDKKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEK 183
Query: 260 KKKKEKKKKKDEGRRR 275
+K +++K+K ++ +++
Sbjct: 184 QKTEQEKQKTEQEKQK 199
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 37.5 bits (87), Expect = 0.002
Identities = 15/84 (17%), Positives = 49/84 (58%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K +K+E+++EEE+++E++ E+ ++ + E++ E ++E+++ ++ + K +K+
Sbjct: 44 KDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIF 103
Query: 251 EKKKEKKKKKKKKEKKKKKDEGRR 274
++ + + KK ++ ++
Sbjct: 104 NSTQDDNAQNLISKNYKKNEKSKK 127
Score = 37.1 bits (86), Expect = 0.003
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K++ +EEEE++EE+ EE + + +E+ E +++E++ E+ K EKK
Sbjct: 47 KQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNST 106
Query: 249 KEEKKKEKKKKKKKKEKKKKK 269
+++ + K KK +K KK
Sbjct: 107 QDDNAQNLISKNYKKNEKSKK 127
Score = 31.4 bits (71), Expect = 0.31
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK--KEKKKEKKKKEKKKEKKKKKKKK 235
K+ +++ + + + ++E EE E+ + EE+ E + +E+ +E K EKK
Sbjct: 44 KDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIF 103
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKK 259
+ + K KK EK KK
Sbjct: 104 NSTQDDNAQNLISKNYKKNEKSKK 127
Score = 29.1 bits (65), Expect = 1.6
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ ++EE+E+E E+ E+ + E +E ++++++E+ +E K ++K + +
Sbjct: 52 EEEEEEDEEEIEEPEDIEDE--EEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDD 109
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
+ K KK EK KK E
Sbjct: 110 NAQNLISKNYKKNEKSKKTAE 130
Score = 26.7 bits (59), Expect = 9.0
Identities = 21/92 (22%), Positives = 50/92 (54%), Gaps = 17/92 (18%)
Query: 196 EEEKEEEKKEE-----------------KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E++ EEEKK+E K+ E K++K+E ++E+++++++ ++ + +
Sbjct: 10 EKKPEEEKKDENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIE 69
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+++ + +++EE+ +E K EKK D
Sbjct: 70 DEEEIVEDEEEEEEDEEDNVDLKDIEKKNIND 101
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 38.7 bits (90), Expect = 0.003
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 20/97 (20%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE--- 251
E+E + +K++ K +E +++ ++ + E KK ++ K+ KK KK + E
Sbjct: 1162 EKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTE 1221
Query: 252 -----------------KKKEKKKKKKKKEKKKKKDE 271
K K + KKK K+ E
Sbjct: 1222 ETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKE 1258
Score = 34.5 bits (79), Expect = 0.071
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 20/100 (20%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK----------- 238
++ K EE +E+ ++ + E KK ++ +K KK KK + +
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAM 1229
Query: 239 ---------KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K K + KKK ++K+++ + K +
Sbjct: 1230 ETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDR 1269
Score = 33.7 bits (77), Expect = 0.10
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K+ + E+E + K++ K E+ +EK ++ + + KK + KK KK ++
Sbjct: 1156 KDLDALEKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKAS 1215
Query: 254 KEK 256
+ +
Sbjct: 1216 ESE 1218
Score = 33.7 bits (77), Expect = 0.10
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE K + K +R E KK ++ KK KK KK + + ++
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAM 1229
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ + E K K +KK KEK+++ +
Sbjct: 1230 ETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDE 1262
Score = 32.9 bits (75), Expect = 0.21
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
KK R+ ++ +K K+ E E ++ + E E K + + KKK
Sbjct: 1192 GAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAP 1251
Query: 234 KKKEKKKKKKE 244
++K+++ E
Sbjct: 1252 AAAKEKEEEDE 1262
Score = 28.3 bits (63), Expect = 5.0
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
K+ + E++ + KE K ++ +EK + + + KK ++ KK +K +K
Sbjct: 1156 KDLDALEKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 38.3 bits (90), Expect = 0.003
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ +RK +E EE + E+ E K+ + K+ E +E E K+ K+K KE + E +
Sbjct: 36 EERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELE 95
Query: 247 KKKEE 251
+ +
Sbjct: 96 AELDT 100
Score = 38.0 bits (89), Expect = 0.004
Identities = 18/83 (21%), Positives = 43/83 (51%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
R + +KR + +K E EE++K ++ ++ + ++ E KE + K+ ++ ++
Sbjct: 15 REKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELI 74
Query: 244 EKKKKKEEKKKEKKKKKKKKEKK 266
+ K+ +EK KE + + E +
Sbjct: 75 AEVKELKEKLKELEAALDELEAE 97
Score = 32.2 bits (74), Expect = 0.26
Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK--KKK 249
R+K ++ + +K E +E++K ++ E+ + ++ + K+ + K+ E +
Sbjct: 15 REKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELI 74
Query: 250 EEKK--KEKKKKKKKKEKKKKKD 270
E K KEK K+ + + + +
Sbjct: 75 AEVKELKEKLKELEAALDELEAE 97
Score = 27.6 bits (62), Expect = 8.3
Identities = 17/89 (19%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 190 RKRKKEEEEKEEEKKEEKKK-----EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
K +E + EK +++ +K E +E++K ++ E+ + ++ + K+ +
Sbjct: 4 LKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRAL 63
Query: 245 KKKKK--EEKKKEKKKKKKKKEKKKKKDE 271
K+ + EE E K+ K+K ++ + +
Sbjct: 64 KRGEDDAEELIAEVKELKEKLKELEAALD 92
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 38.1 bits (89), Expect = 0.003
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K + E+ K+ + K +KKKK+KKK KK K KK K++K + K K+
Sbjct: 229 KAGVGPDSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKK 288
Query: 251 EKKKEKKKKKKK 262
+++E+ +KK K
Sbjct: 289 AQRRERLQKKIK 300
Score = 36.6 bits (85), Expect = 0.010
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 172 GYKGGKKERRKQRRRKR-------KRKRKKEEEEKEEEKKEEKKKEKKKEK--------K 216
GY K + R R + ++ +EE+ ++ KK+ K K K
Sbjct: 183 GYSKEKDSYDAEVHRDRIFGKHVAEYMKQLKEEDPDKYKKQFSKYIKAGVGPDSLEDMYK 242
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K K KKKKKKK+K KK K KK K+++ + K KK +++++
Sbjct: 243 KAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
Score = 35.0 bits (81), Expect = 0.033
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
D+LE YK R + +K+K+KK+ K KK + KK K++K K K+ ++
Sbjct: 235 DSLEDMYKKAHAAIRANPSKVKKKKKKKK---KVVHKKYKTKKLTGKQRKARVKAKKAQR 291
Query: 227 EKKKKKKKK 235
++ +KK K
Sbjct: 292 RERLQKKIK 300
Score = 28.1 bits (63), Expect = 4.6
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KEE + KK+ K K + KK + K KKK++KKK+ KK K
Sbjct: 213 KEEDPDKYKKQFSKYIKAGVGPDSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKT 272
Query: 264 EKKKKKDEGRR 274
+K K R
Sbjct: 273 KKLTGKQRKAR 283
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 37.0 bits (86), Expect = 0.003
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K+K + EE ++ K + + K + + KK +++ ++ + K ++ +
Sbjct: 78 KKKLKFEELDDLKITAENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSD 137
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
E KE K K K KK K++
Sbjct: 138 ESPKEVKLATKNKTKKHDKEK 158
Score = 34.7 bits (80), Expect = 0.019
Identities = 15/81 (18%), Positives = 35/81 (43%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+K+ + +E ++ + + E K + + +K +E ++ E K ++
Sbjct: 78 KKKLKFEELDDLKITAENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSD 137
Query: 248 KKEEKKKEKKKKKKKKEKKKK 268
+ ++ K K K KK K+K
Sbjct: 138 ESPKEVKLATKNKTKKHDKEK 158
Score = 30.1 bits (68), Expect = 0.73
Identities = 20/72 (27%), Positives = 31/72 (43%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ K KE +E K+E K KK+ E E KKK K +E K + + + +
Sbjct: 44 NDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITAENEIKSIQDL 103
Query: 256 KKKKKKKKEKKK 267
+ KK E+
Sbjct: 104 LQDYKKSLEEDT 115
Score = 30.1 bits (68), Expect = 0.82
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK---KKKEKKKKKEEK 252
E E KK+ K +E K + + + ++ + KK E+ E+ + +
Sbjct: 71 ESAVESLKKKLKFEELDDLKITAENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKL 130
Query: 253 KKEKKKKKKKKEKKKKKD 270
+E + KE K
Sbjct: 131 TQESSSDESPKEVKLATK 148
Score = 29.7 bits (67), Expect = 0.91
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K + + +K EE+ E+ + K ++ + K+ K K K K+ K+
Sbjct: 98 KSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKE 157
Query: 242 K 242
K
Sbjct: 158 K 158
Score = 29.3 bits (66), Expect = 1.2
Identities = 15/65 (23%), Positives = 27/65 (41%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ E + + + K+ EE+ EE E K ++ + K+ + K K KK
Sbjct: 94 ENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKK 153
Query: 237 EKKKK 241
K+K
Sbjct: 154 HDKEK 158
Score = 29.3 bits (66), Expect = 1.4
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK-KKEEK 252
KEE K +++ E + KK+ K E+ K + + K + + KK ++
Sbjct: 60 KEEALKYKKEFESAVESLKKKLKFEELDDLKITAENEIKSIQDLLQDYKKSLEEDTIPNH 119
Query: 253 KKEKKKKKKKKEKKKKKDE 271
E+ + K ++ DE
Sbjct: 120 LNEEVSNETKLTQESSSDE 138
Score = 27.4 bits (61), Expect = 6.7
Identities = 15/91 (16%), Positives = 36/91 (39%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
E + KK+ + + K + E + ++ ++ KK ++ ++ +
Sbjct: 68 KEFESAVESLKKKLKFEELDDLKITAENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNE 127
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
K ++ E K+ K K K +K ++K
Sbjct: 128 TKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 38.1 bits (89), Expect = 0.003
Identities = 15/63 (23%), Positives = 46/63 (73%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E +EEE E ++++++ E+++ + E ++ ++ ++++++EK+++KK+ K++K+ +K+
Sbjct: 147 EVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKET 206
Query: 256 KKK 258
+K
Sbjct: 207 AEK 209
Score = 36.2 bits (84), Expect = 0.012
Identities = 17/60 (28%), Positives = 43/60 (71%), Gaps = 6/60 (10%)
Query: 195 EEEEKEEEKKEEKKKEKKKE------KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
EEEE E ++++++ E+++ ++ E+ ++ +++EK+++KK+ KE+K+++KE +K
Sbjct: 150 EEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAEK 209
Score = 34.6 bits (80), Expect = 0.035
Identities = 14/57 (24%), Positives = 41/57 (71%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
E + R+++R+ ++++ E E ++ EE ++ +++EK++ KK+ +++K+++K+ +K
Sbjct: 153 ELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAEK 209
Score = 33.9 bits (78), Expect = 0.061
Identities = 12/52 (23%), Positives = 39/52 (75%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
++++++ E+ + E E ++ E+ + +++E+K++ KK++K++K+++K+ +K
Sbjct: 158 RQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAEK 209
Score = 31.9 bits (73), Expect = 0.27
Identities = 11/59 (18%), Positives = 42/59 (71%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
EEE E +++ + ++++ + E ++ E+ + +++++K++++K+ K++++++K+ +K
Sbjct: 151 EEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAEK 209
Score = 29.6 bits (67), Expect = 1.4
Identities = 10/51 (19%), Positives = 39/51 (76%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++++++ ++++ + E ++ ++ +++++EEK++ KK+ K++K+++K+ E
Sbjct: 158 RQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAE 208
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 37.7 bits (88), Expect = 0.003
Identities = 24/89 (26%), Positives = 50/89 (56%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
++++ + E + ++ + + ++ +K++KK KKK+K K+ K++
Sbjct: 131 EEEQKSFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKER 190
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K++EKK KK E++ E +++ KK K KKK
Sbjct: 191 KEREKKLKKVEQRLELQRELMKKGKGKKK 219
Score = 36.6 bits (85), Expect = 0.007
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K ++K+K +KK + KE ++++E++K+ KK +++ + ++E K+ K KKKK
Sbjct: 163 EKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIV 222
Query: 237 EKKKKKKEKKKKKEEKK 253
+ K K K KKE K+
Sbjct: 223 KDKDGKVVYKWKKERKR 239
Score = 36.6 bits (85), Expect = 0.007
Identities = 30/89 (33%), Positives = 57/89 (64%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+RR+ R R + ++ +EK+++K +KK++ KE K+ K++++K K+ +++ + ++E
Sbjct: 151 DRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQREL 210
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KK K KKKK + K K K KKE+K+
Sbjct: 211 MKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
Score = 35.4 bits (82), Expect = 0.020
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+R+ + + + EK E++KK+ K+K+K K+ +++KE++KK KK +++ + ++E
Sbjct: 152 RRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQRELM 211
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KK + KKK+ K K K K K E +R
Sbjct: 212 KKGKGKKKKIVKDKDGKVVYKWKKERKR 239
Score = 35.0 bits (81), Expect = 0.022
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 174 KGGKKERRKQRRRKRK---RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
+ KK+ K++R+ K ++++E++ K+ E++ E ++E K+ K +KKK K K+ K
Sbjct: 170 EKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKV 229
Query: 231 KKKKKKEKKK 240
K KKE+K+
Sbjct: 230 VYKWKKERKR 239
Score = 33.5 bits (77), Expect = 0.075
Identities = 24/88 (27%), Positives = 56/88 (63%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+R + + + ++ +E++K++ K+K+K K+ K++KE++K+ KK +++ + +++
Sbjct: 151 DRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQREL 210
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K+ K KK++ K+K K K KK++K
Sbjct: 211 MKKGKGKKKKIVKDKDGKVVYKWKKERK 238
Score = 31.2 bits (71), Expect = 0.40
Identities = 24/83 (28%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKE-EKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
+ + ++ ++++KK ++K + KE +++KE++K+ KK +++ E ++E KK K
Sbjct: 157 PRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKG 216
Query: 235 KKEKKKKKKEKKKKKEEKKKEKK 257
KK+K K K+ K + KK+ K+
Sbjct: 217 KKKKIVKDKDGKVVYKWKKERKR 239
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 38.1 bits (88), Expect = 0.003
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEK---------EEEKKEEKKKEKKKEKKK 217
D Y +++R K + + R ++ + K +E++KE KK K + +
Sbjct: 194 DRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAG 253
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ K + K + K K E + + ++K KE KK K EKK K+
Sbjct: 254 ARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKN 306
Score = 31.5 bits (71), Expect = 0.46
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
+Y +++R++ K + KR K + + K + KK++ + + K+++K+ KK
Sbjct: 185 DYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKK 244
Query: 230 KKK---------------KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K K K E K K + + + KKK K+ +K K ++
Sbjct: 245 IRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEK 301
Score = 30.0 bits (67), Expect = 1.2
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK---EKKKEKKKEKKKKEKKKEKKKKKK 233
K ER R K K + E K + + E + K+K KE KK K EKK K
Sbjct: 247 KWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKN 306
Query: 234 KKKE 237
K+
Sbjct: 307 AAKD 310
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two proteins
encoded by the ATP11 and ATP12 genes. Atp11p is a
molecular chaperone of the mitochondrial matrix that
participates in the biogenesis pathway to form F1, the
catalytic unit of the ATP synthase.
Length = 250
Score = 37.3 bits (87), Expect = 0.004
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
R K +K K+ E E K K + K EKK+ KK K+ K K K K +
Sbjct: 5 RSKLLQKAKESGLEFIERLK--KALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKPAD 62
Query: 245 KKKKKEEKKK--------EKKKKKKKKE 264
KKK ++ K EK K +E
Sbjct: 63 KKKPFDKPFKPLSSILDVEKIKDLSAEE 90
Score = 36.2 bits (84), Expect = 0.011
Identities = 24/73 (32%), Positives = 31/73 (42%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
EK K +K KE E + KK K K +KK+ KK K+ K K K +
Sbjct: 1 YEKYRSKLLQKAKESGLEFIERLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKP 60
Query: 257 KKKKKKKEKKKKK 269
KKK +K K
Sbjct: 61 ADKKKPFDKPFKP 73
Score = 31.6 bits (72), Expect = 0.33
Identities = 22/70 (31%), Positives = 30/70 (42%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
EK K +K KE E ++ KK K K +KK+ KK K+ + K K K
Sbjct: 1 YEKYRSKLLQKAKESGLEFIERLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKP 60
Query: 261 KKKEKKKKKD 270
K+K K
Sbjct: 61 ADKKKPFDKP 70
Score = 28.9 bits (65), Expect = 2.8
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K + K +K K+ + E+ KK K K +KK+ KK K+ K K K K
Sbjct: 3 KYRSKLLQKAKESGLEFIERLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKPAD 62
Query: 269 KDEGR 273
K +
Sbjct: 63 KKKPF 67
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 37.9 bits (88), Expect = 0.004
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K ++R RR K + R K +E + + + E K +K + + + +
Sbjct: 287 KGQKRTTRRVKMRPVRAKPSDEPSLPESDIHE-EIPKLDEKSLSEFLGYMGGIDEDDEDE 345
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKK 261
+ ++ K+E +KK++ KKK +K+K
Sbjct: 346 DDEESKEEVEKKQKVKKKPRKRKVN 370
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 37.5 bits (87), Expect = 0.004
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
EEE ++ + E+ K+K +E +K+ + K K+ K +K++ E KK++ E+ K + K
Sbjct: 11 EEELRKAQSLEELKQKYEEAQKQ--IADGKTLKRLYKVYEKREFELKKQQFEQLKAELSK 68
Query: 260 KKKKEKKKKKD 270
KKKK KK+K D
Sbjct: 69 KKKKFKKEKVD 79
Score = 37.2 bits (86), Expect = 0.007
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EEE ++ + EE K++ ++ +K+ K K+ K +K++ E KK++ E+ K + KKK
Sbjct: 11 EEELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKK 70
Query: 255 EKKKKKK 261
+K KK+K
Sbjct: 71 KKFKKEK 77
Score = 34.5 bits (79), Expect = 0.048
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
RK + EE K++ ++ +K+ K K+ K EK++ + KK++ ++ K + K+KKK K
Sbjct: 15 RKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFK 74
Query: 250 EEKKKEKKKKKKK 262
+EK + K KK
Sbjct: 75 KEKVDVRVKVVKK 87
Score = 32.1 bits (73), Expect = 0.22
Identities = 22/77 (28%), Positives = 46/77 (59%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++E RK + + +++ +E +++ + K K+ K EK++ + KK++ ++ K + KKK
Sbjct: 11 EEELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKK 70
Query: 237 EKKKKKKEKKKKKEEKK 253
+K KK+K + K KK
Sbjct: 71 KKFKKEKVDVRVKVVKK 87
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 37.4 bits (87), Expect = 0.005
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
RR++K ++EEEE E K + +E ++ ++ + +++ K
Sbjct: 174 EALFRREKKE-EEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSG 232
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K KK K+ + K KK
Sbjct: 233 SSSPAKPTSILKKSAAKRSEAPSSSKAKK 261
Score = 29.3 bits (66), Expect = 2.0
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 1/94 (1%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
KKE ++ + K E E+ + ++ E +E + K
Sbjct: 180 EKKEEEEEEEED-EALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSSSPAK 238
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KK K+ + + KK + K +
Sbjct: 239 PTSILKKSAAKRSEAPSSSKAKKNSRGIPKPRDA 272
Score = 27.8 bits (62), Expect = 5.7
Identities = 15/85 (17%), Positives = 25/85 (29%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
G + +RR + EE+ + K KK K+ E K
Sbjct: 199 SFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSSSPAKPTSILKKSAAKRSEAPSSSK 258
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKK 258
KK + K + ++K
Sbjct: 259 AKKNSRGIPKPRDALSSLVVRKKAA 283
Score = 27.4 bits (61), Expect = 9.4
Identities = 13/80 (16%), Positives = 40/80 (50%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
++ EE+++ +K+ +++ KK E + K++ + E+ ++ KE + ++ +
Sbjct: 111 DKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVN 170
Query: 256 KKKKKKKKEKKKKKDEGRRR 275
+ + +KK+++E
Sbjct: 171 SMLEALFRREKKEEEEEEEE 190
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 37.9 bits (89), Expect = 0.005
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+ E+ E++ K+ K + ++++KK++KKK KKKK K + K K KE +++ +
Sbjct: 376 QRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLEL 435
Query: 259 KKKK 262
K
Sbjct: 436 LKNV 439
Score = 35.2 bits (82), Expect = 0.029
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++ ++ E++ K+ K + ++KEKKK+KK+ KKKK + + K K K+ ++ +
Sbjct: 375 LQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLE 434
Query: 271 EGRRR 275
+
Sbjct: 435 LLKNV 439
Score = 34.5 bits (80), Expect = 0.060
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ E+ E+E K+ K + ++++KKKEKKK KKKK K + K K ++ +
Sbjct: 375 LQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATR 430
Score = 34.1 bits (79), Expect = 0.081
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ E E + ++ E++ ++ K + ++K+KKK+KKK KKKK K + K + KE
Sbjct: 368 DTELEVLLQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKE 427
Query: 256 KKK 258
+
Sbjct: 428 ATR 430
Score = 32.9 bits (76), Expect = 0.19
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ E+ E++ ++ K + ++K+KK++KK+ KKKK K K K K+ +++ +
Sbjct: 375 LQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLE 434
Query: 254 KEKKK 258
K
Sbjct: 435 LLKNV 439
Score = 31.8 bits (73), Expect = 0.40
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+R + E+E K+ + + ++KEKKKEKKK +KKK K + K K K+ ++
Sbjct: 375 LQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQ 431
Score = 31.8 bits (73), Expect = 0.41
Identities = 19/80 (23%), Positives = 43/80 (53%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++ E + E + ++ ++ E++ ++ K + ++K+KKKEKKK KK+K K
Sbjct: 359 EQAAASPEYDTELEVLLQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPR 418
Query: 251 EKKKEKKKKKKKKEKKKKKD 270
K + K+ +++ + K+
Sbjct: 419 GKIYKVLKEATRQDLELLKN 438
Score = 29.1 bits (66), Expect = 2.6
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
++ ++ K + ++++KK++KK+ KKK+ K + K K KE ++ E K +
Sbjct: 383 QELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELLKNVWGE 442
Query: 253 KKEKKKKKKK 262
E K ++K
Sbjct: 443 ILESLKAQRK 452
Score = 28.7 bits (65), Expect = 3.8
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+R + +++ ++ + + ++KEKKKEKKK KKKK K K K K+ ++ +
Sbjct: 375 LQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLE 434
Query: 244 EKKKKKEEKKKEKKKKKK 261
K E + K ++K
Sbjct: 435 LLKNVWGEILESLKAQRK 452
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 37.8 bits (88), Expect = 0.005
Identities = 11/98 (11%), Positives = 36/98 (36%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
R + ++ E++ ++ K + E++K+ + + +KK ++ + E
Sbjct: 174 AAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANE 233
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K + + K + + + + +R
Sbjct: 234 SRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKR 271
Score = 36.6 bits (85), Expect = 0.012
Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK---EKKKEKKKKEKKKEKKKKKKKKKE 237
+Q ++ ++ K + EE+KK + E ++KK E+ + + + K +
Sbjct: 182 AEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA 241
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ K ++ + + + E K+ +
Sbjct: 242 SAEAAAAKAREAAAAAEAAAARARAAEAKRTGE 274
Score = 35.5 bits (82), Expect = 0.026
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 177 KKERRKQRRRKRKRKRKKEE-EEKEEEKKEEKKKEKKKEKKKEKKKKEKK--KEKKKKKK 233
K ++ + + ++ E E++ ++ K + +E+KK + E +K
Sbjct: 167 KATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQL--LEERKKTLAQLNSELSADQK 224
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K +E + + K + + K ++ + R
Sbjct: 225 KLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARAR 265
Score = 32.8 bits (75), Expect = 0.19
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 179 ERRKQRRR---KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
E+R Q+ + + ++K + E ++KK E+ + + K + E K ++
Sbjct: 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKARE 252
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKK 260
+ + + E K+ + K
Sbjct: 253 AAAAAEAAAARARAAEAKRTGETYK 277
Score = 32.0 bits (73), Expect = 0.37
Identities = 11/96 (11%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
++ ++ K + EE K+ + + ++K +E + E + + + + K
Sbjct: 193 EQRAQQAKLAQLL---EERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAK 249
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ + + + K+ E K +
Sbjct: 250 AREAAAAAEAAAARARAAEAKRTGETYKPTAPEKML 285
Score = 29.7 bits (67), Expect = 2.0
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKE---EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ ++ K + +RK+ + E ++KK E+ + + K E E K +
Sbjct: 195 RAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA---KAR 251
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ + + + E K+ + K EK
Sbjct: 252 EAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLI 286
Score = 28.1 bits (63), Expect = 5.2
Identities = 13/100 (13%), Positives = 36/100 (36%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ +R R E+ + K K+ + ++ E +++ ++
Sbjct: 139 PEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQ 198
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + +E+KK + E +KK E+ + + +
Sbjct: 199 AKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKN 238
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 37.9 bits (88), Expect = 0.005
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK----EKK 225
E+ K + + K+ + EK+ + KK +E K +
Sbjct: 352 EFEIYLYKIINANPDKLENKKIEISIKPEKKTINNSQIITTKKINIVEESNKNSVHFDTL 411
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K KKK + K++ KK+E +KE KK +K K + +
Sbjct: 412 YKTKIFYHKKKINQNNKEQDIKKEELLEKEFVKKSEKIPKNDELLD 457
Score = 34.8 bits (80), Expect = 0.047
Identities = 27/114 (23%), Positives = 38/114 (33%), Gaps = 9/114 (7%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+ L+ + + K E ++ E K EKK + KK ++
Sbjct: 341 NRLKASVNQVFEFEIYLYKIINANPDKLENKKIEISIKPEKKTINNSQIITTKKINIVEE 400
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK---------KKKEKKKKKDE 271
K K K KKK + KE+ KK KK EK K DE
Sbjct: 401 SNKNSVHFDTLYKTKIFYHKKKINQNNKEQDIKKEELLEKEFVKKSEKIPKNDE 454
Score = 32.1 bits (73), Expect = 0.29
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 166 GDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+E K KK + K+ EE K + K K KK+ + K+
Sbjct: 370 NKKIEISIKPEKKTINNSQIITTKKINIVEESNKNSVHFDTLYKTKIFYHKKKINQNNKE 429
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKE-----EKKKEKKKKKKKKEKK 266
++ KK++ +KE KK ++ K E E K+K K + K
Sbjct: 430 QDIKKEELLEKEFVKKSEKIPKNDELLDNLELAKQKFFNKDIELSK 475
Score = 28.3 bits (63), Expect = 5.3
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ + KK+ + K+++ KKE+ +++ +K +K K E + K+K K
Sbjct: 410 TLYKTKIFYHKKKINQNNKEQDIKKEELLEKEFVKKSEKIPKNDELLDNLELAKQKFFNK 469
Query: 253 KKEKKKKKKKKEKKKKKDEGRR 274
E K +K K K +E
Sbjct: 470 DIELSKNMLQKFNKFKNEESAE 491
Score = 27.5 bits (61), Expect = 8.4
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK------KEKKKKKKKKKEKKKKK 242
K+K + +E++ +K+E +KE K+ +K K E K+K K + K +
Sbjct: 420 KKKINQNNKEQDIKKEELLEKEFVKKSEKIPKNDELLDNLELAKQKFFNKDIELSKNMLQ 479
Query: 243 KEKKKKKEEKKK 254
K K K EE +
Sbjct: 480 KFNKFKNEESAE 491
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 36.7 bits (85), Expect = 0.006
Identities = 18/72 (25%), Positives = 44/72 (61%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E+E ++ K E +++ KE + +++ K K+++ + ++ +K+E + +E + K E+ K
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Query: 255 EKKKKKKKKEKK 266
++ K K++ KK
Sbjct: 61 DENNKLKEENKK 72
Score = 36.7 bits (85), Expect = 0.006
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
KE E KEE+K +E+ E ++ +K+E + ++ + K ++ K E K K+E KK + E
Sbjct: 19 KENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENE 76
Score = 36.3 bits (84), Expect = 0.008
Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 193 KKEEEEKEEEKKEEKKK--EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K+ ++ K E +E+ K E K+E K +++ E ++ +K++ + E+ + K ++ K E
Sbjct: 3 KECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62
Query: 251 EKKKEKKKKKKKKEKKKKKD 270
K +++ KK + E + KD
Sbjct: 63 NNKLKEENKKLENELEALKD 82
Score = 34.3 bits (79), Expect = 0.038
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK--K 242
K + K E E++ K+ E K+E K +++ + ++ +K+E + ++ E K + K
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Query: 243 KEKKKKKEEKKKEKKKKKKKKEK 265
E K KEE KK + + + K++
Sbjct: 61 DENNKLKEENKKLENELEALKDR 83
Score = 34.0 bits (78), Expect = 0.052
Identities = 16/76 (21%), Positives = 44/76 (57%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E++ ++ K E +E ++ + K++ + K+E + ++ +KE+ + E+ + + ++ +
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Query: 256 KKKKKKKKEKKKKKDE 271
+ K K+E KK ++E
Sbjct: 61 DENNKLKEENKKLENE 76
Score = 31.6 bits (72), Expect = 0.32
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKK--KEKKKEKKKEKKKKEKKKEKKKKKKKK 235
++ K+ K + K K+E+ E EE +KEE E+ E K E+ K E K K++ KK +
Sbjct: 15 EDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLE 74
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E + K + E +K+ K+KE
Sbjct: 75 NELEALKDRLLRTVAEYDNYRKRTAKEKE 103
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 37.3 bits (87), Expect = 0.006
Identities = 16/83 (19%), Positives = 49/83 (59%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K++ E E K E + E++ ++K+K++++ + +++ ++ ++ +K E +++K
Sbjct: 202 KEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLA 261
Query: 253 KKEKKKKKKKKEKKKKKDEGRRR 275
++E+ + K +E+++ EG +
Sbjct: 262 EQERMLEHKLQEQEELLKEGFKT 284
Score = 35.7 bits (83), Expect = 0.017
Identities = 18/85 (21%), Positives = 50/85 (58%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ ER K + +++ +E++++EE+ E +++ ++ K+ +K E ++EK ++++
Sbjct: 207 EAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERM 266
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKK 261
+ K +++++ KE K E + +K
Sbjct: 267 LEHKLQEQEELLKEGFKTEAESLQK 291
Score = 35.3 bits (82), Expect = 0.024
Identities = 20/90 (22%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K K + E K E + E++ ++K+K++E+ + +++ ++ K+ EK + ++EK
Sbjct: 202 KEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLA 261
Query: 249 KEEK---KKEKKKKKKKKEKKKKKDEGRRR 275
++E+ K +++++ KE K + E ++
Sbjct: 262 EQERMLEHKLQEQEELLKEGFKTEAESLQK 291
Score = 34.6 bits (80), Expect = 0.037
Identities = 15/82 (18%), Positives = 48/82 (58%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+ + +R K E + E++ +K++++++ + +++ ++ K+ +K + E++K E+
Sbjct: 204 KAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQ 263
Query: 246 KKKKEEKKKEKKKKKKKKEKKK 267
++ E K +E+++ K+ K +
Sbjct: 264 ERMLEHKLQEQEELLKEGFKTE 285
Score = 33.0 bits (76), Expect = 0.14
Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKE-EKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
KE+ + R + + E+E E++KE E+ E ++ +E K+ +K + +++K
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLL 260
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E+++ + K +++EE KE K + + +K+ +D
Sbjct: 261 AEQERMLEHKLQEQEELLKEGFKTEAESLQKEIQD 295
Score = 31.1 bits (71), Expect = 0.50
Identities = 12/65 (18%), Positives = 38/65 (58%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K+K + E+ K E + +++ ++K++++++ E +++ ++ ++ +K + E++K
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLL 260
Query: 270 DEGRR 274
E R
Sbjct: 261 AEQER 265
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 37.0 bits (86), Expect = 0.006
Identities = 32/104 (30%), Positives = 47/104 (45%)
Query: 165 CGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
C +N KE K++ K K K ++ K+ K KK+ K + K K +E
Sbjct: 131 CINNKNNVINKKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEEN 190
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K KK K K++ K K KE +KK KKK+ +K +K
Sbjct: 191 FLIKNKKLKNKQKTLKNILYNLKDKELEKKGYKKKQIEKFFQKI 234
Score = 33.9 bits (78), Expect = 0.066
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK-KEKKKKKKEKKK 247
K ++ E + KK K++ KKK K EK K KK KK K KK + K
Sbjct: 122 KNGSVEKNECINNKNNVINKKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKL 181
Query: 248 KKEEKKKEKKKKKKKKEKKKKK 269
K K +E K KK K K+K
Sbjct: 182 LKIIKIEENFLIKNKKLKNKQK 203
Score = 33.9 bits (78), Expect = 0.072
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK+ K + + +K K+ K KK+ K K K K +E + KK K K+K K
Sbjct: 148 KKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLIKNKKLKNKQKTLKN 207
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K ++ +KK KKK+ +K +K +K K
Sbjct: 208 ILYNLKDKELEKKGYKKKQIEKFFQKIYEKYKN 240
Score = 31.6 bits (72), Expect = 0.37
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K+++ +R +KR +K+ K +K + K K+ K+E KKK K EK K
Sbjct: 101 KEKKIERFKKRVNAYFKKKSNKNGSVEKNECINNKNNVINKKIKEESKKKNSKNIEKLKI 160
Query: 242 KKEKKK-------KKEEKKKEKKKKKKKKEKKKK 268
KK KK KK+ K K K K ++ K
Sbjct: 161 KKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLIK 194
Score = 31.6 bits (72), Expect = 0.43
Identities = 27/73 (36%), Positives = 33/73 (45%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
KEE KK+ K +K + KK KK K KK K K K K +E K +K K K+K
Sbjct: 144 KEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLIKNKKLKNKQK 203
Query: 259 KKKKKEKKKKKDE 271
K K E
Sbjct: 204 TLKNILYNLKDKE 216
Score = 30.8 bits (70), Expect = 0.66
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+EKK E+ K++ KK+ K +K + K KK K+E KKK K +K K
Sbjct: 101 KEKKIERFKKRVNAYFKKKSNKNGSVEKNECINNKNNVINKKIKEESKKKNSKNIEKLKI 160
Query: 265 KKKKK 269
KK K
Sbjct: 161 KKYFK 165
Score = 30.8 bits (70), Expect = 0.70
Identities = 26/73 (35%), Positives = 35/73 (47%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K +E EK+ KK++ +K +K +K K K EK K K K K KK KKKK
Sbjct: 210 YNLKDKELEKKGYKKKQIEKFFQKIYEKYKNKPHFIIEKNKYKDLNKIIGKFKKSFKKKK 269
Query: 250 EEKKKEKKKKKKK 262
+ KK + K
Sbjct: 270 KNSKKNYENIKIN 282
Score = 29.3 bits (66), Expect = 1.8
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K + K + + + + +K + K++ K K KE +KK KK++ +K +K
Sbjct: 175 KDIKIKLLKIIKIEENFLIKNKKLKNKQKTLKNILYNLKDKELEKKGYKKKQIEKFFQKI 234
Query: 237 EKKKKKK-----EKKKKKEEKK---KEKKKKKKKKEKKKKKDE 271
+K K K EK K K+ K K KK KKKK+ KK E
Sbjct: 235 YEKYKNKPHFIIEKNKYKDLNKIIGKFKKSFKKKKKNSKKNYE 277
Score = 27.3 bits (61), Expect = 8.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKK----KKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+ KE +KK KK++ ++ +K +K K K +K K + K K KK +KKK+
Sbjct: 213 KDKELEKKGYKKKQIEKFFQKIYEKYKNKPHFIIEKNKYKDLNKIIGKFKKSFKKKKKNS 272
Query: 258 KKKKKKEKKK 267
KK + K
Sbjct: 273 KKNYENIKIN 282
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 37.5 bits (87), Expect = 0.006
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
EKK K KKK K K K KK+ K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 36.7 bits (85), Expect = 0.013
Identities = 19/49 (38%), Positives = 22/49 (44%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K K ++K K KKK K K K KKK K K KK KK+
Sbjct: 736 ITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 36.7 bits (85), Expect = 0.013
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K EKK + KKK K K K +KK K + KK KK+
Sbjct: 743 PKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 36.3 bits (84), Expect = 0.014
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+KK K KKK + K K KKK K + KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 36.0 bits (83), Expect = 0.020
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+KK K KKK K K K +KK K K K+ KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 33.3 bits (76), Expect = 0.13
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+KK K K+K K K K +KK + K KK K++
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 33.3 bits (76), Expect = 0.16
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+K+ K KKK K K K KKK + K K+ KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 32.9 bits (75), Expect = 0.18
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
++K K KKK K K + KKK + K +K KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 32.9 bits (75), Expect = 0.19
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K K ++K K +KK K K K KKK K + KK +++
Sbjct: 736 ITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 31.7 bits (72), Expect = 0.46
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+KK K KK+ K + K ++K K K KK KK
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 31.7 bits (72), Expect = 0.51
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
E++ K +KK K K + KK+ K + KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 30.6 bits (69), Expect = 1.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
K +K+ K K+K K + K KKK K K KK K++
Sbjct: 743 PKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 29.8 bits (67), Expect = 1.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+KK K +KK + K K KKK K K KK + R
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 29.8 bits (67), Expect = 1.8
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+KK K KKK K K K KKK + K KK +R
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 29.4 bits (66), Expect = 2.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+KK + KKK K + K KKK K K K ++R
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 29.0 bits (65), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
E+K + KK+ + K K +KK K K K+ KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 28.6 bits (64), Expect = 4.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
E++ + +KK K K + K+K K + KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 28.2 bits (63), Expect = 6.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
++K K KK+ + + + KK+ K + KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 36.5 bits (85), Expect = 0.006
Identities = 16/58 (27%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 188 RKRKRKKEEEEKEE-EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
RK+ R E+ E+EE EK++E+++E+ K + ++ + K+K K+ +K+++++ + +
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRA 170
Score = 35.4 bits (82), Expect = 0.015
Identities = 10/49 (20%), Positives = 34/49 (69%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+ E+++E+K+ E+++E+ + K + ++ + K+K K+ ++++ E+ + +
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 34.6 bits (80), Expect = 0.031
Identities = 11/47 (23%), Positives = 33/47 (70%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ E+++E+K++++++E+ K + ++ K+K KE +K+++E+ +
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMR 167
Score = 32.3 bits (74), Expect = 0.18
Identities = 15/56 (26%), Positives = 34/56 (60%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
RKQ R + +R++EE+ EEE++ + K + ++ K+K K+ +K++ ++ +
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRH 168
Score = 31.9 bits (73), Expect = 0.22
Identities = 9/58 (15%), Positives = 37/58 (63%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+++ + ++ E+++E+K+ +++++ + K + ++ K+K K+ +K++ E+ + +
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRA 170
Score = 30.8 bits (70), Expect = 0.58
Identities = 11/49 (22%), Positives = 32/49 (65%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E+ + +++EK+ E++++ + K + ++ + K+K K+ +K++ EE +
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRH 168
Score = 28.4 bits (64), Expect = 3.2
Identities = 8/48 (16%), Positives = 29/48 (60%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
E+ ++ +++ + ++E + + + E+ + K+K K+ +K++ E+ +
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMR 167
Score = 28.1 bits (63), Expect = 4.9
Identities = 13/51 (25%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ E+++++K+ +E++++ K + E+ + K+K KE +K++DE R
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSR---LKQKAKEMQKEEDEEMRH 168
Score = 27.3 bits (61), Expect = 7.3
Identities = 8/50 (16%), Positives = 34/50 (68%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+++ + ++ +++++EK+ +++ ++ + K + ++ + K+K K+ +K+E
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEE 162
Score = 27.3 bits (61), Expect = 7.3
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK 220
+E+R + R+R + K E+ K++ K+ +K+++++ +
Sbjct: 127 EEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 37.5 bits (87), Expect = 0.007
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKK-EKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
KK + K + KK K EK KK ++ KE +KE K K+K
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEIFGDKFTKKK 725
Score = 37.1 bits (86), Expect = 0.009
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ EEE E E K +K +E + K+KK + + + K K ++ E K K
Sbjct: 354 ALSELEEEDENEIKFKKIEENSIDNLDIKEKKIENENDIEGKSDTK-NLEEGFETKDNKN 412
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
+ K + KDE
Sbjct: 413 KNSSFINKTENILTNSPLKDE 433
Score = 33.6 bits (77), Expect = 0.10
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KK E K K K+ + +K KK EK E
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKE 710
Score = 31.3 bits (71), Expect = 0.51
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K+ + K K KK + +K KK ++ K+ +K+ K KKK
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEIFGDKFTKKK 725
Score = 31.3 bits (71), Expect = 0.54
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
KK + K K KK K EK KK +K K+
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKE 710
Score = 31.3 bits (71), Expect = 0.63
Identities = 14/76 (18%), Positives = 30/76 (39%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ +K EE + +EKK E + + + + K ++ + K K K K +
Sbjct: 366 IKFKKIEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFETKDNKNKNSSFINKTENIL 425
Query: 249 KEEKKKEKKKKKKKKE 264
K++ +K +
Sbjct: 426 TNSPLKDELLEKTTEI 441
Score = 29.8 bits (67), Expect = 1.8
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 196 EEEKEEEKKEEKK-KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK--KKKKEKKK 247
++ E K K KK + +K KK EK K+ EK+ K KKK
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEIFGDKFTKKK 725
Score = 28.2 bits (63), Expect = 5.4
Identities = 11/83 (13%), Positives = 31/83 (37%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+E + + +K + + +EKK E + + + + + ++ + + K K
Sbjct: 355 LSELEEEDENEIKFKKIEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFETKDNKNKN 414
Query: 234 KKKEKKKKKKEKKKKKEEKKKEK 256
K + +++ EK
Sbjct: 415 SSFINKTENILTNSPLKDELLEK 437
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 36.6 bits (85), Expect = 0.007
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK------KKEKKKKKKKKEKKKKK 269
KK K ++E + K+ K KK+ KKK++ K+ E K E++ + K+ KK
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Query: 270 D 270
Sbjct: 65 K 65
Score = 35.4 bits (82), Expect = 0.018
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 190 RKRKKEEEEKEEEKKEEK-KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+KRK +E + K+ K KK+ K+K+K K+ + K+ +K +++ + K+ KK
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Query: 249 KEEKKKEKK 257
K E K
Sbjct: 65 KFYVPAEHK 73
Score = 34.3 bits (79), Expect = 0.040
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E ++R+ R+ + ++ + +KK KKK K K+ E KE +K +++ + K+
Sbjct: 1 ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLA 60
Query: 239 KKKKK 243
KK K
Sbjct: 61 KKPGK 65
Score = 33.1 bits (76), Expect = 0.10
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK--KKKKKEKKKKKEEKKKEKKKKK 260
K++ +++ + K+ K KK+ K+K+K K+ E K+ +K +++ K+ KK K
Sbjct: 6 KRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGK 65
Query: 261 KKKEKKKK 268
+ K
Sbjct: 66 FYVPAEHK 73
Score = 31.9 bits (73), Expect = 0.29
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK+K +++ + K+ K KK+ KK++K K+ E K+ R
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAER 51
Score = 28.9 bits (65), Expect = 2.7
Identities = 12/55 (21%), Positives = 27/55 (49%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
K+ + K++ K+KRK + E ++ + ++E + K+ KK + + K
Sbjct: 19 KQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGKFYVPAEHK 73
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 36.1 bits (84), Expect = 0.007
Identities = 17/79 (21%), Positives = 54/79 (68%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K +KQ ++ K+ + + +++++E +KEE+K +K+ E+ +K K++E ++K+++ ++
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQ 93
Query: 238 KKKKKKEKKKKKEEKKKEK 256
K++ +++ ++K+++ +
Sbjct: 94 KQQAAQQELQQKQQELLQP 112
Score = 34.5 bits (80), Expect = 0.019
Identities = 17/69 (24%), Positives = 50/69 (72%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+K+ EK+ +K + + ++K+KE +K+E+K +K+ ++ +K K++E ++K++E +++++
Sbjct: 37 QKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQ 96
Query: 258 KKKKKKEKK 266
+++ ++K
Sbjct: 97 AAQQELQQK 105
Score = 34.5 bits (80), Expect = 0.023
Identities = 15/68 (22%), Positives = 49/68 (72%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++E KK + + +KKEK+ ++++++ +K+ E+ +K K+++ ++++++ ++K++ ++
Sbjct: 41 EKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQ 100
Query: 264 EKKKKKDE 271
E ++K+ E
Sbjct: 101 ELQQKQQE 108
Score = 34.1 bits (79), Expect = 0.033
Identities = 15/73 (20%), Positives = 51/73 (69%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K +K+ EK+ +K + + +K++K+ +K+++K +K+ +E +K K+++ ++K+++ ++
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQ 93
Query: 263 KEKKKKKDEGRRR 275
K++ +++ +++
Sbjct: 94 KQQAAQQELQQKQ 106
Score = 33.0 bits (76), Expect = 0.074
Identities = 15/79 (18%), Positives = 53/79 (67%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ +K+ K K+ + + ++K++E +KE++K +K+ E+ ++ K+++ ++K+++ ++
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQ 93
Query: 243 KEKKKKKEEKKKEKKKKKK 261
K++ ++E ++K+++ +
Sbjct: 94 KQQAAQQELQQKQQELLQP 112
Score = 33.0 bits (76), Expect = 0.077
Identities = 16/68 (23%), Positives = 48/68 (70%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K +K+ EK+ +K + + ++K+K+ +K+E+K +K+ ++ +K K+++ ++K++E ++
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQ 93
Query: 259 KKKKKEKK 266
K++ +++
Sbjct: 94 KQQAAQQE 101
Score = 32.2 bits (74), Expect = 0.12
Identities = 16/83 (19%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEK-KKEKKKEKKKEKKKKEKKKEKKKK 231
GK +++ + +K + + +++EKE +K+E+K +K+ ++ +K K+++ ++K++
Sbjct: 30 SPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQ 89
Query: 232 KKKKKEKKKKKKEKKKKKEEKKK 254
+ ++K++ +++ ++K++E +
Sbjct: 90 ELQQKQQAAQQELQQKQQELLQP 112
Score = 31.8 bits (73), Expect = 0.20
Identities = 17/79 (21%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK-KKKKKKKKEKKKKKKEKKKKK 249
K +++ EKE +K + + ++K+KE +KE++K +K+ ++ +K K+++ ++K+++ ++
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQ 93
Query: 250 EEKKKEKKKKKKKKEKKKK 268
+++ +++ ++K++E +
Sbjct: 94 KQQAAQQELQQKQQELLQP 112
Score = 30.3 bits (69), Expect = 0.62
Identities = 20/80 (25%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K +K+ ++E +K + + ++K+KE +KE++K +K+ E + +K K++E ++K++E +
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSE-EARKAKQQELQQKQQELQ 92
Query: 247 KKKEEKKKEKKKKKKKKEKK 266
+K++ ++E ++K+++ +
Sbjct: 93 QKQQAAQQELQQKQQELLQP 112
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 36.9 bits (86), Expect = 0.008
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 202 EKKEEKKKEKKKEKK--------KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
EK E+ K+ K +K KK KK K K KKKK+K K + ++
Sbjct: 324 EKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEA 383
Query: 254 KEKKKKKKKK 263
K KKK KK
Sbjct: 384 KSSGKKKVKK 393
Score = 34.6 bits (80), Expect = 0.048
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK-------------EKKKKKKKKKEKKK 240
EE K+ KE+ E++ EK E+ KK K K +K KK K K K
Sbjct: 304 DEEGLKKFLVKEKNFNEERVEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLK 363
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KKK+K K E ++ K KKK K
Sbjct: 364 KKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 31.5 bits (72), Expect = 0.45
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE--------KKKKKKEKKKKKEEK 252
E +E KK KEK +++ EK E+ KK K KK KK KK + K
Sbjct: 302 EPDEEGLKKFLVKEKNFNEERVEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAK 361
Query: 253 KKEKKKKKKKKEKKKKKDE 271
K+KKKK K +
Sbjct: 362 LKKKKKKAGASAVPKSETS 380
Score = 30.4 bits (69), Expect = 1.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K+ ++ + + K++KKK K + +E K KKK KK
Sbjct: 349 TKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 29.2 bits (66), Expect = 2.2
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK---------KKKKEKKKKKKEKKK 247
E EE K+ KEK +++ +K E+ K+ K KK K+ KK K K
Sbjct: 302 EPDEEGLKKFLVKEKNFNEERVEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAK 361
Query: 248 KKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K++KKK K E ++ ++
Sbjct: 362 LKKKKKKAGASAVPKSETSQEAKSSGKK 389
Score = 28.1 bits (63), Expect = 5.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK ++ + K +KKK+K K + ++ + KKK KK
Sbjct: 349 TKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 28.1 bits (63), Expect = 5.5
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEE--KEEEKKEEKKKEKKKEKKKEKKKK 222
K G+ E+R++RR + + + +K EE EE KK+ K+ + +++ E KK
Sbjct: 95 KSGELEKRRERREEAEEELEKAIEEGDDEEIKKQSKRTVRVTKEQNEDAKK 145
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 37.0 bits (86), Expect = 0.008
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K K + + + EK E+KK + ++ + K+ E K+ K K +KK K E+
Sbjct: 15 KESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEI 74
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKD 270
KK+ ++ KE+ + K + +
Sbjct: 75 KKELKELKEELTELSAALKALEAE 98
Score = 32.7 bits (75), Expect = 0.20
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKK-KEKKKEKKKK--EKKKEKKKKKKKKKEKKKKKKEK 245
+RKK E EE + + + K+ + K +KK K E KKE K+ K++ E K
Sbjct: 36 DDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKAL 95
Query: 246 KKKKEEK 252
+ + ++K
Sbjct: 96 EAELQDK 102
Score = 32.3 bits (74), Expect = 0.22
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKE--KKKEKKKEKKKKEKKKEKKKKKKK 234
KE K R +K +E KK + E + K + K+ + K +KK K ++
Sbjct: 14 VKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEE 73
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K++ K+ KE+ + K + + + K
Sbjct: 74 IKKELKELKEELTELSAALKALEAELQDK 102
Score = 30.8 bits (70), Expect = 0.86
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 202 EKKEEKKKEKK----------KEKKKEKKKKEKKKE--KKKKKKKKKEKKKKKKEKKKKK 249
+ +E K + E+KK + E + K+ + K+ K K +KK K
Sbjct: 12 DLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKI 71
Query: 250 EEKKKEKKKKKKKKEKKKK 268
EE KKE K+ K++ +
Sbjct: 72 EEIKKELKELKEELTELSA 90
Score = 28.1 bits (63), Expect = 5.7
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
RK R + KE K + EK + KK + ++ + K + K+ K
Sbjct: 4 RKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKA 63
Query: 248 KKEEKKKEKKKKKKKKEKKKKKDE 271
K ++K K ++ KK+ KE K++ E
Sbjct: 64 KGQKKDKIEEIKKELKELKEELTE 87
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 37.1 bits (86), Expect = 0.008
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+ ++ ++K ++KEKKK++ K KE+K++ E +K+ +E +E K+K
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
Score = 35.1 bits (81), Expect = 0.037
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ +E EEK ++K++KK++ K KE+K++ + +++ K+ E+ K+K
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
Score = 34.7 bits (80), Expect = 0.042
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ ++ ++K ++K+KKKE+ K KEEK+++ + +K+ KE
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 34.0 bits (78), Expect = 0.069
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+ ++ +++ ++K+KKKE+ K K+EK++ E +K+ K+ ++ KEK
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
Score = 34.0 bits (78), Expect = 0.080
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
R ++ + E++ + ++KEKKKE+ K K++K++ E +K+ K+ E+ K+K
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
Score = 33.6 bits (77), Expect = 0.10
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ ++ ++K + ++++KKK+E K KE+K++ + EK+ K+
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 33.6 bits (77), Expect = 0.12
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
R +E + E+K + ++KEKKKE+ K +++K++ + +K+ ++
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 32.8 bits (75), Expect = 0.21
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ ++ ++K ++KEKKKE+ K K++K+E + +K K+ EE K
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELK 387
Score = 32.4 bits (74), Expect = 0.25
Identities = 10/50 (20%), Positives = 28/50 (56%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ ++ ++K ++KEKKK++ + K+EK++ + +++ K+
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 32.4 bits (74), Expect = 0.25
Identities = 15/56 (26%), Positives = 34/56 (60%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+E E+K + ++K++KK+E K K++K+++ + +K+ K+ +E K+K
Sbjct: 334 FSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
Score = 32.0 bits (73), Expect = 0.30
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ +E E+K + ++KEKKK+E K +++K++ + EK+ K+
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 31.7 bits (72), Expect = 0.44
Identities = 15/60 (25%), Positives = 35/60 (58%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ ++ ++K ++K++KK++ K K++K+E+ + EK+ K+ +E K+K D
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEKGD 391
Score = 29.3 bits (66), Expect = 2.1
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
R + EE+ + ++K+K+K++ K KE+K+++ + EK+ K+
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 29.3 bits (66), Expect = 2.4
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
R ++ + EEK + ++K++KK+E K +++K+E + +K+ K+ +E K+K
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
Score = 28.6 bits (64), Expect = 4.3
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+ + + +++E++KEE K +E+K+E + +K+ K+ E+ KEK
Sbjct: 334 FSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
Score = 28.2 bits (63), Expect = 5.0
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
R + +K + ++K+++K++ K KE+K+E + EK+ ++
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 27.8 bits (62), Expect = 8.1
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+ + +E+ + +++EKKKE+ K K+++++ E +K K+ ++ KEK
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
Score = 27.4 bits (61), Expect = 9.9
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Q ++ ++KE++K+E K KE+K+E + +K+ ++ E+ K+K
Sbjct: 337 PNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 35.6 bits (83), Expect = 0.009
Identities = 18/80 (22%), Positives = 53/80 (66%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
K +++ +++ KK + E E+ +KE +K ++K +K + +++K+K+ +KK ++ +
Sbjct: 16 GKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQ 75
Query: 241 KKKEKKKKKEEKKKEKKKKK 260
+K++K ++ +K+++++ +K
Sbjct: 76 RKQQKLQQDLQKRQQEELQK 95
Score = 34.9 bits (81), Expect = 0.013
Identities = 17/68 (25%), Positives = 47/68 (69%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
EK+ +K++ + ++ +KE +K ++K +K + ++KK+KE +KK +E +++++K ++
Sbjct: 24 EKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQ 83
Query: 262 KKEKKKKK 269
+K++++
Sbjct: 84 DLQKRQQE 91
Score = 34.5 bits (80), Expect = 0.017
Identities = 22/80 (27%), Positives = 54/80 (67%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K +K+ E+E ++ + E +K EK+ +K KEK +K+ + ++KK+++ +KK ++ +
Sbjct: 16 GKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQ 75
Query: 248 KKEEKKKEKKKKKKKKEKKK 267
+K++K ++ +K++++E +K
Sbjct: 76 RKQQKLQQDLQKRQQEELQK 95
Score = 34.5 bits (80), Expect = 0.018
Identities = 19/73 (26%), Positives = 50/73 (68%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K +K+ EK+ +K++ + +K +K+ +K K+K +K+ + ++KKE++ ++K ++ ++
Sbjct: 17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQR 76
Query: 263 KEKKKKKDEGRRR 275
K++K ++D +R+
Sbjct: 77 KQQKLQQDLQKRQ 89
Score = 33.3 bits (77), Expect = 0.050
Identities = 18/68 (26%), Positives = 46/68 (67%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++E KK + + +K EK+ ++ K++ +K E ++KKEK+ +K+ ++ ++K++K ++
Sbjct: 24 EKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQ 83
Query: 264 EKKKKKDE 271
+ +K++ E
Sbjct: 84 DLQKRQQE 91
Score = 32.9 bits (76), Expect = 0.057
Identities = 24/83 (28%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEK-KKEKKKEKKKEKKKKEKKKEKKKK 231
GK +++ + +KR+ + E+ EKE +K +EK +K+ + ++KKEK+ +KK +
Sbjct: 13 SPAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQ 72
Query: 232 KKKKKEKKKKKKEKKKKKEEKKK 254
+ ++K++K ++ +K+++EE +K
Sbjct: 73 EFQRKQQKLQQDLQKRQQEELQK 95
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 35.7 bits (83), Expect = 0.009
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+K EK ++++KE +K+ ++ K K K+ +K+++E + ++E + K
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDMMKP 92
Score = 32.6 bits (75), Expect = 0.097
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+K EK +K +K+ +K+ ++ +K K +K +K++E+ E +K+
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMD 88
Score = 32.6 bits (75), Expect = 0.11
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K +K +K+EK+ +K+ ++ +K K KK E++++E + +K+ K
Sbjct: 41 KMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDMMK 91
Score = 31.5 bits (72), Expect = 0.23
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K ++ +K++KE +K+ E +K K KK +K+++
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQE 76
Score = 31.1 bits (71), Expect = 0.31
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK--KKKEEKKKEKKKKKKKKEKK 266
+K +K ++++KE +K+ ++ ++ K KK K++EE +++K+ K
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDMMKP 92
Score = 30.7 bits (70), Expect = 0.49
Identities = 10/45 (22%), Positives = 31/45 (68%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++ +K +K++KE +K+ +E +K ++ +K +K++++ + +K+
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKE 84
Score = 29.5 bits (67), Expect = 1.3
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+K +K +K++KE +K+ ++ +K + KK E R+
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQ 75
Score = 28.8 bits (65), Expect = 1.8
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
RK ++ +K+E+E ++ ++ K +K KK EK+++E +++K+
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDM 89
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
splicing factor. These splicing factors consist of an
N-terminal arginine-rich low complexity domain followed
by three tandem RNA recognition motifs (pfam00076). The
well-characterized members of this family are auxilliary
components of the U2 small nuclear ribonuclearprotein
splicing factor (U2AF). These proteins are closely
related to the CC1-like subfamily of splicing factors
(TIGR01622). Members of this subfamily are found in
plants, metazoa and fungi.
