RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17095
(275 letters)
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
frizzled, fatty acylation, glycosylation, signaling
protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
laevis}
Length = 316
Score = 117 bits (293), Expect = 3e-31
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 15/151 (9%)
Query: 43 LSFGQVRQCSLFADHMASVGRGAAESIAECQHQFRHHRWNCSSGGPGAGGGGGGKSESTT 102
++ + + + ASV GA I EC++QF RWNC +T
Sbjct: 4 VNNFLMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPE---------------ST 48
Query: 103 APSVLPPTLHIGSREAAFTHAIATAGVVYAVARSCKDGSLPSCGCSRTARPKDLKREWLW 162
L +RE +F HAI++AGV+Y + R+C G +CGC + + R W+W
Sbjct: 49 LQLATHNGLRSATRETSFVHAISSAGVMYTLTRNCSMGDFDNCGCDDSRNGRIGGRGWVW 108
Query: 163 GGCGDNLEYGYKGGKKERRKQRRRKRKRKRK 193
GGC DN E+G + K + R
Sbjct: 109 GGCSDNAEFGERISKLFVDGLETGQDARALM 139
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 69.7 bits (171), Expect = 1e-13
Identities = 11/95 (11%), Positives = 28/95 (29%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E+ + + KR+K+ ++ KK + K + + K
Sbjct: 865 KAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAK 924
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + + + + E + + +
Sbjct: 925 LKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 959
Score = 68.2 bits (167), Expect = 4e-13
Identities = 10/93 (10%), Positives = 28/93 (30%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K++++ ++ + K+ E K + + + K K E + +
Sbjct: 879 KRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSL 938
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E + + + + E+K
Sbjct: 939 EGQSNSDLLSILAQLTELNYNGVPELTERKDTF 971
Score = 67.0 bits (164), Expect = 9e-13
Identities = 8/93 (8%), Positives = 23/93 (24%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + + E E + E + + + +
Sbjct: 906 SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELT 965
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E+K ++ + E K E ++ +
Sbjct: 966 ERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ 998
Score = 64.7 bits (158), Expect = 5e-12
Identities = 5/96 (5%), Positives = 24/96 (25%), Gaps = 1/96 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK-EKKKEKKKKEKKKEKKKKKKKK 235
+ + + + + E E + E + + +
Sbjct: 901 WATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNG 960
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ ++K+ ++ + + K + +
Sbjct: 961 VPELTERKDTFFAQQWTGVKSSAETYKNTLLAELER 996
Score = 64.3 bits (157), Expect = 8e-12
Identities = 10/93 (10%), Positives = 28/93 (30%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G E + + + E + E + E + + + + ++K
Sbjct: 910 GSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKD 969
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ K E K + ++ +K +
Sbjct: 970 TFFAQQWTGVKSSAETYKNTLLAELERLQKIED 1002
Score = 59.3 bits (144), Expect = 4e-10
Identities = 6/89 (6%), Positives = 23/89 (25%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + K + E + + + + + + K ++ K
Sbjct: 921 VQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVK 980
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+ K + E+ ++ +
Sbjct: 981 SSAETYKNTLLAELERLQKIEDLHHHHHH 1009
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 64.4 bits (157), Expect = 7e-12
Identities = 17/100 (17%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K Q +R +++ ++ K E + E+ K+ + + + ++K +++ K+ K
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947
Query: 237 EKKKKKKEKKKKKEEKK-KEKKKKKKKKEKKKKKDEGRRR 275
+K E E +K + ++ + E++ K R
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Score = 63.6 bits (155), Expect = 1e-11
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK---EKKKEKKKKEKKKEKKKKKK 233
+ R+ ++ +K K E E KK E K ++K +++ KE K +K
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ + ++ + E + +++ K + E
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
Score = 63.6 bits (155), Expect = 1e-11
Identities = 14/100 (14%), Positives = 44/100 (44%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ ++ + + +++ +E+ +E K +K E + ++ + + ++ + +
Sbjct: 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+E K +EE K +K+ + + +KK +E +
Sbjct: 977 EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016
Score = 62.0 bits (151), Expect = 5e-11
Identities = 19/95 (20%), Positives = 40/95 (42%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
E ++ R + EEE K + +++ K +KE + + +KK ++
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K E ++ E K++ K +KE+ ++
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047
Score = 61.3 bits (149), Expect = 9e-11
Identities = 18/95 (18%), Positives = 42/95 (44%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K + QR+ + K K EK + E +K + ++ + ++E K +
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+++ + +K+ + + EKK ++ +K K + E
Sbjct: 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Score = 60.1 bits (146), Expect = 2e-10
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK-----KKEKKKK 231
KK + + +RK +E+ KE + EK + E +K + +++
Sbjct: 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA 979
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K ++E K ++E + + +KK +E K
Sbjct: 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019
Score = 60.1 bits (146), Expect = 2e-10
Identities = 19/93 (20%), Positives = 41/93 (44%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+E +K + R +R K+ E K + +++ ++ K+ K EK + +
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
EK + E+ + EE+ K + +++ K
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995
Score = 59.7 bits (145), Expect = 3e-10
Identities = 16/93 (17%), Positives = 39/93 (41%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+R+ + K + ++ E E +K + ++ ++E K + ++E
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K +KE + + EKK ++ K K + ++
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Score = 58.6 bits (142), Expect = 6e-10
Identities = 18/108 (16%), Positives = 48/108 (44%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
NLE Y ++ R R R + + + +E+ + +KE + + +K+ +E
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K K + E+ + +++ + +KE+ ++ + K+ + ++
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
Score = 57.8 bits (140), Expect = 1e-09
Identities = 10/96 (10%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK---K 234
+ + ++ + K + +++ +++ ++ K ++ + + EK + +
Sbjct: 914 RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR 973
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
E++ K + +++ K +K+ + + +KK
Sbjct: 974 MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Score = 57.8 bits (140), Expect = 1e-09
Identities = 12/105 (11%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 176 GKKERRKQRRRK---------RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+R+ ++ K +K E + + ++K +++ ++ K ++ E
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY 958
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +K + ++ + E++ K + +++ K +K+
Sbjct: 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003
Score = 57.0 bits (138), Expect = 2e-09
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K R R R K + ++ K+E KK K + + + KK + K
Sbjct: 872 KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Query: 237 EKKKK---KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ ++K + ++ K EK + + +K + D R R
Sbjct: 932 QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR 973
Score = 56.7 bits (137), Expect = 3e-09
Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK-- 234
KE + + + E ++ E+ + ++E K + +E+ K +K
Sbjct: 941 NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000
Query: 235 ---KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ EKK ++ K K E ++ + K++ K + E
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040
Score = 56.3 bits (136), Expect = 3e-09
Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK-KEKKKEKKKKEKKKEKKKKKKKK 235
K + K + + E ++E K + ++E K K+ + + +KK
Sbjct: 950 KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+ K + + ++ + +++ K EK++
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045
Score = 56.3 bits (136), Expect = 3e-09
Identities = 12/101 (11%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEK--KKEKKKEKKKKEKKKEKKKKKKK 234
K + + + + K E E ++ + + + +++ K + +++ K
Sbjct: 936 KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+++ + + +KK EE + K + ++ + K+ +
Sbjct: 996 LRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036
Score = 55.5 bits (134), Expect = 7e-09
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK--EKKKEKKKKKKK 234
K Q+ + R + + + K++ KK K + E+ KK
Sbjct: 865 HKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHI 924
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E K + ++K ++ K+ + +K + E
Sbjct: 925 GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961
Score = 54.3 bits (131), Expect = 2e-08
Identities = 13/94 (13%), Positives = 42/94 (44%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ R + + ++E K ++ + + EKK ++ +K K + ++ + +
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ + +K++ ++ + K+ + +KK E
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVE 1063
Score = 54.0 bits (130), Expect = 2e-08
Identities = 18/106 (16%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK----- 232
+ ++ + R +EE + K+ + + +KK ++ K + + E+ +
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032
Query: 233 ---KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K +KE+ ++ + K+ + EKK ++ K+ + ++ R R
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 50.9 bits (122), Expect = 2e-07
Identities = 14/91 (15%), Positives = 43/91 (47%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + RK + + E++ EE + K + ++ + +++ K EK++ ++
Sbjct: 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
++ K+ E +KK ++ ++ + E+ +
Sbjct: 1048 DQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 50.5 bits (121), Expect = 3e-07
Identities = 16/94 (17%), Positives = 35/94 (37%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ + + K + E + +K + + + K + ++ K+E
Sbjct: 846 QALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE 905
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KK K E + + KK + K + ++K DE
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE 939
Score = 49.3 bits (118), Expect = 6e-07
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+ +R Q R + K + + K +K + +
Sbjct: 826 QRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHR 885
Query: 233 KKKK--------EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K + K+E KK K E + ++ KK + K + +R+
Sbjct: 886 TLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRK 936
Score = 48.6 bits (116), Expect = 1e-06
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKK-EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
Q+ ++ RK+ + ++ + + K + +E K +K + +
Sbjct: 823 QKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVH 882
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K + ++ K+E KK K E R
Sbjct: 883 YHRTLKAIVYLQCCYRRMMAKRELKKLKIEARS 915
Score = 37.4 bits (87), Expect = 0.004
Identities = 9/94 (9%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 183 QRRRKRKRKRKKEEEEKEEE-----KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
QR + + R + +K ++ +K + + + + + +
Sbjct: 798 QRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNK 857
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +E K +K + + K
Sbjct: 858 YQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIV 891
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 55.9 bits (134), Expect = 1e-09
Identities = 14/74 (18%), Positives = 37/74 (50%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
R +E E + +EE++K ++ K +++ +EK KK ++ +++ ++ +K K
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 251 EKKKEKKKKKKKKE 264
+ +K ++
Sbjct: 138 NRIADKAFYQQPDA 151
Score = 52.9 bits (126), Expect = 1e-08
Identities = 13/65 (20%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
RK R +RKR ++ + + ++E +++ KK+ ++ +++ ++ EK K + +K
Sbjct: 88 RKWREEQRKRLQELDAAS--KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
Query: 241 KKKEK 245
++
Sbjct: 146 YQQPD 150
Score = 51.7 bits (123), Expect = 3e-08
Identities = 10/66 (15%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
RK + +++K +E + + +++ +EK K+ ++ +++ ++ +K K + K
Sbjct: 88 RKWREEQRKRLQELDAA--SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
Query: 246 KKKKEE 251
++ +
Sbjct: 146 YQQPDA 151
Score = 47.8 bits (113), Expect = 5e-07
Identities = 12/61 (19%), Positives = 32/61 (52%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++E+RK+ + + E+E +E+ KK+ ++ +++ ++ EK K + K ++
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Query: 237 E 237
Sbjct: 151 A 151
Score = 47.8 bits (113), Expect = 6e-07
Identities = 12/78 (15%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ + +E E ++ ++E++K ++ + + +++ ++K KK ++ +++ E+ +K
Sbjct: 76 QADRLTQE--PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 255 EKKK-KKKKKEKKKKKDE 271
K + K ++ D
Sbjct: 134 NKINNRIADKAFYQQPDA 151
Score = 39.4 bits (91), Expect = 4e-04
Identities = 11/64 (17%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKK-KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+E + K +E+++K+ ++ + K +++ ++K +K E+ +++ ++ +K K
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 272 GRRR 275
R
Sbjct: 138 NRIA 141
Score = 27.0 bits (59), Expect = 6.2
Identities = 5/50 (10%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 157 KREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEE 206
+ +LE + R+ ++ K K + ++ ++ +
Sbjct: 108 MEQEWREKAKKDLEEWNQ-----RQSEQVEKNKINNRIADKAFYQQPDAD 152
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 57.9 bits (140), Expect = 1e-09
Identities = 22/101 (21%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEE--EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
+ R ++++ + + E E+EEE+ ++ + EKKK +++ +E+ +E++
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++K + +K K KK E+ + + K K++K E
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010
Score = 56.0 bits (135), Expect = 4e-09
Identities = 17/94 (18%), Positives = 49/94 (52%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K +++ + + + + EE K+++ +E E + +++E++ ++ + +KKK
Sbjct: 894 KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+++ E++ ++EE ++K + +K K K
Sbjct: 954 QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Score = 56.0 bits (135), Expect = 4e-09
Identities = 15/95 (15%), Positives = 49/95 (51%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + + + +++E EE E + + +++E++ ++ + EKKK +++ ++
Sbjct: 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ ++++ ++K + EK K KK ++ ++
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997
Score = 55.6 bits (134), Expect = 6e-09
Identities = 13/95 (13%), Positives = 49/95 (51%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K +++ + + EE + ++++ E+ + + + ++E+++ ++ + +KKK
Sbjct: 893 EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+++ +++ +EE+ +K + +K K +
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Score = 55.6 bits (134), Expect = 6e-09
Identities = 14/93 (15%), Positives = 49/93 (52%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K + + + + K++E +E + + + +++E++ ++ + EKKK +++
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ +++ +E++ +++ + EK K +K +
Sbjct: 959 DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Score = 55.6 bits (134), Expect = 6e-09
Identities = 18/93 (19%), Positives = 48/93 (51%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K++ + R +EEEE+ ++ + EKKK +++ E++ +E++ ++K + +K
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K K+ + + + K K+++ +++
Sbjct: 980 TADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Score = 54.8 bits (132), Expect = 1e-08
Identities = 15/95 (15%), Positives = 55/95 (57%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ +K + ++ +E+ + E E E ++ + + K+++ +E E + + ++++
Sbjct: 881 KELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE 940
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+ ++ + +KKK +++ + +++ +++E ++K +
Sbjct: 941 ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Score = 54.5 bits (131), Expect = 1e-08
Identities = 16/95 (16%), Positives = 49/95 (51%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ K +++ + + E EE + K+++ E+ + + ++E+++ ++ +
Sbjct: 889 QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQA 948
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
EKKK +++ +E+ ++E+ ++K + +K D
Sbjct: 949 EKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983
Score = 53.7 bits (129), Expect = 2e-08
Identities = 20/105 (19%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK----------KEKK 225
++E + + ++ K ++++ E E ++ E+K + +EK ++K E+
Sbjct: 855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ + KK++ E+ + E + ++EE++ ++ + +KKK +++ D
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959
Score = 53.3 bits (128), Expect = 3e-08
Identities = 21/95 (22%), Positives = 46/95 (48%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++E R Q+ + K+K +++ + EE+ +EE+ +K + +K + KK + +
Sbjct: 938 EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K KE+K +E +++EK K +
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Score = 52.1 bits (125), Expect = 8e-08
Identities = 18/94 (19%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEE--EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K+E + R ++EE + + EKK+ +++ E++ E+++ ++K + +K
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ KK + + +++ K K++K +E+
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015
Score = 51.4 bits (123), Expect = 2e-07
Identities = 11/95 (11%), Positives = 46/95 (48%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + + + ++ + E++K +++ + +++ ++E+ +K + +K K KK +
Sbjct: 930 HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +++ K +++K +++ ++E
Sbjct: 990 DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024
Score = 51.0 bits (122), Expect = 2e-07
Identities = 20/93 (21%), Positives = 44/93 (47%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E R++ + K + + K+ E +++ + KE+K E++ ++E
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+K K K K K E + + + KKE+K +++
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057
Score = 49.4 bits (118), Expect = 6e-07
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK----------EKKKKEKKK 226
+ R+K + K K ++ E + E++ + KE+K ++E+K
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ K K K E + E + KKEEK +++ +K K+K + + D +
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Score = 49.4 bits (118), Expect = 6e-07
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEK-KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ E++K +++ + + EEEE +K + EK K KK E + + K K++
Sbjct: 947 QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K +++ + E++++ K K K K +
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042
Score = 49.1 bits (117), Expect = 9e-07
Identities = 13/99 (13%), Positives = 53/99 (53%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E + ++ + +E+ +E+ + E + + E+ + + +K++ ++ + +
Sbjct: 875 KAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEA 934
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+++++ ++ + EKKK +++ +E+ ++++ R++
Sbjct: 935 RIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Score = 46.0 bits (109), Expect = 7e-06
Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK-------KKEKK 229
E + + K ++ ++ + EE++K K K K K + KKE+K
Sbjct: 994 IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEK 1053
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+++ +K K+K + E E+ + + + + K + KK+E
Sbjct: 1054 SRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095
Score = 45.6 bits (108), Expect = 1e-05
Identities = 20/91 (21%), Positives = 42/91 (46%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E + + K K K + E E K+E+K ++ EK K K + E ++ + + +
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ K + KK+EE + + + + +K
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNN 1113
Score = 44.4 bits (105), Expect = 2e-05
Identities = 18/94 (19%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E+ K++ ++ E + + E K + KKE++ + + E +K K+
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118
Query: 239 KKKKKEKKKKKEEKKKEKKKKKK-KKEKKKKKDE 271
++ + +E+ + EK + K +K+K+ +E
Sbjct: 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152
Score = 44.1 bits (104), Expect = 4e-05
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK-------KKEKKK 230
K+ K R+ K KRK E E + ++ + + + E K + KKE+ + E +
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+K KK ++ E ++ E +K + K +K+K+D
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
Score = 42.1 bits (99), Expect = 1e-04
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK--EKKKKKKK 234
+++ ++R +EEE+ + K + K E + + + KKE+K E +K K+K
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ + E+ + + + E K + KKE++ + R
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Score = 41.7 bits (98), Expect = 2e-04
Identities = 15/94 (15%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K + ++ + + + E+E ++ KK ++ E +++ + EK + K +K+
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKI-RELESHISDLQEDLESEKAARNKAEKQ 1145
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ +E + K E + ++E + +
Sbjct: 1146 KRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
Score = 41.4 bits (97), Expect = 2e-04
Identities = 19/93 (20%), Positives = 40/93 (43%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K+ + K +E K E++ E++++ K K K K + + E
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ KK+EK +++ EK K K + + ++ +
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078
Score = 40.2 bits (94), Expect = 5e-04
Identities = 14/83 (16%), Positives = 37/83 (44%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + ++ K+ +E E + +E+ + EK K EK+K++ +E + K + +
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161
Query: 237 EKKKKKKEKKKKKEEKKKEKKKK 259
+ +++ + K+ K
Sbjct: 1162 DTLDTTATQQELRGSDYKDDDDK 1184
Score = 37.1 bits (86), Expect = 0.006
Identities = 16/97 (16%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKE-EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K + K + + + ++EEK +E ++ K+K + + ++ E + + + K +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
Query: 236 KEKKKKKKEKKKKKEEKKKEKKK-KKKKKEKKKKKDE 271
+K+++ + + E++ +K KK +E + +
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 55.2 bits (132), Expect = 7e-09
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 193 KKEEEEKEEEKKEEKKKE-----KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ EE +E ++ + K + K+ KK++ E++KKK+ ++++K+++ KK
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKG 856
Query: 248 KKEEKKKEKKKKKKKKEKKKKK 269
KE K+ +++ K K K K
Sbjct: 857 IKETKENDEEFYKNKYSSKPYK 878
Score = 53.3 bits (127), Expect = 3e-08
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
R + R +K KKE+ EEEKK+E ++++K+ + +K KE K+ ++ K K K K
Sbjct: 820 RAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKV 879
Query: 244 E 244
+
Sbjct: 880 D 880
Score = 52.9 bits (126), Expect = 4e-08
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ K ++ ++EK ++++KK+ ++KEK+++ KK K+ K+ +E K K K
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYS---SK 875
Query: 250 EEKKKEKKKKKKKKEKKKKKDEGRR 274
K + ++ + + R
Sbjct: 876 PYKVDNMTRILPQQSRYISFIKDDR 900
Score = 51.4 bits (122), Expect = 2e-07
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+ E+ K+ EK + K + KK KK+K +++KKKE ++K++E++ KK
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKG 856
Query: 259 KKKKKEKKKKKDE 271
K+ KE ++ +
Sbjct: 857 IKETKENDEEFYK 869
Score = 49.8 bits (118), Expect = 5e-07
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+E KE +K + K + KK KK+K +++K+K+ +++EK++E KK
Sbjct: 798 MYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGI 857
Query: 262 KKEKKKKKDEGRRR 275
K+ K+ ++ + +
Sbjct: 858 KETKENDEEFYKNK 871
Score = 47.9 bits (113), Expect = 2e-06
Identities = 16/73 (21%), Positives = 40/73 (54%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ K + ++ +KE+ EE+KK++ +EK+KE++ +K ++ K+ ++ K K + K
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYK 878
Query: 248 KKEEKKKEKKKKK 260
+ ++ +
Sbjct: 879 VDNMTRILPQQSR 891
Score = 45.6 bits (107), Expect = 1e-05
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
+ K ++ K + K+K +E+E++ E K+ K+ K+ +++ K K K K
Sbjct: 824 RAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVD 880
Score = 45.2 bits (106), Expect = 1e-05
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ ++ KE +K + K + KK KK++ ++E+KK+ ++K+K+++ KK
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKG 856
Query: 269 KDEG 272
E
Sbjct: 857 IKET 860
Score = 41.3 bits (96), Expect = 2e-04
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+ E+ K+ EK + K + +K KK+K +++++K+ E+K+K+++ KK
Sbjct: 797 RMYEEASGKEVEKVAT-AVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKK 855
Query: 267 KKKDEG 272
K+
Sbjct: 856 GIKETK 861
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 51.8 bits (124), Expect = 8e-08
Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK----KKEKKKKEKKKEKK 229
+ + + EE K++++K+KK + +++ KE
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+ ++ + + KE+ + E+ + KK+KKKKK G
Sbjct: 66 EVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 48.4 bits (115), Expect = 1e-06
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK+RRK+++ K ++E +KE ++ + + E K++++ E
Sbjct: 36 KKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGA 95
Query: 237 EKKKKKKEKKKKKEEKKKE 255
KKKKK+KKK+ + + +
Sbjct: 96 TGKKKKKKKKKRGPKVQTD 114
Score = 48.0 bits (114), Expect = 2e-06
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+KR++KK+ + ++E KE + ++ E+ + K++ + E +
Sbjct: 36 KKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGA 95
Query: 247 KKKEEKKKEKKKKKKK 262
K++KKK+KK+ K
Sbjct: 96 TGKKKKKKKKKRGPKV 111
Score = 47.2 bits (112), Expect = 2e-06
Identities = 18/90 (20%), Positives = 43/90 (47%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
D E ++ +K+RR+K+K K E+E +K+ ++ + + ++K++
Sbjct: 22 DREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKER 81
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
++ + K+KKKKK+++ +
Sbjct: 82 DEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 46.8 bits (111), Expect = 3e-06
Identities = 18/82 (21%), Positives = 38/82 (46%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
E +++R++K+K K E+E +E + ++ ++ + KE+ + +
Sbjct: 30 TAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGD 89
Query: 237 EKKKKKKEKKKKKEEKKKEKKK 258
KKKKK++KK+ K
Sbjct: 90 GDGDGATGKKKKKKKKKRGPKV 111
Score = 41.1 bits (96), Expect = 2e-04
Identities = 13/78 (16%), Positives = 31/78 (39%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
EE +E+ +E K+K++KKKK K +++ K+
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Query: 255 EKKKKKKKKEKKKKKDEG 272
++ ++ ++ + K+
Sbjct: 65 DEVARQLERSALEDKERD 82
Score = 38.0 bits (88), Expect = 0.002
Identities = 14/77 (18%), Positives = 32/77 (41%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
EE ++++ ++ KKK++KKKK K +++ +E
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Query: 257 KKKKKKKEKKKKKDEGR 273
+ ++ E+ +D+ R
Sbjct: 65 DEVARQLERSALEDKER 81
Score = 37.6 bits (87), Expect = 0.003
Identities = 10/77 (12%), Positives = 33/77 (42%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
E+ + + ++E ++ KKK++KKK+ K +++ +++
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Query: 258 KKKKKKEKKKKKDEGRR 274
+ ++ ++ ++ R
Sbjct: 65 DEVARQLERSALEDKER 81
Score = 30.3 bits (68), Expect = 0.64
Identities = 15/79 (18%), Positives = 33/79 (41%)
Query: 150 TARPKDLKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK 209
A K +++ G E + R+ +R +++E E+++ +
Sbjct: 33 EAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDG 92
Query: 210 EKKKEKKKEKKKKEKKKEK 228
+ KKK+KKKK++ +
Sbjct: 93 DGATGKKKKKKKKKRGPKV 111
Score = 29.5 bits (66), Expect = 1.4
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
E +Q R ++++E++++ + + KKK+KKK+K+ + + +
Sbjct: 61 GASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 51.1 bits (121), Expect = 2e-07
Identities = 14/93 (15%), Positives = 49/93 (52%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K E + + ++K E+ E++++ ++ K+ +K E + + KE+++ K
Sbjct: 495 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 554
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+++++ ++ +KE + + + + + + +++K
Sbjct: 555 QEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587
Score = 48.0 bits (113), Expect = 2e-06
Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK--E 227
E KG + E Q K K + ++ E++K+ + + K E + K E
Sbjct: 449 EEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHE 508
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++K ++ E+K++ ++ K+ +K E + + KE+++
Sbjct: 509 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 552
Score = 41.1 bits (95), Expect = 3e-04
Identities = 18/109 (16%), Positives = 49/109 (44%)
Query: 161 LWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK 220
++ + ++ G R ++ + K+K EE ++ + EE + K K+
Sbjct: 414 IFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTD 473
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ + +K+K+ E ++ K E + + E ++K ++ ++K++
Sbjct: 474 AILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKER 522
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 47.9 bits (113), Expect = 1e-06
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K R+ + K + + +K + K +EK KK +KK KK KK KK
Sbjct: 333 KTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKD 270
KK KK KK ++K ++
Sbjct: 393 KKAAATKKPAADKKPAEKKPTTEE 416
Score = 45.6 bits (107), Expect = 9e-06
Identities = 22/86 (25%), Positives = 39/86 (45%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K RR ++ K + + ++ + + +++ KK + KK +K KK K+
Sbjct: 333 KTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKK 267
KK KK K+ +KK E+KK
Sbjct: 393 KKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 44.9 bits (105), Expect = 2e-05
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
NL K + +R ++ + + + E K E+K K+ ++K+ KK
Sbjct: 321 NLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKT 380
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
KK KK KK KK +KK +KK +++K
Sbjct: 381 VGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 44.9 bits (105), Expect = 2e-05
Identities = 21/100 (21%), Positives = 39/100 (39%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K + K+ K R K + ++ ++ K K + K + K ++K
Sbjct: 307 KKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKG 366
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+K ++KK KK +K K+ KK KK + +
Sbjct: 367 VPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKK 406
Score = 44.1 bits (103), Expect = 3e-05
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ R+ R+ + + +K + K +EK KK +KK KK KK +K
Sbjct: 333 KTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKK 268
K+ K+ +K +KK ++KK
Sbjct: 393 KKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 43.7 bits (102), Expect = 3e-05
Identities = 21/95 (22%), Positives = 38/95 (40%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK K R K + + ++ K + + +K + + +++ KK ++
Sbjct: 315 KKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRR 374
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K KK KK K+ +K KK KK E
Sbjct: 375 KKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAE 409
Score = 40.2 bits (93), Expect = 5e-04
Identities = 22/96 (22%), Positives = 38/96 (39%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R+K RR K+ K + K + ++ K K + + + K E+K
Sbjct: 306 RKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEK 365
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K ++K+ KK KK KK KK ++
Sbjct: 366 GVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Score = 39.1 bits (90), Expect = 0.001
Identities = 19/96 (19%), Positives = 35/96 (36%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
++ RR +K K + + + ++ + K K + K +EK
Sbjct: 307 KKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKG 366
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+ ++KK +K KK KK KK +
Sbjct: 367 VPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPA 402
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 46.3 bits (109), Expect = 5e-06
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+ +R K K KE E++ EK + KK + EKKK + KK+ ++ K++K
Sbjct: 343 RQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTA 402
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKK 262
+ + + + + K+ K+KK
Sbjct: 403 AELLQSQGSQAGGSQTLKRDKEKK 426
Score = 46.3 bits (109), Expect = 5e-06
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KKE ++ ++ K K+ E ++ E++ EK KK + EKKK E KK+ +
Sbjct: 337 KKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAF 396
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+++K E + + + + K+ KEKK
Sbjct: 397 KQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
Score = 45.9 bits (108), Expect = 7e-06
Identities = 27/107 (25%), Positives = 52/107 (48%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
LE K + + K+ E E +KKEE+ ++ ++ KEK+ + K+ EK
Sbjct: 303 LEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEK 362
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ +K + KK + EKKK +++KK + K++K + + +
Sbjct: 363 ELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQ 409
Score = 45.5 bits (107), Expect = 9e-06
Identities = 20/95 (21%), Positives = 51/95 (53%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ KR + ++++EE ++ ++ K+KE + ++ +KE ++ + KK +
Sbjct: 317 PFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQ 376
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++KKK ++KKK +++ K++K E + +
Sbjct: 377 DEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGS 411
Score = 45.1 bits (106), Expect = 1e-05
Identities = 23/103 (22%), Positives = 51/103 (49%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Y+ K E + K +E E ++ E + +KKE++ + ++ KEK+ +
Sbjct: 298 YRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAEL 357
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+ +++ +K ++ KK + +K+K + KKK + +R+
Sbjct: 358 KEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRK 400
Score = 44.7 bits (105), Expect = 2e-05
Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK--KK 234
+ ++K+ ++ ++ +E+E E ++ E++ EK KK + ++KK E KKK +
Sbjct: 333 GELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDE 392
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K++K + + + + + K++K+KK
Sbjct: 393 VNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
Score = 40.1 bits (93), Expect = 5e-04
Identities = 14/75 (18%), Positives = 36/75 (48%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
E + + E+ + R +K ++E++K E+KK+ E K+++ + + +
Sbjct: 352 EKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGS 411
Query: 230 KKKKKKKEKKKKKKE 244
+ + K+ K+K+
Sbjct: 412 QAGGSQTLKRDKEKK 426
Score = 37.8 bits (87), Expect = 0.003
Identities = 15/92 (16%), Positives = 50/92 (54%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
RR + + ++ + + + ++ + K + + ++K++E ++ ++ ++K+ +
Sbjct: 297 LYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAE 356
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++ +K+ +K ++ KK + EKKK +D+ +
Sbjct: 357 LKEAEKELHEKFDRLKKLHQDEKKKLEDKKKS 388
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 45.2 bits (106), Expect = 9e-06
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ + E KK K ++ + K+ K K K KK K +K K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Query: 254 KEKKKKK------KKKEKKKKK 269
+K K K KK K
Sbjct: 310 VDKSGMKSIDAFFGAKNKKTGK 331
Score = 44.4 bits (104), Expect = 2e-05
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ K + ++ K + + KE K K+ K KK K +K K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Query: 247 KKKEEKKKEKK--KKKKKKEKK 266
K K K KK K
Sbjct: 310 VDKSGMKSIDAFFGAKNKKTGK 331
Score = 42.1 bits (98), Expect = 9e-05
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 155 DLKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKE 214
L +++ D+L K + +K K E E +E+ + K+ K
Sbjct: 235 GLISDYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTG 294
Query: 215 KKKEKKKKEKKKEKKKKKKKKKE-----KKKKKKEKK 246
KK K +K K K K K KK K
Sbjct: 295 KKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 41.4 bits (96), Expect = 2e-04
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ + + ++ K ++ E K++ K K K +K K ++ K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Query: 242 KKEKKKKKEE---KKKEKKKKK 260
+ K + K KK K
Sbjct: 310 VDKSGMKSIDAFFGAKNKKTGK 331
Score = 39.4 bits (91), Expect = 7e-04
Identities = 18/74 (24%), Positives = 27/74 (36%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+E ++ K K E KK K ++ + K+ K K K KK K
Sbjct: 243 KELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTA 302
Query: 256 KKKKKKKKEKKKKK 269
+K K +K K
Sbjct: 303 AQKALAKVDKSGMK 316
Score = 38.3 bits (88), Expect = 0.002