Length = 509
Score = 36.8 bits (85), Expect = 0.009
Identities = 12/100 (12%), Positives = 43/100 (43%)
Query: 171 YGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
+ ++ RR+ R R R R R + E+ + + ++ + + + + + +
Sbjct: 16 DRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSR 75
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ +++ + + E+ +++ + + +K +K+ D
Sbjct: 76 DRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWD 115
Score = 35.3 bits (81), Expect = 0.027
Identities = 9/93 (9%), Positives = 41/93 (44%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ R + R R R R+ ++ ++ ++ ++ + + + + +++ +++ +
Sbjct: 26 RRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRSRSV 85
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ + + + + + +K KK+ K
Sbjct: 86 RSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIKP 118
Score = 31.8 bits (72), Expect = 0.35
Identities = 9/100 (9%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ R + R +R R+R ++ + + +++ +++ + +++ + + +
Sbjct: 12 SRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSV 71
Query: 237 EKKK---KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ + +++ + + E+ + + + + + +K D+ R
Sbjct: 72 RRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
Score = 31.4 bits (71), Expect = 0.46
Identities = 8/83 (9%), Positives = 40/83 (48%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ EE ++E EK + +++ E+ + + + + + ++ +++ ++ + + +++ +
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 253 KKEKKKKKKKKEKKKKKDEGRRR 275
+ + + + + + R R
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSR 83
Score = 31.0 bits (70), Expect = 0.76
Identities = 12/95 (12%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 177 KKERRKQRRRKRK-RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
++R + R R R+ R+R E+ + +++ + + + ++ + ++ + +
Sbjct: 28 SRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRSRSVRS 87
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E+ +++ + + +K+ KK+ K +
Sbjct: 88 IEQHRRRLRDRSPSNQWRKDDKKRSLWDIKPPGYE 122
Score = 30.2 bits (68), Expect = 1.1
Identities = 7/100 (7%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEE--EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+E ++R + R R R + E + + + ++ +++ ++ + +++++ +
Sbjct: 3 EEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRS 62
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ ++ + +++ + + ++ +++ +D
Sbjct: 63 PRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSN 102
Score = 29.5 bits (66), Expect = 1.9
Identities = 6/81 (7%), Positives = 31/81 (38%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ ++ R+ R + +R+ + +++ + + + + E+ + + + +
Sbjct: 40 RSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRS 99
Query: 234 KKKEKKKKKKEKKKKKEEKKK 254
+ +K K++ +
Sbjct: 100 PSNQWRKDDKKRSLWDIKPPG 120
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 37.2 bits (87), Expect = 0.009
Identities = 20/71 (28%), Positives = 44/71 (61%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
KE++ KEE K K KK ++ E++K ++++K ++ K K K++EE++++++K
Sbjct: 492 KEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKEEK 551
Query: 259 KKKKKEKKKKK 269
K+ +E + +
Sbjct: 552 DKETEEDEPEG 562
Score = 35.6 bits (83), Expect = 0.025
Identities = 21/74 (28%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
R+KE++ KEE K K KK ++ ++++K +++EK ++ K K KE+++++E+
Sbjct: 490 RRKEKKMKEELKN-LKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEK 548
Query: 252 KKKEKKKKKKKKEK 265
++K+K+ ++ + E
Sbjct: 549 EEKDKETEEDEPEG 562
Score = 34.5 bits (80), Expect = 0.058
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 187 KRKRKRKKEE---EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+RK K+ KEE + KK ++ E++K +++EK ++ + K K K++E++++K+
Sbjct: 490 RRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKE 549
Query: 244 EKKKKKEEKKKEK 256
EK K+ EE + E
Sbjct: 550 EKDKETEEDEPEG 562
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 36.8 bits (86), Expect = 0.009
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K+ ++ + + K+ EEE E+ KK KK KK + +K+E+ ++ + K+K E+ ++
Sbjct: 333 KEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEE 392
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKK 267
+E+ K+ +E+ + + K K
Sbjct: 393 LEEELKELKEELESLYSEGKISVNKT 418
Score = 36.1 bits (84), Expect = 0.015
Identities = 21/86 (24%), Positives = 47/86 (54%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
++ ++ ++E +E EEE ++ KK KK KK + +K+E+ +K + KEK ++ E+
Sbjct: 333 KEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEE 392
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDE 271
+++ ++ KE+ + + K
Sbjct: 393 LEEELKELKEELESLYSEGKISVNKT 418
Score = 33.8 bits (78), Expect = 0.087
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK-KEEKKKEKKKK 259
E K+E K+ E++ ++ +E+ +K KK KK KK + + +K+E+ +K E K+K ++
Sbjct: 331 ELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEEL 390
Query: 260 KKKKEKKKKKDE 271
++ +E+ K+ E
Sbjct: 391 EELEEELKELKE 402
>gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit. All proteins in this
family for wich functions are known are DNA helicases
that function in the nucleotide excision repair and are
endonucleases that make the 3' incision next to DNA
damage. They are part of a pathway requiring UvrA, UvrB,
UvrC, and UvrD homologs. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 655
Score = 36.9 bits (86), Expect = 0.009
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+R+RK + EE + K + + KEK+ KKKKK + KKE KK
Sbjct: 565 ERRRKIQMAYNEEHGITPQTIRKPIRDILDIELKEKEDAAKKKKKGEDLSDLSKKELKKL 624
Query: 249 KEEKKKEKKK 258
++ +KE K+
Sbjct: 625 IKQLEKEMKQ 634
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 36.2 bits (84), Expect = 0.009
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
E E + E E K+ K E K K K K K K KK +E+ K++ + + +
Sbjct: 72 VEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPAS 130
Score = 34.3 bits (79), Expect = 0.047
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ E + E + E E KE K E K K K K + K KK +++ K E K
Sbjct: 64 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKP 123
Query: 255 EKKK 258
+ +
Sbjct: 124 VEPR 127
Score = 31.2 bits (71), Expect = 0.49
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
E + E E K+ K + K K + K K K KK +E+ K+E K + +
Sbjct: 75 EPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KE K + K K K K K + KK EE+ K + K + +
Sbjct: 86 KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 30.0 bits (68), Expect = 1.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E K+ K + K + K K + K +K +++ K+E K +
Sbjct: 83 EPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEP 126
Score = 29.7 bits (67), Expect = 1.3
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ E + + E E + E + + ++ K E K K K K K K KK E+
Sbjct: 56 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEE 115
Query: 257 KKKKKKKEKKKK 268
+ K++ K + +
Sbjct: 116 QPKREVKPVEPR 127
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 36.2 bits (83), Expect = 0.009
Identities = 18/93 (19%), Positives = 58/93 (62%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
D L K K+++ R+ + ++ ++E E+ EE+ E +++E+K +++++++++E+++
Sbjct: 105 DQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERER 164
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
E++ +++ + + + E+ + + E +K +K
Sbjct: 165 EEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 35.4 bits (81), Expect = 0.017
Identities = 17/87 (19%), Positives = 55/87 (63%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK+ K+++ R+ + E+ +E E+ EE+ + +++E+K ++++ ++++E++++++ +
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIE 170
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKK 263
E+ + + +++E + E K +K
Sbjct: 171 EQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 31.6 bits (71), Expect = 0.31
Identities = 13/69 (18%), Positives = 49/69 (71%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
KK++ KK+K ++E+ +K +++ ++ +++ + E++++K ++++ +EE+++E++++ +
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIE 170
Query: 263 KEKKKKKDE 271
++ + E
Sbjct: 171 EQSDDSEHE 179
Score = 31.6 bits (71), Expect = 0.34
Identities = 17/94 (18%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 181 RKQRRRKRKRKRKKEEE---EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
R Q R +K KK++ +E+ +K +++E+ +E+ + ++++EK E++ ++++++E
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++++ E++ E + ++ + + + K ++
Sbjct: 164 REEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 30.8 bits (69), Expect = 0.47
Identities = 14/61 (22%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 217 KEKKKKEKKKEKKKKKKK--KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+++ + KK + KKKK ++E+ +K ++++++ EE+ + +++++K E++ ++++ R
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 275 R 275
R
Sbjct: 164 R 164
Score = 30.0 bits (67), Expect = 1.0
Identities = 16/92 (17%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 184 RRRKRKRKRKKEEEEKEE----EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R R + R KK++ +K++ +++ +K +++E+ +E+ + E+++EK +++ ++E++
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++++E+ +++ E + ++ + + + D+
Sbjct: 162 REREEQTIEEQSDDSEHEIIEQDESETESDDD 193
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 36.4 bits (84), Expect = 0.009
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
RK K+K EEE KE+ + +K K+++ K+ + E K + + +++ E
Sbjct: 94 VRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAG 153
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDE 271
K EE + ++ E+ K+ +
Sbjct: 154 KVHEETEDSYHVEETASEQYKQDMK 178
Score = 31.4 bits (71), Expect = 0.40
Identities = 18/86 (20%), Positives = 42/86 (48%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K + E+ EE E+ K+ KEK E++ ++ K+ +K ++ K E +E +
Sbjct: 154 KVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDE 213
Query: 249 KEEKKKEKKKKKKKKEKKKKKDEGRR 274
++ ++ K K++ K+ +++
Sbjct: 214 EDNPVEDSKAIKEELAKEPVEEQQEV 239
Score = 30.3 bits (68), Expect = 0.92
Identities = 16/85 (18%), Positives = 41/85 (48%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ + + EE E+ ++ KEK E++ E K+ +K ++ K + ++ E
Sbjct: 154 KVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDE 213
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKK 269
+ E+ K K++ K+ +++++
Sbjct: 214 EDNPVEDSKAIKEELAKEPVEEQQE 238
Score = 29.5 bits (66), Expect = 1.8
Identities = 16/91 (17%), Positives = 42/91 (46%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ K K++ +E + +E+K + +++ E K ++ E ++
Sbjct: 110 QSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETA 169
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
++ K+ K+K E++ ++ K+ +K E+ K
Sbjct: 170 SEQYKQDMKEKASEQENEDSKEPVEKAERTK 200
Score = 29.1 bits (65), Expect = 2.3
Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K + EE E +EE + +K K+K +E+ KE+ + +K K++++
Sbjct: 70 KSTSEPTVPPEEAEPHAEEEGQLAVRKTKQK---VEEEVKEQLQSLLEKIVVSKQEEDGP 126
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+ + ++K + + +++ E +
Sbjct: 127 GKEPQLDEDKFLLAEDSDDRQETLEAGKV 155
Score = 28.0 bits (62), Expect = 5.1
Identities = 12/67 (17%), Positives = 35/67 (52%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K++ +EK E++ E KE ++ ++ K + + E+ ++ + K +++ KE
Sbjct: 174 KQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPV 233
Query: 253 KKEKKKK 259
+++++
Sbjct: 234 EEQQEVP 240
Score = 27.6 bits (61), Expect = 6.1
Identities = 14/100 (14%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEE---KKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
G + + K ++ ++ E EE + E+ ++ K+ KEK +
Sbjct: 124 DGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASE 183
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ + K+ +K ++ K E ++ ++ +
Sbjct: 184 QENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKA 223
Score = 27.6 bits (61), Expect = 6.7
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 194 KEEEEKEEEKKEEKKKEK----KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
KE+ + EK K+E+ K+ + E K + +++ + K ++ E
Sbjct: 106 KEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHV 165
Query: 250 EEKKKEKKKKKKKKEKKKKKDE 271
EE E+ K+ K++ ++++E
Sbjct: 166 EETASEQYKQDMKEKASEQENE 187
Score = 27.6 bits (61), Expect = 7.5
Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKE--KKKEKKKKEKKKEKKKKK 232
GK + + ++ ++ +EK E++ E KE +K E+ K E ++
Sbjct: 152 AGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDY 211
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
++ + K K++ ++ E++++
Sbjct: 212 DEEDNPVEDSKAIKEELAKEPVEEQQEVP 240
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 37.1 bits (86), Expect = 0.010
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ E K+E+ ++ K++ KK K+KK+ + K KK K ++ +K+ E
Sbjct: 185 KSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKA-KTDRDVSTSTAASQKKSSDLES 243
Query: 257 KKKKKKKEKKKKKDEGRR 274
K + + KE KD+ ++
Sbjct: 244 KLEAQSKELWSLKDDLKK 261
Score = 36.3 bits (84), Expect = 0.014
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+K + +EE+ EE K+E KK K+K+ K +K K + +KK + +
Sbjct: 184 KKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLES 243
Query: 248 KKEEKKKEKKKKKKKKEKKKKKDEGR 273
K E + KE K +K E R
Sbjct: 244 KLEAQSKELWSLKDDLKKHVSTAELR 269
Score = 29.0 bits (65), Expect = 3.4
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK-KEKKKEKKKKEKKKEKKKKK 232
K K E RKQ +K KRKK+ ++ KK K ++ +KK E K +
Sbjct: 191 KEEKAEERKQESKK-GAKRKKDASGDDKSKK--AKTDRDVSTSTAASQKKSSDLESKLEA 247
Query: 233 KKKKEKKKKKKEKK 246
+ K+ K KK
Sbjct: 248 QSKELWSLKDDLKK 261
Score = 29.0 bits (65), Expect = 3.5
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+ + + ++ +RK+E ++ + KK+ +K K+ K ++ +KK +
Sbjct: 184 KKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLES 243
Query: 238 K-KKKKKEKKKKKEEKKK 254
K + + KE K++ KK
Sbjct: 244 KLEAQSKELWSLKDDLKK 261
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 36.3 bits (84), Expect = 0.010
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
++E + E+ KK+++ E KK+K+ +E K +KK + KEK+ + K EE
Sbjct: 76 DEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTKLTEE 134
Score = 35.1 bits (81), Expect = 0.028
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K E+E++ E ++ KKKE+ + KKKKE ++ K +KK + K+K+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSS 126
Score = 35.1 bits (81), Expect = 0.029
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K E +KE + ++ K+K++ + KKKK+ +E K +K+ + +EK+ + K
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTKLT 132
Query: 264 EK 265
E+
Sbjct: 133 EE 134
Score = 32.0 bits (73), Expect = 0.24
Identities = 11/50 (22%), Positives = 30/50 (60%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ + +++ + ++ K+K++ + +KKK+ EE K +KK + ++K+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
Score = 31.6 bits (72), Expect = 0.30
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
K E++KE + E+ K+K++ E KK+K+ ++ K +KK + K+K+ + K
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTK 130
Score = 31.6 bits (72), Expect = 0.31
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K + +KE + ++ KK+++ + K+KK+ +E K +KK + KEK+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
Score = 31.3 bits (71), Expect = 0.51
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 163 GGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
GG G ++ ++ ++ + ++ K++EE E +KK+E ++ K +KK ++ K
Sbjct: 61 GGTG-VKDFLSDQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIK 119
Query: 223 EKKKEKKKKKKKKKE 237
EK+ + K +E
Sbjct: 120 EKQLSSSLQTKLTEE 134
Score = 30.9 bits (70), Expect = 0.54
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K +++K+ + ++ KKK++ E KKKKE ++ + +KK + K+K+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSS 126
Score = 30.9 bits (70), Expect = 0.54
Identities = 11/50 (22%), Positives = 31/50 (62%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ E+EK+ + ++ KK+++ + KKK++ ++ K ++K + ++K+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 35.4 bits (82), Expect = 0.011
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK---EKKKEKKKKEKKKEKKKKKKKKKE 237
++++KR +E E ++++ + K +KK K+K + K K KK++ +KE
Sbjct: 28 ASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKE 87
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+K+++ K E +K+ + +KKK E K K+E
Sbjct: 88 KEKEERFMKALAEAEKERAELEKKKAEAKLMKEE 121
Score = 35.0 bits (81), Expect = 0.012
Identities = 23/70 (32%), Positives = 46/70 (65%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E E ++ E +KK K+K ++ + K K+++ EK+K+K+++ K + EK++ + EKKK
Sbjct: 54 ESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKA 113
Query: 256 KKKKKKKKEK 265
+ K K+++K
Sbjct: 114 EAKLMKEEKK 123
Score = 30.8 bits (70), Expect = 0.32
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK---EKKKEKKKEKKKKEKKKEKKKKKK 233
+++K+R EE E E+++ + K +KK K+K ++ K K K+++ +K+
Sbjct: 28 ASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKE 87
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K+KE++ K + +KE + EKKK + K K++KK
Sbjct: 88 KEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 28.1 bits (63), Expect = 2.9
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
G KK + K RR K K K+++ E+EKE+E++ K + ++++ E +KK+ + + K++KK
Sbjct: 64 GRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 27.3 bits (61), Expect = 6.0
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKE-----------------------KKKEKKKKK 232
E K + K+ E KK KK+KK+ +KK K+K +
Sbjct: 14 NEPKWKSKRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLR 73
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K + KK++ EK+K+KEE+ + + +K+ + +K +
Sbjct: 74 RDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKK 112
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 34.3 bits (79), Expect = 0.011
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
KK + K E K++ K +KK++ K K K+ + KK + + +K K KK +K
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 266 KKKKD 270
KK
Sbjct: 62 DCKKG 66
Score = 33.6 bits (77), Expect = 0.018
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+K K K + K+K K +K+ + K K K+ K KK + E EK K KK K+
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 265 KKKK 268
KK
Sbjct: 62 DCKK 65
Score = 31.3 bits (71), Expect = 0.14
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
KK + K E K++ K KK++ K K K+ K KK + + +K + KK KK
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 262 KKEKKKKKDEG 272
+K K +
Sbjct: 62 DCKKGCKWEGN 72
Score = 31.3 bits (71), Expect = 0.16
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
++ + + + ++K K +K+ + K K K+ + KK + + +K K +K K+
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 256 KKKKKKKKEKKKKKD 270
KK K E KD
Sbjct: 62 DCKKGCKWEGNTCKD 76
Score = 28.6 bits (64), Expect = 1.1
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+K K K E +EK + +++ K K K+ + KK + + EK K KK+KK
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 247 KKKEEKKKEKKKKK 260
K+ K E K
Sbjct: 62 DCKKGCKWEGNTCK 75
Score = 27.0 bits (60), Expect = 3.8
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
++ K + + +EK + K++ K K ++ K KK + + +K K ++ KK
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 255 EKKKKKKKKEKKKK 268
+ KK K + K
Sbjct: 62 DCKKGCKWEGNTCK 75
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 36.8 bits (85), Expect = 0.011
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K+ ++ EK E KKE K+ +K K K + + K ++++K++K + KK +E
Sbjct: 111 KKTNDDLEKIESKKESINKKNEK-KIKNEASLQVKTQREEKEEKDFIADCWRNLYKKNEE 169
Query: 251 EKKKEKKKKKKKKEKKKKKDEG 272
K+ + K+KK K+K E
Sbjct: 170 RFKEYLENFKRKKFKRKILKEF 191
Score = 34.9 bits (80), Expect = 0.049
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E +K+ K K ++K + E + K + ++KE+K + KK E++ K+ +
Sbjct: 119 KIESKKESINK-KNEKKIKNEASLQVKTQREEKEEKDFIADCWRNLYKKNEERFKEYLEN 177
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+KK K K K+ E K + EK K+K E
Sbjct: 178 FKRKKFKRKILKEFENAKINASEIVGLEKVKEKIE 212
Score = 32.2 bits (73), Expect = 0.35
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 207 KKKEKKKEKKKEKKKK-EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
KK EK + KK+ KK EKK K + + K +++EK++K + KK +E+
Sbjct: 111 KKTNDDLEKIESKKESINKKNEKKIKNEASLQVKTQREEKEEKDFIADCWRNLYKKNEER 170
Query: 266 KKKKDEGRRR 275
K+ E +R
Sbjct: 171 FKEYLENFKR 180
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 35.0 bits (81), Expect = 0.012
Identities = 24/82 (29%), Positives = 56/82 (68%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
R++KR +K E+ + +E + K+ + ++K + K KE K +KK+ K++ EK + +E+
Sbjct: 33 RQQKRTIEKLEQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQEQ 92
Query: 246 KKKKEEKKKEKKKKKKKKEKKK 267
+KK+ + +KE++++K +K++++
Sbjct: 93 EKKRMKAEKEEQEQKHQKQERE 114
Score = 32.7 bits (75), Expect = 0.088
Identities = 23/97 (23%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEE----KKKEKKKEKKKEKKKKEKKKEKKKKK 232
K E+R+ + +R KR + E++ + +E +KKE K+E +K + +E++K++ K +
Sbjct: 41 KLEQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQEQEKKRMKAE 100
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K+++E+K +K+E++ ++++ ++ ++ + +K+ +
Sbjct: 101 KEEQEQKHQKQEREFLAKQEENLEEALQQLQNEKRHE 137
Score = 27.3 bits (61), Expect = 6.2
Identities = 20/81 (24%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEK--KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+++++ E+ ++ + +E ++ K+ + +K K K+ K +KKE K++ ++ + +E
Sbjct: 32 ERQQKRTIEKLEQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQE 91
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
++KK K +K+++E+K +K E
Sbjct: 92 QEKKRMKAEKEEQEQKHQKQE 112
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 36.7 bits (85), Expect = 0.013
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
KG KK++ K K ++E E+ K+ KK +KK K K + K KK+
Sbjct: 418 KGSKKKKGKSTSTKGGTAESIPDDE-EDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESV 476
Query: 234 KKKE 237
K +E
Sbjct: 477 KSQE 480
Score = 34.8 bits (80), Expect = 0.046
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE----KKKKKKEKKKKKE 250
E+ E K KKK+ K K + +E K KK ++K + K
Sbjct: 401 EKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKS 460
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
K K KKE K +++
Sbjct: 461 SKVPSDSKAGGKKESVKSQED 481
Score = 29.8 bits (67), Expect = 1.9
Identities = 16/72 (22%), Positives = 24/72 (33%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+K E K +KKK K K + E+ K+ KK +KK +
Sbjct: 399 SSEKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRD 458
Query: 261 KKKEKKKKKDEG 272
K + G
Sbjct: 459 KSSKVPSDSKAG 470
Score = 29.4 bits (66), Expect = 2.5
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K KKKK K K + +E KK KK +KK +D+ +
Sbjct: 406 SNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKV 463
>gnl|CDD|227666 COG5374, COG5374, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 35.6 bits (82), Expect = 0.013
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKK--KKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
KK K +K + + K + +K + + +K +E+ K +K E +++ +K+ KKK
Sbjct: 133 KKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKK 191
Score = 33.6 bits (77), Expect = 0.056
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
EE EE K+ K K E + K +K + + +K ++E K K + +++
Sbjct: 125 EEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEE--LFKLLDKYNELREQ 182
Query: 261 KKKEKKKKKD 270
+KE KKK+
Sbjct: 183 VQKESSKKKE 192
Score = 32.1 bits (73), Expect = 0.17
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK---KKKKEKKKKKKEKKK 247
+ EE K+ K ++ + + K + +K + + +K + K +K + +E+ +
Sbjct: 125 EEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQ 184
Query: 248 KKEEKKKE 255
K+ KKKE
Sbjct: 185 KESSKKKE 192
Score = 32.1 bits (73), Expect = 0.18
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK-KKKEEKK 253
EE +E KK K + + + K + K + + +K +E+ K +K + +E+ +
Sbjct: 125 EEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQ 184
Query: 254 KEKKKKK 260
KE KKK
Sbjct: 185 KESSKKK 191
Score = 30.5 bits (69), Expect = 0.60
Identities = 11/72 (15%), Positives = 34/72 (47%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+E ++ +K + K E + + + + K + + +K +++ K +K +
Sbjct: 120 VMSIVEEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNEL 179
Query: 233 KKKKEKKKKKKE 244
+++ +K+ KK+
Sbjct: 180 REQVQKESSKKK 191
Score = 29.8 bits (67), Expect = 1.1
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 156 LKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK 215
L+ GG D +E K RK + ++ +EE K +K E +++ +KE
Sbjct: 128 LEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKES 187
Query: 216 KKEK 219
K+K
Sbjct: 188 SKKK 191
Score = 28.6 bits (64), Expect = 2.5
Identities = 11/61 (18%), Positives = 30/61 (49%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+ K ++ E + + + ++ + + +K +E+ + K + +E+ +K+ KK
Sbjct: 131 NAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKK 190
Query: 247 K 247
K
Sbjct: 191 K 191
Score = 27.5 bits (61), Expect = 6.4
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+E K+ K K + + K +K + + +K +++ + K +E R
Sbjct: 129 EENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELRE 181
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 36.3 bits (84), Expect = 0.013
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE-------- 244
K ++ + + +K++E+ + K+K+E+ +EK K ++K+E+ K
Sbjct: 26 KPGSTKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDD 85
Query: 245 ----------KKKKKEEKKKEKKKKKKKKEKKKKK 269
KK KK +KKKE ++KK +K+K
Sbjct: 86 DDDDDTKAWLKKSKKRQKKKEAERKKALLLDEKEK 120
Score = 34.3 bits (79), Expect = 0.059
Identities = 23/84 (27%), Positives = 35/84 (41%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K +EE E +KK+ + EKK+++ KKK K + +
Sbjct: 206 LSKYDEEIEGKKKKSDNLFTLDSGGSTDDEAEKKRQEVKKKLKINNVSLDDDSTETPASD 265
Query: 252 KKKEKKKKKKKKEKKKKKDEGRRR 275
+ K KK KKKKK + +RR
Sbjct: 266 YYDVSEMVKFKKPKKKKKKKKKRR 289
Score = 32.8 bits (75), Expect = 0.21
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK---------------KKKKKEK 238
K+ +E+ E K++ ++ +K K +EK+++ K K KK KK +
Sbjct: 43 KKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQ 102
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEK 265
KKK+ E+KK +KEK++ + +
Sbjct: 103 KKKEAERKKALLLDEKEKERAAEYTSE 129
Score = 32.4 bits (74), Expect = 0.23
Identities = 19/98 (19%), Positives = 50/98 (51%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Y + + K+ ++K+K+K+K+ ++ E+E + E + + K +E+ +
Sbjct: 267 YDVSEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSP 326
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KK+KE+++ + + + K+++ ++K+KK
Sbjct: 327 KKRKEEQEDDDFVEDDDDLQASLAKQRRLAQKKRKKLR 364
Score = 32.4 bits (74), Expect = 0.27
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 23/118 (19%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K+++ +K+K ++++K ++ K +++ E KK+K + +
Sbjct: 177 EKDKKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEIEGKKKKSDNLFTLDSGGSTDDEA 236
Query: 237 EKKKKKKEKKKKKEEK-----------------------KKEKKKKKKKKEKKKKKDE 271
EKK+++ +KK K KK KKKKKKKK+++K DE
Sbjct: 237 EKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDE 294
Score = 32.4 bits (74), Expect = 0.28
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 16/80 (20%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK----------------KKEKKKK 231
+KR+ + E + K EE +E+ K ++K ++ K K KK KK++
Sbjct: 43 KKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQ 102
Query: 232 KKKKKEKKKKKKEKKKKKEE 251
KKK+ E+KK +K+KE
Sbjct: 103 KKKEAERKKALLLDEKEKER 122
Score = 31.7 bits (72), Expect = 0.46
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKE--KKKEKKKEKKKKEKKKEKKKK 231
G + +++R++ K+K K +++ E + E K KK K+KKK+KKK+
Sbjct: 229 GGSTDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKR 288
Query: 232 KKKKKE----------KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+K E +K +EE + + KK+KE+++ D
Sbjct: 289 RKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEEQEDDD 337
Score = 31.3 bits (71), Expect = 0.63
Identities = 20/112 (17%), Positives = 57/112 (50%), Gaps = 16/112 (14%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK-- 234
K +++K++++KR++ ++E E E E +K+ ++E + E +K+K++++
Sbjct: 277 KPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEEQEDD 336
Query: 235 --------------KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K+ + +KK KK + E+ ++ +++ + E++ ++
Sbjct: 337 DFVEDDDDLQASLAKQRRLAQKKRKKLRPEDIARQIAEERSEDEEEAAENND 388
Score = 30.5 bits (69), Expect = 1.1
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK----------------KKEKKKE 227
++R+ + + K++ EE E+ + ++K ++ K K KK KK++
Sbjct: 43 KKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQ 102
Query: 228 KKKKKKKKKEKKKKKKEKKKKKE 250
KKK+ ++KK +KEK++ E
Sbjct: 103 KKKEAERKKALLLDEKEKERAAE 125
Score = 30.1 bits (68), Expect = 1.4
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+E+R++ + K E+++ +++ K KK KK++KKKE ++K+ +K+K++
Sbjct: 64 KAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLLDEKEKERA 123
Query: 236 KEK 238
E
Sbjct: 124 AEY 126
Score = 29.0 bits (65), Expect = 3.4
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K+ ++ + KK++++ + K+K+E+ ++K K +EK+++ K K E
Sbjct: 24 GAKPGSTKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGE 83
Score = 28.2 bits (63), Expect = 5.7
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK---- 257
K K+ + + KK++++ E K+K+++ +EK K +EK+++ + K
Sbjct: 25 AKPGSTKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGED 84
Query: 258 -----------KKKKKKEKKKKKDEGR 273
KK KK++KKK+ + +
Sbjct: 85 DDDDDDTKAWLKKSKKRQKKKEAERKK 111
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 35.7 bits (83), Expect = 0.015
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK--KKKKK 233
+K+ R +R ++ +K+ + E E+ + EK K+ KK KK KKKK+K+K+ KK
Sbjct: 118 ARKKMRALKRLEKAKKKAEAIAEDEDISEREKAKQIKKLYKKAKKKKKKRKKTYVVAKKG 177
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K + + K K K K + KK + K K KK
Sbjct: 178 NKGKAGRPKGVKGKYKVVDPRMKKDLRALKRKAKK 212
Score = 27.3 bits (61), Expect = 7.2
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK--- 245
K+ K + +EE K+K K+ + KK E K KK + K+ EK KKK E
Sbjct: 81 KKHNKPQLPITKEEVAAYKEKLKEINARPIKKVAEAKARKKMRALKRLEKAKKKAEAIAE 140
Query: 246 ------KKKKEEKKKEKKKKKKKKEKKKKK 269
++K ++ KK KK KKKK+K+KK
Sbjct: 141 DEDISEREKAKQIKKLYKKAKKKKKKRKKT 170
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors including
the Pad-1 protein (N. crassa), CAPER (M. musculus) and
CC1.3 (H.sapiens). These proteins are characterized by
an N-terminal arginine-rich, low complexity domain
followed by three (or in the case of 4 H. sapiens
paralogs, two) RNA recognition domains (rrm: pfam00706).
These splicing factors are closely related to the U2AF
splicing factor family (TIGR01642). A homologous gene
from Plasmodium falciparum was identified in the course
of the analysis of that genome at TIGR and was included
in the seed.
Length = 457
Score = 36.0 bits (83), Expect = 0.015
Identities = 8/80 (10%), Positives = 31/80 (38%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
++R + R R R+ K E + + +++++ + ++ + + + + +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 236 KEKKKKKKEKKKKKEEKKKE 255
+ + ++ KE
Sbjct: 61 PRGDRSYRRDDRRSGRNTKE 80
Score = 32.9 bits (75), Expect = 0.19
Identities = 10/95 (10%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R + R R R R + +K E+ + + + + + ++++++ + ++ + +
Sbjct: 1 RYRDRERGRLRND-----TRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSP 55
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ + + ++ +++ + KE + + R
Sbjct: 56 NRYYRPRGDRSYRRDDRRSGRNTKEPLTEAERDDR 90
Score = 31.4 bits (71), Expect = 0.48
Identities = 6/87 (6%), Positives = 36/87 (41%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
Y+ ++ R + R+ + R++ + +++++ + + + + + + +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+ + ++ + + +E E ++
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAER 87
Score = 31.4 bits (71), Expect = 0.50
Identities = 6/83 (7%), Positives = 40/83 (48%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ER + R R+ + +E + ++ ++ + ++ + ++ + + + + + + +
Sbjct: 5 RERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGD 64
Query: 238 KKKKKKEKKKKKEEKKKEKKKKK 260
+ ++ +++ + K+ + ++
Sbjct: 65 RSYRRDDRRSGRNTKEPLTEAER 87
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 35.1 bits (81), Expect = 0.016
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K + K+ +RK E+E E++ ++ + E + ++K + + + K+KKE + K
Sbjct: 102 KDDQTKKLEERKGLEKEIAEKEISRQELD--SEIAELERKILELQRQAALLKEKKEAEDK 159
Query: 242 KKEKKKKKEEKKKE 255
+ + K + K K+
Sbjct: 160 EIARLKSEASKIKQ 173
Score = 30.9 bits (70), Expect = 0.42
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+ + ++ +RK K+ E++ ++ + + + + K E +++ K+KK+ + KE
Sbjct: 102 KDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALL-KEKKEAEDKE 160
Query: 238 KKKKKKEKKKKKEE 251
+ K E K K+E
Sbjct: 161 IARLKSEASKIKQE 174
Score = 30.5 bits (69), Expect = 0.68
Identities = 14/59 (23%), Positives = 36/59 (61%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K+ + +K +E+K EK+ +K+ +++ + + + E+K + +++ K+KK+ E K+
Sbjct: 102 KDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEAEDKE 160
Score = 27.0 bits (60), Expect = 8.9
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ R K + + ++ EE K EK+ +KE ++E E + ++K E +++
Sbjct: 92 QSRLNKLLSLKDDQTKKLEERKGLEKEIA-----EKEISRQELDSEIAELERKILELQRQ 146
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K+KKE + KE + K + K K+
Sbjct: 147 AALLKEKKEAEDKEIARLKSEASKIKQ 173
>gnl|CDD|221868 pfam12938, M_domain, M domain of GW182.
Length = 238
Score = 35.6 bits (82), Expect = 0.017
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 8/104 (7%)
Query: 2 SSDLSSQPISEPSSPPINAGVGFAPPISLEDSARVCSRVPGLSFGQVRQCSLFADHMASV 61
S ++S P S+ + P G G P + + + L+ + L +
Sbjct: 20 GSSVNSPPFSQNNLPNNLGGGGGGPGGGGGGNNPNLASLSSLTSQGL-GKILSGLQPPPL 78
Query: 62 GRGAAESIAECQHQFRHHRWNCSSGGPGAGGGGGGKSESTTAPS 105
G G GGPG + PS
Sbjct: 79 GNGGGSGAGGPGP-------VGGGGGPGVAPNNIQPNAQAQQPS 115
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 35.3 bits (82), Expect = 0.018
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 203 KKEEKKKEKKKEKKKEK-----KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+K K+EK KK K + ++EK+KKK KE+KK KE+K+K EE
Sbjct: 68 RKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 34.2 bits (79), Expect = 0.043
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK---KKKKEKKKKKKEKKKK--KEEK 252
E + KE +K K+ +K K+EK KK K + +++KEKKK KEEK
Sbjct: 50 ETDYATKEVFRKNFFKDFRKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEK 109
Query: 253 KKEKKKKKKKKEK 265
K K++K+K +E
Sbjct: 110 KAIKEEKEKLEEP 122
Score = 29.5 bits (67), Expect = 1.3
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ +K K+EK KK K + ++++EKKK K++KK K++K+
Sbjct: 65 KDFRKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKL 119
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKK 220
++E+E+K+ KEEKK K++++K E+
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 28.4 bits (64), Expect = 3.5
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
EE++E+KK K+EKK K +EK+K E+
Sbjct: 95 EEEKEKKKAMSKEEKKAIK-EEKEKLEEP 122
Score = 26.8 bits (60), Expect = 9.7
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKK 212
++++K+ +EEK+ K+E++K E+
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 35.0 bits (81), Expect = 0.020
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
R++ K + R + EEE E EK E ++ +KK ++ +KKEK+ E +K+ K +
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKK-IEEIYEKKEKQAEMEKQIIISNAKNE 61
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ + +EE ++ K++ +D+
Sbjct: 62 ARLKVLNAREELLDSVFEEAKERLANLSEDKDEY 95
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 35.6 bits (82), Expect = 0.021
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
++ K +K K K +E+EE EE + EK++E+++ +K+++E++ K+K K+ +
Sbjct: 126 QKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLD 185
Query: 238 K--------------KKKKKEKKKKKEEKKKEKKK 258
+ KK K + + EK K +K
Sbjct: 186 ELETSTLPAAELIAQHKKNSVKLEMQVEKPKPEKP 220
Score = 32.5 bits (74), Expect = 0.23
Identities = 19/66 (28%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 198 EKEEEKKEEKKKEKKK--EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E ++K E +KE K +K KEK +E+++ ++ + +K+E+++++ +K++EE++
Sbjct: 116 ENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMN 175
Query: 256 KKKKKK 261
K+K K+
Sbjct: 176 KRKNKQ 181
Score = 32.1 bits (73), Expect = 0.24
Identities = 15/65 (23%), Positives = 42/65 (64%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
++K E ++E K +K K+K +++E+ +E + +K+++E+++ +K++++++ K
Sbjct: 117 NTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNK 176
Query: 255 EKKKK 259
K K+
Sbjct: 177 RKNKQ 181
Score = 32.1 bits (73), Expect = 0.24
Identities = 15/64 (23%), Positives = 43/64 (67%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+K+ ++E K+ +K ++K +++E+ +E + EK++E++++ +KE+++++ K+K
Sbjct: 119 KKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRK 178
Query: 248 KKEE 251
K+
Sbjct: 179 NKQA 182
Score = 31.3 bits (71), Expect = 0.42
Identities = 18/70 (25%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 204 KEEKKKEKKKEKKKE--KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+KK E +++ K+ +K KEK ++++ ++ E +K+++E+++ +K++E+++ K
Sbjct: 117 NTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNK 176
Query: 262 KKEKKKKKDE 271
+K K+ DE
Sbjct: 177 RKNKQALLDE 186
Score = 27.8 bits (62), Expect = 6.0
Identities = 13/65 (20%), Positives = 42/65 (64%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K+K E +KE + +K KEK +++E ++ + +++++++++ +K++++++ K
Sbjct: 117 NTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNK 176
Query: 249 KEEKK 253
++ K+
Sbjct: 177 RKNKQ 181
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved in
a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 33.7 bits (78), Expect = 0.022
Identities = 22/88 (25%), Positives = 47/88 (53%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+++ R +R K+K + EK+ + KK+ + E++KK KK KK + E+K
Sbjct: 3 KKQIRDIERLLKKKDLPADVRVEKERALEALKKELEDAERRKKRKKMAKKYHMVRFFERK 62
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K + K+ +++ ++ +K+ K K++
Sbjct: 63 KATRRLKQLEKKLEETSDEKEIKDLKEQ 90
Score = 31.0 bits (71), Expect = 0.22
Identities = 26/94 (27%), Positives = 50/94 (53%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ R +R K+K EKE + KK+ + E++K++KK KK + ++KK
Sbjct: 4 KQIRDIERLLKKKDLPADVRVEKERALEALKKELEDAERRKKRKKMAKKYHMVRFFERKK 63
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++ K+ +KK +E +++ K K++ K + D
Sbjct: 64 ATRRLKQLEKKLEETSDEKEIKDLKEQLSKAEVD 97
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 36.0 bits (83), Expect = 0.023
Identities = 14/84 (16%), Positives = 40/84 (47%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+R KR + E EE+ ++ + ++E + + ++K + K++ ++
Sbjct: 390 KRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDT 449
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKK 267
+K++ ++K+ +++K E K
Sbjct: 450 AWQKQRFLREKQTAFERQKTEHTK 473
Score = 33.7 bits (77), Expect = 0.10
Identities = 11/83 (13%), Positives = 38/83 (45%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K+ E++ EE+ ++ + ++E + + +E+K + K+E +
Sbjct: 392 LDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAW 451
Query: 250 EEKKKEKKKKKKKKEKKKKKDEG 272
++++ ++K+ + +K + +
Sbjct: 452 QKQRFLREKQTAFERQKTEHTKI 474
Score = 33.7 bits (77), Expect = 0.11
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKK-------EKKKEKKKEKKKKEKKKEKKKKKKK 234
K+ KR + + EEE ++ +E++ E+K + KE+ ++
Sbjct: 390 KRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDT 449
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKK 258
+K++ +EK+ E +K E K
Sbjct: 450 AWQKQRFLREKQTAFERQKTEHTK 473
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 35.6 bits (82), Expect = 0.024
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
R+RKR+R E +E++ + + E EK+++++++E K
Sbjct: 356 RKRKRRRVPPLPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 32.9 bits (75), Expect = 0.18
Identities = 10/42 (23%), Positives = 27/42 (64%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
R+++RRR +E++++ ++E EK++++++E+ K
Sbjct: 356 RKRKRRRVPPLPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 32.5 bits (74), Expect = 0.25
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
RKRKR+R E ++ E+ E E EK++K +++E K
Sbjct: 356 RKRKRRRVPPLPEYSSDEDEDDSDED--EVDYEKERKRRREEDK 397
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 34.9 bits (81), Expect = 0.024
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 208 KKEKKKEKKKEKKKKEK----------KKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+K KKE K EK + EK+KKK KE+KK KE+K K EE
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 34.1 bits (79), Expect = 0.048
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 216 KKEKKKKEKKKEKKKKK---KKKKEKKKKKKEKKK--KKEEKKKEKKKKKKKKEK 265
+K KK+ K +K E + +KEKKK KEEKK K++K K +E
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 33.3 bits (77), Expect = 0.078
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
E +KE+KK K+EKK K++K+K +E
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 31.8 bits (73), Expect = 0.29
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
E E+EKK+ KE+KK K+EK K E+
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 31.0 bits (71), Expect = 0.45
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
E +KEKKK KE+KK K+++ K ++
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 30.2 bits (69), Expect = 0.83
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K KK+ K+ +K + E +KEKKK K+EKK K+E
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEE 116
Score = 28.3 bits (64), Expect = 3.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKK 220
+ E+E+K+ KEEKK K+++ K E+
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 27.5 bits (62), Expect = 6.8
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK----EKKKKKKKKEKKKKK 269
+K +K+ K +K + + + +KE+KK EKK K++K+K ++
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 35.5 bits (82), Expect = 0.024
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 24/111 (21%)
Query: 168 NLEYGYKGGKKE--RRKQRRR--------------KRKRKRKKEEEEKEEEKKEEKKKEK 211
NL KGG E R QRRR K R+R+ E + +KE
Sbjct: 5 NLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFE--------LDSLRKEF 56
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K K+ K K K++ + + KE KK+ EK+ + +E K K K
Sbjct: 57 NKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 35.7 bits (83), Expect = 0.024
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K KK+ K K+ +E+K KEE K K +K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAA 51
Score = 33.4 bits (77), Expect = 0.11
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KK+ K K+ EE+K K++ K K R+
Sbjct: 13 LKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 33.4 bits (77), Expect = 0.12
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
K KK+ K K+ ++EK KE+ K K +K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAA 51
Score = 33.0 bits (76), Expect = 0.17
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
K KK+ K K+ +++K K+E K K +K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAA 50
Score = 32.7 bits (75), Expect = 0.20
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
E E K KK K K+ E++K K++ K + + +K
Sbjct: 1 AESNGEPLSKNALKKRLKA-KQAEEEKAAKEEAKAAAAAAAAKGRSRKSAA 50
Score = 32.7 bits (75), Expect = 0.20
Identities = 15/78 (19%), Positives = 30/78 (38%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
E + K++ K K+ EEEK +++ + K + +K E +
Sbjct: 1 AESNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQ 60
Query: 234 KKKEKKKKKKEKKKKKEE 251
+ + KK + + K E
Sbjct: 61 YRANRLKKVEALRAKGVE 78
Score = 32.3 bits (74), Expect = 0.26
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K KK+ K K+ E++K KE+ K K + +K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 31.5 bits (72), Expect = 0.44
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K KK K K+ ++EK K++ K + + +K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAA 50
Score = 29.6 bits (67), Expect = 2.0
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K KK+ K K+ ++++ K++ K K + +K E + + + KK
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKV 69
Query: 271 EGRR 274
E R
Sbjct: 70 EALR 73
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 35.6 bits (82), Expect = 0.024
Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK-------EKKKKKKKKKEKKK 240
R ++ + + ++ ++E + E + +++++K +K ++ K K +E++
Sbjct: 538 RNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEA 597
Query: 241 KKKEKKKKKEEK 252
K K EK
Sbjct: 598 ALKMKMTDTSEK 609
Score = 33.3 bits (76), Expect = 0.13
Identities = 12/72 (16%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK-------EKKKEKKKKKKKKK 236
R +R ++ E+E + E + +++++K +K ++ K K ++++
Sbjct: 538 RNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEA 597
Query: 237 EKKKKKKEKKKK 248
K K + +K
Sbjct: 598 ALKMKMTDTSEK 609
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 34.3 bits (79), Expect = 0.024
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
EE+K K+ K+K K+KK+KKK+KKKKKKK +K KKK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 33.1 bits (76), Expect = 0.047
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+ KEK K++K+K+KKKKKKKKK KK K+KK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 33.1 bits (76), Expect = 0.061
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K+ K+K K+KK+K+KKKKK++KK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 32.7 bits (75), Expect = 0.079
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
E++K K+ K+K K+K++KKKKKKKK+KK KK KKKK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 32.4 bits (74), Expect = 0.088
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
EE+K K+ K+K K+K++KKK+KKK+KKK KK +KKK
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 32.4 bits (74), Expect = 0.090
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E++K K+ K+K K+KK+KKKK+KKKKKK KK ++KK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 31.2 bits (71), Expect = 0.22
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
EE++ K+ K+K K+K++KK+KKKK+KKK KK KKKK
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.8 bits (70), Expect = 0.32
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ K+K K+KK+++KKK+KKKKK K+ KKK
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.8 bits (70), Expect = 0.33
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+E+K K+ ++K ++KK+KKKKK+KKKKK KK K++K
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.58
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
EE+K ++ ++K ++KK+KKK+KKKK+KK KK KKKK
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.59
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
E++K K+ K+K K+KK++KKKKKK+KKK ++ K+KK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.62
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
EE+K ++ ++K ++KK+KKKK+KKK+KK KK K+KK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.66
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K+ KEK K+K++KKK+KKKKKKK KK K
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAK 132
Score = 29.3 bits (66), Expect = 1.1
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+E+K ++ ++K K+KK+K+KKKKKK+KK K+ KK+K
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 29.3 bits (66), Expect = 1.1
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K+ K+K K++K+KKK++KKK+KK KK +KKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 28.1 bits (63), Expect = 2.8
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E++K K+ K+K ++KK+KKKKKKKK+KK K
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 27.3 bits (61), Expect = 4.6
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
K+ +EK ++KK++KKK+KKK+KK KK +KKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 27.3 bits (61), Expect = 5.5
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+E+K K+ K+K ++KK++KKKKKKKK+K KK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 35.7 bits (82), Expect = 0.025
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
R+ + + K E ++ E +E ++EK ++E KK KK KK + KK +K
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSG 359
Query: 252 KKKEKK-----------KKKKKKEKKKKK 269
+ KK+KE KK++
Sbjct: 360 DDSDDSDIDGEDSVSLVTAKKQKEPKKEE 388
Score = 31.5 bits (71), Expect = 0.57
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ ++ E K + K E ++ E +E +++K +++ KK +K KK + KK
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
Query: 255 EKKKK 259
K
Sbjct: 350 GLDKD 354
Score = 30.7 bits (69), Expect = 0.80
Identities = 14/77 (18%), Positives = 37/77 (48%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
++E +EE+ + +++E K + K + ++ + ++ ++++ +++
Sbjct: 276 DGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLS 335
Query: 253 KKEKKKKKKKKEKKKKK 269
KK KK KK K +K
Sbjct: 336 KKGKKLKKLKGKKNGLD 352
Score = 30.7 bits (69), Expect = 0.94
Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K K +++ +K KR + +E + + +++ +E+ + ++ + K
Sbjct: 247 KLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSP 306
Query: 234 KKKEKKK-KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K + ++ E ++ EE+K E++ KK KK KK +G++
Sbjct: 307 EIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
Score = 29.2 bits (65), Expect = 2.4
Identities = 19/87 (21%), Positives = 37/87 (42%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
K + +E+++ E +K K K K + ++ + K + +E
Sbjct: 180 LMMMKAAKNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEE 239
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K KKK++K + KKK +K K+ +
Sbjct: 240 KSKKKKKKLAKNKKKLDDDKKGKRGGD 266
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 34.1 bits (79), Expect = 0.028
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K+K+KKKKKKK+ E ++KK+K EE+K+++K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 34.1 bits (79), Expect = 0.032
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K+KKKKKKK+K+ + E+KKKK +E+K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 33.3 bits (77), Expect = 0.054
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K++KKKKKKKK+ + ++K+KK E++KE +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 33.3 bits (77), Expect = 0.060
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+K+KKKKKK++ + EEKKK+ +++KE +K D
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDA 119
Score = 32.9 bits (76), Expect = 0.065
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K++KKK+KKKKE + ++KKKK +++K+ +K KK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVP 129
Score = 32.5 bits (75), Expect = 0.088
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
KRKK++++K++E + ++K+KK +E+K+ +K + KK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVP 129
Score = 31.7 bits (73), Expect = 0.18
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K+K+KKK+KKKE + E+KK+K +++KE +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 31.0 bits (71), Expect = 0.30
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K++KKK+KKK++ + ++K+KK +++++ +K + KK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVP 129
Score = 31.0 bits (71), Expect = 0.32
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
KRK+K+KK+++E E ++++KK +E+K+++K + KK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVP 129
Score = 31.0 bits (71), Expect = 0.35
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
+R+K+K+K+KKE E EE+KK+ E++KE +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 30.6 bits (70), Expect = 0.39
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K K + ++KK+KKKK+K+ E ++KKKK +++KE +K + KK
Sbjct: 72 KVPKLNDAYFKRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVP 129
Score = 30.6 bits (70), Expect = 0.44
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
KK++KKK+K+ E +EKKKK E++K+ +K + KK
Sbjct: 84 KKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVP 129
Score = 27.1 bits (61), Expect = 6.9
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K+KKK++KKK++ + ++K+KK E R+
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERK 111
Score = 27.1 bits (61), Expect = 7.4
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+K++KKK+KK+ + E+KKK+ +++K+ +K KK K
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVPLLKG 133
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 34.2 bits (79), Expect = 0.028
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+K+ + ++ +KK K +K K K K+KK K K+ + G
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
Score = 31.9 bits (73), Expect = 0.15
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+++ + K +KK K +K K K+K+KK K K+ E
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
Score = 31.1 bits (71), Expect = 0.26
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K+ + K+ +KK K +K K ++K+K+ K K+ E
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASE 46
Score = 30.8 bits (70), Expect = 0.40
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K+ + K+ +KK K +K K K+K+KK K K
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 30.8 bits (70), Expect = 0.41
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+++ + K+ +KK K +K K K+++KK K K+ +
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
Score = 29.2 bits (66), Expect = 1.5
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K+ + K +K+ K +K K K K+KK K + E
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASE 46
Score = 28.8 bits (65), Expect = 1.7
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+K + K+ KK K +K K K+K+KK + K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 28.4 bits (64), Expect = 2.3
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+K E K+ +KK + +K K K ++KK + K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 28.1 bits (63), Expect = 3.6
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+ + ++ ++K K +K K K K++K K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 27.7 bits (62), Expect = 4.1
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+++ + ++ +KK K K K K+K+KK R
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAA 44
Score = 27.7 bits (62), Expect = 4.3
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+K+ + K+ +KK K +K K K K++K K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 26.9 bits (60), Expect = 8.0
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+++ + K+ +KK K +K K K K++K K K +
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 35.6 bits (82), Expect = 0.028
Identities = 18/79 (22%), Positives = 35/79 (44%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K+ E+K E K E + K+ ++ + + + K ++ EKK + K
Sbjct: 32 KQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNK 91
Query: 254 KEKKKKKKKKEKKKKKDEG 272
+E +K K + +K KK +
Sbjct: 92 EEIEKPKDEPKKPDKKPQA 110
Score = 33.3 bits (76), Expect = 0.13
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
++ +K+ E K E + K+ ++ E + E K ++ +KK + K K
Sbjct: 32 KQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNK 91
Query: 250 EEKKKEKKKKKKKKEK 265
EE +K K + KK +K
Sbjct: 92 EEIEKPKDEPKKPDKK 107
Score = 32.1 bits (73), Expect = 0.30
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+ + E K +K + K+ + K + K+++ +KK + K K+E +
Sbjct: 36 KKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNKEEIE 95
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDE 271
K K+E KK KK + + D+
Sbjct: 96 KPKDEPKKPDKKPQADQPNNVHADQ 120
Score = 32.1 bits (73), Expect = 0.33
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 189 KRKRKKEEEEKEEE--KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+ KK E + E K +K K+ + K + K+++ EKK + K
Sbjct: 32 KQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNK 91
Query: 247 KKKEEKKKEKKKKKKK 262
++ E+ K E KK KK
Sbjct: 92 EEIEKPKDEPKKPDKK 107
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 35.1 bits (81), Expect = 0.029
Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 178 KERRKQRRRKRKR----KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
KE + + +R+ + + +E+E EEE++ + E+++ + E++ + +++ +
Sbjct: 350 KESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESS 409
Query: 234 KKKEKKKKKKEKKKKKEEKKKE 255
+ K K+ + E
Sbjct: 410 SDVGSDSESKADKESASDSDSE 431
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 35.0 bits (81), Expect = 0.030
Identities = 15/91 (16%), Positives = 42/91 (46%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
++ + R+ + + E + + EKK+E++K KK E+ ++K ++ K ++
Sbjct: 60 ELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEI 119
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ ++EK ++ ++ E + +
Sbjct: 120 AEMMRDEKVPIRELEEIPPEFVALYKQEIQS 150
Score = 32.3 bits (74), Expect = 0.24
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 177 KKERRKQRRRKRKR--KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K + R+ + K K E+K EE+K KK E+ E+K +E K ++ +
Sbjct: 63 KFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEIAEM 122
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+++K +E ++ E K++ + +
Sbjct: 123 MRDEKVPIRELEEIPPEFVALYKQEIQSPTR 153
Score = 32.3 bits (74), Expect = 0.25
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 179 ERRKQRRRKRKRKRKKEEEEK-EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
R+ Q R K K + + K EKK E++K KK ++ E +K ++ K ++
Sbjct: 61 LRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIE-RKTQEVKDSGEEI 119
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ + EK +E ++ + K++ +
Sbjct: 120 AEMMRDEKVPIRELEEIPPEFVALYKQEIQSP 151
Score = 31.2 bits (71), Expect = 0.62
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ E + + E K K E + K EKK+E++K KK + E+K + E K
Sbjct: 58 DSELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQ-EVKDSG 116
Query: 256 KKKKKKKKEKKKK 268
++ + +++K
Sbjct: 117 EEIAEMMRDEKVP 129
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 33.2 bits (76), Expect = 0.032
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KEEKK EK ++ + KK KKKKK+ K + K +K +KK++KK E + ++
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEES 60
Query: 264 EKKKKKD 270
++++ +D
Sbjct: 61 KRRRTED 67
Score = 32.4 bits (74), Expect = 0.060
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
KE+KK +K ++ + KK++KKKK+ K + + KK +KK KKK E + +E
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEES 60
Query: 273 RRR 275
+RR
Sbjct: 61 KRR 63
Score = 32.1 bits (73), Expect = 0.071
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 197 EEKEEEKKEEKKKEK--KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EEK+ EK +++ + KK++KKKK K + K KK +KK KKK++ + E+ K
Sbjct: 2 EEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESK 61
Query: 255 EKK 257
++
Sbjct: 62 RRR 64
Score = 30.9 bits (70), Expect = 0.18
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 201 EEKKEEKKKEKKKEK-KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
EEKK EK ++ + KK++KKK++ K + K KK +K+ KKK E + ++ K
Sbjct: 2 EEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESK 61
Query: 260 KKKKE 264
+++ E
Sbjct: 62 RRRTE 66
Score = 30.1 bits (68), Expect = 0.38
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+EKK EK K + KK+K+KKK+ + + K KK +KK KKK + + ++
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEES 60
Query: 272 GRRR 275
RRR
Sbjct: 61 KRRR 64
Score = 29.7 bits (67), Expect = 0.48
Identities = 16/65 (24%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 193 KKEEEEKEEEKKEEK--KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++++ EK +++ + KK++KKK++ K + + KK +KK +KK + E ++ +
Sbjct: 2 EEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESK 61
Query: 251 EKKKE 255
++ E
Sbjct: 62 RRRTE 66
>gnl|CDD|236544 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase;
Reviewed.
Length = 830
Score = 35.1 bits (81), Expect = 0.033
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 166 GDNLE-YGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
G++ E G KG KQ+ +R+ + + ++ ++ + EE K K K ++ + K
Sbjct: 3 GNDREPIGRKGKPSRPVKQKVSRRRYRDDDDYDDYDDYEDEEPMPRKGKGKGRKPRGKRG 62
Score = 31.7 bits (72), Expect = 0.54
Identities = 9/53 (16%), Positives = 27/53 (50%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
G+K + + +++ +R+ +++ ++ + + +E K K K +K + K
Sbjct: 10 GRKGKPSRPVKQKVSRRRYRDDDDYDDYDDYEDEEPMPRKGKGKGRKPRGKRG 62
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 35.1 bits (81), Expect = 0.033
Identities = 21/94 (22%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEE----EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
K++R + + ++ +KE EEK E E KE +E+ +++++ ++++E+ + ++++
Sbjct: 27 KRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERL 86
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+K+E+ + EK E + +E++K +E +
Sbjct: 87 VQKEEQLDARAEKLDNLENQLEEREKALSARELE 120
Score = 33.5 bits (77), Expect = 0.10
Identities = 14/85 (16%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK---KKEKKKEKKKKKKKK 235
++ + + + KE +E ++ ++ + +++E ++E++ +KE++ + + +K
Sbjct: 43 QKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDN 102
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKK 260
E + +++EK E + E+ +K+
Sbjct: 103 LENQLEEREKALSARELELEELEKQ 127
Score = 33.1 bits (76), Expect = 0.13
Identities = 12/88 (13%), Positives = 45/88 (51%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E ++ + + ++ ++ ++EE ++E+++ +KE++ + ++ + + +
Sbjct: 49 KLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLE 108
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E++K ++ + EE +K+ + +
Sbjct: 109 EREKALSARELELEELEKQLDNELYRVA 136
Score = 29.7 bits (67), Expect = 1.8
Identities = 21/105 (20%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEK---KEEKKKEKKK---EKKKEKKKKEKKKEKKK 230
++ER + +R + + +K+E+ + EK E + +E++K ++ E ++ EK+ + +
Sbjct: 73 RREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNEL 132
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ ++ +K K + + +E+K ++ KK +++ E R+
Sbjct: 133 YRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERK 177
Score = 28.9 bits (65), Expect = 3.6
Identities = 13/87 (14%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+KR+R +E E+ ++ +++ +EK + E K+ ++ +++++ ++E+++ ++E
Sbjct: 23 VLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQRE 82
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+++ +KE++ + ++ +++
Sbjct: 83 EERLV---QKEEQLDARAEKLDNLENQ 106
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 34.9 bits (80), Expect = 0.034
Identities = 17/97 (17%), Positives = 44/97 (45%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+ L+ + +KER ++ K + + E E E + KK+E++ + +E +K
Sbjct: 32 ERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEK 91
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
E + E +++K++ + ++ + +E +
Sbjct: 92 EDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNN 128
Score = 33.3 bits (76), Expect = 0.10
Identities = 12/73 (16%), Positives = 35/73 (47%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E + E E E + KK+E++ ++ +E +K+ + + +E+K++ E ++
Sbjct: 56 ESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEEL 115
Query: 255 EKKKKKKKKEKKK 267
+ ++ ++
Sbjct: 116 QYLREYNLFDRNN 128
Score = 32.2 bits (73), Expect = 0.30
Identities = 13/85 (15%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK---EKKKKKKKKKEKKKKKK 243
+ KKEEE +E +E +K++ + + + ++EK++ E+ + ++ +
Sbjct: 70 SELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNL 129
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKK 268
+ + + + + + + +K +K
Sbjct: 130 QLEDNLQSLELQYEYSLNQLDKLRK 154
Score = 30.6 bits (69), Expect = 0.76
Identities = 14/87 (16%), Positives = 40/87 (45%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
++ R K+ K E + E E + E KKE+++ + E+ +K+ + +
Sbjct: 42 EKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELV 101
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ +++K++ E ++ + ++ +
Sbjct: 102 ELQEEKEQLENEELQYLREYNLFDRNN 128
Score = 27.5 bits (61), Expect = 7.3
Identities = 14/79 (17%), Positives = 41/79 (51%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
E + E+E+ K+ K E + + + + + + KK+E++ + ++ +KE+
Sbjct: 35 DSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDD 94
Query: 253 KKEKKKKKKKKEKKKKKDE 271
+ + + ++EK++ ++E
Sbjct: 95 DLDGELVELQEEKEQLENE 113
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 35.2 bits (81), Expect = 0.034
Identities = 16/96 (16%), Positives = 43/96 (44%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
RR+ + + + + E EKE E + K + E +++ K ++ ++ K
Sbjct: 213 RRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILA 272
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + E K E ++E ++ + E+ ++++ +
Sbjct: 273 ETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAE 308
Score = 29.4 bits (66), Expect = 2.4
Identities = 12/87 (13%), Positives = 43/87 (49%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ + K + +R+ E+ E E+ +++K + +++ + K E ++ + +++KE
Sbjct: 273 ETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKE 332
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ + +E+ +++ +++ K
Sbjct: 333 TELEPQERSYFINAAQRQAQEEAKAAA 359
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 34.3 bits (79), Expect = 0.035
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKE-----KKKEKKKEKKKKEKKKEKKKKKKKKK 236
++RR R +R + E+K+EE E+ +KE + +KKEK K + +KE ++ ++
Sbjct: 118 RERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQFLAERD 177
Query: 237 E 237
+
Sbjct: 178 D 178
Score = 28.9 bits (65), Expect = 2.6
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK-----KKKKEKKKKKKEKKKKK 249
EE E + +E + ++ + +KKKE+ EK +K+ + EKK+K K + +K+
Sbjct: 109 EEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKE 168
Query: 250 EEK 252
E+
Sbjct: 169 AEQ 171
Score = 28.2 bits (63), Expect = 4.7
Identities = 15/71 (21%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK---------KKKEK 245
+ ++ E ++ E ++ ++ + +++++ EKKK++ +K +K+ +KKEK
Sbjct: 101 SQADRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEK 160
Query: 246 KKKKEEKKKEK 256
K + K+ E+
Sbjct: 161 TKAQNRKEAEQ 171
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 35.1 bits (80), Expect = 0.036
Identities = 25/69 (36%), Positives = 32/69 (46%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
EE + E KE + K+ K + K+ E KK KE K K KK E K+ K K
Sbjct: 530 EEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPK 589
Query: 261 KKKEKKKKK 269
+E KK K
Sbjct: 590 DPEEPKKPK 598
Score = 28.1 bits (62), Expect = 5.8
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
EY + K + ++ ++ K+ +KK +EE+ + + + E K KE +
Sbjct: 471 EYWTRISKIQFTQEIKKLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGE 530
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK-KKKEKKKKK 269
+ + + ++ + KE K E K+ E KK KE K K
Sbjct: 531 EGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSK 571
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 35.0 bits (80), Expect = 0.037
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++ E+E +E++++ KK ++ E+ K ++ KE + KKKK KK KE K+ + + K K
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKP 267
Query: 251 EKKKEKKKKKKKK 263
++ K K++
Sbjct: 268 LWTRDPKDVTKEE 280
Score = 33.5 bits (76), Expect = 0.11
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK---KEKKKEKKKKEKKKEKKK 230
K + E + RR K K+ E + E EK EK+ ++++ KK E +E K
Sbjct: 176 KEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKV 235
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++ K+ ++ KKKK KK K+ K+ E + K K + KD
Sbjct: 236 EEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKD 275
Score = 32.0 bits (72), Expect = 0.40
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K K+ + + KK +E+ EE K EE K+ + +KKK KK KE KE + + K K
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKP 267
Query: 237 EKKKKKKEKKKKK 249
+ K+ K++
Sbjct: 268 LWTRDPKDVTKEE 280
Score = 32.0 bits (72), Expect = 0.41
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K K +E+E++ +K +E +E K E+ KE + +KKK KK K+ K+ + + K +
Sbjct: 209 KTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPL 268
Query: 247 KKKEEKKKEKKK 258
++ K K++
Sbjct: 269 WTRDPKDVTKEE 280
Score = 31.2 bits (70), Expect = 0.66
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +KE + K+ + EE K EE KE + +KKK KK ++ KE + + K K
Sbjct: 209 KTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPL 268
Query: 234 KKKEKKKKKKEK 245
++ K KE+
Sbjct: 269 WTRDPKDVTKEE 280
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 34.9 bits (80), Expect = 0.038
Identities = 15/66 (22%), Positives = 24/66 (36%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
R+ E + ++ K+ KK + K K K KK KKK + +
Sbjct: 127 REMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPR 186
Query: 252 KKKEKK 257
K + K
Sbjct: 187 SKPDWK 192
Score = 34.5 bits (79), Expect = 0.042
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K+ K+ KK + K K + KK KK+ K + K + K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 33.3 bits (76), Expect = 0.095
Identities = 18/65 (27%), Positives = 22/65 (33%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E E + KE KK KK + K K K KK K+K K +
Sbjct: 128 EMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRS 187
Query: 256 KKKKK 260
K K
Sbjct: 188 KPDWK 192
Score = 32.2 bits (73), Expect = 0.25
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E K+ KK KK + + K K KK KK+ + K + + K D
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 31.8 bits (72), Expect = 0.30
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++ K+ KK + K K K KK +KK + K K K ++
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQD 195
Score = 31.0 bits (70), Expect = 0.62
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KE KK KK + K K + KK K++ + K + K +
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 29.9 bits (67), Expect = 1.5
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++ K+ KK + K K K K+ KKK + K K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 29.5 bits (66), Expect = 1.6
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+ KK +K + K K K +K K+K + K D +
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKP 189
Score = 29.5 bits (66), Expect = 1.8
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KE KK KK + K + K KK KKK + K + K K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKS 193
Score = 28.7 bits (64), Expect = 3.1
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+ +E K+ KK + K K K KK KKK + K + + K ++
Sbjct: 139 TAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQD 195
Score = 28.3 bits (63), Expect = 4.2
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K +K KK + K + + KK +KK K + K K ++
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQD 195
Score = 28.3 bits (63), Expect = 4.2
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ +E KK KK + K K + KK KKK + K + + K + K ++
Sbjct: 138 STAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQD 195
Score = 27.5 bits (61), Expect = 7.6
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K+ KK K+ + K K K ++ KK+ + + +
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKP 189
Score = 27.5 bits (61), Expect = 7.7
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
E K+ KK KK + + K K KK KK+
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSV 178
>gnl|CDD|152754 pfam12319, TryThrA_C, Tryptophan-Threonine-rich plasmodium antigen
C terminal. This protein is found in eukaryotes.
Proteins in this family are typically between 254 to 536
amino acids in length. This family is the C terminal of
a surface antigen of malarial Plasmodium species. It is
currently being targeted for use as part of a subunit
vaccine against Plasmodium falciparum, the main species
involved in causing human malaria.
Length = 217
Score = 34.2 bits (79), Expect = 0.039
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK------KKKEEKKKEK 256
+ K++E + +K EKKK K KKKK K K++ +EK+ K+KE+
Sbjct: 121 MSDWKREEDEYWEKWEKKKWSKPLNLKKKKNWLKWKERINREKEEWNNWVKEKEKLYINN 180
Query: 257 KKKKKKKEKKKKKDE 271
K K +K K K +
Sbjct: 181 KWDKWEKWKNDKYNL 195
>gnl|CDD|233034 TIGR00584, mug, mismatch-specific thymine-DNA glycosylate (mug).
All proteins in this family for whcih functions are
known are G-T or G-U mismatch glycosylases that function
in base excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University). Used 2pf model [DNA metabolism,
DNA replication, recombination, and repair].
Length = 328
Score = 34.6 bits (79), Expect = 0.039
Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E++EE K +E +E K K+K + + + E KK KK K K K
Sbjct: 32 ALVEEQEETSGVPAKAPTQEPSEEAPKFRKRKPRSNEPYRPVEPKKPSDSKKSGKSTKSK 91
Query: 255 EKKKKKKKKEKKKKK 269
EK++K K K K+K
Sbjct: 92 EKQEKITDKFKVKRK 106
Score = 32.3 bits (73), Expect = 0.22
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ RKRK + + E +K + KK K K KEK++K K K K+K + +
Sbjct: 57 PKFRKRKPRSNEPYRPVEPKKPSDSKKSGKSTKSKEKQEKITDKFKVKRKVDRFNGVSE 115
Score = 27.3 bits (60), Expect = 8.2
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ +E ++ K +++K + + E KK KK K K K+K+EK K + K
Sbjct: 45 AKAPTQEPSEEAPKFRKRKPRSNEPYRPVEPKKPSDSKKSGKSTKSKEKQEKITDKFKVK 104
Query: 254 KEKKKKKKKKE 264
++ + E
Sbjct: 105 RKVDRFNGVSE 115
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 34.7 bits (80), Expect = 0.040
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+K+EE KK+ K E++ K K K+ KKK
Sbjct: 271 DKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 31.6 bits (72), Expect = 0.35
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
K KEEE K++ K E + K K K+ K+K
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 29.6 bits (67), Expect = 1.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
K +K++E KK+ K E++ K K K+ KK+
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 28.1 bits (63), Expect = 5.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K+E+ KK+ K E++ K K K+ +KK
Sbjct: 272 KEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 27.3 bits (61), Expect = 8.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
K +K++E KK+ K + + K K K KKK
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 33.9 bits (78), Expect = 0.044
Identities = 22/89 (24%), Positives = 45/89 (50%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
KK +KR+++ ++ +KE + KE K ++ K + + K + + KK+K
Sbjct: 39 SPQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKL 98
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
KK+++ EK + E ++E+K +K
Sbjct: 99 VNAFNKKQQEYEKDLNRREAEEEQKLLEK 127
Score = 32.8 bits (75), Expect = 0.089
Identities = 22/96 (22%), Positives = 50/96 (52%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K + + ++++K +K ++E K +E K + + + + K + E KKEK
Sbjct: 43 KKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAF 102
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KK+++ +K +++ EE++K +K ++ E +K
Sbjct: 103 NKKQQEYEKDLNRREAEEEQKLLEKIQRAIESVAEK 138
Score = 32.8 bits (75), Expect = 0.11
Identities = 22/87 (25%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK-KEKKKKEKKKEKKKKKKKKKEK 238
+ K+ + + KK ++E ++ +KE K KE K + K + ++ K + + KK+K
Sbjct: 41 QAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVN 100
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEK 265
KK+++ +K+ ++E ++++K EK
Sbjct: 101 AFNKKQQEYEKDLNRREAEEEQKLLEK 127
Score = 31.2 bits (71), Expect = 0.34
Identities = 17/67 (25%), Positives = 38/67 (56%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ + K+++KE +K +K+ + K+ K + K + ++ K + E KKEK K++++
Sbjct: 50 ESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAFNKKQQEY 109
Query: 269 KDEGRRR 275
+ + RR
Sbjct: 110 EKDLNRR 116
Score = 30.4 bits (69), Expect = 0.58
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 191 KRKKEEEEKEEEKK---EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK-- 245
+ KK + E E K +E +K +K+ K KE K ++ K + + K E + KK++
Sbjct: 41 QAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVN 100
Query: 246 --KKKKEEKKKEKKKKKKKKEKK 266
KK++E +K+ +++ ++E+K
Sbjct: 101 AFNKKQQEYEKDLNRREAEEEQK 123
Score = 30.1 bits (68), Expect = 0.79
Identities = 18/89 (20%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ +K + E +++++E ++ +K+ K KE K + K + + K + + +K+K
Sbjct: 40 PQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLV 99
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KK++E +K+ +++ +E++K ++
Sbjct: 100 NAFNKKQQEYEKDLNRREA-EEEQKLLEK 127
Score = 28.1 bits (63), Expect = 3.3
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ KK E + KK++K+ +K +K+ + K+ K + + K + R +
Sbjct: 41 QAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAK 88
Score = 27.0 bits (60), Expect = 7.3
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ +K + + E KK++K+ ++ +K+ K K+ K ++ K + + K + + K E
Sbjct: 40 PQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLV 99
Query: 275 R 275
Sbjct: 100 N 100
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 34.3 bits (79), Expect = 0.050
Identities = 27/93 (29%), Positives = 51/93 (54%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
Y+ K++R + R K + E E+ E+K++ ++E++ +K KE +KE +
Sbjct: 91 EYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDA 150
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
KK +E +K K+ K + E KKK ++ +K +E
Sbjct: 151 KKALEENEKLKELKAEIDELKKKAREIHEKIQE 183
Score = 33.5 bits (77), Expect = 0.087
Identities = 25/91 (27%), Positives = 49/91 (53%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
E + + RK+ +E EE + KK ++ E+ + + + ++ EKK K +
Sbjct: 189 QEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
KEK K++EK+++ +E+ +E +K K+ EK
Sbjct: 249 AKEKAAKRREKREELKERAEEIYEKFKRGEK 279
Score = 29.6 bits (67), Expect = 1.7
Identities = 25/98 (25%), Positives = 52/98 (53%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ ++ R+ R+ K K+ E + ++E ++ +KK++ +E+++ +K KE
Sbjct: 83 AKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKE 142
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K+ ++ KK EE +K K+ K + E KKK E +
Sbjct: 143 LRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEK 180
Score = 29.3 bits (66), Expect = 2.2
Identities = 17/81 (20%), Positives = 44/81 (54%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ ++E ++ E+ E K+ + ++ + + + +E +KK K + K+K K ++
Sbjct: 199 FEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRRE 258
Query: 247 KKKEEKKKEKKKKKKKKEKKK 267
K++E K++ ++ +K K +K
Sbjct: 259 KREELKERAEEIYEKFKRGEK 279
Score = 28.5 bits (64), Expect = 3.7
Identities = 19/76 (25%), Positives = 46/76 (60%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E E K ++ KEE ++ K+K + K+ E +++ + K +E ++K +E +++++E
Sbjct: 9 DELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEIN 68
Query: 254 KEKKKKKKKKEKKKKK 269
+E ++ K+K+++ K
Sbjct: 69 EEVQELKEKRDEINAK 84
Score = 28.1 bits (63), Expect = 4.5
Identities = 17/78 (21%), Positives = 44/78 (56%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+++ EE + +K +E +E + + + ++ ++K K + K+K K ++K+++ K+
Sbjct: 206 RKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKE 265
Query: 247 KKKEEKKKEKKKKKKKKE 264
+ +E +K K+ +K E
Sbjct: 266 RAEEIYEKFKRGEKLTTE 283
Score = 28.1 bits (63), Expect = 5.2
Identities = 18/92 (19%), Positives = 47/92 (51%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R K + + E+K++ ++E++ +K ++ +KE + KK ++ +K K+
Sbjct: 103 NLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKE 162
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + + KK+ ++ +K ++ E ++ +E
Sbjct: 163 LKAEIDELKKKAREIHEKIQELANEAQEYHEE 194
Score = 27.7 bits (62), Expect = 6.0
Identities = 18/79 (22%), Positives = 46/79 (58%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
++ +E ++E + ++ + +K E ++ + + + ++ +KK K + KEK K+ EK
Sbjct: 200 EEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREK 259
Query: 253 KKEKKKKKKKKEKKKKKDE 271
++E K++ ++ +K K+ E
Sbjct: 260 REELKERAEEIYEKFKRGE 278
Score = 27.3 bits (61), Expect = 8.2
Identities = 19/95 (20%), Positives = 51/95 (53%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K++R + R+ + K++E + + EK +E ++E+ + ++ ++ KEK+ + K
Sbjct: 26 KEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKL 85
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ +K+ + K+K + + K E++ ++ E
Sbjct: 86 QELRKEYRELKEKRNEFNLGGRSIKSLEREIERLE 120
Score = 27.3 bits (61), Expect = 8.5
Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
D L+ K+ + + K KR ++E + EK++E + ++ ++K ++ +E++
Sbjct: 6 DKLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERD 65
Query: 227 EKKKKKKKKKEKKKKKKEK-----KKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
E ++ ++ KEK+ + K K+ +E K+K + + K + E R
Sbjct: 66 EINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIER 118
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 33.8 bits (78), Expect = 0.052
Identities = 18/82 (21%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK-KK 247
K +K EE EE +E +K E+++ +++E +++ + +E++++ + + + ++ K+K +
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLR 61
Query: 248 KKEEKKKEKKKKKKKKEKKKKK 269
+ E + +K+ ++++E+ KK
Sbjct: 62 AQAEFENLRKRTEREREEAKKY 83
Score = 33.5 bits (77), Expect = 0.075
Identities = 18/75 (24%), Positives = 46/75 (61%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+ + +E E+ EEE+ EE++ E++ E ++E+++ + + + ++ K K + + + E
Sbjct: 9 EEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFEN 68
Query: 246 KKKKEEKKKEKKKKK 260
+K+ E+++E+ KK
Sbjct: 69 LRKRTEREREEAKKY 83
Score = 31.1 bits (71), Expect = 0.39
Identities = 17/81 (20%), Positives = 49/81 (60%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
K ++ + + EE EE +K E+++ +++E ++E + +E+++E + + + +E K K
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRA 62
Query: 246 KKKKEEKKKEKKKKKKKKEKK 266
+ + E +K ++++++ +K
Sbjct: 63 QAEFENLRKRTEREREEAKKY 83
Score = 28.1 bits (63), Expect = 4.2
Identities = 9/80 (11%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+++++ ++ + ++ ++ EK +E++ +E++ E++ + ++++++ + + + ++ ++K
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRA 62
Query: 257 K------KKKKKKEKKKKKD 270
+ +K+ ++E+++ K
Sbjct: 63 QAEFENLRKRTEREREEAKK 82
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 33.4 bits (77), Expect = 0.053
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK-----KEKKKKKKEKKKKKEEKKKEKK 257
KK +K K E E + K K +K K K++ KK +KKE+
Sbjct: 93 KKRKKSKLVYDEATGEWVPRWGYKRANKDLEKDWIIEVKPNDDPKEDPFAKKRREKKERV 152
Query: 258 KKKKKKEKKKKK 269
K +K+E K KK
Sbjct: 153 AKNEKRELKNKK 164
Score = 33.0 bits (76), Expect = 0.068
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK------KEKKKEKKKKKKKKKEK 238
++K +KRKK + +E E + K K+ +K K K+ KK+ +
Sbjct: 88 KKKGIKKRKKSKLVYDEATGEWVPRWGYKRANKDLEKDWIIEVKPNDDPKEDPFAKKRRE 147
Query: 239 KKKKKEKKKKKEEKKK 254
KK++ K +K+E K K
Sbjct: 148 KKERVAKNEKRELKNK 163
Score = 31.1 bits (71), Expect = 0.39
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK------KKKKKEKKKKKEE 251
EK +KK KK++K K E + + K+ K EK K K+ +
Sbjct: 84 EKFAKKKGIKKRKKSKLVYDEATGEWVPRWGYKRANKDLEKDWIIEVKPNDDPKEDPFAK 143
Query: 252 KKKEKKKKKKKKEKKKKKDE 271
K++EKK++ K EK++ K++
Sbjct: 144 KRREKKERVAKNEKRELKNK 163
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 33.9 bits (78), Expect = 0.054
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKK-----KEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
E E+KK KK+ K KK + + ++K + K
Sbjct: 148 RTEILAEKKKPRSKKKSSKNSKKLRIDLVGEWLSTAISPPDSSPVSLDAREKLRAYLPKW 207
Query: 250 EEKKKEKKKKKKKKEKKKKKDEG 272
E K K KK K+ K+ K D G
Sbjct: 208 EGKTKNKKSLKEYKDLIKLLDSG 230
Score = 27.7 bits (62), Expect = 5.4
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKK-----------KEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ E E++K KKK K KK + ++K + K
Sbjct: 148 RTEILAEKKKPRSKKKSSKNSKKLRIDLVGEWLSTAISPPDSSPVSLDAREKLRAYLPKW 207
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ K K K K ++ K K K D
Sbjct: 208 EGKTKNK--KSLKEYKDLIKLLDSGKLD 233
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 33.9 bits (78), Expect = 0.056
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K+ KE+K K K + K +K+++K K+EKK K EK+K +++
Sbjct: 68 KKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
Score = 30.8 bits (70), Expect = 0.50
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
+ +KEEKK K+EKK K +KEK +E+
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
Score = 30.0 bits (68), Expect = 1.2
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 203 KKEEKKKEKKKEKKKEK---KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
KK K+EK K K + + +K++KK K++KK K +K++ +++
Sbjct: 68 KKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
Score = 27.7 bits (62), Expect = 6.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
K ++EEK+ KEEKK K +++K E++
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
Score = 27.3 bits (61), Expect = 8.0
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ KK K+EK K K + K ++E+KK K++KK K +K+
Sbjct: 65 KDFKKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKL 119
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 33.1 bits (76), Expect = 0.056
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 214 EKKKEKKKKEKKKEKKKKKKK--KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E + K + + ++EK + +KE K ++++ K +K+ KK KK + +
Sbjct: 69 EDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQ 128
Query: 272 G 272
G
Sbjct: 129 G 129
Score = 32.4 bits (74), Expect = 0.085
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
E + K + + +++K + +K+ K ++EE +K +K+ KK K+ +
Sbjct: 69 EDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 32.4 bits (74), Expect = 0.098
Identities = 11/57 (19%), Positives = 30/57 (52%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+++ K K + + E++K + +K+ K ++E+ +K +++ K+ KK +
Sbjct: 69 EDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 32.4 bits (74), Expect = 0.11
Identities = 10/61 (16%), Positives = 31/61 (50%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+E++ + K + + +++K + +++ K +++E +K +K KK K+ +
Sbjct: 68 DEDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPV 127
Query: 255 E 255
+
Sbjct: 128 Q 128
Score = 32.4 bits (74), Expect = 0.11
Identities = 12/59 (20%), Positives = 28/59 (47%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
++ K K + +++K + +K+ + ++E+ +K +K+ KK KK E
Sbjct: 68 DEDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEP 126
Score = 31.2 bits (71), Expect = 0.24
Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 193 KKEEEEKEEEKKEEKKK-----EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+ K + E++K + +++ K ++E+ +K +K+ +K KK +
Sbjct: 70 DDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPV 127
Score = 31.2 bits (71), Expect = 0.27
Identities = 11/60 (18%), Positives = 29/60 (48%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+E + + + E ++EK + +K+ K ++++ +K +K+ KK +K +
Sbjct: 68 DEDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPV 127
Score = 31.2 bits (71), Expect = 0.28
Identities = 8/60 (13%), Positives = 27/60 (45%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+ + + + + ++EK + K+ K ++++ ++ +K+ K+ KK +
Sbjct: 68 DEDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPV 127
Score = 27.7 bits (62), Expect = 3.9
Identities = 8/58 (13%), Positives = 29/58 (50%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+E+ + K + + ++++ + +K+ K ++++ K +K+ +K K+ +
Sbjct: 68 DEDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 27.0 bits (60), Expect = 7.4
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
+ EE++ E ++E K ++E+ ++ +K+ KK +K +
Sbjct: 86 HTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 34.4 bits (78), Expect = 0.056
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E + + E EK K +E+++ +K+++ KK K K+KK+ +K KK + +
Sbjct: 425 ESDDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIER 484
Query: 256 KKKKKKKKEKKKKKDE 271
K++ E K DE
Sbjct: 485 TAASKEELELIKADDE 500
Score = 33.2 bits (75), Expect = 0.15
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK-- 233
+K RK R R+ RK ++ ++ K++ + K K++ KK +K K ++ K++
Sbjct: 434 IEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEELE 493
Query: 234 --KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K ++ ++ + K K EK KK +K +KK E
Sbjct: 494 LIKADDEDDEQLDHFDMKSILKAEKFKKNRKLKKKASNLE 533
Score = 31.3 bits (70), Expect = 0.57
Identities = 24/96 (25%), Positives = 49/96 (51%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K R++ R++R+ K+ K++ + + + K+E +K K+ K ++ KE+ + K
Sbjct: 440 KLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEELELIKADD 499
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
E ++ K K ++ KK +K K+K +EG
Sbjct: 500 EDDEQLDHFDMKSILKAEKFKKNRKLKKKASNLEEG 535
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 33.7 bits (77), Expect = 0.058
Identities = 18/78 (23%), Positives = 39/78 (50%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
++ +++ +EE E KKE K+ K+E ++K+ E +K+ + K K E K
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDKY 62
Query: 248 KKEEKKKEKKKKKKKKEK 265
+ + + + + + KE+
Sbjct: 63 LRSQAEIQNMQNRYAKER 80
Score = 31.3 bits (71), Expect = 0.37
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K+E EK +++ + KK+ K+ KE+ ++K+ + E++ + K K K E K
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDK 61
Score = 27.9 bits (62), Expect = 4.4
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K+E +K +E+ + KK+ KE K+E ++K+ E +K+
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKE 47
Score = 27.1 bits (60), Expect = 8.7
Identities = 12/59 (20%), Positives = 32/59 (54%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KE+ +K +++ + KK+ ++ K+++++K+ + EK+ K + K +D+
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDK 61
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 33.0 bits (76), Expect = 0.060
Identities = 23/71 (32%), Positives = 47/71 (66%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
R ++ EE + ++E+K+KEKKK+KKKE + + + ++KKK+++ + KK +E
Sbjct: 58 RGGRKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEED 117
Query: 246 KKKKEEKKKEK 256
K++ E+ K+++
Sbjct: 118 KERVEKMKEKR 128
Score = 28.0 bits (63), Expect = 2.5
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 13/58 (22%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKK---------KKKKE----KKKKKEEKKKEKKKKKKK 262
K +E+KKEK+KKKKKKKE + KKK+E KK +E+K++ +K K+K+
Sbjct: 71 GKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDKERVEKMKEKR 128
Score = 27.2 bits (61), Expect = 5.5
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 9/73 (12%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKK-------KEKKKEKKKEKKKKEKKK 226
+GG+K + + +K+E+EK+++KK+E + +EKKKE++ + K K +
Sbjct: 58 RGGRKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLK--KFE 115
Query: 227 EKKKKKKKKKEKK 239
E K++ +K KEK+
Sbjct: 116 EDKERVEKMKEKR 128
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 34.7 bits (80), Expect = 0.061
Identities = 15/80 (18%), Positives = 33/80 (41%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+ + + + E + K K+ ++ E K+ ++ K E K KKE + ++
Sbjct: 948 IEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQ 1007
Query: 252 KKKEKKKKKKKKEKKKKKDE 271
++ K+ KE + E
Sbjct: 1008 YGALQESTKQLKELPVEVAE 1027
Score = 33.9 bits (78), Expect = 0.090
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKE---KKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ + E + E + + K+ ++ E KK +E K + K KKE + K+
Sbjct: 948 IEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQ 1007
Query: 245 KKKKKEEKKKEKKKKKKKKEKKK 267
+E K+ K+ + E +
Sbjct: 1008 YGALQESTKQLKELPVEVAELQS 1030
Score = 32.7 bits (75), Expect = 0.24
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE-KKKKKEEK 252
+E E K E K + E K ++ +E + KK +E K E K KKE
Sbjct: 943 EEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELA 1002
Query: 253 KKEKKKKKKKKEKKKKKDEGR 273
+ K+ ++ K+ K+
Sbjct: 1003 ELSKQYGALQESTKQLKELPV 1023
Score = 32.0 bits (73), Expect = 0.43
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK---KKKKKKKEKKKKKKEK 245
K+ + E+ + K E K + E K KE +E + KK + K +
Sbjct: 934 KKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSE 993
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K +++ E K+ ++ K+ +
Sbjct: 994 LKNFKKELAELSKQYGALQESTKQLKELPV 1023
Score = 29.3 bits (66), Expect = 2.5
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 1/99 (1%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K R + + KKE E ++ ++ K+ K+ + E + K
Sbjct: 979 KSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQL-KELPVEVAELQSASKIISS 1037
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+ E K +K K + + + + K K +++
Sbjct: 1038 ESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENS 1076
Score = 29.3 bits (66), Expect = 2.7
Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 167 DNLEYGYK--GGKKERRKQR-RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
++Y K K + RK R + +K ++ +KK ++ E+ +
Sbjct: 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKR---EKKLRETEEVEFS 841
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKK----EEKKKEKKKKKKKKEKKK 267
K E +K + K KK+ KK+ + ++ + +++ +E K
Sbjct: 842 LKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKI 889
Score = 27.7 bits (62), Expect = 8.0
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK- 235
++ + + K K E E E E KK + + K E KK
Sbjct: 882 RQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNID 941
Query: 236 -KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK----KKKDEGRRR 275
+E + K + + + + K K+ E+ KK R
Sbjct: 942 LEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVRE 986
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 34.5 bits (79), Expect = 0.061
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K KK K K +++K+ + KK K + + K E K K+K K
Sbjct: 6 KATKKFTKNHLKNTIDRRKQL--ARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKL 63
Query: 268 KKDE 271
D
Sbjct: 64 YSDV 67
Score = 34.1 bits (78), Expect = 0.075
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEK-KKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+RRKQ R +K K E K E K ++K K + ++++
Sbjct: 19 TIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDVDSSSSEEEEDG 78
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E K KK + +K +K+ +
Sbjct: 79 SESISKLNVNSKKISLNQVSTQKWRKELD 107
Score = 33.7 bits (77), Expect = 0.11
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK-EKKKEKKKKKKKKKEKKKKKKE 244
+K + K ++ ++ KK K + + K E K K+K K +
Sbjct: 9 KKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDVD 68
Query: 245 KKKKKEEKKKEKKKKKKKKEKKK 267
+EE+ + K KK
Sbjct: 69 SSSSEEEEDGSESISKLNVNSKK 91
Score = 33.3 bits (76), Expect = 0.13
Identities = 18/91 (19%), Positives = 32/91 (35%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ RRK+ + KK K E K E + K+K K +E++
Sbjct: 17 KNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDVDSSSSEEEE 76
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ K KK + ++ +K+ D
Sbjct: 77 DGSESISKLNVNSKKISLNQVSTQKWRKELD 107
Score = 32.6 bits (74), Expect = 0.23
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK-KKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K KK K K ++K+ + KK K + + K E K KEK K
Sbjct: 6 KATKKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYS 65
Query: 263 KEKKKKKDE 271
+E
Sbjct: 66 DVDSSSSEE 74
Score = 30.6 bits (69), Expect = 0.89
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K K KK K + +++K+ + K+ K + + + K KEK K
Sbjct: 3 KASKATKKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSK 62
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 34.0 bits (78), Expect = 0.061
Identities = 19/91 (20%), Positives = 49/91 (53%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE +QRR+ + + +EE +E +E+ E ++E ++E + E++ + K +
Sbjct: 122 KELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEA 181
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ + + +++++ E+ +E K K +E++
Sbjct: 182 EARGRAKEERENEDINREMLKLKANEERETV 212
Score = 31.7 bits (72), Expect = 0.39
Identities = 16/102 (15%), Positives = 59/102 (57%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Y+ + + + +R R +R+K +E+ +++++ + + + +K+ +K+ E+++ + ++
Sbjct: 75 YEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQRRQNEEL 134
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K +E+ ++E ++ E++ + +++ +E+ + + E R
Sbjct: 135 LKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIR 176
Score = 29.7 bits (67), Expect = 1.6
Identities = 14/97 (14%), Positives = 58/97 (59%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
++ +++ + + + RK+ ++E E+++++ ++ K +E+ +++ ++ +++ + ++E
Sbjct: 103 QQEQQRAQYQDELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRE 162
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+++ E +++ K E + + + KE+++ +D R
Sbjct: 163 TIEEEAELERENIRAKIEAEARGRAKEERENEDINRE 199
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 34.0 bits (78), Expect = 0.063
Identities = 13/73 (17%), Positives = 26/73 (35%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ K EE ++K ++ + K++ K+ + E K+ K+KK
Sbjct: 52 RDKFDSLAEEPRVLRKEKYNITRKTTGKNDLPKEEDSSLPSSKETENGDTEGKETDKKKK 111
Query: 247 KKKEEKKKEKKKK 259
K +K
Sbjct: 112 SSTISKNSPSGEK 124
Score = 28.6 bits (64), Expect = 3.6
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ + R K + EE + K+K K K K+++ K+ E +
Sbjct: 43 RFKDNNDLIRDKFDSLAEEPRVLRKEKYNITRKTTGKNDLPKEEDSSLPSSKETENGDTE 102
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KE KKKK K G +
Sbjct: 103 G----------KETDKKKKSSTISKNSPSGEK 124
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 34.5 bits (79), Expect = 0.064
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
++ K EK +K+ K EK K K+K K E+ K + KK++ EEK
Sbjct: 716 KKGVPPKPAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSC 775
Query: 257 KKKKKKKEKKKKKDEGRRR 275
++ R+
Sbjct: 776 SPSSSSSHHHSSSNKESRK 794
Score = 33.4 bits (76), Expect = 0.14
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ +K+ +++ + EK K K K K +++ +K + KK++ E+K
Sbjct: 720 PPKPAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSS 779
Query: 248 KKEEKKKEKKKKKKKKEKKKKKD 270
K+ +K + K+++
Sbjct: 780 SSSHHHSSSNKESRKSSRNKEEE 802
Score = 28.7 bits (64), Expect = 4.5
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK-EKKKEKKKKEKKKEKKKKKKK 234
K K + KK+ + EK K K K K +++ +K + +K++ ++K
Sbjct: 716 KKGVPPKPAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSC 775
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKK 261
KE +K + K+++
Sbjct: 776 SPSSSSSHHHSSSNKESRKSSRNKEEE 802
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 34.0 bits (78), Expect = 0.068
Identities = 12/80 (15%), Positives = 37/80 (46%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ ++ + K + K E + +E+ +KE + +++++ + +K ++
Sbjct: 337 AQYGESFQEWRSKLQALAKVESRSLLSVEERLPTIEKEDLELYEQRQQLWFFENRKLWQR 396
Query: 241 KKKEKKKKKEEKKKEKKKKK 260
KKK +++ EE ++ +
Sbjct: 397 KKKLREQADEEYQQRHATRA 416
Score = 32.0 bits (73), Expect = 0.29
Identities = 12/58 (20%), Positives = 30/58 (51%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
R +R +KE+ E E++++ E +K +++KK +E+ E+ +++ +
Sbjct: 359 RSLLSVEERLPTIEKEDLELYEQRQQLWFFENRKLWQRKKKLREQADEEYQQRHATRA 416
Score = 30.5 bits (69), Expect = 0.92
Identities = 9/71 (12%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ + + + R EE +KE+ + +++++ + + K ++KKK +++ +
Sbjct: 347 RSKLQALAKVESRSLLSVEERLPTIEKEDLELYEQRQQLWFFENR-KLWQRKKKLREQAD 405
Query: 238 KKKKKKEKKKK 248
++ +++ +
Sbjct: 406 EEYQQRHATRA 416
Score = 29.0 bits (65), Expect = 3.0
Identities = 12/88 (13%), Positives = 41/88 (46%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K++ + + ++ + + K E + +E+ +K++ + +++++
Sbjct: 329 KQKFEPLLAQYGESFQEWRSKLQALAKVESRSLLSVEERLPTIEKEDLELYEQRQQLWFF 388
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E +K + KKK +E+ +E +++ +
Sbjct: 389 ENRKLWQRKKKLREQADEEYQQRHATRA 416
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 33.2 bits (76), Expect = 0.068
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 195 EEEEKEEEKKEEK--KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ E K E KEEK K KK+K + KK KK + +KK + + + EKK +
Sbjct: 98 QAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAA 157
Query: 253 KKEKKKKKKKKE 264
++ ++E
Sbjct: 158 VAAEEAAAAEEE 169
Score = 32.4 bits (74), Expect = 0.14
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 197 EEKEEEKKEEKKKEK--KKEKKKEKKKKEKKKEKKKK-KKKKKEKKKKKKEKKKKKEEKK 253
E + E K E K+EK K KK+K K KK KK + +KK + + + +KK +
Sbjct: 96 EAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEA 155
Query: 254 KEKKKKKKKKEKKKKKDE 271
++ ++++ +E
Sbjct: 156 AAVAAEEAAAAEEEEAEE 173
Score = 32.1 bits (73), Expect = 0.22
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKK----EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K+E+E K KK++ K KK KK EKK E + E +KK + +E
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAA 166
Query: 249 KEEKKKEKKKKKKKKEKKK 267
+EE+ +E ++ E+
Sbjct: 167 EEEEAEEAPAEEAPAEESA 185
Score = 29.4 bits (66), Expect = 1.6
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+++ + KK KK + EKK + + E EKK + ++ ++++ EE E
Sbjct: 118 KDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAE 177
Query: 256 KKKKKKKKE 264
+ ++ E
Sbjct: 178 EAPAEESAE 186
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 34.3 bits (78), Expect = 0.068
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 175 GGKKERRKQRRRKRKRKRKKEE---EEKEEEKKEEKKKEKKKEKKKEKKKK 222
K +K+ K KR+ E+ EE+E EK++EK++E+++E++ E+ K
Sbjct: 573 ASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 34.3 bits (78), Expect = 0.079
Identities = 16/46 (34%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+KR+ +K + E E++ +EE+++EK+KEK++E +++E++ E+ K
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKERE-REREREAERAAK 623
Score = 33.1 bits (75), Expect = 0.15
Identities = 16/57 (28%), Positives = 38/57 (66%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K+ E+ EK K + ++K +E++++EK+KEK++++++++E ++ K E + E
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSE 635
Score = 32.7 bits (74), Expect = 0.25
Identities = 13/45 (28%), Positives = 34/45 (75%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+KR+ E+ ++E E+K +++E++KEK+KE++++ +++ ++ K
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 32.4 bits (73), Expect = 0.31
Identities = 15/57 (26%), Positives = 38/57 (66%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K KK+E+ EK K++ ++K ++++++EK+K+KE +++ +++ ++ + E R
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESR 632
Score = 31.6 bits (71), Expect = 0.47
Identities = 13/45 (28%), Positives = 36/45 (80%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K KK+E+ EK K+E +++ +++++++KEK+K+++ +++++ E+
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 31.6 bits (71), Expect = 0.49
Identities = 13/48 (27%), Positives = 37/48 (77%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K KK+E+ ++ K+E ++K ++++E++K+K+++++++ E++ E+ K
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 30.4 bits (68), Expect = 1.1
Identities = 16/51 (31%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K K+ EE E+ K E +++ ++E+++E KEK+KE++++++++ E+ K
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREERERE---KEKEKEREREREREAERAAK 623
Score = 30.4 bits (68), Expect = 1.2
Identities = 11/45 (24%), Positives = 35/45 (77%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KK+++ EK K++ E+K ++E +++++K+K++++E++++ + +
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 28.9 bits (64), Expect = 3.6
Identities = 12/45 (26%), Positives = 35/45 (77%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K KK+E+ EK K + +++ ++E++++K+K+KE++++++ + ++
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 28.9 bits (64), Expect = 3.7
Identities = 13/41 (31%), Positives = 31/41 (75%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K KK+++ +K K+E ++K +++++++KEK+K+++ R R
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKERERERER 616
Score = 28.1 bits (62), Expect = 6.7
Identities = 13/45 (28%), Positives = 32/45 (71%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K KK++E +K K + ++K +++E++K+K+K+ +++++ E R
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 34.3 bits (79), Expect = 0.068
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++ E K EE EE E++ ++ K KK K+K K+ K K+E
Sbjct: 834 QKLMENAGKMEEYVEENG-EEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQE 892
Query: 251 EK 252
E+
Sbjct: 893 ER 894
Score = 29.7 bits (67), Expect = 1.8
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKE---KKKKEKKKEKKKKKKKKKEKKKKKKE 244
K EE EE +EE + K KK+ +KK K+ K K++++E
Sbjct: 842 KMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERE 895
Score = 28.6 bits (64), Expect = 4.6
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKK-KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KEE EE +K E K ++ E+ E++ + K KK
Sbjct: 818 KEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSS 877
Query: 253 KKEKKKKKKKKEKKKKKDEG 272
KK+ K+ K K+++++ G
Sbjct: 878 KKKSKEGKSVLIKQEERETG 897
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 34.3 bits (79), Expect = 0.069
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
E E +E K KK K K EK KK +K KK +K
Sbjct: 812 EFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 33.5 bits (77), Expect = 0.11
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E ++ K KK K K +K K+ KK KK K
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 33.5 bits (77), Expect = 0.12
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E ++ K KK K K +K KK KK K+ +K
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARK 860
Score = 32.3 bits (74), Expect = 0.28
Identities = 16/50 (32%), Positives = 18/50 (36%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
E E E K KK K K EK KK KK KK ++
Sbjct: 812 EFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 30.4 bits (69), Expect = 1.1
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++ K +K K K +K KK KK KK +K
Sbjct: 816 REPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 30.4 bits (69), Expect = 1.1
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK---KKKEEKKK 254
E ++ K KK K K +K KK KK KK +K
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 29.2 bits (66), Expect = 2.9
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
E E +E + KK K K ++ +K KK +K +K
Sbjct: 812 EFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 29.2 bits (66), Expect = 2.9
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
++ K KK K K EK K+ K+ KK K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 28.9 bits (65), Expect = 3.8
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+E K KK K K ++ K+ KK +K + G
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 28.9 bits (65), Expect = 3.8
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
E + +E K KK K K +K ++ +K KK +K
Sbjct: 812 EFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 28.9 bits (65), Expect = 3.8
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+E K KK K K ++ KK KK +K +K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 33.0 bits (76), Expect = 0.070
Identities = 16/62 (25%), Positives = 39/62 (62%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
E++EE++E + +E+ E++ E+ ++E ++ K + + E + +K ++++EE KK
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAI 60
Query: 258 KK 259
+K
Sbjct: 61 EK 62
Score = 32.6 bits (75), Expect = 0.13
Identities = 14/62 (22%), Positives = 42/62 (67%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
EE++EEE+ E++++ ++E ++ +++ E+ K++ + + E +K+ E+++++ +K
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAI 60
Query: 256 KK 257
+K
Sbjct: 61 EK 62
Score = 31.4 bits (72), Expect = 0.30
Identities = 13/62 (20%), Positives = 38/62 (61%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
EEK++E++ E ++E ++E ++ +++ ++ K + E + ++ ++E+++ KK
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAI 60
Query: 265 KK 266
+K
Sbjct: 61 EK 62
Score = 30.3 bits (69), Expect = 0.61
Identities = 13/62 (20%), Positives = 39/62 (62%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ K + ++ E+E+E ++E ++ E++ E+ K++ + + + +K+ ++E+++ KK
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAI 60
Query: 247 KK 248
+K
Sbjct: 61 EK 62
Score = 30.3 bits (69), Expect = 0.63
Identities = 14/61 (22%), Positives = 40/61 (65%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++++EEE ++EE+ E++ E+ +E+ +E K + + + + +K+ ++++++ KK E
Sbjct: 2 EKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAIE 61
Query: 251 E 251
+
Sbjct: 62 K 62
Score = 29.5 bits (67), Expect = 1.1
Identities = 10/59 (16%), Positives = 37/59 (62%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
E+K+E+++ E ++E +++ ++ E++ ++ + + + + E +K+ ++E+++ K
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYA 59
Score = 29.5 bits (67), Expect = 1.2
Identities = 9/57 (15%), Positives = 37/57 (64%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++++++E+ + E++ +++ ++ ++E ++ K + E + +K+ ++++E+ KK
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKK 57
Score = 29.5 bits (67), Expect = 1.3
Identities = 15/62 (24%), Positives = 38/62 (61%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
E+KEE+++ + +E+ E++ +E ++E ++ K + + + +K+ E +++E KK
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAI 60
Query: 262 KK 263
+K
Sbjct: 61 EK 62
Score = 29.1 bits (66), Expect = 1.6
Identities = 13/61 (21%), Positives = 40/61 (65%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+KEEEE+ E+++E ++E ++ +++ ++ K++ + + +++ ++++E+ KK +
Sbjct: 2 EKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAIE 61
Query: 253 K 253
K
Sbjct: 62 K 62
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 33.3 bits (76), Expect = 0.070
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEE 251
K+KK K KK K K KK ++KKK +E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 32.5 bits (74), Expect = 0.16
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
++K EKKKK K KK K + KK E KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 31.3 bits (71), Expect = 0.33
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKE 244
EKKKK K K+ K K KK ++KKK ++
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 31.3 bits (71), Expect = 0.34
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEG 272
KKK+ K K+ K K KK E KKK EG
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 30.2 bits (68), Expect = 0.78
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++K +KKKK K KK + K K+ + KKK +E
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 30.2 bits (68), Expect = 0.86
Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 227 EKKKKKKKKKEK-KKKKKEKKKKKEE 251
EKKKK K KK K K KK E KKK E
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 29.8 bits (67), Expect = 1.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKE 237
KK+K K KK K K K+ + KKK ++
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 29.4 bits (66), Expect = 1.3
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 211 KKKEKKKEKKKKEKKKEKKKK-KKKKKEKKKKKKE 244
++K +KK+K K KK K K KK E KKK +E
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 29.4 bits (66), Expect = 1.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
++K +KKK+ K KK + K KK+E KK+ +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.3 bits (63), Expect = 3.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
++K +K+KK K KK + K KK + K+K +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.3 bits (63), Expect = 4.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKE 264
KKKK + KK K + KK++ KKK ++
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 27.5 bits (61), Expect = 5.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
+RK E++KK + KK K K KK E KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.5 bits (61), Expect = 7.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKK 229
E+KKK K K+ K + KK E KK+ +
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.1 bits (60), Expect = 7.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKE 227
EKK++ K +K K K K+ + K+K +E
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 27.1 bits (60), Expect = 9.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKK 230
EKKK+ K +K K K KK++ K+K +
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 33.7 bits (77), Expect = 0.070
Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+ ++K++RR ++ KE+ K++E+K ++K+ + K
Sbjct: 157 DEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGG--SSGGQSGLSTK 214
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKE 255
+ KEK++K + +++ E + E
Sbjct: 215 DEPPKEKRQKHHDPERRLEPQSHE 238
Score = 31.4 bits (71), Expect = 0.41
Identities = 18/81 (22%), Positives = 42/81 (51%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
R+K RKR K++E+ + E+ ++ K+ +KK+++K + ++K+ +
Sbjct: 151 SRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSG 210
Query: 239 KKKKKEKKKKKEEKKKEKKKK 259
K E K+K +K + +++
Sbjct: 211 LSTKDEPPKEKRQKHHDPERR 231
Score = 31.4 bits (71), Expect = 0.43
Identities = 17/74 (22%), Positives = 40/74 (54%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
E K+ K+KEK++ + +K K++++K++++K++ ++K+ + K +
Sbjct: 158 EHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEP 217
Query: 260 KKKKEKKKKKDEGR 273
K+K +K E R
Sbjct: 218 PKEKRQKHHDPERR 231
Score = 31.4 bits (71), Expect = 0.44
Identities = 17/81 (20%), Positives = 43/81 (53%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K E+ ++E + +KK + +K+ K+KEK++ + +K K+ +KK++++++ ++++
Sbjct: 138 KNAEKFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKR 197
Query: 253 KKEKKKKKKKKEKKKKKDEGR 273
+ KDE
Sbjct: 198 PGGGGGSSGGQSGLSTKDEPP 218
Score = 31.4 bits (71), Expect = 0.44
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ + ++R K+K KR+ E+ +K +E + +KK+++K + E K+ +
Sbjct: 152 RKKSDDEHRKRSGKQKEKRRVEDSQKHKE--DRRKKQEEKRRNDEDKRPGGGGGSSGGQS 209
Query: 234 KKKEKKKKKKEKKKKKEEKKK 254
K + KEK++K + ++
Sbjct: 210 GLSTKDEPPKEKRQKHHDPER 230
Score = 31.0 bits (70), Expect = 0.46
Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK---KKKKKKKEKKKKKKEKK 246
RK+ +E K K++EK++ + +K KE ++K+++++++ K+ +
Sbjct: 152 RKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGL 211
Query: 247 KKKEEKKKEKKKKKKKKEKK 266
K+E KEK++K E++
Sbjct: 212 STKDEPPKEKRQKHHDPERR 231
Score = 29.5 bits (66), Expect = 1.5
Identities = 20/60 (33%), Positives = 40/60 (66%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K EK +KE + +KK + K+ K+++K++ E+ +K K+ ++KK+E+K++ DE +R
Sbjct: 138 KNAEKFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKR 197
Score = 28.7 bits (64), Expect = 2.6
Identities = 16/67 (23%), Positives = 42/67 (62%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K +K EK+ ++K ++ +K+ K+++K++ ++ +K KE+++K++++K++ E K+
Sbjct: 138 KNAEKFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKR 197
Query: 268 KKDEGRR 274
G
Sbjct: 198 PGGGGGS 204
Score = 27.9 bits (62), Expect = 5.0
Identities = 14/74 (18%), Positives = 38/74 (51%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+K EK+ KK + + +++ ++K+K++ + +K K+ +KK++E+++ ++ K+
Sbjct: 140 AEKFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPG 199
Query: 262 KKEKKKKKDEGRRR 275
G
Sbjct: 200 GGGGSSGGQSGLST 213
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 32.2 bits (74), Expect = 0.070
Identities = 19/82 (23%), Positives = 45/82 (54%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+ + RKR + ++ E EE+++ + + ++ + ++ E KE K KKKK++ +
Sbjct: 15 KEKLRKRGVDVLDVDELLELDEERRELQVELEELQAERNELSKEIGKAKKKKEDAEALIA 74
Query: 244 EKKKKKEEKKKEKKKKKKKKEK 265
E K+ K+E K + + ++ + +
Sbjct: 75 EVKELKDELKALEAELRELEAE 96
Score = 29.9 bits (68), Expect = 0.44
Identities = 12/54 (22%), Positives = 32/54 (59%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+++++E + E ++ + ++ E K+ + KKKKE+ + + K+ K++ K +
Sbjct: 35 DEERRELQVELEELQAERNELSKEIGKAKKKKEDAEALIAEVKELKDELKALEA 88
Score = 29.1 bits (66), Expect = 0.88
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ +R+ + E EE + E+ E K+ K +KKKE + E K+ K + K + + +E +
Sbjct: 36 EERRELQVELEELQAERNELSKEIGKAKKKKEDAE-ALIAEVKELKDELKALEAELRELE 94
Query: 247 KKKEEK 252
+ ++
Sbjct: 95 AELDKL 100
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 33.5 bits (76), Expect = 0.075
Identities = 16/83 (19%), Positives = 43/83 (51%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ + + E+ EE + + K K K+++ K ++ ++ K E+K+
Sbjct: 161 ENQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQP 220
Query: 249 KEEKKKEKKKKKKKKEKKKKKDE 271
+EE+++E+ +++ K+E+ + D+
Sbjct: 221 QEEQEEEEVEEEAKQEEGQGTDD 243
Score = 30.4 bits (68), Expect = 0.76
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKK--KEKKKEKKKEKKKKEK 224
L+ G + K + K+++ K +E +E K EEK+ +E+++E+ +E+ K+E+
Sbjct: 180 LQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 28.5 bits (63), Expect = 4.0
Identities = 15/79 (18%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE---KKKKKEEKKK 254
E + + ++ E+ + + K K K+E+ K + ++ K EEK+
Sbjct: 161 ENQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQP 220
Query: 255 EKKKKKKKKEKKKKKDEGR 273
++++++++ E++ K++EG+
Sbjct: 221 QEEQEEEEVEEEAKQEEGQ 239
Score = 28.1 bits (62), Expect = 4.1
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
+ ++ ++ K + K+ +EE+EEE+ EE+ K+++ + +
Sbjct: 204 SKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 32.8 bits (75), Expect = 0.075
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK-K 248
KR + + E++ + E E + + KK+ ++ + ++ KK + K K
Sbjct: 62 NKRIDKLLKGLREEELSPETPTYNEMLAELQDQLKKELEEANGDSEGLLEELKKHRDKLK 121
Query: 249 KEEKKKEKKKKKKKKEKKKK 268
KE+K+ KK + +KE+KKK
Sbjct: 122 KEQKELRKKLDELEKEEKKK 141
Score = 29.7 bits (67), Expect = 0.97
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK-----KKKKKE 237
Q R +R + K + E K+ +K + +E++ + + + KKE
Sbjct: 39 QARVERMEEIKNLKYELIMNDHLNKRIDKLLKGLREEELSPETPTYNEMLAELQDQLKKE 98
Query: 238 KKKKKKEKKKKKEEKKKEKKK-KKKKKEKKKKKDE 271
++ + + EE KK + K KK++KE +KK DE
Sbjct: 99 LEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDE 133
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 33.8 bits (78), Expect = 0.077
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 162 WGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
WG G KK+R+KQRR++ K R+ ++++++E+ E E +E+++E
Sbjct: 169 WGLVGVPGHSSDSEKKKQRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEERQRE 225
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 33.2 bits (76), Expect = 0.078
Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
++ K + KR+ +E+EE E+ +EEK + KE+K+ +KE++++K K+K K+E
Sbjct: 74 EKENKDSIMRNKRRLTREQEELEQALEEEK---EMKEEKRLHLQKEEQEQKMAKEKDKQE 130
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + + KK+ K+ E + +K E ++R
Sbjct: 131 IIDELETSNLPANVIIAQHKKQSKQLESQVEKLERKKR 168
Score = 32.4 bits (74), Expect = 0.13
Identities = 19/88 (21%), Positives = 51/88 (57%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
R ++R + ++E E+ EE+KE K++++ +K+E+++K K++ K++ + E
Sbjct: 82 MRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQEIIDELETSNLP 141
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ +K+ ++ + + +K ++KK+
Sbjct: 142 ANVIIAQHKKQSKQLESQVEKLERKKRV 169
>gnl|CDD|225123 COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC
component [Carbohydrate transport and metabolism].
Length = 472
Score = 33.8 bits (78), Expect = 0.079
Identities = 13/45 (28%), Positives = 16/45 (35%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K K E E + E K KE K E K + + KK
Sbjct: 336 KTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
Score = 31.5 bits (72), Expect = 0.41
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K E + + + K KE K + K + K KK
Sbjct: 339 KTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
Score = 31.5 bits (72), Expect = 0.41
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 198 EKEEEKKE-EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
K E + + E K KE K E K + K KK
Sbjct: 338 SKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K K E + + K +E K E K + K D +
Sbjct: 336 KTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVK 379
Score = 30.0 bits (68), Expect = 1.6
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K K + + + K KE K E K + K KK
Sbjct: 336 KTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
Score = 29.2 bits (66), Expect = 2.2
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K K + E E K K+ + + K + + K KK
Sbjct: 336 KTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
Score = 29.2 bits (66), Expect = 2.6
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K K + + + K KE K + K + + +K
Sbjct: 336 KTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
Score = 28.8 bits (65), Expect = 3.7
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
K K + + E K K+ K + + + K + +K
Sbjct: 336 KTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 33.6 bits (77), Expect = 0.081
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KK+++KKE+ K +KK+ +K ++ K KE + E E + KKK+ K K +
Sbjct: 163 KKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKKKAKSKYE 222
Query: 271 E 271
E
Sbjct: 223 E 223
Score = 31.6 bits (72), Expect = 0.29
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
RKKE+E+KE+ K ++K+ +K +E K K+ + + E + K+KK K
Sbjct: 161 LRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKKKAK 218
Score = 30.9 bits (70), Expect = 0.65
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 202 EKKEEKKKEKKKEKKKEKKKK--EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
E +K+KEKK++ K +KK+ EK ++ K KE + E + + K+KK K
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKKKAK 218
Query: 260 KKKKE 264
K +E
Sbjct: 219 SKYEE 223
Score = 27.4 bits (61), Expect = 8.4
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 169 LEYGYKGGKKERRKQRRRKRK---RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
LE K K+++ + + +K++ K EE + K+ + + + KK+K
Sbjct: 158 LELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKKKA 217
Query: 226 KEK 228
K K
Sbjct: 218 KSK 220
>gnl|CDD|99918 cd05535, POLBc_epsilon, DNA polymerase type-B epsilon subfamily
catalytic domain. Three DNA-dependent DNA polymerases
type B (alpha, delta, and epsilon) have been identified
as essential for nuclear DNA replication in eukaryotes.
DNA polymerase (Pol) epsilon has been proposed to play a
role in elongation of the leading strand during DNA
replication. Pol epsilon might also have a role in DNA
repair. The structure of pol epsilon is characteristic
of this family with the exception that it contains a
large c-terminal domain with an unclear function.
Phylogenetic analyses indicate that Pol epsilon is the
ortholog to the archaeal Pol B3 rather than to Pol
alpha, delta, or zeta. This might be because pol epsilon
is ancestral to both archaea and eukaryotes DNA
polymerases type B.
Length = 621
Score = 33.8 bits (78), Expect = 0.082
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 17/100 (17%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK------------- 231
+ E EE+ +E KK+ K +K KK K+E++
Sbjct: 168 LFPGGPPKSFHELSPEEQAEELKKRLKDYSRKVYKKTHVTKEEERSTTICQRENPFYVDT 227
Query: 232 ----KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ ++ E K K KKK E K + K+ KK
Sbjct: 228 VRAFRDRRYEYKGLHKVWKKKLEAAKAAGDAAEIKEAKKM 267
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 33.5 bits (77), Expect = 0.084
Identities = 11/90 (12%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKE--EEKKEEKKKEKKKEKKKEKKKKEKKK 226
LE K + + RK+++ + + + KEE ++++++ ++ ++ +++
Sbjct: 47 LEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRS 106
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ + ++++ + EK + + ++ + K
Sbjct: 107 DLSSASYQLEKRRASQLEKLQDEIKRTRSK 136
Score = 33.1 bits (76), Expect = 0.13
Identities = 20/109 (18%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK----------KK 226
+ + + + ++K EE E E+ K K + +KKE+ K
Sbjct: 25 LRLDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLK 84
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E+ ++K+++ E+ K+ +++ + +K++ + +K +DE +R
Sbjct: 85 EEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRT 133
Score = 32.3 bits (74), Expect = 0.22
Identities = 13/85 (15%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK-EKKKKEKKKEKKKKKKK 234
+ + K + RKKE + + + K+E ++++++ E+ K+ + +
Sbjct: 52 NEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSA 111
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKK 259
+ +K++ + +K +++ K + K
Sbjct: 112 SYQLEKRRASQLEKLQDEIKRTRSK 136
Score = 29.3 bits (66), Expect = 2.4
Identities = 15/94 (15%), Positives = 40/94 (42%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
R R + E +E ++K E+ E + + K E +KK++ + +
Sbjct: 19 RNSLYELRLDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRA 78
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ + K++ E+K++ ++ K+ +++
Sbjct: 79 RISQLKEEIEQKRERIEELKRALAQRRSDLSSAS 112
Score = 27.7 bits (62), Expect = 6.2
Identities = 14/83 (16%), Positives = 42/83 (50%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K + + E +K+E+ + + + K++ E+K+E+ ++ K+ +++
Sbjct: 54 DGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSASY 113
Query: 249 KEEKKKEKKKKKKKKEKKKKKDE 271
+ EK++ + +K + E K+ + +
Sbjct: 114 QLEKRRASQLEKLQDEIKRTRSK 136
Score = 27.3 bits (61), Expect = 8.0
Identities = 12/82 (14%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK--EKKKEKKKKKKKKKEKKK 240
+ + K E K+E + + + + +++ E+K++ E+ K +++
Sbjct: 53 EDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSAS 112
Query: 241 KKKEKKKKKEEKKKEKKKKKKK 262
+ EK++ + +K + + K+ +
Sbjct: 113 YQLEKRRASQLEKLQDEIKRTR 134
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 32.2 bits (74), Expect = 0.087
Identities = 29/86 (33%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK--KEKKKEKKKKKKKKKEKKKKKK 243
KR+ ++EE K+ E++ EKK+E+ +E + K KE + ++++ +KK +E+KK +K
Sbjct: 18 AKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRK 77
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKKK 269
EK+++ +E K E ++ K + EK ++K
Sbjct: 78 EKEEEIKELKAELEELKAEIEKLEEK 103
Score = 30.3 bits (69), Expect = 0.44
Identities = 28/93 (30%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 182 KQRRRKRKRKRKKEEEEKEE-EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+R + +R+ + ++ +EE EKKEE+ +E + K K+ E K+ + +KK ++++K +
Sbjct: 17 DAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLR 76
Query: 241 KKKEKKKKK-----EEKKKEKKKKKKKKEKKKK 268
K+KE++ K+ EE K E +K ++K E+ +
Sbjct: 77 KEKEEEIKELKAELEELKAEIEKLEEKLEEYQP 109
Score = 30.3 bits (69), Expect = 0.45
Identities = 24/82 (29%), Positives = 50/82 (60%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ K EE + ++ K++E++ EKK++E ++ K K KE + K++ +KK EE+K
Sbjct: 14 LALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEK 73
Query: 254 KEKKKKKKKKEKKKKKDEGRRR 275
K +K+K+++ ++ K + E +
Sbjct: 74 KLRKEKEEEIKELKAELEELKA 95
Score = 28.3 bits (64), Expect = 2.1
Identities = 27/91 (29%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKE-KKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
RR+ + K+EE E+ EE +++++E +KKE++ ++ + K K+ + K++
Sbjct: 6 RREMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRA 65
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+KK +E+KK ++EK++E K+ K + E+ K +
Sbjct: 66 EKKAEEEKKLRKEKEEEIKELKAELEELKAE 96
Score = 28.0 bits (63), Expect = 3.0
Identities = 24/84 (28%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK--KKEKKKKEKKKEKKKKKKK 234
++E KQR + ++K ++ +E + K K+ E K+ + KK +++K+ +KEK+++ K+
Sbjct: 26 REELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRKEKEEEIKE 85
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKK 258
K + ++ K + +K EEK +E +
Sbjct: 86 LKAELEELKAEIEKLEEKLEEYQP 109
Score = 26.8 bits (60), Expect = 6.0
Identities = 19/74 (25%), Positives = 48/74 (64%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E+ +E E+ + K++E ++ ++ ++++E+ +KK+++ ++ K +K K+ E K+
Sbjct: 4 EKRREMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRR 63
Query: 256 KKKKKKKKEKKKKK 269
+ +KK ++EKK +K
Sbjct: 64 RAEKKAEEEKKLRK 77
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 33.8 bits (77), Expect = 0.089
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+K K E+ K E + +K +E++K+K+K + K+ + KK++K KEK +K
Sbjct: 541 YKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSS 600
Query: 249 KEEKKKEKKKKK 260
K ++ K
Sbjct: 601 AFFAKLQETKAV 612
Score = 32.7 bits (74), Expect = 0.20
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
EE ++ K +K + + ++ K +++ KKK+K++ +K K +K++K ++K + KK
Sbjct: 538 EEIYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKK 597
Query: 261 KKKEKKKKKDE 271
K E
Sbjct: 598 SSSAFFAKLQE 608
Score = 32.7 bits (74), Expect = 0.21
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K+ K E+ + E K ++++KK++++ +K K KK++K ++K KK
Sbjct: 542 KKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSA 601
Query: 251 EKKKEKKKKKK 261
K ++ K
Sbjct: 602 FFAKLQETKAV 612
Score = 32.3 bits (73), Expect = 0.33
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK-KKKEKKKEKKKKKKKKKEKKKKKKE 244
+K K K + E +K E++K+K+K + +K K KK+ K K+K KK
Sbjct: 542 KKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSA 601
Query: 245 KKKKKEEKKK 254
K +E K
Sbjct: 602 FFAKLQETKA 611
Score = 28.8 bits (64), Expect = 4.1
Identities = 17/78 (21%), Positives = 39/78 (50%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E+EE +EE E + ++K +KK E + + K+ KK+ K ++++E+
Sbjct: 241 GEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEED 300
Query: 254 KEKKKKKKKKEKKKKKDE 271
E++ + ++E + +
Sbjct: 301 DEQEDDQDEEEPPEAAMD 318
Score = 28.0 bits (62), Expect = 6.8
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
E KK K EK K + + +K +++++KK+K+ KK K KK+++ K+K +G
Sbjct: 539 EIYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDG 593
Score = 28.0 bits (62), Expect = 7.0
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
E+ K+ K +K K + + K +++ KKK+K K+ K KK+ K K+
Sbjct: 538 EEIYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDG 593
Score = 28.0 bits (62), Expect = 7.1
Identities = 15/92 (16%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ + + + E+ ++ E+ K ++ ++++ E+ + + KEK KKK
Sbjct: 208 EAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKK 267
Query: 243 K--EKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+ + ++++ ++ KK+ K +++DE
Sbjct: 268 DAGDDAELEDDEPDKEAVKKEADSKPEEEDEE 299
Score = 27.6 bits (61), Expect = 8.6
Identities = 13/87 (14%), Positives = 36/87 (41%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ +E + E + E K+ + ++++ +++ + + K+K+KKK
Sbjct: 209 AEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKD 268
Query: 249 KEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + + + K+ KK+ D
Sbjct: 269 AGDDAELEDDEPDKEAVKKEADSKPEE 295
Score = 27.6 bits (61), Expect = 9.1
Identities = 16/75 (21%), Positives = 37/75 (49%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E+ +E + +E+KK +++E +EK+ E+ +KK K + K K ++ + E
Sbjct: 148 LEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEAT 207
Query: 254 KEKKKKKKKKEKKKK 268
+ +++ E +
Sbjct: 208 EAEEEAALGDEDDFE 222
Score = 27.6 bits (61), Expect = 9.5
Identities = 16/78 (20%), Positives = 39/78 (50%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
++EE+ EE E + KEK K+K + + + + K+ KK+ + +++ EE
Sbjct: 241 GEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEED 300
Query: 253 KKEKKKKKKKKEKKKKKD 270
+++ + +++ + D
Sbjct: 301 DEQEDDQDEEEPPEAAMD 318
>gnl|CDD|237147 PRK12586, PRK12586, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 145
Score = 32.4 bits (74), Expect = 0.095
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
R R RK + ++ + + KK+E+ ++K
Sbjct: 93 RAAYRNGAYMYRKNDAHTHASILLSSNEQNSTEALQLRAKKREEHRKK 140
Score = 30.9 bits (70), Expect = 0.31
Identities = 5/42 (11%), Positives = 16/42 (38%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ ++ + + + KK+E+ +KK + +
Sbjct: 104 RKNDAHTHASILLSSNEQNSTEALQLRAKKREEHRKKWYQND 145
Score = 29.0 bits (65), Expect = 1.5
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 173 YKGGKKERRK--QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK 219
Y+ G RK E+ E + KK+E+ ++K +
Sbjct: 96 YRNGAYMYRKNDAHTHASILLSSNEQNSTEALQLRAKKREEHRKKWYQN 144
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 33.7 bits (77), Expect = 0.10
Identities = 14/51 (27%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK---EKKKKK 269
+EK++E +K K++ E++++ +E+++++EEK + + + K EK+++K
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
Score = 32.9 bits (75), Expect = 0.21
Identities = 14/50 (28%), Positives = 35/50 (70%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
EEK+ E +K K+E ++E++ +E+++ +++K + ++ + K E +K++E
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRRE 301
Score = 32.5 bits (74), Expect = 0.27
Identities = 15/58 (25%), Positives = 37/58 (63%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+E+R++ + K + ++E + +E+ ++EE+K + ++ + K + EK++EK + KK
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKK 309
Score = 32.5 bits (74), Expect = 0.28
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ +R+ K KEE E+E + +E++++E++K E + + K E +K+++K + KK
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEK-AAMEADRAQAKAEVEKRREKLQNLLKK 309
Score = 32.1 bits (73), Expect = 0.33
Identities = 12/51 (23%), Positives = 36/51 (70%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
EE+ +E EK +++ E++++ +++++++E+K + + + K + +K++EK
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
Score = 32.1 bits (73), Expect = 0.36
Identities = 17/59 (28%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
EEK++E +K KE+ ++E++ E++++++++K + + + K + EK++EK + KK
Sbjct: 252 EEKRRELEK-LAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKK 309
Score = 31.4 bits (71), Expect = 0.54
Identities = 15/55 (27%), Positives = 34/55 (61%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
++E K + + +R+R+ EE+ + EE+K + ++ + K + +K++EK + KK
Sbjct: 255 RRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKK 309
Score = 31.0 bits (70), Expect = 0.76
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
RK +EE + E+ K EK K E K+K K
Sbjct: 437 RKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKM 471
Score = 30.2 bits (68), Expect = 1.3
Identities = 13/53 (24%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+EK++E +K K E+ +++++ +E++++++EK + ++ + K + +K++EK
Sbjct: 252 EEKRRELEKLAK--EEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
Score = 29.5 bits (66), Expect = 2.4
Identities = 11/58 (18%), Positives = 39/58 (67%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ K+ E EK +++ E++++ ++++++E++K + ++ + K + +++++K + KK
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKK 309
Score = 28.7 bits (64), Expect = 4.4
Identities = 12/51 (23%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 200 EEEKKE-EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
EE+++E EK +++ E++++ +++ +++E+K + + + K + EK+++K
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
Score = 28.7 bits (64), Expect = 4.6
Identities = 10/42 (23%), Positives = 24/42 (57%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
EEE + K +E+++ +++ + + +K + K + K+K K
Sbjct: 430 EEEHQIYRKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKM 471
Score = 27.9 bits (62), Expect = 6.6
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
++ +++++ ++E + K EK + + + KEK K
Sbjct: 437 RKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKM 471
Score = 27.9 bits (62), Expect = 6.6
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+K +E+++ +++ + K EK + K + K+K K
Sbjct: 437 RKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKM 471
Score = 27.9 bits (62), Expect = 7.0
Identities = 15/58 (25%), Positives = 36/58 (62%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ KR++ E+ +EE + E++ E+++ +++EK E + + K + +K+ +K + KK
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKK 309
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 33.5 bits (77), Expect = 0.10
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K KEE+EK K + +E E + K K K++ +K K+ KKK EK+ K+
Sbjct: 293 KYDKEEDEKPLFLKWKLPISIVRETYYEVQDKVVKLTKEEAVEKGKKLAKKKLEKEIDKD 352
Query: 251 EKKKEKKKKKKKKEKKKKK 269
K K++K ++ E K +
Sbjct: 353 AKIKDEKVLHERVENGKVR 371
Score = 32.3 bits (74), Expect = 0.22
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
RK + E+ +KEE++K K K + E + +K K K++ +K KK KKK
Sbjct: 286 FRKNEFEKYDKEEDEKPLFLKWKLPISIVRETYYEVQ-DKVVKLTKEEAVEKGKKLAKKK 344
Query: 249 KEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E++ + K K +K ++ + G+ R
Sbjct: 345 LEKEIDKDAKIKDEKVLHERVENGKVR 371
Score = 27.7 bits (62), Expect = 6.3
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK-------- 249
E E + E +K K +K K +K E +K KE+ +K
Sbjct: 251 ESTVEVPLKTNFEVLTGEKITKHYLSIGGKKLPLKFRKNEFEKYDKEEDEKPLFLKWKLP 310
Query: 250 ----EEKKKEKKKKKKKKEKKKKKDEGRR 274
E E + K K K++ ++G++
Sbjct: 311 ISIVRETYYEVQDKVVKLTKEEAVEKGKK 339
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 33.6 bits (78), Expect = 0.10
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
+ E+E +E+ + ++ +EK+KK +K E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.5 bits (75), Expect = 0.23
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEK--KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
E E + K K E + + ++E K++ + K+ E+K+KK EK
Sbjct: 481 ELTSWESLLEWGGLPAGTKVAKGEPLFPRIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEK 540
Query: 253 K 253
Sbjct: 541 P 541
Score = 31.3 bits (72), Expect = 0.64
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ ++E K++ + K+ E+K+KK +K E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 31.3 bits (72), Expect = 0.66
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ + EE+ KE+ + KE ++++KK EK
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 30.2 bits (69), Expect = 1.2
Identities = 6/33 (18%), Positives = 19/33 (57%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ + +++ K++ E ++ ++K+KK +K
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 29.8 bits (68), Expect = 1.7
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+ + +++ KE+ + K+ +++EKK EK
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 29.8 bits (68), Expect = 1.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
R +EE +E+ E ++ +EK+K+ +K E
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.4 bits (67), Expect = 2.4
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++E K++ + ++ +EK+KK +K E
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.0 bits (66), Expect = 3.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++E KE+ + K+ ++KEKK +K E
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 28.6 bits (65), Expect = 3.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ +++ KE+ + K+ ++KEKK +K E
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 28.6 bits (65), Expect = 4.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
R EEE K++ + K+ ++KEKK ++
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 33.8 bits (78), Expect = 0.11
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E ++K +K++ + +K+ + E+ +K K KK KE++ + D
Sbjct: 458 SPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPD 503
Score = 33.5 bits (77), Expect = 0.13
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK--------KKE 244
E EEK E+++ E +++ E E +K K KK K+++ + ++ K
Sbjct: 458 SPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEEDLATLPTLKLG 517
Query: 245 KKKKKEEKKKEKKK 258
EK + +
Sbjct: 518 DVPDPIEKTSLETE 531
Score = 30.0 bits (68), Expect = 1.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E ++K +K+E++ +K+ E + EK K +K KE++ + +E
Sbjct: 458 SPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEE 506
Score = 29.6 bits (67), Expect = 2.2
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +KEE E +++ E E ++ K+ KK ++++++ ++
Sbjct: 464 KLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEE 506
Score = 29.6 bits (67), Expect = 2.4
Identities = 9/49 (18%), Positives = 27/49 (55%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E +++ +K+E++ +K+ + E +K + KK +E++ + ++
Sbjct: 458 SPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEE 506
Score = 28.1 bits (63), Expect = 6.3
Identities = 10/69 (14%), Positives = 30/69 (43%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++ ++EE + +K+ + ++ EK + KK K+++ + ++ K
Sbjct: 463 EKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEEDLATLPTLKLGDVPDP 522
Query: 251 EKKKEKKKK 259
+K + +
Sbjct: 523 IEKTSLETE 531
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 33.7 bits (78), Expect = 0.11
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKE--------KKKEKKKKKKKKKEKKKKKKEK 245
+E E+ + EE E KK K++ + K E +K K++ K + KKK +E
Sbjct: 503 DDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEA 562
Query: 246 ----KKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K++ E + KE+ + K ++ +K + G R
Sbjct: 563 IEWLKEELEGEDKEEIEAKTEELQKVVQPIGERM 596
Score = 31.4 bits (72), Expect = 0.46
Identities = 17/71 (23%), Positives = 38/71 (53%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+R+ + + K + EE EK +++ +K E K+K ++ + K++ + + KE
Sbjct: 517 AAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKE 576
Query: 238 KKKKKKEKKKK 248
+ + K E+ +K
Sbjct: 577 EIEAKTEELQK 587
Score = 30.3 bits (69), Expect = 1.1
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKE--------KKKEKKKKEKKKEKKKKKKK------K 235
R K EE E+KK +++ E K E +K K++ +K E KKK + K
Sbjct: 508 RMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIEWLK 567
Query: 236 KEKKKKKKEKKKKKEEK 252
+E + + KE+ + K E+
Sbjct: 568 EELEGEDKEEIEAKTEE 584
>gnl|CDD|187861 cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as TM1802 family.
Length = 579
Score = 33.5 bits (77), Expect = 0.11
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
+Y YKG + K + + KK +K EK + KK+ K K K
Sbjct: 66 KYLYKGQAGNASQDYLPTNK-ITYLLKTTEPLNKKIKKWFEKSYLLLESKKEILKLKNIK 124
Query: 230 KKKKKKKEKKKKKKEKKKKKE--------------------EKKKEKKKKKKKKEKKKKK 269
+K EK K + K E E+ ++K KKK + KK K
Sbjct: 125 DVLEKNIEKILKDIQDLKPGENVILTIKIDGKKLLEYDEDYEEFRDKVLKKKVFKDKKAK 184
Query: 270 DEG 272
++G
Sbjct: 185 EKG 187
Score = 27.3 bits (61), Expect = 9.6
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 15/94 (15%)
Query: 195 EEEEKEEEKKEEK---------------KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ EE+ ++K K K K + KK +K +K +
Sbjct: 54 KGEEEFDKKTFRKYLYKGQAGNASQDYLPTNKITYLLKTTEPLNKKIKKWFEKSYLLLES 113
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
KK+ K K ++ ++ +K K + K E
Sbjct: 114 KKEILKLKNIKDVLEKNIEKILKDIQDLKPGENV 147
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 32.9 bits (75), Expect = 0.11
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK-KKEK 228
+ G + R + R K E + + +E +K K+ + + EK +KE
Sbjct: 59 KAGMTISEIAEELGRTEQTVRNHLKGETKAGQLVRETYEKLKEGGLDAVEVEIEKLEKEG 118
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K + + KK K E +E +EK K + K + ++
Sbjct: 119 LKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGEPLEE 159
Score = 29.8 bits (67), Expect = 1.1
Identities = 15/90 (16%), Positives = 37/90 (41%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ R+ + ++ E E E+ +KE K E K+ K + +K+ ++K K
Sbjct: 90 QLVRETYEKLKEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKG 149
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ K + ++ ++ + + + K
Sbjct: 150 EVIKGEPLEEVIDKLEYPVESPADLLHEIK 179
Score = 29.1 bits (65), Expect = 2.0
Identities = 18/93 (19%), Positives = 36/93 (38%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K G+ R + K E E ++ EK+ K + + KK K + ++ ++K
Sbjct: 87 KAGQLVRETYEKLKEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEK 146
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K E K + ++ + + + E K
Sbjct: 147 LKGEVIKGEPLEEVIDKLEYPVESPADLLHEIK 179
Score = 28.3 bits (63), Expect = 3.5
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK-KKKEKKKKKKEKK 246
K K + + E +K EK+ K + + KK + + K+ ++K K + K +
Sbjct: 97 EKLKEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGEP 156
Query: 247 KKKEEKKKEKKKKKKKKEKKKKK 269
++ K E + + K
Sbjct: 157 LEEVIDKLEYPVESPADLLHEIK 179
Score = 27.9 bits (62), Expect = 4.2
Identities = 15/77 (19%), Positives = 28/77 (36%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
G + E K + K + E +K + + KE +EK K + K + E+
Sbjct: 103 GLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGEPLEEVID 162
Query: 232 KKKKKEKKKKKKEKKKK 248
K + + + K
Sbjct: 163 KLEYPVESPADLLHEIK 179
Score = 27.5 bits (61), Expect = 6.7
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E + + + ++ KE E + EK + KE K + E K+ K +
Sbjct: 83 KGETKAGQLVRETYEKLKEGGLDAVEVEIEKLE---KEGLKIRWAVEVLKKIKGEHFPMD 139
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++ ++K K + + + E+ K + + D
Sbjct: 140 KELLEEKLKGEVIKGEPLEEVIDKLEYPVESPAD 173
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 32.6 bits (75), Expect = 0.12
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK+ +R + + +KK EE + E +E K+K+K K K + E + K K +
Sbjct: 2 KKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNE--GNTQSKGKGQA 59
Query: 237 EKKKKKKEKKKK----KEEKKKEKKKKKKKKEKK 266
+KK + KK EEK K KKKK K K+ K
Sbjct: 60 QKKDPRIGSKKPIPLGVEEKVKPKKKKPKSKKPK 93
Score = 31.4 bits (72), Expect = 0.29
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KK+K K+ + K KKK +++ + +E+K+KKK K K + E + K K + +
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQ 60
Query: 268 KKD 270
KKD
Sbjct: 61 KKD 63
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 32.2 bits (74), Expect = 0.12
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 15/100 (15%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEE----EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
E+ +R + K + K E E+ + +K++ + K +++ K KEKKKKKKK
Sbjct: 28 EKYDKREEEAKEEAKARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKK 87
Query: 235 KK---------EKKKKKKE--KKKKKEEKKKEKKKKKKKK 263
+ EKKK++ +KK +E+KK+ ++ K +K
Sbjct: 88 ELENFYRFQIREKKKEELAELRKKFEEDKKRIEQLKAARK 127
Score = 28.0 bits (63), Expect = 2.5
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E+ K +++ K++ K + E ++ + K+K + K EE++K K+KKKKKK+
Sbjct: 28 EKYDKREEEAKEEAKARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKK 87
Query: 265 KKK 267
+ +
Sbjct: 88 ELE 90
Score = 27.2 bits (61), Expect = 5.4
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
EK ++++E K+E K + + E + +K+K + K E++++ K+KKKKK+K
Sbjct: 28 EKYDKREEEAKEEAKARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKK 87
Query: 266 KKK 268
+ +
Sbjct: 88 ELE 90
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 33.5 bits (76), Expect = 0.12
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKE--KKKEKKKKEKKKEKKKKKKKKKEK 238
K R ++K+ E EK E + +K + K+ KKK ++ ++ K+ K
Sbjct: 603 EKSMDRILHGQKKRAEGAVVFEKPLEATENFNPWLDRKMRRIKRIKKKAYRRIRRDKRLK 662
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KK +E+ ++ EKK+ + K+ E
Sbjct: 663 KKMPEEENTQENHLGSEKKRHGGVPDILLKEIE 695
>gnl|CDD|234537 TIGR04313, aro_clust_Mycop, aromatic cluster surface protein.
Members of this family are absolutely restricted to the
Mollicutes (Mycoplasma and Ureaplasma). All have a
signal peptide, usually of the lipoprotein type,
suggesting surface expression. Most members have lengths
of about 280 residues but some members have a nearly
full-length duplication. The mostly nearly invariant
residue, a Trp,is part of a strongly conserved 9-residue
motif, [ND]-W-[LY]-[WF]-X-[LF]-X-N-[LI], where X usually
is hydrophobic. Because the hydrophobic six-residue core
of this motif almost always contains three to four
aromatic residues, we name this family aromatic cluster
surface protein. Multiple paralogs may occur in a given
Mycoplasma, usually clustered on the genome.
Length = 297
Score = 33.1 bits (76), Expect = 0.12
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK---------KKKEKKKKKEEKKKEKK 257
+ E +K + K KK +K KK K K K E +K K K ++
Sbjct: 26 SQSENDLKKLIKNKFDVKKDKKDKKWKVFLNNKYINNLLNLVFKNDEDEKNKYIKSQKNI 85
Query: 258 KKKKKKEKKKKKDE 271
+ + K E
Sbjct: 86 NSELYLKLLKLSLE 99
Score = 32.0 bits (73), Expect = 0.28
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 13/91 (14%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKK-------------KEKKKEKKKKEKKKEKKKKKKKK 235
K K + ++ +++KK + K +++K + K +K + K
Sbjct: 35 LIKNKFDVKKDKKDKKWKVFLNNKYINNLLNLVFKNDEDEKNKYIKSQKNINSELYLKLL 94
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K + +K +KK
Sbjct: 95 KLSLEYLNNINNSSSNDSDFFSYLYEKSKKK 125
Score = 30.5 bits (69), Expect = 0.92
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 11/89 (12%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKE-----------KKKKEKKKEKKKKKKKKKEKKKK 241
KK + K + KK++K K+ K + + EK K K +K E K
Sbjct: 33 KKLIKNKFDVKKDKKDKKWKVFLNNKYINNLLNLVFKNDEDEKNKYIKSQKNINSELYLK 92
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ + +
Sbjct: 93 LLKLSLEYLNNINNSSSNDSDFFSYLYEK 121
Score = 29.3 bits (66), Expect = 2.2
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 13/90 (14%)
Query: 193 KKEEEEKEEEKKEEK-------------KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
K ++++K + K + EK K K +K + K K +
Sbjct: 44 KDKKDKKWKVFLNNKYINNLLNLVFKNDEDEKNKYIKSQKNINSELYLKLLKLSLEYLNN 103
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K KKK E K
Sbjct: 104 INNSSSNDSDFFSYLYEKSKKKLNELFSKN 133
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 32.7 bits (75), Expect = 0.12
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K EEK+KE+ K+K K K ++ +KK K K KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 31.6 bits (72), Expect = 0.26
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K E+K+K++ KKK K +K KE +KK K K KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 31.6 bits (72), Expect = 0.28
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K E+K+KE+ KKK K ++ K+ ++K K K KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 30.8 bits (70), Expect = 0.52
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K +EK+KE+ KKK K +K ++ +KK K K K+
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 30.0 bits (68), Expect = 0.83
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K +EK+K++ KKK K K K+ KK K K KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 29.6 bits (67), Expect = 1.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K +EK+KE+ KK+ K K K+ +KK K K ++
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 29.2 bits (66), Expect = 1.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K EE+ KE KKK K ++ KE +KK K K K+
Sbjct: 154 KLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 29.2 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
K EEK++E+ K+K K +K ++ ++K K K KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 27.7 bits (62), Expect = 5.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K ++K+KE+ +KK K + KE +KK K K
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAV 195
Score = 27.3 bits (61), Expect = 6.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK--KKKEKKKKKEEKK 253
K +EK+KE+ KK+ K +K K+ +KK K K KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 32.8 bits (75), Expect = 0.12
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K+ KKK K KK KKK KEK ++++K + ++K +E + E+
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQ 107
Query: 271 EG 272
E
Sbjct: 108 ES 109
Score = 27.0 bits (60), Expect = 8.2
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K++R RK +K ++++KE+ +EEKK E +K +E + E+ ++
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 32.6 bits (75), Expect = 0.12
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K KEEEE+ E ++ E EKK + E+ E++ + ++ ++K+ E K
Sbjct: 16 KPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKAL 75
Query: 249 KEEKK 253
E+ K
Sbjct: 76 AEKSK 80
Score = 28.4 bits (64), Expect = 3.1
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 198 EKEEEKKE-EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK--EEKKK 254
K KE E++ + ++ + EKK + ++ +E+ + E+ ++K E K
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKA 74
Query: 255 EKKKKK 260
+K K
Sbjct: 75 LAEKSK 80
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 33.4 bits (77), Expect = 0.13
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+EKKK KK EK+ + KK K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 32.7 bits (75), Expect = 0.24
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 226 KEKKKKKKKKKEKKKKKKE--KKKKKEEKKKEKKKKK 260
+EKKK KK +++ + + KK+KE + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 32.3 bits (74), Expect = 0.31
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+KKK KK +K+ + + KK+KE + E+++
Sbjct: 85 EKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 32.3 bits (74), Expect = 0.34
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
EKKK KK +K+ + + +K+K+ + EK++
Sbjct: 85 EKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 31.5 bits (72), Expect = 0.56
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 209 KEKKKEKKKEKKKKEKKKE--KKKKKKKKKEKKKKKK 243
+EKKK KK +K+ + KK+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 31.1 bits (71), Expect = 0.65
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
EKK+ KK +K+ + +K+KE + +K++
Sbjct: 85 EKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 30.7 bits (70), Expect = 1.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+EKKK +K EK+ + + KK+K+ + ++++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 30.3 bits (69), Expect = 1.2
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+EKKK KK +K+ + + +K+K+ + ++++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 30.0 bits (68), Expect = 1.5
Identities = 7/37 (18%), Positives = 21/37 (56%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++KK+ KK +++ + +K+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 30.0 bits (68), Expect = 1.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+KK+ KK +K+ + +KK+K+ + EK++
Sbjct: 85 EKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 29.6 bits (67), Expect = 2.1
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 228 KKKKKKKKKEKKKKKKEK---KKKKEEKKKEKKKKKK 261
++KKK KK +K+ + + KK++E + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 29.2 bits (66), Expect = 2.7
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
++KKK +K +K+ + + KK K+ + ++++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 29.2 bits (66), Expect = 2.7
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++KKK KK +K + + K++K+ + EK++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 29.2 bits (66), Expect = 2.9
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+KK+ KK+ +K+ + KK+K+ + +K++
Sbjct: 85 EKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 29.2 bits (66), Expect = 3.3
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++KKK +K +K + KK+KE + ++ R
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.4 bits (64), Expect = 4.9
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
EK++ KK+ +K+ + +KK+KE + +K++
Sbjct: 85 EKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.0 bits (63), Expect = 7.1
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
++KKK K+ +K+ + +KK+++ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 27.6 bits (62), Expect = 8.5
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK 212
Y KK+ K+ KR R + ++K +E + +K++
Sbjct: 81 TYFREKKKY-KKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 33.4 bits (76), Expect = 0.13
Identities = 26/115 (22%), Positives = 45/115 (39%)
Query: 157 KREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK 216
KRE + + + K+KR+ EE EEEK K K K
Sbjct: 78 KREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKA 137
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K ++K+E ++ +++E+ K+K K K K + K+K + +
Sbjct: 138 KAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGT 192
Score = 29.9 bits (67), Expect = 1.3
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE-KKKEKKKKKKKKKE 237
R K+ RKR + E K EE E ++KEK K + +E K++ K K
Sbjct: 16 RRAKEEARKRLVAKHGAEISKLEE--ENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAA 73
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+K+E ++ E++K K K K K K ++
Sbjct: 74 LAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQ 111
Score = 29.9 bits (67), Expect = 1.4
Identities = 27/120 (22%), Positives = 48/120 (40%)
Query: 148 SRTARPKDLKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEK 207
++ A KRE + + + K+KR+ EE EEE++ +K
Sbjct: 103 AKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDK 162
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+K K K K K ++K + + ++ ++EK K K + K K K+K
Sbjct: 163 EKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQK 222
Score = 28.8 bits (64), Expect = 3.8
Identities = 22/96 (22%), Positives = 43/96 (44%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K + + K K++ E EE +EEK K K K K ++K++ ++
Sbjct: 94 KAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEV 153
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+++++ +K+K K + K K K+K + G
Sbjct: 154 TEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAG 189
Score = 27.6 bits (61), Expect = 7.8
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEE-EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K+E RK+ K + K EEE E EK K + E+ K + K + K+K
Sbjct: 19 KEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQK 78
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+E ++ E++K K + K K K K+K EG
Sbjct: 79 REGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREG 115
Score = 27.6 bits (61), Expect = 9.0
Identities = 21/88 (23%), Positives = 37/88 (42%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ + K K++ E EE +EEK K K K K K ++K++ ++
Sbjct: 60 KRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEV 119
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+++K K K K + K+K
Sbjct: 120 TEEEKAAAKAKAAAAAKAKAAALAKQKR 147
>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
Length = 312
Score = 33.1 bits (76), Expect = 0.13
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
K+ + K K+KE+ + +K +K K+K ++KKKK E+ +EK
Sbjct: 114 IKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEKTNEEKS 165
Score = 32.3 bits (74), Expect = 0.25
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KE + ++ K K+K++ + EK +K K+K E+KKK+ +K ++K
Sbjct: 110 KESRIKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEKTNEEK 164
Score = 32.3 bits (74), Expect = 0.25
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK--KKEKKKKKKKKEK 265
K KK K+ + K+ K K+K++ + EK +K ++K EKKKKK +K
Sbjct: 102 KFGKKFFGKESRIKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEKTN 161
Query: 266 KKKK 269
++K
Sbjct: 162 EEKS 165
Score = 30.8 bits (70), Expect = 0.67
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKE--KKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ KK ++ K+ + K K+KE+ + +K +K K+K EKKKKK EK
Sbjct: 102 KFGKKFFGKESRIKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEKTN 161
Query: 248 K 248
+
Sbjct: 162 E 162
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 33.1 bits (76), Expect = 0.13
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
R KK+ ++ +KK K + + + KK +K ++K + +K K ++ +K
Sbjct: 302 RPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQKVKNRRARK 361
Query: 250 EEKKKEKKKKKKKKEKKKKK 269
+ KK K K K K
Sbjct: 362 KAKKARLAKVAKALYKSIKA 381
Score = 27.3 bits (61), Expect = 9.4
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK-----KKKKKKKKEKKKKKKEKKKKKE 250
EE + + +KK K++ +KK K + + + KK +K ++K K +K
Sbjct: 295 EEVQAVLRPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQKV 354
Query: 251 EKKKEKKKKKKKKEKKKKKD 270
+ ++ +KK KK + K K
Sbjct: 355 KNRRARKKAKKARLAKVAKA 374
>gnl|CDD|205219 pfam13038, DUF3899, Domain of unknown function (DUF3899). Putative
Tryptophanyl-tRNA synthetase.