Identities = 16/71 (22%), Positives = 23/71 (32%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+E + K K E KK K + + ++ K K K KK K
Sbjct: 242 PKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMT 301
Query: 259 KKKKKEKKKKK 269
+K K K
Sbjct: 302 AAQKALAKVDK 312
Score = 36.7 bits (84), Expect = 0.006
Identities = 15/76 (19%), Positives = 24/76 (31%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KE + + + + KK K + + K+ K K K KK +
Sbjct: 242 PKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMT 301
Query: 253 KKEKKKKKKKKEKKKK 268
+K K K K
Sbjct: 302 AAQKALAKVDKSGMKS 317
Score = 35.2 bits (80), Expect = 0.015
Identities = 13/65 (20%), Positives = 20/65 (30%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K K + K+ K + + K+ K K + KK K +K K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Query: 268 KKDEG 272
G
Sbjct: 310 VDKSG 314
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 45.2 bits (106), Expect = 1e-05
Identities = 21/97 (21%), Positives = 56/97 (57%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+E R++ K K+ + E+ E + KE+ +K K E + +++ ++ KK + + K+ +
Sbjct: 320 MEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELE 379
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
EK+++ +++K E +++ +++ + +K K +G+
Sbjct: 380 EKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
Score = 41.0 bits (95), Expect = 3e-04
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK-KKKKKEKKKKK 242
+ + + K + EEE++E K KK E + E+ + K KEK +K K + E +++
Sbjct: 305 NNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRH 364
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ KK E + KE ++K+++ E +K E ++R
Sbjct: 365 EQMKKNLEAQHKELEEKRRQFEDEKANWEAQQR 397
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 44.1 bits (103), Expect = 1e-05
Identities = 14/74 (18%), Positives = 37/74 (50%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
R +E E + +EE++K ++ K +++ +EK KK ++ +++ ++ +K K
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 152
Query: 251 EKKKEKKKKKKKKE 264
+ +K ++
Sbjct: 153 NRIADKAFYQQPDA 166
Score = 43.0 bits (100), Expect = 3e-05
Identities = 12/57 (21%), Positives = 34/57 (59%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
++ R+ +RKR +E + + ++E +++ KK+ ++ +++ ++ EK K + +K
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
Score = 41.8 bits (97), Expect = 8e-05
Identities = 13/76 (17%), Positives = 38/76 (50%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ +E + K +E+++++ +E K E++ ++K KK+ ++ + + ++ E+ K
Sbjct: 92 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 151
Query: 255 EKKKKKKKKEKKKKKD 270
+ K ++ D
Sbjct: 152 NNRIADKAFYQQPDAD 167
Score = 39.9 bits (92), Expect = 3e-04
Identities = 11/86 (12%), Positives = 37/86 (43%)
Query: 166 GDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
G Y ++ RK + ++ + +E + + +++ +EK K+ ++ +
Sbjct: 81 GPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ 140
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEE 251
++ ++ +K K + K ++ +
Sbjct: 141 RQSEQVEKNKINNRIADKAFYQQPDA 166
Score = 39.9 bits (92), Expect = 4e-04
Identities = 10/71 (14%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ ++ E ++ ++E++K ++ + K +++ +++ KK +E +++ E+ ++
Sbjct: 90 AQADRLTQEPESIRKWREEQRKRLQELDAA-SKVMEQEWREKAKKDLEEWNQRQSEQVEK 148
Query: 256 KKKKKKKKEKK 266
K + +K
Sbjct: 149 NKINNRIADKA 159
Score = 38.0 bits (87), Expect = 0.002
Identities = 13/74 (17%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK--KEKKKKKKEKKKKKEEKK 253
+ + ++ E ++ ++E++K+ ++ + K ++ +EK KK E+ +++ ++
Sbjct: 86 YAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 145
Query: 254 KEKKKKKKKKEKKK 267
EK K + K
Sbjct: 146 VEKNKINNRIADKA 159
Score = 36.1 bits (82), Expect = 0.006
Identities = 10/81 (12%), Positives = 38/81 (46%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+E + + ++ + ++ ++E++K+ ++ K +++ ++K +K
Sbjct: 76 FQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL 135
Query: 255 EKKKKKKKKEKKKKKDEGRRR 275
E+ +++ ++ +K K R
Sbjct: 136 EEWNQRQSEQVEKNKINNRIA 156
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 44.0 bits (104), Expect = 2e-05
Identities = 5/56 (8%), Positives = 18/56 (32%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ E + + E +E + + + E+ K + + ++ +
Sbjct: 182 EAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 44.0 bits (104), Expect = 2e-05
Identities = 7/60 (11%), Positives = 20/60 (33%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
EE E E + + E +E + + + ++ K + + + + +
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 43.2 bits (102), Expect = 3e-05
Identities = 7/63 (11%), Positives = 19/63 (30%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
R + E E + + + E+ E + ++ K + ++ E
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 248 KKE 250
+
Sbjct: 235 DAQ 237
Score = 43.2 bits (102), Expect = 3e-05
Identities = 7/63 (11%), Positives = 19/63 (30%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
R EE + E + + + E+ + + ++ K E + +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 252 KKK 254
+
Sbjct: 235 DAQ 237
Score = 42.4 bits (100), Expect = 6e-05
Identities = 4/63 (6%), Positives = 21/63 (33%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
R +E E + + + + ++ + + ++ K + + + +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 250 EEK 252
+ +
Sbjct: 235 DAQ 237
Score = 42.0 bits (99), Expect = 8e-05
Identities = 7/63 (11%), Positives = 20/63 (31%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ EE E E + + + ++ E E ++ K + + ++
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 253 KKE 255
+
Sbjct: 235 DAQ 237
Score = 40.1 bits (94), Expect = 3e-04
Identities = 7/61 (11%), Positives = 19/61 (31%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
EE + E + + + +E + + +E K + E + +
Sbjct: 177 TAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
Query: 258 K 258
+
Sbjct: 237 Q 237
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 44.1 bits (105), Expect = 2e-05
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ E EE +EE+ +++KE ++ E+++E+KK K KK EK
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 43.7 bits (104), Expect = 2e-05
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ EE +EEE +E+K++ E E++++EKK + KK +K +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 42.6 bits (101), Expect = 5e-05
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
K E +E ++E+ +++KE E E+++++KK K KK +K
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 41.8 bits (99), Expect = 1e-04
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ + E+ E+++ K+EK+ + ++E+++KK K K+ +K +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 41.0 bits (97), Expect = 2e-04
Identities = 9/47 (19%), Positives = 28/47 (59%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K + ++ +++E K++K+ + + +E++++K+ K K+ +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 41.0 bits (97), Expect = 2e-04
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K E +E +E++ K++KE ++ +++++EKK K K+ +K +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 40.7 bits (96), Expect = 2e-04
Identities = 10/49 (20%), Positives = 29/49 (59%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K E ++ ++E+ +++K++ E +++++++K K KK +K +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 40.3 bits (95), Expect = 4e-04
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
K + + EEE+ ++++E ++ +++E++KK K K+ +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 39.9 bits (94), Expect = 4e-04
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
+ + EEEE +E+KE+ E E+++E+KK + KK +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 39.5 bits (93), Expect = 5e-04
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
K + E+ ++++ +++K+ + + EE+++EKK K KK EK
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 39.5 bits (93), Expect = 6e-04
Identities = 9/47 (19%), Positives = 28/47 (59%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K + ++ ++++ K++K++ + +++E++KK K K+ +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 38.3 bits (90), Expect = 0.001
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K + ++ ++++ K++++ + +++EE+KK K KK +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 37.6 bits (88), Expect = 0.003
Identities = 11/50 (22%), Positives = 29/50 (58%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K + +E +E++ K++K++ + +++++E+K K KK +K +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 37.2 bits (87), Expect = 0.003
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K E +E +E++ +++KE + +E++++KK K KK E+ +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 37.2 bits (87), Expect = 0.003
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K + ++ ++E+ K++++ E +E++++KK K KK +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 37.2 bits (87), Expect = 0.003
Identities = 10/46 (21%), Positives = 29/46 (63%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K + ++ E+++ KE+K+ +++ ++++++KK K KK ++
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 36.4 bits (85), Expect = 0.006
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
K + + + K+E+E+ ++E E+++E+KK K K+ +K
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 35.6 bits (83), Expect = 0.012
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
K + + ++ +E++E+ +E E+++E+KK K KK +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 31.0 bits (71), Expect = 0.37
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
K E + K +++ ++E E++EE+KK K K+ +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 44.0 bits (103), Expect = 3e-05
Identities = 18/86 (20%), Positives = 40/86 (46%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+R + E+ + K + KKE+ + +++ K + + K K KK + KKK
Sbjct: 458 HQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAV 517
Query: 246 KKKKEEKKKEKKKKKKKKEKKKKKDE 271
++ +E+ K + + ++E K+
Sbjct: 518 QRLEEQLMKLEVQATDREENKQIALG 543
Score = 43.2 bits (101), Expect = 5e-05
Identities = 15/87 (17%), Positives = 39/87 (44%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
++ + K ++E+ + +++ K + + K+ K K+ + KKK ++ +E+ K
Sbjct: 467 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMK 526
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ + +EE K+ K +
Sbjct: 527 LEVQATDREENKQIALGTSKLNYLDPR 553
Score = 42.0 bits (98), Expect = 1e-04
Identities = 14/75 (18%), Positives = 34/75 (45%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ K+E+ + ++ K + + K K K+ + KKK ++ +++ K + + ++E
Sbjct: 478 DAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREEN 537
Query: 257 KKKKKKKEKKKKKDE 271
K+ K D
Sbjct: 538 KQIALGTSKLNYLDP 552
Score = 41.7 bits (97), Expect = 2e-04
Identities = 19/83 (22%), Positives = 36/83 (43%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K K + K + KKE+ ++ K + K K K KK + K+K ++ E++
Sbjct: 464 KTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ 523
Query: 247 KKKEEKKKEKKKKKKKKEKKKKK 269
K E + +++ K+ K
Sbjct: 524 LMKLEVQATDREENKQIALGTSK 546
Score = 41.3 bits (96), Expect = 3e-04
Identities = 16/85 (18%), Positives = 36/85 (42%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ ++ + + ++E+ + + + K K K + K +K E KKK ++ E
Sbjct: 462 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE 521
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKK 262
++ K E + E+ K+ K
Sbjct: 522 EQLMKLEVQATDREENKQIALGTSK 546
Score = 40.5 bits (94), Expect = 4e-04
Identities = 16/95 (16%), Positives = 44/95 (46%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+R + ++ + + + ++E+ + +++ K K K K+ K +K + KKK +
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 518
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ +++ K + + +E+ K+ K + R
Sbjct: 519 RLEEQLMKLEVQATDREENKQIALGTSKLNYLDPR 553
Score = 39.0 bits (90), Expect = 0.001
Identities = 14/90 (15%), Positives = 34/90 (37%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ + +K + + + K + K + K KK + KK+ + +++ K + +
Sbjct: 474 QTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATD 533
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++E K+ K + KK
Sbjct: 534 REENKQIALGTSKLNYLDPRITVAWCKKWG 563
Score = 38.2 bits (88), Expect = 0.002
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKK-KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ K EK + K KK++ + K K K K+ K KK + KKK +
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 518
Query: 253 KKEKKKKKKKKEKKKKKDEGRR 274
+ E++ K + + +++ +
Sbjct: 519 RLEEQLMKLEVQATDREENKQI 540
Score = 38.2 bits (88), Expect = 0.002
Identities = 17/90 (18%), Positives = 34/90 (37%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K K+ + R+ K + + K+ K K+ + KKK ++ E++ K + +
Sbjct: 472 NLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQA 531
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+E+ K+ K KK
Sbjct: 532 TDREENKQIALGTSKLNYLDPRITVAWCKK 561
Score = 37.4 bits (86), Expect = 0.004
Identities = 16/93 (17%), Positives = 39/93 (41%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K + +K++ +R K + + + K + KK + +KK ++ +E+ + + + ++
Sbjct: 476 KIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDRE 535
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E K+ K + KK +K
Sbjct: 536 ENKQIALGTSKLNYLDPRITVAWCKKWGVPIEK 568
Score = 31.3 bits (70), Expect = 0.34
Identities = 13/69 (18%), Positives = 30/69 (43%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
++ K +K + K KK++ + K K K ++ K +K + KKK +
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 518
Query: 267 KKKDEGRRR 275
+ +++ +
Sbjct: 519 RLEEQLMKL 527
Score = 28.6 bits (63), Expect = 2.4
Identities = 13/91 (14%), Positives = 35/91 (38%)
Query: 169 LEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
K K + + + K K+ + +++ + +++ K E + ++E K+ K
Sbjct: 487 ARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSK 546
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+ KK ++ K +++K
Sbjct: 547 LNYLDPRITVAWCKKWGVPIEKIYNKTQREK 577
Score = 28.6 bits (63), Expect = 2.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+ + E +K+ K+EK K K++ EK ++
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 28.2 bits (62), Expect = 3.6
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ K K K KK + K+KK KKEE++K K ++++ + K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
Score = 27.4 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ + E +K+ K+EK K K++ +K KE
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 27.4 bits (60), Expect = 6.3
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
K K K+K KK + + KKKK KK+E++K K ++++ E K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
Score = 27.4 bits (60), Expect = 7.0
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K K K + KK + KKKK KK+++++ K +EE+ E K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
Score = 27.0 bits (59), Expect = 8.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K + + +K+ KE+K K KE+ +K ++
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 27.0 bits (59), Expect = 9.1
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K K K K K+ + +KKK K+E++++ K ++++ + K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 42.0 bits (98), Expect = 1e-04
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ K +K K E E EE K ++ ++ +EKKKE K + +E ++ K+
Sbjct: 18 KEKLLQKAKAEGVESIEELK-KRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKEH 76
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKK 269
K K K EK K+K K
Sbjct: 77 KTTKMSNKSNEKSGNVLPKDKPYKT 101
Score = 33.6 bits (76), Expect = 0.059
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
E++ +EK +K K + E +E KK+ + ++KKK+ K ++ E+ +
Sbjct: 14 EDRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTN 73
Query: 257 KKKKKKKEKKKKK 269
K+ K K K
Sbjct: 74 KEHKTTKMSNKSN 86
Score = 32.4 bits (73), Expect = 0.15
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E++ +EK +K K + E ++ KK+ + ++KKKE K ++ ++ +
Sbjct: 14 EDRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTN 73
Query: 261 KKKEKKKKKD 270
K+ + K +
Sbjct: 74 KEHKTTKMSN 83
Score = 30.1 bits (67), Expect = 0.78
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 210 EKKKEKKKEKKKKEKKK---EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
++ KEK +K K E + E KK+ + E+KKK+ K E ++ + K
Sbjct: 15 DRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNK 74
Query: 267 KKKDE 271
+ K
Sbjct: 75 EHKTT 79
Score = 29.7 bits (66), Expect = 0.97
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 205 EEKKKEKKKEKKKEK--KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
E++ KEK +K K + + E+ K++ + ++K+K+ K + ++ E+ +
Sbjct: 14 EDRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTN 73
Query: 263 KEKKKKKDEGR 273
KE K K +
Sbjct: 74 KEHKTTKMSNK 84
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 41.3 bits (96), Expect = 2e-04
Identities = 9/81 (11%), Positives = 32/81 (39%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+++ ++ +++ K++ + K+ +++ + +K+ E KK K E
Sbjct: 293 EKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVG 352
Query: 251 EKKKEKKKKKKKKEKKKKKDE 271
++ +K + +
Sbjct: 353 TEQLVAEKIPENETTHHHHHH 373
Score = 39.8 bits (92), Expect = 6e-04
Identities = 14/97 (14%), Positives = 35/97 (36%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ R +R + E++ K + KK+++ K ++E + +KE
Sbjct: 274 RSRTPVELARRGNTLLQCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKE 333
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ KK K E+ ++ ++ + +
Sbjct: 334 NVDGVESKKAKIEDTSNVGTEQLVAEKIPENETTHHH 370
Score = 29.8 bits (66), Expect = 1.0
Identities = 10/59 (16%), Positives = 26/59 (44%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+++ + K + KKE + K+ +++ ++ EK+ + KK K ++
Sbjct: 293 EKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNV 351
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 40.9 bits (95), Expect = 2e-04
Identities = 15/89 (16%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ ++ K++RK +E + +++ + K+ + K+K E+ + +K + E+ +
Sbjct: 101 TKYSQEMKQERKMHFQE--GRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQ 158
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K EK K++ + ++ K +
Sbjct: 159 DINATKADVEKAKQQAHLRSHMAEESKNE 187
Score = 40.9 bits (95), Expect = 3e-04
Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK---EKKKKEKKKEKKKKKKKKK 236
+ + K++RK +E + +++ E K+ + K+K + ++ EK + ++ +
Sbjct: 101 TKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDI 160
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K EK K++ + ++ K +
Sbjct: 161 NATKADVEKAKQQAHLRSHMAEESKNE 187
Score = 35.8 bits (82), Expect = 0.009