Length = 92
Score = 31.1 bits (71), Expect = 0.14
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK 212
RR R+ K+++ EE++ K+ KKK+
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKKKKYS 67
Score = 30.8 bits (70), Expect = 0.16
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK 217
RR ++ +K+E++ EE + K+ KK+K
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKKKKYS 67
Score = 30.0 bits (68), Expect = 0.31
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
++ ++ EKK+K ++ + KK KKKK
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKKKKYS 67
Score = 30.0 bits (68), Expect = 0.32
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK 216
RR R+ KKE++ EE++ KK KKK+
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKKKKYS 67
Score = 29.6 bits (67), Expect = 0.44
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ + +KKEK +E++ KK KKKK
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKKKKYSVFT 70
Score = 29.2 bits (66), Expect = 0.64
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++ ++ +KK+K+ ++ E +K KKKK
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKKKKYS 67
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777). This is
a family of eukaryotic proteins of unknown function.
Some of the proteins in this family are putative nucleic
acid binding proteins.
Length = 158
Score = 32.2 bits (73), Expect = 0.14
Identities = 17/99 (17%), Positives = 57/99 (57%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
G + R +R R+R R R ++ E+ E+ +++++++ + + ++ ++ +
Sbjct: 2 GRSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRS 61
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ +++++K+++++ +E KK++++K K++ EG+
Sbjct: 62 RSRSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGK 100
Score = 28.7 bits (64), Expect = 2.3
Identities = 15/89 (16%), Positives = 49/89 (55%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G+ R +R R+R+R R +E + + + + ++ + + + + +++ +K++
Sbjct: 16 GRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSRSPSRRRDRKRE 75
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++K ++ +K+++++ K+E + K +E
Sbjct: 76 RDKDAREPKKRERQKLIKEEDLEGKSDEE 104
Score = 28.3 bits (63), Expect = 3.0
Identities = 19/95 (20%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ RR+ R R R R+ ++ E + E ++ +++ + + + ++ + ++ + + + +
Sbjct: 10 RRSRRRGRSRSRDRRERRRERSRSRE-RDRRRRSRSRSPHRSRRSRSPRRHRSRSRSPSR 68
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +K++ K +E KK+E++K K+++ + K DE
Sbjct: 69 RRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDE 103
Score = 27.5 bits (61), Expect = 5.1
Identities = 16/85 (18%), Positives = 40/85 (47%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
G + R ++R R R R+R + + ++ + + + +++++K++
Sbjct: 16 GRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSRSPSRRRDRKRE 75
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEK 256
+ K + KK++ +K KEE + K
Sbjct: 76 RDKDAREPKKRERQKLIKEEDLEGK 100
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 32.3 bits (74), Expect = 0.14
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
K E+ + KK K+K K+ ++K+ + EK +KK
Sbjct: 86 KSSEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 31.9 bits (73), Expect = 0.23
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K+E E + + +E + KK K+K K ++KK + EK +KK
Sbjct: 74 KDESEAAPDVVPKSSEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 29.2 bits (66), Expect = 1.5
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ + KK K++ K+ E+KK + EK +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 27.7 bits (62), Expect = 5.1
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++ + +K K+K K+ + KK + +K +KK E
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKKLAE 132
Score = 26.9 bits (60), Expect = 8.6
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
K ++ + KK K+K K+ E+KK + E+ +K
Sbjct: 86 KSSEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRK 128
Score = 26.9 bits (60), Expect = 9.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K EE + +K K+K K E+KK + +K +KK
Sbjct: 86 KSSEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 32.2 bits (74), Expect = 0.14
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+ E + + + K + KK+K + + K+ E K K+ E + + +
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
Score = 29.9 bits (68), Expect = 0.77
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
E + + E + + K + KKEK + + + K+ + + K+ + E
Sbjct: 55 ELAADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
Score = 29.1 bits (66), Expect = 1.8
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKK---KKKKKEKKKKKDEGRR 274
+ E + E + K KKEK + + K+ E K K+ E
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
Score = 28.7 bits (65), Expect = 2.4
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E + + + + K + KK+K + + K+ + K KE + + D
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
Score = 28.3 bits (64), Expect = 2.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+ E + K K+EK + + + K+ E K KE + E
Sbjct: 65 AAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
Score = 27.9 bits (63), Expect = 3.7
Identities = 7/50 (14%), Positives = 22/50 (44%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ E + + + K KK+K + + +E + + K+ + + + +
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQH 111
Score = 27.5 bits (62), Expect = 4.4
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ + + + + K+EK + + + K+ + K K+ +
Sbjct: 65 AAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
Score = 27.5 bits (62), Expect = 4.6
Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKK-KKKKKEKKKKKKEKKKKKEE 251
+ E + + + K + K++K + + + KE + K KE + + +
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
Score = 27.5 bits (62), Expect = 5.3
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
E + + E + K + K++K + + + K+ E K KE + + +
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
Score = 27.5 bits (62), Expect = 5.5
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ E E + + K KKEK + + ++ + K K+ E + +
Sbjct: 59 DLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
Score = 26.8 bits (60), Expect = 8.0
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
E E + + + K + +K+K + E K+ + K KE + + +
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 33.3 bits (77), Expect = 0.14
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 166 GDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ LE +KE + KR RK+ KE+ EK + +E +E+ K +KE + +
Sbjct: 191 KERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQ--REYYLREQLKAIQKELGEDDDD 248
Query: 226 KEKKKKKKKKKEKKKKKKEKKKK--KEEKKKEK 256
K++ ++ ++K EK K KE K+K KE KK E
Sbjct: 249 KDEVEELREKIEKLKLPKEAKEKAEKELKKLET 281
Score = 29.1 bits (66), Expect = 2.9
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEK-KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+KE + + EK+ KK +++ EK ++E +E+ K +K+ + + K + +E ++K E+
Sbjct: 202 EKEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEK 261
Query: 252 KK--KEKKKKKKKKEKKKKK 269
K KE K+K +K+ KK +
Sbjct: 262 LKLPKEAKEKAEKELKKLET 281
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 32.7 bits (75), Expect = 0.15
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
E K ++K K+ EK++EK+++ +K+ ++ + KK +K+ +K + K E K K K +
Sbjct: 146 ESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKAR 203
Score = 32.7 bits (75), Expect = 0.16
Identities = 15/44 (34%), Positives = 31/44 (70%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K ++K K+ EK+++K+++ +KK ++ + KK EK+ EK++ K
Sbjct: 148 KSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 31.9 bits (73), Expect = 0.27
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K KE +K+E+K+E+ +KK ++ + KK EK+ +K + K + K K K +
Sbjct: 153 KLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKAR 203
Score = 31.1 bits (71), Expect = 0.47
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
KE EK+EEK+ E+ EKK E+ + KK EK+ +K++ K + K K K + E
Sbjct: 155 KEAEKQEEKQ-EQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKARNE 205
Score = 30.8 bits (70), Expect = 0.64
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
RK +E EK+EEK+E+ EKK E+ + KK EK+ EK++ K
Sbjct: 152 RKLKEAEKQEEKQEQSP-EKKLERSRSSKKIEKEVEKRQAK 191
Score = 30.4 bits (69), Expect = 0.75
Identities = 14/46 (30%), Positives = 31/46 (67%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K KE +K+++K+++ +KK E+ + ++ +KE +K++ K + K K
Sbjct: 153 KLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLK 198
Score = 30.4 bits (69), Expect = 0.86
Identities = 13/44 (29%), Positives = 31/44 (70%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K ++K K+ +++++K+++ +KK E+ + KK +K+ EK++ K
Sbjct: 148 KSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 30.4 bits (69), Expect = 0.88
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K KE +K+++K+E+ EKK ++ + +K +K+ EK++ K + K K K +
Sbjct: 153 KLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKAR 203
Score = 30.4 bits (69), Expect = 0.94
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
RK K +++EEK+E+ E+K + + KK EK+ EK++ K
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKE-VEKRQAK 191
Score = 29.6 bits (67), Expect = 1.3
Identities = 16/58 (27%), Positives = 37/58 (63%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K +++ K+ EK++EK+++ +KK ++ + +K +K+ EK++ K + K K K + +
Sbjct: 148 KSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKARNE 205
Score = 28.1 bits (63), Expect = 4.1
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK-KKKKEKKKKKKEKKKKKEEKKK 254
E K E+K K+ EK++EK+++ +K+ ++ + KK +K+ EK++ K + K K K +
Sbjct: 146 ESKSAERKL-KEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKAR 203
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 32.5 bits (74), Expect = 0.15
Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 22/106 (20%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE------ 237
R ++++++ +++ E E K K + + + +K+K+E+K K++K++
Sbjct: 109 REQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKERLVAEAREH 168
Query: 238 ----------------KKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
++K+K+EKKK KE K++EK++K+
Sbjct: 169 FGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRREKEEKRMAALVAA 214
Score = 30.9 bits (70), Expect = 0.57
Identities = 24/114 (21%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E ++ R+ + EE E++KE++ + + +E + K + + + +K+++
Sbjct: 88 EELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKR 147
Query: 239 KKKKKEKKKKKE------------------EKKKEKKKKKKKKEKKKKKDEGRR 274
++K + K++KE + +E ++K+K+EKKK K+ RR
Sbjct: 148 EQKARAAKERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRR 201
Score = 30.2 bits (68), Expect = 0.97
Identities = 15/77 (19%), Positives = 44/77 (57%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
++ + ++EE E + ++ ++++K+KE +++ ++ E K K + + +
Sbjct: 84 AEKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQ 143
Query: 246 KKKKEEKKKEKKKKKKK 262
K+K+E+K + K++K++
Sbjct: 144 KRKREQKARAAKERKER 160
Score = 29.4 bits (66), Expect = 1.6
Identities = 18/75 (24%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEK---KKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
R +KRKR++K ++ +E+ + +E + + + ++ ++++K++KKK KE K+
Sbjct: 141 RAQKRKREQKARAAKERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKR 200
Query: 241 KKKEKKKKKEEKKKE 255
++KE+K+
Sbjct: 201 REKEEKRMAALVAAA 215
Score = 29.0 bits (65), Expect = 2.0
Identities = 13/75 (17%), Positives = 41/75 (54%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E+ E+ EE++ E + ++ ++++++K+ +++ ++ + K K + +
Sbjct: 84 AEKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQ 143
Query: 254 KEKKKKKKKKEKKKK 268
K K+++K + K++K
Sbjct: 144 KRKREQKARAAKERK 158
Score = 28.2 bits (63), Expect = 3.8
Identities = 12/77 (15%), Positives = 44/77 (57%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
++ +E EE+E E + ++ ++++K+K+ +++ ++ + K K + + +
Sbjct: 84 AEKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQ 143
Query: 250 EEKKKEKKKKKKKKEKK 266
+ K+++K + K+++++
Sbjct: 144 KRKREQKARAAKERKER 160
Score = 27.9 bits (62), Expect = 5.5
Identities = 21/102 (20%), Positives = 48/102 (47%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K ER+ R EE EK EE ++E+++ + E+ +E++K+K+
Sbjct: 57 LTEKYERKLFGRYGLASGVPPEELFPSAEKLEELEEEEREWYPSLNQMLEENREQQKEKE 116
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+++ ++ + K K + + +K+K ++K + R+
Sbjct: 117 ARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERK 158
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 32.5 bits (74), Expect = 0.15
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
E+ E K+ KK+K +KK+ KK KKK+K+K++ + ++ ++ ++ +KK +
Sbjct: 41 EDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDY 100
Query: 257 KKKKKKKEKKKKKDEGR 273
+ K + + E
Sbjct: 101 ELPKVQNTAAEVNHEDV 117
Score = 30.9 bits (70), Expect = 0.43
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
++ E+ + KK KKK+ KKK KK +KKKK+K++ + ++ ++ E+
Sbjct: 36 DDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEEND 95
Query: 255 EKKKKKKKKEKKKKKDE 271
+K + K + +
Sbjct: 96 KKVDYELPKVQNTAAEV 112
Score = 30.2 bits (68), Expect = 0.76
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
++ ++ E + K+ K+KK +KK+ KK KKKK++K++ E ++ +
Sbjct: 30 SVDKVNDDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSE 89
Query: 255 EKKKKKKKKEKKKKKDEG 272
E ++ KK + + K +
Sbjct: 90 ENEENDKKVDYELPKVQN 107
Score = 30.2 bits (68), Expect = 0.90
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK +K++ RK+K K+ ++K++EK+E + ++ E+ ++ KK + K +
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQN 107
Query: 237 EKKKKKKE 244
+ E
Sbjct: 108 TAAEVNHE 115
Score = 29.8 bits (67), Expect = 0.98
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
R K E ++ ++ E + K+ KK+K +KKK KK +KKKK+KE+ +
Sbjct: 21 RAHVKSTTESVDKVNDDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Query: 250 EEKKKEKKKKKKKKEKK 266
++ ++ ++ +KK
Sbjct: 81 AAEELSDSEENEENDKK 97
Score = 29.8 bits (67), Expect = 1.2
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K ++ E E K+ K+KK +KK+ K+ KKKKK+K+E + E+ EE +
Sbjct: 33 KVNDDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENE 92
Query: 254 KEKKKKKKKKEKK 266
+ KK + K
Sbjct: 93 ENDKKVDYELPKV 105
Score = 29.4 bits (66), Expect = 1.4
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K KK++ R++K +K KK+++EKEE + ++ E+ +E KK + K +
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNT 108
Query: 234 KKKEKK 239
+
Sbjct: 109 AAEVNH 114
Score = 29.0 bits (65), Expect = 1.8
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ K E +K + + E +K +KKK +K+K KK KKK+K+K++ +
Sbjct: 21 RAHVKSTTESVDKVNDDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Query: 247 KKKEEKKKEKKKKKKKKEKKKK 268
+E E+ ++ KK +
Sbjct: 81 AAEELSDSEENEENDKKVDYEL 102
Score = 28.2 bits (63), Expect = 3.7
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K +K+K +K+ KK +KKK++K+E + ++ E+ ++ KK + + K +
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNT 108
Query: 247 KKKEEK 252
+
Sbjct: 109 AAEVNH 114
Score = 28.2 bits (63), Expect = 4.0
Identities = 14/66 (21%), Positives = 33/66 (50%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K ++K+ RKK+ +K ++KK+EK++ + ++ +E ++ KK + + +
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNT 108
Query: 242 KKEKKK 247
E
Sbjct: 109 AAEVNH 114
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting
Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are
mainly expressed in hematopoietic cells and are involved
in the regulation of cell adhesion and motility.
Mutations in PSTPIPs have been shown to cause
autoinflammatory disorders. PSTPIP1 contains an
N-terminal F-BAR domain, PEST motifs, and a C-terminal
SH3 domain, while PSTPIP2 contains only the N-terminal
F-BAR domain. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 239
Score = 32.4 bits (74), Expect = 0.16
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKK-EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ +EE EK EE +E++K+E+KK E ++ +K KK+ KK K KK ++K +EK K +
Sbjct: 81 QSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAE 140
Query: 250 EEKKKEKKKKKKKKEKKKKK 269
+ +K + K+ +K KK
Sbjct: 141 QAYEKSSSGAQPKEAEKLKK 160
Score = 30.1 bits (68), Expect = 1.1
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 179 ERRKQRRRKRKRKRKKEEE---EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
E+ ++ R K+K +RKK E+ ++ KKE KK K +K E+K +EK K ++ +K
Sbjct: 88 EKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSS 147
Query: 236 KEKKKKKKEKKKKKEEKKKE 255
+ K+ EK KKK + K
Sbjct: 148 SGAQPKEAEKLKKKAAQCKT 167
Score = 29.4 bits (66), Expect = 1.6
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKK--EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
Q R+ K ++ E+++EE+K E+ K +K KK+ KK K K+ ++K ++K+K +
Sbjct: 81 QSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAE 140
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKK 266
+ EK + K+ +K KKK + K
Sbjct: 141 QAYEKSSSGAQPKEAEKLKKKAAQCK 166
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6
Adenine-specific DNA methylases.
Length = 219
Score = 32.4 bits (74), Expect = 0.16
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K +K K +K + KK+ + K + + EK+
Sbjct: 106 KTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDFPRVQPSEKESGG 159
Score = 30.8 bits (70), Expect = 0.53
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK-KEEKKKEKKKKKKKKEK 265
K +K + K ++ K KK+ E K + EK+ +K
Sbjct: 106 KTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDFPRVQPSEKESGGHPTQK 164
Score = 27.4 bits (61), Expect = 7.9
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K KK K +K++ KK + K D
Sbjct: 106 KTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWD 146
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 32.8 bits (75), Expect = 0.16
Identities = 24/90 (26%), Positives = 57/90 (63%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ +RK ++ E + ++KEK+ ++++EKK+ E++K+KKK+ K +++
Sbjct: 255 ENLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRF 314
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ + +K +E++KE+ K +K+EK+++K+
Sbjct: 315 EANDPAQKLQEERKEQLAKLRKEEKEREKE 344
Score = 31.7 bits (72), Expect = 0.36
Identities = 18/89 (20%), Positives = 41/89 (46%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E+ ++RR + + K K ++ +++E+KK K + + + KK K K
Sbjct: 68 EQNEERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKPVP 127
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K K K ++++ K+K + + ++
Sbjct: 128 KSIYIPLLKDKMQEEELKRKIRVQMRAQE 156
Score = 29.7 bits (67), Expect = 1.6
Identities = 23/78 (29%), Positives = 51/78 (65%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ K R +RK K KE++EK+E ++ +KKK++ K K++ + +K ++++K++
Sbjct: 271 WESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQ 330
Query: 237 EKKKKKKEKKKKKEEKKK 254
K +K+EK+++KE +++
Sbjct: 331 LAKLRKEEKEREKEYEQE 348
Score = 29.4 bits (66), Expect = 1.9
Identities = 24/91 (26%), Positives = 58/91 (63%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K RRK +K + + E ++KE K++++KKE ++ KKKK++ K K++ +
Sbjct: 258 KPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEAN 317
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ +K +E++K++ K ++++K+++K+ +++
Sbjct: 318 DPAQKLQEERKEQLAKLRKEEKEREKEYEQE 348
Score = 28.6 bits (64), Expect = 3.8
Identities = 20/87 (22%), Positives = 42/87 (48%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ERR++ R K K ++ ++EE+KK K + + + K+ K K K
Sbjct: 70 NEERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKPVPKS 129
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K+K +++E K+K + + + ++
Sbjct: 130 IYIPLLKDKMQEEELKRKIRVQMRAQE 156
Score = 28.6 bits (64), Expect = 4.0
Identities = 24/88 (27%), Positives = 48/88 (54%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
R ++ EE K ++K KK E K + E+K+K+ K++++KK+ +++KK
Sbjct: 242 RTYLDQENISAGEENLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKK 301
Query: 248 KKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK+E + K++ + + +K E R+
Sbjct: 302 KKKEMAPKVKQRFEANDPAQKLQEERKE 329
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 32.4 bits (74), Expect = 0.16
Identities = 14/88 (15%), Positives = 35/88 (39%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Y + + + K + +++ ++ +K+ + ++ E++ ++ K
Sbjct: 11 YALSYSLGLQLGQSLAELKLRLDKDALLAGLEDALALVQKEAALEALQRAEQRLQQAAKA 70
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K+ K+ E K E+ KEK K
Sbjct: 71 KRAKDAAANAAEGKAFLEKNAKEKGVKT 98
Score = 31.6 bits (72), Expect = 0.29
Identities = 14/77 (18%), Positives = 29/77 (37%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+KE + ++ E++ ++ K K+ + + K +K KEK K +
Sbjct: 45 LALVQKEAALEALQRAEQRLQQAAKAKRAKDAAANAAEGKAFLEKNAKEKGVKTLPSGLQ 104
Query: 249 KEEKKKEKKKKKKKKEK 265
+ K KK +
Sbjct: 105 YKVLKAGDGAAPKKGDT 121
Score = 29.3 bits (66), Expect = 1.6
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+ + + ++ E +KE E ++ +++ ++ K K K + K
Sbjct: 26 AELKLRLDKDALLAGLEDALALVQKEAALEALQRAEQRLQQAAKAKRAKDAAANAAEGKA 85
Query: 258 KKKKKKEKKKKKD 270
EK K+
Sbjct: 86 FL----EKNAKEK 94
Score = 27.4 bits (61), Expect = 6.4
Identities = 14/74 (18%), Positives = 29/74 (39%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
++E E ++ +++ ++ K K+ K + K +K K++ K + K
Sbjct: 48 VQKEAALEALQRAEQRLQQAAKAKRAKDAAANAAEGKAFLEKNAKEKGVKTLPSGLQYKV 107
Query: 258 KKKKKKEKKKKKDE 271
K KK D
Sbjct: 108 LKAGDGAAPKKGDT 121
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 32.2 bits (74), Expect = 0.17
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KEE + KK E+ EK E +E K+ + K+ +++ +E +KK ++ +K+K+ K K
Sbjct: 33 KEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLKNLK 92
Query: 264 EKKKKKDE 271
+ K+ ++
Sbjct: 93 ARLKELEK 100
Score = 32.2 bits (74), Expect = 0.19
Identities = 22/86 (25%), Positives = 45/86 (52%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE + ++ + K E +E K+ + +K +E+ +E +KK K EK K+ K +
Sbjct: 33 KEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLKNLK 92
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ K+ EK+ K + + E +++ +K
Sbjct: 93 ARLKELEKELKNLKWESEVLEQRFEK 118
Score = 32.2 bits (74), Expect = 0.20
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+EE E KK E+ EK + +E K+ + KK ++E ++ +K+ K +++K+ K K
Sbjct: 33 KEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLKNLK 92
Query: 260 KKKKEKKKKKDE 271
+ KE +K+
Sbjct: 93 ARLKELEKELKN 104
Score = 31.8 bits (73), Expect = 0.25
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 193 KKEEEEKEEEKKEEKKKEK-----KKEKKK-----EKKKKEKKKEKKKKK--KKKKEKKK 240
K +EE E KK E+ EK +E K+ +K ++E ++ +KK K +K K+ K
Sbjct: 30 KSLKEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLK 89
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K + K+ E++ K K + + E++ +K E R
Sbjct: 90 NLKARLKELEKELKNLKWESEVLEQRFEKVERERD 124
Score = 29.1 bits (66), Expect = 1.7
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 167 DNLEY--GYKGGKKERRKQRRRKRKR--------KRKKEEEEKEEEKKEEKKKEKK---K 213
+NLE K E +K K KR E +K EE+ EE +K+ K K
Sbjct: 24 NNLELIKSLKEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEK 83
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+K+ K K + KE +K+ K K + + +++ +K E ++ E K
Sbjct: 84 DKQSLKNLKARLKELEKELKNLKWESEVLEQRFEKVERERDELYDK 129
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 32.5 bits (74), Expect = 0.18
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+ E EEE EE + E + E + E+K +++ E +++ KK E++++K E
Sbjct: 211 ESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGE 270
Query: 252 K 252
+
Sbjct: 271 R 271
Score = 30.6 bits (69), Expect = 0.72
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
EEE EE ++E + E + E+K ++ E +++ K+ ++++EK +
Sbjct: 211 ESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGE 270
Query: 248 KKE 250
+ E
Sbjct: 271 RPE 273
Score = 29.9 bits (67), Expect = 1.3
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E E E +EE +E + E + E + +EK +++ + ++++ +K ++EE+K E
Sbjct: 211 ESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGE 270
Query: 256 K 256
+
Sbjct: 271 R 271
>gnl|CDD|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated 2).
NSA2 appears to be a protein required for the
maturation of 27S pre-rRNA in yeast; it has been
characterized in mammalian cells as a nucleolar protein
that might play a role in the regulation of the cell
cycle and in cell proliferation.
Length = 257
Score = 32.6 bits (75), Expect = 0.18
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
RKRKKE E + K+ +K K K KK+ ++K + KK K +E+ K+K K
Sbjct: 20 RKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEERNVKQKVDDKVP 79
Query: 250 EE 251
E
Sbjct: 80 EG 81
Score = 29.5 bits (67), Expect = 1.7
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+KKE ++ K+ KK +K + K K KK+ ++K + KK K E++ K +
Sbjct: 21 KRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEERNVKQK 73
Score = 28.4 bits (64), Expect = 4.3
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ RKR +R EE +++KKE ++ K+ +K ++ + K K KK+ K
Sbjct: 5 ELHRKRHGRRLDHEE-----------RKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYK 53
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ + KK K E++ K+K + K +
Sbjct: 54 EKIQMKKTIKMHEERNVKQKVDDKVPE 80
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 32.9 bits (76), Expect = 0.18
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEK----KKEKKKEKKKKEKKKEKKKK 231
R KR K EEE+ +E++EE + + + +++K E+++ ++K+
Sbjct: 168 RYKRPIKLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKR 218
Score = 27.5 bits (62), Expect = 7.6
Identities = 10/52 (19%), Positives = 26/52 (50%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
+R K+ + + K +EE+EE + + + + +K +E++ +K+
Sbjct: 167 DRYKRPIKLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKR 218
>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional.
Length = 307
Score = 32.8 bits (75), Expect = 0.18
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
K + +++ EE + K K +K+ + + KKKKK + K++K+
Sbjct: 252 KPRLRKQIAEEFAKNPPKAYKSPSGRKDVTPSQNQAIASLPKKKKKNRNAGKQRKR 307
Score = 30.1 bits (68), Expect = 1.2
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K + +K+ ++ K K K +K + + KKKKK + K++K
Sbjct: 252 KPRLRKQIAEEFAKNPPKAYKSPSGRKDVTPSQNQAIASLPKKKKKNRNAGKQRK 306
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 30.7 bits (70), Expect = 0.18
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
E+E + KE E K+ +E+++KE K++ + K+KKK+K +KK+
Sbjct: 11 EEEVKLKERIWDELNKDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRD 61
Score = 28.8 bits (65), Expect = 0.98
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+++++KE K+K +E KKKKK+K KKK+ + G
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 28.4 bits (64), Expect = 1.5
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++E K KE+ ++ K +++++K+ K+K + K+KKK+K KK++ +
Sbjct: 11 EEEVKLKERIWDELNKDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGP 65
Score = 27.6 bits (62), Expect = 2.2
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
E K+ +++++KE K++ + +KKKK+K KK++ +
Sbjct: 23 ELNKDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 26.4 bits (59), Expect = 5.5
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+E+EEKE ++K ++ K+KKK K KK++ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 26.4 bits (59), Expect = 7.1
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
K+ E++EEK+ ++K ++ K+KKK++ KK++ +
Sbjct: 26 KDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 31.8 bits (72), Expect = 0.18
Identities = 34/98 (34%), Positives = 62/98 (63%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K + QR +K + KKE + E++ +++ EK+ + K+++K EKKKK +KKE
Sbjct: 20 KVKEIQRNLTKKARLKKEYLKLLEKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKE 79
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K++K ++++KE K++K+ +K + KKK+K+ RRR
Sbjct: 80 IAKQRKREQREKELAKRQKELEKIELSKKKQKERERRR 117
Score = 28.7 bits (64), Expect = 2.2
Identities = 27/78 (34%), Positives = 55/78 (70%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
GY +KE +++ + K RK E+++K +EKKE K+ K+++++KE K++K+ EK +
Sbjct: 46 GYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIEL 105
Query: 232 KKKKKEKKKKKKEKKKKK 249
KKK+++++++++K KK
Sbjct: 106 SKKKQKERERRRKKLTKK 123
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 32.1 bits (73), Expect = 0.19
Identities = 22/94 (23%), Positives = 38/94 (40%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE + + ++ + E + EK+E KK K + E K K + +
Sbjct: 110 KELTDEEKEPYYKEANSDRERYQREKEEYNKKLPNKAPIGPFIENEPKIRPKVEGPSPDK 169
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ + K + E KKKK + KK K+E
Sbjct: 170 ALVEETKIISKAWSELDESKKKKYIDKYKKLKEE 203
Score = 32.1 bits (73), Expect = 0.19
Identities = 15/90 (16%), Positives = 37/90 (41%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
++ +E ++E+E+ +K K + + + + + + K ++ K
Sbjct: 118 EPYYKEANSDRERYQREKEEYNKKLPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKI 177
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K E + +KKK K +K K++ +
Sbjct: 178 ISKAWSELDESKKKKYIDKYKKLKEEYDSF 207
Score = 27.5 bits (61), Expect = 5.7
Identities = 18/90 (20%), Positives = 36/90 (40%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
YK +R + +R K + +K + E + K + K + K ++ K K
Sbjct: 121 YKEANSDRERYQREKEEYNKKLPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISK 180
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ + KKK+ K ++ K+E +
Sbjct: 181 AWSELDESKKKKYIDKYKKLKEEYDSFYPE 210
>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein
[Intracellular trafficking and secretion].
Length = 2552
Score = 32.9 bits (75), Expect = 0.19
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK---KEKKKKEKKKEKKK 230
K KE+ + + EK + KE+ ++++ K +KK ++
Sbjct: 317 KSTPKEKPLEWFKYIILVVLDSIHEKRYHWTWKYFKERCEDRRAYMKIIRKKYLNEQLSA 376
Query: 231 KKKKKKEKKKKKKEKKKK---------KEEKKKEKKKKKKK 262
K+ EK++ + K K K + K
Sbjct: 377 DLSKELEKRELTYDLIKYRSRLFRSLAKRRNSIYLKPQTHK 417
Score = 29.9 bits (67), Expect = 2.0
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKK----------EKKKEKKKEKKKKEKKKEKKKKK 232
Q K+++ K + +EK E K +K+ K KE+ ++++
Sbjct: 303 QVVMKQQKFLKYRPKSTPKEKPLEWFKYIILVVLDSIHEKRYHWTWKYFKERCEDRRAYM 362
Query: 233 KKKKEK-KKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K ++K ++ KE +K+E K +
Sbjct: 363 KIIRKKYLNEQLSADLSKELEKRELTYDLIKYRSR 397
Score = 29.1 bits (65), Expect = 3.1
Identities = 13/76 (17%), Positives = 30/76 (39%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
KR + +E+ E+++ K +KK ++ K+ +K++ K + +
Sbjct: 342 KRYHWTWKYFKERCEDRRAYMKIIRKKYLNEQLSADLSKELEKRELTYDLIKYRSRLFRS 401
Query: 251 EKKKEKKKKKKKKEKK 266
K+ K + K
Sbjct: 402 LAKRRNSIYLKPQTHK 417
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
CCCH-type Zn-finger protein [General function prediction
only].
Length = 299
Score = 32.4 bits (73), Expect = 0.19
Identities = 16/75 (21%), Positives = 41/75 (54%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+K +K++E K+ ++ +K+ + K K K + K + ++ + K++ +KK+
Sbjct: 2 PPKKMAKKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKE 61
Query: 260 KKKKEKKKKKDEGRR 274
K + E+K+++ E +
Sbjct: 62 KMRMEEKRREPEKQV 76
Score = 28.1 bits (62), Expect = 5.2
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
KK KK+++ K+ ++ +K+ + K K K K + K+ + K++ +KK+
Sbjct: 2 PPKKMAKKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKE 61
Query: 269 KDEGRRR 275
K +
Sbjct: 62 KMRMEEK 68
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 31.4 bits (72), Expect = 0.19
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 191 KRKKEEEEK-----EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
K+E ++K E E+K E+++++KK K+E ++++ E+ K K K++ +
Sbjct: 63 WLKEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 31.0 bits (71), Expect = 0.33
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 209 KEKKKEK-----KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
KE++ +K + E+K + ++ EKK+ K++ + +K +E K ++ K+K++
Sbjct: 65 KEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEP 120
Score = 28.7 bits (65), Expect = 1.8
Identities = 11/59 (18%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 213 KEKKKEKKKKE---KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K+E+ K + E+K ++++ ++K+ K++ +++K ++ K K+K++
Sbjct: 62 AWLKEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEP 120
Score = 27.6 bits (62), Expect = 4.0
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
RK R + ++KR K E E+ + E+ + + K+K++ +
Sbjct: 78 AERKAEREEDEKKRLKRENER-RKALGEEPLKSLDDLPKDKEEPD 121
Score = 26.8 bits (60), Expect = 8.0
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 177 KKER--RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKE 214
K ER +++R KR+ +R+K E+ + ++ K+K++
Sbjct: 81 KAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEP 120
Score = 26.8 bits (60), Expect = 8.3
Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 226 KEKKKKKKKK-----KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+++ K + ++K ++E+ +KK K++ +++K +E K D+
Sbjct: 62 AWLKEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDD 112
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 33.0 bits (75), Expect = 0.19
Identities = 13/29 (44%), Positives = 28/29 (96%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
EEEE+EEE++EE+++E+++E+++E++ +E
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 31.1 bits (70), Expect = 0.65
Identities = 14/42 (33%), Positives = 34/42 (80%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+EEEE+EEE++EE+++E+++E+++E+ ++ E + ++K+
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 31.1 bits (70), Expect = 0.70
Identities = 14/39 (35%), Positives = 31/39 (79%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
++EEEE+EEE++EE+++E+++E+ +E E + ++K+
Sbjct: 867 EEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 30.7 bits (69), Expect = 0.85
Identities = 14/40 (35%), Positives = 32/40 (80%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
++EEEE+EEE++EE+++E+++E++ E+ + E ++K+
Sbjct: 866 EEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 30.7 bits (69), Expect = 0.93
Identities = 12/29 (41%), Positives = 28/29 (96%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
++EEEE+EEE++EE+++E+++E+++E ++
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 28.4 bits (63), Expect = 4.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEK 207
G GG E ++ + + + ++EEEE+EEE++ E+
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 28.4 bits (63), Expect = 4.7
Identities = 10/31 (32%), Positives = 29/31 (93%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ EE+EEE++EE+++E+++E+++E++++ ++
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 28.4 bits (63), Expect = 4.8
Identities = 10/31 (32%), Positives = 29/31 (93%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+ E+EEE++EE+++E+++E+++E++++E ++
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 28.0 bits (62), Expect = 6.0
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK---EKKKKKKKKKEKK 239
+ +R + + E E E EE E ++E + E K + + + ++K +++ E +
Sbjct: 639 EHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGE 698
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+ KE K E + E+ + + + E + +DEG
Sbjct: 699 IEAKEADHKGET-EAEEVEHEGETEAEGTEDEG 730
Score = 28.0 bits (62), Expect = 6.2
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 148 SRTARPKDLKREWLWGGCGDNLEY-GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEE 206
SR K + L G E+ G + G++ R + E E+E E + +
Sbjct: 617 SRRPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETK 676
Query: 207 KKKEKKKEKKKEKK---KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ E + E E+K + E + E K+ K + + ++ + + + + E +++ + + +
Sbjct: 677 GENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGE 736
Query: 264 EKKKKKDEG 272
E ++ +DEG
Sbjct: 737 EGEEVEDEG 745
Score = 28.0 bits (62), Expect = 7.0
Identities = 20/103 (19%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 174 KGGKKERRKQ---RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
G + ER + + ++E E E + + E + E E+K E++ + + + K+
Sbjct: 645 TGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEA 704
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKK-KKKKKKEKKKKKDEG 272
K + E ++ + E + + E + E + + ++ E+ + + EG
Sbjct: 705 DHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEG 747
Score = 27.7 bits (61), Expect = 7.8
Identities = 10/31 (32%), Positives = 29/31 (93%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+ EEE++EE+++E+++E+++E++++E++ E+
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 27.7 bits (61), Expect = 9.1
Identities = 10/31 (32%), Positives = 29/31 (93%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
+ +EEE++EE+++E+++E+++E++++E+ +E
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0)
(base unit) of the ATP synthase. The base unit is
thought to translocate protons through membrane (inner
membrane in mitochondria, thylakoid membrane in plants,
cytoplasmic membrane in bacteria). The B subunits are
thought to interact with the stalk of the CF(1)
subunits. This domain should not be confused with the ab
CF(1) proteins (in the head of the ATP synthase) which
are found in pfam00006.
Length = 132
Score = 31.5 bits (72), Expect = 0.20
Identities = 19/89 (21%), Positives = 44/89 (49%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+RK K +E EE K+ + E++ + + E + KK+ ++ K++ +
Sbjct: 30 ERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQKLKEEILAEA 89
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K E+ E + + ++EK++ E R++
Sbjct: 90 QKDAERLLESARAEIEQEKEQALAELRQQ 118
Score = 28.4 bits (64), Expect = 1.9
Identities = 14/75 (18%), Positives = 36/75 (48%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+E KE+ K+ E++ ++ + +++ + + + + KKE +K KEE E
Sbjct: 29 DERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQKLKEEILAE 88
Query: 256 KKKKKKKKEKKKKKD 270
+K ++ + + +
Sbjct: 89 AQKDAERLLESARAE 103
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein
[Function unknown].
Length = 827
Score = 32.8 bits (75), Expect = 0.20
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 205 EEKKKEKKK-EKKKEKKKKEKKKEKKKKKKKKKEKKKKK--KEKKKKKEEKKKEKKKKKK 261
+E KE+ K KK EK E + KK K KK K +KK+ E + KK+
Sbjct: 251 QELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKR 310
Query: 262 KKEKKKK 268
K + KK
Sbjct: 311 PKHRIKK 317
>gnl|CDD|234776 PRK00478, scpA, segregation and condensation protein A/unknown
domain fusion protein; Provisional.
Length = 505
Score = 32.6 bits (74), Expect = 0.21
Identities = 18/77 (23%), Positives = 41/77 (53%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+E + ++++E+ KE K+ ++E+ +K ++ KKK E +++ +K E+K
Sbjct: 426 QEMVQRQQEQEQALKESIKQIQEERAISNFQKREEYLKKKYGEYYLSREQYQKLTPEEKI 485
Query: 255 EKKKKKKKKEKKKKKDE 271
+ ++K + K DE
Sbjct: 486 NIRINQRKIDLIKLDDE 502
Score = 31.1 bits (70), Expect = 0.69
Identities = 16/85 (18%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK--------EKKKK 248
+E +E ++++++E+ ++ K+ ++E+ +K+E+ KKK E+ +K
Sbjct: 419 VNSQESPQEMVQRQQEQEQALKESIKQIQEERAISNFQKREEYLKKKYGEYYLSREQYQK 478
Query: 249 KEEKKKEKKKKKKKKEKKKKKDEGR 273
++K + ++K K D+ +
Sbjct: 479 LTPEEKINIRINQRKIDLIKLDDEQ 503
Score = 27.6 bits (61), Expect = 8.3
Identities = 11/74 (14%), Positives = 39/74 (52%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
++++E+E+ ++ ++ +E++ +K+++ KK+ + +++ +K E+K
Sbjct: 430 QRQQEQEQALKESIKQIQEERAISNFQKREEYLKKKYGEYYLSREQYQKLTPEEKINIRI 489
Query: 252 KKKEKKKKKKKKEK 265
+++ K E+
Sbjct: 490 NQRKIDLIKLDDEQ 503
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 32.6 bits (75), Expect = 0.21
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEE 206
ER K +R + +R +EEEE E E
Sbjct: 261 ERAKAKRAEILAQRAEEEEESSEGAAET 288
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 32.3 bits (74), Expect = 0.22
Identities = 12/73 (16%), Positives = 36/73 (49%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
R+ E + + E+ ++E + K +K+++ +E +++ ++ + KK +
Sbjct: 195 RQLADELNLCDPLELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSEL 254
Query: 250 EEKKKEKKKKKKK 262
E+ E +K +++
Sbjct: 255 LEEIAEAEKIREE 267
Score = 30.8 bits (70), Expect = 0.73
Identities = 15/88 (17%), Positives = 41/88 (46%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ Q ++ ++ +E E +K +++ + K EK+K+ ++ +++ +E
Sbjct: 183 KLQALKEEIASLRQLADELNLCDPLELEKARQELRSLSVKISEKRKQLEELQQELQELTI 242
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ KK E +E + +K +E+ +
Sbjct: 243 AIEALTNKKSELLEEIAEAEKIREECRG 270
Score = 28.8 bits (65), Expect = 3.1
Identities = 17/94 (18%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K + RK+ + K+E + E + + +K ++ + + +K+K+ +E +++
Sbjct: 177 KPKLRKKLQALKEEIASLRQLADELNLCDPLELEKARQELRSLSVKISEKRKQLEELQQE 236
Query: 242 KKEKKKKKEEKKKEKKKKKKK-KEKKKKKDEGRR 274
+E E +K + ++ E +K ++E R
Sbjct: 237 LQELTIAIEALTNKKSELLEEIAEAEKIREECRG 270
>gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV. Bacterial DNA
topoisomerase IV, GyrA, ParC.
Length = 444
Score = 32.5 bits (75), Expect = 0.22
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 20/110 (18%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE-------KKKKEKKKEKKKKKKKKKE 237
R + +RK+ K E ++ + + K+ KE K+K ++ E
Sbjct: 335 RLEVYTRRKEYLLGKLEAERLHILEGLFIALSIIDEIIVLIRSSKDLAKEAKEKLMERFE 394
Query: 238 KKKK-------------KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ K + +K E++ KE +K+ + EK +E
Sbjct: 395 LSEIQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILASEEWLN 444
>gnl|CDD|205286 pfam13105, DUF3959, Protein of unknown function (DUF3959). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 260 amino acids in length.
Length = 242
Score = 32.2 bits (73), Expect = 0.22
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
RK K + +E K+ KKK KK K + K K K K +K K ++ +
Sbjct: 151 HRKEKDDNKENINLFKQ-KKKRKKLSFKIRLPRLPKLKMKLFKFGRKPSNSKDPRKYEHN 209
Query: 249 KEEKKKEKKKKKKKKEKKKKKDEGRRR 275
EE + + K+ +G+ R
Sbjct: 210 YEENVPMYHMTEPIDQYKEPTTQGQTR 236
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 32.1 bits (73), Expect = 0.22
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 193 KKEEEEKEEEKKE------EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K EEK E+ ++ E+ KEK +E + KK + + ++ ++ ++ K+ EK
Sbjct: 2 KPYLEEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKV 61
Query: 247 KKKEEKKKEKKKKKKKKEK 265
EE+ EK+K +K K
Sbjct: 62 DSIEEEISEKEKVMSEKLK 80
Score = 31.7 bits (72), Expect = 0.27
Identities = 18/75 (24%), Positives = 38/75 (50%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E K++ + + KK ++E EE E ++ K+ ++ E++ +K+K +K K
Sbjct: 21 EELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLK 80
Query: 239 KKKKKEKKKKKEEKK 253
+ + ++EEKK
Sbjct: 81 EPAQMSSTSEEEEKK 95
Score = 31.7 bits (72), Expect = 0.29
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E +EK EE + KK E +E ++ ++ ++ +K +++ EK+K EK K
Sbjct: 22 ELKEKIEELPIQAKKSDD-ELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLK 80
Query: 255 EKKKKKKKKEKKKKK 269
E + E+++KK
Sbjct: 81 EPAQMSSTSEEEEKK 95
Score = 31.4 bits (71), Expect = 0.41
Identities = 16/74 (21%), Positives = 39/74 (52%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ K K EE + +K +++ E+ E+ ++ K+ ++ +++ EK+K EK K+
Sbjct: 22 ELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKE 81
Query: 249 KEEKKKEKKKKKKK 262
+ ++++KK
Sbjct: 82 PAQMSSTSEEEEKK 95
Score = 30.6 bits (69), Expect = 0.62
Identities = 16/72 (22%), Positives = 37/72 (51%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K EE + KK + + ++ ++ E+ K+ EK +++ +K+K +K K+ +
Sbjct: 26 KIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPAQM 85
Query: 254 KEKKKKKKKKEK 265
++++KK K
Sbjct: 86 SSTSEEEEKKAK 97
Score = 29.4 bits (66), Expect = 1.4
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 193 KKEEEEKEEEKKEEKKK---EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
KK E++ EK E+ E+ KEK +E + KK + + ++ + ++ K+ +K
Sbjct: 1 KKPYLEEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEK 60
Query: 250 EEKKKEKKKKKKKKEKKKKK 269
+ +E+ +K+K +K K
Sbjct: 61 VDSIEEEISEKEKVMSEKLK 80
Score = 28.3 bits (63), Expect = 4.3
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K E+ +EK EE + KK ++ +E + ++ K+ +K E++ +
Sbjct: 13 EKVTAFALEELKEKIEELPIQAKKSD--DELVEELPERYEQTKENSLIEKVDSIEEEISE 70
Query: 250 EEKKKEKKKK 259
+EK +K K
Sbjct: 71 KEKVMSEKLK 80
Score = 27.9 bits (62), Expect = 4.9
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK--KEKK 239
K ++ K +K EE KE+ ++ + KK + + E+ E+ ++ K+ EK
Sbjct: 2 KPYLEEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKV 61
Query: 240 KKKKEKKKKKEEKKKEKKK 258
+E+ +KE+ EK K
Sbjct: 62 DSIEEEISEKEKVMSEKLK 80
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 32.0 bits (73), Expect = 0.23
Identities = 17/70 (24%), Positives = 43/70 (61%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+E EE+ EE EE ++E +K K++ K++ E+ E+ +K +K+ ++++++ E
Sbjct: 12 LREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEA 71
Query: 253 KKEKKKKKKK 262
+++ + K++
Sbjct: 72 RRKLLEAKEE 81
Score = 30.0 bits (68), Expect = 0.99
Identities = 16/77 (20%), Positives = 44/77 (57%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
++ KK ++ E++ E+ E+ ++E +K K++ K++ +E ++ K +K+ E+++++
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRII 64
Query: 259 KKKKKEKKKKKDEGRRR 275
E ++K E +
Sbjct: 65 SSALLEARRKLLEAKEE 81
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 31.3 bits (71), Expect = 0.23
Identities = 21/84 (25%), Positives = 50/84 (59%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K +++ R K KR+ E E+K EE+++++++E +KEK++ +++ +K+ + +K ++K E
Sbjct: 22 KFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKME 81
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKK 261
+K ++ + + K K
Sbjct: 82 DEKLQETWHEHNLALANFIRTKTK 105
Score = 29.4 bits (66), Expect = 1.1
Identities = 16/70 (22%), Positives = 45/70 (64%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
E ++K+ + E+K E+++K++++E +K+K++ E++++K+ + +K E+K +++K +
Sbjct: 27 ESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQ 86
Query: 260 KKKKEKKKKK 269
+ E
Sbjct: 87 ETWHEHNLAL 96
Score = 27.8 bits (62), Expect = 3.1
Identities = 14/68 (20%), Positives = 44/68 (64%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K +++ + K+K+ + E+K ++++K+E+++ +KEK++ EE+++++ + +K ++K +
Sbjct: 22 KFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKME 81
Query: 268 KKDEGRRR 275
+
Sbjct: 82 DEKLQETW 89
Score = 27.4 bits (61), Expect = 4.0
Identities = 18/84 (21%), Positives = 48/84 (57%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K + + + K++ + E+K EE++K++++E +KEK++ +++ +K+ + +K E+K +
Sbjct: 22 KFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKME 81
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEK 265
++ ++ E + K K
Sbjct: 82 DEKLQETWHEHNLALANFIRTKTK 105
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 32.6 bits (75), Expect = 0.23
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
R+R +++EE E K +E+ E+++E +
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.8 bits (65), Expect = 3.5
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK 219
R+R K+EEE E + +++ ++E++
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIN 339
>gnl|CDD|217970 pfam04220, YihI, Der GTPase activator (YihI). YihI activates the
GTPase activity of Der, a 50S ribosomal subunit
stability factor. The stimulation is specific to Der as
YihI does not stimulate the GTPase activity of Era or
ObgE. The interaction of YihI with Der requires only the
C-terminal 78 amino acids of YihI. A yihI deletion
mutant is viable and shows a shorter lag period, but the
same post-lag growth rate as a wild-type strain. yihI is
expressed during the lag period. Overexpression of yihI
inhibits cell growth and biogenesis of the 50S ribosomal
subunit. YihI is an unusual, highly hydrophilic protein
with an uneven distribution of charged residues,
resulting in an N-terminal region with high pI and a
C-terminal region with low pI.
Length = 169
Score = 31.5 bits (72), Expect = 0.23
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKK---KEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+ +KK E ++E +E K+K+K+K K + ++ E +K+K +KK KK
Sbjct: 10 LAPKGKKKTRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKKDPRIGSKKP 69
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKK 268
+ + K EK+ KKKK KK K
Sbjct: 70 VPLIVEFKVKPEKQAPKKKKVKKPK 94
Score = 28.1 bits (63), Expect = 3.2
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K + + K KKK + + ++ +E+K+KKK K K + E+ + +K+K +KKD
Sbjct: 2 KSGKNGPKLAPKGKKKTRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKKD 61
Score = 27.7 bits (62), Expect = 4.9
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 170 EYGYKGGKKER----RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ KG KK R ++ R RKRK+KRK + ++ E +K+K +KK+ + KK
Sbjct: 9 KLAPKGKKKTRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKKDPRIGSKK 68
Query: 226 K----EKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ K K +K+ KKKK +K K E++ EK
Sbjct: 69 PVPLIVEFKVKPEKQAPKKKKVKKPKLSPEQELEK 103
Score = 27.7 bits (62), Expect = 5.1
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+K K K K K+K + E +E +++K+KKK K K + ++ E +K+K +KK
Sbjct: 1 RKSGKNGPKLAPKGKKKTRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKK 60
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1. All proteins in this family for
which functions are known are cyclins that are
components of TFIIH, a complex that is involved in
nucleotide excision repair and transcription initiation.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, StanfordUniversity) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 305
Score = 32.1 bits (73), Expect = 0.24
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK--------EKKKKKKEKKKKKE 250
++ + + +E + KK E+ + +K KKK E K +K+K
Sbjct: 235 PGNREELPQLIDIMRELRILVKKYEEPRSEKVAALKKKLDECHSIEENLSSVKIRKRKGY 294
Query: 251 EKKKEKKKKKK 261
E KK K
Sbjct: 295 EDDTYISKKAK 305
Score = 27.1 bits (60), Expect = 9.4
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
R R +K EE E+ +KK ++ ++ + +K K + KK K
Sbjct: 249 RELRILVKKYEEPRSEKVAALKKKLDECHSIEENLSSVKIRKRKGYEDDTYISKKAK 305
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 32.3 bits (74), Expect = 0.24
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K+ E+E E+ E + K+K KK ++ K K+ ++ +++ +E + K ++ KK E
Sbjct: 192 KQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251
Query: 253 KKEKKKKKKKKEKKKKKDE 271
E + +KK E+ +
Sbjct: 252 NTEIAEAEKKLEQCRGFTF 270
Score = 29.6 bits (67), Expect = 1.9
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 190 RKRKKE-EEEKEEEKKEEKKKEKKKE----KKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
R RK EEE + K+ E + E + KEK KK +E K KK +E +++ +E
Sbjct: 178 RDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKL-LQEIMIKVKKLEELEEELQE 236
Query: 245 KKKKKEEKKKEKKK 258
+ K E+ +K +
Sbjct: 237 LESKIEDLTNKKSE 250
Score = 28.4 bits (64), Expect = 3.5
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK--KKEEKKKEKKKKKK 261
KE+ KK ++ K KK +E ++E ++ + K ++ KK E + EKK E+ +
Sbjct: 210 KEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT 269
Query: 262 KKEKKKKKDE 271
KE +K K++
Sbjct: 270 FKEIEKLKEQ 279
Score = 28.1 bits (63), Expect = 4.9
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 165 CGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
C K K+ ++ K K+ + EEE +E E K E KK E E + EK
Sbjct: 201 CDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKE 250
K E+ + K+ +K K++ K +
Sbjct: 261 KLEQCRGFTFKEIEKLKEQLKLLQSL 286
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 32.7 bits (75), Expect = 0.24
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K KE + +K+ K+KKE + + + + + KK K+ +K+KEK +
Sbjct: 812 INKAKELARLQKQLDKEKKEVIRIEGKLENEGFVKKAPKEVIEKEKEKLE 861
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 32.4 bits (75), Expect = 0.24
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKK-------KKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ E + EK+ K +K+ ++ EKK K E+ +KE +K + ++K K K++
Sbjct: 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKER 868
Query: 268 KKD 270
Sbjct: 869 LAR 871
Score = 32.0 bits (74), Expect = 0.32
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 204 KEEKKKEKKKEK-KKEKKKKEKK--------KEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E + EK+ K +KE ++ EKK K ++ +K++EK + +EK K +E+
Sbjct: 811 AELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLA 870
Query: 255 EKKK 258
K
Sbjct: 871 RLKA 874
Score = 28.9 bits (66), Expect = 3.5
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 194 KEEEEKEEEKKEEK-KKEKKKEKKK-------EKKKK---EKKKEKKKKKKKKKEKKKKK 242
E E EK+ K +KE ++ +KK K + EK++EK + ++K K K++
Sbjct: 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKER 868
Query: 243 KEKKKK 248
+ K
Sbjct: 869 LARLKA 874
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 32.3 bits (74), Expect = 0.25
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
EEEE+E E+ EE+ +E ++ K+ E+ KE+++ +++ +
Sbjct: 151 EEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQ 192
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 32.2 bits (73), Expect = 0.25
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K+E K+ +E + EK K ++KE + K + K E+ K+ K K +
Sbjct: 22 KKEDKESGLREMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKGESD 81
Query: 264 EK 265
+
Sbjct: 82 KF 83
Score = 31.1 bits (70), Expect = 0.54
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KKE++E + +K K +EK+ E K + K ++ KE K K E
Sbjct: 22 KKEDKESGLREMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKGESD 81
Query: 253 KK 254
K
Sbjct: 82 KF 83
Score = 28.4 bits (63), Expect = 5.1
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKK-KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E KE +E + EK + ++KE + K + K ++ K+ K K + K
Sbjct: 24 EDKESGLREMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKGESDKF 83
Query: 261 KKKEKKKKKDE 271
K +
Sbjct: 84 VGTPLVKDDYD 94
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 32.2 bits (74), Expect = 0.26
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KE + ++K +K EK + +++ +K KK+ K + E++ EK+ ++ K+ K
Sbjct: 241 KEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAK 300
Query: 264 EKK 266
Sbjct: 301 YGN 303
Score = 31.9 bits (73), Expect = 0.38
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KE + ++K EK +K K ++K EK KKK K E +++ +R
Sbjct: 241 KEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKR 290
Score = 31.5 bits (72), Expect = 0.41
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
++ +EK ++ +K+ K ++K EK KKK K + +++ +K+ E K+ K
Sbjct: 245 DELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAK 300
Score = 31.1 bits (71), Expect = 0.61
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+E E ++K +K EK K +++ +K KKK K + +++ +K+ ++ KE K
Sbjct: 241 KEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAK 300
Score = 30.7 bits (70), Expect = 0.86
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
KE + ++K EK ++ + ++K +K KKK K E +++ +K+ +E K+ K
Sbjct: 241 KEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAK 300
Score = 30.3 bits (69), Expect = 1.1
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
KE E +++ +K EK K ++K +K KKK + + +++ +K+ + KE K
Sbjct: 241 KEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAK 300
Score = 29.9 bits (68), Expect = 1.3
Identities = 13/63 (20%), Positives = 32/63 (50%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
++ E +EK E+ +++ K ++K +K KK+ K + +++ EK+ + ++ K
Sbjct: 241 KEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAK 300
Query: 250 EEK 252
Sbjct: 301 YGN 303
Score = 29.9 bits (68), Expect = 1.4
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+E +E +E+ +K +K K E+K ++ KKK K + E++ EK+ + ++ K
Sbjct: 241 KEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAK 300
Score = 29.5 bits (67), Expect = 1.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
Q + ++ K + EEK E+ KKK K E +++ EK+ ++ K+ K
Sbjct: 248 QEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAK 300
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 32.0 bits (73), Expect = 0.26
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
++ ++ E+E +++ K K +E KK KK + E+K K+ K K++KK ++
Sbjct: 92 QQLRELEKESKKQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESATS 151
Query: 250 EEKK 253
E
Sbjct: 152 PESS 155
Score = 32.0 bits (73), Expect = 0.29
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 20/116 (17%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEE----EKKEEKKKEKKKEKKKEKKKKEKKKEKKKK--- 231
+ K++ + K R EE +K + E K KE ++K+ KK +E +
Sbjct: 99 KESKKQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESATSPESSPSS 158
Query: 232 -------------KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K K+ ++ KK K ++K K K KK + R+
Sbjct: 159 TPNSSRPSTPHLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 27.4 bits (61), Expect = 8.2
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K+ ++ KK K +K K K KK K+ +K + ++
Sbjct: 173 AKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRKWDLDGDEDDDAV 226
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 32.4 bits (74), Expect = 0.27
Identities = 11/64 (17%), Positives = 32/64 (50%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E++ K ++ K+ ++ ++ ++K ++ ++ E +++ KK+ KK +K +
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503
Query: 270 DEGR 273
D
Sbjct: 504 DTYL 507
Score = 31.6 bits (72), Expect = 0.47
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
K EE K+ KE ++ ++K ++ E+ E +++ KK+ KK KK
Sbjct: 450 KSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 31.6 bits (72), Expect = 0.49
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ K EE ++ +E +E +++ ++ ++ + +++ KK+ KK KK
Sbjct: 445 EEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKI 500
Score = 30.8 bits (70), Expect = 0.81
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
++E + + K+ KE E E ++K ++ ++ + ++E KKE KK KK
Sbjct: 443 LEEEAILKSLEEFKQSIVKEAALSILE--EIREKVLEQAEQGCENQEEVKKEVPKKVKKI 500
Query: 236 KEK 238
E
Sbjct: 501 PEV 503
Score = 30.1 bits (68), Expect = 1.3
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
EEE + EE K+ KE ++ ++K ++ ++ + +++ KKE KK ++
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 29.3 bits (66), Expect = 2.8
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
E++ K ++ ++ K+ E+ ++K ++ ++ + +++ KKE KK KK
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 28.9 bits (65), Expect = 3.7
Identities = 11/56 (19%), Positives = 30/56 (53%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E+E K ++ ++ K+ E+ +EK ++ ++ + +++ +K+ K+ KK
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 28.5 bits (64), Expect = 4.6
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
EEE + +E K+ KE ++ ++K ++ ++ + ++E KK+ +K K+
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 28.1 bits (63), Expect = 5.5
Identities = 11/60 (18%), Positives = 31/60 (51%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
E++ K ++ ++ ++ ++ ++K ++ ++ + ++E KK+ KK KK E
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503
Score = 28.1 bits (63), Expect = 6.3
Identities = 15/80 (18%), Positives = 36/80 (45%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K + ++ +E ++ ++K ++ ++ E ++E KK+ KK +K +
Sbjct: 450 KSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLL 509
Query: 249 KEEKKKEKKKKKKKKEKKKK 268
+E E+ +K + KK
Sbjct: 510 EELGINEETYEKLEALLAKK 529
Score = 28.1 bits (63), Expect = 6.5
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
EE+ K E+ K+ ++ +E ++K ++ E+ + +E+ KK+ KK +K
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 27.7 bits (62), Expect = 8.7
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
EE+ K E+ K+ KE ++ ++K ++ ++ + +++ +K+ KK KK
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 32.2 bits (74), Expect = 0.27
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKK--------EKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+EE E+ + + K + K ++++KK K +E K +E+ +
Sbjct: 37 KEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELE 96
Query: 248 KKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K E++ KE +++ + E + K+ E
Sbjct: 97 KIEKEIKELEEEISELENEIKELEQEIE 124
Score = 31.8 bits (73), Expect = 0.45
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEK-------KKEKKKEKKKKEKK--------KEKKKK 231
+ K + K E + E + K KE E +++ KK +E+
Sbjct: 154 EDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTP 213
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+ +E K++ +E +K++E +E K+ KK +
Sbjct: 214 SELIREIKEELEEIEKERESLLEELKELAKKYLE 247
Score = 31.4 bits (72), Expect = 0.57
Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKK------KEKKKKEKKKEKKK---KKKKKKEK 238
+ K EE + E + + + K ++ E ++E KK ++ + +E+
Sbjct: 151 TVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEE 210
Query: 239 KKKK---KEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+E K++ EE +KE++ ++ ++ KK
Sbjct: 211 GTPSELIREIKEELEEIEKERESLLEELKELAKKYL 246
Score = 28.7 bits (65), Expect = 3.8
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
KE + + K+ + E +EE E +E K+E ++ +K++E E+ K+ KK
Sbjct: 185 VLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKK 244
Query: 236 KEK 238
+
Sbjct: 245 YLE 247
Score = 28.4 bits (64), Expect = 5.3
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 191 KRKKEEEEKE-----EEKKEEKKKEKKKE--KKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
K +E E+E E+ E +++ E ++ +++ +E +KE++ ++ KE KK
Sbjct: 187 KELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYL 246
Query: 244 EKKKKKEEK 252
E+ E
Sbjct: 247 EELLALYEY 255
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 30.3 bits (69), Expect = 0.27
Identities = 12/40 (30%), Positives = 27/40 (67%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K+ +++ + E EK++ +K+EKK+K +KK +++ K+
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
Score = 27.6 bits (62), Expect = 2.2
Identities = 9/40 (22%), Positives = 27/40 (67%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
K+ + + + + +K+E++K+EKK++ +KK +++ ++
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
Score = 26.8 bits (60), Expect = 4.5
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K K + + E +K+E++K+++++K EKK +++ KE
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
Score = 26.1 bits (58), Expect = 7.4
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
K + + + + +K++ +K+EKK+K +KK E++ K+
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
Score = 26.1 bits (58), Expect = 8.3
Identities = 11/40 (27%), Positives = 26/40 (65%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K + + + E EK++++K++K++K +KK +++ KE
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 32.2 bits (74), Expect = 0.29
Identities = 10/61 (16%), Positives = 28/61 (45%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+++E+ +E K + K + ++ K+ EK+ ++ KKK + + + +
Sbjct: 711 QEQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAE 770
Query: 253 K 253
+
Sbjct: 771 E 771
Score = 29.9 bits (68), Expect = 1.5
Identities = 10/61 (16%), Positives = 26/61 (42%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+++E+ +E K + K + +E K+ +K+ + KKK + + +
Sbjct: 711 QEQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAE 770
Query: 258 K 258
+
Sbjct: 771 E 771
Score = 29.5 bits (67), Expect = 2.1
Identities = 12/61 (19%), Positives = 28/61 (45%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+E+E+ KE K + K ++ ++ K+ +K+ ++ KKK + K +
Sbjct: 711 QEQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAE 770
Query: 257 K 257
+
Sbjct: 771 E 771
Score = 29.2 bits (66), Expect = 3.1
Identities = 11/68 (16%), Positives = 29/68 (42%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E + +++E+ KE K + K + ++ K+ +++ ++ K+K E
Sbjct: 704 EAALEYLQEQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLKKKLAAAELADL 763
Query: 255 EKKKKKKK 262
K ++
Sbjct: 764 LSNAKAEE 771
Score = 28.4 bits (64), Expect = 5.1
Identities = 10/61 (16%), Positives = 28/61 (45%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+++++ KE K + K ++ ++ ++ +K+ E+ KKK + K +
Sbjct: 711 QEQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAE 770
Query: 266 K 266
+
Sbjct: 771 E 771
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 31.6 bits (72), Expect = 0.30
Identities = 15/74 (20%), Positives = 33/74 (44%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K + E KE K +K K + + K + E + E + + + E + ++ ++
Sbjct: 16 DLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI 75
Query: 248 KKEEKKKEKKKKKK 261
K+ E+K K ++
Sbjct: 76 KRAEEKLSAVKDER 89
Score = 30.8 bits (70), Expect = 0.66
Identities = 15/76 (19%), Positives = 38/76 (50%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
E+++ E + KE +K KK K + E + + + + E + + + + + ++ +E+ K
Sbjct: 17 LEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK 76
Query: 259 KKKKKEKKKKKDEGRR 274
+ ++K K + R
Sbjct: 77 RAEEKLSAVKDERELR 92
Score = 30.8 bits (70), Expect = 0.68
Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K +K + + E E E E E + + + E ++ +++ ++ +EK K ++E
Sbjct: 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERE 90
Query: 238 KKKKKKEKKKKKEEKKK--------EKKKKKKKKEKKKKKDE 271
+ E + KE ++ +K +KE + K+
Sbjct: 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER 132
Score = 30.4 bits (69), Expect = 0.86
Identities = 18/104 (17%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
++LE + E ++ R R KR +K K+E + E + K++ +++
Sbjct: 55 EDLENQVSQLESEIQEIRERI-KRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELA 113
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E ++ +K +++ + KE+ ++ E+ E + + +++ + +++
Sbjct: 114 ELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE 157
Score = 30.0 bits (68), Expect = 0.95
Identities = 14/94 (14%), Positives = 46/94 (48%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K+R + R ++ ++ KK + E E K + E + E + + + + + ++ +++ K+
Sbjct: 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR 77
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++K K +++ + + K++ + +
Sbjct: 78 AEEKLSAVKDERELRALNIEIQIAKERINSLEDE 111
Score = 27.3 bits (61), Expect = 7.7
Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEK-KKEKKKEKKKKEKKK---EKKKKKKKKKEKKK 240
R + + K ++ +K + + E K E + E + + + E ++ +++ K ++
Sbjct: 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K ++E + + + K+ +DE
Sbjct: 81 KLSAVKDERELRALNIEIQIAKERINSLEDE 111
Score = 27.3 bits (61), Expect = 8.2
Identities = 18/100 (18%), Positives = 46/100 (46%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
E K ER + + K+ E+E E ++ +K EK+ E K+ ++
Sbjct: 76 KRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+K + + +++ E +++ +E ++++ K+K + +
Sbjct: 136 LEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPE 175
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 30.3 bits (69), Expect = 0.30
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K+++KKKKKK + E +KKEKK+ E++K ++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 29.9 bits (68), Expect = 0.55
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K++KKK+KKK + E EKK+KK+ E++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKA 68
Score = 28.7 bits (65), Expect = 1.3
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 212 KKEKKKEKKKKEKK--KEKKKKKKKKKEKKKKKKE 244
K+EKKK+KKK E + EKK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 28.0 bits (63), Expect = 2.1
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K++K+KKKKK E + E+K+K++ +++K ++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 28.0 bits (63), Expect = 2.4
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K++KK+KKKK E + +KK+KK+ +++K D
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKAD 69
Score = 28.0 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+E+KKK+KK E + +KKEKK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 27.6 bits (62), Expect = 2.9
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 216 KKEKKKKEKKKEKK--KKKKKKKEKKKKKKEKKKK 248
K+EKKKK+KK E + +KK+KKE +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 27.6 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K+++KKK+KK E + +KKEKK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 27.6 bits (62), Expect = 3.4
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
+R K+K+K+K E E E+K++++ E++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 26.8 bits (60), Expect = 5.7
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
+R++K+K+KK E E EKKE+K+ E++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEV---SEQRKADQKA 72
Score = 26.4 bits (59), Expect = 7.2
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
K+++KKK+KK + + EKK+KK+ +++K ++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 26.4 bits (59), Expect = 7.4
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K++KK+KKKK + + ++++KKE +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
>gnl|CDD|153342 cd07658, F-BAR_NOSTRIN, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase
TRaffic INducer (NOSTRIN). F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Nitric Oxide Synthase TRaffic
INducer (NOSTRIN) is expressed in endothelial and
epithelial cells and is involved in the regulation,
trafficking and targeting of endothelial NOS (eNOS).
NOSTRIN facilitates the endocytosis of eNOS by
coordinating the functions of dynamin and the
Wiskott-Aldrich syndrome protein (WASP). Increased
expression of NOSTRIN may be correlated to preeclampsia.
NOSTRIN contains an N-terminal F-BAR domain and a
C-terminal SH3 domain. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
The F-BAR domain of NOSTRIN is necessary and sufficient
for its membrane association and is responsible for its
subcellular localization.
Length = 239
Score = 31.6 bits (72), Expect = 0.30
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K K + E+ + KKK ++ EK + + + K+ K+K K KK + + KE
Sbjct: 113 KAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKE 172
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
++K E K+KK ++ + K ++E
Sbjct: 173 DEKLEAKRKKGEESRLKAENE 193
Score = 27.0 bits (60), Expect = 9.8
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE---KKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ RK + E +K + + + E+ K KKK ++ EK +++ + K+ K+K +
Sbjct: 102 KTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQKMLNK 161
Query: 245 KKKKKEEKKKEKKK---KKKKKEKKKKKDEG 272
KK E + KE +K K+KK E+ + K E
Sbjct: 162 LKKSAEVQDKEDEKLEAKRKKGEESRLKAEN 192
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 32.0 bits (73), Expect = 0.30
Identities = 15/52 (28%), Positives = 20/52 (38%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
E E K + K K K K+ K EK EK + ++ KKK
Sbjct: 237 ENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 31.6 bits (72), Expect = 0.38
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E E K + K K K K+ K +K ++ + K+ +KKK
Sbjct: 237 ENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 31.2 bits (71), Expect = 0.43
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
E E K K K K K K+ K EK +K + K+ +K
Sbjct: 237 ENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRK 286
Score = 31.2 bits (71), Expect = 0.46
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K K K K K+ K +K EK K+ +K +GR
Sbjct: 246 KAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290
Score = 29.7 bits (67), Expect = 1.4
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K K K + K K+ K EK +K + ++ +KKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 29.3 bits (66), Expect = 2.0
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
K K K K K K K +K EK + K+ ++KK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 28.9 bits (65), Expect = 2.9
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K K K K K K+ + +K +K + K+ GR++
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287
Score = 28.2 bits (63), Expect = 5.4
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
E E K + K + K K+ K +K ++ + K+ +K+K
Sbjct: 237 ENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 32.1 bits (73), Expect = 0.30
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Query: 176 GKKERRKQRRRK---RKRKRKKEE---EEKEEEKK--EEKKKEKKKEKKKEKKKKEKKKE 227
GK ER + +K R+ K K+E E KEE +K EE ++E K E+++ K+ + + E
Sbjct: 49 GKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTE 108
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ +K E K++ + KE+ +K K ++E++ +K E +++
Sbjct: 109 RATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKK 156
Score = 31.0 bits (70), Expect = 0.80
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 174 KGGKKERRKQRRR---KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK-----KKEKK 225
K K+E + ++ + K + +K EE E+E K E+++ K+ E + ++ +K++
Sbjct: 60 KTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDEN 119
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K+K + KE+ K K + E++ EK +++KK E
Sbjct: 120 LSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAE 158
>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 32.3 bits (74), Expect = 0.31
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK----KEKKKEKKKKEKKKEKKKK 231
GK + K + K + + + +E K +KK+ E +E+ KK+ ++ ++ +
Sbjct: 445 GKGAKIKIQ--KALKSAENPLQSLKEFKPSNEKKKIDTESTAEMLEEEAKKDDEEVQETQ 502
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K+ E ++ + EE K+ K
Sbjct: 503 LKEATELQEFMINNEDLIEEAKELFGIKS 531
Score = 29.2 bits (66), Expect = 2.8
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK---KKKKKEKKKKKKEKKKKKEEK 252
+ K + +K K E + KE K +KK+ + + ++E KK +E ++ + ++
Sbjct: 446 KGAKIKIQKALKSAENPLQSLKEFKPSNEKKKIDTESTAEMLEEEAKKDDEEVQETQLKE 505
Query: 253 KKEKKKKKKKKEKKKKK 269
E ++ E ++
Sbjct: 506 ATELQEFMINNEDLIEE 522
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense
mechanisms].
Length = 733
Score = 32.0 bits (73), Expect = 0.32
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 183 QR--RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK----- 235
QR R R K++ + +++ + EK ++K K ++ +
Sbjct: 527 QRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLEELPLEIINGDSLLSDE 586
Query: 236 -KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
EK + + + + + + + K D
Sbjct: 587 VDEKINQDILRIQDRILSEAIELARLLDLLHKSSPDV 623
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 31.9 bits (72), Expect = 0.32
Identities = 16/99 (16%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK------KEKKKKEKKKEKKKKK 232
ERR+ R ++ R + + E +EKK K+ +++E++ ++
Sbjct: 108 ERRELAIRMEQQHRSSGCTDTRRSTRYEPLTSAAEEKKKKLLELKKTREREERLYSERHI 167
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ ++ K K+ E+ ++ +++ ++ E + D+
Sbjct: 168 ELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDD 206
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 31.5 bits (72), Expect = 0.32
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 177 KKERRKQRRRKRKRKR--KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE----------- 223
K+ ++ R++R+ K+ K+ + EK +E+ +EKK +K KK +KK+K
Sbjct: 130 AKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKGGGDEGDLFDFL 189
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK-----KKKKKKK 263
K KKK K + K K + K K KK+ K
Sbjct: 190 VDDAAKGGSKKKGRKGGAARGKPNAKRKAKDAKFGFGGKKRGSKS 234
Score = 28.9 bits (65), Expect = 2.9
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK--KKKKKEKKKKKD 270
K +KK + KK ++ +K+++ KK K+ + +K +E+ KEKK +K KK KKK+K
Sbjct: 119 KVRKKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKG 178
Query: 271 EGRR 274
G
Sbjct: 179 GGDE 182
Score = 28.9 bits (65), Expect = 3.1
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 14/112 (12%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KE++ + +K K+K++ E + + + K K+K +K K K+K
Sbjct: 159 AKEKKDMLEKIKKLKKKRKGGGDEGDLFDFLVDDAAKGGSKKKGRKGGAARGKPNAKRKA 218
Query: 237 EKKK-----KKKEKKKKKEE---------KKKEKKKKKKKKEKKKKKDEGRR 274
+ K KK+ K E KK K K K+ + RR
Sbjct: 219 KDAKFGFGGKKRGSKSNTAESSNDLSGFSVKKMKGGGGAGKGGNKRPGKSRR 270
Score = 28.5 bits (64), Expect = 3.9
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK- 240
+ +K + +K+ E K+ K+ + +K +++ K+K+ ++ KK KKK+K E
Sbjct: 127 EAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKGGGDEGDLF 186
Query: 241 -------KKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K KKK + + K K++ K K
Sbjct: 187 DFLVDDAAKGGSKKKGRKGGAARGKPNAKRKAKDAK 222
Score = 28.1 bits (63), Expect = 4.7
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K R++ K+ E+ +++E KK K+ + +K +++ ++KK+ +K KK K+K+K
Sbjct: 119 KVRKKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKG 178
Query: 242 -------------KKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K++ +K + K K+K KD
Sbjct: 179 GGDEGDLFDFLVDDAAKGGSKKKGRKGGAARGKPNAKRKAKDA 221
>gnl|CDD|222791 PHA00431, PHA00431, internal virion protein C.
Length = 746
Score = 32.1 bits (73), Expect = 0.32
Identities = 7/52 (13%), Positives = 25/52 (48%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K+ K ++ +++ E+ EK + ++ + ++E ++++K+
Sbjct: 687 KELLSKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
Score = 31.7 bits (72), Expect = 0.49
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K +E ++K E+ EK + ++ + ++E ++K+K+
Sbjct: 691 SKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQT 736
Score = 30.1 bits (68), Expect = 1.4
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K ++ ++K E+ +EK K K+ + +++ EK+K+
Sbjct: 691 SKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
Score = 29.8 bits (67), Expect = 2.1
Identities = 8/50 (16%), Positives = 26/50 (52%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+E + ++ ++K ++ ++K K K+ + +++ +EK+K+
Sbjct: 687 KELLSKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQT 736
Score = 28.2 bits (63), Expect = 6.2
Identities = 8/52 (15%), Positives = 25/52 (48%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
KE + ++ ++K +E EK + ++ + +E+ ++++K+
Sbjct: 687 KELLSKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
Score = 27.8 bits (62), Expect = 7.1
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
KE K ++ ++K E+ +EK + K + +++ +K+K+
Sbjct: 687 KELLSKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
Score = 27.8 bits (62), Expect = 7.5
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K ++ ++K E+ ++K K K + +++ +K+K+ G
Sbjct: 691 SKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 31.6 bits (72), Expect = 0.33
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
RK K+ +K + KEE K+ K + ++ K++K + ++++
Sbjct: 126 RKGKKPKKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAY 185
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKK 269
+ ++ K K KK+K+K+ K+
Sbjct: 186 RTLRQAKLNAKFVGKKEKKKQAKE 209
Score = 30.8 bits (70), Expect = 0.58
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
RK ++ K+ + KEE K+ K E ++ +++K + K+++
Sbjct: 126 RKGKKPKKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAY 185
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ + K + +K+KKK+ KEKKK
Sbjct: 186 RTLRQAKLNAKFVGKKEKKKQAKEKKK 212
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 32.2 bits (73), Expect = 0.34
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KRK + + + + + KK K KK++K KK + +++
Sbjct: 126 KRKGSELDSDSDSSDSSKGKKLVNKPKKRQKYKKATIQSPTSLTEEENY 174
Score = 28.3 bits (63), Expect = 4.4
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK--EK 245
+ E E K+ K K E + + K KK K KK +K KK +
Sbjct: 105 ALSPGESLPESLSETKQVTVSKRKGSELDSDSDSSDSSKGKKLVNKPKKRQKYKKATIQS 164
Query: 246 KKKKEEKKKE 255
E++
Sbjct: 165 PTSLTEEENY 174
Score = 27.9 bits (62), Expect = 6.7
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K+K + K KK K KK++K KK + +++
Sbjct: 126 KRKGSELDSDSDSSDSSKGKKLVNKPKKRQKYKKATIQSPTSLTEEEN 173
>gnl|CDD|215038 PLN00040, PLN00040, Protein MAK16 homolog; Provisional.
Length = 233
Score = 31.3 bits (71), Expect = 0.37
Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK-------KEKK 229
+K K R + RK + E+ E K +K + +K +KE ++ K
Sbjct: 123 RKLALKTREKIVTTPRKLLKRERRRESKAQKAAQLEKSIEKELLERLKSGTYGDIYNFPS 182
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K K E ++ ++ +++ + K KKK + + + ++
Sbjct: 183 KSYNKVLEMEEVEEAEEELPKSDKNPNSKKKSRVHVEIEYEDEIEY 228
Score = 28.2 bits (63), Expect = 3.9
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 21/111 (18%)
Query: 182 KQRRRK----RKRKRKKEEEEKEEE---KKEEKKKEKKKEKKKEKKKKEKK---KEKKKK 231
KQR K R RK + +E+ ++ K+E+++E K +K + +K KE ++
Sbjct: 109 KQRLTKMTQYLIRMRKLALKTREKIVTTPRKLLKRERRRESKAQKAAQLEKSIEKELLER 168
Query: 232 KKK-----------KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K K + E+ ++ EE+ + K K+K + E
Sbjct: 169 LKSGTYGDIYNFPSKSYNKVLEMEEVEEAEEELPKSDKNPNSKKKSRVHVE 219
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 32.1 bits (74), Expect = 0.37
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 227 EKKKKKKKKKEKKKKKKEKKK 247
EK++ KKKKK KK KK E +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 30.6 bits (70), Expect = 1.00
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKE 250
+K++ KKKK++KK KK + +K E
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
Score = 30.6 bits (70), Expect = 1.1
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEE 251
+K++ KKK+K+KK K+ + +K E
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
Score = 30.2 bits (69), Expect = 1.2
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKE 255
+K++ KKKKK++K KK E +K E
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
Score = 30.2 bits (69), Expect = 1.2
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 223 EKKKEKKKKKKKKKEKKKKKK 243
EK++ KKKKK+KK +K + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 30.2 bits (69), Expect = 1.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKE 237
+K+ KKK+K+K+ KK + +K E
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
Score = 29.8 bits (68), Expect = 1.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 220 KKKEKKKEKKKKKKKKKEKKK 240
+K+ KK+KK+KK KK E +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.8 bits (68), Expect = 1.7
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 237 EKKKKKKEKKKKKEEKKKEKK 257
EK++ KK+KK+KK +K + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.8 bits (68), Expect = 1.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 238 KKKKKKEKKKKKEEKKKEKKK 258
+K++ K+KKK+K+ KK E +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.4 bits (67), Expect = 2.6
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 206 EKKKEKKKEKKKEKKKKEKKK 226
EK++ KKK+K+K+ KK E +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.0 bits (66), Expect = 2.7
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 232 KKKKKEKKKKKKEKKKKKEEK 252
+K++ +KKKK+K+ KK + EK
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.0 bits (66), Expect = 3.1
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 226 KEKKKKKKKKKEKKKKKKEKK 246
++++ KKKKK++K KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.0 bits (66), Expect = 3.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 211 KKKEKKKEKKKKEKKKEKKKK 231
+K+ KK+KK+K+ KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 31.6 bits (72), Expect = 0.38
Identities = 17/42 (40%), Positives = 18/42 (42%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ K KK KK K KK KK KK K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 30.4 bits (69), Expect = 0.81
Identities = 17/44 (38%), Positives = 19/44 (43%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
E+ + KK KK K KK KK KK K KK KK
Sbjct: 253 AERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 30.1 bits (68), Expect = 1.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E++ K K+ KK K KK KK KK K +K KK
Sbjct: 254 ERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 28.9 bits (65), Expect = 2.7
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K+ E+ E E++ + KK +K K KK K+ KK K KK +K
Sbjct: 238 KDPASITLEEALELLAERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 28.1 bits (63), Expect = 5.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ K KK KK K KK KK K+ K K+ KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 27.7 bits (62), Expect = 7.4
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+ K KK KK K +K KK KK + KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 27.4 bits (61), Expect = 7.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+++ + KK KK K KK KK ++ K KK KK
Sbjct: 253 AERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 30.6 bits (69), Expect = 0.38
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
K KKEEE++EE + K++E E + K++ K+
Sbjct: 92 KLTSKKEEEKEEEIPEPTKEEELLGEIRDLLKQQNSSKD 130
Score = 28.6 bits (64), Expect = 1.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
K++ +KEEE E K+EE E + K++ K+
Sbjct: 94 TSKKEEEKEEEIPEPTKEEELLGEIRDLLKQQNSSKD 130
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 32.0 bits (72), Expect = 0.38
Identities = 20/98 (20%), Positives = 39/98 (39%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K + ++ + K++EE EEE K K E+ + + + K
Sbjct: 215 DKPTKEPVKKHSDVKDPKEDEELDEEEHDSAMDKVKLDLFADEEDEPNAEGVGEASDKNL 274
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+K++ E ++ EE +KE K+ K + + R
Sbjct: 275 SSFEKQQIEMDEQIEELEKELVAPKEWKYAGEVSAKKR 312
>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
structure and dynamics].
Length = 395
Score = 31.7 bits (72), Expect = 0.39
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K KK+ EK K++KK K + + + + E++ ++ + K
Sbjct: 59 LGAAISIPKRKKQTEKGKKEKKPKVSDRMDLDNENVQLEMLYSISNEREIRQLRFGGSKV 118
Query: 269 KD 270
++
Sbjct: 119 QN 120
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 31.6 bits (72), Expect = 0.39
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ EE K+EE++EE++K+ KE + ++ ++KE+ + E+ +E
Sbjct: 331 SKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEE 390
Query: 251 EK 252
Sbjct: 391 LG 392
Score = 29.6 bits (67), Expect = 2.0
Identities = 13/67 (19%), Positives = 33/67 (49%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E KE K ++ KK+E+++E++KK K+ + ++ ++K++ + ++
Sbjct: 324 NEFLKEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLGV 383
Query: 265 KKKKKDE 271
+E
Sbjct: 384 LDSLLEE 390
Score = 28.1 bits (63), Expect = 5.8
Identities = 11/69 (15%), Positives = 31/69 (44%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
E +E + ++ KKE+++E+++K+ KE + ++ +K++ + E
Sbjct: 324 NEFLKEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLGV 383
Query: 257 KKKKKKKEK 265
++
Sbjct: 384 LDSLLEELG 392
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found
in organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 31.7 bits (73), Expect = 0.40
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 58 MASVGRGAAESIAECQHQFR 77
M +VGR A + E + QFR
Sbjct: 517 MKAVGRAAGAMVEEVRRQFR 536
>gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ. Members of
this family are the FliJ protein found, in nearly every
case, in the midst of other flagellar biosynthesis genes
in bacgterial genomes. Typically the fliJ gene is found
adjacent to the gene for the flagellum-specific ATPase
FliI. Sequence scoring in the gray zone between trusted
and noise cutoffs include both probable FliJ proteins
and components of bacterial type III secretion systems.
Length = 141
Score = 30.7 bits (70), Expect = 0.42
Identities = 17/59 (28%), Positives = 39/59 (66%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R+ +R ++++++ ++E E K E+ E ++E K +K KEKK+++ + ++ K+E+K
Sbjct: 71 RQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEKKQKEYRAEEAKREQK 129
Score = 30.0 bits (68), Expect = 0.67
Identities = 20/60 (33%), Positives = 41/60 (68%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
R+ +R +++++E +++ E K+E+ E ++E K EK KEKK+K+ + +E K+++KE
Sbjct: 71 RQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEKKQKEYRAEEAKREQKE 130
Score = 27.3 bits (61), Expect = 4.7
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
++E + K ++ + +++ K EK K+KK+K+ + EE K+E+K
Sbjct: 86 LLQQEVEAKRERLLEARRELKALEKLKEKKQKEYRAEEAKREQK 129
Score = 26.9 bits (60), Expect = 6.7
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK-EKKKEKKKKEKKKEKKK 230
+ +R +Q++++ +++ E ++E + E ++E K EK KEKK+KE + E+ K
Sbjct: 68 RFIRQLDQRIQQQQQELALLQQEVEAKRE--RLLEARRELKALEKLKEKKQKEYRAEEAK 125
Query: 231 KKKK 234
+++K
Sbjct: 126 REQK 129
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 31.9 bits (73), Expect = 0.42
Identities = 11/15 (73%), Positives = 15/15 (100%)
Query: 180 RRKQRRRKRKRKRKK 194
RR++RRR+R+RKRKK
Sbjct: 46 RRRRRRRRRRRKRKK 60
Score = 27.6 bits (62), Expect = 8.0
Identities = 9/15 (60%), Positives = 15/15 (100%)
Query: 180 RRKQRRRKRKRKRKK 194
RR++RRR+R+R+RK+
Sbjct: 44 RRRRRRRRRRRRRKR 58
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 31.5 bits (72), Expect = 0.42
Identities = 17/48 (35%), Positives = 34/48 (70%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
EK EEK EE+++E+ E ++E+++++++++K+K K K + KEK
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEK 61
Score = 30.7 bits (70), Expect = 0.85
Identities = 16/56 (28%), Positives = 37/56 (66%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ K + +K EE+ EEE++EE + +++E+++++++K++K K K + K+K
Sbjct: 6 KEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEK 61
Score = 30.3 bits (69), Expect = 0.90
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
KE+ + K + K ++EEEE+ E +EE+++E ++EKK++ +K K + K+K
Sbjct: 3 DKLKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEK 61
Score = 29.9 bits (68), Expect = 1.2
Identities = 15/58 (25%), Positives = 38/58 (65%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K KEK K +K ++K +++++E+ + +E++++++E++K++K K K + E
Sbjct: 3 DKLKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKE 60
Score = 29.9 bits (68), Expect = 1.3
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
EK EEK +E+++E+ E +++E+++++++KK+K K K + K+K+
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKD 62
Score = 29.6 bits (67), Expect = 1.9
Identities = 15/57 (26%), Positives = 37/57 (64%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+K K EK +EK +++++++ + +++E+++ +EEKK++ K K + K+ +
Sbjct: 6 KEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKD 62
Score = 29.2 bits (66), Expect = 2.7
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
EEK EE++EE+ E ++E+++E ++++K+K K K E K+K E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIED 65
Score = 28.8 bits (65), Expect = 2.7
Identities = 14/59 (23%), Positives = 39/59 (66%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+K KEK + +K ++K +++++++ E +++++E+ ++++++K K K E K+K
Sbjct: 3 DKLKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEK 61
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 30.7 bits (70), Expect = 0.43
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
K + K + KKEK+K +K +++ E +K ++ K K
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 30.7 bits (70), Expect = 0.47
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
K + K + KKEK+K EK +++ + +K + K K E
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFE 69
Score = 28.8 bits (65), Expect = 2.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K + KKEK+K +K +K+ E +K ++ K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.8 bits (65), Expect = 2.3
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
K + K + ++E+++ EK ++ E +K ++ K K E
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFE 69
Score = 28.4 bits (64), Expect = 2.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
K + KK+K+K +K +K+ + +K +E K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.4 bits (64), Expect = 2.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
+ K + KKEK+K +K K+ E +K ++ K K
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.4 bits (64), Expect = 2.8
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K ++ K + KK+++K EK +++ + +K ++ K K
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.4 bits (64), Expect = 3.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K + KKEK+K ++ +K+ + +K +E K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.0 bits (63), Expect = 3.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K + K + KKEK+K +K +K+ + +K ++ K K
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.0 bits (63), Expect = 4.1
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+ K + + + +K+KEK ++ +K + EK + K K
Sbjct: 25 KNLKAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 27.7 bits (62), Expect = 5.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K + K + KK+++K +K K+ + EK + K K
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 27.7 bits (62), Expect = 5.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K + K + KKEK+K +K +K + +K ++ K +
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 27.3 bits (61), Expect = 6.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K + K + KK+K+K ++ +K+ E +K E K +
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 26.9 bits (60), Expect = 8.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K + +K+KEK +K +K+ + +K + K K E
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFE 69
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 30.2 bits (68), Expect = 0.44
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKE 218
EEK EEK+EEKKKE++KE+++E
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 28.2 bits (63), Expect = 2.1
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKE 223
EEK EEK++EKKKE++KE++++E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 27.5 bits (61), Expect = 3.1
Identities = 12/22 (54%), Positives = 21/22 (95%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKE 214
+K EE++EE+KKEE+K+E+++E
Sbjct: 76 EKAEEKEEEKKKEEEKEEEEEE 97
Score = 26.7 bits (59), Expect = 6.2
Identities = 11/25 (44%), Positives = 22/25 (88%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKE 218
EE+ EE+++E+KK+E+K+E+++E
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 26.7 bits (59), Expect = 6.9
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKE 227
EEK +EK++EKKKE++K+E+++E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 26.3 bits (58), Expect = 7.5
Identities = 12/22 (54%), Positives = 21/22 (95%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKE 214
+++ EEKEEEKK+E++KE+++E
Sbjct: 75 EEKAEEKEEEKKKEEEKEEEEE 96
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 31.4 bits (72), Expect = 0.45
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 189 KRK-RKKEEEEKEEE----KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
KRK R ++ K EE +KE+ E + ++ + +E KEKKKKKKKKK+K++ ++
Sbjct: 45 KRKIRDYLQDAKGEEIFVQEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELRE 104
Query: 244 E 244
Sbjct: 105 W 105
Score = 31.0 bits (71), Expect = 0.58
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+EK+K + + E+ + ++ ++KKKKK+KKKKKEE ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 30.3 bits (69), Expect = 0.84
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+EK+K + + ++ + E+ K+K+KKKKK++KK+E ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 30.3 bits (69), Expect = 0.93
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+EK+K + + E+ ++ K+KK+KKKKKK+K++ +E
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 30.3 bits (69), Expect = 1.1
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+EK+K + E ++ ++ +EKKK+KKKKKKK+E ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 29.5 bits (67), Expect = 1.5
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++K+K E + + + +E K++KKKKKKKK+K++ ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 28.7 bits (65), Expect = 2.8
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+EK+K + + + + ++ K+KK++KKK+KKK++ ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 27.2 bits (61), Expect = 9.8
Identities = 13/42 (30%), Positives = 29/42 (69%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K+K + + ++ ++ ++ ++KK+KKKKKKKKE+ ++
Sbjct: 64 EKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
>gnl|CDD|222382 pfam13791, Sigma_reg_C, Sigma factor regulator C-terminal. This
family is the C-terminal domain of a sigma factor
regulator, this may represent a sensory domain.
Length = 154
Score = 30.7 bits (70), Expect = 0.45
Identities = 23/114 (20%), Positives = 31/114 (27%), Gaps = 14/114 (12%)
Query: 153 PKDLKREWLWGGCGDNLEY-GYKGGKKERR----KQRRRKRKRKRKKEEEEKEEEKKEEK 207
PK++ W D + E K+EE EE
Sbjct: 31 PKNVNPVWYAVDTEDEDKKDNDANLIWEPEVYGFPGLDDNGLEAEDKDEESYEEHFISAL 90
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK---------KKEKKKKKEEK 252
K E K + KK+ K+ K KKE K +EE
Sbjct: 91 KYLSDHEDIASMISGRKDLDLKKRIDYVKKNGLKIYGVVVTGPKKELLKLQEEP 144
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 29.9 bits (68), Expect = 0.45
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKE 218
EEKKEE+++E++KE+ +E
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEE 95
Score = 29.9 bits (68), Expect = 0.51
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 194 KEEEEKEEEKKEEKKKEKKKE 214
EEK+EE++EE++KE+ +E
Sbjct: 75 AAAEEKKEEEEEEEEKEESEE 95
Score = 28.4 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKE 214
EE+KEEE++EE+K+E ++E
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
Score = 26.8 bits (60), Expect = 5.2
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKE 218
E+K+E+++E++++++ E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESE 94
Score = 26.8 bits (60), Expect = 5.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKE 218
EE+K+EE+++E+K+E ++E
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEE 96
Score = 26.8 bits (60), Expect = 5.5
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKE 223
EEKK+E+++E++KE+ ++E
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEE 96
>gnl|CDD|148511 pfam06936, Selenoprotein_S, Selenoprotein S (SelS). This family
consists of several mammalian selenoprotein S (SelS)
sequences. SelS is a plasma membrane protein and is
present in a variety of tissues and cell types. The
function of this family is unknown.
Length = 190
Score = 31.0 bits (70), Expect = 0.46
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
Q+ R R R +K EKE + K +++E + + + ++ K K K+++K+ +
Sbjct: 52 QKLRPRWRSLQKRSSEKEITVFDPDKVVRRQEALEAARLRMQEDLDAKAAKFKEKQKQLE 111
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+EK+++K E ++ K K K E
Sbjct: 112 EEKRRQKIEMWDRMQEGKSYKVSAKLAQE 140
Score = 29.1 bits (65), Expect = 2.1
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K R+Q + R R +E+ + + K +EK+K+ ++EK+++K + + ++ K K +
Sbjct: 77 KVVRRQEALEAARLRMQEDLDAKAAKFKEKQKQLEEEKRRQKIEMWDRMQEGKSYKVSAK 136
Query: 238 KKKKKKEKKKKKEEKKKEKKKKK 260
++ E+ K K +KK
Sbjct: 137 LAQEATEETSSSSVLPKPKTEKK 159
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family.
It is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are
multi-domain proteins that act as scaffolding proteins
and transducers of a variety of signaling pathways that
link membrane dynamics and the underlying actin
cytoskeleton. Most members contain an N-terminal IMD, an
SH3 domain, and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus, exccept for MIM which does not
carry an SH3 domain. Some members contain additional
domains and motifs. The IMD domain binds and bundles
actin filaments, binds membranes and produces membrane
protrusions, and interacts with the small GTPase Rac.
Length = 223
Score = 31.2 bits (71), Expect = 0.46
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++K + ++K K +K KKE K+K+++ K + E KK +KK +K K ++
Sbjct: 100 EKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKL 154
Score = 30.0 bits (68), Expect = 1.1
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KK E +++ K EK +K+ ++K+E K + + KK +KK +K K +EK + E+
Sbjct: 101 KKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEE 160
Query: 253 KKEKKKKKKKKEKKKKKD---EGRRR 275
+K+K+ + + +D E RRR
Sbjct: 161 LNDKQKELEAFVSQGLRDALLEERRR 186
Score = 28.5 bits (64), Expect = 2.8
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+KK + +K K +K KKE K+K+E+ K + + KK ++K +K G+
Sbjct: 100 EKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKY 150
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 31.3 bits (71), Expect = 0.46
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 173 YKGGKKERRKQRRRKRKRKR--KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
KK +K K KRK EEEE +EK +K+ K+ + ++ ++++K E
Sbjct: 120 MGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDE 176
Score = 29.0 bits (65), Expect = 2.5
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 183 QRRRKRKRKRKKEEEEKEEE--KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK--KKEK 238
+R + +K++K +E E KE KK +K K K+K E+
Sbjct: 86 ERYSDKYQKKRKIGPSIKEHPFDLELFPKELYSVMGINKKAGKKLALSKFKRKVGLFTEE 145
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ EK E+K KE + + +E +K ++E
Sbjct: 146 EEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEE 178
Score = 27.4 bits (61), Expect = 7.4
Identities = 18/100 (18%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 179 ERRKQRRRKRKRKRKKEEEE-------KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
ER + +K+++ +E +E +K +K K K K ++
Sbjct: 86 ERYSDKYQKKRKIGPSIKEHPFDLELFPKELYSVMGINKKAGKKLALSKFKRKVGLFTEE 145
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ EK ++K K+ E + +++ +K ++E++++++E
Sbjct: 146 EEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 31.5 bits (72), Expect = 0.46
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
E EE +E E+ KK + + K K+ K KK K ++ + E E
Sbjct: 320 TAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAE 379
Query: 251 EKKKEKKKKKKKKEKK----KKKDE 271
E K + + K + K K+K
Sbjct: 380 ELAKLQDELDKIVKTKSELVKEKYH 404
Score = 27.3 bits (61), Expect = 9.8
Identities = 15/67 (22%), Positives = 27/67 (40%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K+ E + K K+ K KK + +E + E ++ + + + + K K
Sbjct: 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395
Query: 250 EEKKKEK 256
E KEK
Sbjct: 396 SELVKEK 402
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 31.0 bits (70), Expect = 0.46
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
K E+E+EKK+ KE+K+ KKKE+ K+E
Sbjct: 90 KNHLEEEKEKKKNLNKEEKEAKKKERAKRE 119
Score = 28.7 bits (64), Expect = 2.7
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKE 227
E+++EKKK KE+K+ KKK+ K+E
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
Score = 27.6 bits (61), Expect = 7.3
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKK 235
E++KEKKK K+EK+ +KK++ K++
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
Score = 27.2 bits (60), Expect = 8.5
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKK 231
E++KEKKK KE+K+ +KK+ K++
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 31.9 bits (73), Expect = 0.47
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EE+E EK EE E+ ++ +E + EKK K E K +K K +K +
Sbjct: 170 ISEEQEFEKFEEAINEEVEKAAQEALEAEKKL--------KAESPKVEKPKPLFDGQKGR 221
Query: 255 EKKKKKKKKEKKKKKDEGRR 274
+ K ++ K K +E R
Sbjct: 222 KIKSTEEIKPLIKINEEETR 241
Score = 29.6 bits (67), Expect = 2.2
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E E++E +K E+ ++ EK +E + +KK K + + +K K +K K K
Sbjct: 166 EVNDISEEQEFEKFEEAINEEVEKAAQEALEAEKKLKAESPKVEKPKPLFDGQKGRKIKS 225
Query: 256 KKKKKK 261
++ K
Sbjct: 226 TEEIKP 231
>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein
(TBPIP). This family consists of several eukaryotic
TBP-1 interacting protein (TBPIP) sequences. TBP-1 has
been demonstrated to interact with the human
immunodeficiency virus type 1 (HIV-1) viral protein Tat,
then modulate the essential replication process of HIV.
In addition, TBP-1 has been shown to be a component of
the 26S proteasome, a basic multiprotein complex that
degrades ubiquitinated proteins in an ATP-dependent
fashion. Human TBPIP interacts with human TBP-1 then
modulates the inhibitory action of human TBP-1 on
HIV-Tat-mediated transactivation.
Length = 169
Score = 30.7 bits (70), Expect = 0.47
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+++ +E K+E ++ E+K E +E K +E +K KK+ K KE KK+KK
Sbjct: 115 QEEIQELKKEVREIEEKLESLEEGWKPVTPEEMEKVKKEYKDLHKEWKKRKK 166
>gnl|CDD|221893 pfam13010, pRN1_helical, Primase helical domain. This alpha
helical domain is found in a set of bacterial plasmid
replication proteins. The domain is found to the
C-terminus of the primase/polymerase domain. Mutants of
this domain are defective in template binding,
dinucleotide formation and conformation change prior to
DNA extension.
Length = 135
Score = 30.6 bits (69), Expect = 0.47
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E +KEEE EE ++ K+E K + K K E +++ KK KK ++ K+KKK
Sbjct: 1 EGKKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKKAILNTA 60
Query: 256 KK 257
K
Sbjct: 61 KG 62
Score = 30.2 bits (68), Expect = 0.50
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E KK+E+ E+ EK K+E K + K K + +++ +K KK E+ KEKKK
Sbjct: 1 EGKKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKKAILNTA 60
Query: 265 KK 266
K
Sbjct: 61 KG 62
Score = 30.2 bits (68), Expect = 0.54
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K+EEE EE E+ K+E K + + K E +E+ KK KK ++ K+K+K K
Sbjct: 3 KKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKKAILNTAKG 62
Score = 29.8 bits (67), Expect = 0.76
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
K++ + EE+ E+ K+E K ++ K K E ++E K+ KK ++ KEKKK
Sbjct: 3 KKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKK 54
Score = 29.4 bits (66), Expect = 0.94
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KKEEE+ EE+ ++ K++ K ++ K K + ++E KK KK E+ K+KK+ +
Sbjct: 3 KKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKKAILNTAKG 62
Score = 28.2 bits (63), Expect = 2.7
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KKE++ ++ +K K+E K + K K E ++E KK KK ++ K+
Sbjct: 3 KKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEK 52
Score = 27.5 bits (61), Expect = 4.0
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
E KKE++ E+ EK K++ K ++ K K + ++E KK KK ++ KEKKK
Sbjct: 1 EGKKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKK 54
Score = 26.7 bits (59), Expect = 7.8
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E KKEE+ E+ EK KE+ K + + K + ++E KK K+ ++ +EKKK
Sbjct: 1 EGKKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKKAILNTA 60
Query: 261 KK 262
K
Sbjct: 61 KG 62
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 29.9 bits (68), Expect = 0.48
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 13/87 (14%)
Query: 196 EEEKEEEKKEEKKKEKKKE--------KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK- 246
++ +EEEK+E K+ + + + K K +++ + K K+K++KKKKKKE +
Sbjct: 31 DKREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELED 90
Query: 247 ----KKKEEKKKEKKKKKKKKEKKKKK 269
+ +E+KK+E + +KK E+ KK+
Sbjct: 91 FYRFQIREKKKEELAELRKKFEEDKKR 117
Score = 29.9 bits (68), Expect = 0.49
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 18/86 (20%)
Query: 187 KRKRKRKKEEEEKEEEKKEE-----KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK-- 239
KR+ + K+E +E E E+ + +K + +E+ + K KEK+KKKKKKKE +
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDF 91
Query: 240 -------KKKKE----KKKKKEEKKK 254
KKK+E +KK +E+KK+
Sbjct: 92 YRFQIREKKKEELAELRKKFEEDKKR 117
Score = 29.5 bits (67), Expect = 0.75
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 13/85 (15%)
Query: 183 QRRRKRKRKRKKEEEEKEEE------KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK-- 234
+R + K + K+ E +E+ + K K ++E + K K+++KK+KKKK+ +
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDF 91
Query: 235 ----KKEKKKKK-KEKKKKKEEKKK 254
+EKKK++ E +KK EE KK
Sbjct: 92 YRFQIREKKKEELAELRKKFEEDKK 116
Score = 28.0 bits (63), Expect = 2.8
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK-------KEKKKEKKKKEKKKEKKKKKK 233
R R+ K R+ E + KE+EKK++KKKE + +EKKKE+ + +KK ++ KK+
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
>gnl|CDD|222426 pfam13870, DUF4201, Domain of unknown function (DUF4201). This is
a family of coiled-coil proteins from eukaryotes. The
function is not known.
Length = 177
Score = 30.6 bits (70), Expect = 0.49
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKK-------KEKKKEKKKKKKKKKEKKKKKKEKK 246
+ E + EK EE+ KE K+ K K KEK +++ ++ K++ K+K+E+
Sbjct: 48 QIENQALNEKIEERNKELKRLKLKYTNTVHILTHLKEKLHMLEEELERLKKELKEKEERL 107
Query: 247 KKKEEK----KKEKKKKKKKKEKKKKK 269
K ++ K E+ K +K+ +K +++
Sbjct: 108 AKLRKELYKVKLERDKLRKQNKKLRQQ 134
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 31.2 bits (71), Expect = 0.52
Identities = 16/70 (22%), Positives = 25/70 (35%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
EK +E K KKK+ K E K K + ++ +K + K +K
Sbjct: 132 EKFDEIKGAKKKDFFKSINIYEIDNFIDKTLSKILDDNIVFQDNLEKNIDDKLSNIFNEK 191
Query: 262 KKEKKKKKDE 271
K +K
Sbjct: 192 LSNLKNEKIS 201
Score = 31.2 bits (71), Expect = 0.53
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK-KKKKKKEKKKKKKEKKKKKEEKK 253
E K+ K EK E K KKK+ K E K + + E+
Sbjct: 121 EYILKKILDKIEKFDEIKGAKKKDFFKSINIYEIDNFIDKTLSKILDDNIVFQDNLEKNI 180
Query: 254 KEKKKKKKKKEKKKKKDEG 272
+K ++ K+E
Sbjct: 181 DDKLSNIFNEKLSNLKNEK 199
Score = 30.1 bits (68), Expect = 1.3
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 9/113 (7%)
Query: 165 CGDNLEYGYK------GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
NLEY K E + K+K K + + ++ + +
Sbjct: 116 FSKNLEYILKKILDKIEKFDEIKGA---KKKDFFKSINIYEIDNFIDKTLSKILDDNIVF 172
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ EK + K ++ K EK E+ K + + +KK D
Sbjct: 173 QDNLEKNIDDKLSNIFNEKLSNLKNEKISINEKIKSILNEINPDSKFEKKLDL 225
Score = 28.1 bits (63), Expect = 5.6
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKK----KEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
K K ++ + EK + K +K K EK +K K E
Sbjct: 156 NFIDKTLSKILDDNIVFQDNLEKNIDDKLSNIFNEKLSNLKNEKISINEKIKSILNEINP 215
Query: 241 -KKKEKKKKKEEKKKEKKKKKKKKEK 265
K EKK K E K +
Sbjct: 216 DSKFEKKLDLNLIKLEIVKSNSDNDS 241
>gnl|CDD|219999 pfam08743, Nse4, Nse4. Nse4 is a component of the Smc5/6 DNA
repair complex. It forms interactions with Smc5 and
Nse1.
Length = 305
Score = 31.2 bits (71), Expect = 0.54
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K R++++RR R+RK+ +E E ++ E KK++ E K E+ + +K + +
Sbjct: 153 PKVRKQRQRRARERKKPGQEVRPTELRELEAKKQEDTELTTMCKNIERILGRLQKYSQDE 212
Query: 237 E 237
Sbjct: 213 G 213
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 31.4 bits (72), Expect = 0.54
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 211 KKKEKKKEKKKKEKKKEK-------------KKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+K K++E KKK K EK +K++ +E K KK ++EE ++E++
Sbjct: 460 SRKRKEEEAKKKAKTFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLEEEEVEEEEE 519
Query: 258 KKKKKKEKKKKKDEG 272
++ E K E
Sbjct: 520 EEAVVVESAKNYTEK 534
Score = 30.6 bits (70), Expect = 1.0
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 176 GKKERRKQRRRKRKRKRK--KEEEEKEEE--KKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+K + ++ ++K K K E K E +KEE E+ K KK +E++ E++++
Sbjct: 460 SRKRKEEEAKKKAKTFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLEEEEVEEEEE 519
Query: 232 KKKKKEKKKKKKEKKK 247
++ + K +K
Sbjct: 520 EEAVVVESAKNYTEKD 535
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 30.0 bits (68), Expect = 0.54
Identities = 16/52 (30%), Positives = 42/52 (80%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+K+++++K +++ K+KE++++ +E+K+ +EE+K+E +K+ K++++ K E
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLE 80
Score = 28.8 bits (65), Expect = 1.6
Identities = 17/52 (32%), Positives = 39/52 (75%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KRK++R+K+ +E+ +EK+ E++ E++K ++E+K++ +K+ K++K+ K
Sbjct: 28 HKRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLL 79
Score = 28.4 bits (64), Expect = 2.3
Identities = 20/64 (31%), Positives = 44/64 (68%), Gaps = 4/64 (6%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEK----KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KK+K KK+ +E K+ +KE K+K++++KK +E+ KEK+++++ +E+K+ ++E
Sbjct: 1 KKKKAKKKGVEEVVFDKEARKEYLTGFHKRKQQRRKKAQEEAKEKEREERIEERKRIREE 60
Query: 272 GRRR 275
++
Sbjct: 61 RKQE 64
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 30.5 bits (69), Expect = 0.55
Identities = 18/82 (21%), Positives = 34/82 (41%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ + +K + ++ +K+ +K K E + K +KKK E K ++E++
Sbjct: 54 QSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGI 113
Query: 249 KEEKKKEKKKKKKKKEKKKKKD 270
K+ E K K K K
Sbjct: 114 LRSKQAEDGKLVKIYSKMKPDA 135
Score = 27.1 bits (60), Expect = 8.7
Identities = 17/79 (21%), Positives = 35/79 (44%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
KK + E EK + ++ +K+ +K K + ++ K +KK+ + K E
Sbjct: 48 EKKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLE 107
Query: 252 KKKEKKKKKKKKEKKKKKD 270
+++E + K+ E K
Sbjct: 108 EEREGILRSKQAEDGKLVK 126
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 31.2 bits (71), Expect = 0.59
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ ++ + + ++K K++K++ +++ +E KK+ + +KK K E +K K++ K
Sbjct: 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDK 223
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKK---KKKEKKKKKD 270
KKE K K++ K K + + +KK+ K + +K + D
Sbjct: 224 LKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQND 263
Score = 29.3 bits (66), Expect = 2.2
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
K EE EK + ++K K++KK+ ++ +E KK + KKK + + ++
Sbjct: 157 GEDLKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQK 216
Query: 245 KKKKKEEKKKEKKKKKKKKEKKK 267
K++ ++ KKE K K+K + K
Sbjct: 217 IKEEFDKLKKEGKADKQKIKSAK 239
Score = 27.8 bits (62), Expect = 7.2
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKE-KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ + KE+K E KK + + + K E K + +E +K K ++
Sbjct: 119 PETKDETPASAPSSIKEQKSSELKKVDSQLPDPRALLKGEDLKTVETAEEIEKSLKAMQQ 178
Query: 248 KKEEKKKEKKKKKKKKEKKKK 268
K +++KK+ K+ +E KK+
Sbjct: 179 KWKKRKKDLPNKQDLEEYKKR 199
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 31.2 bits (70), Expect = 0.59
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
E EK+ K KK +K + K K + KK K K E K +K++ E K+E++
Sbjct: 114 EREKELAAIKAKKSKKPLPVEPKAKVETKKVAKPSKVEVKPVEKDENVDPELLKREQQVL 173
Query: 260 KKKKEKKKKKDE 271
K ++ +K+E
Sbjct: 174 KVVEKTASQKEE 185
Score = 28.1 bits (62), Expect = 5.3
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
++E+E + K+ KK + K K + KK K K + K +K++ + K++++
Sbjct: 114 EREKELAAIKAKKSKKPLPVEPKAKVETKKVAKPSKVEVKPVEKDENVDPELLKREQQVL 173
Query: 253 KKEKKKKKKKKEK 265
K +K +K+E+
Sbjct: 174 KVVEKTASQKEEE 186
Score = 27.3 bits (60), Expect = 8.0
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
ER K+ + +K KK E + K E KK K K + K ++ + + K++++
Sbjct: 114 EREKELAAIKAKKSKKPLP-VEPKAKVETKKVAKPSKVEVKPVEKDENVDPELLKREQQV 172
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKE 264
K ++ +KEE+ E +
Sbjct: 173 LKVVEKTASQKEEETTETIMISTSPK 198
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 30.9 bits (70), Expect = 0.59
Identities = 17/90 (18%), Positives = 51/90 (56%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
RR Q+ + + E EEK ++++EE + +KK + E++ + ++E +++++ +
Sbjct: 22 RRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLE 81
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ E + + ++E++KK+ + + +++
Sbjct: 82 AEVDEATAEVAKLEEEREKKEAETRQLQQE 111
Score = 28.6 bits (64), Expect = 3.1
Identities = 20/87 (22%), Positives = 51/87 (58%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ +R +K +E EE E +E+ K+E+++ + EKK E ++E ++ +++ +++
Sbjct: 17 MEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEE 76
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ + + +E E K ++++EKK+
Sbjct: 77 RERLEAEVDEATAEVAKLEEEREKKEA 103
Score = 28.6 bits (64), Expect = 3.6
Identities = 17/92 (18%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK-EKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ K K+++EE + E+K +E ++E ++ E++ ++E+++ + + + E
Sbjct: 33 ETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEATAEVA 92
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K ++E++KK+ E ++ +++ ++ +E ++ +
Sbjct: 93 KLEEEREKKEAETRQLQQELREAQEAHERARQ 124
>gnl|CDD|220496 pfam09972, DUF2207, Predicted membrane protein (DUF2207). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 503
Score = 31.2 bits (71), Expect = 0.60
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+EE+ K+++ + K EK +KK K+ KKK++K K K
Sbjct: 309 EEEDSKKDDYTLRLLDKDSKLPPYEKDLLNFLFKKKGDDNLFSLKEIKKKKQKSKSFAKA 368
Query: 254 KEKKKKKKKKEKKKKKD 270
+K +K KKE +K
Sbjct: 369 FKKWQKSVKKEADRKGL 385
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 31.1 bits (71), Expect = 0.60
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K+++EK+KEKK KK+ K+E++ + K ++ E
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
Score = 29.2 bits (66), Expect = 2.3
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
KE+++K+K+KK KK+ K+E++ + K E+
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
Score = 29.2 bits (66), Expect = 2.8
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+++EK+K+KK KKE K++++ + K ++ E
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
Score = 28.8 bits (65), Expect = 3.6
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K+++EK+K+KK KK+ KEE++ + K
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNK 417
Score = 28.8 bits (65), Expect = 3.7
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKE 218
+++EE+EKE++ K+E K+E++ + +
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNK 417
Score = 28.4 bits (64), Expect = 5.1
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
KE EEKE+EK + KKE K+E++ + K ++
Sbjct: 391 KEREEKEKEK--KAKKEGKEERRIHFQNKSIEE 421
Score = 28.1 bits (63), Expect = 5.7
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
KE+++K+KEKK KKE K++ + + K ++
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
Score = 27.3 bits (61), Expect = 9.0
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 247 KKKEEKKKEKKKKKKKKEKKKK 268
K++EEK+KEKK KK+ KE+++
Sbjct: 391 KEREEKEKEKKAKKEGKEERRI 412
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 31.1 bits (70), Expect = 0.62
Identities = 15/36 (41%), Positives = 27/36 (75%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+K ++++E K K KKE++K+K+ +KE + K +EKK
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKK 92
Score = 30.7 bits (69), Expect = 1.0
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
RK +++ E K + K+E++K K+ EK+ E K +EKK K
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPK 97
Score = 29.2 bits (65), Expect = 2.5
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 199 KEEEKKEEKKKEKKKEKKKEK---KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K ++++E K K KKE++K K K+ E K E+KK K + E + E
Sbjct: 58 KGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVAN 117
Query: 256 KKKKKKKKEKKKKKDEGRR 274
++++KK K K++G +
Sbjct: 118 LSEEERKKYAAKLKEKGNK 136
Score = 28.8 bits (64), Expect = 4.0
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 171 YGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKK-EEKKKEKKKEKKKEKKKKEKKKEKK 229
Y + G+++R + + +K +RK+++ EKE E K EEKK K E + + ++
Sbjct: 54 YYQRKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDES 113
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+E++KK K K+K K K K
Sbjct: 114 SVANLSEEERKKYAAKLKEKGNKAYRNKDFNK 145
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 31.2 bits (71), Expect = 0.63
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E ++E+ K+ K+ KK E K ++ K+ K++ E K K
Sbjct: 521 EMAREEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILKL 574
Score = 29.7 bits (67), Expect = 1.7
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
E +E++ K K++ KK E K K+ KE K+E + K K
Sbjct: 521 EMAREEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILKL 574
Score = 29.3 bits (66), Expect = 2.3
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKK-EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
E +EE+ K+ K+ KK E K KE K+ K++ + K K
Sbjct: 521 EMAREEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILKL 574
Score = 28.5 bits (64), Expect = 4.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
E ++++ K+ KE+ KK E+K KE K+ K++ E
Sbjct: 521 EMAREEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSS 568
Score = 28.2 bits (63), Expect = 5.6
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
++++ K+ K++ KK + K K+ KE K++ + K K
Sbjct: 524 REEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILKL 574
Score = 27.8 bits (62), Expect = 8.0
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
++E+ K+ K+ KK + K KE ++ K+E + K K
Sbjct: 524 REEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILKL 574
Score = 27.8 bits (62), Expect = 8.9
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
E +E++ K KE+ KK + K ++ K+ KEE + K K
Sbjct: 521 EMAREEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILKL 574
>gnl|CDD|234465 TIGR04092, LTA_DltD, D-alanyl-lipoteichoic acid biosynthesis
protein DltD. Members of this protein family are DltD,
part of the DltABCD system widely distributed in the
Firmicutes for D-alanylation of lipoteichoic acids. The
most common form of LTA, as in Staphylococcus aureus,
has a backbone of polyglycerolphosphate.
Length = 383
Score = 31.0 bits (71), Expect = 0.64
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++ KK K +K E +K+ + K K KKK K+ KK + ++
Sbjct: 182 KKLYANGKKLSKFDKVYLEPYYRNLLEKEDDLFSRFKLKYKKKIKKAAKKLPETYDWEEL 241
Query: 265 KKKKKDEGRRR 275
KK + EG++R
Sbjct: 242 DKKAEKEGKKR 252
Score = 29.1 bits (66), Expect = 2.4
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+K K+ K ++ E EK+ + K K KKK K+ KK E +E
Sbjct: 182 KKLYANGKKLSKFDKVYLEPYYRNLLEKEDDLFSRFKLKYKKKIKKAAKKLPETYDWEEL 241
Query: 252 KKKEKKKKKKK 262
KK +K+ KK+
Sbjct: 242 DKKAEKEGKKR 252
Score = 28.0 bits (63), Expect = 5.5
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKK---KKKKKKEKKKKKKEKKKKKEEKKKEKK 257
++ KK K +K + EK+ + K K KKK KK KK E E+
Sbjct: 182 KKLYANGKKLSKFDKVYLEPYYRNLLEKEDDLFSRFKLKYKKKIKKAAKKLPETYDWEEL 241
Query: 258 KKKKKKEKKKK 268
KK +KE KK+
Sbjct: 242 DKKAEKEGKKR 252
Score = 27.6 bits (62), Expect = 8.9
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 19/103 (18%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK--KKE 244
K+ K+ + ++ E + +++ + + K +KK KK KK + ++
Sbjct: 182 KKLYANGKKLSKFDKVYLEPYYRNLLEKEDDLFSRFKLKYKKKIKKAAKKLPETYDWEEL 241
Query: 245 KKKKKEEKKKE-----------------KKKKKKKKEKKKKKD 270
KK ++E KK KKK KK K +K D
Sbjct: 242 DKKAEKEGKKRTTNNPFGIDNKYYNKRIKKKLKKLKGSQKNFD 284
>gnl|CDD|206307 pfam14138, COX16, Cytochrome c oxidase assembly protein COX16.
This family represents homologues of COX16 which has
been shown to be involved in assembly of cytochrome
oxidase. Protein in this family are typically between
106 and 134 amino acids in length.
Length = 79
Score = 29.0 bits (66), Expect = 0.65
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEK---KKEKKKEKKKKEKKKEKKKKKKKKKE 237
R +R RK ++ E+EE K KK+ K ++E + + E + + K+E
Sbjct: 25 RYERRDRKVQQLEEEEALKLLKKRRKVDLEEEYYRLQGLDIDDWENVRVPRPKEE 79
>gnl|CDD|236272 PRK08475, PRK08475, F0F1 ATP synthase subunit B; Validated.
Length = 167
Score = 30.4 bits (69), Expect = 0.65
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK-EKKKEKKKK---EKKKEKKKKKKKKKEK 238
+ R + KR +E +EK +E KE+K+ KK E+ KEK + KKE +K +++
Sbjct: 52 KSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQ 111
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKE 264
K E K E+ E + +K ++E
Sbjct: 112 TKDDIENLIKSFEELMEFEVRKMERE 137
Score = 28.8 bits (65), Expect = 1.9
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK------KKKKKKEKKKKKKEKK 246
+ + K E+ +EK KE K++K+ KK E+ KEK + KK+ +K +K+ K
Sbjct: 54 RINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTK 113
Query: 247 KKKEEKKKEKKKKKKKKEKKKKK 269
E K ++ + + +K ++
Sbjct: 114 DDIENLIKSFEELMEFEVRKMER 136
Score = 27.7 bits (62), Expect = 5.5
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK-----KKEKKKKKKKKEKKKKKD 270
K+ E+ +EK K+ K+KKE KK E+ K+K E KKE +K EK+ K D
Sbjct: 60 KRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDD 115
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 31.1 bits (70), Expect = 0.67
Identities = 18/88 (20%), Positives = 36/88 (40%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ + E+ +E K +K K +++ + K K + K+K ++
Sbjct: 271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG 330
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K EK K + E K+E+ K + + K
Sbjct: 331 KLEKLKSEIELKEEEIKALQSNIDELHK 358
Score = 31.1 bits (70), Expect = 0.71
Identities = 18/83 (21%), Positives = 36/83 (43%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K + + EK +E K +K K +K + K + K + K+K +E K E+
Sbjct: 275 NLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEK 334
Query: 252 KKKEKKKKKKKKEKKKKKDEGRR 274
K E + K+++ + + +
Sbjct: 335 LKSEIELKEEEIKALQSNIDELH 357
Score = 27.6 bits (61), Expect = 9.6
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 167 DNLEYGYKGGKK---ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
DNL + K + + R + R K + E ++K +E + +K K + E
Sbjct: 281 DNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIE 340
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K+E+ K + ++ K+ K+ E+ + ++++K
Sbjct: 341 LKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREK 379
>gnl|CDD|220222 pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium
adhesin A) is an adhesin which forms two alpha helices.
Length = 126
Score = 29.9 bits (67), Expect = 0.68
Identities = 21/74 (28%), Positives = 45/74 (60%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+KEE + EE+K+EK+ +K+ ++ KE++ +++ K KE+ K + K + K+ K+ +
Sbjct: 41 QKEEARFEEEKQEKETAEKEVQELKERQLGREELYAKLKEESKTRFHKDEYKKLLKRYDE 100
Query: 258 KKKKKKEKKKKKDE 271
K ++K K++
Sbjct: 101 YLNKLEQKITDKEQ 114
>gnl|CDD|203922 pfam08377, MAP2_projctn, MAP2/Tau projection domain. This domain is
found in the MAP2/Tau family of proteins which includes
MAP2, MAP4, Tau, and their homologs. All isoforms contain
a conserved C-terminal domain containing tubulin-binding
repeats (pfam00418), and a N-terminal projection domain
of varying size. This domain has a net negative charge
and exerts a long-range repulsive force. This provides a
mechanism that can regulate microtubule spacing which
might facilitate efficient organelle transport.
Length = 1134
Score = 31.3 bits (70), Expect = 0.70
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
E+ E KEE+ +++ + EK +KEK + + + E+K KKE ++ + K
Sbjct: 1031 EQLETIPKEERAEKEARRPSLEKHRKEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRK 1090
Query: 257 KKKKKKKEKKKKKD 270
K KK E KK +
Sbjct: 1091 KAVYKKAELAKKSE 1104
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the parasitophorous
vacuole membrane. Members have an initial hydrophobic,
Phe/Tyr-rich, stretch long enough to span the membrane,
a highly charged region rich in Lys, a second putative
transmembrane region and a second highly charged, low
complexity sequence region. Some members have up to 100
residues of additional C-terminal sequence. These genes
have been shown to be found in the sub-telomeric regions
of both Plasmodium falciparum and P. yoelii chromosomes.
Length = 82
Score = 28.8 bits (65), Expect = 0.70
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKK 263
KKKK KK KK + EKKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 28.8 bits (65), Expect = 0.80
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKK 235
KK+K K+ KK + EKKKK KKK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.8 bits (60), Expect = 4.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKK 249
K+KK KK KK + +KK+K KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.8 bits (60), Expect = 4.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKK 239
KK+K KK KK + +KKKK +KK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.4 bits (59), Expect = 4.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKK 262
KKKK +K KK ++ ++KKK KKK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.1 bits (58), Expect = 6.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKK 226
KK++ KK KK + EKKKK KKK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 25.7 bits (57), Expect = 8.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKK 248
KK+K KK KK + +KKK+ KKK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 31.0 bits (70), Expect = 0.70
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K+ KK K K+ K + K K KK+ + K KK K K K + +
Sbjct: 460 KELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANLQDVGEC 518
Score = 29.5 bits (66), Expect = 2.2
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
KE +KK K ++ K K K K KK+ + K KK K K K
Sbjct: 460 KELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKAN 511
Score = 29.1 bits (65), Expect = 3.1
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K+ +KK K K+ K K K K KK+ + K +K K K K +D G
Sbjct: 460 KELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANLQDVG 516
Score = 28.3 bits (63), Expect = 5.4
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKK------KEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KE KK K K+ K + K K KK + K KK K K K + E
Sbjct: 460 KELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANLQDVGECS 519
Query: 253 KKEKKKKKKKKEKKKKKDEGR 273
K+K K+ +
Sbjct: 520 SPPNNKEKNDKQTSTSSSVLK 540
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 30.6 bits (70), Expect = 0.70
Identities = 20/66 (30%), Positives = 46/66 (69%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KERR + +R+ KR +KEE +++ EKK+E +EK+KE ++++ E+K+++ ++
Sbjct: 74 KERRNELQRQEKRLLQKEETLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELI 133
Query: 238 KKKKKK 243
++++++
Sbjct: 134 EEQQQE 139
Score = 29.8 bits (68), Expect = 0.98
Identities = 23/89 (25%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 191 KRKKEEEEKEEEKK-----EEKKKEKKKEKKKEKK---KKEKKKEKKKKKKKKKEKKKKK 242
K++ E KEE K E + KE++ E ++++K +KE+ ++K + +KKE+ ++
Sbjct: 51 KKEALLEAKEEIHKLRAEAERELKERRNELQRQEKRLLQKEETLDRKDESLEKKEESLEE 110
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KEK+ +++ E+K+++ ++ ++++ E
Sbjct: 111 KEKELAARQQQLEEKEEELEELIEEQQQE 139
Score = 29.8 bits (68), Expect = 1.2
Identities = 22/89 (24%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK-KKKEKKKEKKKKKKKK 235
KKE + + + + R + E E +E + E +++EK+ +K+E +K++ EKK++ ++
Sbjct: 51 KKEALLEAKEEIHKLRAEAERELKERRNELQRQEKRLLQKEETLDRKDESLEKKEESLEE 110
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
KEK+ ++++ +++E++ E+ +++++E
Sbjct: 111 KEKELAARQQQLEEKEEELEELIEEQQQE 139
Score = 29.4 bits (67), Expect = 1.4
Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 11/88 (12%)
Query: 195 EEEEKE-EEKKEEKKKEKKKEKKK-----EKKKKEKKKEKKKKKK---KKKEKKKKKKEK 245
EE +KE E K+E E K+E K E++ KE++ E ++++K +K+E +K E
Sbjct: 41 EEAKKEAEALKKEALLEAKEEIHKLRAEAERELKERRNELQRQEKRLLQKEETLDRKDES 100
Query: 246 KKKKEEK--KKEKKKKKKKKEKKKKKDE 271
+KKEE +KEK+ ++++ ++K++E
Sbjct: 101 LEKKEESLEEKEKELAARQQQLEEKEEE 128
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 30.4 bits (69), Expect = 0.72
Identities = 14/67 (20%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K R R++ + +K++E+ EE++ E+++E E ++ + K+K K+++K +
Sbjct: 100 KSDPNYEIRSDVRRQLRFLAQKQKEE-EERRVERRRELGLEDPEQLRLKQKAKEEQKAES 158
Query: 238 KKKKKKE 244
++ + +
Sbjct: 159 EETRHRA 165
Score = 28.9 bits (65), Expect = 2.9
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K+K++E+++ E+++E + ++ K+K KE++K + E+
Sbjct: 121 KQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 28.1 bits (63), Expect = 4.2
Identities = 12/44 (27%), Positives = 31/44 (70%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+K++E+++ ++ ++ E+ ++ + K+K K+E+K + +E R R
Sbjct: 121 KQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRHR 164
>gnl|CDD|220410 pfam09798, LCD1, DNA damage checkpoint protein. This is a family
of proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 30.9 bits (70), Expect = 0.72
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 19/107 (17%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
Q++++ + K+K E +E+ +E +K K++ + E ++K E++ +
Sbjct: 11 QQKQEERNKQKSRVNELKEKHDQELQKLKQELQSLEDERKFLVLEQRGLSANDLRTELSP 70
Query: 243 KEK-------------------KKKKEEKKKEKKKKKKKKEKKKKKD 270
K+KK E K+ + K D
Sbjct: 71 PSNLLKTSDASHIADESQPNSIKQKKREISPVKELVPLNPNRIIKDD 117
Score = 27.9 bits (62), Expect = 7.7
Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 200 EEEKKEEKKKEKKKEKK-KEKKKKEKKKEKKKKKKKKKEKK 239
+++K+EE+ K+K + + KEK +E +K K++ + + E+K
Sbjct: 10 QQQKQEERNKQKSRVNELKEKHDQELQKLKQELQSLEDERK 50
Score = 27.5 bits (61), Expect = 8.7
Identities = 11/62 (17%), Positives = 33/62 (53%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+++K++++ K+K + + K+K ++ +K K+E + + E+K E++ + +
Sbjct: 10 QQQKQEERNKQKSRVNELKEKHDQELQKLKQELQSLEDERKFLVLEQRGLSANDLRTELS 69
Query: 266 KK 267
Sbjct: 70 PP 71
>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis. RRF is believed to bind the ribosome at the
A-site in a manner that mimics tRNA, but the specific
mechanisms remain unclear. RRF is essential for
bacterial growth. It is not necessary for cell growth
in archaea or eukaryotes, but is found in mitochondria
or chloroplasts of some eukaryotic species.
Length = 179
Score = 30.3 bits (69), Expect = 0.73
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ERRK+ + K K EE K + +++ + KK +K+KE +++ KK ++ +
Sbjct: 103 EERRKELVKDAK---KIAEEAKVAIRNI--RRDANDKIKKLEKEKEISEDEVKKAEEDLQ 157
Query: 238 KKKKKKEKKKKKEEKKKEKK 257
K + KK + K KEK+
Sbjct: 158 KLTDEYIKKIDELLKSKEKE 177
Score = 29.5 bits (67), Expect = 1.2
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
EE+++E K+ KK ++ K + K KK EK+K+ E + KK E+ +K +
Sbjct: 103 EERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDE 162
Query: 261 ---------KKKEKK 266
K KEK+
Sbjct: 163 YIKKIDELLKSKEKE 177
Score = 28.4 bits (64), Expect = 2.9
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 200 EEEKKEEKKKEKKK-EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
EE +KE K KK E+ K + ++ K KK +KEK+ + E KK +E+ +K +
Sbjct: 103 EERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDE 162
Query: 259 KKKKKEK--KKKKDE 271
KK ++ K K+ E
Sbjct: 163 YIKKIDELLKSKEKE 177
Score = 27.2 bits (61), Expect = 7.6
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 195 EEEEKEEEKKEEKKKEKKKEK----KKEKKKKEKKKEKKKKKKKKKEKKKKKK-EKKKKK 249
EE KE K +K E+ K +++ K KK EK+K+ + + KK ++ +K +
Sbjct: 103 EERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDE 162
Query: 250 EEKKKEKKKKKKKKE 264
KK ++ K K+KE
Sbjct: 163 YIKKIDELLKSKEKE 177
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 30.4 bits (69), Expect = 0.75
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++ K+ +K KE +K+ +E ++ + KK +K ++K+ +
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109
Score = 30.0 bits (68), Expect = 1.1
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
EK K+ +K K+ +K+ ++ ++ +K KK +EK+ E
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109
Score = 30.0 bits (68), Expect = 1.1
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+K KE +K K+ +K+ +E ++ KK KK ++K+ +
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109
Score = 29.6 bits (67), Expect = 1.1
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
EK +E +K K+ +K+ ++ +E KK KK ++K+ +
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109
Score = 29.2 bits (66), Expect = 1.6
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 214 EKKKEKKK--KEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
EK KE +K KE +KE ++ ++ KK KK ++K+ +
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109
Score = 29.2 bits (66), Expect = 1.6
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
EK KE +K K+ +K+ + +E KK KK ++K+ +
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109
Score = 29.2 bits (66), Expect = 1.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+K K+ +K K+ +KE ++ +E +K KK ++K+ +
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109
Score = 28.9 bits (65), Expect = 2.6
Identities = 8/38 (21%), Positives = 24/38 (63%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+K ++ +K K+ +K+ ++ ++ KK +K ++K+ +
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization
module that binds membranes and detects membrane
curvature. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions including organelle
biogenesis, membrane trafficking or remodeling, and cell
division and migration. Mutations in BAR containing
proteins have been linked to diseases and their
inactivation in cells leads to altered membrane
dynamics. A BAR domain with an additional N-terminal
amphipathic helix (an N-BAR) can drive membrane
curvature. These N-BAR domains are found in amphiphysins
and endophilins, among others. BAR domains are also
frequently found alongside domains that determine lipid
specificity, such as the Pleckstrin Homology (PH) and
Phox Homology (PX) domains which are present in beta
centaurins (ACAPs and ASAPs) and sorting nexins,
respectively. A FES-CIP4 Homology (FCH) domain together
with a coiled coil region is called the F-BAR domain and
is present in Pombe/Cdc15 homology (PCH) family
proteins, which include Fes/Fes tyrosine kinases, PACSIN
or syndapin, CIP4-like proteins, and srGAPs, among
others. The Inverse (I)-BAR or IRSp53/MIM homology
Domain (IMD) is found in multi-domain proteins, such as
IRSp53 and MIM, that act as scaffolding proteins and
transducers of a variety of signaling pathways that link
membrane dynamics and the underlying actin cytoskeleton.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The I-BAR domain
induces membrane protrusions in the opposite direction
compared to classical BAR and F-BAR domains, which
produce membrane invaginations. BAR domains that also
serve as protein interaction domains include those of
arfaptin and OPHN1-like proteins, among others, which
bind to Rac and Rho GAP domains, respectively.
Length = 194
Score = 30.5 bits (69), Expect = 0.75
Identities = 19/64 (29%), Positives = 39/64 (60%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+E +++ KE KK+ KK +K + ++K KK +KKKK K + E++ ++ ++K E
Sbjct: 86 KEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYE 145
Query: 256 KKKK 259
+ ++
Sbjct: 146 ELRE 149
Score = 30.1 bits (68), Expect = 0.88
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K+ KE KK +KK +K + ++K +K +KKK+ K E ++E ++ K+K E+ +
Sbjct: 89 LKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELR 148
Query: 268 K 268
+
Sbjct: 149 E 149
Score = 29.7 bits (67), Expect = 1.3
Identities = 13/58 (22%), Positives = 36/58 (62%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K+ KK+ K+ +K+++K K + + ++K +K +KK++ + + +++ ++ K+K
Sbjct: 86 KEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEK 143
Score = 28.6 bits (64), Expect = 3.0
Identities = 17/58 (29%), Positives = 35/58 (60%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K+ KK+ K+ KK+++K + + +EK KK ++KKK + + +++ ++ KEK
Sbjct: 86 KEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEK 143
Score = 27.8 bits (62), Expect = 4.4
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KK+ +E ++ +K+ K + +EK KK +KK KK K E +++ +E K+K EE
Sbjct: 90 KKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKK--KKDSSKLAEAEEELQEAKEKYEEL 147
Query: 253 KKEKKKKKKKKEKKKKKD 270
++E + K E+K+K+
Sbjct: 148 REELIEDLNKLEEKRKEL 165
Score = 27.8 bits (62), Expect = 4.5
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
Y + K+RR+K + R + +E+ KK KKK+ + + +++ ++ KEK
Sbjct: 88 YLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEK 143
Score = 27.4 bits (61), Expect = 7.7
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ KK+ K+ KK++K+ K + + +E+ KK +KKKK + + ++E
Sbjct: 86 KEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEE 136
Score = 27.0 bits (60), Expect = 9.4
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
KE KK+ K+ KK+ KK + + + ++K K+ +KKKK+ K E +++ ++ K+K
Sbjct: 86 KEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEK 143
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 31.2 bits (71), Expect = 0.75
Identities = 16/79 (20%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEK-KKEKKKEKKKKEKKKEKKKKKKKKKE 237
E R++ RR R++ +++ E +E ++ E +K + + E+++ +++ +++ +K++ ++E
Sbjct: 634 ENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQE 693
Query: 238 KKKKKKEKKKKKEEKKKEK 256
K E++ +E +++E+
Sbjct: 694 AKALNVEEQSVQETEQEER 712
Score = 27.7 bits (62), Expect = 8.3
Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 174 KGGKKERRKQRR-RKRKR---KRKKEEEEKEEEKKEEKKKEKKKEKK 216
+ ++++ RR R+R+R KR+ ++E K +E+ +E ++E++
Sbjct: 666 RTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEER 712
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 30.9 bits (70), Expect = 0.77
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KKKKK+KKK KE + KK + KK+ +EG
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFN 52
Score = 29.3 bits (66), Expect = 2.2
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKK--KEEKKKEKKKKKKK 262
KK+KKKKKK KE + KK + KK+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
Score = 29.3 bits (66), Expect = 2.3
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKK-----KKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
KKK+KKK+K KE + KK +KK+ E+ E + +
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGTNESQSSSTQ 65
Score = 29.3 bits (66), Expect = 2.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KKKKKKKKK K+ + K+ ++KK+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
Score = 28.2 bits (63), Expect = 5.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KKK+KKKKK K+ + KK +KK+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 30.8 bits (69), Expect = 0.77
Identities = 24/90 (26%), Positives = 55/90 (61%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
E + G E + K K K++++E E +E KKK +++ K E++++ +K+E+
Sbjct: 183 ENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEA 242
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+K +++E+K++ KE+ +++ + EK++K
Sbjct: 243 DRKSREEEEKRRLKEEIERRRAEAAEKRQK 272
Score = 27.3 bits (60), Expect = 8.8
Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ +KE + K KR +E + K + + E + E KE +K K+
Sbjct: 148 QKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQ 207
Query: 234 KKKEKKKKKKEKKKKKEEKKK-----EKKKKKKKKEKKKKKDEGRRR 275
K++E + +E KKK+EE++K E+++K+++ ++K +++E +RR
Sbjct: 208 KQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRR 254
Score = 27.3 bits (60), Expect = 9.0
Identities = 22/103 (21%), Positives = 60/103 (58%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
G+ K + + R E + E KE +K ++K+++ + ++ KKK ++++
Sbjct: 168 EENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERR 227
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K ++E++++K+E+ +K +++EK++ K++ E+++ + +R
Sbjct: 228 KVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKR 270
Score = 27.3 bits (60), Expect = 9.7
Identities = 23/85 (27%), Positives = 53/85 (62%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K K E E + E KE +K K+K+++ + ++ KKK+E+++K E+++++
Sbjct: 178 KLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRR 237
Query: 251 EKKKEKKKKKKKKEKKKKKDEGRRR 275
++++ +K ++++EK++ K+E RR
Sbjct: 238 KQEEADRKSREEEEKRRLKEEIERR 262
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 30.9 bits (70), Expect = 0.78
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 196 EEEKEEEKKEEKKK--------EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+E K+EE + ++K + E + KK ++ K+K KK++ KK K
Sbjct: 570 KELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGK 629
Query: 248 KKEEKKKE 255
K ++E
Sbjct: 630 SKAAAERE 637
Score = 30.1 bits (68), Expect = 1.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+E K EE + ++K + + + + + KK K+ KKK + KKK+ KK K
Sbjct: 570 KELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGK 629
Query: 260 KKK 262
K
Sbjct: 630 SKA 632
Score = 28.6 bits (64), Expect = 4.0
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+ + R++ + + + E + +K ++ K+K K KK+ KK K
Sbjct: 573 KDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGK--KKQGKKAGGGGKS 630
Query: 238 KKKKKKE 244
K ++E
Sbjct: 631 KAAAERE 637
Score = 28.2 bits (63), Expect = 5.1
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+E K+E+ + +++ + + + E + KK K+ KKK KK++ KK K
Sbjct: 570 KELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGK 629
Query: 261 KKKEKKKKKDEGR 273
K +++ D R
Sbjct: 630 SKAAAEREIDVSR 642
Score = 28.2 bits (63), Expect = 5.8
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
KE +++E E EK + ++ + E KK K+ KKK KKK+ KK K
Sbjct: 570 KELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGK 629
Query: 254 KEKKKK 259
+ +
Sbjct: 630 SKAAAE 635
>gnl|CDD|218660 pfam05620, DUF788, Protein of unknown function (DUF788). This
family consists of several eukaryotic proteins of
unknown function.