Identities = 13/79 (16%), Positives = 38/79 (48%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ +E K+E+K ++ ++ +++ + K+ + K+K + ++ ++ + E ++
Sbjct: 101 TKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDI 160
Query: 257 KKKKKKKEKKKKKDEGRRR 275
K EK K++ R
Sbjct: 161 NATKADVEKAKQQAHLRSH 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 3e-04
Identities = 30/180 (16%), Positives = 51/180 (28%), Gaps = 71/180 (39%)
Query: 9 PISEP--SSPPINAGVGFAPPISLEDSARVCSRVPGLSFGQVRQCSL----FADHMASVG 62
P++ P S + A + +D + +SF + + S
Sbjct: 422 PVASPFHS--HLLVP---ASDLINKDLVK-----NNVSF---NAKDIQIPVYDTFDGSDL 468
Query: 63 RGAAESIAE--CQHQFRHH-RWNCSSGGPGAGGGGGGKSESTTAPSVLPPTLHIGSREAA 119
R + SI+E R +W E+TT
Sbjct: 469 RVLSGSISERIVDCIIRLPVKW-----------------ETTTQFKA------------- 498
Query: 120 FTHAI-----ATAGVVYAVARSCKDGSLPSCGCSRTARPKDLKREWLWGGCGDNLEYGYK 174
TH + +G+ R+ KDG+ G R L + +YG+K
Sbjct: 499 -THILDFGPGGASGLGVLTHRN-KDGT----GV-RVIVAGTLDI-------NPDDDYGFK 544
Score = 32.3 bits (73), Expect = 0.18
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 32/94 (34%)
Query: 20 AGVGFAPPISLEDSAR-VCSR-------VPGLSFGQVRQCSLFADHMASVGRG-AAESIA 70
A V +S+E V R VP G+ + A + V + E++
Sbjct: 1774 ADV-----MSIESLVEVVFYRGMTMQVAVPRDELGR-SNYGMIAINPGRVAASFSQEALQ 1827
Query: 71 E-CQHQFRHHRW-------NCSSGGPG-----AG 91
+ + W N AG
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNV----ENQQYVAAG 1857
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 41.0 bits (96), Expect = 3e-04
Identities = 11/93 (11%), Positives = 32/93 (34%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G+ +++ + R ++ E+EKE+ K + +K + + +EK +K
Sbjct: 184 GELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQK 243
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ + + + + +
Sbjct: 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVL 276
Score = 40.6 bits (95), Expect = 3e-04
Identities = 17/86 (19%), Positives = 39/86 (45%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
++ + + + EK +K E KE +K+ ++ E + K++ K + K+ +K
Sbjct: 146 SEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEK 205
Query: 250 EEKKKEKKKKKKKKEKKKKKDEGRRR 275
E++K K + K ++ G +
Sbjct: 206 EKEKLTKFVEYLDKVRRIFGRNGFQA 231
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 41.0 bits (96), Expect = 4e-04
Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK---------------------EKKKK 222
+ ++ + K+++ + + + + + KE +K K E
Sbjct: 1965 VQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAAN 2024
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
E K ++ + +K K++ +E ++ K + K K K
Sbjct: 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071
Score = 38.3 bits (89), Expect = 0.003
Identities = 15/94 (15%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE-----KKKKEKKKEKKKKKKKK 235
++Q R+ R + + +K+++ +E++ KK ++ + + K +
Sbjct: 1884 KRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSL 1943
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K ++ K ++ +K K+ + ++ E K+K
Sbjct: 1944 AQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKD 1977
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 40.2 bits (93), Expect = 4e-04
Identities = 16/88 (18%), Positives = 38/88 (43%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R R+R++ + ++ + + + + + ++KK+ K
Sbjct: 18 TAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPK 77
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ K KK K +EKKK++ K K ++++
Sbjct: 78 QPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 38.3 bits (88), Expect = 0.001
Identities = 18/90 (20%), Positives = 39/90 (43%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
R++R+ R + ++ + + + + +KK+ K+ K K
Sbjct: 24 RRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPK 83
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K K ++KKK++ K K K+++ K + D
Sbjct: 84 KPKPQEKKKKQPAKTKPGKRQRMALKLEAD 113
Score = 37.1 bits (85), Expect = 0.004
Identities = 16/70 (22%), Positives = 36/70 (51%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ + + + + ++KK+ K+ K KK K ++KKKK+ K K ++++ K + +
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Query: 264 EKKKKKDEGR 273
K ++G
Sbjct: 115 LFDVKNEDGD 124
Score = 35.6 bits (81), Expect = 0.011
Identities = 14/91 (15%), Positives = 39/91 (42%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ R+ R + ++ + + + + + +KK+ K+ K K
Sbjct: 24 RRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPK 83
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ K ++K+KK+ + K ++++ K E +
Sbjct: 84 KPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 35.2 bits (80), Expect = 0.016
Identities = 13/91 (14%), Positives = 39/91 (42%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ RR+ + + ++ + + + + ++K++ K+ K +
Sbjct: 24 RRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPK 83
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K K +++KKK+ + K K+++ K + +
Sbjct: 84 KPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 33.6 bits (76), Expect = 0.043
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G + +Q + + + ++KK+ K+ K K+ K ++KKKK+
Sbjct: 37 GLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPA 96
Query: 236 KEKKKKKKEKKKKKEEKK 253
K K K++ K E +
Sbjct: 97 KTKPGKRQRMALKLEADR 114
Score = 33.2 bits (75), Expect = 0.068
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ R Q R R R+K++ K+ K ++ K ++KK+K+ K K K++ K + +
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Query: 237 E 237
Sbjct: 115 L 115
Score = 29.4 bits (65), Expect = 1.2
Identities = 13/64 (20%), Positives = 32/64 (50%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
L G + R + ++K++ K+ + ++ K +EKKK++ + K K+++ K
Sbjct: 51 ALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKL 110
Query: 228 KKKK 231
+ +
Sbjct: 111 EADR 114
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 40.1 bits (93), Expect = 5e-04
Identities = 14/89 (15%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ ++ K++RK + K ++ + K+ + K++ E+ ++ + ++ EK
Sbjct: 108 ARYVQELKQERKSNFH--DGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA 165
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K EK +++ + + + + K D
Sbjct: 166 DINVTKADVEKARQQAQIRHQMAEDSKAD 194
Score = 37.7 bits (87), Expect = 0.002
Identities = 11/79 (13%), Positives = 33/79 (41%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ ++ KR+ E + KE ++ ++ ++ + K EK +++ + + + E
Sbjct: 130 QHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAE 189
Query: 238 KKKKKKEKKKKKEEKKKEK 256
K +K ++ +
Sbjct: 190 DSKADYSSILQKFNHEQHE 208
Score = 35.4 bits (81), Expect = 0.013
Identities = 13/75 (17%), Positives = 35/75 (46%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+E K+E+K +K ++ + K+ + K++ + K+ ++ E+ + K
Sbjct: 112 QELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTK 171
Query: 261 KKKEKKKKKDEGRRR 275
EK +++ + R +
Sbjct: 172 ADVEKARQQAQIRHQ 186
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 40.2 bits (93), Expect = 5e-04
Identities = 11/67 (16%), Positives = 29/67 (43%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K++ KK + + K++ K +K K KK + + ++ K +++
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIA 400
Query: 263 KEKKKKK 269
+ ++ K+
Sbjct: 401 QGQEIKE 407
Score = 39.4 bits (91), Expect = 0.001
Identities = 19/98 (19%), Positives = 37/98 (37%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
ER+K K K +++ +K E K K++ K +K K KK
Sbjct: 313 TTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKG 372
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K ++ + ++E + ++ K+ DE
Sbjct: 373 SQAWIAAFNKANEEAIAKARQEDADFIAQGQEIKEGDE 410
Score = 37.9 bits (87), Expect = 0.003
Identities = 15/96 (15%), Positives = 32/96 (33%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ +RK+ K K K++ KK + + K++ K +K K
Sbjct: 309 KVAGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKT 368
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK + K ++ K +++ +
Sbjct: 369 HKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQE 404
Score = 36.3 bits (83), Expect = 0.009
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK--KKKK 234
R+K + K K++ KK + + K++ K +K K K
Sbjct: 311 AGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHK 370
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K + K +E K +++ + ++ EG
Sbjct: 371 KGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIKEG 408
Score = 35.6 bits (81), Expect = 0.014
Identities = 13/72 (18%), Positives = 27/72 (37%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
KE+ K+ K KR+ + + K KK + K +E + +++
Sbjct: 336 AAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQED 395
Query: 233 KKKKEKKKKKKE 244
+ ++ KE
Sbjct: 396 ADFIAQGQEIKE 407
Score = 28.6 bits (63), Expect = 2.6
Identities = 13/76 (17%), Positives = 25/76 (32%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
E + K E + KK K + K++ +K + + K++
Sbjct: 300 NSNEVQSVVKVAGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATL 359
Query: 259 KKKKKEKKKKKDEGRR 274
K +K K K +
Sbjct: 360 KANRKAAKTHKKGSQA 375
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 39.7 bits (92), Expect = 5e-04
Identities = 16/88 (18%), Positives = 39/88 (44%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ ++ + KK +EE + + + + ++ K+ K ++++ KK+ +++
Sbjct: 105 KYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQRE 164
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
EK K +K + K +K K D
Sbjct: 165 IEKAAVKSKKATDTYKLYVEKYALAKAD 192
Score = 37.0 bits (85), Expect = 0.004
Identities = 15/83 (18%), Positives = 35/83 (42%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ + K+ + + + + + + +K KE K E+++ +K+ +++ +K
Sbjct: 110 QVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAA 169
Query: 237 EKKKKKKEKKKKKEEKKKEKKKK 259
K KK + K EK K
Sbjct: 170 VKSKKATDTYKLYVEKYALAKAD 192
Score = 35.1 bits (80), Expect = 0.015
Identities = 16/85 (18%), Positives = 35/85 (41%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E + + +K K + E + + + +K KE K ++++ +K+ +++ EK
Sbjct: 108 EEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEK 167
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKK 263
K +K + EK K
Sbjct: 168 AAVKSKKATDTYKLYVEKYALAKAD 192
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 39.4 bits (91), Expect = 6e-04
Identities = 12/61 (19%), Positives = 27/61 (44%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KK K ++K E+ E+ K K+K+ ++ +K+ E ++ + K+ +
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAG 73
Query: 268 K 268
Sbjct: 74 S 74
Score = 37.9 bits (87), Expect = 0.002
Identities = 11/68 (16%), Positives = 26/68 (38%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K+ K ++K E+ ++ K K+K+ + +KE + + + K+ K
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAG 73
Query: 264 EKKKKKDE 271
+
Sbjct: 74 SYYVEAQH 81
Score = 36.3 bits (83), Expect = 0.006
Identities = 9/69 (13%), Positives = 30/69 (43%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+K K +++ E+ E ++ ++K+ + +K+ + ++ + K++ K
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAG 73
Query: 250 EEKKKEKKK 258
+ + K
Sbjct: 74 SYYVEAQHK 82
Score = 35.6 bits (81), Expect = 0.011
Identities = 11/66 (16%), Positives = 28/66 (42%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K ++K E+ ++ +K K+K ++ +K+ + ++ + K+ K
Sbjct: 17 KAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYY 76
Query: 263 KEKKKK 268
E + K
Sbjct: 77 VEAQHK 82
Score = 35.2 bits (80), Expect = 0.016
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK K ++K ++ + +K K+K+ ++ +K+ + ++ + +R
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRD 68
Score = 33.6 bits (76), Expect = 0.042
Identities = 9/72 (12%), Positives = 31/72 (43%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E + ++ + +++ ++ E+ K K+K ++ +KE + ++ + K++
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDA 69
Query: 239 KKKKKEKKKKKE 250
K + +
Sbjct: 70 KAAGSYYVEAQH 81
Score = 33.6 bits (76), Expect = 0.046
Identities = 8/60 (13%), Positives = 28/60 (46%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK K +++ ++ ++ +K K+K+ ++ +++ + ++ + K+D
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAG 73
Score = 33.6 bits (76), Expect = 0.051
Identities = 6/68 (8%), Positives = 30/68 (44%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
KK + +++ ++ E+ ++ ++K+ ++ +K+ + ++ + ++ K
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAG 73
Query: 263 KEKKKKKD 270
+ +
Sbjct: 74 SYYVEAQH 81
Score = 33.3 bits (75), Expect = 0.055
Identities = 11/61 (18%), Positives = 29/61 (47%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K+ K ++K E+ ++ +K ++K+ ++ +K+ E ++ + K+ K G
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAG 73
Query: 273 R 273
Sbjct: 74 S 74
Score = 31.7 bits (71), Expect = 0.22
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E + KK K ++K ++ ++ + ++K+ + + E
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETA 58
Score = 30.9 bits (69), Expect = 0.36
Identities = 12/66 (18%), Positives = 29/66 (43%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+K E + K+ K ++K ++ E+ +K K+K+ + +K+ E ++
Sbjct: 2 AAEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERN 61
Query: 270 DEGRRR 275
+R
Sbjct: 62 IIQAKR 67
Score = 29.8 bits (66), Expect = 0.83
Identities = 11/65 (16%), Positives = 26/65 (40%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+++ ++ + RK +EK E +K+ + E+ + K++ K
Sbjct: 18 AQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYV 77
Query: 237 EKKKK 241
E + K
Sbjct: 78 EAQHK 82
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 39.6 bits (93), Expect = 8e-04
Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 29/129 (22%)
Query: 176 GKKERRKQRRRKR-----------KRKRKKEEE------------------EKEEEKKEE 206
K+ + R ++ KK E+ K K E
Sbjct: 776 DKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKRE 835
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
E EK +++ + + + K++KK +K + KK +
Sbjct: 836 PFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWAT 895
Query: 267 KKKDEGRRR 275
K
Sbjct: 896 TKSVYLGSN 904
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 37.9 bits (88), Expect = 0.001
Identities = 10/74 (13%), Positives = 28/74 (37%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+K+ EE + + ++ + K + EK ++ + ++ + ++
Sbjct: 105 KKRPEEVEAWLDDDTQEITRGTVKLLREFLDEKGRDPNTVDAFNGQTDAERDAEAGDGQD 164
Query: 252 KKKEKKKKKKKKEK 265
+ + K KEK
Sbjct: 165 GEDGDQDGKDAKEK 178
Score = 37.1 bits (86), Expect = 0.002
Identities = 8/78 (10%), Positives = 26/78 (33%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
++ EE + ++ + K +E EK + + ++ +
Sbjct: 101 VTAFKKRPEEVEAWLDDDTQEITRGTVKLLREFLDEKGRDPNTVDAFNGQTDAERDAEAG 160
Query: 252 KKKEKKKKKKKKEKKKKK 269
++ + + + K+K
Sbjct: 161 DGQDGEDGDQDGKDAKEK 178
Score = 34.8 bits (80), Expect = 0.015
Identities = 9/78 (11%), Positives = 30/78 (38%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+KR + E ++ ++ + K + ++K ++ + E+ +
Sbjct: 101 VTAFKKRPEEVEAWLDDDTQEITRGTVKLLREFLDEKGRDPNTVDAFNGQTDAERDAEAG 160
Query: 244 EKKKKKEEKKKEKKKKKK 261
+ + ++ + K K+K
Sbjct: 161 DGQDGEDGDQDGKDAKEK 178
Score = 33.7 bits (77), Expect = 0.035
Identities = 8/76 (10%), Positives = 23/76 (30%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++R + +E + E EK ++ + ++ +
Sbjct: 103 AFKKRPEEVEAWLDDDTQEITRGTVKLLREFLDEKGRDPNTVDAFNGQTDAERDAEAGDG 162
Query: 237 EKKKKKKEKKKKKEEK 252
+ + + K +EK
Sbjct: 163 QDGEDGDQDGKDAKEK 178
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 38.7 bits (89), Expect = 0.001
Identities = 17/99 (17%), Positives = 33/99 (33%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ RK+ + K +R + +EE ++ + KK+ K E KK + K
Sbjct: 186 ERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKVEAPK 245
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K + + K K + K
Sbjct: 246 KVDPKAAKTTPAATKATPAATKVAPKTQAAKTTTPAPAV 284
Score = 36.8 bits (84), Expect = 0.006
Identities = 20/90 (22%), Positives = 30/90 (33%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ R+K + K + K KEE +K + KK+ K + KK E
Sbjct: 185 PERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKVEAP 244
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KK K K + K K +
Sbjct: 245 KKVDPKAAKTTPAATKATPAATKVAPKTQA 274
Score = 36.4 bits (83), Expect = 0.006
Identities = 19/98 (19%), Positives = 31/98 (31%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K K + QR K +++ E+ E KK+ K + K+ + KK K
Sbjct: 191 KKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKVEAPKKVDPK 250
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K + K + K K +
Sbjct: 251 AAKTTPAATKATPAATKVAPKTQAAKTTTPAPAVKDAK 288
Score = 31.8 bits (71), Expect = 0.21
Identities = 13/75 (17%), Positives = 25/75 (33%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K++R + + ++ E KK + K K + K K + K
Sbjct: 219 WKKQRAAKAHAASAPVVEAPKKVEAPKKVDPKAAKTTPAATKATPAATKVAPKTQAAKTT 278
Query: 237 EKKKKKKEKKKKKEE 251
K+ KK ++
Sbjct: 279 TPAPAVKDAKKTTKK 293
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 38.3 bits (88), Expect = 0.001
Identities = 12/99 (12%), Positives = 46/99 (46%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ ++ R++ K + KE++ E + ++ + + ++ E + + + +
Sbjct: 106 KRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQAS 165
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K++E++++ E+ + K ++ + + ++ R+
Sbjct: 166 PGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQ 204
Score = 36.0 bits (82), Expect = 0.009
Identities = 9/89 (10%), Positives = 43/89 (48%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+R + ++ RK+ +E+ +E+K + + + + + + + + + + ++ +
Sbjct: 104 AAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQ 163
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K++E+++ +++ + K ++ +
Sbjct: 164 ASPGPSKQQERRRRSREEAQAKAQEAEAL 192
Score = 36.0 bits (82), Expect = 0.009
Identities = 9/81 (11%), Positives = 37/81 (45%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ E EK ++ KE+ +++K + + + + + ++ + + + + ++ +
Sbjct: 104 AAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQ 163
Query: 255 EKKKKKKKKEKKKKKDEGRRR 275
K++E++++ E +
Sbjct: 164 ASPGPSKQQERRRRSREEAQA 184
Score = 29.8 bits (66), Expect = 0.96
Identities = 6/88 (6%), Positives = 37/88 (42%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K + + R+ + + + ++ + + E + K++++ ++ +++ + +
Sbjct: 126 KRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAK 185
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
++ + + E ++ + K++
Sbjct: 186 AQEAEALYQACVREANARQQDLEIAKQR 213
Score = 29.4 bits (65), Expect = 1.2
Identities = 8/104 (7%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKK---------EEKKKEKKKEKKKEKKKKEKKKE 227