Length = 166
Score = 30.0 bits (68), Expect = 0.79
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK 219
+ E + + K+++K EK+ EK
Sbjct: 134 VLGPFASLPSSQGAETNETKSKRQEKLEKRGEK 166
Score = 26.9 bits (60), Expect = 9.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 250 EEKKKEKKKKKKKKEKKKKK 269
E + K K+++K EK+ +K
Sbjct: 147 AETNETKSKRQEKLEKRGEK 166
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 30.4 bits (69), Expect = 0.79
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K+EK K+K KEK+K +K +K + KK KK KE +++
Sbjct: 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRR 106
Score = 29.3 bits (66), Expect = 2.2
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K++K KKK K+K+K +K +K + KK KK K E RRR
Sbjct: 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIK--EIRRR 106
>gnl|CDD|221018 pfam11186, DUF2972, Protein of unknown function (DUF2972). Some
members in this family of proteins with unknown function
are annotated as sugar transferase proteins, however
this cannot be confirmed.
Length = 197
Score = 30.3 bits (69), Expect = 0.79
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKK-----KKKKKKEKKKKKKEK------KKKKEEKKKE 255
KK++ + K+ EK K+ KK KK +K+ K E+ KK KEK K+ K+ + K
Sbjct: 102 KKEDFEILKQDEKLFKKIKKYLKKFIEALEKQVKIEESKKLKEKDVLEYLKENKQLRLKF 161
Query: 256 KK 257
K
Sbjct: 162 KN 163
Score = 28.8 bits (65), Expect = 2.6
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEK-----KKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+ +E + KE K + KKE + K+ EK KK KK KK + +
Sbjct: 72 IFLEIKENYIDITKELFNKNDILDNIIICIKKEDFEILKQDEKLFKKIKKYLKKFIEALE 131
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K+ K E+ K+ K+K + K+ K +
Sbjct: 132 KQVKIEESKKLKEKDVLEYLKENKQLRLK 160
>gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated.
Length = 740
Score = 30.9 bits (70), Expect = 0.83
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+KK++EEK ++ K+EK K K K KK EK +E + + + K K
Sbjct: 669 QKKQKEEKAQQPKKEKPKSIKDIKGIGKKTAEKLEEAGITTVEALAEADPVELSKTTKIS 728
Query: 252 KKKEKK 257
KK K
Sbjct: 729 VKKIKS 734
Score = 30.5 bits (69), Expect = 1.1
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++K+KE+K ++ KKEK K K K KK EK ++ E + E K
Sbjct: 669 QKKQKEEKAQQPKKEKPKSIKDIKGIGKKTAEKLEEAGITTVEALAEADPVELSKTT 725
Score = 29.7 bits (67), Expect = 1.7
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E ++++K+EK ++ KKEK K K + KK +K ++ + E E K
Sbjct: 666 IEWQKKQKEEKAQQPKKEKPKSIKDIKGIGKKTAEKLEEAGITTVEALAEADPVELSKTT 725
Query: 261 KKKEKKKKK 269
K KK K
Sbjct: 726 KISVKKIKS 734
Score = 29.3 bits (66), Expect = 2.4
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ E ++++KEEK ++ KKE K K K+ K KK +K +E E + +
Sbjct: 662 QCNFIEWQKKQKEEKAQQPKKE--KPKSIKDIKGIGKKTAEKLEEAGITTVEALAEADPV 719
Query: 253 KKEKKKKKKKKEKKK 267
+ K K K+ K
Sbjct: 720 ELSKTTKISVKKIKS 734
>gnl|CDD|237748 PRK14537, PRK14537, 50S ribosomal protein L20/unknown domain fusion
protein; Provisional.
Length = 230
Score = 30.3 bits (68), Expect = 0.83
Identities = 14/75 (18%), Positives = 34/75 (45%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K+ + + K +K + ++K + E+K + +K E ++K + + + +
Sbjct: 114 KKFLSQFQSTTITKPKKVLINEVLQEKTINQNEEKTSLQNEKVLSPELSEEKSDSELETQ 173
Query: 251 EKKKEKKKKKKKKEK 265
+K + K+KK E
Sbjct: 174 PQKTQLKEKKPSIEH 188
Score = 30.0 bits (67), Expect = 0.99
Identities = 12/70 (17%), Positives = 32/70 (45%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+ + + KK E +++ + ++K + EK + ++K + + + + +K
Sbjct: 118 SQFQSTTITKPKKVLINEVLQEKTINQNEEKTSLQNEKVLSPELSEEKSDSELETQPQKT 177
Query: 261 KKKEKKKKKD 270
+ KEKK +
Sbjct: 178 QLKEKKPSIE 187
Score = 30.0 bits (67), Expect = 1.2
Identities = 15/80 (18%), Positives = 35/80 (43%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ K+ + + K K+ + ++K + +EK + +K + +EK +
Sbjct: 111 ELAKKFLSQFQSTTITKPKKVLINEVLQEKTINQNEEKTSLQNEKVLSPELSEEKSDSEL 170
Query: 251 EKKKEKKKKKKKKEKKKKKD 270
E + +K + K+KK + D
Sbjct: 171 ETQPQKTQLKEKKPSIEHID 190
Score = 28.8 bits (64), Expect = 2.6
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK-KKEKKKEKKKKKKKKKE 237
+ + K K+ E +++ + E+K + EK + +EK + + + +K +
Sbjct: 119 QFQSTTITKPKKVLINEVLQEKTINQNEEKTSLQNEKVLSPELSEEKSDSELETQPQKTQ 178
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K+KK + K K+ KK KE K
Sbjct: 179 LKEKKPSIEHIDLSKMLLKELKKLAKEHK 207
Score = 27.3 bits (60), Expect = 7.3
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK-KKEKKKKKKKKK 236
K+ Q + K KK + ++K + E+K + EK + +EK + + +
Sbjct: 114 KKFLSQFQSTTITKPKKVLINEVLQEKTINQNEEKTSLQNEKVLSPELSEEKSDSELETQ 173
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+K + KEKK E K K+ K+ K+
Sbjct: 174 PQKTQLKEKKPSIEHIDLSKMLLKELKKLAKE 205
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 29.2 bits (66), Expect = 0.84
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKE 214
EEE+EEE++EE+++E+ +E
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEE 94
Score = 27.7 bits (62), Expect = 2.3
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKE 218
EEE++EE+++E+++E+ +E
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
Score = 26.2 bits (58), Expect = 7.9
Identities = 11/20 (55%), Positives = 19/20 (95%)
Query: 195 EEEEKEEEKKEEKKKEKKKE 214
EEEE+EEE++EE+++E ++E
Sbjct: 76 EEEEEEEEEEEEEEEESEEE 95
Score = 26.2 bits (58), Expect = 9.3
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKE 218
+EEE++EE+++E+++E ++E
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
>gnl|CDD|220297 pfam09581, Spore_III_AF, Stage III sporulation protein AF
(Spore_III_AF). This family represents the stage III
sporulation protein AF (Spore_III_AF) of the bacterial
endospore formation program, which exists in some but
not all members of the Firmicutes (formerly called
low-GC Gram-positives). The C-terminal region of these
proteins is poorly conserved.
Length = 185
Score = 29.9 bits (68), Expect = 0.84
Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEK---KEEKKKEKKKEKKKE-----KKKKEKKKEKK 229
E ++ K+ K+ KEE + + + ++ E KE K++ ++K++ K
Sbjct: 81 LEEYAKQLEKQVEKKLKEEYGVKVKDVEVEIDEDLESNNFDIKEVNVTLKEESKEKQKSK 140
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ + K KE++++ EE +K K + K++
Sbjct: 141 VEPVVIDTQTSKPKEEEEESEEAEKIKNFLADEYNIPKEQ 180
Score = 28.4 bits (64), Expect = 3.2
Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK----------KKKKKKKEK 238
+ K+K+ + + EE K+ +K+ +K+ K++ K K KE
Sbjct: 66 ESKKKEIQASQRAYILEEYAKQLEKQVEKKLKEEYGVKVKDVEVEIDEDLESNNFDIKEV 125
Query: 239 K---KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K++ ++K+K + + + K ++++++ E
Sbjct: 126 NVTLKEESKEKQKSKVEPVVIDTQTSKPKEEEEESE 161
>gnl|CDD|219186 pfam06810, Phage_GP20, Phage minor structural protein GP20. This
family consists of several phage minor structural
protein GP20 sequences of around 180 residues in length.
The function of this family is unknown.
Length = 156
Score = 30.0 bits (68), Expect = 0.85
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+ + K +K E++ KK+ K ++K+ E KKK K E+ +KK EK K++ + KE+ +
Sbjct: 16 QNPKSKLDKANEERDSLKKQLKNRDKQIEDLKKKVKDNEELQKKIEKLKQQNKTAKEEYE 75
Query: 259 KKKKKEKK 266
K K
Sbjct: 76 AKLADTKL 83
Score = 28.9 bits (65), Expect = 1.7
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K K K EE++ KK+ K ++K+ E K+K K ++ +KK +K K++ K K++ + K
Sbjct: 19 KSKLDKANEERDSLKKQLKNRDKQIEDLKKKVKDNEELQKKIEKLKQQNKTAKEEYEAKL 78
Query: 249 KEEKKKEKKKKKKKKEKKKKKD 270
+ K + KK K +
Sbjct: 79 ADTKLNNAIELALKKAKARNAK 100
Score = 27.3 bits (61), Expect = 6.3
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKE-KKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ + K ++ EE+ KK+ K ++K+ ++ KKK K ++ +KK +K K++ K K+E +
Sbjct: 16 QNPKSKLDKANEERDSLKKQLKNRDKQIEDLKKKVKDNEELQKKIEKLKQQNKTAKEEYE 75
Query: 253 KKEKKKKKKKKEKKKKKDEGRR 274
K K + K R
Sbjct: 76 AKLADTKLNNAIELALKKAKAR 97
Score = 26.5 bits (59), Expect = 9.7
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
EE+ ++ E K+ + K K K E++ KK+ K + ++ + K+K K EE +K+
Sbjct: 1 EEQIDKIMAEYGKDIQNPKSKLDKANEERDSLKKQLKNRDKQIEDLKKKVKDNEELQKKI 60
Query: 257 KKKKKKKEKKKK 268
+K K++ + K+
Sbjct: 61 EKLKQQNKTAKE 72
>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
Length = 694
Score = 30.9 bits (70), Expect = 0.85
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK 217
RRR + + + ++EEE + + K+ KE+ +
Sbjct: 325 RRRAARAAAEAAKVKREEESAQAEAKDSVKEQLR 358
Score = 30.1 bits (68), Expect = 1.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK 212
RR R K K+EEE + E K+ K++ +
Sbjct: 326 RRAARAAAEAAKVKREEESAQAEAKDSVKEQLR 358
Score = 28.5 bits (64), Expect = 4.5
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
R+R + E + +++EE + + K+ KE+ +
Sbjct: 325 RRRAARAAAEAAKVKREEESAQAEAKDSVKEQLR 358
>gnl|CDD|219555 pfam07753, DUF1609, Protein of unknown function (DUF1609). This
region is found in a number of hypothetical proteins
thought to be expressed by the eukaryote Encephalitozoon
cuniculi, an obligate intracellular microsporidial
parasite. It is approximately 200 residues long.
Length = 230
Score = 30.1 bits (68), Expect = 0.86
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EE E+ E EE + KKK KKK K K K+ + +K EK K++ +K
Sbjct: 3 EESEEAEVPLEEMAVGGARAKKKGGKKKSKGGRHCYKIHKRVLRWRKSPEKIKEELDKGS 62
Query: 255 EKKKKKKKKEKKKKKDE 271
E+K K + E+ K++
Sbjct: 63 EEKWKGRSIEEIKEQKV 79
>gnl|CDD|130844 TIGR01784, T_den_put_tspse, conserved hypothetical protein
(putative transposase or invertase). Several lines of
evidence suggest that members of this family (loaded as
a fragment mode model to find part-length matches) are
associated with transposition, inversion, or
recombination. Members are found in small numbers of
genomes, but in large copy numbers in many of those
species, including over 30 full length and fragmentary
members in Treponema denticola. The strongest
similarities are usually within rather than between
species. PSI-BLAST shows similarity to proteins
designated as possible transposases, DNA invertases
(resolvases), and recombinases. In the oral pathogenic
spirochete Treponema denticola, full-length members are
often found near transporters or other membrane
proteins. This family includes members of the putative
transposase family pfam04754.
Length = 270
Score = 30.4 bits (69), Expect = 0.86
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 175 GGKKERRK-QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
KE ++R K EEE +EE EE E K E K+ K E+
Sbjct: 201 LSSKELELYEQREKYMTDAISAEEEGKEEGIEEGILEAKLETAKKLLKNGLTLEQ 255
Score = 28.1 bits (63), Expect = 4.1
Identities = 13/75 (17%), Positives = 30/75 (40%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ + +K +++ K KE + ++++K +++ K++ EE
Sbjct: 175 DNQSVNLIFLQIPFIQKAEEEIKTLLLSSKELELYEQREKYMTDAISAEEEGKEEGIEEG 234
Query: 253 KKEKKKKKKKKEKKK 267
E K + KK K
Sbjct: 235 ILEAKLETAKKLLKN 249
Score = 27.4 bits (61), Expect = 8.2
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 179 ERRKQRRRKRKRKRK--KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+ +++ K + EEE KEE +E E K E KK K ++
Sbjct: 200 LLSSKELELYEQREKYMTDAISAEEEGKEEGIEEGILEAKLETAKKLLKNGLTLEQ 255
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 30.8 bits (69), Expect = 0.87
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++E+K K E K K+EKK KK +K +K++ + + + ++ + E+ +++K
Sbjct: 341 RDEEKARKYWEANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDAEDIEEAIEEEKN 400
Query: 264 EKK 266
+ +
Sbjct: 401 QSE 403
Score = 30.0 bits (67), Expect = 1.4
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E+K K E K K+EKK K+ +K +KE+ + + E + + ++ +E+K +
Sbjct: 343 EEKARKYWEANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDAEDIEEAIEEEKNQS 402
Query: 270 D 270
+
Sbjct: 403 E 403
Score = 28.4 bits (63), Expect = 4.4
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 166 GDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEK--KEEKKKEKKKEKKKEK-KKK 222
G + Y K + +Q R R E K + +E +
Sbjct: 39 GKKVIYDLKKSSSDEEEQDYELRPRVSSSWNNESYNRLPIKTKDNVVADVNNGEEFLSES 98
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
E + + K EK+K +E+K E K++ +K++
Sbjct: 99 ESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKER 139
Score = 28.1 bits (62), Expect = 5.8
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKK---EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
++EEK + + K K+EKK KK K +K++ + + + + E ++ E++K
Sbjct: 341 RDEEKARKYWEANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDAEDIEEAIEEEKN 400
Query: 256 KKK 258
+ +
Sbjct: 401 QSE 403
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related to
pfam00005.
Length = 85
Score = 28.7 bits (65), Expect = 0.88
Identities = 19/64 (29%), Positives = 39/64 (60%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E+KEE ++++K +K++K+ +K ++ + + K K K+ + + K +K ++ EK E
Sbjct: 19 LEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQAQSRIKALEKMERIEKPVE 78
Query: 256 KKKK 259
KK K
Sbjct: 79 KKPK 82
Score = 26.4 bits (59), Expect = 5.0
Identities = 17/63 (26%), Positives = 39/63 (61%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E+KEE+ ++++K +K++K+ +K +E + + K K K+ + + K E+ ++ +K +
Sbjct: 19 LEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQAQSRIKALEKMERIEKPVE 78
Query: 261 KKK 263
KK
Sbjct: 79 KKP 81
Score = 25.6 bits (57), Expect = 10.0
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+KEE +++EK E K++K+ +K +E + + K K K+ + + K +K E+ +K E
Sbjct: 20 EQKEERLEQQEKAYE-KQQKEIKKLEEFIDRFRAKASKAKQAQSRIKALEKMERIEKPVE 78
Query: 252 KKK 254
KK
Sbjct: 79 KKP 81
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 30.7 bits (69), Expect = 0.94
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R K R K+ EEK+ KKEE++ + + ++E + K+ K+ + +
Sbjct: 484 RLKSEADSRVNAEKQLAEEKKR-KKEEEETAARAAAQAAASREECAESLKQAKQDLEMEI 542
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
KK + K KEE+ + +K+ ++ K ++
Sbjct: 543 KKLEHDLKLKEEECRMLEKEAQELRKYQE 571
Score = 28.7 bits (64), Expect = 3.9
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+K + K K+K+K+ + EK+ K + + +K+ E+KK+KKE+++
Sbjct: 453 LKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEET 512
Query: 249 -----------KEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+EE + K+ K+ E + KK E +
Sbjct: 513 AARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLK 550
Score = 28.3 bits (63), Expect = 4.8
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 14/76 (18%)
Query: 189 KRKRKKEEEEK----------EEEKKEEKKKEKKKEKKKEKKKKEK----KKEKKKKKKK 234
++KRKKEEEE E+ E K+ K++ + E KK E K+E+ + +K
Sbjct: 502 EKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEK 561
Query: 235 KKEKKKKKKEKKKKKE 250
+ ++ +K +E +K+ E
Sbjct: 562 EAQELRKYQESEKETE 577
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 30.4 bits (70), Expect = 0.98
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 180 RRKQRRRKRK----------RKRKKEEEEKEEEKKEEKK--KEKKKEKKKEKKKKEKKKE 227
+ +R +R++ + E EE + E KE + K+K + + E
Sbjct: 15 KEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAE 74
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEE 251
K+ K++ K + + E + + EE
Sbjct: 75 VKELKEEIKALEAELDELEAELEE 98
Score = 29.7 bits (68), Expect = 2.0
Identities = 15/81 (18%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKK--EKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
++ KR + E + +E+++E + E+ + ++ K+ + K+K + + +
Sbjct: 15 KEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAE 74
Query: 244 EKKKKKEEKKKEKKKKKKKKE 264
K+ K+E K E + + + E
Sbjct: 75 VKELKEEIKALEAELDELEAE 95
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 28.9 bits (65), Expect = 0.98
Identities = 14/79 (17%), Positives = 36/79 (45%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+ + ++ + KE E+ E EE ++E +K ++ ++ ++ E++ ++ + +
Sbjct: 20 DEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAE 79
Query: 239 KKKKKEKKKKKEEKKKEKK 257
K+ K E K E
Sbjct: 80 KEASAILSKAAEGKVVEAA 98
Score = 27.4 bits (61), Expect = 3.3
Identities = 16/84 (19%), Positives = 48/84 (57%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
R+ K+ + ++E E+ +E+ ++ KE ++E ++ ++ E++ +K ++ ++ ++E ++
Sbjct: 10 REIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEE 69
Query: 248 KKEEKKKEKKKKKKKKEKKKKKDE 271
+ EE E +K+ K + +
Sbjct: 70 EAEEILAEAEKEASAILSKAAEGK 93
Score = 27.4 bits (61), Expect = 3.7
Identities = 15/77 (19%), Positives = 44/77 (57%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
E +E KK E +++ E+ K+E ++ K+ +++ +E ++ +E+ +K ++ E+ +
Sbjct: 5 DSEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAR 64
Query: 259 KKKKKEKKKKKDEGRRR 275
++ ++E ++ E +
Sbjct: 65 EEAEEEAEEILAEAEKE 81
Score = 27.0 bits (60), Expect = 5.4
Identities = 13/83 (15%), Positives = 44/83 (53%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K + +E EE +EE ++ K+ +++ ++ ++ +E+ ++ ++ ++ ++ +++ ++
Sbjct: 14 KAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEE 73
Query: 247 KKKEEKKKEKKKKKKKKEKKKKK 269
E +K+ K E K +
Sbjct: 74 ILAEAEKEASAILSKAAEGKVVE 96
Score = 26.2 bits (58), Expect = 8.4
Identities = 13/86 (15%), Positives = 44/86 (51%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K+ + ++ +EE E+ KE +++ ++ ++ E++ ++ +E ++ +++ E++ +
Sbjct: 13 KKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAE 72
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ + +KE K + K +
Sbjct: 73 EILAEAEKEASAILSKAAEGKVVEAA 98
Score = 26.2 bits (58), Expect = 9.0
Identities = 11/74 (14%), Positives = 37/74 (50%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE +Q ++ + + ++ EE EEE ++ ++ ++ +++ +++ E+ + +K+
Sbjct: 27 KEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAIL 86
Query: 238 KKKKKKEKKKKKEE 251
K + + +
Sbjct: 87 SKAAEGKVVEAALS 100
>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway components
[Intracellular trafficking and secretion].
Length = 94
Score = 28.9 bits (65), Expect = 0.99
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
KK + + E EE K E+ +KKKE + + +++ + + K+ KK+ K
Sbjct: 40 KKAASDVKNELDEELKLEELDDKKKELTAELQATKEELDQLASELKEDLKKKAKP 94
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes
play an important role in the degradation of both lipids
and cellular proteins. In order to perform this
degradative function, vacuoles/lysosomes contain
numerous hydrolases which have been transported in the
form of inactive precursors via the biosynthetic pathway
and are proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or Golgi
complex, or remain in the limiting membrane of the MVB
and are thereby transported to the limiting membrane of
the vacuole/lysosome as a consequence of fusion.
Therefore, the MVB sorting pathway plays a critical role
in the decision between recycling and degradation of
membrane proteins. A few archaeal sequences are also
present within this family.
Length = 169
Score = 29.9 bits (68), Expect = 0.99
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
++ ++ KK++ EKK K+ + E KK KK + K+KK+ EK+ ++
Sbjct: 7 RKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQ 59
Score = 29.5 bits (67), Expect = 1.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 181 RKQRR---RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
RK R +K++ KK ++ + E KK KK K K+KK +K+ +
Sbjct: 7 RKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQ 59
Score = 28.8 bits (65), Expect = 1.8
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE------KKKKKKEKKKKK 249
+K ++ +KK+E ++K KK + + KK KK K+ K+KK+ EK+ +
Sbjct: 7 RKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQ 59
Score = 28.0 bits (63), Expect = 4.2
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ RK R+ +++++ EKK +K + + K+ K+ K K+KK+ +K+ +
Sbjct: 1 EAILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQ 59
>gnl|CDD|216581 pfam01577, Peptidase_S30, Potyvirus P1 protease. The potyviridae
family positive stand RNA viruses with genome encoding a
polyprotein. members include zucchini yellow mosaic
virus, and turnip mosaic viruses which cause
considerable losses of crops worldwide. This family
consists of a C terminus region from various plant
potyvirus P1 proteins (found at the N terminus of the
polyprotein). The C terminus of P1 is a serine-type
protease responsible for autocatalytic cleavage between
P1 and the helper component protease pfam00851. The
entire P1 protein may be involved in virus-host
interactions.
Length = 245
Score = 30.0 bits (68), Expect = 0.99
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K+ R R+ + K+ E+ + E++EE++ + K K K +
Sbjct: 22 EKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGAY--ASIVSKITPIGTDKVSKTES 79
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+ K+ K+ KKK+KKKK +K
Sbjct: 80 VSFRTPYYKRTTKKMKKKKKKKKVVMSDK 108
Score = 30.0 bits (68), Expect = 1.2
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK----------KKK 233
R +++ K ++EK+ K + KK+EK K+E+++E++ K
Sbjct: 8 AERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGAYASIVSKIT 67
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K K E + K KK KKK+KKKK
Sbjct: 68 PIGTDKVSKTESVSFRTPYYKRTTKKMKKKKKKKK 102
Score = 30.0 bits (68), Expect = 1.2
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+ +K R RK + +++E+ K+EE+++ + + + K K +
Sbjct: 20 KQEKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGAYASIVSKITPIGTDKVSKTES 79
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ K+ KK KKKKKKKK K
Sbjct: 80 VSFRTPYYKRT---TKKMKKKKKKKKVVMSDK 108
Score = 28.5 bits (64), Expect = 3.3
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK----- 249
+ E K E+ K+ K K++KK + K + KK++K K+++++E++ +
Sbjct: 2 DLEAKVAERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGAYAS 61
Query: 250 ------------------EEKKKEKKKKKKKKEKKKKK 269
+ K+ KK KKKKK
Sbjct: 62 IVSKITPIGTDKVSKTESVSFRTPYYKRTTKKMKKKKK 99
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 30.7 bits (69), Expect = 1.0
Identities = 19/77 (24%), Positives = 33/77 (42%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ +R + + +K +EK KEK K KK++ ++ K +K K + +
Sbjct: 201 YDKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVR 260
Query: 243 KEKKKKKEEKKKEKKKK 259
+ KE KK EK
Sbjct: 261 ILRSYTKENKKDEKNVV 277
Score = 30.7 bits (69), Expect = 1.1
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEK-KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
R K+ K+ +K+ +K + + + K KEK KEK K KK ++
Sbjct: 180 RNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDG 239
Query: 239 -KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K+ K+ +K K + + + K+ KKDE
Sbjct: 240 DKQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEKN 275
Score = 29.6 bits (66), Expect = 2.4
Identities = 20/95 (21%), Positives = 38/95 (40%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
N E K KK+ + R+ + K ++K ++K + KK++ +
Sbjct: 181 NKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGD 240
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K+ K+ +K K + + KE KK +K
Sbjct: 241 KQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEKN 275
Score = 28.0 bits (62), Expect = 6.9
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK--KKKKKKKEKKKKKKEKKKKKEEKKK 254
KE K+ KK+ K + + K K K+K K++ K K+++
Sbjct: 180 RNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDG 239
Query: 255 EKKKKKKKKEKKKKKDEGRRR 275
+K+ K+ ++ K + R
Sbjct: 240 DKQTKRNSEKSKVQNSHFDVR 260
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 30.0 bits (68), Expect = 1.0
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+E+E EE+ EE +++K++E+ K ++ + +KK+ +KKKKEK
Sbjct: 136 DEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
Score = 29.6 bits (67), Expect = 1.2
Identities = 16/46 (34%), Positives = 32/46 (69%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
E E+E EE+ +E +++K++E+ K ++ + KKK+ ++KKK+K
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
Score = 29.2 bits (66), Expect = 1.6
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+EE E+ EE+KEE++ + +E + KKKE +K+KK+K
Sbjct: 142 EEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
Score = 28.4 bits (64), Expect = 3.1
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
+ EE+ EE +E+K++E+ K ++ + +KK+ +KKKK+K
Sbjct: 138 DESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
Score = 28.1 bits (63), Expect = 3.3
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
++E +EE ++ E++KE+++ K E+ + KK++ +KKKK+KE
Sbjct: 136 DEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 27.7 bits (62), Expect = 5.6
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
E +E E ++E ++ E++KE+++ K +E + KKK+ +KK+K+K
Sbjct: 132 DVEVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
Score = 27.3 bits (61), Expect = 7.2
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
E + +++ ++ +E+K+E++ K ++ + KKKE +KKK+EK
Sbjct: 136 DEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
Score = 27.3 bits (61), Expect = 7.4
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
E E++ E++ E+ +E+K++E E K ++ + KKK+ EKKKK++E
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEE---EAKLAEEALEALKKKEAEKKKKEKE 180
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 30.7 bits (69), Expect = 1.0
Identities = 15/92 (16%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK-EKKKK 241
Q + +K + + + E +++ + E++ ++ + + + K ++ +KK E +
Sbjct: 72 QLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAA 131
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ E++ K + K + + K + EK+ + E +
Sbjct: 132 EAEEEAKLLKDKLDAESLKLQNEKEDQLKEAK 163
Score = 27.6 bits (61), Expect = 7.9
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 177 KKERRKQRRR---KRKRKRKKEEEEKEEEKKEE----KKKEKKKEKKKEKKKKEKKKEKK 229
+KE +R + +RK E E+E ++ E K ++ EKK E + E ++E K
Sbjct: 79 QKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAAEAEEEAK 138
Query: 230 KKKKK-KKEKKKKKKEKKKKKEEKK 253
K K E K + EK+ + +E K
Sbjct: 139 LLKDKLDAESLKLQNEKEDQLKEAK 163
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 30.6 bits (70), Expect = 1.0
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 189 KRKRKKEEEEKEEEKKEEK--KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+R+R+ + EE + KK+ + E ++ E K + +KK K +K+ +K KK
Sbjct: 569 ERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEEDEYKAKIEKKASKMSKKELEKLIKK 628
Query: 247 KKKEEKK 253
+KE K+
Sbjct: 629 LEKEMKE 635
Score = 29.1 bits (66), Expect = 3.3
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+E E+ E + +E + KKK + + ++ + K K +KK K KKE +K
Sbjct: 566 DETERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEEDEYKAKIEKKASKMSKKELEKL 625
Query: 255 EKKKKKKKKE 264
KK +K+ KE
Sbjct: 626 IKKLEKEMKE 635
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 30.7 bits (69), Expect = 1.0
Identities = 12/84 (14%), Positives = 42/84 (50%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+RK+ +KE + E ++ ++ +K+E ++++ KK++ K+ + + +
Sbjct: 211 PCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIE 270
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKK 262
+ + +E ++ +++ + +K
Sbjct: 271 ELRAQEAVLEETQERINRARKAAP 294
Score = 28.8 bits (64), Expect = 3.8
Identities = 14/102 (13%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 176 GKKERRKQRRR--KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ R R + + K+++E ++ E + EK +K +E + K
Sbjct: 410 ATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLK 469
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+++++ + K++ ++ KK + + +++ G
Sbjct: 470 EREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCI 511
Score = 28.8 bits (64), Expect = 3.9
Identities = 11/89 (12%), Positives = 37/89 (41%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G+ K+++ ++R + + EK ++ ++ + K+ +++ + K++
Sbjct: 424 GQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHL 483
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+E +KK + E +++
Sbjct: 484 QETRKKAVVLARLLELQEEPCPLCGSCIH 512
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 30.6 bits (69), Expect = 1.0
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 20/112 (17%)
Query: 177 KKERRKQRRRKRKRKRKKEEE--------EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
K +RK RR +R R+ E++ +KE EK++++++ ++ E + + K+E K
Sbjct: 302 KPVKRKNRRGQRARQAIWEKKYGSGAKHVKKEREKEQKEREGRQSEWEARQAKREGGDAK 361
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKK------------KKKKKEKKKK 268
+ + + ++K + K+ EKKK KK KKK KEKK
Sbjct: 362 AGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPLHPSWEAKKKAKEKKAN 413
Score = 30.6 bits (69), Expect = 1.0
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K++R+KE++E+E + E + ++ K+E K + + + ++K K+ +K+K KK
Sbjct: 331 KKEREKEQKEREGRQSEWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKK 390
Query: 249 KEEKKK-----EKKKKKKKKEKKKK 268
K E KKK K+K+ K
Sbjct: 391 PSVDKPLHPSWEAKKKAKEKKANAK 415
Score = 29.8 bits (67), Expect = 1.7
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ +++ +K + R+ E E ++ +++ K + + + ++K K+ +KKK +K
Sbjct: 332 KEREKEQKEREGRQSEWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKP 391
Query: 240 KKKKE-------KKKKKEEKKKEKKKKKK 261
K KKK KE+K K + KK
Sbjct: 392 SVDKPLHPSWEAKKKAKEKKANAKFQGKK 420
Score = 28.3 bits (63), Expect = 4.7
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK------ 231
++ R+ R+ + + ++ K E + + + + ++K ++ K+ +KK+ KK
Sbjct: 338 QKEREGRQSEWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPL 397
Query: 232 ------KKKKKEKKKKKKEKKKK 248
KKK KEKK K + KK
Sbjct: 398 HPSWEAKKKAKEKKANAKFQGKK 420
Score = 27.5 bits (61), Expect = 7.7
Identities = 17/94 (18%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 194 KEEEEKEEEKKEEKKKEKKK------------EKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+++E + + KK K+K EKK K KKE++K++K+++ ++ +
Sbjct: 288 DDDDEDIDPDQVVKKPVKRKNRRGQRARQAIWEKKYGSGAKHVKKEREKEQKEREGRQSE 347
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ ++ K+E + + + + ++ R +
Sbjct: 348 WEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPK 381
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 30.2 bits (68), Expect = 1.0
Identities = 17/113 (15%), Positives = 50/113 (44%)
Query: 160 WLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK 219
W+ G D E + + ++ +++ ++ E+ + E +E++++
Sbjct: 183 WMGGPDSDEDENPLDEEAPDMTPETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDL 242
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+K+++ +E ++ +++ + E + K E + ++ E +K KDE
Sbjct: 243 RKEQELEENVERDSDDEDEHGEDSEDGETKPESYITSEYIERISEIRKMKDER 295
>gnl|CDD|237554 PRK13909, PRK13909, putative recombination protein RecB;
Provisional.
Length = 910
Score = 30.7 bits (70), Expect = 1.0
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 167 DNLEYGYKGGKKERRKQRRRKR----KRKRKKEEEEKEEEKKEEK--------------- 207
NL + Y G + + R + R K + E+EK + +EE
Sbjct: 638 SNLLFEYDGIELWQIYYRIKGRENFDKDYARALEKEKALKYEEEINVLYVAFTRAKNSLI 697
Query: 208 --KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
KK++ E + + + + K+ K KK+ K + +++ K+ +E+
Sbjct: 698 VVKKDESSGSMFEILDLKPLERGEIEIKEPKISPKKESLITSVKLKPHGYQEQVKEIEEE 757
Query: 266 KKK 268
K+
Sbjct: 758 PKE 760
>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional.
Length = 159
Score = 29.6 bits (67), Expect = 1.1
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK--EKKKKKKEK-------- 245
+ + E + +K ++ ++K +E K K +++ K K++ KK E+ K K E
Sbjct: 35 DSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKE 94
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ + E+ K + ++EK+K + E
Sbjct: 95 AHEEADLIIERAKLEAQREKEKAEYE 120
Score = 26.9 bits (60), Expect = 8.0
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK-EKKKKEKKKEKKKKKKKKKEKKKK--KK 243
K+ R+ K + E + + KEE KK ++ K K E +E KE ++ E+ K ++
Sbjct: 53 KKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQR 112
Query: 244 EKKKKKEEKKKE 255
EK+K + E K +
Sbjct: 113 EKEKAEYEIKNQ 124
Score = 26.9 bits (60), Expect = 8.9
Identities = 20/78 (25%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE-KKKKKKEKKKKKEE 251
+K +E++++ ++ + K E++ + KE+ KK ++ K K + +E K+ +E E
Sbjct: 46 EKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIER 105
Query: 252 KKKEKKKKKKKKEKKKKK 269
K E +++K+K E + K
Sbjct: 106 AKLEAQREKEKAEYEIKN 123
>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
(Trep_dent_lipo). This entry represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 394
Score = 30.3 bits (68), Expect = 1.1
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
E K++++ K E K + KE + K + ++ K E+ K+ EEKK ++ K+ + +
Sbjct: 21 EVKEQREMRIKVESSMKIEPKENEFLSKPEYDEHVKTPEQIKELEEKKAYEESLKQLQFE 80
Query: 266 KKKKD 270
K D
Sbjct: 81 LDKYD 85
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 30.3 bits (69), Expect = 1.1
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
KK E ++ ++K+ + +K + E +K EKK +K +K+ ++ + E + E
Sbjct: 282 SKKAERDRVKQKRSDLEKRVENELEKL--------EKKLEKLEKELEEAENAENYRLYGE 333
Score = 29.5 bits (67), Expect = 1.9
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
KK ++ K+K EK+ + + +K +KK +K +K+ +E + E +
Sbjct: 283 KKAERDRVKQKRSDLEKRVENELEKLEKKLEKLEKELEEAENAENYRLY 331
Score = 28.4 bits (64), Expect = 5.3
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK----KKKEKKKKKDE 271
KK ++ + K+K+ +K+ E + +K EKK EK +K+ + E + E
Sbjct: 283 KKAERDRVKQKRSDLEKRVENELEKLEKKLEKLEKELEEAENAENYRLYGE 333
Score = 28.0 bits (63), Expect = 6.7
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKE--EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+K ++ KR + +E+ E+ +E+ E E + + + + + +E ++E ++ K++K
Sbjct: 379 KKYKKLKRAVEAVEEQIEETKEEIEYLESVEAQLENAESLEDLEEIREELIEQGYLKEKK 438
Query: 239 KKKKKEKKK 247
+KKKK+KKK
Sbjct: 439 RKKKKKKKK 447
>gnl|CDD|237199 PRK12772, PRK12772, bifunctional flagellar biosynthesis protein
FliR/FlhB; Provisional.
Length = 609
Score = 30.4 bits (69), Expect = 1.1
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKK-----KKKEKKKKKDEGRRR 275
+K + K+ + K+E K+E K+ + K K K+K+++ +R
Sbjct: 468 QKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKIKQKQREMAMQR 511
Score = 30.0 bits (68), Expect = 1.3
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEE---KKKEKKKEKKKE 218
Q+ + K R ++E KEE K++E + K K K+K++E
Sbjct: 468 QKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKIKQKQRE 506
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 30.1 bits (68), Expect = 1.1
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK-------KKKKKKEKK 239
K +K +E++ E+K E + + + + +K EK K+ +K
Sbjct: 154 KEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEK 213
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+E+K E E K++ + +
Sbjct: 214 AALEEQKALAEAAAAEAAKQEAAAKAAAQ 242
Score = 27.8 bits (62), Expect = 6.8
Identities = 12/79 (15%), Positives = 29/79 (36%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ ++ +E++ E K E + E + + +K +K KE E+
Sbjct: 155 EDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKA 214
Query: 253 KKEKKKKKKKKEKKKKKDE 271
E++K + + +
Sbjct: 215 ALEEQKALAEAAAAEAAKQ 233
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 29.9 bits (67), Expect = 1.1
Identities = 25/92 (27%), Positives = 52/92 (56%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R+K R ++R+R+ +E+ EE+ + K +E+K+E K +++ KK+ + KK+ E
Sbjct: 43 RKKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEAN 102
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ + EE++ E K ++ K K+ ++E
Sbjct: 103 IDDVDTDDENEEEEYEAWKLRELKRIKRDREE 134
Score = 29.1 bits (65), Expect = 2.6
Identities = 24/99 (24%), Positives = 58/99 (58%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK+R + R+R+ ++K EE+ + K EE+K+E K ++E KK+ + K++ +
Sbjct: 44 KKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANI 103
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ E ++++ E K ++ K+ K++++++++ R +
Sbjct: 104 DDVDTDDENEEEEYEAWKLRELKRIKRDREEREEMEREK 142
Score = 28.7 bits (64), Expect = 3.3
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 191 KRKKEEEEKEEEKKEEKKKE-------KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
EEEE+E E++EE E K +K+ + +++E++ K+K E++ K+K
Sbjct: 11 DESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRK 70
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+++K+E K +++ KK+ E KK+
Sbjct: 71 AEERKRETLKIVEEEVKKELELKKRNTLLE 100
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 30.7 bits (70), Expect = 1.1
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 220 KKKEKKKEKKKKK-----KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+KK+K+ E K + +K + KK K+ KK K
Sbjct: 707 EKKKKRIELKIFSGDIHFPGETDKISRHSGILIPPGTGKKNSKESKKIKN 756
Score = 28.0 bits (63), Expect = 6.4
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 211 KKKEKKKEKKKKE----KKKEKKKKKKKKK------EKKKKKKEKKKKKEEKKKEKKKKK 260
+KK+K+ E K E K + KK KE KK K ++
Sbjct: 707 EKKKKRIELKIFSGDIHFPGETDKISRHSGILIPPGTGKKNSKESKKIKNWIYVQRITPT 766
Query: 261 KKK 263
KKK
Sbjct: 767 KKK 769
>gnl|CDD|220719 pfam10368, YkyA, Putative cell-wall binding lipoprotein. YkyA is a
family of proteins containing a lipoprotein signal and a
hydrolase domain. It is similar to cell wall binding
proteins and might also be recognisable by a host immune
defence system. It is thus likely to belong to pathways
important for pathogenicity.
Length = 205
Score = 29.6 bits (67), Expect = 1.2
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
KR++ KKE+E E+ ++E K +K EK ++KK K+K K+ K K++ + K +
Sbjct: 80 KREKLLKKEKESIEKSEEEFKSAKKYIEKIEDKKLKKKAKQLVKVMKERYKSYDKLYKAY 139
Query: 247 KKKEEKKKEKKKKKKKKEKKKKK 269
KK +KE + K K+ K+
Sbjct: 140 KKALNLEKELYEYLKDKDLTLKE 162
Score = 27.7 bits (62), Expect = 5.0
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ +++ + KK + +K++K KKEK+ +K ++E K KK +K +++K K+K
Sbjct: 58 QLGKDDNEAIKKLSDQALANVDKREKLLKKEKESIEKSEEEFKSAKKYIEKIEDKKLKKK 117
Query: 257 KKKKKKKEKKKKK 269
K+ K K++ K
Sbjct: 118 AKQLVKVMKERYK 130
Score = 27.7 bits (62), Expect = 6.2
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ K+ ++ ++++K KKEK+ +K +E+ K KK +K ++KK KKK K+ K
Sbjct: 65 EAIKKLSDQALANVDKREKLLKKEKESIEKSEEEFKSAKKYIEKIEDKKLKKKAKQLVKV 124
Query: 251 EKKKEKKKKKKKKEKKK 267
K++ K K K KK
Sbjct: 125 MKERYKSYDKLYKAYKK 141
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 30.2 bits (68), Expect = 1.2
Identities = 14/63 (22%), Positives = 38/63 (60%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
++ E+ E E++E K++ K K +++ K K+E K+++ + ++ ++ E + K +++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 253 KKE 255
+E
Sbjct: 66 MQE 68
Score = 29.5 bits (66), Expect = 2.1
Identities = 9/36 (25%), Positives = 27/36 (75%)
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ +EK ++++ ++K++ K K ++E+K K++ ++R
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQR 41
Score = 29.5 bits (66), Expect = 2.5
Identities = 10/39 (25%), Positives = 30/39 (76%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
E ++ ++K +++++++K++ K K ++++K KE+ K++E
Sbjct: 4 ELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQRE 42
Score = 28.7 bits (64), Expect = 4.0
Identities = 11/49 (22%), Positives = 33/49 (67%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
E ++ +K E++++++K++ K K ++E+K K+E K+ + + ++ ++
Sbjct: 4 ELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRR 52
Score = 27.9 bits (62), Expect = 6.6
Identities = 12/47 (25%), Positives = 30/47 (63%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++ ++K ++E++++K+ K K E ++K K++ K++E + RR
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRR 52
Score = 27.9 bits (62), Expect = 6.9
Identities = 13/63 (20%), Positives = 37/63 (58%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
R+ + K E E++E +++ + K E++++ K+E K+ + E ++ ++ + + K ++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 248 KKE 250
+E
Sbjct: 66 MQE 68
>gnl|CDD|225664 COG3122, COG3122, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 215
Score = 29.9 bits (67), Expect = 1.2
Identities = 13/63 (20%), Positives = 33/63 (52%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+R K +R KK + E + ++ K ++ +++K+ E++K+ K+ K + K+ +
Sbjct: 59 KRAKVQRLAKKSRVDAREAYRIAAEENKAEQLERDKQLSEQQKQAALAKEYKAQVKQLIE 118
Query: 244 EKK 246
+
Sbjct: 119 MNR 121
Score = 29.2 bits (65), Expect = 2.1
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KK+ K + KK + ++ + +E K ++ E+ K+ E++K+ K+ K + K+
Sbjct: 58 KKRAKVQRLAKKSRVDAREAYRIAAEENKAEQLERDKQLSEQQKQAALAKEYKAQVKQLI 117
Query: 271 EGRR 274
E R
Sbjct: 118 EMNR 121
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 30.5 bits (69), Expect = 1.2
Identities = 12/76 (15%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
KR + E EE K E++ + + ++ K +++ ++ + + + + + ++
Sbjct: 255 KRMGAYKTIEGEELLKLEERTAAWRAELRKSMKPKERTAIERVPMPELDPEYRAHNRFEE 314
Query: 249 ------KEEKKKEKKK 258
KE+ E K+
Sbjct: 315 VNLGLTKEQAMTEAKR 330
Score = 29.3 bits (66), Expect = 2.6
Identities = 10/58 (17%), Positives = 22/58 (37%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
R + + K EE + E +K K KE+ ++ + + + + + E
Sbjct: 256 RMGAYKTIEGEELLKLEERTAAWRAELRKSMKPKERTAIERVPMPELDPEYRAHNRFE 313
>gnl|CDD|240235 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisional.
Length = 211
Score = 29.8 bits (67), Expect = 1.2
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+KK ++ K K K K K K K K + EEK + ++ K+
Sbjct: 37 RKKSAPEQVPTGKNKLLLTKRSKLKGIPKPRKLHKHGFWAEIFEEKVEREELGNPCKDLD 96
Query: 267 KKKDEGRRR 275
K +G+RR
Sbjct: 97 KDIIKGKRR 105
Score = 29.1 bits (65), Expect = 2.4
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K+ E+ K K K+ K K K K + + E+K +++E
Sbjct: 34 SPNRKKSAPEQVPTGKNKLLLTKRSKLKGIPKPRKLHKHGFWAEIFEEKVEREE 87
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 29.8 bits (68), Expect = 1.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 194 KEEEEKEEEKKEEKKKE---KKKEKKKEKKKKEKKKEKKKKKKKKK 236
+EE + E E +K K+ E+ +K ++ +K KKKKK++K
Sbjct: 165 PDEELQLEVLNEIIEKGLNVKQTEELIKKLLEKPEKPKKKKKRRKG 210
Score = 27.5 bits (62), Expect = 8.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+E+ + + + EK K+ E+ KK +K +K KKK+K++K
Sbjct: 165 PDEELQLEVLNEIIEKGLNVKQTEELIKKLLEKPEKPKKKKKRRKG 210
>gnl|CDD|224031 COG1106, COG1106, Predicted ATPases [General function prediction
only].
Length = 371
Score = 30.2 bits (68), Expect = 1.2
Identities = 14/66 (21%), Positives = 25/66 (37%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+EE + E+ K+ + K E K K + K + K + +K K +
Sbjct: 66 WNGSYGKEESNLDIFFEQDKEVEIISKNTENNKFNFKLQIKFEINGFPSKDESRKVNKIE 125
Query: 249 KEEKKK 254
+K K
Sbjct: 126 ITKKSK 131
Score = 27.9 bits (62), Expect = 5.9
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+R+ KEE + ++ KE + K E K K + K +
Sbjct: 60 EREINIWNGSYGKEESNLDIFFEQ-----DKEVEIISKNTENNKFNFKLQIKFEINGF-- 112
Query: 247 KKKEEKKKEKKKKKKKKEK 265
K+E +K K + KK K
Sbjct: 113 PSKDESRKVNKIEITKKSK 131
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is
involved in recombination. Rap (recombination adept with
plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 29.6 bits (67), Expect = 1.2
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K+EK +EKK+K + + ++++ K +KEK K + + K
Sbjct: 35 KREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 28.5 bits (64), Expect = 3.0
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K++K ++KK+K E + E+++ K +KEK K + +
Sbjct: 35 KREKAQEKKRKAEAQAERRELKARKEKLKTRSD 67
Score = 27.7 bits (62), Expect = 4.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K++K ++KK K + + E+++ K K+K K + KE
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKE 71
Score = 27.3 bits (61), Expect = 6.1
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K++K ++K++K + + ++ + K +KEK K + + KE
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKE 71
Score = 27.3 bits (61), Expect = 7.7
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
K+EK +EKK++ + + +++E K +K+K K + KE
Sbjct: 35 KREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKE 71
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 30.3 bits (69), Expect = 1.3
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
E E + + + EK+ ++++ +KEKK ++ + K+ + + EK+ +
Sbjct: 404 DELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELE 451
Score = 29.6 bits (67), Expect = 2.1
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+R+ + E EKE ++E+ +KEKK + K K+ + E +K+ +
Sbjct: 407 ERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELE 451
Score = 28.4 bits (64), Expect = 4.4
Identities = 15/63 (23%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
R R + ++ +E ++ E + + + EK+ +++++ +KEKK + K K+ + E +K+
Sbjct: 392 RVRLEIDKPEELDELERELAQLEIEKEALEREQD-EKEKKLIDEIIKLKEGRIPELEKEL 450
Query: 250 EEK 252
E +
Sbjct: 451 EAE 453
Score = 28.0 bits (63), Expect = 5.8
Identities = 11/49 (22%), Positives = 29/49 (59%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+E + R + + +KE E+E+++KE+K ++ + K+ + + +K+
Sbjct: 401 EELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKE 449
>gnl|CDD|232951 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type.
This model describes a glycyl-tRNA synthetase distinct
from the two alpha and two beta chains of the tetrameric
E. coli glycyl-tRNA synthetase. This enzyme is a
homodimeric class II tRNA synthetase and is recognized
by pfam model tRNA-synt_2b, which recognizes His, Ser,
Pro, and this set of glycyl-tRNA synthetases [Protein
synthesis, tRNA aminoacylation].
Length = 551
Score = 30.2 bits (68), Expect = 1.3
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK-KKKKKKKKEK 238
+ + + + +E E K E + KKK K +K +K + + +++E+
Sbjct: 326 TQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREE 385
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+ K E + K+ + E + EK
Sbjct: 386 ELDKNEVELDKDLVEIEMVTEVVHGEK 412
>gnl|CDD|221550 pfam12366, Casc1, Cancer susceptibility candidate 1. This domain
family is found in eukaryotes, and is typically between
216 and 263 amino acids in length. Casc1 has many SNPs
associated with cancer susceptibility.
Length = 227
Score = 29.7 bits (67), Expect = 1.3
Identities = 12/51 (23%), Positives = 16/51 (31%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
R + K E+ E + K+ K K K E K K E
Sbjct: 58 DTFHVRYELYISKIAEEAEGARGYVTDIPKEYKAKPVKYLEIPKPIKDPPE 108
Score = 28.5 bits (64), Expect = 2.9
Identities = 8/56 (14%), Positives = 17/56 (30%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ + E + + K ++ + + K+ K K K E K
Sbjct: 46 QPDIQNEIIFSMDTFHVRYELYISKIAEEAEGARGYVTDIPKEYKAKPVKYLEIPK 101
Score = 27.7 bits (62), Expect = 6.0
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ + K ++ + + KE K K K E K K+
Sbjct: 58 DTFHVRYELYISKIAEEAEGARGYVTDIPKEYKAKPVKYLEIPKPIKD 105
Score = 27.4 bits (61), Expect = 7.0
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
R + E+ E + K+ K K K E K
Sbjct: 60 FHVRYELYISKIAEEAEGARGYVTDIPKEYKAKPVKYLEIPK 101
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 30.0 bits (67), Expect = 1.4
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+Q RK+ E++ ++ E +K + EK K K+ K+K+K K+ + +
Sbjct: 139 APSEQTVAVEARKQTAEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQ 198
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K + K +K + K K K+K ++
Sbjct: 199 SNSKPIETAPKADKADKTKPKPKEKAER 226
Score = 29.7 bits (66), Expect = 1.5
Identities = 17/97 (17%), Positives = 40/97 (41%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ E+ + R ++ E+ + K+ +KK +K + +K + +K
Sbjct: 118 QRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAQKTPVETEKIA 177
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K ++ K+K++ K+ + + K + K K D
Sbjct: 178 SKVKEAKQKQKALPKQTAETQSNSKPIETAPKADKAD 214
>gnl|CDD|221569 pfam12420, DUF3671, Protein of unknown function. This domain
family is found in eukaryotes, and is typically between
96 and 116 amino acids in length.
Length = 106
Score = 28.4 bits (64), Expect = 1.4
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
KKK KK + +KK + K KK +KKK KK KK
Sbjct: 1 KKKGLKKLDCYCEKKIFDKIDYIDKLKKDPNIDKKKFKKIIFKKYGLI 48
>gnl|CDD|227453 COG5124, COG5124, Protein predicted to be involved in meiotic
recombination [Cell division and chromosome partitioning
/ General function prediction only].
Length = 209
Score = 29.5 bits (66), Expect = 1.4
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 162 WGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
W L+ Y + ++K + K+ KEE +KE+ + +K E +K +E
Sbjct: 70 WSFKSQTLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKATRRKKFTEGQKNYNREALL 129
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+++KKE+ + KKK +K + + + ++K+KK
Sbjct: 130 EKRKKEQDEIKKKLNSLQKIEPIRWDAAKIQEKKKK 165
Score = 28.4 bits (63), Expect = 3.6
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK------KKEKKKKKKKKKEKKK 240
+K E +K+ ++ ++ K+E KEK + K K ++ +K++K++
Sbjct: 77 LQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKATRRKKFTEGQKNYNREALLEKRKKEQ 136
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ +KK +K + + K ++KKKK +
Sbjct: 137 DEIKKKLNSLQKIEPIRWDAAKIQEKKKKVHLNK 170
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 30.1 bits (67), Expect = 1.4
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
R+R EEEE E+E K++ E+ E + E K +++K +E+
Sbjct: 372 RRRAASLSGEEEEPEDELKDDVDGEQADESEHETLALR------KNARQRKAGLASPEEE 425
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+EE+K KKK+ ++ K++ G
Sbjct: 426 ALGEEEQKAPPKKKQLNQKNKQQTGSG 452
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 30.0 bits (68), Expect = 1.4
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 199 KEEEKKE--EKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
KE+EK+E +K K K++ K K++++ K K
Sbjct: 202 KEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
Score = 29.6 bits (67), Expect = 2.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
K +E +KE+ +K K K+K K + KK+E+ K K
Sbjct: 200 KIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
Score = 29.2 bits (66), Expect = 2.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K K K+ EK++ KK K K+K K + KKE++ K K
Sbjct: 197 KYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
Score = 28.8 bits (65), Expect = 3.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K+++K+E KK K ++K K + KK+E+ K K
Sbjct: 202 KEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
Score = 28.8 bits (65), Expect = 3.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K K KE +K++ KK K K+K K + +K+++ K K
Sbjct: 197 KYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
Score = 28.5 bits (64), Expect = 5.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K K KE +KE+ K+ K K+K K + KKE++ K
Sbjct: 197 KYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKP 238
Score = 28.1 bits (63), Expect = 5.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K KE +KE+ +K K K+K K + KK+++ + K
Sbjct: 200 KIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
Score = 27.3 bits (61), Expect = 9.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K+++K++ KK K K+K K KK+++ + K
Sbjct: 202 KEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 29.8 bits (67), Expect = 1.4
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEK-----KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
KK+ K+ KK K K K ++ + + K KKEK KK ++ +++
Sbjct: 311 KKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVSKEE 370
Query: 258 KKKKKKEKKK 267
K K
Sbjct: 371 AAAIKAAGKA 380
Score = 27.8 bits (62), Expect = 7.0
Identities = 14/70 (20%), Positives = 27/70 (38%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+ K+ K+ + K + ++ + K K++K KK+K+ K+E
Sbjct: 311 KKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVSKEE 370
Query: 238 KKKKKKEKKK 247
K K
Sbjct: 371 AAAIKAAGKA 380
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 29.6 bits (67), Expect = 1.5
Identities = 20/98 (20%), Positives = 52/98 (53%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
KE+ + R + ++ + EE +E K+ ++ E+ + E ++E K+E KK +
Sbjct: 31 SIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEA 90
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+K + + ++++E+ +E+ ++ ++ K + +EG
Sbjct: 91 SSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGY 128
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 29.6 bits (67), Expect = 1.5
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ RR + ++ + ++ EE + E K EE++ +E + K +K KK+
Sbjct: 16 KRRRRGLQFIEKGKFSQQAEELRREAKLEEEEARISEEAQNAGLKSATDLAEKIPKKELP 75
Query: 237 E 237
+
Sbjct: 76 D 76
Score = 27.7 bits (62), Expect = 6.2
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK RR+ + K K ++ EE E K E+++ + E+ + K +K KK+
Sbjct: 15 KKRRRRGLQFIEKGKFSQQAEELRREAKLEEEEARISEEAQNAGLKSATDLAEKIPKKEL 74
Query: 237 EK 238
Sbjct: 75 PD 76
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 29.6 bits (67), Expect = 1.5
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+++K+K+K K + +EE+ E++ +++KK K+ + E KKK K
Sbjct: 1 KKKKKKKKSKLSFGDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSF 60
Query: 244 EKKKKKEEKKKEKKKKKKK---KEKKKKKDE 271
K +EEK+ E +++ ++ K+++ K+E
Sbjct: 61 LPDKAREEKEAELREELREEFLKKQEAVKEE 91
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 29.6 bits (67), Expect = 1.5
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE-----KKKKKKE 244
+K+K+ +EE+ KE ++ +K +K KK KE K K+K +KK KK+ +
Sbjct: 234 KKKKQTKEERIATAKEGREDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRG 293
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKK 268
K+K+ K++ + ++KK
Sbjct: 294 KQKRSLRDKQKVLRAHILRQKKGG 317
Score = 28.9 bits (65), Expect = 3.1
Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE-------- 244
K+ E E+++E+ + KK ++ +++ E+ +E+ ++++ + +K+K E
Sbjct: 125 KEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATTRILT 184
Query: 245 ----KKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K ++ +K K K K++ KD R
Sbjct: 185 PADFAKIQELRLEKGVDKALGGKLKRRDKDAPER 218
Score = 28.1 bits (63), Expect = 4.9
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 188 RKRKRKKEE------EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK----KKKKKKKE 237
+K+K+ KEE E +E+ +K +K KK ++ K KEK ++K KK+ +
Sbjct: 234 KKKKQTKEERIATAKEGREDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRG 293
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKK 261
K+K+ K+K ++KK
Sbjct: 294 KQKRSLRDKQKVLRAHILRQKKGG 317
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 30.0 bits (66), Expect = 1.5
Identities = 27/92 (29%), Positives = 60/92 (65%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E++K +++ K +++ ++ ++E ++ + + KK+ +++E K+ K ++++ +K
Sbjct: 72 KSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQK 131
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
E++KK+ + KK + EKKKEK K +K EK +K
Sbjct: 132 EQEKKEADLKKLQAEKKKEKAVKAEKAEKAEK 163
Score = 29.3 bits (64), Expect = 2.8
Identities = 27/107 (25%), Positives = 66/107 (61%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
+LE + + E+ K+ +K+ +K+ ++ E E++ +K EK+ + + + KK +E
Sbjct: 57 SLELTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQE 116
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++ K+ K ++++ +K+++KK+ + KK + +KKK+K K +K ++ +
Sbjct: 117 EEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEK 163
Score = 27.3 bits (59), Expect = 9.8
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+++ ++ K R+ E E K+ +EE+ K+ K E+++ +K++EKK+ KK + +K+
Sbjct: 89 EQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKK 148
Query: 238 KKKKKKEKKKKKEEKKKE 255
K+K K +K +K EK K+
Sbjct: 149 KEKAVKAEKAEKAEKTKK 166
>gnl|CDD|217010 pfam02387, IncFII_repA, IncFII RepA protein family. This protein
is plasmid encoded and found to be essential for plasmid
replication.
Length = 279
Score = 29.6 bits (67), Expect = 1.5
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
EE+ +K++ + E KK KKK + +++ KE ++ + + + +K+++
Sbjct: 165 EEKLNSARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRR 224
Query: 260 KKKKEKKKKKD 270
+K K +KD
Sbjct: 225 ARKLAKLDEKD 235
Score = 29.6 bits (67), Expect = 1.6
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKK--KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+EK +K++ + E KK KKK E +++ KE ++ + ++K KK ++
Sbjct: 165 EEKLNSARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRR 224
Query: 267 KKKDEGRRR 275
+K
Sbjct: 225 ARKLAKLDE 233
Score = 29.2 bits (66), Expect = 2.0
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
RKQ+ +K KK+ + ++ ++ ++ + E+K KK+++ +K K
Sbjct: 172 RKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRRARKLAKL 231
Query: 241 KKKEKKKK 248
+K+ +KK
Sbjct: 232 DEKDIRKK 239
Score = 28.9 bits (65), Expect = 2.6
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EE+ +K++ + E KK KKK + +++ K+ E+ + ++K +K++
Sbjct: 164 SEEKLNSARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRR 223
Query: 255 EKKKKKKKKEKKKKK 269
+K K EK +K
Sbjct: 224 RARKLAKLDEKDIRK 238
Score = 28.1 bits (63), Expect = 5.0
Identities = 17/81 (20%), Positives = 40/81 (49%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++++ E E ++ KK+ E ++ K+ ++ + ++K KK+++ +K K
Sbjct: 172 RKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRRARKLAKL 231
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
++K +KK K+ K E
Sbjct: 232 DEKDIRKKILNALVKEYSKGE 252
Score = 28.1 bits (63), Expect = 5.5
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
RK++ E E K+ +KK + +++ K+ ++ + ++K KK+++ K
Sbjct: 169 NSARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRRARKL 228
Query: 247 KKKEEKKKEKKKKK 260
K +EK KK
Sbjct: 229 AKLDEKDIRKKILN 242
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 28.0 bits (63), Expect = 1.5
Identities = 14/44 (31%), Positives = 35/44 (79%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
RK++ EE E+ ++E +++ K++E++KEK+K+ ++ +KK ++++
Sbjct: 45 RKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 26.1 bits (58), Expect = 8.0
Identities = 14/49 (28%), Positives = 42/49 (85%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K+EE+++E+ +E +K +++ ++++++++E+K+K+K+ E+++KK E+++
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 25.7 bits (57), Expect = 9.6
Identities = 14/46 (30%), Positives = 31/46 (67%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
++ER++Q K + + E E KE E+++EK+K +E++K+ +++
Sbjct: 42 EEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 29.6 bits (66), Expect = 1.6
Identities = 22/89 (24%), Positives = 49/89 (55%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
R++R+ +++R ++EEE E + EK+K KKK+ +K + + + ++E+
Sbjct: 193 REKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESS 252
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ + + + E+ K + +K+K KK +K
Sbjct: 253 ESESDEDEDEDNKGKIRKRKTDDAKKSRK 281
Score = 28.9 bits (64), Expect = 3.3
Identities = 21/89 (23%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK--KKEKKKKKKKKKEKKK 240
+R +++ K + EEE+E + + E + +++K +KK EK ++ + + +E++
Sbjct: 192 EREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEES 251
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ E + ++E K K +K+K + KK +
Sbjct: 252 SESESDEDEDEDNKGKIRKRKTDDAKKSR 280
>gnl|CDD|223945 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit
[Energy production and conversion].
Length = 294
Score = 29.6 bits (67), Expect = 1.6
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 166 GDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEE-EKKEEKKKEKKKEKKKEKKKKEK 224
G N + K + + K EEEK + ++ + +E+ K
Sbjct: 210 GRNTMKTIEEAKLAVETGYWPLYRYEPGKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLT 269
Query: 225 KKEKKKKKKKKKEKKKKKKEKKK 247
K + +K +K+ ++ +E K+
Sbjct: 270 KSNPELIQKLQKDVDERWEELKR 292
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 29.2 bits (66), Expect = 1.6
Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 12/105 (11%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK--KKKEKKKEKKKKKKK 234
K E RK++ + + E EEKE+ K K E K K EK KK K+KEK+KKK K
Sbjct: 100 KLEARKKKLEELDEDKAAEIEEKEKWTKALAKAEGVKVKDDEKLLKKALKRKEKQKKKSK 159
Query: 235 KKEKKKKKKEKKKKKE----------EKKKEKKKKKKKKEKKKKK 269
K+ K++K+K +KKK E ++K +KK KKKKK KKK +
Sbjct: 160 KEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGR 204
Score = 28.0 bits (63), Expect = 3.7
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+R+RKR++ + K++++KE KKKE ++ + E+ K E+ K KKK + + K
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSKV 69
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKD 270
+ + ++ +K K KKK+KKKK D
Sbjct: 70 EFADGEQAKKDLKLKKKKKKKKTD 93
Score = 28.0 bits (63), Expect = 4.1
Identities = 24/58 (41%), Positives = 46/58 (79%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K++EK+K+K K++ KE+K+K +KK+ +++KK+++ KK+K +KK KK++K K+K +
Sbjct: 149 KRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 28.0 bits (63), Expect = 4.8
Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK----- 231
++ RRK+ +RK ++K+K++E +K+E+ ++ + +E K E+ K KKK + +
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSK 68
Query: 232 -KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ E+ KK + KKKK++KK + K+ KK E +KKK E
Sbjct: 69 VEFADGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELD 112
>gnl|CDD|151608 pfam11166, DUF2951, Protein of unknown function (DUF2951). This
family of proteins has no known function. It has a
highly conserved sequence.
Length = 97
Score = 28.2 bits (63), Expect = 1.6
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+R +RR +R + K E +E K+ + ++ +K + +E++ K+ K
Sbjct: 2 ESYQRETERRIQRLEENDKTIFESLDEIKDGQHTQELVNQKMDLTLDSINRERELDKENK 61
Query: 236 KEKKKKKKEKK 246
+E +K K+ K
Sbjct: 62 EENRKNIKDVK 72
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 28.9 bits (65), Expect = 1.6
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
KK K KKK K EK ++K K++ + EK++ ++GR
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGR 62
Score = 26.6 bits (59), Expect = 8.0
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K K++ + K+ K KKK K +K +KK K++ + EK++ +K + K
Sbjct: 13 KLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 26.6 bits (59), Expect = 9.4
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ KK + KKK K +K +K+ K++ + +K++ EK + K
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKP 65
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 172
Score = 29.0 bits (65), Expect = 1.6
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EE EE+++ E+ KE+ KEKK EKK KE ++ + + K++ + + + + +
Sbjct: 93 EEALDEEKERREESKEEMKEKKFEKKLKELRRAVRSSEYTNKKEGRVHEHEFGPETNGVE 152
Query: 255 EKKKKK 260
E ++
Sbjct: 153 EDTYRR 158
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional.
Length = 643
Score = 29.8 bits (67), Expect = 1.6
Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 5/130 (3%)
Query: 142 LPSCGCSRTARPKDLKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEE 201
L G T L R D G K +++RR+R+ E +
Sbjct: 14 LAKRGLDTTGLKAALVRRLDDAIAEDAKTASKSGTKSSAGRKKRRERQDDGDDEPVSPKR 73
Query: 202 EKKEEKKKEKKKEKKKEKKKKE-----KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+E K +E ++ ++ +KK+ ++ E K E++K++
Sbjct: 74 IAIDEVKGMTVRELREAASERGLATTGRKKDLLERLCAALESDVKVGSANGTGEDEKEKG 133
Query: 257 KKKKKKKEKK 266
++++KE+K
Sbjct: 134 GDEEREKEEK 143
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 29.8 bits (68), Expect = 1.6
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
EE E K +K K + KK ++ +KKK
Sbjct: 327 EENPVEASKIVEKVLLAAKARAAAKKARELTRKKKLSSIS 366
Score = 29.1 bits (66), Expect = 2.6
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 208 KKEKKKEKKK-EKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+E E K +K K + KK ++ +KKK
Sbjct: 326 LEENPVEASKIVEKVLLAAKARAAAKKARELTRKKKLSSIS 366
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 29.6 bits (67), Expect = 1.6
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ + + +E E+ KE+ + + K K + KKEKK +K ++
Sbjct: 73 DYEPDLYREYIMERFKERGTGKGRPVPKPKFEFKKEKKVIEKLPFCER 120
Score = 28.8 bits (65), Expect = 2.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+ E + E E+ KE+ K + K + + KK+KK +K E+
Sbjct: 73 DYEPDLYREYIMERFKERGTGKGRPVPKPKFEFKKEKKVIEKLPFCER 120
Score = 28.8 bits (65), Expect = 3.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
E+ KE+ K + K K + +K+KK EK
Sbjct: 83 IMERFKERGTGKGRPVPKPKFEFKKEKKVIEK 114
Score = 27.6 bits (62), Expect = 6.4
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K E + E E+ KE+ K + K + + +K+KK +K
Sbjct: 72 KDYEPDLYREYIMERFKERGTGKGRPVPKPKFEFKKEKKVIEK 114
Score = 27.3 bits (61), Expect = 8.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
E+ K++ K + K K + KK+KK +K
Sbjct: 83 IMERFKERGTGKGRPVPKPKFEFKKEKKVIEK 114
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 28.7 bits (64), Expect = 1.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ EK KKKKKK +K KK K+ KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 2.4
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ EK KK+KKK KK KK KK KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 2.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ EK K+KKKK KK +K KK KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 2.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKE 250
K KKKKKK KK KK +K KK+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 3.2
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKE 227
E E+ KK+KKK KK +K KK KK+
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.5 bits (61), Expect = 4.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKK 262
E +K K+KKKK ++ KK KK KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.2 bits (60), Expect = 4.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 236 KEKKKKKKEKKKKKEEKKKEKK 257
K KKKKKK KK KK +K +K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.2 bits (60), Expect = 5.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKK 230
E +K KKK+KK +K KK KK KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.2 bits (60), Expect = 5.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKK 243
E +K KKK+KK KK KK +K KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 26.8 bits (59), Expect = 6.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEE 251
K KKKKK+ KK KK KK K++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 26.8 bits (59), Expect = 7.4
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKK 254
K KK+KKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 26.8 bits (59), Expect = 8.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 234 KKKEKKKKKKEKKKKKEEKKKE 255
K K+KKKK K+ KK K+ KK+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 28.8 bits (65), Expect = 1.7
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK------KKKKKKKKEKKKKK 242
E + E + ++ +K++E++KE+K+KE + ++ KK ++ K +K+
Sbjct: 10 NASIPDPAELQSEIDEYMEEYDKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKES 69
Query: 243 KEKKKKKEEKKKEKKKKKK 261
K ++EKKK+KKK+ K
Sbjct: 70 VAAKAAEKEKKKKKKKELK 88
Score = 27.2 bits (61), Expect = 4.6
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 177 KKERRKQRRRKRKRKRKKEEEE--KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
+ ++ ++ ++ K K + +E+ KK + K +KE K +++KK+KKKK+ K
Sbjct: 29 EYDKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKELK 88
Query: 235 ------KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+E K+ + + +KK E+ K++ K K K
Sbjct: 89 NFYRFQIRESKRNELAELRKKFEEDKKRIALLKAARKFK 127
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 29.4 bits (66), Expect = 1.7
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 5/87 (5%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEE-----KKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
K+RR+Q R+ K R+ + E K K E + + KK+
Sbjct: 76 KKRRRQSSRRTKGHRQLLTLVRITEILASGADASGVKAATGAGKVEVAAEAAPAKAKKEA 135
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K + K
Sbjct: 136 APKAAPAPAAAAAPPAAAAAGADDLTK 162
>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 775
Score = 30.0 bits (68), Expect = 1.7
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
L+ + KKE + + + K+ +E+ EK + +E +E+ K KKE ++ K
Sbjct: 189 KRLKKALELLKKELELLKLQNKITKKVEEKMEKTQ--REYYLREQLKAIKKELGIEKDDK 246
Query: 227 EKKKKKKKKKEKKKKKKEKKKK-KEEKKK 254
++ +K K+K E+ K +E KK ++E K
Sbjct: 247 DELEKLKEKLEELKLPEEVKKVIEKELTK 275
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is a
small protein module with a triple-stranded beta-sheet
fold. This is a family of WW domain binding proteins.