++ RK+ + + +++K+ E + ++ E+ + + + +
Sbjct: 110 IEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPS 169
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+++++++ ++ + K ++ + + ++ ++++ + K
Sbjct: 170 KQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQR 213
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N*
1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M*
3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Length = 166
Score = 37.5 bits (87), Expect = 0.001
Identities = 6/55 (10%), Positives = 18/55 (32%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
GK R K R + + + +++K + + + + + +
Sbjct: 112 GKAARIKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAPEVAPETQGE 166
Score = 34.4 bits (79), Expect = 0.019
Identities = 5/59 (8%), Positives = 18/59 (30%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
R + K R K + + + +++K + + + + + +
Sbjct: 108 RELRGKAARIKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAPEVAPETQGE 166
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 38.2 bits (88), Expect = 0.002
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KK + EK ++ K +++K + K++K E K ++ + E +K+ +K+K K
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTG 70
Query: 268 KK 269
Sbjct: 71 AF 72
Score = 38.2 bits (88), Expect = 0.002
Identities = 15/72 (20%), Positives = 35/72 (48%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
E +K+ + EK ++ K E++K + K++K + + +K E + +++ EK+K
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKA 66
Query: 260 KKKKEKKKKKDE 271
+K +
Sbjct: 67 RKTGAFYVPAEA 78
Score = 35.9 bits (82), Expect = 0.009
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
++EK ++ K E++K + K+++ + K +K + + +KK +EK+K +K
Sbjct: 14 ARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFY 73
Query: 263 KEKKKK 268
+ K
Sbjct: 74 VPAEAK 79
Score = 35.5 bits (81), Expect = 0.010
Identities = 12/72 (16%), Positives = 35/72 (48%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E +++ + ++ RK + E+++ + K+++ + K +K E + +KK +K++
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKA 66
Query: 239 KKKKKEKKKKKE 250
+K +
Sbjct: 67 RKTGAFYVPAEA 78
Score = 35.1 bits (80), Expect = 0.016
Identities = 9/69 (13%), Positives = 34/69 (49%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+K ++E+ ++ + ++ K + +++K + + +K + + +K+ +K++ +K
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTG 70
Query: 250 EEKKKEKKK 258
+ K
Sbjct: 71 AFYVPAEAK 79
Score = 34.4 bits (78), Expect = 0.025
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK + EK +K K ++ K + K++K E K +K + + +KK + +R+
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRK 65
Score = 32.8 bits (74), Expect = 0.075
Identities = 12/69 (17%), Positives = 32/69 (46%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K+ +E+ + K E++K + K+++ + K ++ + + ++K +K K +K
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTG 70
Query: 251 EKKKEKKKK 259
+ K
Sbjct: 71 AFYVPAEAK 79
Score = 32.8 bits (74), Expect = 0.086
Identities = 16/73 (21%), Positives = 35/73 (47%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E +K+ + E+ +K K +++K + +++K + K +K + + EKK E++K
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKA 66
Query: 255 EKKKKKKKKEKKK 267
K + K
Sbjct: 67 RKTGAFYVPAEAK 79
Score = 32.8 bits (74), Expect = 0.092
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+K R K + + ++ + + K++K E K +K + + +KK +K+K +
Sbjct: 11 KKLARDEKLRKAKA---EQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKAR 67
Query: 246 KKKKEEKKKEKK 257
K E K
Sbjct: 68 KTGAFYVPAEAK 79
Score = 32.4 bits (73), Expect = 0.12
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E +K+ +++K +K K +++K + K++K E + +K + E +KK +R
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKR 64
Score = 31.3 bits (70), Expect = 0.28
Identities = 12/55 (21%), Positives = 30/55 (54%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KK + ++ +K K ++++ + +++K + K +K + + +KK DE R+
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRK 65
Score = 29.4 bits (65), Expect = 1.2
Identities = 9/65 (13%), Positives = 33/65 (50%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ E+ ++ + ++++ + ++++ E + +K + + EKK ++K++ +K
Sbjct: 15 RDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYV 74
Query: 237 EKKKK 241
+ K
Sbjct: 75 PAEAK 79
Score = 29.4 bits (65), Expect = 1.3
Identities = 8/58 (13%), Positives = 28/58 (48%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K E ++K + +K ++ K ++++ + +++K + K +K + + ++
Sbjct: 2 SKFVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKI 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 38.7 bits (91), Expect = 0.002
Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 186 RKRKRKRKKEEEEKEEEKK----EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ R R KE E+K ++K + ++ EK + E++ +++ + KK
Sbjct: 384 KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443
Query: 242 KKEKKKKKEEKKKE 255
K+++ ++ E +
Sbjct: 444 KEKQGQENSEVTVD 457
Score = 36.4 bits (85), Expect = 0.007
Identities = 11/58 (18%), Positives = 31/58 (53%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
KE ++K + K+K+ + ++ EK + +++ +++ E KK ++K+ ++
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQEN 451
Score = 32.6 bits (75), Expect = 0.12
Identities = 12/55 (21%), Positives = 32/55 (58%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K+ E+K ++ +KEK + ++ +K + +++ +++ E K+ K+K+ +E
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQEN 451
Score = 32.6 bits (75), Expect = 0.12
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ E+K E +KEK + ++ +K +++ ++ E KK K+++ ++ E
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 31.8 bits (73), Expect = 0.25
Identities = 9/55 (16%), Positives = 31/55 (56%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KE +++ + K+K+ + ++ ++ + +++ +E+ + KK K+K+ ++
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQEN 451
Score = 29.1 bits (66), Expect = 1.8
Identities = 9/53 (16%), Positives = 30/53 (56%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++ ++K + +K+K+ + +E +K + E++ +++ ++ KK E + +
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQ 449
Score = 27.9 bits (63), Expect = 4.3
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK 219
+K+ Q + K ++ E++ E+ E+ KK K+++ +E
Sbjct: 409 EKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQEN 451
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 38.3 bits (89), Expect = 0.002
Identities = 12/70 (17%), Positives = 29/70 (41%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ K K + +++ ++ ++KK ++ ++E K K E + +
Sbjct: 258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEM 317
Query: 263 KEKKKKKDEG 272
KE++K G
Sbjct: 318 KEEQKSNTAG 327
Score = 35.6 bits (82), Expect = 0.013
Identities = 10/58 (17%), Positives = 26/58 (44%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
++ +++ +EKK E+ E++ K K + + + K+E+K + +
Sbjct: 274 QQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQSQ 331
Score = 35.3 bits (81), Expect = 0.018
Identities = 8/69 (11%), Positives = 30/69 (43%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K + +++ ++ ++KK ++ +++ + K + + + KE++K
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTA 326
Query: 263 KEKKKKKDE 271
+ + + E
Sbjct: 327 GSQSQVETE 335
Score = 33.7 bits (77), Expect = 0.051
Identities = 7/65 (10%), Positives = 26/65 (40%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K + ++ + + +EKK ++ E++ + K + + ++++K
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTA 326
Query: 253 KKEKK 257
+ +
Sbjct: 327 GSQSQ 331
Score = 29.1 bits (65), Expect = 1.5
Identities = 10/74 (13%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK-KEKKKKKKEKKKKKEEKKKEKK 257
E + + +K + + K + +++ +++ +EKK ++ EE+ K K
Sbjct: 245 DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKA 304
Query: 258 KKKKKKEKKKKKDE 271
+ + +
Sbjct: 305 EASSGDHPTDTEMK 318
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane
targeting, GTPase, GAP, longin domain, SEDL, transport
protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4
PDB: 2go5_1
Length = 185
Score = 37.4 bits (86), Expect = 0.002
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
E EE K KK + EK KK + + + +K KEK K K+K KKE
Sbjct: 131 REAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 184
Score = 37.0 bits (85), Expect = 0.003
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+ K KK ++ +K KK + E + ++ K+K K +KK K EG
Sbjct: 135 ESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEG 185
Score = 33.6 bits (76), Expect = 0.037
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++ E+ + + K+ + +K KK + + + +K +EK K KKK KKE
Sbjct: 131 REAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 184
Score = 30.5 bits (68), Expect = 0.40
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
EE K + K+ + EK K+ + + + +K K+K K KK+ KKE
Sbjct: 134 EESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 184
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 38.3 bits (89), Expect = 0.002
Identities = 14/73 (19%), Positives = 39/73 (53%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K+E + KKKE+++ + + E + ++++++++K K K+ E+ + ++ + +
Sbjct: 392 KQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSGEVF 451
Query: 263 KEKKKKKDEGRRR 275
+ K R+R
Sbjct: 452 DKDLSKLKRNRKR 464
Score = 36.0 bits (83), Expect = 0.009
Identities = 12/47 (25%), Positives = 30/47 (63%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ K++ + KKK+++E++ + E + KE++++++K K K+ E
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
Score = 35.6 bits (82), Expect = 0.013
Identities = 11/52 (21%), Positives = 35/52 (67%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +++ E +KKK+++E++ + + + K++ E++++ +K K+ E+ + D+
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDD 440
Score = 35.3 bits (81), Expect = 0.020
Identities = 12/47 (25%), Positives = 32/47 (68%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E K+E + +KKKE+++ + + + + KE+++++++ +K KE ++
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
Score = 35.3 bits (81), Expect = 0.021
Identities = 16/89 (17%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 173 YKGGKKERRKQRRRKRK-RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
K+E R++K + +R + E + +E+++ E+K K KE +E + + +
Sbjct: 388 VSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRS 447
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+ + K K +K+ + + +++
Sbjct: 448 GEVFDKDLSKLKRNRKRITNQMTDSSRER 476
Score = 33.3 bits (76), Expect = 0.080
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK----KKKKKKE 237
+ +++ + RKK+EEE+ + E + KE+++ ++K +K KE +E + +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSG 448
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ K K K+ K+ + +E+ K
Sbjct: 449 EVFDKDLSKLKRNRKRITNQMTDSSRERPITK 480
Score = 32.6 bits (74), Expect = 0.13
Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE----------KKK 230
+ ++ ++KKEEEE+ + + K+++++E+K K K+ ++ +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSG 448
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ K K K+ K+ + +++ K
Sbjct: 449 EVFDKDLSKLKRNRKRITNQMTDSSRERPITK 480
Score = 29.1 bits (65), Expect = 1.9
Identities = 13/77 (16%), Positives = 36/77 (46%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ERR + + K +R++E + ++ ++ E+ E + + K+ K K+ +K
Sbjct: 404 EEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSGEVFDKDLSKLKRNRK 463
Query: 237 EKKKKKKEKKKKKEEKK 253
+ + +++ K
Sbjct: 464 RITNQMTDSSRERPITK 480
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 38.4 bits (90), Expect = 0.002
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+K K E+ KEK + + K+ K KKK K KK
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 38.1 bits (89), Expect = 0.002
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ +K K E+ K+K ++ + ++ K +KK K KK
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 35.8 bits (83), Expect = 0.014
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 159 EWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE 218
EWL +E ++ K +R KE+ ++ E K+ K K+K K KK
Sbjct: 716 EWL-------IEIAPAYYDLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKH 768
Query: 219 KKKK 222
Sbjct: 769 HHHH 772
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 37.9 bits (87), Expect = 0.002
Identities = 5/62 (8%), Positives = 23/62 (37%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
++ + +R ++ + + EKE E + ++ + + + + + + +
Sbjct: 299 FRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGALG 358
Query: 233 KK 234
Sbjct: 359 HH 360
Score = 35.6 bits (81), Expect = 0.011
Identities = 5/55 (9%), Positives = 24/55 (43%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
++ K+ +K + + K + +K+ + ++ +E + + + + + +
Sbjct: 301 SERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
Score = 34.8 bits (79), Expect = 0.023
Identities = 8/64 (12%), Positives = 27/64 (42%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E + R KR ++ + E+ +++ EK+ E ++ ++ + + + + + +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGA 356
Query: 239 KKKK 242
Sbjct: 357 LGHH 360
Score = 34.1 bits (77), Expect = 0.036
Identities = 9/61 (14%), Positives = 24/61 (39%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
R + KR +K E E + + +KE + + +E + + + + + + +
Sbjct: 300 RSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGALGH 359
Query: 244 E 244
Sbjct: 360 H 360
Score = 33.7 bits (76), Expect = 0.052
Identities = 8/64 (12%), Positives = 26/64 (40%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
E + E K+ +K + ++ K + EK+ + ++ +E + + + + + +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGA 356
Query: 260 KKKK 263
Sbjct: 357 LGHH 360
Score = 32.9 bits (74), Expect = 0.098
Identities = 6/72 (8%), Positives = 28/72 (38%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
E ++ E + ++ ++ K + E + + +K+ E ++ ++ + + + + + +
Sbjct: 289 EVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQ 348
Query: 258 KKKKKKEKKKKK 269
Sbjct: 349 GGDGDGGALGHH 360
Score = 32.5 bits (73), Expect = 0.14
Identities = 7/73 (9%), Positives = 28/73 (38%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E + + R + + ++ E ++ K + EK+ E ++ ++ + + + + +
Sbjct: 288 QEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQM 347
Query: 238 KKKKKKEKKKKKE 250
+
Sbjct: 348 QGGDGDGGALGHH 360
Score = 31.8 bits (71), Expect = 0.21
Identities = 8/64 (12%), Positives = 26/64 (40%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E + E K +K + ++ K++ EK+ E ++ ++ + + + + + +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGA 356
Query: 256 KKKK 259
Sbjct: 357 LGHH 360
Score = 31.4 bits (70), Expect = 0.28
Identities = 10/66 (15%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+E ++ E + E+ K +K + E K + +K+ E ++ ++ + + + +
Sbjct: 288 QEVTQDLHYENFRSERLKRGGRKVEN--EDMNKDQILLEKEAELRRMQEMIARMQAQMQM 345
Query: 269 KDEGRR 274
+ +G
Sbjct: 346 QMQGGD 351
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 37.5 bits (86), Expect = 0.002
Identities = 15/75 (20%), Positives = 32/75 (42%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E K ++ K +++E +KK++ EK K + K + ++ + E + K
Sbjct: 3 SEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDK 62
Query: 255 EKKKKKKKKEKKKKK 269
E + K++ K
Sbjct: 63 ELVQLKREARMKGGF 77
Score = 33.7 bits (76), Expect = 0.040
Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
KR++EE E+K+ K +K + + K + E+ + + ++K+ + +++ +
Sbjct: 15 ILKRRREEVWAAEKKQ--KVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREAR 72
Query: 249 KEEKKKEKKKKK 260
+ + K
Sbjct: 73 MKGGFYVSPEAK 84
Score = 32.9 bits (74), Expect = 0.092
Identities = 13/71 (18%), Positives = 32/71 (45%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E K ++ +++++E +KK+K ++ K + K ++ + + + KE
Sbjct: 4 EAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKE 63
Query: 265 KKKKKDEGRRR 275
+ K E R +
Sbjct: 64 LVQLKREARMK 74
Score = 32.9 bits (74), Expect = 0.093
Identities = 12/73 (16%), Positives = 33/73 (45%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E+ +RR+ + +++++ EK + + K + E+ E + + K+ + K+E
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREA 71
Query: 239 KKKKKEKKKKKEE 251
+ K + +
Sbjct: 72 RMKGGFYVSPEAK 84
Score = 32.5 bits (73), Expect = 0.094
Identities = 10/69 (14%), Positives = 31/69 (44%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
KR+R+ E+K++ E+ K + + + ++ + + + K+ + K++ + +
Sbjct: 16 LKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKG 75
Query: 246 KKKKEEKKK 254
+ K
Sbjct: 76 GFYVSPEAK 84
Score = 31.0 bits (69), Expect = 0.33
Identities = 11/58 (18%), Positives = 24/58 (41%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K EK K++++E +K++K E+ K + K ++ E +
Sbjct: 3 SEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQ 60
Score = 30.2 bits (67), Expect = 0.55
Identities = 8/62 (12%), Positives = 27/62 (43%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ + EK K+++++ +KK+K +K K + + + ++ + + + +
Sbjct: 3 SEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDK 62
Query: 274 RR 275
Sbjct: 63 EL 64
Score = 30.2 bits (67), Expect = 0.67
Identities = 14/71 (19%), Positives = 29/71 (40%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E K EK K+++E+ +KK+K EK K + K ++ + + + +
Sbjct: 3 SEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDK 62
Query: 265 KKKKKDEGRRR 275
+ + R
Sbjct: 63 ELVQLKREARM 73
Score = 27.9 bits (61), Expect = 3.1
Identities = 9/57 (15%), Positives = 22/57 (38%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
KK++ + K K E+ E + ++K+ + K + + + + K
Sbjct: 28 KKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEAK 84
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 37.4 bits (86), Expect = 0.003
Identities = 12/59 (20%), Positives = 25/59 (42%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ + + ++ ++K + E KK+K E KK K +E++ D+
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDD 318
Score = 33.5 bits (76), Expect = 0.052
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 200 EEEKKEEKKKEKKKEKKKEK-KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
++ + ++ ++K ++ E KK+K E +K K +EE+
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEW 314
Score = 31.6 bits (71), Expect = 0.24
Identities = 9/56 (16%), Positives = 23/56 (41%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
K + R ++ +++ + E +K+K + + KK K +++E
Sbjct: 259 VKKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEW 314
Score = 31.2 bits (70), Expect = 0.34
Identities = 9/55 (16%), Positives = 25/55 (45%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+K + + EE ++K ++ + KK++ ++ KK K ++++