Length = 78
Score = 27.6 bits (62), Expect = 1.7
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+K++KKKE KK K +++ ++E K KK +++ + K ++E K +K+K K+
Sbjct: 9 AYRKEQKKKELKKNKAERQARREAKLAKKNPDRLQRELDKLKAQEESGKLRPVEKQKLKK 68
Query: 265 KKK 267
+K
Sbjct: 69 LEK 71
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 28.5 bits (64), Expect = 1.7
Identities = 23/97 (23%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K + ++K+ + E +E + K E + +K+E++ E++K +K+++K+ E K
Sbjct: 28 KAAKEEKKQAKLSERKENRKPKYIGSLLEAAERRKREREIAEERKLQKEREKEGDEFADK 87
Query: 242 KK----EKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+K KK+ EE +K ++++K+++E +++ D +
Sbjct: 88 EKFVTSAYKKQLEENRKLEEEEKEREELEEENDVTKG 124
Score = 27.0 bits (60), Expect = 5.8
Identities = 20/89 (22%), Positives = 49/89 (55%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K +++ ++ + E ++E E EE+K +K++EK+ ++ ++K KK
Sbjct: 38 KLSERKENRKPKYIGSLLEAAERRKREREIAEERKLQKEREKEGDEFADKEKFVTSAYKK 97
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ +E +K ++E+K+++E +++ K K
Sbjct: 98 QLEENRKLEEEEKEREELEEENDVTKGKD 126
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 29.5 bits (66), Expect = 1.7
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+EK+KKK + KE+KK KE+K K+ E
Sbjct: 93 REKEKKKSRTKEEKKALKEEKDKEAEPYM 121
>gnl|CDD|150406 pfam09727, CortBP2, Cortactin-binding protein-2. This entry is the
first approximately 250 residues of cortactin-binding
protein 2. In addition to being a positional candidate
for autism this protein is expressed at highest levels
in the brain in humans. The human protein has six
associated ankyrin repeat domains pfam00023 towards the
C-terminus which act as protein-protein interaction
domains.
Length = 193
Score = 29.1 bits (65), Expect = 1.8
Identities = 19/71 (26%), Positives = 42/71 (59%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
++++K E EEEK++ + KK + ++E+++ KK +++K ++ KK++E +K
Sbjct: 110 KRQRKTVLELEEEKRKHIRYMKKSDDFTNLLEQERERLKKLLEQEKSQQAKKEQEHRKLL 169
Query: 250 EEKKKEKKKKK 260
++E K K
Sbjct: 170 ATLEEELGKLK 180
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 29.4 bits (66), Expect = 1.8
Identities = 13/41 (31%), Positives = 29/41 (70%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K+ K K ++ ++ ++K++KK E+ +E+ KK +K ++ KK
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKK 54
Score = 29.0 bits (65), Expect = 2.5
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K EK+ + K ++ + + K++KK ++ +++ KK +K ++ KK
Sbjct: 11 KLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKS 55
Score = 28.6 bits (64), Expect = 3.4
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
EK+ K K ++ ++ + K+++K ++ +E+ KK EK +E KK
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKS 55
Score = 28.6 bits (64), Expect = 4.0
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K +K+ + K ++ ++ + K+EKK ++ +++ KK +K E+ KK
Sbjct: 11 KLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKS 55
Score = 28.2 bits (63), Expect = 4.4
Identities = 11/41 (26%), Positives = 27/41 (65%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
EK+ + K ++ ++ K++KK ++ +++ KK +K ++ KK
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKK 54
Score = 27.8 bits (62), Expect = 7.0
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EK+ + K ++ ++ + K++KK +E +++ K+ +K EE KK
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKK 54
Score = 27.4 bits (61), Expect = 7.2
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
E++ + K ++ ++ + K++KK E+ +E+ KK +K E+ KK
Sbjct: 13 AEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKS 55
>gnl|CDD|234635 PRK00104, scpA, segregation and condensation protein A; Reviewed.
Length = 242
Score = 29.4 bits (67), Expect = 1.8
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 18/97 (18%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK-----KKKEKKK 247
K EE E+EEE ++ EK E KK K+ E+ KE+++++ + K E +
Sbjct: 76 KVEEFEEEEEDPRQELLEKLIEYKKFKEAAEELKEQEEERAQYFSKPPSDLEEFDAELDE 135
Query: 248 KKEEKKK-------------EKKKKKKKKEKKKKKDE 271
+ + E+KK K + K ++DE
Sbjct: 136 DELDGDVTLLDLFLAFSKLMERKKANKPRHTKIERDE 172
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 29.4 bits (66), Expect = 1.8
Identities = 18/68 (26%), Positives = 22/68 (32%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ + K + K + K K E KK KK K K KK
Sbjct: 141 AAAAQAAAAPKAPAKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKK 200
Query: 255 EKKKKKKK 262
KKKK K
Sbjct: 201 TTKKKKTK 208
Score = 28.6 bits (64), Expect = 2.7
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ K K + K + K K + KK K K + +K KK
Sbjct: 143 AAQAAAAPKAPAKPRAKSPRPAAKAAPKPTETITAKKAK-KTAAAPKPTADKTATPAKKT 201
Query: 265 KKKKKDEG 272
KKKK +
Sbjct: 202 TKKKKTKA 209
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 30.0 bits (67), Expect = 1.8
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 160 WLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKE--KKK 217
+L+G + EY K + R + ++E + E +K+ E +KE K
Sbjct: 427 FLFGEDDETPEYLTLQDKAPDFLDKTISSHRSKFRDETREHELNARKKRVEHQKELLDKI 486
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++ E+ + E+K +K+ + ++
Sbjct: 487 IEEGLERFRNASDAGPDSIEEKSEKRIESYSRD 519
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 28.0 bits (63), Expect = 1.8
Identities = 12/32 (37%), Positives = 25/32 (78%)
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K++K++EK +++EE K+ K K+++ E+K +K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEK 32
Score = 27.2 bits (61), Expect = 3.3
Identities = 11/32 (34%), Positives = 25/32 (78%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K++K++EK ++++E K+ K K++E ++K +K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEK 32
Score = 26.8 bits (60), Expect = 5.3
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+E+KEE+K ++++E K+ K K ++ E+K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 26.5 bits (59), Expect = 6.8
Identities = 13/35 (37%), Positives = 27/35 (77%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+++KE++K ++++E K+ K K+E+ ++K EK KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 26.5 bits (59), Expect = 7.6
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
KE +E+E+ ++EE+ K K K++E ++K +K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEK 32
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 27.7 bits (62), Expect = 1.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
K E KKKKKKKKK+ + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 26.9 bits (60), Expect = 3.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K E KK+KKKKK++ + K KK + EG
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEG 54
Score = 26.9 bits (60), Expect = 3.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K E KKKK+KKK+K + + KK E +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 26.6 bits (59), Expect = 4.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K + + K+KKKKKKKK E + KK E E
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 26.2 bits (58), Expect = 7.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K E KKK+KKKK+K ++ K KK + E E
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG 60
Score = 26.2 bits (58), Expect = 7.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K E KKKKK+KKKK ++ + KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 29.4 bits (66), Expect = 1.9
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
+ R+ R+K + KKE E+ +E K+K+KKK+KKK+ K
Sbjct: 61 RYCRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 28.7 bits (64), Expect = 3.2
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
E+KK + KK+ + +E K+KKKKK +KKK K
Sbjct: 67 ERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 27.5 bits (61), Expect = 6.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
+Q RK+ + K+E E +E K++KKK+ KK+K K
Sbjct: 63 CRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 27.5 bits (61), Expect = 7.3
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
++ ++KK + KK+ + +E K+K+KKK KKKK K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 27.5 bits (61), Expect = 7.6
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
R+ +RK+ + +KE E +E K++KKK+ KKK+ K
Sbjct: 63 CRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 27.1 bits (60), Expect = 8.5
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
E+K+ + KK+ + +E K++KKKK KKKK K
Sbjct: 67 ERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 29.6 bits (66), Expect = 1.9
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K +K+ + K K + ++ ++KKK K K K + K +K+
Sbjct: 5 KSRKRSGNNQNKNASVVNNKAEIAAMIDARRLEQKKKGGVTNSKGKTNKVVDAKLEKE 62
>gnl|CDD|147845 pfam05914, RIB43A, RIB43A. This family consists of several
RIB43A-like eukaryotic proteins. Ciliary and flagellar
microtubules contain a specialised set of
protofilaments, termed ribbons, that are composed of
tubulin and several associated proteins. RIB43A was
first characterized in the unicellular biflagellate,
Chlamydomonas reinhardtii although highly related
sequences are present in several higher eukaryotes
including humans. The function of this protein is
unknown although the structure of RIB43A and its
association with the specialised protofilament ribbons
and with basal bodies is relevant to the proposed role
of ribbons in forming and stabilising doublet and
triplet microtubules and in organising their
three-dimensional structure. Human RIB43A homologues
could represent a structural requirement in centriole
replication in dividing cells.
Length = 379
Score = 29.6 bits (67), Expect = 1.9
Identities = 19/91 (20%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK----EKKKEKKKKEK 224
+ +KG E+ R+ ++++ +++E +EEE+ EK+ +++ +++E+
Sbjct: 270 IPDRWKGMSPEQLAAIRKGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQER 329
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ K+ +K+ ++ KE+K ++E KE
Sbjct: 330 RLRKELRKQLDSANQQLAKEQKAQQEYLNKE 360
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 29.8 bits (67), Expect = 1.9
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
EKE ++ +E++++ +KEKK K K+ ++ + KK+K
Sbjct: 988 EKENQEYDERERQARKEKKLAKNATPSKRPSGRQANESPSSLKKRK 1033
Score = 28.2 bits (63), Expect = 6.2
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E ++E++ EE +E + K E K+EK + K+ KK+KK+E +K +++ +
Sbjct: 33 EVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQEIQKILEQQNAAIDADMN 92
Query: 255 EKKKKKKK 262
K K + K
Sbjct: 93 NKGKGRLK 100
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 29.6 bits (67), Expect = 1.9
Identities = 15/87 (17%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK-----KEKKKKK 242
+ + ++ E E E+ ++E ++ E++ E+ ++ + E + E+ +++++ E+++
Sbjct: 473 DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETI 532
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+EK+++ EE ++ + + + E+K++
Sbjct: 533 EEKRERAEELRERAAELEAEAEEKREA 559
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell surface
and is extremely large (although apparently lacking in
repeat structure) and is important for the process of
invasion of the RBCs by the parasite. These proteins are
found in P. falciparum, P. vivax and P. yoelii.
Length = 2757
Score = 30.0 bits (67), Expect = 1.9
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK-----------EKKKEKKKKKKKKKE 237
K K + K+E K K EK KE ++ KK K + K KK +
Sbjct: 1489 KEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIKNKFAKTKKDSEI 1548
Query: 238 KKKKKKEKKKK--KEEKKKEKKKKKKKKEKKKKKDE 271
K+ K+ KK E +K E+K K+ KKEK + +D+
Sbjct: 1549 IIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDD 1584
>gnl|CDD|220839 pfam10661, EssA, WXG100 protein secretion system (Wss), protein
EssA. The WXG100 protein secretion system (Wss) is
responsible for the secretion of WXG100 proteins
(pfam06013) such as ESAT-6 and CFP-10 in Mycobacterium
tuberculosis or EsxA and EsxB in Staphylococcus aureus.
In S. aureus, the Wss seems to be encoded by a locus of
eight CDS, called ess (eSAT-6 secretion system). This
locus encodes, amongst several other proteins, EssA, a
protein predicted to possess one transmembrane domain.
Due to its predicted membrane location and its absolute
requirement for WXG100 protein secretion, it has been
speculated that EssA could form a secretion apparatus in
conjunction with the polytopic membrane protein EsaA,
YukC (pfam10140) and YukAB, which is a membrane-bound
ATPase containing Ftsk/SpoIIIE domains (pfam01580)
called EssC in S. aureus and Snm1/Snm2 in Mycobacterium
tuberculosis. Proteins homologous to EssA, YukC, EsaA
and YukD seem absent from mycobacteria.
Length = 145
Score = 28.7 bits (64), Expect = 1.9
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKE---KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
++ +EK ++K +E + +K E + E++ KKK E+K+ + + E K+
Sbjct: 23 QKTDQEKNEKKLRETELDKLGIELFTTETEEEINKKKNAEQKEMEDIENSLFSEDKEGNV 82
Query: 258 KKKKKKEK 265
K+ K+
Sbjct: 83 AVKETKDS 90
>gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit. Most
phenylalanyl-tRNA synthetases are heterodimeric, with 2
alpha (pheS) and 2 beta (pheT) subunits. This model
describes the alpha subunit, which shows some similarity
to class II aminoacyl-tRNA ligases. Mitochondrial
phenylalanyl-tRNA synthetase is a single polypeptide
chain, active as a monomer, and similar to this chain
rather than to the beta chain, but excluded from this
model. An interesting feature of the alignment of all
sequences captured by this model is a deep split between
non-spirochete bacterial examples and all other
examples; supporting this split is a relative deletion
of about 50 residues in the former set between two
motifs well conserved throughout the alignment [Protein
synthesis, tRNA aminoacylation].
Length = 293
Score = 29.2 bits (66), Expect = 1.9
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK-KKEKKKKKEEKKKEKKKKKKKKEK 265
K K+ K+ K K++ K E K + + E K K E + K K E
Sbjct: 1 KLKDLLKQLGKLTKEETKPALGALINEVKIELQDELTKLKPELESAGLWSKLKFET 56
Score = 28.4 bits (64), Expect = 4.1
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K K+ K+ K K++ K + K E + + + K + E K K +
Sbjct: 1 KLKDLLKQLGKLTKEETKPALGALINEVKIELQDELTKLKPELESAGLWSKLKFET 56
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 28.4 bits (64), Expect = 2.0
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
EK+ E+ +E+ +E +E+KK EK E++KKK++K+E ++++K
Sbjct: 72 EKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQKL 114
Score = 28.0 bits (63), Expect = 2.5
Identities = 15/42 (35%), Positives = 32/42 (76%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
EK+ E+ E+ +E +E+KK +K E++K+K++K++ ++E+K
Sbjct: 72 EKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQK 113
Score = 28.0 bits (63), Expect = 2.7
Identities = 14/38 (36%), Positives = 29/38 (76%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK 216
E+ +++ ++ ++RKK E+ E EKK+E+K+E ++E+K
Sbjct: 76 EQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQK 113
Score = 26.8 bits (60), Expect = 6.6
Identities = 12/52 (23%), Positives = 39/52 (75%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+++++ ++ +K+ ++ ++ ++ +++KK EK ++++KK++KEE ++E+K
Sbjct: 62 AQQQQELEQAEKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQK 113
Score = 26.5 bits (59), Expect = 7.6
Identities = 12/42 (28%), Positives = 33/42 (78%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+K+ E+ +E+ ++ ++++K +K E++KKKE+K++ ++++K
Sbjct: 72 EKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQK 113
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 28.4 bits (64), Expect = 2.0
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK 219
R + +R R +E++ EEE K + ++ K++E++K+K
Sbjct: 91 ERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 28.0 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 26/32 (81%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
+R ++EE+K +E++ +++ E+ KE+++EKKK
Sbjct: 95 AQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 27.2 bits (61), Expect = 5.3
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
E E + + EEKK ++++ K++ ++ KE+++EKKK
Sbjct: 91 ERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 26.5 bits (59), Expect = 9.2
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK 215
+ R + +R R ++K +EEE + + +E K++E++K+K
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|222346 pfam13728, TraF, F plasmid transfer operon protein. TraF protein
undergoes proteolytic processing associated with export.
The 19 amino acids at the amino terminus of the
polypeptides appear to constitute a typical membrane
leader peptide - not included in this family, while the
remainder of the molecule is predicted to be primarily
hydrophilic in character. F plasmid TraF and TraH are
required for F pilus assembly and F plasmid transfer,
and they are both localised to the outer membrane in the
presence of the complete F transfer region, especially
TraV, the putative anchor.
Length = 215
Score = 29.1 bits (66), Expect = 2.1
Identities = 4/41 (9%), Positives = 14/41 (34%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
E + K+ +K + ++ ++ ++ K
Sbjct: 6 NEPPEPKEPEKAPAPAAPAQSPSATEQMAWLREYLEEALAK 46
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 28.3 bits (64), Expect = 2.1
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
KE + +EE ++ + +KK + K++ K EKK E+ K + + KKE
Sbjct: 60 GKELKLTDEEIQKALQAFQKKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
Score = 27.2 bits (61), Expect = 5.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
EE +K + +KK + K++ K EKK ++ K + + KK+
Sbjct: 68 EEIQKALQAFQKKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 29.6 bits (67), Expect = 2.1
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ K KEK+ KEKKKEKK+KK +
Sbjct: 373 DECGNKYKEKEAKEKKKEKKRKKTWAR 399
Score = 28.0 bits (63), Expect = 5.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+ K K+KE K+KK+EKK++K +
Sbjct: 373 DECGNKYKEKEAKEKKKEKKRKKTWAR 399
Score = 27.6 bits (62), Expect = 7.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKK 232
++ K KEK+ ++KKKEKK++K +
Sbjct: 373 DECGNKYKEKEAKEKKKEKKRKKTWAR 399
Score = 27.6 bits (62), Expect = 7.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 247 KKKEEKKKEKKKKKKKKEKKKKK 269
+ K KEK+ K+KKKEKK+KK
Sbjct: 373 DECGNKYKEKEAKEKKKEKKRKK 395
>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor. The ribosome recycling
factor (RRF / ribosome release factor) dissociates the
ribosome from the mRNA after termination of translation,
and is essential bacterial growth. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis.
Length = 165
Score = 28.6 bits (65), Expect = 2.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ KK +K KE +++ K+ +K+ +K K KK + KKKEK
Sbjct: 118 NDKLKKLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEK 162
Score = 28.2 bits (64), Expect = 2.7
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 15/75 (20%)
Query: 205 EEKKKEKKKEKKK--EKKK-----------KEKKKEKKKKKKKKKEKKKKKKE--KKKKK 249
EE++KE K+ KK E+ K + KK +K K+ + E K+ +KE K K
Sbjct: 89 EERRKELVKQAKKLAEEAKVAIRNIRRDANDKLKKLEKDKEISEDEVKRAEKEIQKLTDK 148
Query: 250 EEKKKEKKKKKKKKE 264
KK ++ KKK+KE
Sbjct: 149 YIKKIDELLKKKEKE 163
Score = 27.1 bits (61), Expect = 7.2
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 185 RRKRKRKRKKEEEEKE----EEKKEEKKKEK---KKEKKKEKKKKEKKKE 227
RR K KK E++KE E K+ EK+ +K K KK ++ K+K+KE
Sbjct: 114 RRDANDKLKKLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEKE 163
>gnl|CDD|215645 PLN03246, PLN03246, 26S proteasome regulatory subunit; Provisional.
Length = 303
Score = 29.3 bits (66), Expect = 2.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKK 216
K +E EK E+ K K KK K
Sbjct: 278 KILNKEHEKAEDAKPAAKPAKKGSGK 303
Score = 29.3 bits (66), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKK 220
KE EK E+ K K KK K
Sbjct: 282 KEHEKAEDAKPAAKPAKKGSGK 303
>gnl|CDD|217483 pfam03305, Lipoprotein_X, Mycoplasma MG185/MG260 protein. Most of
the aligned regions in this family are found towards the
middle of the member proteins.
Length = 237
Score = 28.9 bits (65), Expect = 2.2
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKK---KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
++ K K +K K K + + K K+ K + + + K
Sbjct: 153 KDLKAPTKNNQKGGALGSVTSKGNANLLGKFTLDKNSLTSPEVKAFKEADKSEDPQTDSK 212
Query: 253 KKEKKKKKKKKEKKKKKD 270
E K K +K D
Sbjct: 213 TIELYKDKIPTDKNAGVD 230
Score = 27.8 bits (62), Expect = 5.7
Identities = 11/56 (19%), Positives = 17/56 (30%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K+ K K +K K K ++ + K KE K +D
Sbjct: 153 KDLKAPTKNNQKGGALGSVTSKGNANLLGKFTLDKNSLTSPEVKAFKEADKSEDPQ 208
>gnl|CDD|234961 PRK01581, speE, spermidine synthase; Validated.
Length = 374
Score = 29.2 bits (65), Expect = 2.2
Identities = 14/68 (20%), Positives = 33/68 (48%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+K+ K K + KK+K+ E K + +++ + K+ K+ K+ K+ + + K+
Sbjct: 5 RKQSKIKIYRITSYKKDKRSELDSNKFELEQQLVENKQDKQGKQYKQDRGIQYAETKQDN 64
Query: 267 KKKDEGRR 274
+ + E
Sbjct: 65 QVQSENVV 72
Score = 27.6 bits (61), Expect = 8.0
Identities = 13/63 (20%), Positives = 34/63 (53%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ RK+ K + + K++K+ E K + +++ + K+ K+ K+ K+++ + E K+
Sbjct: 3 KHRKQSKIKIYRITSYKKDKRSELDSNKFELEQQLVENKQDKQGKQYKQDRGIQYAETKQ 62
Query: 248 KKE 250
+
Sbjct: 63 DNQ 65
>gnl|CDD|219248 pfam06978, POP1, Ribonucleases P/MRP protein subunit POP1. This
family represents a conserved region approximately 150
residues long located towards the N-terminus of the POP1
subunit that is common to both the RNase MRP and RNase P
ribonucleoproteins (EC:3.1.26.5). These RNA-containing
enzymes generate mature tRNA molecules by cleaving their
5' ends.
Length = 158
Score = 28.4 bits (64), Expect = 2.2
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 181 RKQRRR------KR--KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
R RRR KR KR RK+ + E ++ K KK K+ + + +K
Sbjct: 33 RHLRRRTASHNVKRVPKRLRKRAKREMAKDNTPTKLSRKKPSKRLLRLALARPPNLSRKY 92
Query: 233 KKKKEKKK 240
+K++++KK
Sbjct: 93 RKRQKRKK 100
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 28.9 bits (65), Expect = 2.3
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKK-KEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+EEE+ +EEKKEE K+ K+ K + + K +K K + ++ KKK
Sbjct: 113 EEEEDIDEEKKEESAKKSTPPIKEMKIPAAGESRLKIRKDYVPSGNKPRAEKPKKK 168
Score = 28.2 bits (63), Expect = 4.2
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+EEE+ EE++++ +EKK+E KK K+ K E + K ++ K + +K
Sbjct: 106 EEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIPAAGESRLKIRKDYVPSGNKPRAEKP 165
Query: 259 KKK 261
KKK
Sbjct: 166 KKK 168
>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated.
Length = 141
Score = 28.5 bits (64), Expect = 2.3
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
R K + E+ + + + E + E + ++E K ++K K KE+ +KK E K
Sbjct: 38 NRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAK 97
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDE 271
K + E K E K+ +K++ K++
Sbjct: 98 KAELESKYEAFAKQLANQKQELKEQ 122
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 29.6 bits (66), Expect = 2.3
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE+ + R + K + E +E K E + + K + KE + K K + K +
Sbjct: 216 KEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALK 275
Query: 238 KKKKKKEKKKKKEEKKKEK 256
+KK+ EK + E K EK
Sbjct: 276 SRKKQMEKDNSELELKMEK 294
Score = 28.9 bits (64), Expect = 4.3
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KER KQ + R KK E KKE +K++++ K K+ ++ + + + +E
Sbjct: 420 KERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQE 479
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+K ++E K ++ E KK+ K + +K D
Sbjct: 480 LRKAERELSKAEKNSLTETLKKEVKSLQNEKAD 512
>gnl|CDD|221324 pfam11933, DUF3451, Domain of unknown function (DUF3451). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 199 to 238 amino acids in length. This domain is
found associated with pfam06512, pfam00520. This domain
has a conserved ADD sequence motif.
Length = 222
Score = 29.0 bits (65), Expect = 2.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEK 203
KERR + + +K + EE + EK
Sbjct: 12 KERRNRNDKNKKEEHSIGSEEGDSEK 37
Score = 27.1 bits (60), Expect = 9.6
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
K+RR + + +K+E EE EK+ + + +++ + +K +K
Sbjct: 12 KERRNRNDKNKKEEHSIGSEEGDSEKEPKSESADGRKRCRFLLRKTRK 59
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 29.5 bits (66), Expect = 2.3
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKK 241
+KKK+KKK K+KKKKK +E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.5 bits (66), Expect = 2.4
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKE 250
+KKKKKKK ++KKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.5 bits (66), Expect = 2.5
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKK 254
+KKKK+KK K+K+KKK +E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.7 bits (64), Expect = 3.7
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKK 248
++KKKKKK K++KKKK +E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.9 bits (62), Expect = 7.3
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 246 KKKKEEKKKEKKKKKKKKEKKKK 268
+KKK++KK ++KKKKK +E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.5 bits (61), Expect = 8.7
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKE 255
+KKK+KKK K++KKKK E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 28.4 bits (63), Expect = 2.3
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
KE +E K+ K+ K + +K +KKKKEK EKK K KKK+EK K
Sbjct: 2 KETSYEEALAKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 28.0 bits (63), Expect = 2.3
Identities = 11/54 (20%), Positives = 33/54 (61%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ E++ + ++K+++ E++++ KE + K + K EKK++K + + + ++
Sbjct: 61 DAGLRAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 28.0 bits (63), Expect = 2.4
Identities = 12/50 (24%), Positives = 31/50 (62%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ E + K ++KE++ ++++E K+ + K K EKK++K + + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 27.6 bits (62), Expect = 3.2
Identities = 11/54 (20%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 205 EEKKKEKKKEKKKEKKKK--EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ + +++ K +EK+++ E+++E K+ + K K +KK++K + + + ++
Sbjct: 61 DAGLRAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 26.8 bits (60), Expect = 6.9
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
R +R+ K + K ++ E ++E K+ + K + K +KK++K E + E ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 26.8 bits (60), Expect = 7.0
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ E + K EEK++E + +++ K+ + K K EKK++K + + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 26.5 bits (59), Expect = 8.6
Identities = 10/50 (20%), Positives = 29/50 (58%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
R +++ + +++++ E E+E ++ + K K EKK+ K + + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 26.1 bits (58), Expect = 9.6
Identities = 11/52 (21%), Positives = 29/52 (55%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
R ++ + +KE+E E E++ ++ + K K EKK+++ + + + ++
Sbjct: 63 GLRAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 28.6 bits (64), Expect = 2.4
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 19/114 (16%)
Query: 180 RRKQRRRKRKR-KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
R KQ+ +R +RK+E EE E+E+ + ++ +K + K+E + K E
Sbjct: 31 RWKQQAIHERREQRKQEIEELEKERIMNDRLLERVDKLLSELKEESLDSSQAVMKSLNEN 90
Query: 239 KKKKKEK------------------KKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K+ K + +EK ++ +K + K K E +
Sbjct: 91 FTDKENVEPEQPTYNEMVEDLFDQVKDEVDEKNGAALIEELQKHRDKLKKEQKE 144
Score = 27.1 bits (60), Expect = 8.7
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
KE E E+ E ++ + K E +K ++ +K + + KK++KE KK +E +
Sbjct: 94 KENVEPEQPTYNEMVEDLFDQVKDEVDEKNGAALIEELQKHRDKLKKEQKELLKKLDELE 153
Query: 254 KEKKKK 259
KE+KKK
Sbjct: 154 KEEKKK 159
>gnl|CDD|226465 COG3956, COG3956, Protein containing tetrapyrrole methyltransferase
domain and MazG-like (predicted pyrophosphatase) domain
[General function prediction only].
Length = 488
Score = 29.4 bits (66), Expect = 2.4
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K E+ E + E+ + KK EK + E KK K +K +KK K +
Sbjct: 330 KDEQVEDSTDVLEKWDEIKKAEKDLQSYTSELKKIPKILPALILAEKLQKKAAKVGFDWA 389
Query: 253 KKEKKKKKKKKEKKKKKD 270
E+ K +E ++ K+
Sbjct: 390 NVEEAWDKVLEEMREVKE 407
>gnl|CDD|233421 TIGR01453, grpIintron_endo, group I intron endonuclease. This
model represents one subfamily of endonucleases
containing the endo/excinuclease amino terminal domain,
pfam01541 at its amino end. A distinct subfamily
includes excinuclease abc subunit c (uvrC). Members of
pfam01541 are often termed GIY-YIG endonucleases after
conserved motifs near the amino end. This subfamily in
This model is found in open reading frames of group I
introns in both phage and mitochondria. The closely
related endonucleases of phage T4: segA, segB, segC,
segD and segE, score below the trusted cutoff for the
family.
Length = 214
Score = 28.9 bits (65), Expect = 2.4
Identities = 21/78 (26%), Positives = 30/78 (38%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K EE K + K K+ K ++ K K K K + KK ++ KK+
Sbjct: 98 KHSEETKAKMSKLFSGKKNNPWYGKTHSEETKAKISKNKLGENNPFFGKKHSEETKKKIS 157
Query: 253 KKEKKKKKKKKEKKKKKD 270
+KEK KK K
Sbjct: 158 EKEKGAKKVNVYDKNNGL 175
Score = 28.1 bits (63), Expect = 3.7
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E K + K K+ K ++ K K K K E KK ++ KKK ++
Sbjct: 102 ETKAKMSKLFSGKKNNPWYGKTHSEETKAKISKNKLGENNPFFGKKHSEETKKKISEK 159
>gnl|CDD|224586 COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 359
Score = 29.4 bits (66), Expect = 2.4
Identities = 19/77 (24%), Positives = 30/77 (38%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ ++ + EE E E K KK+ + K +E + + K K + K
Sbjct: 256 NLSLIKDLEEYLGKLLEEAARELLSELSKLKKRIGRWWYKLEEIDIVESELKLFKIEVKW 315
Query: 245 KKKKKEEKKKEKKKKKK 261
K KKE K+ KK
Sbjct: 316 KDLKKEAKEVLFLLKKN 332
Score = 28.6 bits (64), Expect = 3.6
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEE-------EEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
G++ER K + K + E K E+ K E+ +E
Sbjct: 221 FLGEEEREKPLTEEEKELYYIYDGGFPFWLREVGPNLSLIKDLEEYLGKLLEEAARELLS 280
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E K KK+ K +E + E K K + K K KK+ K
Sbjct: 281 ELSKLKKRIGRWWYKLEEIDIVESELKLFKIEVKWKDLKKEAK 323
Score = 27.8 bits (62), Expect = 5.9
Identities = 18/91 (19%), Positives = 32/91 (35%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ + K EE E E K +K+ + K ++ E + K K +
Sbjct: 254 GPNLSLIKDLEEYLGKLLEEAARELLSELSKLKKRIGRWWYKLEEIDIVESELKLFKIEV 313
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K K K++ K+ K+ E K +
Sbjct: 314 KWKDLKKEAKEVLFLLKKNILFLNPIEGKPQ 344
>gnl|CDD|130057 TIGR00984, 3a0801s03tim44, mitochondrial import inner membrane,
translocase subunit. The mitochondrial protein
translocase (MPT) family, which brings nuclearly encoded
preproteins into mitochondria, is very complex with 19
currently identified protein constituents.These proteins
include several chaperone proteins, four proteins of the
outer membrane translocase (Tom) import receptor, five
proteins of the Tom channel complex, five proteins of
the inner membrane translocase (Tim) and three "motor"
proteins. This family is specific for the Tim proteins
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 378
Score = 29.1 bits (65), Expect = 2.4
Identities = 19/78 (24%), Positives = 31/78 (39%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
D+ YG+ K++RR+ R ++ + + + E E K E K
Sbjct: 121 DSSRYGFIADKEQRRRPRELTKRTDGRDFAKSRVVEANESVTDVVLHSDSSWYSKVEDFK 180
Query: 227 EKKKKKKKKKEKKKKKKE 244
E +K +E KKK E
Sbjct: 181 ESNVVYRKIQELKKKYDE 198
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 28.8 bits (65), Expect = 2.4
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
KK++ +KEEE K+ KKK + K E +KK K +K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHKIDK 158
Score = 28.0 bits (63), Expect = 3.9
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
KKKK KKE++ KK +KK + K E +KK K +K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHKIDK 158
Score = 28.0 bits (63), Expect = 4.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KKK+ KKE++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 27.6 bits (62), Expect = 6.4
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K KKKK KK+E+ KK KKK E K E +KK
Sbjct: 114 AKHYGIDLGKKKKYKKEEENKKAKKKSESLVAKLEVRKK 152
Score = 27.6 bits (62), Expect = 6.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
KKK+ KKE++ +K KK+ + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 26.9 bits (60), Expect = 9.1
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
KKK KK+E+ KK KKK + K + KK K +K
Sbjct: 124 KKKYKKEEENKKAKKKSESLVAKLEVRKKNHKIDK 158
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 27.2 bits (61), Expect = 2.5
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KK K+ EK + K+ K K+ KK +KKK K K+ +K KE + E+ + + K+E KK
Sbjct: 4 KKRKRNEKLRAKRAK--KRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKK 61
Query: 268 KKD 270
K +
Sbjct: 62 KGN 64
>gnl|CDD|226096 COG3566, COG3566, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 379
Score = 29.1 bits (65), Expect = 2.5
Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 1/97 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E RR EE + + E K +K EK + K +
Sbjct: 181 GEAPITTRRIGVDGISLSLEETKASEVEHLSASLKTATEKVDAL-EKDLHAAQAKLDSGQ 239
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K++ KK E K + + +D
Sbjct: 240 ALTKEELDAKKAELSKALAALEAANAADEDPQDRDAA 276
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 29.5 bits (67), Expect = 2.5
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
KE KK + K + + E + +K++ EK + +K EEK++E
Sbjct: 827 KEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEEL 879
Score = 27.6 bits (62), Expect = 8.1
Identities = 11/56 (19%), Positives = 27/56 (48%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+R ++ K+ + K E + + + EK++ +K E +K ++K++E
Sbjct: 824 ERYKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEEL 879
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 29.3 bits (66), Expect = 2.5
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ ++ ++K+E KK+KKKK KK K
Sbjct: 330 STETPPPASLSHSPPAAFERPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 28.5 bits (64), Expect = 4.7
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
E ++ K+K+E K++KKKK KK
Sbjct: 332 ETPPPASLSHSPPAAFERPLALSPKRKREGDKKQKKKKSKKL 373
Score = 28.1 bits (63), Expect = 5.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 230 KKKKKKKEKKKKKKEKKKK 248
K+K++ +K+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 29.4 bits (66), Expect = 2.5
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K K+++++EEK EE K E+ E+ +E++K + +K + KK
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 29.0 bits (65), Expect = 3.1
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
KE +EK+EEK EEK +E K E+ E+ ++E+K + +K + KK
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 28.3 bits (63), Expect = 6.0
Identities = 14/49 (28%), Positives = 31/49 (63%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
K KE++E+++E+K E+ K ++ +++ E+++K E +K + KK
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 27.9 bits (62), Expect = 8.0
Identities = 12/33 (36%), Positives = 26/33 (78%)
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K+ KEKK++K+E+K E+ K ++ E+ +++++G
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKG 309
>gnl|CDD|221643 pfam12572, DUF3752, Protein of unknown function (DUF3752). This
domain family is found in eukaryotes, and is typically
between 140 and 163 amino acids in length.
Length = 148
Score = 28.5 bits (64), Expect = 2.5
Identities = 17/93 (18%), Positives = 47/93 (50%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K +R + + + K +K+ +K ++ EKK+ + E+ +KK+KKK
Sbjct: 42 KAKRLQDEVLGVEAGASAPAAASAKASKRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKK 101
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K+++ + ++ +++K+ K + ++++
Sbjct: 102 KKEEENDDPSRRPFDREKDLAVGGKISKAQRRE 134
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 29.1 bits (65), Expect = 2.6
Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKK-KEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ +K + R R E+ E + +KKE ++ + + + + KK
Sbjct: 462 IESAKKYVKPSRHRFVPFEKAVIMEADSANRSSAPRKKELVEQWPEYSDEDKIRSLLKKL 521
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKK----KKEKKKKKDE 271
+ + K+ + +E + + K + E K+ ++
Sbjct: 522 RAIEALKERMRSGEELEVIQVNKIETEEEVLSELKELVED 561
>gnl|CDD|233309 TIGR01200, GLPGLI, GLPGLI family protein. This protein family was
first noted as a paralogous set in Porphyromonas
gingivalis, but it is more widely distributed among the
Bacteroidetes. The protein family is now renamed GLPGLI
after its best-conserved motif.
Length = 227
Score = 28.9 bits (65), Expect = 2.6
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
E+ KK + K + K KK KK ++K K+ K+K
Sbjct: 182 EDGKKHYTFKAIKIELNPTPIIIIPKPKKGKKISREKFKKIKEKYY 227
Score = 28.5 bits (64), Expect = 2.9
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K E K KK K+ +EK KK K+K
Sbjct: 193 IKIELNPTPIIIIPKPKKGKKISREKFKKIKEKYY 227
Score = 27.3 bits (61), Expect = 7.9
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K K + + KK K+ +++ KK K+K
Sbjct: 191 KAIKIELNPTPIIIIPKPKKGKKISREKFKKIKEKYY 227
>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein. This
family of proteins represents the complementary sex
determiner in the honeybee. In the honeybee, the
mechanism of sex determination depends on the csd gene
which produces an SR-type protein. Males are homozygous
while females are homozygous for the csd gene.
Heterozygosity generates an active protein which
initiates female development.
Length = 146
Score = 28.1 bits (62), Expect = 2.7
Identities = 10/45 (22%), Positives = 28/45 (62%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
R++ R R++E++ + E + +E +E+ +++ ++E+ +E K
Sbjct: 3 RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHK 47
Score = 27.8 bits (61), Expect = 3.9
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
RK+ R R+R++K + E + E +E+ +++ + ++ +E K
Sbjct: 3 RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHK 47
>gnl|CDD|206687 cd01900, YchF, YchF GTPase. YchF is a member of the Obg family,
which includes four other subfamilies of GTPases: Obg,
DRG, Ygr210, and NOG1. Obg is an essential gene that is
involved in DNA replication in C. crescentus and
Streptomyces griseus and is associated with the
ribosome. Several members of the family, including YchF,
possess the TGS domain related to the RNA-binding
proteins. Experimental data and genomic analysis suggest
that YchF may be part of a nucleoprotein complex and may
function as a GTP-dependent translational factor.
Length = 274
Score = 29.0 bits (66), Expect = 2.8
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE------- 250
EK E+ E+K K KE K+E + EK KE ++ K + + +E K K
Sbjct: 137 EKRLERLEKKAKSGDKEAKEELELLEKIKEHLEEGKPARTLELTDEEIKILKSLQLLTAK 196
Query: 251 ---------EKKKEKKKKKKKKEKKKKKDEG 272
E + K K ++ EG
Sbjct: 197 PVIYVANVSEDDLIRGNNKVLKVREIAAKEG 227
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 27.9 bits (62), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKE 237
KK KK ++ EKK +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
>gnl|CDD|202558 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. This family
aligns residues towards the N-terminus of several
proteins with multiple functions. The members of this
family all appear to possess 5'-3' exonuclease activity
EC:3.1.11.-. Thus, the aligned region may be necessary
for 5' to 3' exonuclease function. The family also
contains several Xrn1 and Xrn2 proteins. The 5'-3'
exoribonucleases Xrn1p and Xrn2p/Rat1p function in the
degradation and processing of several classes of RNA in
Saccharomyces cerevisiae. Xrn1p is the main enzyme
catalyzing cytoplasmic mRNA degradation in multiple
decay pathways, whereas Xrn2p/Rat1p functions in the
processing of rRNAs and small nucleolar RNAs (snoRNAs)
in the nucleus.
Length = 237
Score = 28.8 bits (65), Expect = 2.8
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
K +++ RR + + K++E E EE +EE + E K +K +K+K
Sbjct: 92 KMNQQRSRRFRAAKDAKEKEAEA-EENREELETEGIKLPEKVEKEK 136
Score = 27.7 bits (62), Expect = 5.6
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 180 RRKQ-RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
R K ++R R+ + K+ +EKE E EE ++E + E K +K EK+K
Sbjct: 90 RAKMNQQRSRRFRAAKDAKEKEAE-AEENREELETEGIKLPEKVEKEK 136
Score = 27.3 bits (61), Expect = 8.7
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K+ K+KE + E+ +++ + + K +K +K+K
Sbjct: 105 KDAKEKEAEAEENREELETEGIKLPEKVEKEK 136
>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated.
Length = 650
Score = 29.0 bits (66), Expect = 2.9
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 198 EKEEEKKEEKKKEKKK-EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE- 255
++E+E + +E + + +K KK+ + K KK E K ++ K+ E KKK+
Sbjct: 177 DREKEIRAFVPEEYWTIDAEFKKGKKKFEASFYGYKGKKIELKNEEDVKEILAELKKKDF 236
Query: 256 KKKKKKKKEKKKKK 269
K K KKKE+K+
Sbjct: 237 KVSKVKKKERKRNP 250
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 28.9 bits (65), Expect = 2.9
Identities = 9/65 (13%), Positives = 23/65 (35%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+ +E + K E + + +K+ K+ K K + +K ++ +
Sbjct: 89 RKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLARKTNLTPEQAARIA 148
Query: 261 KKKEK 265
+ K
Sbjct: 149 ELLLK 153
Score = 28.9 bits (65), Expect = 3.0
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K + + K E K + +++ K+ K K +
Sbjct: 89 RKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLA 134
Score = 28.9 bits (65), Expect = 3.2
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ E + K + K + K KE K K + +K
Sbjct: 89 RKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLARKTN 138
Score = 28.9 bits (65), Expect = 3.8
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+K + + K++ K + +K+ KE K K +K E+ +
Sbjct: 89 RKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLARKTNLTPEQAAR 146
Score = 28.1 bits (63), Expect = 5.1
Identities = 10/65 (15%), Positives = 23/65 (35%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ +E E K E + + +K+ K+ K K + ++ E+ +
Sbjct: 89 RKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLARKTNLTPEQAARIA 148
Query: 257 KKKKK 261
+ K
Sbjct: 149 ELLLK 153
Score = 27.8 bits (62), Expect = 8.3
Identities = 11/65 (16%), Positives = 20/65 (30%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
K ++ E K++ K + K+ K+ K K K E+
Sbjct: 89 RKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLARKTNLTPEQAARIA 148
Query: 258 KKKKK 262
+ K
Sbjct: 149 ELLLK 153
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 28.1 bits (63), Expect = 2.9
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K KK +KK +K + KK K +K+K + + + K KK + ++ K KK
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKK 59
Score = 28.1 bits (63), Expect = 2.9
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K KK +KK +K K KK K KK+K + + + K + +K K ++ K +K
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKK 59
Score = 27.0 bits (60), Expect = 6.6
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K KK KKK +K + KK K K++K + + + + + KK K ++ K K
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKK 59
>gnl|CDD|225995 COG3464, COG3464, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 402
Score = 29.0 bits (65), Expect = 2.9
Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 11/108 (10%)
Query: 171 YGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKK-----------EEKKKEKKKEKKKEK 219
Y + ++ RR+ R + R ++ + K + ++
Sbjct: 239 YISRALEQVRRRVRNQFRSEDKRIKALWKRRARLSSRYLCDKNFQNLSLLRYERLSPILG 298
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ + +E ++ + KK + E K KE +
Sbjct: 299 ELYSLYPALRVAYDLAQELAADRRREAVKKLIQWIEDAVKSAIKELAR 346
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 27.8 bits (62), Expect = 3.0
Identities = 21/79 (26%), Positives = 47/79 (59%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K + +R KR ++ + +E+E K+EK+ E+++ + K+++ K+EK++ +K
Sbjct: 23 PKSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMA 82
Query: 236 KEKKKKKKEKKKKKEEKKK 254
+ KK E+ K++E++ K
Sbjct: 83 AKMHAKKVERLKRREKRNK 101
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 27.7 bits (62), Expect = 3.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 194 KEEEEKEEEKKEEKKKE 210
E K+EEKKEE+++E
Sbjct: 77 AAAEAKKEEKKEEEEEE 93
>gnl|CDD|147685 pfam05663, DUF809, Protein of unknown function (DUF809). This
family consists of several proteins of unknown function
Raphanus sativus (Radish) and Brassica napus (Rape).
Length = 138
Score = 28.2 bits (62), Expect = 3.1
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K E + KE+KKE K E + KE+KKE K + + K+EKK+ + +K
Sbjct: 94 KGEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGPRK 138
Score = 27.8 bits (61), Expect = 3.2
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
+EEK+E K E + KE+KKE K E + KE+KKE + +K
Sbjct: 100 KEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGPRK 138
Score = 27.1 bits (59), Expect = 6.1
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K E + KE+KKE K + + K+EKK+ K E + K+E+K+ E +K
Sbjct: 94 KGEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGPRK 138
Score = 27.1 bits (59), Expect = 6.7
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
K E E +EEKKE K + + KE+KKE K + + KE+KK+ + K
Sbjct: 94 KGEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGPRK 138
Score = 26.7 bits (58), Expect = 8.1
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+YG+ G K + K+ + E E KEEKK+ K + + KE+KK+ K + +
Sbjct: 65 FQYGWLGVKITIKSNVPNDEVTKKVSPIIKGEIEGKEEKKEGKGEIEGKEEKKEGKGEIE 124
Query: 229 KKKKKKKKEKKKKK 242
K++KK+ E +K
Sbjct: 125 GKEEKKEVENGPRK 138
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 29.2 bits (65), Expect = 3.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K + E K+KK KKKK KKK+ + +
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQ 141
Score = 28.8 bits (64), Expect = 3.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E K+KK +KKK KKKE K + +++ +EK
Sbjct: 119 ESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
Score = 28.4 bits (63), Expect = 4.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
E K+KK +KKK KKKE K + +++ ++K
Sbjct: 119 ESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
Score = 28.4 bits (63), Expect = 5.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
K KK KKKK KKK+ K + E++ E+K
Sbjct: 122 KDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
Score = 28.0 bits (62), Expect = 6.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K + + K+KK KKK+ KKKE K + +++ +EK
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 29.1 bits (65), Expect = 3.1
Identities = 10/63 (15%), Positives = 32/63 (50%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ E E+K ++K + +K + ++ K+ + K + +++++ +K K + K+ +
Sbjct: 365 QAEIEQKLAQEKAQLDAAVEKGELTPEQAKQIARAKLEPEERERLEKIDKAQAALKQAQS 424
Query: 253 KKE 255
+
Sbjct: 425 AFD 427
>gnl|CDD|192718 pfam11176, DUF2962, Protein of unknown function (DUF2962). This
eukaryotic family of proteins has no known function.
Length = 155
Score = 28.0 bits (63), Expect = 3.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K K KKKK K +K K+ + +++K ++KK ++ +K
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEK 43
Score = 28.0 bits (63), Expect = 3.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K K KKKK K +K K+ + + +K +KKK + +K+ E R
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLELDR 50
Score = 28.0 bits (63), Expect = 4.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K K KKK+ K +K K+ + + K EKKK ++ +K+ E
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLE 47
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 28.8 bits (64), Expect = 3.2
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+K EE E+++ EK K+ +KEKK EKK KE +++ + + + ++K+K
Sbjct: 205 IKKWGSLEELDREKQRREKMKDDRKEKKLEKKIKELRRKTRTSNYSRMDVREKEK 259
Score = 27.7 bits (61), Expect = 6.9
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
EE +E++++EK K+ +KEKK ++K KE ++K + + +EK+K
Sbjct: 212 EELDREKQRREKMKDDRKEKKLEKKIKELRRKTRTSNYSRMDVREKEK 259
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 28.9 bits (65), Expect = 3.2
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEK--KKKEKKKEKKKKKKKKKEKKKKKKE-----KK 246
+EE E+EEEK EK E + KE K+ K+ ++ + E++ K E +
Sbjct: 247 EEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPEL 306
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGR 273
++ K + K++ + +
Sbjct: 307 PISGLEEAGKIDESKQELVAENYEISP 333
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 28.1 bits (62), Expect = 3.3
Identities = 22/96 (22%), Positives = 75/96 (78%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E+R+Q R +R+++ ++ E++E+++ E ++ +++ +++ ++++E +++++++ ++K+EK
Sbjct: 30 EKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEK 89
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K+K E+++K+E++++E+ +K+K++ + + ++E R
Sbjct: 90 AKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAER 125
Score = 27.4 bits (60), Expect = 7.1
Identities = 21/90 (23%), Positives = 69/90 (76%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
++R+ + ++E+EE+E ++EE+ + +++E K+ ++ ++E++ ++++++ ++K+++
Sbjct: 31 KRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKA 90
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+K EE++K++++++++ +K+K++ E R R
Sbjct: 91 KRKAEEEEKQEQEEQERIQKQKEEAEARAR 120
Score = 27.0 bits (59), Expect = 8.6
Identities = 23/99 (23%), Positives = 69/99 (69%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++E+ +Q R +R+ +++ EE+ ++E +++E+++ ++KE+K K K +E++K++++++
Sbjct: 46 RREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQ 105
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E+ +K+KE+ + + ++ E+ + +++K ++ + E R
Sbjct: 106 ERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLER 144
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 29.0 bits (65), Expect = 3.3
Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 178 KERRKQRRRKRKRKR---KKEEEEKEEEKK---EEKKKEKKKEKKKEKKKKEKKKEKKKK 231
++ + + R RK +E KE E + + K K+ K + E++ +K
Sbjct: 136 EKEADELWKPRGRKPEINVALKELKELEAEIREVQLKTRTWKDLVKALDEAEEELANLRK 195
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ ++ EK+K++ E+ ++ E+K +++
Sbjct: 196 ELRQLEKEKQRLERLRRLLPLLAERKALEQQ 226
Score = 27.8 bits (62), Expect = 8.7
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 189 KRKRKKEEEEKEEE-KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
R + E+E +E K +K E K+ K+ + + +E + K + K+ K E ++
Sbjct: 129 GSVRDELEKEADELWKPRGRKPEINVALKELKELEAEIREVQLKTRTWKDLVKALDEAEE 188
Query: 248 KKEEKKKEKKKKKKKKEKKKK 268
+ +KE ++ +K+K++ ++
Sbjct: 189 ELANLRKELRQLEKEKQRLER 209
>gnl|CDD|218754 pfam05795, Plasmodium_Vir, Plasmodium vivax Vir protein. This
family consists of several Vir proteins specific to
Plasmodium vivax. The vir genes are present at about
600-1,000 copies per haploid genome and encode proteins
that are immunovariant in natural infections, indicating
that they may have a functional role in establishing
chronic infection through antigenic variation.
Length = 348
Score = 28.7 bits (64), Expect = 3.3
Identities = 16/73 (21%), Positives = 30/73 (41%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
++ KE+ E K +KK K K K + KKEK K+ + ++K +
Sbjct: 167 KKYKEKCCSSNDNNYCPEYFKCDKKYNPKNLLSKLSCKNESKKEKSKEGGAAEGDEKLEL 226
Query: 261 KKKEKKKKKDEGR 273
++E + +
Sbjct: 227 LEEESSELETSSS 239
Score = 27.9 bits (62), Expect = 5.4
Identities = 18/72 (25%), Positives = 29/72 (40%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+K ++K + K K K K K K K+ K+K + + K K+ K
Sbjct: 139 DKIKKKIKSKNKNCNKYCKYLKYIKSLYKKYKEKCCSSNDNNYCPEYFKCDKKYNPKNLL 198
Query: 258 KKKKKKEKKKKK 269
K K + KK+
Sbjct: 199 SKLSCKNESKKE 210
Score = 27.9 bits (62), Expect = 6.8
Identities = 15/78 (19%), Positives = 32/78 (41%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
++ KE+ + K +KK K K K + +K+K K+ + +EK +
Sbjct: 167 KKYKEKCCSSNDNNYCPEYFKCDKKYNPKNLLSKLSCKNESKKEKSKEGGAAEGDEKLEL 226
Query: 256 KKKKKKKKEKKKKKDEGR 273
+++ + E + G
Sbjct: 227 LEEESSELETSSSAEGGP 244
Score = 27.5 bits (61), Expect = 8.9
Identities = 16/66 (24%), Positives = 25/66 (37%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K KEK E K KK K K K + +K+K K+ + ++K +
Sbjct: 167 KKYKEKCCSSNDNNYCPEYFKCDKKYNPKNLLSKLSCKNESKKEKSKEGGAAEGDEKLEL 226
Query: 270 DEGRRR 275
E
Sbjct: 227 LEEESS 232
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 28.3 bits (64), Expect = 3.3
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E E++ ++E +K EKKK E+ K++ + + ++ +
Sbjct: 4 DETLEEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTP 48
Score = 28.0 bits (63), Expect = 4.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ E+K +EE++K +KKK E+ K+K
Sbjct: 4 DETLEEKLNEEEREKLEKKKSSLSEEDKEK 33
Score = 27.6 bits (62), Expect = 6.8
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ +++ ++E++K +KKK +E K+K E+ + EE +
Sbjct: 4 DETLEEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTP 48
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 28.9 bits (65), Expect = 3.3
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
R+R R+ ++ KEE K + KKK
Sbjct: 37 RERAADRRGDKSGKEELTIVGKHSTIEGAKKKAHVNGVFL 76
Score = 27.8 bits (62), Expect = 7.4
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+ KR+R + + K+E K + KKK K
Sbjct: 34 ELKRERAADRRGDKSGKEELTIVGKHSTIEGAKKKAHVNGVFLGK 78
>gnl|CDD|145900 pfam02994, Transposase_22, L1 transposable element.
Length = 370
Score = 28.9 bits (64), Expect = 3.4
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+K E+ E + KE + K+ E+ K+ + + +K K+ E KKK +E K+
Sbjct: 53 KKDNYSSLREDIETKGKEVQNFLKELEECITKQVEAHIENTEKCLKELMELKKKARELKE 112
Query: 248 KKEEKKKEKKKKKKKKEKKKKK 269
+ KKE + E +KK+
Sbjct: 113 ECRSIKKEHMETTLDIENQKKR 134
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 28.8 bits (65), Expect = 3.4
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK--EKKKE------KKKKKKKKKEK 238
K + + EE E E+EK EE+ +E++KE E+ K+ K K+ K KK KEK
Sbjct: 5 EKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEK 63
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 28.8 bits (65), Expect = 3.4
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK-KKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ +E + E E ++ K E K K +KEK+ ++++ + E + K+E +
Sbjct: 1 EELDALDEILGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDR 60
Query: 248 KKEEKKK 254
+EE ++
Sbjct: 61 LREEIER 67
Score = 28.0 bits (63), Expect = 5.6
Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+E ++ + + +E + + K K EK+K+ ++++ E + + K+
Sbjct: 1 EELDALDEILGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKR---- 56
Query: 264 EKKKKKDEGRR 274
E + ++E R
Sbjct: 57 EVDRLREEIER 67
>gnl|CDD|223596 COG0522, RpsD, Ribosomal protein S4 and related proteins
[Translation, ribosomal structure and biogenesis].
Length = 205
Score = 28.4 bits (64), Expect = 3.5
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
R +K+ KE KE+K K + +E+ K+ + +EK+K +
Sbjct: 3 RYPGPKKKLSRRLGFNPWLKERLCKERKLPYKPGQHGQERWKKLSDYGLQLREKQKLR 60
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 28.6 bits (64), Expect = 3.5
Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+KE ++ +E + K+K ++ EK +E+ +++K+ K+ KK K K E+
Sbjct: 10 EKEFQQLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIVSLKKLK--KSLTPEDS 67
Query: 253 KKEKKKKKKKKEKK 266
+ ++ +++ KE+K
Sbjct: 68 ELVEQLEEQIKERK 81
>gnl|CDD|222259 pfam13608, Potyvirid-P3, Protein P3 of Potyviral polyprotein. This
is the P3 protein section of the Potyviridae
polyproteins. The function is not known except that the
protein is essential to viral survival.
Length = 445
Score = 28.7 bits (65), Expect = 3.6
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E RK +R + K +KEE+E + K + K +++ + E+K + + ++
Sbjct: 270 NEHRKLKREAAEEKEEKEEKEIRKLYLYSKLEGKLPTEEEFLEYIEEKNPELLETAEELI 329
Query: 238 KKKKKKEKKKKKEEKKKEK 256
++++ + + K +EK EK
Sbjct: 330 EEEEVEHQAKTADEKNLEK 348
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 27.6 bits (62), Expect = 3.6
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K+ KK KK++ +K +K+ KK K+++ KKKE+K K K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 27.2 bits (61), Expect = 5.8
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ KK KKE+ +K +KK K+ K+++ KKK++K+K K K +
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel repeat
in Pneumocystis carinii Major surface glycoprotein (MSG)
some members of the alignment have up to nine repeats of
this family, the repeats containing several conserved
cysteines. The MSG of P. carinii is an important protein
in host-pathogen interactions. Surface glycoprotein A
from Pneumocystis carinii is a main target for the host
immune system, this protein is implicated in the
attachment of Pneumocystis carinii to the host alveolar
epithelial cells, alveolar macrophages, host surfactant
and possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 27.0 bits (60), Expect = 3.7
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ ++ E EE K+K +K ++K K KK+ K E+ K+ K E KKKKK KK KE
Sbjct: 11 ELEEYCEFLEEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKE 70
Query: 251 EKKKEKKKKKK 261
+ K KK+ +
Sbjct: 71 KCTKLKKESNE 81
Score = 26.2 bits (58), Expect = 5.3
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK-KKKKKKKKEKKKKKKEKKKKKEE 251
K + E++ ++ EE + ++ K+K EK KEK K KK K ++ KE K + ++
Sbjct: 1 KDFKLEEKCKELEEYCEFLEEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKK 60
Query: 252 KKKEKKKKKKKKEKKKKK 269
KKK KK K+K K KK+
Sbjct: 61 KKKCKKALKEKCTKLKKE 78
Score = 25.9 bits (57), Expect = 7.7
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K+ + +E+ K+ E+ E +E K+K +K ++K K KK K ++ K+ K E KK
Sbjct: 1 KDFKLEEKCKELEEYCEFLEEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKK 60
Query: 254 KEKKKKKKKKEKKKKKDEG 272
K+K KK K++ K K E
Sbjct: 61 KKKCKKALKEKCTKLKKES 79
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 28.9 bits (65), Expect = 3.7
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
EE + + K + K +K+ E+ +E+ ++ ++++EKK++K
Sbjct: 233 EEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKL 276
Score = 28.5 bits (64), Expect = 4.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
R++ E+ E ++E ++ E+++EKK+ K
Sbjct: 246 RRKLYGEKRAERVREELREVEREREKKRRKLG 277
Score = 28.1 bits (63), Expect = 7.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK 217
R++ K+ E +EE ++ E+++EKK+ K
Sbjct: 246 RRKLYGEKRAERVREELREVEREREKKRRKLG 277
Score = 27.7 bits (62), Expect = 7.7
Identities = 10/45 (22%), Positives = 26/45 (57%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+E + + K + K EK+ E+ +++ ++ E++++KK +K
Sbjct: 233 EEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLG 277
>gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit,
Firmicutes type. AddAB, also called RexAB, substitutes
for RecBCD in several bacterial lineages. These DNA
recombination proteins act before synapse and are
particularly important for DNA repair of double-stranded
breaks by homologous recombination. The term AddAB is
used broadly, with AddA homologous between the
Firmicutes (as modeled here) and the
alphaproteobacteria, while the partner AddB proteins
show no strong homology across the two groups of species
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1230
Score = 28.9 bits (65), Expect = 3.7
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK---------KKEKKK 230
R+ K K + + +E++ + EE K +++ KK+ +K K + ++
Sbjct: 270 RKAVAAFKFKNLKAAKGDEEDADLLEEADKLREEAKKQLEKLKTDYFTRSEEDHLRIMQE 329
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEK 256
K K + K+ ++ +K+EK
Sbjct: 330 MKPVVKTLVQLVKDFIERFGAEKREK 355
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 28.7 bits (64), Expect = 3.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++ + KK KK KK ++ KK KKK KK +KK
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
Score = 27.6 bits (61), Expect = 8.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
++ K KK KK +K ++ KK+KKK KK +KK + ++ +EG
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEG 663
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 28.8 bits (64), Expect = 3.8
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEK-KKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ + +EE E++ + K K + K KE++K ++ + + K +KK+ +EE K
Sbjct: 394 DSSDSDEESGEDEYDQLPPFKPLTKAQMAKLSKEQRKAYLEEYDYRVKLLQKKQWREELK 453
Query: 254 KEKKKKKKKKEKKKKKD 270
+ K KK KE + D
Sbjct: 454 RMKMMKKFGKEIGELPD 470
Score = 28.8 bits (64), Expect = 3.9
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK---EKKKKKKKKKEKKKKKKEKKKKKEE 251
+EE E+E + + + + K KE++K E+ + K +KK+ ++E K+ K
Sbjct: 399 DEESGEDEYDQLPPFKPLTKAQMAKLSKEQRKAYLEEYDYRVKLLQKKQWREELKRMKMM 458
Query: 252 KKKEKKKKKKKKEKKKKKDE 271
KK K+ + ++ DE
Sbjct: 459 KKFGKEIGELPDGYSEEVDE 478
>gnl|CDD|173966 cd08047, TAF7, TATA Binding Protein (TBP) Associated Factor 7
(TAF7) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 7 (TAF7) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryotes. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
preinitiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs are named after their
electrophoretic mobility in polyacrylamide gels in
different species. A new, unified nomenclature has been
suggested for the pol II TAFs to show the relationship
between TAF orthologs and paralogs. Several hypotheses
are proposed for TAFs functions such as serving as
activator-binding sites, core-promoter recognition or a
role in essential catalytic activity. Each TAF, with the
help of a specific activator, is required only for
expression of subset of genes and is not universally
involved for transcription as are GTFs. TAF7 is involved
in the regulation of the transition from PIC assembly to
initiation and elongation. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; the HFD is the interaction motif involved
in heterodimerization of the core histones and their
assembly into nucleosome octamers.
Length = 162
Score = 28.0 bits (63), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
RK+R RK K+ E EE E+E K K++ + + +
Sbjct: 122 RKRRFRKTPSKKIAEIEEVEKEVKRLLKEDTEAVSVEYEVI 162
>gnl|CDD|149453 pfam08397, IMD, IRSp53/MIM homology domain. The N-terminal
predicted helical stretch of the insulin receptor
tyrosine kinase substrate p53 (IRSp53) is an
evolutionary conserved F-actin bundling domain involved
in filopodium formation. The domain has been named IMD
after the IRSp53 and missing in metastasis (MIM)
proteins in which it occurs. Filopodium-inducing IMD
activity is regulated by Cdc42 and Rac1 and is
SH3-independent.
Length = 218
Score = 28.2 bits (63), Expect = 3.8
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+K + +KK K + E KKK+ E +KK+ + KK ++K +K K K
Sbjct: 91 KKTELDKKYANALDKDYQTEYKKKRDELEKKQSDLKKLQRKSQKGKNDSK 140
>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region. This family
contains sequences that are similar to the N-terminal
region of Red protein. This and related proteins contain
a RED repeat which consists of a number of RE and RD
sequence elements. The region in question has several
conserved NLS sequences and a putative trimeric
coiled-coil region, suggesting that these proteins are
expressed in the nucleus. The function of Red protein is
unknown, but efficient sequestration to nuclear bodies
suggests that its expression may be tightly regulated of
that the protein self-aggregates extremely efficiently.
Length = 238
Score = 28.3 bits (63), Expect = 3.8
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KKKKK +K+E+ +KE K + + +++++ K +
Sbjct: 1 KKKKKYAYLRKQEENAEKEINPKYRDRARERRKGINKDYD 40
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. This
domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 27.1 bits (61), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
KK + + +KKKEKK+ K E K+ KK +++K +
Sbjct: 49 KKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKAR 89
Score = 27.1 bits (61), Expect = 4.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+KK++KKE K + K+ KK +++K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 26.7 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
KKK+KK+ K + K+ KK E++K +K
Sbjct: 62 KKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 26.7 bits (60), Expect = 5.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+KKK+KKE K + K KK ++ K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 26.4 bits (59), Expect = 5.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+K+++KKE K E K+ KK +++K + +K
Sbjct: 60 SRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 26.4 bits (59), Expect = 5.7
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K E ++ EE K+ + +K+K+KKE K E K+ KK +++K +K
Sbjct: 36 KAGIEADDIEEMYKKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 28.8 bits (65), Expect = 3.9
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEK 203
R++ +R+R+R+ EE+ E E
Sbjct: 159 ATRERSLERRRRRREWEEKRAELEF 183
Score = 27.6 bits (62), Expect = 7.8
Identities = 9/51 (17%), Positives = 27/51 (52%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+EE EE K E ++ + + ++ ++++++++ E+K+ + E
Sbjct: 133 SDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAELEF 183
Score = 27.6 bits (62), Expect = 8.8
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEE 202
R RR+R+R+ +++ E E
Sbjct: 162 ERSLERRRRRREWEEKRAELEFY 184
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 28.3 bits (63), Expect = 3.9
Identities = 9/72 (12%), Positives = 28/72 (38%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E K + ++ +++ K++++ EK ++ + K K +++ +
Sbjct: 104 AEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREEVHTPVSDISALT 163
Query: 261 KKKEKKKKKDEG 272
+ K K +
Sbjct: 164 VGQALKVKAGQN 175
Score = 27.9 bits (62), Expect = 5.3
Identities = 10/60 (16%), Positives = 31/60 (51%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EEE E +K+ + + + + ++ +++ +K++E +K ++ + K K +++
Sbjct: 92 EEEHVEHARKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 27.9 bits (62), Expect = 5.4
Identities = 9/52 (17%), Positives = 27/52 (51%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
RK+ E + + + ++ E++ +K++E +K ++ + K K +++
Sbjct: 100 RKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 27.5 bits (61), Expect = 6.2
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K+ + K + ++ +++ KK+E+ EK + + K K +E+
Sbjct: 101 KQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 27.5 bits (61), Expect = 6.7
Identities = 11/60 (18%), Positives = 30/60 (50%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
EEE E +++ + K + + + +++ KK+E+ +K ++ + K + ++E
Sbjct: 92 EEEHVEHARKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 27.5 bits (61), Expect = 6.9
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
+ + R Q +R ++ +K+EE EK ++ K + ++E
Sbjct: 105 EAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 27.1 bits (60), Expect = 9.4
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
E+ E +K+ + K + + ++ E++ KK+E+ EK ++ + K K E
Sbjct: 93 EEHVEHARKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREEV 152
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 28.3 bits (64), Expect = 3.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 194 KEEEEKEEEKKEEKKKEKKKE 214
EE+EEE++EE+++E +E
Sbjct: 299 AAAEEEEEEEEEEEEEEPSEE 319
Score = 28.3 bits (64), Expect = 4.6
Identities = 7/33 (21%), Positives = 21/33 (63%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
E +E + + E+++E+++E++++E +E
Sbjct: 287 ELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEE 319
Score = 27.1 bits (61), Expect = 9.1
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 193 KKEEEEKEEEKKEEKKKE 210
+EEEE+EEE++EE+ E
Sbjct: 301 AEEEEEEEEEEEEEEPSE 318
>gnl|CDD|147641 pfam05582, Peptidase_U57, YabG peptidase U57. YabG is a protease
involved in the proteolysis and maturation of SpoIVA and
YrbA proteins, conserved with the cortex and/or coat
assembly by Bacillus subtilis.
Length = 287
Score = 28.3 bits (64), Expect = 3.9
Identities = 9/49 (18%), Positives = 27/49 (55%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
EK + + KK+ ++K + K ++++K ++K++ + + ++E
Sbjct: 51 EKVDASEVTRYKKRFEEKINESLKLIRQDRKLMREKQEYRATRGYNENE 99
Score = 27.5 bits (62), Expect = 8.5
Identities = 8/48 (16%), Positives = 24/48 (50%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
E+ E + KK+ ++K + + ++ +K ++K+E + + +
Sbjct: 51 EKVDASEVTRYKKRFEEKINESLKLIRQDRKLMREKQEYRATRGYNEN 98
>gnl|CDD|153327 cd07643, I-BAR_IMD_MIM, Inverse (I)-BAR, also known as the
IRSp53/MIM homology Domain (IMD), of Missing In
Metastasis. The IMD domain, also called
Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a
dimerization and lipid-binding module that bends
membranes and induces membrane protrusions. Members of
this subfamily include missing in metastasis (MIM) or
metastasis suppressor 1 (MTSS1), metastasis suppressor
1-like (MTSSL) or ABBA (Actin-Bundling protein with
BAIAP2 homology), and similar proteins. They contain an
N-terminal IMD and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus. MIM was originally identified
as a missing transcript from metastatic bladder and
prostate cancer cells. It is a scaffold protein that
functions in a signaling pathway between the PDGF
receptor, Src kinases, and actin assembly. It may also
function as a cofactor of the Sonic hedgehog (Shh)
transcriptional pathway and may participate in tumor
development and progression via this pathway. ABBA
regulates actin and plasma membrane dynamics to promote
the extension of radial glia, which is important in
neuronal migration, axon guidance and neurogenesis. The
IMD domain of MIM binds and bundles actin filaments,
binds membranes, and interacts with the small GTPase
Rac.