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEW 314
Score = 30.8 bits (69), Expect = 0.41
Identities = 10/60 (16%), Positives = 24/60 (40%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+K E EE ++K ++ + KK++ + +K K ++E+ +
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDDL 319
Score = 30.4 bits (68), Expect = 0.67
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++ + + +E K+K ++ + +K+ K E+ KK K ++E
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKR-------KGYEDDDYVSKKSKHEEE 312
Query: 265 KKKKKDEGRR 274
+ D
Sbjct: 313 EWTDDDLVES 322
Score = 28.5 bits (63), Expect = 2.2
Identities = 7/49 (14%), Positives = 18/49 (36%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K + + ++ K+K + E KK+K + + +
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSK 308
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Length = 431
Score = 37.7 bits (87), Expect = 0.003
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK--------KKEKKKKKEEKKKEKK 257
+ ++K E+K E KKEK + + +K+ ++ + + +K ++ +
Sbjct: 7 KIYQQKSFEQKIESLKKEKDDQLSEGNQKEHFRQGQAEVIAYYPLQGEKVISSVRELINQ 66
Query: 258 KKKKKKEKKKKK 269
K K E K
Sbjct: 67 DVKDKLESKDNL 78
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 37.6 bits (88), Expect = 0.003
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK--KKKKKKEKKKKKK 243
+ ++KR E +E E K+ K ++ K+ +K+ K+ K KE K
Sbjct: 19 KASQKKRGDSVELVDEIIAEYKEW-VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLI 77
Query: 244 EKKKKKEEKKKEKKKKKKKKEKK 266
+K+K +KKE +K+ + +K
Sbjct: 78 AEKEKLSNEKKEIIEKEAEADKN 100
Score = 36.8 bits (86), Expect = 0.005
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 180 RRKQRRRKRK-----------RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+ Q++R ++ K + +E K+ +KE K K KE K+
Sbjct: 19 KASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKK--LNSVQKEIGKRFKAKEDAKDL 76
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+K+K +KK+ EK+ + ++ + K
Sbjct: 77 IAEKEKLSNEKKEIIEKEAEADKNLRSK 104
Score = 33.0 bits (76), Expect = 0.096
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ + + + + KK +K+ ++ K KE+ K +K+K +KK+ E
Sbjct: 39 YKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIE 92
Score = 29.1 bits (66), Expect = 1.8
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ + K+ K KK K K K K+ K K
Sbjct: 438 EPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGKN 476
Score = 28.0 bits (63), Expect = 3.7
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
KE K +K K K K KK + K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 28.0 bits (63), Expect = 3.7
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K+ K KK + K K +K K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 28.0 bits (63), Expect = 4.2
Identities = 10/27 (37%), Positives = 10/27 (37%)
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKK 268
KE K KK K K K KK
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKK 471
Score = 26.8 bits (60), Expect = 8.2
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K+ K KK K + K KK K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 26.8 bits (60), Expect = 9.5
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K+ K KK K K + KK K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 37.2 bits (85), Expect = 0.003
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKE--KKKEKKKEKKKKEKKKEKKKKKKKK 235
++++K K+K K +KK E KKK + + K ++ ++K K +
Sbjct: 6 EKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLR 65
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K ++K EK K ++ ++ + + + + +K
Sbjct: 66 KARRKLIYEKAKHYHKEYRQMYRTEIRMARMARK 99
Score = 36.0 bits (82), Expect = 0.008
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E++K+ K+K K KKK + KKK++ + K K +KK K
Sbjct: 6 EKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLR 65
Query: 256 KKKKKKKKEKKKKKDEGRRR 275
K ++K EK K + R+
Sbjct: 66 KARRKLIYEKAKHYHKEYRQ 85
Score = 36.0 bits (82), Expect = 0.009
Identities = 18/91 (19%), Positives = 38/91 (41%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+K+K +K+ + K+K + KKK + + K K+ +K+ K
Sbjct: 6 EKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLR 65
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K ++K +K K K+ ++ + + R
Sbjct: 66 KARRKLIYEKAKHYHKEYRQMYRTEIRMARM 96
Score = 34.5 bits (78), Expect = 0.030
Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E++K+ +KK + KK+ + +KK+ + + K K+ +KK +
Sbjct: 6 EKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKR--RNFAELKVKRLRKKFALKT 63
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+K + K ++ K K+ ++ + + + R+
Sbjct: 64 LRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKA 100
Score = 34.1 bits (77), Expect = 0.037
Identities = 15/94 (15%), Positives = 37/94 (39%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
KK + K+K E +K+ E K ++ ++K K ++ +++ +K
Sbjct: 17 TLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKA 76
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K K+ ++ + + + + K + K
Sbjct: 77 KHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPK 110
Score = 33.7 bits (76), Expect = 0.054
Identities = 21/74 (28%), Positives = 30/74 (40%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E E+KKK +KK K KKK E KKK+ + + K+ KK
Sbjct: 2 EAVPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFAL 61
Query: 261 KKKEKKKKKDEGRR 274
K K ++K +
Sbjct: 62 KTLRKARRKLIYEK 75
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 37.5 bits (86), Expect = 0.004
Identities = 10/68 (14%), Positives = 34/68 (50%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
E+++ +K ++ ++ +++ + + +K K + + + K+K ++ + K +
Sbjct: 108 RERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRD 167
Query: 261 KKKEKKKK 268
K K+K +
Sbjct: 168 KAKDKYVR 175
Score = 35.9 bits (82), Expect = 0.011
Identities = 12/80 (15%), Positives = 35/80 (43%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
R R++ RK E+ ++ +++ + + ++ K + + + + K+K ++ K K +
Sbjct: 107 IRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDR 166
Query: 243 KEKKKKKEEKKKEKKKKKKK 262
+ K K + +
Sbjct: 167 DKAKDKYVRSLWKLFAHHNR 186
Score = 33.2 bits (75), Expect = 0.072
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE-KKKEKKKKKKKKK 236
R+Q R+ + ++ ++E + ++ +K K + + + + K+K ++ K K +
Sbjct: 107 IRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDR 166
Query: 237 EKKKKKKEKKKKKEEKKKEK 256
+K K K + K +
Sbjct: 167 DKAKDKYVRSLWKLFAHHNR 186
Score = 32.5 bits (73), Expect = 0.13
Identities = 9/67 (13%), Positives = 36/67 (53%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+E+++ +K ++ ++ +++ K + +K K + + ++ + ++K ++ K+K +
Sbjct: 107 IRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDR 166
Query: 268 KKDEGRR 274
K + +
Sbjct: 167 DKAKDKY 173
Score = 30.9 bits (69), Expect = 0.49
Identities = 12/71 (16%), Positives = 34/71 (47%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K +E+++ +K ++ ++ +++ K + +K K + + + + K+K +E
Sbjct: 100 LSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQE 159
Query: 265 KKKKKDEGRRR 275
K KD + +
Sbjct: 160 ASKDKDRDKAK 170
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 37.2 bits (86), Expect = 0.004
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE-KKKKKKEKKKK 248
+ E ++ +E+ + KK K + K + +KK + K K
Sbjct: 194 SELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVK 253
Query: 249 KEEKKKEKKKKKKKKEKKKKKDE 271
EK + K++ DE
Sbjct: 254 NAEKVQTAGIVTPYDILKQELDE 276
Score = 34.5 bits (79), Expect = 0.025
Identities = 11/78 (14%), Positives = 26/78 (33%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
RKK + + K K +K + + K++ + + + + K E
Sbjct: 236 TRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKRDGAYIE 295
Query: 251 EKKKEKKKKKKKKEKKKK 268
++ KK ++
Sbjct: 296 LCVCSVEEAKKNTQEVVT 313
Score = 33.3 bits (76), Expect = 0.061
Identities = 14/70 (20%), Positives = 23/70 (32%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ + +K KEK K KK K + K + +KK + K K
Sbjct: 194 SELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVK 253
Query: 263 KEKKKKKDEG 272
+K +
Sbjct: 254 NAEKVQTAGI 263
Score = 33.3 bits (76), Expect = 0.064
Identities = 8/72 (11%), Positives = 24/72 (33%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ + ++ KK + K K +K + + K++ ++ + +
Sbjct: 225 QNACKSYDQWITRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFEN 284
Query: 254 KEKKKKKKKKEK 265
+ K+ E
Sbjct: 285 EINKRDGAYIEL 296
Score = 31.8 bits (72), Expect = 0.23
Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKE-KKKKEKKKEKKKKKKKKKEKKKKKK 243
K KK + + + + KK + K K +K +
Sbjct: 208 DGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVKNAEKVQTAGIVTPY 267
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K++ ++ E + + ++ E
Sbjct: 268 DILKQELDEFNEVAFENEINKRDGAYIE 295
Score = 31.4 bits (71), Expect = 0.27
Identities = 9/76 (11%), Positives = 25/76 (32%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+K + K K +K + K++ + + + + K++ E
Sbjct: 236 TRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKRDGAYIE 295
Query: 256 KKKKKKKKEKKKKKDE 271
++ KK ++
Sbjct: 296 LCVCSVEEAKKNTQEV 311
Score = 29.9 bits (67), Expect = 0.90
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 202 EKKEEKKKEKKKEKKKEKKK-KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+ ++ KK + K K +K + K++ + E E + K
Sbjct: 229 KSYDQWITRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINK 288
Query: 261 KKKEKKKK 268
+ +
Sbjct: 289 RDGAYIEL 296
Score = 28.7 bits (64), Expect = 2.1
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 179 ERRKQRRRKRKRKRKKE-EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
R+K + K EK + + K++ E + + E K+ E
Sbjct: 236 TRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKRDGAYIE 295
Query: 238 KKKKKKEKKKKKEEKKKE 255
E+ KK ++
Sbjct: 296 LCVCSVEEAKKNTQEVVT 313
Score = 27.9 bits (62), Expect = 3.2
Identities = 7/73 (9%), Positives = 23/73 (31%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K + + K ++ + + K++ E + + E K +
Sbjct: 239 KNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKRDGAYIELCV 298
Query: 237 EKKKKKKEKKKKK 249
++ K+ ++
Sbjct: 299 CSVEEAKKNTQEV 311
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 37.2 bits (86), Expect = 0.004
Identities = 9/51 (17%), Positives = 32/51 (62%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ K+ +K++E +++ ++ + KEK +K++ +K++K+++ + ++
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 36.0 bits (83), Expect = 0.011
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
KE +K ++ E+K + K K+K +K++ EK++K+++ E +
Sbjct: 380 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 35.6 bits (82), Expect = 0.016
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KE +K+ + +EK ++ K KEK +K++ +K++K E+ + + +
Sbjct: 380 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 35.2 bits (81), Expect = 0.019
Identities = 10/51 (19%), Positives = 29/51 (56%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ K+ +K+++ ++K + K KEK +K+ +K++K+++ + +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 34.8 bits (80), Expect = 0.025
Identities = 11/48 (22%), Positives = 29/48 (60%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
KE +K ++ +EK + K K+K ++++ +K++K+++ + E +
Sbjct: 380 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 34.8 bits (80), Expect = 0.025
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
+ KE +K+R + K +R K +EK E+++ EK++++++ + E
Sbjct: 376 FLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 34.5 bits (79), Expect = 0.034
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ +K++E ++K + K KE+ +KE+ +K++K+E+ +
Sbjct: 380 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNA 422
Score = 34.5 bits (79), Expect = 0.037
Identities = 10/53 (18%), Positives = 31/53 (58%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+ K+ +K++E +++ ++ K KEK ++++ +K++K+E+ + +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGV 429
Score = 33.7 bits (77), Expect = 0.056
Identities = 7/51 (13%), Positives = 29/51 (56%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ KE +++ E +++ ++ + KEK ++++ ++++K ++ + +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 33.3 bits (76), Expect = 0.077
Identities = 11/51 (21%), Positives = 28/51 (54%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ K +KR++ EE+ K ++K EK++ +K++K+++ + +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 33.3 bits (76), Expect = 0.078
Identities = 9/51 (17%), Positives = 28/51 (54%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+ K+ +++R+ + K + +EK E+++ EK++++++ + E
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 32.9 bits (75), Expect = 0.12
Identities = 9/51 (17%), Positives = 28/51 (54%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
+ + +KR+ +E+ + + KE+ +KE+ ++++K ++ + E +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 31.4 bits (71), Expect = 0.29
Identities = 8/51 (15%), Positives = 30/51 (58%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Q ++ +++R+ EE+ + + +EK ++++ EK++++++ + +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 31.4 bits (71), Expect = 0.31
Identities = 10/51 (19%), Positives = 26/51 (50%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+ ++ ++ + EEK K K+K +K+ +K++K+++ + E
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 36.6 bits (84), Expect = 0.005
Identities = 13/92 (14%), Positives = 43/92 (46%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+++ + + K E+ ++ K ++K E K E++ + E+ K++ +
Sbjct: 49 LNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQ 108
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ + + + + K ++++ KK+ + +K
Sbjct: 109 ANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140
Score = 35.9 bits (82), Expect = 0.009
Identities = 15/95 (15%), Positives = 41/95 (43%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K+ K K + + E+E+ + + + ++ + K ++K + K ++
Sbjct: 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSER 90
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E + E+ KE + ++ + + + K+K E
Sbjct: 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125
Score = 33.5 bits (76), Expect = 0.046
Identities = 18/99 (18%), Positives = 45/99 (45%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++E R + K + + +E E + + K K ++++ KK+ + ++ + +
Sbjct: 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLV 148
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E + K ++ ++ KKKE +K + + + RR
Sbjct: 149 ENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRW 187
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 36.8 bits (84), Expect = 0.005
Identities = 20/92 (21%), Positives = 42/92 (45%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+KE ++ ++ K+ E+ + +K KK K+ E K+ K+EK ++
Sbjct: 123 QKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREAN 182
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K ++ K+ + K +K K+ + K+K
Sbjct: 183 SKADPSLNPEQLKKLQDKIEKCKQDVLKTKEK 214
Score = 33.3 bits (75), Expect = 0.067
Identities = 16/81 (19%), Positives = 36/81 (44%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E+ + +++ K+ ++ KE + +K +K KK K+ + KK KEEK
Sbjct: 117 EKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLA 176
Query: 255 EKKKKKKKKEKKKKKDEGRRR 275
++ K + ++ ++
Sbjct: 177 ISREANSKADPSLNPEQLKKL 197
Score = 31.4 bits (70), Expect = 0.29
Identities = 19/89 (21%), Positives = 41/89 (46%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
E G++ +K K+ + K+ KEE+ ++ K + ++ +K ++
Sbjct: 140 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQD 199
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
K +K K+ K K+K EK K+ ++ +
Sbjct: 200 KIEKCKQDVLKTKEKYEKSLKELDQGTPQ 228
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 37.4 bits (87), Expect = 0.005
Identities = 6/44 (13%), Positives = 22/44 (50%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
++ +E +E +K ++ + E++ + K +++E+ +
Sbjct: 726 DRFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 33.9 bits (78), Expect = 0.062
Identities = 3/41 (7%), Positives = 20/41 (48%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+E E +K ++ + ++++ + + +++++ +
Sbjct: 728 FQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELR 768
Score = 33.5 bits (77), Expect = 0.074
Identities = 4/42 (9%), Positives = 19/42 (45%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
++ +E++K + + +++ K +++E+ +
Sbjct: 728 FQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 33.5 bits (77), Expect = 0.081
Identities = 5/38 (13%), Positives = 18/38 (47%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+E++K ++ + +E+ + +++EE +
Sbjct: 732 RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 33.5 bits (77), Expect = 0.082
Identities = 5/42 (11%), Positives = 19/42 (45%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ ++++K + + EE+ K +++E+ +
Sbjct: 728 FQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 32.0 bits (73), Expect = 0.24
Identities = 3/42 (7%), Positives = 19/42 (45%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
++ +E++K + ++++ K +++++ +
Sbjct: 728 FQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 30.8 bits (70), Expect = 0.50
Identities = 5/41 (12%), Positives = 19/41 (46%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+E ++ +K + + + E++ K E++++ +
Sbjct: 729 QESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 30.4 bits (69), Expect = 0.73
Identities = 3/38 (7%), Positives = 18/38 (47%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+E++K + + ++++ K +++++ +
Sbjct: 732 RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 30.0 bits (68), Expect = 0.91
Identities = 4/37 (10%), Positives = 18/37 (48%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+E++K ++ + +++ K +E+++ +
Sbjct: 732 RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELR 768
Score = 29.3 bits (66), Expect = 1.5
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
R+R+K ++ + E +E+ K +++E+ +
Sbjct: 732 RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELR 768
Score = 29.3 bits (66), Expect = 1.9
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
+R ++ R +RK ++ + E +EE K +++E+ +
Sbjct: 726 DRFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 27.3 bits (61), Expect = 6.0
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
R ++ + +RK + E ++E K ++++E +
Sbjct: 726 DRFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 36.7 bits (85), Expect = 0.005
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE-KKKKKKEKKKK 248
KR + E K K++ + K KKKE + +
Sbjct: 189 TKRNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNY 248
Query: 249 KEEKKKEKKKKKKKKEKKKKKDE 271
KE K ++K+ + K+K +
Sbjct: 249 KETKAEKKESPEYFKDKCNGECS 271
Score = 33.7 bits (77), Expect = 0.049
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+ KKKE + + + ++ K +KK+ + K K + + K + +
Sbjct: 224 KNYSNFILIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRW 283
Query: 262 KKEKKKKKDE 271
K + D
Sbjct: 284 KNPYETLDDT 293
Score = 32.1 bits (73), Expect = 0.15
Identities = 11/68 (16%), Positives = 21/68 (30%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K + + K KKE + K KKKE + + +
Sbjct: 189 TKRNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNY 248
Query: 268 KKDEGRRR 275
K+ + ++
Sbjct: 249 KETKAEKK 256
Score = 31.7 bits (72), Expect = 0.20
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K + E K KK+ + K KKKE + +
Sbjct: 189 TKRNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKE---YQSLNSQYD 245
Query: 263 KEKKKKKDEGR 273
K+ K E +
Sbjct: 246 MNYKETKAEKK 256
Score = 31.0 bits (70), Expect = 0.40
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKE-----KKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
KK+E + + K+ K +KKE K K + + K++ + K +
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPYETL 290
Query: 256 KKKKKKKK 263
+ K
Sbjct: 291 DDTEVKNN 298
Score = 30.6 bits (69), Expect = 0.50
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKK---KKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
KKKE + + ++ K +KK+ K K + + K+E + + +
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPYETL 290
Query: 262 KKEKKKKK 269
+ K
Sbjct: 291 DDTEVKNN 298
Score = 29.0 bits (65), Expect = 1.7
Identities = 9/68 (13%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 191 KRKKEEEEKEEEK-KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
KK+E + + K+ K ++K+ + K+K + + + + + K +
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPYETL 290
Query: 250 EEKKKEKK 257
++ + +
Sbjct: 291 DDTEVKNN 298
Score = 26.7 bits (59), Expect = 9.6
Identities = 14/68 (20%), Positives = 25/68 (36%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+K + + + +E K EKK+ + K K + + K + + K E
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPYETL 290
Query: 247 KKKEEKKK 254
E K
Sbjct: 291 DDTEVKNN 298
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 36.7 bits (84), Expect = 0.006
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK-KKKEKKKEKKKKKKKK 235
+KE ++ ++ K+ E+ + +K KK K+ E K+ K+++ ++
Sbjct: 123 QKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREAN 182
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ ++ KK + K EK K+ K K+K
Sbjct: 183 SKADPSLNPEQLKKLQDKIEKCKQDVLKTKEK 214
Score = 32.5 bits (73), Expect = 0.12
Identities = 19/89 (21%), Positives = 41/89 (46%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
E G++ +K K+ + K+ KEE+ ++ K + ++ +K ++
Sbjct: 140 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQD 199
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
K +K K+ K K+K EK K+ ++ +
Sbjct: 200 KIEKCKQDVLKTKEKYEKSLKELDQGTPQ 228
Score = 27.1 bits (59), Expect = 6.4
Identities = 16/79 (20%), Positives = 35/79 (44%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
D K K+ ++ K+ +EE+ ++ K + ++ KK ++K +
Sbjct: 143 DGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIE 202
Query: 227 EKKKKKKKKKEKKKKKKEK 245
+ K+ K KEK +K ++
Sbjct: 203 KCKQDVLKTKEKYEKSLKE 221
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 36.6 bits (84), Expect = 0.006
Identities = 14/82 (17%), Positives = 30/82 (36%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E R K + + E+ + + K +KK K++ + KK ++
Sbjct: 216 EERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQT 275
Query: 239 KKKKKEKKKKKEEKKKEKKKKK 260
K K+E+ + K ++
Sbjct: 276 KLSKEERAARVAAKIAALAGQQ 297
Score = 27.4 bits (60), Expect = 5.5
Identities = 10/68 (14%), Positives = 24/68 (35%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
EE ++ ++ + K + E + K +++ KE+ +
Sbjct: 209 EELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAE 268
Query: 261 KKKEKKKK 268
KK ++ K
Sbjct: 269 SKKYRQTK 276
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 36.4 bits (84), Expect = 0.007
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK--------KEKKKEKKKKKKKKKEKKKK 241
+R+K ++ E + + K KK E + + K + K
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDNEFKN 251
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K + KEK K + K D+
Sbjct: 252 KNSNDKDAPDYLKEKCNDNKCECLNKHIDD 281
Score = 33.7 bits (77), Expect = 0.053
Identities = 15/75 (20%), Positives = 28/75 (37%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ KK E + + K + K K K+ K+K K + K ++ K K
Sbjct: 228 KNYILTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWK 287
Query: 257 KKKKKKKEKKKKKDE 271
+ ++ K K +
Sbjct: 288 NPYETLEDTFKSKCD 302
Score = 32.1 bits (73), Expect = 0.18
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 191 KRKKEEEEKEEEK-KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
KK E E + K E K + +K KEK + K + K K K K +
Sbjct: 232 LTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWKNPYE 291
Query: 250 EEKKKEKKKKKKKK 263
+ K K K
Sbjct: 292 TLEDTFKSKCDCPK 305
Score = 31.0 bits (70), Expect = 0.39
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 3/69 (4%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ ++K K + + K K KK E E + K E
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTE---YEIQTNKYDNE 248
Query: 265 KKKKKDEGR 273
K K +
Sbjct: 249 FKNKNSNDK 257
Score = 29.8 bits (67), Expect = 0.92
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK--EEKKKEKKKKKKKKEKKKKK 269
+ +K K + + K K KK E + + K + + K
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDNEFKN 251
Query: 270 DEGRRR 275
+
Sbjct: 252 KNSNDK 257
Score = 28.7 bits (64), Expect = 2.1
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKK--EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+K E + + K + + + K K + KEK K + K + K K +
Sbjct: 232 LTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWKNPYE 291
Query: 254 KEKKKKKKKKEKKK 267
+ K K + K
Sbjct: 292 TLEDTFKSKCDCPK 305
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 36.0 bits (82), Expect = 0.008
Identities = 17/95 (17%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K+ ++ ++ K+ E + +K +K KK ++ + KK K+++ +
Sbjct: 114 QKDAYHKQIMGGFKETKEAE---DGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTR 170
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E K ++ +++KK K K +++ +K +++
Sbjct: 171 EMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEK 205
Score = 34.1 bits (77), Expect = 0.044
Identities = 15/93 (16%), Positives = 43/93 (46%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ ++ K ++ K ++ +K KE + KK ++++ ++ K
Sbjct: 116 DAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSK 175
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ E++KK +K + ++ +K ++K +K
Sbjct: 176 TEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEK 208
Score = 31.4 bits (70), Expect = 0.31
Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE---KKKEKKKKKKKK 235
++ + ++ K E+ EK + +++ ++ KE K+ E +K +K KK K
Sbjct: 89 DKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMK 148
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + KK KEE+ ++ K E+ ++ ++
Sbjct: 149 ELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKL 188
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 36.4 bits (84), Expect = 0.010
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K+ K+ ++K + K++ K E + + K +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPK 673
Score = 35.6 bits (82), Expect = 0.015
Identities = 10/60 (16%), Positives = 20/60 (33%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K+ ++K E KK+ K + + + K K + E+ +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTR 687
Score = 35.6 bits (82), Expect = 0.016
Identities = 6/51 (11%), Positives = 17/51 (33%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K+ ++K + +K+ K + + + K K + +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQD 682
Score = 35.6 bits (82), Expect = 0.016
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K+ K+ ++K E KK K + ++ + + K + + E+ E +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTR 687
Score = 35.6 bits (82), Expect = 0.016
Identities = 9/56 (16%), Positives = 21/56 (37%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K+ ++K E KK+ K + + + + K K + E+ + +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTR 687
Score = 34.8 bits (80), Expect = 0.029
Identities = 7/53 (13%), Positives = 20/53 (37%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K+ ++K + KK+ K + + + + K K + ++ +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAE 684
Score = 30.2 bits (68), Expect = 0.76
Identities = 3/35 (8%), Positives = 14/35 (40%)
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+ +++ + K++ K + + + +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSP 666
Score = 30.2 bits (68), Expect = 0.93
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K K+ +++ + KK K + + + E +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHA 671
Score = 29.4 bits (66), Expect = 1.3
Identities = 3/38 (7%), Positives = 14/38 (36%)
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+ ++K + +++ K + + + +
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAH 670
Score = 29.0 bits (65), Expect = 1.9
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K K+ +++ + +K+ K + + + EG
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSS 665
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 35.0 bits (80), Expect = 0.011
Identities = 19/94 (20%), Positives = 45/94 (47%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
++R+R K+ + +KK +K + ++ ++ +E K++ KK K++KK
Sbjct: 69 AVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKA 128
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK + K ++ + + ++ + K G +R
Sbjct: 129 KKAEVAKSQKTQSKGGATQRGAKGPKIGGGGGKR 162
Score = 31.6 bits (71), Expect = 0.15
Identities = 20/102 (19%), Positives = 45/102 (44%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Y+ K+ K++R+ K+ + + +KK+ +K E + ++ ++ K
Sbjct: 57 YRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIK 116
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++ K+ K +KK KK + + +K + K + K G
Sbjct: 117 ERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGGG 158
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 35.5 bits (81), Expect = 0.012
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK-KKKEKKKEKKKKKKKKK 236
++ + ++RK E+ ++ +K K K EK K K + +++
Sbjct: 102 QKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNA 161
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ KK + +K K + +K ++K
Sbjct: 162 NADSSLSPDQVKKMHDRVQKTKDQVQKCREK 192
Score = 30.5 bits (68), Expect = 0.56
Identities = 14/95 (14%), Positives = 35/95 (36%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ ++RK ++ ++ K K EK K K E+ +++
Sbjct: 105 NYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANAD 164
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ KK +K + + +K +++ ++ E
Sbjct: 165 SSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAE 199
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 35.5 bits (82), Expect = 0.013
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
KE +K ++ E+K + K K+K +K++ EK+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 35.5 bits (82), Expect = 0.013
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
KE +K+ + +EK ++ K KEK +K++ +K+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 35.5 bits (82), Expect = 0.014
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ K+ +K++E +++ ++ K K++ +K++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 35.1 bits (81), Expect = 0.021
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K+ +K++E ++K + K KE+ +KE+ +K+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.7 bits (80), Expect = 0.022
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
KE +K+ + +EK + K ++K EK++ +K+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.3 bits (79), Expect = 0.031
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ ++ +K++E ++K K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.3 bits (79), Expect = 0.035
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ K+ +K++E +++ ++ + KEK +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.3 bits (79), Expect = 0.036
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ K+ +K++E ++K ++ K K+K ++++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.0 bits (78), Expect = 0.039
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ +E +K E +E+ ++ K ++K EK++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.0 bits (78), Expect = 0.041
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
+E +K + +EK + K K+K EK++ +K+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.0 bits (78), Expect = 0.042
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKK 208
+ KE +K+R + K +R K +EK E+++ EK+
Sbjct: 305 FLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.0 bits (78), Expect = 0.044
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+ K+ +K+++ E+K ++ + KEK +K++ +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.6 bits (77), Expect = 0.054
Identities = 9/35 (25%), Positives = 24/35 (68%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+ ++ +K+++ +EK ++ K K+K E+++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.6 bits (77), Expect = 0.056
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+ KE +K+++ ++K + K ++K +K++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.6 bits (77), Expect = 0.058
Identities = 7/35 (20%), Positives = 24/35 (68%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ K+ +K+++ +EK ++ + K++ +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.6 bits (77), Expect = 0.060
Identities = 9/35 (25%), Positives = 24/35 (68%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+ K+ +K+++ E+K ++ + K+K EK++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.6 bits (77), Expect = 0.064
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
+ K+ ++ +E E+K + K K++ +KE+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.068
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ K+ +++++ ++K ++ K K+K +KE+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.072
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ K+ +K ++ ++K ++ K ++K EK++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.075
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ K+ +K+ + +++ ++ K K+K +KE+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.075
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K+ +K+++ EEK + K K+K EK++ + +
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.078
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ K+ +K++E +++ ++ K KEK ++++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.080
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+ K+ +K+++ ++K + K KEK +K+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.8 bits (75), Expect = 0.088
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKK 217
+ K +KR++ EE+ K ++K EK++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.4 bits (74), Expect = 0.12
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ K+ +K++E ++K ++ + K+K +K+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.4 bits (74), Expect = 0.12
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+ +E ++ + EEK + K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.4 bits (74), Expect = 0.13
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+ K+ +K+ + ++K + K +EK ++++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.4 bits (74), Expect = 0.14
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ ++ +++++ E+K + K K+K EK++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.4 bits (74), Expect = 0.15
Identities = 7/35 (20%), Positives = 23/35 (65%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ K+ +K ++ +++ ++ + K+K +KE+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.0 bits (73), Expect = 0.16
Identities = 7/35 (20%), Positives = 24/35 (68%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+ ++ ++++E ++K ++ + KEK +KE+ +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.6 bits (72), Expect = 0.23
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKK 212
+ K+ +++R+ + K + +EK E+++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.6 bits (72), Expect = 0.26
Identities = 6/35 (17%), Positives = 24/35 (68%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ K+ +++++ +++ ++ K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.3 bits (71), Expect = 0.29
Identities = 7/35 (20%), Positives = 24/35 (68%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+ K+ +K+++ ++K ++ K K+K +K++ +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.3 bits (71), Expect = 0.34
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ K+ +K+ + ++K + K K+K +K+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.9 bits (70), Expect = 0.37
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ KE +K ++ ++K ++ K K+K +K++ E++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.9 bits (70), Expect = 0.38
Identities = 5/35 (14%), Positives = 24/35 (68%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+ ++ +++++ ++K ++ + K++ +KE+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.9 bits (70), Expect = 0.40
Identities = 7/35 (20%), Positives = 21/35 (60%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK 215
+ + +KR+ +E+ + + KE+ +KE+ +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 0.49
Identities = 7/35 (20%), Positives = 21/35 (60%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
+ +E ++ ++ E+K + K K++ +K+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 0.51
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK 216
Q ++ +++R+ EE+ + + +EK ++++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 0.56
Identities = 7/35 (20%), Positives = 21/35 (60%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEK 219
+ K +K+ E E++ + + K++ +KE+ +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.1 bits (68), Expect = 0.64
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
+ K ++ E EE+ + K ++K EK++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.1 bits (68), Expect = 0.69
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKK 222
+ ++ ++ + EEK K K+K +K+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.1 bits (68), Expect = 0.79
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK 220