Length = 231
Score = 28.2 bits (63), Expect = 3.9
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+EK ++ KK + K KE KK ++E KKK + + +KK +K K
Sbjct: 103 QEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGK 149
Score = 27.0 bits (60), Expect = 9.9
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++K E+ KK + +K K+ KK ++E KKK + +K+ +K K + +
Sbjct: 103 QEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGKGDLQP 154
>gnl|CDD|153283 cd07599, BAR_Rvs167p, The Bin/Amphiphysin/Rvs (BAR) domain of
Saccharomyces cerevisiae Reduced viability upon
starvation protein 167 and similar proteins. BAR
domains are dimerization, lipid binding and curvature
sensing modules found in many different proteins with
diverse functions. This subfamily is composed of fungal
proteins with similarity to Saccharomyces cerevisiae
Reduced viability upon starvation protein 167 (Rvs167p)
and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S.
cerevisiae Rvs167p plays a role in regulation of the
actin cytoskeleton, endocytosis, and sporulation. It
forms a heterodimer with another BAR domain protein
Rvs161p. Rvs161p and Rvs167p share common functions but
are not interchangeable. Their BAR domains cannot be
replaced with each other and the overexpression of one
cannot suppress the mutant phenotypes of the other.
Rvs167p also interacts with the GTPase activating
protein (GAP) Gyp5p, which is involved in ER to Golgi
vesicle trafficking. BAR domains form dimers that bind
to membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 216
Score = 28.4 bits (64), Expect = 4.0
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK----KKKKKKEKKKKK 242
+ +K EE E EE+ KE KK KK +K KK++ KK K + K K +K
Sbjct: 81 EELKKELLEELEFFEERVILPAKELKKYIKKIRKTI-KKRDHKKLDYDKLQNKLNKLLQK 139
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKK 267
K++ K+EK+ K ++K ++ K++
Sbjct: 140 KKELSLKDEKQLAKLERKLEEAKEE 164
Score = 27.6 bits (62), Expect = 6.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+K KK++ KK +K + K K +KKK+ K++K+
Sbjct: 113 RKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQL 151
>gnl|CDD|227520 COG5193, LHP1, La protein, small RNA-binding pol III transcript
stabilizing protein and related La-motif-containing
proteins involved in translation [Posttranslational
modification, protein turnover, chaperones /
Translation, ribosomal structure and biogenesis].
Length = 438
Score = 28.5 bits (63), Expect = 4.0
Identities = 16/80 (20%), Positives = 29/80 (36%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
EE+ K ++ E+ E K KK+ + + K ++ + K +
Sbjct: 31 PTTSEEKSKSQDSNTVIPVEELTESSKSKKEDKNPSKLTSNTKWTLKQVEFYFSGSKDTD 90
Query: 251 EKKKEKKKKKKKKEKKKKKD 270
+ K K K KK+D
Sbjct: 91 SNFPKDKFLKTTAPKNKKRD 110
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 28.6 bits (64), Expect = 4.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEE 202
K+ K R+ KR +KRKK EE+ E +
Sbjct: 24 VKDEAKPRKIKRVKKRKKREEKDELD 49
Score = 27.5 bits (61), Expect = 9.4
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K++ K +K K+ KK+KK+E+K + ++
Sbjct: 24 VKDEAKPRKIKRVKKRKKREEKDELDD 50
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 28.6 bits (64), Expect = 4.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K +K+ KKK K+ + + K++K +K+KK +K+
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPV 162
Score = 28.6 bits (64), Expect = 4.2
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
K EK+ +KK K+ + + K++K++K+K+ KK+
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDL 160
Score = 28.2 bits (63), Expect = 5.0
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
E + K EK+ +KK K+ + + K+++++K+KK KK+
Sbjct: 119 ELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 28.2 bits (63), Expect = 5.3
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K EK+ KKK K+ + + +++K++K+K+ KK+
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQ 158
Score = 27.9 bits (62), Expect = 6.0
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
E + K EK+ +KK ++ + + K++K+ K+KK K++
Sbjct: 119 ELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLP 161
Score = 27.5 bits (61), Expect = 8.3
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K EK+ +KK K+ + + K+++++K+K+ KK++
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
>gnl|CDD|222911 PHA02616, PHA02616, VP2/VP3; Provisional.
Length = 259
Score = 28.5 bits (63), Expect = 4.0
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
EE K+ K + K+K+ + KK KK + K + KK
Sbjct: 193 EELNKDIYKIPTQAVKRKQDELHPVSPTKKAALSKKSKWTGTKSSQSSKK 242
Score = 27.3 bits (60), Expect = 8.4
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+E K K + K+K+ E KK +K K K + KK++ R
Sbjct: 193 EELNKDIYKIPTQAVKRKQDELHPVSPTKKAALSKKSKWTGTKSSQSSKKRRGRSTGRS 251
>gnl|CDD|227463 COG5134, COG5134, Uncharacterized conserved protein [Function
unknown].
Length = 272
Score = 28.5 bits (63), Expect = 4.1
Identities = 14/80 (17%), Positives = 35/80 (43%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++ E + E +K+ +++ +K ++ ++ ++ +K+ +++KK
Sbjct: 126 EKVPESDAIEALEKQLTQQKSEKHNSSAINFIDELNKRLWSDPFVSSQRLRKQFRERKKI 185
Query: 251 EKKKEKKKKKKKKEKKKKKD 270
EKK+E K K D
Sbjct: 186 EKKQEAKDLSLKNRAALDID 205
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR
(FCH and Bin/Amphiphysin/Rvs) domain, a dimerization
module that binds and bends membranes. F-BAR domains
are dimerization modules that bind and bend membranes
and are found in proteins involved in membrane dynamics
and actin reorganization. F-BAR domain containing
proteins, also known as Pombe Cdc15 homology (PCH)
family proteins, include Fes and Fer tyrosine kinases,
PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and
srGAPs. Many members also contain an SH3 domain and play
roles in endocytosis. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
These tubules have diameters larger than those observed
with N-BARs. The F-BAR domains of some members such as
NOSTRIN and Rgd1 are important for the subcellular
localization of the protein.
Length = 191
Score = 28.1 bits (63), Expect = 4.1
Identities = 16/71 (22%), Positives = 39/71 (54%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
EE + E+ EK + +E +K K+ +++ +KK+ E +K KK+ ++ + K+
Sbjct: 64 EETESAATVHEELSEKLSQLIREPLEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAKK 123
Query: 256 KKKKKKKKEKK 266
++ +++ +K
Sbjct: 124 ADEEYREQVEK 134
Score = 27.7 bits (62), Expect = 5.2
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ E E+ KE+K++ +KKE + +K K+K +E K KK +++ +++ +K
Sbjct: 81 SQLIREPLEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAKKADEEYREQVEK 134
>gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated.
Length = 228
Score = 28.3 bits (63), Expect = 4.2
Identities = 12/74 (16%), Positives = 48/74 (64%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E E EEE +++ ++ ++K K+ + ++E++K ++++++ +++ ++ +++ KE
Sbjct: 29 EVEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKE 88
Query: 256 KKKKKKKKEKKKKK 269
+ +++ +K++++
Sbjct: 89 IEAARQQFQKEQQE 102
Score = 27.9 bits (62), Expect = 5.1
Identities = 10/72 (13%), Positives = 48/72 (66%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ EEE +++ +E ++K K+ + ++E++K ++++++ ++++ ++ +++ +E +
Sbjct: 31 EVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIE 90
Query: 254 KEKKKKKKKKEK 265
+++ +K++++
Sbjct: 91 AARQQFQKEQQE 102
>gnl|CDD|225405 COG2849, COG2849, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 230
Score = 28.1 bits (63), Expect = 4.2
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKK---KEKKKEKKKKK----KKKKEKKKKKKEK 245
K + E + ++ ++K K + K+K K + E+
Sbjct: 1 KGDIVETSKNGVDDGVTITYYLNGAIEEKANYVNKLEGKEKLYDEDGKLLSKLDFSAGEE 60
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K KEE K + E KK G
Sbjct: 61 VKSKEEYYDNGTLKGEYLEGKKTPFTG 87
Score = 27.8 bits (62), Expect = 5.4
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 6/95 (6%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK------KEKKKEKKKKKKKKKEKKK 240
K ++K K + K+K K K ++ K K++
Sbjct: 7 TSKNGVDDGVTITYYLNGAIEEKANYVNKLEGKEKLYDEDGKLLSKLDFSAGEEVKSKEE 66
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K E + +K EK + E
Sbjct: 67 YYDNGTLKGEYLEGKKTPFTGIVEKYYENGELEAA 101
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 28.5 bits (63), Expect = 4.2
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK-------KKKKEKKKKKKEKKK 247
EEEE E E+ EE +++ + EK ++E+++E K K + KK K +
Sbjct: 142 EEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLESQTKKPSVKDNGKSFW 201
Query: 248 KKEEKKKEKKKKKKKKEKKKKKDEGR 273
+K +K ++K+K KK G
Sbjct: 202 SAASVFSKKLQKWRQKQKLKKPRSGN 227
>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 106
Score = 27.2 bits (61), Expect = 4.3
Identities = 15/46 (32%), Positives = 31/46 (67%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ KEE ++E E+++E +++ K +K+ +K EK+ E+ K++ K
Sbjct: 57 KQDKEEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEELYKL 102
Score = 26.0 bits (58), Expect = 9.5
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K+ +++ +EE EE K+ +K+ K EK+ EK +KE ++ K++ K
Sbjct: 57 KQDKEEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEELYKL 102
>gnl|CDD|223068 PHA03384, PHA03384, early DNA-binding protein E2A; Provisional.
Length = 445
Score = 28.5 bits (64), Expect = 4.4
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE--KKKEKKKKKKKKKEKKKKK 242
+K+ R+R EE+EEE++ E + + K+ + K++K EKK
Sbjct: 27 PKKKGRRRVSPVEEEEEEEEAEVVAVGFSYPPVRISRGKDGKRPVRPLKEEKDSEKKAST 86
Query: 243 KEKKKKKEEKKKEKK 257
+ + E K
Sbjct: 87 EAAVRNPLSDPLESK 101
>gnl|CDD|192488 pfam10228, DUF2228, Uncharacterized conserved protein (DUF2228).
This is a family of conserved proteins of approximately
700 residues found from worms to humans.
Length = 253
Score = 28.2 bits (63), Expect = 4.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 218 EKKKKEKKKEKKKK---KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
KK KE +KKK KK ++ + KE E+K K K++KKK
Sbjct: 93 TKKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKK 140
Score = 28.2 bits (63), Expect = 4.5
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K+ K+ KKKK KK ++ + KE ++K K K++KKK
Sbjct: 94 KKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKK 140
Score = 28.2 bits (63), Expect = 4.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
KK ++ KKKK K+ ++ E K+ ++K K K+++KK
Sbjct: 94 KKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKK 140
Score = 27.8 bits (62), Expect = 5.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K+ K+ KK+K KK +E + ++ E+K + K++KKK
Sbjct: 94 KKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKK 140
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 27.3 bits (61), Expect = 4.4
Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 189 KRKRKKEEEEKEE--EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K E+EE + E +E+ E++K+++++K+K+E +K +++ K
Sbjct: 53 DGKYDDEDEEADRIYESIDERMDERRKKRREQKEKEEIEKYREENPK 99
Score = 27.3 bits (61), Expect = 5.5
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK 215
R +RK+++E++EKEE +K ++ K +++
Sbjct: 72 ERMDERRKKRREQKEKEEIEKYREENPKIQQQ 103
>gnl|CDD|225437 COG2882, FliJ, Flagellar biosynthesis chaperone [Cell motility and
secretion / Intracellular trafficking and secretion /
Posttranslational modification, protein turnover,
chaperones].
Length = 148
Score = 27.7 bits (62), Expect = 4.4
Identities = 14/52 (26%), Positives = 32/52 (61%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+++ + + K+ E+K E +EK+ E K +K KE++K + ++ ++E+K
Sbjct: 82 QQQSQLSKLRKQVEQKREIWQEKQIELKALEKLKERQKTEFLLEENRREQKI 133
Score = 27.3 bits (61), Expect = 5.7
Identities = 15/52 (28%), Positives = 33/52 (63%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+++ + + K+ E+K+E +EK+ E K EK KE++K + +E ++++K
Sbjct: 82 QQQSQLSKLRKQVEQKREIWQEKQIELKALEKLKERQKTEFLLEENRREQKI 133
>gnl|CDD|153366 cd07682, F-BAR_srGAP2, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Protein 2. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs. srGAP2 is expressed in zones
of neuronal differentiation. It plays a role in the
regeneration of neurons and axons. srGAP2 contains an
N-terminal F-BAR domain, a Rho GAP domain, and a
C-terminal SH3 domain. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 263
Score = 28.1 bits (62), Expect = 4.4
Identities = 16/73 (21%), Positives = 38/73 (52%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K + +++ +++ R +E+++ + + + E+K ++ KK EK K+K++ K
Sbjct: 155 KLKEAEKQEEKQMSRSVRQEDRQTPRSPDSTTNIRIEEKHVRRSSVKKIEKMKEKRQAKY 214
Query: 238 KKKKKKEKKKKKE 250
+ K K K + E
Sbjct: 215 TENKLKAIKARNE 227
Score = 27.7 bits (61), Expect = 5.8
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 195 EEEEKEEEKKEEKKKEK--KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ + KE EK+EEK+ + ++E ++ + + + ++K + KK EK K+K +
Sbjct: 153 QSKLKEAEKQEEKQMSRSVRQEDRQTPRSPDSTTNIRIEEKHVRRSSVKKIEKMKEKRQA 212
Query: 253 KKEKKKKKKKKEKKK 267
K + K K K + +
Sbjct: 213 KYTENKLKAIKARNE 227
Score = 27.7 bits (61), Expect = 7.0
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 191 KRKKEEEEKEEEKKEEK--KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ K +E EK+EEK+ + ++E ++ + + E+K ++ +K +K KEK++
Sbjct: 153 QSKLKEAEKQEEKQMSRSVRQEDRQTPRSPDSTTNIRIEEKHVRRSSVKKIEKMKEKRQA 212
Query: 249 KEEKKKEKKKKKKKK 263
K + K K K + +
Sbjct: 213 KYTENKLKAIKARNE 227
>gnl|CDD|232933 TIGR00348, hsdR, type I site-specific deoxyribonuclease, HsdR
family. This gene is part of the type I restriction and
modification system which is composed of three
polypeptides R (restriction endonuclease), M
(modification) and S (specificity). This group of
enzymes recognize specific short DNA sequences and have
an absolute requirement for ATP (or dATP) and
S-adenosyl-L-methionine. They also catalyse the
reactions of EC 2.1.1.72 and EC 2.1.1.73, with similar
site specificity.(J. Mol. Biol. 271 (3), 342-348
(1997)). Members of this family are assumed to differ
from each other in DNA site specificity [DNA metabolism,
Restriction/modification].
Length = 667
Score = 28.5 bits (64), Expect = 4.5
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R + +K+ +E E E+ +E KE KEK +K KK + + + K
Sbjct: 444 RLPEDHLDKKKLDAFFDEIFELL--PERIREITKESLKEKLQKTKKILFNEDRLESIAKD 501
Query: 240 KKKKEKKKKKEEKKK 254
+ K K+ K K
Sbjct: 502 IAEHYAKFKELFKFK 516
>gnl|CDD|223624 COG0550, TopA, Topoisomerase IA [DNA replication, recombination,
and repair].
Length = 570
Score = 28.3 bits (64), Expect = 4.5
Identities = 13/77 (16%), Positives = 34/77 (44%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+R R+ + +E E + ++ + + + E KK+ + K+K + ++ + K K
Sbjct: 182 EREREIEAFVPEEYWEIKAIFEKGGGEFSARLTEIEGKKEGRLKDKDEAEEIVNKLKGKP 241
Query: 243 KEKKKKKEEKKKEKKKK 259
+ +++ KK
Sbjct: 242 AKVVSVEKKPKKRSPPP 258
Score = 28.3 bits (64), Expect = 4.8
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
R+R+ + E+ E K +K + + + + KK+ + K K + +E K K K
Sbjct: 183 REREIEAFVPEEYWEIKAIFEKGGGEFSARLTEIEGKKEGRLKDKDEAEEIVNKLKGKPA 242
Query: 248 KKEEKKKEKKKKKKKK 263
K +K+ KK+
Sbjct: 243 KVVSVEKKPKKRSPPP 258
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins in
this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 27.8 bits (62), Expect = 4.5
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK 209
ER K+ R++ ++K + E+E E+EKKE +KK
Sbjct: 67 EREKELRKQAEQKLLEFEDELEQEKKELQKK 97
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 28.6 bits (64), Expect = 4.5
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKK--KEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ + E++ K+ E + E +E+ E + +E E K K K+ ++ +++ E
Sbjct: 256 AEMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENE 315
Query: 251 EKKKEKKKKKK 261
E ++E K KK+
Sbjct: 316 ELEEEYKIKKR 326
>gnl|CDD|218370 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 1, represents the clamp domain, which a
mobile domain involved in positioning the DNA,
maintenance of the transcription bubble and positioning
of the nascent RNA strand.
Length = 330
Score = 28.4 bits (64), Expect = 4.5
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKK----EKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ K K K K KK+ KK KKK K + K + K +
Sbjct: 104 LLNESVKYFFLKVVIDPKGKNSKKRLKKINNLCKKKSICSKCGEDNGGLKAFEGCGKYQP 163
Query: 265 KKKK 268
K K
Sbjct: 164 KISK 167
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 28.3 bits (63), Expect = 4.5
Identities = 12/73 (16%), Positives = 41/73 (56%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E E+ +++ E + K+ + + + KEK + + ++ K K + + + + ++E ++E
Sbjct: 214 ENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEE 273
Query: 256 KKKKKKKKEKKKK 268
++++ ++K ++
Sbjct: 274 AGEEQENEDKGEE 286
Score = 27.6 bits (61), Expect = 7.1
Identities = 11/70 (15%), Positives = 36/70 (51%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ E E + ++ + + + ++K ++ +E K +K + + E + + + +++ E
Sbjct: 217 ENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGE 276
Query: 251 EKKKEKKKKK 260
E++ E K ++
Sbjct: 277 EQENEDKGEE 286
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 27.9 bits (62), Expect = 4.6
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 163 GGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
G C EY G +R K + + + E + E ++EK +K
Sbjct: 8 GVCSLPPEYCEFSGDLKRCKVWLSE-NAPDLYAKLYGTDSPTAEAEAVTIGEAQEEKGEK 66
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+ +K ++ ++ KKKKK +K + + + K+K
Sbjct: 67 DLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRK 102
>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase
(trigger factor) [Posttranslational modification,
protein turnover, chaperones].
Length = 441
Score = 28.4 bits (64), Expect = 4.6
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
E+ EE K ++ + K +EK + KKK +K+ E+ + E
Sbjct: 385 GGEQPEEVIKLYYNNQELLDALKADILEEKAVDLLLANKKKVTEKEVSFEELMNEAE 441
>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain
of Ustilago maydis Rim23 (PalC), and related domains.
This family contains the Bro1-like domain of Ustilago
maydis Rim23 (also known as PalC), and related proteins.
It belongs to the BRO1_Alix_like superfamily which
includes the Bro1-like domains of mammalian Alix
(apoptosis-linked gene-2 interacting protein X),
His-Domain type N23 protein tyrosine phosphatase
(HD-PTP, also known as PTPN23), RhoA-binding proteins
Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, and related
domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23
interact with the ESCRT (Endosomal Sorting Complexes
Required for Transport) system. Rim20 and Rim23
participate in the response to the external pH via the
Rim101 pathway. Through its Bro1-like domain, Rim23
allows the interaction between the endosomal and plasma
membrane complexes. Bro1-like domains are
boomerang-shape, and part of the domain is a
tetratricopeptide repeat (TPR)-like structure.
Intermediates in the Rim101 pathway may play roles in
the pathogenesis of fungal corneal infection during
Candida albicans keratitis. This family lacks the
V-shaped (V) domain found in many members of the
BRO1_Alix_like superfamily.
Length = 413
Score = 28.5 bits (64), Expect = 4.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
E E+ K K K KK K+K+E +K +K +++ + + KK KK
Sbjct: 325 ELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTLEMLLKKYKK 376
Score = 28.1 bits (63), Expect = 5.4
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KKE + + K K KK K+K++++K +K +E+ + + KK KK
Sbjct: 323 KKELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTLEMLLKKYKKM 377
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 28.6 bits (64), Expect = 4.6
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 11/110 (10%)
Query: 171 YGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKK---EEKKKEKKKEKKKE--------K 219
K E R + R++ + + + KKE + K +
Sbjct: 353 EEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFAYMQSLKKETETLKSRIDLIMKSIIS 412
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E+KK K++ K K + + + + ++E+ KKK K K K
Sbjct: 413 GTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNK 462
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 28.5 bits (64), Expect = 4.7
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK-----EKKKKEKKKEKKKKKKKKKEKKK 240
+ +R + E +KK + E + E + EK KE K +++K+K +E
Sbjct: 486 EEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIVKVSEEEKEKIEEAIT 545
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+E + ++E+ K K ++ ++ +K
Sbjct: 546 DLEEALEGEKEEIKAKIEELQEVTQKL 572
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 27.2 bits (61), Expect = 4.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
R+ +E E+E + E +++E KEK+K KK E
Sbjct: 92 RRIKELEEELREVEAEREEAVKEKEKLLKKVEAL 125
>gnl|CDD|217451 pfam03249, TSA, Type specific antigen. There are several antigenic
variants in Rickettsia tsutsugamushi, and a
type-specific antigen (TSA) of 56-kilodaltons located on
the rickettsial surface is responsible for the
variation. TSA proteins are probably integral membrane
proteins.
Length = 502
Score = 28.3 bits (63), Expect = 5.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
QR K+ +K ++EE+ + + KK++ +K KE K K+
Sbjct: 354 QRHAGIKKAMEKLAAQQEEDAGNQGGGDCKKKQGASEKSKEGGKGKE 400
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 27.4 bits (61), Expect = 5.0
Identities = 17/84 (20%), Positives = 45/84 (53%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
RKR + + +++ +E K+ K +K K + +KK+ ++ +K K ++ +
Sbjct: 45 RKRYEEERDLRQQEFDELVTILKETSKSDKPIWKTGPIESPWEKKRNVREFQKTKAEEAQ 104
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKK 269
K++ E ++E ++ + + E+ +K+
Sbjct: 105 KEELERIREELEEARAQSEEMRKE 128
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 27.2 bits (61), Expect = 5.0
Identities = 12/37 (32%), Positives = 27/37 (72%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK 217
+K + +R+ +++ E+E E+ KKEE+ +E K++++K
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELREAKRQQRK 115
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 27.3 bits (61), Expect = 5.0
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
KK E K + K+KK +K +KE K ++K+ + K++ K KKK
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 27.3 bits (61), Expect = 5.1
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KK E K + + KKKK +K +KE K + KK + K+K K K
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGK 130
Score = 26.9 bits (60), Expect = 7.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
KK E K + K+KK +K +K+ K +KK + ++K K KKK
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 28.2 bits (63), Expect = 5.0
Identities = 16/95 (16%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 182 KQRRRKRKR---------KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
KQ+ +K + + E E++EEE+ E+ + ++ +++ +E
Sbjct: 114 KQKVKKNNKQFEDDITRYREDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASS 173
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ ++ K+ E+ + + KK+ ++ K +K +
Sbjct: 174 ESGVDRVKEDDEEDEDADLSKKDVLEEPKMFKKPE 208
>gnl|CDD|100810 PRK01194, PRK01194, V-type ATP synthase subunit E; Provisional.
Length = 185
Score = 27.6 bits (61), Expect = 5.1
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKK-KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K EK +E+KKKE E K+ +K +KE K + K+ E+K + + + KK K
Sbjct: 8 KDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKAN 67
Query: 270 DEGR 273
E R
Sbjct: 68 IEAR 71
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 28.4 bits (64), Expect = 5.1
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK 216
+Q++ + ++ ++KEE + + K+ KK
Sbjct: 527 RQQQAQYLALKQPAVKKKEEAAAPKAETVKRSSKK 561
>gnl|CDD|205150 pfam12925, APP_E2, E2 domain of amyloid precursor protein. The E2
domain is the largest of the conserved domains of the
amyloid precursor protein. The structure of E2 consists
of two coiled-coil sub-structures connected through a
continuous helix, and bears an unexpected resemblance to
the spectrin family of protein structures.E 2 can
reversibly dimerise in solution, and the dimerisation
occurs along the longest dimension of the molecule in an
antiparallel orientation, which enables the N-terminal
substructure of one monomer to pack against the
C-terminal substructure of a second monomer. The high
degree of conservation of residues at the putative dimer
interface suggests that the E2 dimer observed in the
crystal could be physiologically relevant. Heparin
sulfate proteoglycans, the putative ligands for the
precursor present in extracellular matrix, bind to E2 at
a conserved and positively charged site near the dimer
interface.
Length = 193
Score = 27.7 bits (62), Expect = 5.2
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
K+R +++ R+R + KE EE E + K K + K + K+ E+ +E
Sbjct: 32 KKRLEEKHRERMTQVMKEWEEAESQYKNLPKADPKAAQLMRKELTERFQET 82
>gnl|CDD|221673 pfam12626, PolyA_pol_arg_C, Polymerase A arginine-rich C-terminus.
The C-terminus of polymerase A in E coli is
arginine-rich and is necessary for full functioning of
the enzyme.
Length = 123
Score = 27.2 bits (61), Expect = 5.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 174 KGGKKERRKQRRRKRKRKRKK 194
+ + +RRR+R R+RKK
Sbjct: 103 EALQGREGGKRRRRRPRRRKK 123
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 28.1 bits (63), Expect = 5.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ +K+K KK KK KK K+K+
Sbjct: 219 QSSSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 28.2 bits (64), Expect = 5.3
Identities = 17/65 (26%), Positives = 25/65 (38%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E+ K+ +K K K K K K K K + +E K+K KK +
Sbjct: 594 EQAKQSSEKYKFDNLTGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCP 653
Query: 261 KKKEK 265
K+K
Sbjct: 654 NCKKK 658
Score = 28.2 bits (64), Expect = 5.8
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K + K K K K K + ++ K+K KK + KK
Sbjct: 609 TGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKK 657
Score = 27.8 bits (63), Expect = 7.5
Identities = 14/62 (22%), Positives = 22/62 (35%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K+ +K + K K K K K K + ++ + K KK + K
Sbjct: 597 KQSSEKYKFDNLTGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCK 656
Query: 267 KK 268
KK
Sbjct: 657 KK 658
>gnl|CDD|227731 COG5444, COG5444, Uncharacterized conserved protein [Function
unknown].
Length = 565
Score = 28.2 bits (63), Expect = 5.4
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK--KEKKKKKKKKKEKKKKKKEK 245
K K KK K+ +K E+ K K + K K K +
Sbjct: 414 VPYKYVDGINLKSNLKKNAYAPLKEALRKAEEVYKTPKGYNYETTHFYKIKNKVIGELSD 473
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K ++ ++ K+ + K+K GR
Sbjct: 474 KNVGQKGQRYKEVAGELKDKDGGHKIGRM 502
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 27.7 bits (62), Expect = 5.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 225 KKEKKKKKKKKKEKKKKKKEK 245
+K K K+ +K + KKKK+K
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
>gnl|CDD|226115 COG3587, COG3587, Restriction endonuclease [Defense mechanisms].
Length = 985
Score = 28.2 bits (63), Expect = 5.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
E+E + ++ K+E + +K K K + + K++KKEK K +KE K+ +
Sbjct: 619 FAEKEPELDKLKDELYEAFEKIKDLIKDRLIGADRIRNAKERKKEKIKIRKENFKEFKA 677
>gnl|CDD|182730 PRK10787, PRK10787, DNA-binding ATP-dependent protease La;
Provisional.
Length = 784
Score = 28.4 bits (63), Expect = 5.5
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
KR R R K++ EK + +E E+ K +KE + + ++ + K+K + K KE K
Sbjct: 211 KRIRNRVKKQMEKSQ--REYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAK 268
Query: 247 KKKEEKKKEKK 257
+K E + ++ K
Sbjct: 269 EKAEAELQKLK 279
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 28.4 bits (63), Expect = 5.5
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKE--EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
Y G +E +R+RKR + K+E E K +K +E+++ KE + K E KK +
Sbjct: 455 YPGHPQEHGHERKRKRGGELKEELIETLKLVKKLKEEQESLAKELEATAHKSEIKKIAES 514
Query: 231 KKK 233
+ K
Sbjct: 515 EFK 517
>gnl|CDD|153337 cd07653, F-BAR_CIP4-like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein
4 and similar proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. This subfamily is composed of
Cdc42-Interacting Protein 4 (CIP4), Formin Binding
Protein 17 (FBP17), FormiN Binding Protein 1-Like
(FNBP1L), and similar proteins. CIP4 and FNBP1L are
Cdc42 effectors that bind Wiskott-Aldrich syndrome
protein (WASP) and function in endocytosis. CIP4 and
FBP17 bind to the Fas ligand and may be implicated in
the inflammatory response. CIP4 may also play a role in
phagocytosis. Members of this subfamily typically
contain an N-terminal F-BAR domain and a C-terminal SH3
domain. In addition, some members such as FNBP1L contain
a central Cdc42-binding HR1 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 251
Score = 28.0 bits (63), Expect = 5.6
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK-KKEKKKK 259
E ++E+KK E K ++K E ++ +K KK EK K+ EK K+K EK +
Sbjct: 101 SELRQERKKHLS-EGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLT 159
Query: 260 KKKKEKKK 267
K EK K
Sbjct: 160 KADVEKAK 167
Score = 27.2 bits (61), Expect = 7.9
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
E ++E+KK + K ++K + K+ EK KK EK K+ EK K+K +K K
Sbjct: 101 SELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTK 160
Query: 269 KD 270
D
Sbjct: 161 AD 162
>gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal
protein S1 domain) [Translation, ribosomal structure and
biogenesis].
Length = 129
Score = 27.2 bits (61), Expect = 5.6
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
RK EEE +++ +K K + KE + + K ++ K++ KKK+ +
Sbjct: 74 RKLEEEPEKQHRKPRFSKSRPKEGFETLLSRLLKWIEESLSTLKRQTKKKRGGRGA 129
>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase.
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
medium chain alcohol dehydrogenase, catalyzes the
NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
meso-butanediol to acetoin. BDH functions as a
homodimer. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Sorbitol and aldose reductase are NAD(+) binding
proteins of the polyol pathway, which interconverts
glucose and fructose. Sorbitol dehydrogenase is
tetrameric and has a single catalytic zinc per subunit.
Length = 351
Score = 27.9 bits (63), Expect = 5.6
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 89 GAGGGGGGKSESTTAPS----VLPPTLHIGSREAAFTHAIATAGVVYAVARS 136
G GGGGGG +E P+ LP ++ EAA +A A +AV RS
Sbjct: 121 GLGGGGGGFAEYVVVPAYHVHKLPD--NVPLEEAALVEPLAVA--WHAVRRS 168
>gnl|CDD|204032 pfam08703, PLC-beta_C, PLC-beta C terminal. This domain
corresponds to the alpha helical C terminal domain of
phospholipase C beta.
Length = 181
Score = 27.5 bits (61), Expect = 5.6
Identities = 31/92 (33%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK--KKKKKKKEKK 239
KQ + + R++++ E +EE+ EKK++++ K++ +K E +EK+ + KK K+ +
Sbjct: 3 KQLQDLKDRQQQELLELREEQYDSEKKRKEQHLKEQIQKLTELAREKQAAQLKKLKEISE 62
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+KKE KKK + K+ E+ ++ K KEK ++ E
Sbjct: 63 KEKKELKKKLDRKRLERIQEAKTKEKHAQERE 94
>gnl|CDD|165222 PHA02896, PHA02896, A-type inclusion like protein; Provisional.
Length = 616
Score = 28.1 bits (62), Expect = 5.6
Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 12/125 (9%)
Query: 149 RTARPKDLKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKK 208
R RPKD K ++ DN E ++ K + E+E+K EE ++
Sbjct: 355 RERRPKDYKEYYI-----DNFEC-------DKMKNCPSTNGTLNRDEDEDKIEEDNDDYN 402
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ + + K++ ++ + K K + K K +++ K K +
Sbjct: 403 NDDEDDLIKDEAPILNRRHGQMDDKYDKRDHRYKNNKYDIYDDESPRYKYKDDDYDDNDD 462
Query: 269 KDEGR 273
D+
Sbjct: 463 NDDDH 467
Score = 27.7 bits (61), Expect = 7.7
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K R +R K+E+ ++ + EK EK +K +E + K K + +
Sbjct: 498 KSIRNRRNGYLLKDEDRYYYDRGH---RNLGAEKDPEKPHPDKDEEYPEDKDKSDDDRLN 554
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K +K E + +K KEK ++
Sbjct: 555 DADKAMRKLEADGFGDRYRKIKEKMDNLED 584
>gnl|CDD|217318 pfam03011, PFEMP, PFEMP DBL domain. PfEMP1 (Plasmodium falciparum
erythrocyte membrane protein) has been identified as the
rosetting ligand of the malaria parasite P. falciparum.
Rosetting is the adhesion of infected erythrocytes with
uninfected erythrocytes in the vasculature of the
infected organ, and is associated with severe malaria.
PfEMP1 interacts with Complement Receptor One on
uninfected erythrocytes to form rosettes.
Length = 150
Score = 27.3 bits (61), Expect = 5.7
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+K+ K K K K KKK + +K +KKKKE +K KE K+ K + E
Sbjct: 17 RKKLKHCINNGKGKCCKCICKKKCECVEKWIEKKKKEWEKIKEHFNKQYKIDDGRDEYNV 76
Query: 268 KK 269
+
Sbjct: 77 LE 78
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 26.8 bits (60), Expect = 5.7
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
++RR ++ K+ KEE EKE E+ +++ + KE + E + EKK +K+ +++ + K
Sbjct: 24 RKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDELK 83
Query: 243 KEKKKKKEE 251
+ K KE
Sbjct: 84 RSFNKNKEA 92
>gnl|CDD|151173 pfam10669, Phage_Gp23, Protein gp23 (Bacteriophage A118). This is
the highly conserved family of the major tail subunit
protein.
Length = 121
Score = 27.0 bits (59), Expect = 5.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKK 217
R KEE +K E ++E++ KE K+E+ K
Sbjct: 45 RVEMKEERDKMETEREKRDKESKEERDK 72
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 28.1 bits (62), Expect = 5.8
Identities = 12/71 (16%), Positives = 36/71 (50%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
+ ++ +Q+ + KEE + + + ++KE+ E ++ ++ E ++ + +K
Sbjct: 289 VSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEK 348
Query: 235 KKEKKKKKKEK 245
E+K+++ E
Sbjct: 349 GIEEKRRQMES 359
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 28.1 bits (62), Expect = 5.8
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K + +R ++EE+E+E EE ++ ++ E +E+ ++ EK +K+ E
Sbjct: 98 KNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAE 148
>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit.
This model represents the ATPase subunit of HslVU, while
the proteasome-related peptidase subunit is HslV.
Residues 54-61 of the model contain a P-loop ATP-binding
motif. Cys-287 of E. coli (position 308 in the seed
alignment), studied in MEDLINE:98389714, is Ser in other
members of the seed alignment [Protein fate, Protein
folding and stabilization].
Length = 441
Score = 28.2 bits (63), Expect = 5.8
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKE--------KKKEKKKEKKKKEKKKE 227
+E R RK+ R+ E ++KE E + K E+ + +
Sbjct: 145 EIQEEESVREAFRKKLREGELDDKEIEIEVSAKMPSGIEIMAPPGMEEMTMNLQSLFQNL 204
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
KKKK+K K K+ K+ +E K ++ K++ + + G
Sbjct: 205 GPDKKKKRKLKIKEAKKALIAEEAAKLVDPEEIKQEAIDRVEQSG 249
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 27.7 bits (62), Expect = 5.9
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
EEE + + + + + +++ +KK
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated.
Length = 143
Score = 27.3 bits (61), Expect = 5.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KK K+K +K K+ K EE+ + K+ K + KK
Sbjct: 2 LFLLKKMYNKKKNRKSNIKENKWEERVIQIKRVSKVVKGGKKL 44
>gnl|CDD|224483 COG1567, COG1567, CRISPR system related protein, RAMP superfamily
[Defense mechanisms].
Length = 313
Score = 27.8 bits (62), Expect = 5.9
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E E +KK+ KK + E + EK + K+ K + + + KK +K
Sbjct: 84 ILEGNDEIKKKKLKKISFIPIDQLESFLDGEADEKYQVKELPKRQTEIGVDSLSKKAKKA 143
Query: 254 KEKKKKKKKKE 264
+ E
Sbjct: 144 IHNGRIDADSE 154
Score = 27.4 bits (61), Expect = 8.7
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 199 KEEEKKEEKKKE-KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
E E KKK+ KK + + + +K + KE K++ E KK +K
Sbjct: 84 ILEGNDEIKKKKLKKISFIPIDQLESFLDGEADEKYQVKELPKRQTEIGVDSLSKKAKKA 143
Query: 258 KKKKKKEKK 266
+ +
Sbjct: 144 IHNGRIDAD 152
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 28.1 bits (63), Expect = 6.0
Identities = 10/84 (11%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+++R + + K+ + + ++ + +++ K + + + K++ E + + + K+
Sbjct: 639 EQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLL 698
Query: 238 KKKK--KKEKKKKKEEKKKEKKKK 259
++++ + K E + E+ K
Sbjct: 699 EQQQAFLEALKDDFRELRTERLAK 722
Score = 27.7 bits (62), Expect = 8.4
Identities = 12/61 (19%), Positives = 31/61 (50%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ E++EE++E K + +++ + E + KE + E ++ K + + + E++K
Sbjct: 277 ERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQK 336
Query: 254 K 254
Sbjct: 337 G 337
>gnl|CDD|216295 pfam01093, Clusterin, Clusterin.
Length = 434
Score = 28.1 bits (63), Expect = 6.1
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
K+ K ++ E++ K +K KK+K+E K E ++K EE+++
Sbjct: 26 KQMKTLMERTEEEHKNLMSTLEKTKKEKEEALKLANEVEEKLEEEEE 72
>gnl|CDD|191973 pfam08232, Striatin, Striatin family. Striatin is an intracellular
protein which has a caveolin-binding motif, a
coiled-coil structure, a calmodulin-binding site, and a
WD (pfam00400) repeat domain. It acts as a scaffold
protein and is involved in signalling pathways.
Length = 133
Score = 26.9 bits (60), Expect = 6.1
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 179 ERRKQRRRKRKRKRKK---EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
ERR K KR+ E K+E K +K K +K K++E+++ ++ ++
Sbjct: 40 ERRGLENLKEDLKRRIKMLEYALKQERAKLKKLKYGTDSPQKPSKEEEEEELEEDDDEES 99
Query: 236 KEKKKKKKEKKKKKEEKKK 254
+K + E KK + +K
Sbjct: 100 NSEKVDESELKKSRLYLRK 118
>gnl|CDD|221190 pfam11727, ISG65-75, Invariant surface glycoprotein. This family
is found in Trypanosome species, and appears to be one
of two invariant surface glycoproteins, ISG65 and ISG75.
that are found in the mammalian stage of the parasitic
protozoan. the sequence suggests the two families are
polypeptides with N-terminal signal sequences,
hydrophilic extracellular domains, single trans-membrane
alpha-helices and short cytoplasmic domains. they are
both expressed in the bloodstream form but not in the
midgut stage. Both polypeptides are distributed over the
entire surface of the parasite.
Length = 286
Score = 27.9 bits (62), Expect = 6.1
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K+ E K + K +K E + K + KKK K+ +K K K + E K
Sbjct: 61 VKKTEGFAANIKLALDRVKYYLEKLESRSDSKLSDSDKKKIKEICEKAKDKIDEALPEAK 120
Query: 253 KKEKKKKKKKKEKKK 267
K ++ +K +E K+
Sbjct: 121 KAGREAEKLAEEVKE 135
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 27.8 bits (62), Expect = 6.3
Identities = 17/78 (21%), Positives = 41/78 (52%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E +R+R + R + ++ + + + + E + +E +K KK++ E
Sbjct: 101 EEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAE 160
Query: 238 KKKKKKEKKKKKEEKKKE 255
+K++++E+K +EEK +E
Sbjct: 161 EKEREEEEKAAEEEKARE 178
>gnl|CDD|220897 pfam10883, DUF2681, Protein of unknown function (DUF2681). This
family of proteins is found in bacteria. Proteins in
this family are typically between 81 and 117 amino acids
in length.
Length = 87
Score = 26.2 bits (58), Expect = 6.4
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K K+ ++E +K + + E+ +K E + K + ++K EE
Sbjct: 24 KLKKAQRENRKLQAENEQLATEKAVAETEVKNAKVRQKNEEN 65
Score = 26.2 bits (58), Expect = 7.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K KK ++E +K + E ++ EK + + K K ++K ++ RR
Sbjct: 24 KLKKAQRENRKLQAENEQLATEKAVAETEVKNAKVRQKNEENTRRL 69
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional.
Length = 292
Score = 27.9 bits (63), Expect = 6.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK 209
K E ++RR R+ +K EE KEE EE +K
Sbjct: 40 KAEEIEERREVREEAEEKYEEAKEEGDLEEARK 72
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination,
and repair / Cell division and chromosome partitioning /
Translation].
Length = 953
Score = 28.0 bits (62), Expect = 6.5
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E++ +++ +E++K + E+ +K E+K+ K + E+KK K ++
Sbjct: 372 FEDDIFKKDHIQEERKNESLERFSLRK--ERKEGLKGMPRVVYEQKKLIGSIKPTLMDQL 429
Query: 254 KEKKKKKKKKE 264
+EKK E
Sbjct: 430 QEKKSPDLPDE 440
>gnl|CDD|111006 pfam02064, MAS20, MAS20 protein import receptor.
Length = 184
Score = 27.4 bits (60), Expect = 6.5
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+RR +++ +++ +E+ K EE+ E KE K +K +E E ++ +KE
Sbjct: 32 KRRNDPEFRKQLRQRAKEQAKMEEEAAEHAKEAKLQKIREFLDMEAAEDGFPSDPDEKE 90
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 26.8 bits (59), Expect = 6.6
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+ K+ ++E EEK+K +K + K++ + + K ++ + K K +
Sbjct: 40 KKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVA 99
Query: 247 KKKEEKKKE 255
K + K
Sbjct: 100 SKAGDGAKA 108
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 27.9 bits (63), Expect = 6.8
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 226 KEKKKKKKKKK---------EKKKKKKEKKKKKEEKKKEKKKKK 260
K K K K E+ K++K+++EEKKK K K K
Sbjct: 252 KAPKILKYVDKLKIDGWEWLEELISGKKEKEEEEEKKKIKPKDK 295
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 27.6 bits (61), Expect = 6.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKE 244
K+K KKK K KK +KK+ K+E
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKRE 230
Score = 27.2 bits (60), Expect = 7.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKK 247
K+K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
Members of this protein family resemble the widely
distributed ATP-dependent protease La, also called Lon
and LonA. It resembles even more closely LonB, which is
a LonA paralog found in genomes if and only if the
species is capable of endospore formation (as in
Bacillus subtilis, Clostridium tetani, and select other
members of the Firmicutes) and expressed specifically in
the forespore compartment. Members of this family are
restricted to a subset of spore-forming species, and are
very likely to participate in the program of endospore
formation. We propose the designation LonC [Protein
fate, Degradation of proteins, peptides, and
glycopeptides, Cellular processes, Sporulation and
germination].
Length = 615
Score = 27.9 bits (62), Expect = 6.8
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E + E+K E + ++++ K +E + + K++K + KK ++ +K EKKK
Sbjct: 87 ENRIERKVETRMQERQNKYLEEIRLQVLKEEKGPENSSTLKKLERLEKLEKKK 139
>gnl|CDD|187774 cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) and associated Cas proteins comprise a system
for heritable host defense by prokaryotic cells against
phage and other foreign DNA; Very large protein
containing McrA/HNH-nuclease related domain and a
RuvC-like nuclease domain; signature gene for type II.
Length = 799
Score = 28.2 bits (63), Expect = 6.8
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE--KKKKKKKKKEKKKKKKEKKKK 248
+ +EEK+E KK K K+K K K++E K + + K +K K
Sbjct: 307 TKILSKEEKQELLDLLFKKNKLTYKQKRKLLGLKEEEIFKGLRYEGLKAEKNFNISLKTY 366
Query: 249 KEEKKKEKKKKKKKKEKKKK 268
+ +K K+ K E +K
Sbjct: 367 HDLRKALGKEFLKDLELNEK 386
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 27.5 bits (61), Expect = 6.9
Identities = 15/79 (18%), Positives = 44/79 (55%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ER R+ + E+E +EE++ E+ EK + + + ++ + + +++ ++
Sbjct: 14 AQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQ 73
Query: 237 EKKKKKKEKKKKKEEKKKE 255
E+ + ++E+++ +E K+E
Sbjct: 74 ERAQWEEERERLIQEAKQE 92
>gnl|CDD|148061 pfam06229, FRG1, FRG1-like family. The human FRG1 gene maps to
human chromosome 4q35 and has been identified as a
candidate for facioscapulohumeral muscular dystrophy.
Currently, the function of FRG1 is unknown.
Length = 189
Score = 27.4 bits (61), Expect = 6.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
E + + + +E K KK +K ++KK + E K+ KK + E
Sbjct: 129 MEARFKPRIKESKYVKKFQKIQDKKLRLSDDEVKRLKKARAE 170
>gnl|CDD|181091 PRK07720, fliJ, flagellar biosynthesis chaperone; Validated.
Length = 146
Score = 27.0 bits (60), Expect = 6.9
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
Q R + RK++ E+ E KK EK KEKK+E ++K + KE
Sbjct: 89 QAREQMNRKQQDLTEKNIEVKKYEKMKEKKQEMFALEEKAAEMKE 133
Score = 26.6 bits (59), Expect = 9.5
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKK-EKKKEKKKEKKKKEKKKEKKK 230
Q + R++ +++ EK E KK EK KEKK+E E+K + K
Sbjct: 84 QLLVMQAREQMNRKQQDLTEKNIEVKKYEKMKEKKQEMFALEEKAAEMK 132
>gnl|CDD|218532 pfam05276, SH3BP5, SH3 domain-binding protein 5 (SH3BP5). This
family consists of several eukaryotic SH3 domain-binding
protein 5 or c-Jun N-terminal kinase (JNK)-interacting
proteins (SH3BP5 or Sab). Sab binds to and serves as a
substrate for JNK in vitro, and has been found to
interact with the Src homology 3 (SH3) domain of
Bruton's tyrosine kinase (Btk). Inspection of the
sequence of Sab reveals the presence of two putative
mitogen-activated protein kinase interaction motifs
(KIMs) similar to that found in the JNK docking domain
of the c-Jun transcription factor, and four potential
serine-proline JNK phosphorylation sites in the
C-terminal half of the molecule.
Length = 240
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/76 (15%), Positives = 35/76 (46%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ + E E+ +KE +E + + + ++ +K K+ K + + K+ ++ +
Sbjct: 129 RVMEAESERTRAEKEHASEEAELLVAELRLRQLEKILKRAINKSRPYFELKQVYTQQLEI 188
Query: 251 EKKKEKKKKKKKKEKK 266
+K ++ + K + K
Sbjct: 189 QKLLVQELEAKVAQAK 204
>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain. Sof1 is essential for cell
growth and is a component of the nucleolar rRNA
processing machinery.
Length = 88
Score = 26.1 bits (58), Expect = 7.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K ++ K+E K+ +K+KE+ ++K K K E+KK
Sbjct: 49 KAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
>gnl|CDD|224273 COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family)
[Replication, recombination, and repair].
Length = 248
Score = 27.7 bits (62), Expect = 7.1
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 193 KKEEEEKEEEKKE--EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ E+EE EE + E + +E ++ K+ + E ++E++ K K + K KKE++ +E
Sbjct: 81 EAEDEELEEPRDELVARLEEYERYKEAAELLAELEEERRDVFSKIKPEIKIKKERRPVEE 140
Query: 251 ----------EKKKEKKKKKKKKEKKKKKDE 271
+K + K+++ E ++ E
Sbjct: 141 ISLIDLFRAYQKILRRVKQEELVEIERIVLE 171
Score = 27.3 bits (61), Expect = 8.1
Identities = 15/88 (17%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEK-------KKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+E E++E E+ ++ + +E ++ K + +E++++ K K + + KK+++ +
Sbjct: 80 EEAEDEELEEPRDELVARLEEYERYKEAAELLAELEEERRDVFSKIKPEIKIKKERRPVE 139
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ +K ++ K+++ E R
Sbjct: 140 EISLIDLFRAYQKILRRVKQEELVEIER 167
>gnl|CDD|187870 cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily
protein Cas6f. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas6f is an endoribonuclease that generates crRNA; This
family is specific for CRISPR/Cas system I-F subtype;
Possesses RRM fold; also known as Csy4 family.
Length = 185
Score = 27.2 bits (61), Expect = 7.1
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 180 RRKQRR----RKRKRKRKKEEEEKEEEKKEEKKKEKKKE 214
R Q + R R+R+ K+ EE +EE + + + +
Sbjct: 99 SRVQAKSSPERLRRRRLKRGEETEEEARARDIPDTESRT 137
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 27.7 bits (62), Expect = 7.2
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK---KKKKKEK 245
KR + +E K EK +K +++ ++ +KEK K + + K + K E + +K K
Sbjct: 29 KRLAELLKEMKRLEKDLKKLQKRGEQLQKEKDKLQSEHSKAILARSKLESLCRELQKHNK 88
Query: 246 KKKKEEKKKEKKKKKKKKE 264
K+E K + ++++K+KE
Sbjct: 89 TLKEENKARSDEEEEKRKE 107
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 27.7 bits (62), Expect = 7.2
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK--KEEKK 253
E E E+ + E K+E + ++ E +K + KE K +
Sbjct: 365 ETLIEIERLDFFFFEDKEEVRLKRLANVIVAEVLEKDAEGLITSDWTKENIIHWVKAVAR 424
Query: 254 KEKKKKKK 261
K K
Sbjct: 425 LFGVKGPK 432
>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region. Remorins are
plant-specific plasma membrane-associated proteins. In
tobacco remorin co-purifies with lipid rafts. Most
remorins have a variable, proline-rich C-half and a more
conserved N-half that is predicted to form coiled coils.
Consistent with this, circular dichroism studies have
demonstrated that much of the protein is alpha-helical.
Remorins exist in plasma membrane preparations as
oligomeric structures and form filaments in vitro. The
proteins can bind polyanions including the extracellular
matrix component oligogalacturonic acid (OGA). In vitro,
remorin in plasma membrane preparations is
phosphorylated (principally on threonine residues) in
the presence of OGA and thus co-purifies with a protein
kinases(s). The biological functions of remorins are
unknown but roles as components of the
membrane/cytoskeleton are possible.
Length = 112
Score = 26.5 bits (59), Expect = 7.2
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 199 KEEEKKEEKKKEKKKEKKK---EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+E EK + K +++E K E KKK K + + KK ++K EKKK + +K K +
Sbjct: 14 EEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAEAAEKLKNKLAAAH 73
Query: 256 KKKKKKKKEKKKKKDE 271
KK ++K+ + K+ E
Sbjct: 74 KKAEEKRATAEAKRGE 89
>gnl|CDD|222959 PHA02999, PHA02999, Hypothetical protein; Provisional.
Length = 382
Score = 27.8 bits (62), Expect = 7.3
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KK+ E+ K K KK + KKK KK +E + E KK K KK K
Sbjct: 89 KKQISSEENTMKMDK-KKYKLKKKIKKVREINDTIRFAHYDYETIKKGYIKFKKMIRKDI 147
>gnl|CDD|223436 COG0359, RplI, Ribosomal protein L9 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 26.8 bits (60), Expect = 7.4
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K K + ++ K +KK ++ + E KEK + K + K ++G+
Sbjct: 34 GLAVPATKGNLKLLEARRAKLEKKAAEELAEAEALKEKLEGKTVEIAVKAGEDGK 88
>gnl|CDD|216016 pfam00602, Flu_PB1, Influenza RNA-dependent RNA polymerase subunit
PB1. Two GTP binding sites exist in this protein.
Length = 740
Score = 27.9 bits (62), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
K E K K K K+ KE K K+K+ K++ + ++E
Sbjct: 177 KPEVKFTKHKNNKRRYDDKETGKLLKRKQPSKEKDRITREE 217
Score = 27.5 bits (61), Expect = 8.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K + K K K K+ KE K K+K+ K+KD R
Sbjct: 177 KPEVKFTKHKNNKRRYDDKETGKLLKRKQPSKEKDRITRE 216
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 26.4 bits (58), Expect = 7.5
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K + K++K +K K K KKK K+KKK++ + +E+ +K +K+ +E+
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKEVPRER 58
>gnl|CDD|234045 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter [Cellular processes,
Sporulation and germination].
Length = 382
Score = 27.7 bits (62), Expect = 7.8
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
GGKK K+ ++ + +E+ +K + E KE E K+K +K K++ +K
Sbjct: 275 GGKKIYLKKPPKEFAKYDVEEKTKKFGLWRWSLPIEIVKETYYEVKEKVEKVTKEEAIEK 334
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
KEK +K+ +K+ K K ++ E
Sbjct: 335 AKEKAEKELKKELDPNAKIVSDKILSERVE 364
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 27.1 bits (60), Expect = 7.9
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ R+ R + K+ R+K EE + E ++ K+ +KK K + + K++
Sbjct: 4 SKKTRRPRSKADKKARRKTREELDAEARDRKR--QKKRKGLASGSRHSGGNENSGNKQQN 61
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+KK + KK EK K+ K + +K K
Sbjct: 62 QKKDPRIGSKKPIPLGVTEKVTKQHKPKSEKPK 94
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 25.9 bits (57), Expect = 7.9
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
G K +R +++ ++ R+ + +E+ E+ K KK++ K++ K
Sbjct: 25 GAKHQRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKS 68
Score = 25.9 bits (57), Expect = 8.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
K +R +K++ K E E +E+ E+ K K+K+ +++ K
Sbjct: 27 KHQRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKS 68
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 27.8 bits (61), Expect = 8.1
Identities = 17/102 (16%), Positives = 57/102 (55%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
N YG + K + R K RK E + E+K+ E+ + +++E+ + ++ + ++E
Sbjct: 423 NGHYGGRVDKDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERE 482
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ ++++ ++E+ ++ + ++ + + ++E+ + ++ +K +
Sbjct: 483 RLERERLERERLERDRLERDRLDRLERERVDRLERDRLEKAR 524
>gnl|CDD|227545 COG5220, TFB3, Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH, subunit TFB3 [Cell division and chromosome
partitioning / Transcription / DNA replication,
recombination, and repair].
Length = 314
Score = 27.7 bits (61), Expect = 8.1
Identities = 14/71 (19%), Positives = 35/71 (49%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ EE+ K+ ++ + ++ + K+K +K K KK++ +++ EE+
Sbjct: 123 LIDVSLTEEKVKKYEEMNQDSILNNLERPTPEVMPGKQKNVLQKRMKLKKRQLERQIEEE 182
Query: 253 KKEKKKKKKKK 263
++ K+ KK+
Sbjct: 183 ERMNKEWTKKE 193
>gnl|CDD|205200 pfam13019, Telomere_Sde2, Telomere stability and silencing. Sde2
has been identified in fission yeast as an important
factor in telomere formation and maintenance. This is a
more N-terminal domain on these nuclear proteins, and is
essential for telomeric silencing and genomic stability.
Length = 163
Score = 27.1 bits (60), Expect = 8.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK 217
RR R K E K E +KKEK+ +K+
Sbjct: 121 RRLRTVNEAKALAEYLAIKPEMEKKEKEARRKR 153
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 27.8 bits (63), Expect = 8.4
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
K++EEEKEE+++ E++ + E+ KE +K K+ +
Sbjct: 478 KEDEEEKEEKEEAEEEFKPLLERLKE-ALGDKVKDVR 513
>gnl|CDD|234547 TIGR04330, cas_Cpf1, CRISPR-associated protein Cpf1, subtype
PREFRAN. This family is the long protein of a novel
CRISPR subtype, PREFRAN, which is most common in
Prevotella and Francisella, although widely distributed.
The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the
helicase Cas3 and endonuclease Cas3-HD.
Length = 1287
Score = 27.9 bits (62), Expect = 8.4
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
KK+ + ++ K K++K E+K KK KK+ + E+ KE K + E
Sbjct: 380 YIKKQIEPRKGKSKKEKYEEKVKKVVKKQDYLSIQFINDLLEKYIKEFDSKDRLFEN 436
>gnl|CDD|220183 pfam09331, DUF1985, Domain of unknown function (DUF1985). Members
of this family of functionally uncharacterized domains
are found in a set of Arabidopsis thaliana hypothetical
proteins.
Length = 142
Score = 26.6 bits (59), Expect = 8.5
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K KEKK +KK KK K KK + +EK KKKKKK+ + +
Sbjct: 39 GKYPKEKKVKKKGTLKKGPFWNKLFGLKKDVTVDDVEEKLKKKKKKDSEDRL 90
>gnl|CDD|225074 COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [Translation,
ribosomal structure and biogenesis].
Length = 125
Score = 26.6 bits (59), Expect = 8.6
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
R+R + + +K + + EK K+ + K K K E KK ++
Sbjct: 46 PRRRINIKHLEPTDKVIDLVRGASDEKVKKANEAAGVLAKLDKSAKNLETKKVREP--LT 103
Query: 249 KEEKKKEKKKKKKKKEKKKKK 269
E+ K K K+++ + K
Sbjct: 104 DAERFKVMKLVKEERLQVGKA 124
>gnl|CDD|118308 pfam09776, Mitoc_L55, Mitochondrial ribosomal protein L55. Members
of this family are involved in mitochondrial biogenesis
and G2/M phase cell cycle progression. They form a
component of the mitochondrial ribosome large subunit
(39S) which comprises a 16S rRNA and about 50 distinct
proteins.
Length = 116
Score = 26.3 bits (58), Expect = 8.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEK 211
E R+ R RKRK K K EE+ E+ + +K K
Sbjct: 80 EERRARLRKRKPKSKLTIEEELEDTFDAEKYMK 112
>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional.
Length = 198
Score = 27.0 bits (60), Expect = 8.8
Identities = 19/67 (28%), Positives = 39/67 (58%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
++ +E E+K E EE +KE +K K++ +K+ E K E +K K + + +K++ K
Sbjct: 9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAK 68
Query: 250 EEKKKEK 256
E ++++
Sbjct: 69 LEVRRKR 75
>gnl|CDD|153355 cd07671, F-BAR_PSTPIP1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Protein 1. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Proline-Serine-Threonine
Phosphatase-Interacting Protein 1 (PSTPIP1), also known
as CD2 Binding Protein 1 (CD2BP1), is mainly expressed
in hematopoietic cells. It is a binding partner of the
cell surface receptor CD2 and PTP-PEST, a tyrosine
phosphatase which functions in cell motility and Rac1
regulation. It also plays a role in the activation of
the Wiskott-Aldrich syndrome protein (WASP), which
couples actin rearrangement and T cell activation.
Mutations in the gene encoding PSTPIP1 cause the
autoinflammatory disorder known as PAPA (pyogenic
sterile arthritis, pyoderma gangrenosum, and acne)
syndrome. PSTPIP1 contains an N-terminal F-BAR domain,
PEST motifs, and a C-terminal SH3 domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 242
Score = 27.2 bits (60), Expect = 8.9
Identities = 18/73 (24%), Positives = 40/73 (54%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+EE K E+ +E++KE++K+ + ++ +K K KK + KK +++ +E + E+
Sbjct: 84 REELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTF 143
Query: 259 KKKKKEKKKKKDE 271
++ K+ E
Sbjct: 144 ERSSSTGNPKQSE 156
>gnl|CDD|233255 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subunit,
Gram-positive. Operationally, topoisomerase IV is a
type II topoisomerase required for the decatenation of
chromosome segregation. Not every bacterium has both a
topo II and a topo IV. The topo IV families of the
Gram-positive bacteria and the Gram-negative bacteria
appear not to represent a single clade among the type II
topoisomerases, and are represented by separate models
for this reason [DNA metabolism, DNA replication,
recombination, and repair].
Length = 738
Score = 27.5 bits (61), Expect = 9.0
Identities = 14/55 (25%), Positives = 31/55 (56%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
K+E+ + EKK ++ EK + K KK+ ++ KK+ ++++ + E+ + K
Sbjct: 433 KEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFAQQRRSQIEDFINQIK 487
>gnl|CDD|216286 pfam01076, Mob_Pre, Plasmid recombination enzyme. With some
plasmids, recombination can occur in a site specific
manner that is independent of RecA. In such cases, the
recombination event requires another protein called Pre.
Pre is a plasmid recombination enzyme. This protein is
also known as Mob (conjugative mobilisation).
Length = 196
Score = 26.9 bits (60), Expect = 9.0
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKK----KKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+K K +K +++ E K ++ +K + +E KE K+ +
Sbjct: 8 RMQKVKAGNLDGIQKHNQRENETYDNKDIDPERSGLNYDLVNDKTIRYDEDIKEYIKENQ 67
Query: 262 KKEKKKKKD 270
K ++K +KD
Sbjct: 68 KSKRKIRKD 76
>gnl|CDD|217145 pfam02616, ScpA_ScpB, ScpA/B protein. ScpA and ScpB participate in
chromosomal partition during cell division. It may act
via the formation of a condensin-like complex containing
smc that pull DNA away from mid-cell into both cell
halves. These proteins are part of the Kleisin
superfamily.
Length = 177
Score = 27.0 bits (60), Expect = 9.0
Identities = 13/65 (20%), Positives = 29/65 (44%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
R +K +E + ++E + EK K K+++K + +KK E + + +
Sbjct: 56 RSFSKKPVTLDEFIKTLEEELVEVEKSVLDLIHAFNKLVKRKRKNRLRKKNETELEVSVE 115
Query: 246 KKKKE 250
+ +E
Sbjct: 116 EVLEE 120
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 26.2 bits (58), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KK++KK K K KKKK K K ++K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 27.2 bits (60), Expect = 9.1
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 178 KERRKQRRRK-RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KE ++ + K + +++KEE KE E+ E + +E ++ K+ + + + +E KK +
Sbjct: 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV 193
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
KK+ ++ + E +E+ KE
Sbjct: 194 YDLKKRWDELEPGVELPEEELISDLVKE 221
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 27.5 bits (61), Expect = 9.2
Identities = 19/92 (20%), Positives = 36/92 (39%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R +R R + E + + E+ E + + + KK K KK + KK
Sbjct: 185 RAVKRMFAEVWSRPPFGHDXEVTYYDGCESEEDDEGWYIEPQDATPEGKKGKNKKGRGKK 244
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ +E+ E KK ++++ K E
Sbjct: 245 HNAFSRRGLSDEEYDEYKKIREERGGKYSIQE 276
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 27.3 bits (61), Expect = 9.3
Identities = 17/85 (20%), Positives = 42/85 (49%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
RRRK+ E E + E K++ +K E ++ + + ++ ++ + +KK +
Sbjct: 195 LRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKK 267
E EE+++ +++ K+ + +K
Sbjct: 255 SEGGDLFEEREQLERQLKEIEAARK 279
>gnl|CDD|152713 pfam12278, SDP_N, Sex determination protein N terminal. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 168 and 410 amino
acids in length. This family is the N terminal end of
the sex determination protein of many different animals.
It plays a role in the gender determination of around
20% of all animals.
Length = 168
Score = 26.9 bits (59), Expect = 9.5
Identities = 17/83 (20%), Positives = 48/83 (57%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
R K K+ R ++ E + E+++ + ++E+ ++++E++ EK KKK + + ++K
Sbjct: 10 HRDEKFKQLRSEDSESGLRSRTEDERLQHRREEWFIQQEREREHEKLKKKMILEYELRRK 69
Query: 243 KEKKKKKEEKKKEKKKKKKKKEK 265
+E +K ++ + K + + +++
Sbjct: 70 REIEKLLSKRSRTKSRSPESQDR 92
>gnl|CDD|107164 PHA02277, PHA02277, hypothetical protein.
Length = 150
Score = 26.6 bits (58), Expect = 9.6
Identities = 16/55 (29%), Positives = 34/55 (61%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+EK K K K +K++ KEK+++ ++K++++ +KK E +K + KK ++
Sbjct: 96 QEKVGKAKDKLNEKREAYLKEKQEELRQKQQEEAQKKTESDSNEKVIQLKKNDEQ 150
>gnl|CDD|219174 pfam06780, Erp_C, Erp protein C-terminus. This family represents
the C-terminus of bacterial Erp proteins that seem to be
specific to Borrelia burgdorferi (a causative agent of
Lyme disease). Borrelia Erp proteins are particularly
heterogeneous, which might enable them to interact with
a wide variety of host components.
Length = 141
Score = 26.6 bits (59), Expect = 9.6
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK-----KKKKEKKKKK 249
EEEE K K+ E ++ + K + K K + K KE K+ EK K K
Sbjct: 58 EEEEDSGLGKLLKELEDARDSLRTKLNEGNKPYTKDNEPKLKENVKVSEIKEDLEKLKSK 117
Query: 250 EEKKKEKKKKKKKKEKKKK 268
E+ KE + K E+ K
Sbjct: 118 LEEVKEYLEDKDNFEEIKG 136
>gnl|CDD|220388 pfam09766, FimP, Fms-interacting protein. This entry carries part
of the crucial 144 N-terminal residues of the FmiP
protein, which is essential for the binding of the
protein to the cytoplasmic domain of activated
Fms-molecules in M-CSF induced haematopoietic
differentiation of macrophages. The C-terminus contains
a putative nuclear localisation sequence and a leucine
zipper which suggest further, as yet unknown, nuclear
functions. The level of FMIP expression might form a
threshold that determines whether cells differentiate
into macrophages or into granulocytes.
Length = 352
Score = 27.3 bits (61), Expect = 9.7
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 182 KQRRRKRKRKRKKEEEE---KEEEKKEEKKKEKKKEKKKEKKKKEKKK------EKKKKK 232
K+ R K K EE E EE + + + EK + E++K+
Sbjct: 47 KEINRCLDFKSKDEEIELVPLEEFYAQAPEDISRPEKTPLDEHNLMLARLEWELEQRKEL 106
Query: 233 KKKKEKKKKKKEKKKKKEEKKKE 255
+K ++ + +KEK ++ EKKKE
Sbjct: 107 AEKLKELESEKEKLQQDIEKKKE 129
>gnl|CDD|220261 pfam09484, Cas_TM1802, CRISPR-associated protein TM1802
(cas_TM1802). Clusters of short DNA repeats with
non-homologous spacers, which are found at regular
intervals in the genomes of phylogenetically distinct
prokaryotic species, comprise a family with recognisable
features. This family is known as CRISPR (short for
Clustered, Regularly Interspaced Short Palindromic
Repeats). A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins. This minor cas protein is
found in at least five prokaryotic genomes:
Methanosarcina mazei, Sulfurihydrogenibium azorense,
Thermotoga maritima, Carboxydothermus hydrogenoformans,
and Dictyoglomus thermophilum, the first of which is
archaeal while the rest are bacterial.
Length = 584
Score = 27.3 bits (61), Expect = 9.7
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
E+ KK + +K K+K + K + K KK +K +K ++ KK +
Sbjct: 90 YDPEETLNKKLKSIFKKFYKDKGEINKYRYFLKDIKKVLEKNFEKIIKDLIDLKKNE 146
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 27.7 bits (61), Expect = 9.8
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+E +E E E+K E+ + KE K E K ++E++ +E+ +
Sbjct: 3909 DEPNEEDLLET--EQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGID 3966
Query: 265 KKKKKDEG 272
+ + D
Sbjct: 3967 DEIQPDIQ 3974
>gnl|CDD|220303 pfam09592, DUF2031, Protein of unknown function (DUF2031). This
protein is expressed in Plasmodium; its function is
unknown. It may be the product of gene family pyst-b.
Length = 228
Score = 26.9 bits (60), Expect = 9.8
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 192 RKKEEEEKEE-----------EKKEEKKKEKKKEKK--------KEKKKKEKKKEKKKKK 232
RK+ EE K+E + ++K+ KK E K+ + +E E + +
Sbjct: 118 RKELEEVKKELDNKRNGELAIQPIQDKRIIKKDENSSVSEHEDFKQLENEENFLETEYNE 177
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKK 258
KK K +K K+ +KK K
Sbjct: 178 ITSSNNYKKLKINRKLKKAEKKLIKS 203
>gnl|CDD|181465 PRK08557, PRK08557, hypothetical protein; Provisional.
Length = 417
Score = 27.4 bits (61), Expect = 9.9
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK---------KKEKKKKEKKKEKKKKKKK 234
+RR + + K+E E EE E + + + KKE + K K KK+
Sbjct: 86 KRRLKGKYIKEELIENPEELNEILENDYVGVEIGNFLGVGVKKEDRIKIKDLSLKKELDF 145
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K + +K K++ ++ ++ K EK K K
Sbjct: 146 EKIEDYLEKNKERIEKLEENSLSILKDYIEKYKNK 180
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 27.1 bits (60), Expect = 9.9
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
KK E +K K K K KK KK + E
Sbjct: 347 VDAYPKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
>gnl|CDD|234032 TIGR02855, spore_yabG, sporulation peptidase YabG. Members of this
family are the protein YabG, demonstrated for Bacillus
subtilis to be an endopeptidase able to release
N-terminal peptides from a number of sporulation
proteins, including CotT, CotF, and SpoIVA. It appears
to be expressed under control of sigma-K [Cellular
processes, Sporulation and germination].
Length = 283
Score = 27.3 bits (61), Expect = 10.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
++ E + E+KK KK+ K++ + ++ K K+KKE + K
Sbjct: 46 LDDLELVDESERKKRKKRFKERMETSYRLFRQDYKLMKEKKEYRATGGYK 95
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.306 0.126 0.359
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,061,853
Number of extensions: 1472564
Number of successful extensions: 62202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31651
Number of HSP's successfully gapped: 7162
Length of query: 275
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 179
Effective length of database: 6,679,618
Effective search space: 1195651622
Effective search space used: 1195651622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.0 bits)