+ ++ +K E +E+ ++ + KEK ++++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.7 bits (67), Expect = 0.86
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK 213
+ + +KR+ +K K ++K EK++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.0 bits (60), Expect = 6.3
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K+ ++ ++ E+K ++ K K+K + E +
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 26.6 bits (59), Expect = 8.6
Identities = 7/35 (20%), Positives = 20/35 (57%)
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K+ +K + +EK ++ K ++K +K+ ++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 35.0 bits (80), Expect = 0.016
Identities = 12/90 (13%), Positives = 43/90 (47%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
+ ++ E ++ E+ KEE ++ + + + ++ + + E +K++ + +
Sbjct: 12 NKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEV 71
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
++++ +EE ++ K++ + +DE
Sbjct: 72 RRKRLAIQEEIISSVLEEVKRRLETMSEDE 101
Score = 31.9 bits (72), Expect = 0.13
Identities = 11/70 (15%), Positives = 35/70 (50%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
E ++ ++ + K + + +++ +K K+E ++ + K + + K + + +K++
Sbjct: 5 ELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRII 64
Query: 266 KKKKDEGRRR 275
+ E RR+
Sbjct: 65 ANARLEVRRK 74
Score = 31.1 bits (70), Expect = 0.27
Identities = 6/70 (8%), Positives = 35/70 (50%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
E ++ ++ + K + + +++ +K K++ ++ + K + ++ + + + +K++
Sbjct: 5 ELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRII 64
Query: 262 KKEKKKKKDE 271
+ + + +
Sbjct: 65 ANARLEVRRK 74
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 34.4 bits (78), Expect = 0.019
Identities = 21/96 (21%), Positives = 41/96 (42%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K + ++++++ + EE K + +K + +K + K+KK
Sbjct: 63 KVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDI 122
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+KK +K + K K +K + KK K+ K KK
Sbjct: 123 EKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 32.8 bits (74), Expect = 0.054
Identities = 20/88 (22%), Positives = 43/88 (48%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+K+K++ + ++ ++K KK E +K ++ K+KK +KK+ +K
Sbjct: 71 QKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRK 130
Query: 248 KKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + K KK + KK K+ +G ++
Sbjct: 131 LQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 28.6 bits (63), Expect = 1.5
Identities = 18/97 (18%), Positives = 43/97 (44%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ K+ + ++KK+ E+ +K +K + +K ++ K++
Sbjct: 58 RRLWKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQK 117
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K ++K+ ++ + K+ K KK + KK K+ G +
Sbjct: 118 KANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAK 154
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 34.3 bits (78), Expect = 0.019
Identities = 21/98 (21%), Positives = 43/98 (43%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK + ++ ++KR R+ K + + ++ ++ + K ++E+ K+ KK K
Sbjct: 60 KKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAK 119
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ KK K K K+K K + + G+R
Sbjct: 120 QASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
Score = 32.7 bits (74), Expect = 0.064
Identities = 20/103 (19%), Positives = 43/103 (41%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
Y+ K+ + + +K++ +R + + K+ +K + +K + ++ + K+
Sbjct: 55 YRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KK ++ KK K K K+K K K G +R
Sbjct: 115 AKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 35.3 bits (80), Expect = 0.019
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E +K ++ K RK+E EKE EKK E K K + + + + +K E K+ +
Sbjct: 611 EVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANR 670
Query: 239 KKKKKE-----KKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+ K K+E K +K K K+ K DE +
Sbjct: 671 DARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFK 710
Score = 33.3 bits (75), Expect = 0.083
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
++ KE K K + K ++ KK +K EK +K+E +K+ EKK E
Sbjct: 580 KDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLES 639
Query: 257 KKKKKKKEKKKKKDEGRR 274
K K K + K + ++
Sbjct: 640 KSGNKNKMEAKAQANSQK 657
Score = 29.9 bits (66), Expect = 1.2
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE--KKKEKKKKKKK 234
KE + K + + +E K+ +K +K +K+E +KE KK E K K
Sbjct: 586 NKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKN 645
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K E K + +K + ++ + + + +G +R
Sbjct: 646 KMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKR 686
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 34.8 bits (79), Expect = 0.019
Identities = 12/79 (15%), Positives = 36/79 (45%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
++ K + + ++ + + + + + EK E + ++K+ K +E K+ +
Sbjct: 107 EKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQ 166
Query: 249 KEEKKKEKKKKKKKKEKKK 267
+ E K+ + +EK++
Sbjct: 167 MQAFVSESKRAAELEEKRR 185
Score = 33.3 bits (75), Expect = 0.057
Identities = 9/82 (10%), Positives = 30/82 (36%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R + + + + EK + + K+ + + + + + +K + +
Sbjct: 85 RHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWR 144
Query: 240 KKKKEKKKKKEEKKKEKKKKKK 261
++K K +E K+ + +
Sbjct: 145 MERKRDKNAREMKESVNRLHAQ 166
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 34.6 bits (80), Expect = 0.022
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 84 SSGGPGAGGG---GGGKSESTTAPSVLP 108
S GG GGG GG + T +P+++
Sbjct: 125 SGGGGSGGGGSGGGGSQIVLTQSPAIMS 152
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 35.0 bits (80), Expect = 0.024
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKK--------EKKKKEKKKEKKKKKKKKKEKKKKK 242
+ K + E + + +EK E K+K KKK+E K+ K+ ++ +K K
Sbjct: 495 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKM 554
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ K + + KK +K + +
Sbjct: 555 YSEFKSIKPEVYLKKYSEKCSNLNFEDE 582
Score = 34.2 bits (78), Expect = 0.041
Identities = 11/86 (12%), Positives = 29/86 (33%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+R + + + K E +++ + K + + K + K+ + +K K+
Sbjct: 189 LERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKE 248
Query: 250 EEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K + K + K
Sbjct: 249 NAENYLIKISENKNDAKVSLLLNNCD 274
Score = 33.4 bits (76), Expect = 0.071
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 12/96 (12%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKK------------KEKKKEKKKEKKKKEKKKEKKKKKK 233
+ + + + + E +E+ E+ +KK+E K+ K+ ++ ++ K
Sbjct: 495 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKM 554
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ K K + KK EK + + KE+
Sbjct: 555 YSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHSD 590
Score = 32.6 bits (74), Expect = 0.14
Identities = 13/65 (20%), Positives = 29/65 (44%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+KK+E K+ K+ ++ ++ K + K + + K+ +K E + K++
Sbjct: 530 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 589
Query: 265 KKKKK 269
K K
Sbjct: 590 DYKNK 594
Score = 32.6 bits (74), Expect = 0.14
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE--KKKKKKKKKEKKKKKKEKKKKKEEK 252
+++ K E + + KEK E K+K KE KKK++ K+ K+ ++ +K +
Sbjct: 495 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKM 554
Query: 253 KKEKKKKKKKKEKKKKKDE 271
E K K + KK ++
Sbjct: 555 YSEFKSIKPEVYLKKYSEK 573
Score = 32.3 bits (73), Expect = 0.19
Identities = 15/73 (20%), Positives = 32/73 (43%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+KKEE K+ ++ +E +K + E K + + KK +K + + K++
Sbjct: 530 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 589
Query: 251 EKKKEKKKKKKKK 263
+ K + + K
Sbjct: 590 DYKNKCTMCPEVK 602
Score = 30.7 bits (69), Expect = 0.56
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
++KEE K+ K+ ++ ++ K E K K + KK +K + + +E+
Sbjct: 530 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 589
Query: 256 KKKKKKKKEKKKK 268
K K + K
Sbjct: 590 DYKNKCTMCPEVK 602
Score = 29.9 bits (67), Expect = 0.94
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 197 EEKEEEKKEEKKKEKKKEKKK-EKKKKEKKKEKKKKKKKKK--EKKKKKKEKKKKKEEKK 253
E ++ ++K K + K + ++K E K+K K+ KKK++ K+ K+ ++
Sbjct: 487 SEWGDDYCQDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEY 546
Query: 254 KEKKKKKKKKEKKKKKDEG 272
++ K E K K E
Sbjct: 547 QKGNNYKMYSEFKSIKPEV 565
Score = 29.2 bits (65), Expect = 1.6
Identities = 14/73 (19%), Positives = 31/73 (42%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+K+EE ++ K+ ++ +K K + K K + KK +K + + +++
Sbjct: 530 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 589
Query: 257 KKKKKKKEKKKKK 269
K K + K
Sbjct: 590 DYKNKCTMCPEVK 602
Score = 28.0 bits (62), Expect = 3.8
Identities = 10/71 (14%), Positives = 29/71 (40%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
++K+ K+ ++ ++ ++ + E K K + K+ +K + + K++
Sbjct: 530 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 589
Query: 239 KKKKKEKKKKK 249
K K +
Sbjct: 590 DYKNKCTMCPE 600
Score = 28.0 bits (62), Expect = 4.1
Identities = 14/72 (19%), Positives = 25/72 (34%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+E E E+ K K K K + +K+ + + K + KE
Sbjct: 181 KEWHGEFLLERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEY 240
Query: 257 KKKKKKKEKKKK 268
+ +K KE +
Sbjct: 241 ETQKVPKENAEN 252
Score = 27.2 bits (60), Expect = 6.9
Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK--EEKKKEKKKKKKKKEKKKKKDEGRR 274
++K K + + + K+K ++ K+K K+ +KK+E K+ K+ ++ +K + +
Sbjct: 495 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKM 554
Query: 275 R 275
Sbjct: 555 Y 555
Score = 26.9 bits (59), Expect = 8.2
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+E KQ ++ + ++ + + + K + KK +K E + K++
Sbjct: 533 KEEYNKQ---AKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 589
Query: 237 EKKKKKKEKKKKK 249
+ K K + K
Sbjct: 590 DYKNKCTMCPEVK 602
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 34.6 bits (80), Expect = 0.025
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 84 SSGGPGAGGGGGGKSES----TTAPSVLP 108
SSGG G+GGGG G S T +P+ L
Sbjct: 118 SSGGGGSGGGGSGGGGSETTLTQSPATLS 146
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 34.9 bits (80), Expect = 0.026
Identities = 19/95 (20%), Positives = 35/95 (36%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
KK KQ + K + E+ + + +K K K++ E + +
Sbjct: 633 KKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICNVDDNCRSQNN 692
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+KKK K+ + K K + K K K+ +
Sbjct: 693 KKKKDIVTILLKELKDKIVSCKNQHKATKGKECCD 727
Score = 33.3 bits (76), Expect = 0.083
Identities = 16/78 (20%), Positives = 28/78 (35%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
++ + K +++ E + + KKK+ K+ K K K + K K
Sbjct: 663 RKSIDNFHVLKNKEEYEICNVDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKG 722
Query: 254 KEKKKKKKKKEKKKKKDE 271
KE K K D+
Sbjct: 723 KECCDKLPKIADGDTSDD 740
Score = 30.6 bits (69), Expect = 0.61
Identities = 11/71 (15%), Positives = 26/71 (36%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+K++E + KK K+ + K K + E +K + K+E +
Sbjct: 623 NKKEKEWGQIKKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICN 682
Query: 261 KKKEKKKKKDE 271
+ + ++
Sbjct: 683 VDDNCRSQNNK 693
Score = 30.2 bits (68), Expect = 0.87
Identities = 16/74 (21%), Positives = 26/74 (35%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+KE+E + KK K+ + K K + + K K KEE +
Sbjct: 623 NKKEKEWGQIKKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICN 682
Query: 257 KKKKKKKEKKKKKD 270
+ + KKK
Sbjct: 683 VDDNCRSQNNKKKK 696
Score = 28.7 bits (64), Expect = 2.8
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKK--EKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
KKE+E + +K K+ + K K E + +K K K+E +
Sbjct: 624 KKEKEWGQIKKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICNV 683
Query: 251 EKKKEKKKKKKKK 263
+ + KKKK
Sbjct: 684 DDNCRSQNNKKKK 696
Score = 28.7 bits (64), Expect = 2.8
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK--KKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ KEE E + + KK+K K+ K K K + K K K+ +K
Sbjct: 670 HVLKNKEEYEICNVDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKGKECCDKL 729
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K + ++++ + K +
Sbjct: 730 PKIADGDTSDDEEQEDEAPAPPKPKPPST 758
Score = 27.9 bits (62), Expect = 4.1
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEK--KKEKKKEKKKKEK 224
DN K + + + + + + KK++ K+ K K K +
Sbjct: 657 DNEADVRKSIDNFHVLKNKEEYEICNVDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQ 716
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K K K+ K K + +E++ + K K
Sbjct: 717 HKATKGKECCDKLPKIADGDTSDDEEQEDEAPAPPKPKPPSTP 759
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 34.7 bits (79), Expect = 0.029
Identities = 9/58 (15%), Positives = 27/58 (46%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++K KE +++++ KK ++ K++ K K+ + +K + +++
Sbjct: 395 QKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEK 452
Score = 33.9 bits (77), Expect = 0.047
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE------KKKKKEEKKKEKKK 258
E K + +K + + K + + +KK KE ++ + KK +++ K+E K
Sbjct: 368 ESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANK 427
Query: 259 KKKKKEKKKKKDE 271
KK + +E
Sbjct: 428 AMGKKTSEGVTNE 440
Score = 32.3 bits (73), Expect = 0.17
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK--KK 241
RR + + + E K + +K + + K + + +KK ++ ++ ++ KK
Sbjct: 356 RRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E+ K+E K KK + +K D
Sbjct: 416 FAEQDAKEEANKAMGKKTSEGVTNEKGTDS 445
Score = 32.0 bits (72), Expect = 0.18
Identities = 9/58 (15%), Positives = 28/58 (48%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+++ K+ +++++ +K E+ K++ K KK E ++ + +++K
Sbjct: 395 QKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEK 452
Score = 31.2 bits (70), Expect = 0.36
Identities = 13/65 (20%), Positives = 29/65 (44%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ + +KK ++ E+ ++ KK ++ +++ K KK E EK +
Sbjct: 388 RLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQA 447
Query: 263 KEKKK 267
E++K
Sbjct: 448 MEEEK 452
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 34.9 bits (80), Expect = 0.029
Identities = 15/97 (15%), Positives = 35/97 (36%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E R R + + E K K K + +K + + + + E
Sbjct: 77 EARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEV 136
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+++ + + + EK EK++ + +K K + +
Sbjct: 137 QRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTY 173
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase
subunit A', DNA-directed...; transcription, fusion
protein, chimera protein, multiprotein; 3.30A
{Pyrococcus furiosus}
Length = 436
Score = 34.7 bits (80), Expect = 0.030
Identities = 14/71 (19%), Positives = 30/71 (42%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
EE E+ +K E + + + + K+ +K KE+ + K EK E +
Sbjct: 171 DEEIEEYMKKIELARNRRSEFNEIIKEIHKKAKERMVCPHCGAPQYPIKFEKPTIYWEIR 230
Query: 254 KEKKKKKKKKE 264
K+++ + +
Sbjct: 231 KDEQGNEYRHR 241
Score = 30.0 bits (68), Expect = 0.89
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
E+ +E K+ + ++ + + K+ KK K++ + K +K + +
Sbjct: 171 DEEIEEYMKKIELARNRRSEFNEIIKEIHKKAKERMVCPHCGAPQYPIKFEKPTIYWEIR 230
Query: 269 KDE 271
KDE
Sbjct: 231 KDE 233
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 33.9 bits (77), Expect = 0.032
Identities = 17/99 (17%), Positives = 44/99 (44%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+ K+ RK +E++ + + + +K K K + ++ ++K+ +
Sbjct: 131 KRLGPKRANNIRKFFGLSKEDDVRDFVIRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQ 190
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K + + +++ + + K+ E+K +K E R+R
Sbjct: 191 RALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKR 229
Score = 30.5 bits (68), Expect = 0.46
Identities = 12/87 (13%), Positives = 41/87 (47%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K+ + R++ + ++ K K + ++ ++K+ ++ + + + +++ +
Sbjct: 149 KEDDVRDFVIRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEY 208
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ K+ E+K EK + +K++ K
Sbjct: 209 AQLLAKRLSERKAEKAEIRKRRASSLK 235
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 34.5 bits (80), Expect = 0.032
Identities = 13/76 (17%), Positives = 36/76 (47%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G K R + K +++ ++ ++K+ + ++ EK + E++ ++ + KK
Sbjct: 382 GSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKK 441
Query: 236 KEKKKKKKEKKKKKEE 251
K+K+ +E + +
Sbjct: 442 SWKEKQGQENSEVTVD 457
Score = 31.0 bits (71), Expect = 0.42
Identities = 9/68 (13%), Positives = 35/68 (51%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ R + K+ E+K ++ +++K + ++ ++ + ++ +++ ++ KK
Sbjct: 384 KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443
Query: 250 EEKKKEKK 257
+EK+ ++
Sbjct: 444 KEKQGQEN 451
Score = 28.3 bits (64), Expect = 2.9
Identities = 12/68 (17%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK-KKEKKKKKEEKKKEKKKKKKKKEK 265
K + + K+ E+K ++ +K+K + ++ +K + E++ ++ + KK
Sbjct: 384 KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443
Query: 266 KKKKDEGR 273
K+K+ +
Sbjct: 444 KEKQGQEN 451
Score = 27.9 bits (63), Expect = 4.1
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK-EKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K+ E+K E +KEK + ++ EK ++ +++ E+ ++ KK K+K+
Sbjct: 388 RSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQ 447
Query: 265 KKKK 268
++
Sbjct: 448 GQEN 451
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 34.4 bits (78), Expect = 0.033
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKK----EKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
QR + R E ++ + K + + K + KKK++
Sbjct: 488 QRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQ 547
Query: 239 KKKKKEKKKKKEEKKKEK 256
++ + E+ K
Sbjct: 548 VTAQEIFQDNHEDGPTAK 565
Score = 27.5 bits (60), Expect = 5.5
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K + K K E KKK + ++ +D
Sbjct: 520 AEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDN 557
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 33.5 bits (76), Expect = 0.033
Identities = 19/102 (18%), Positives = 43/102 (42%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
+ + K + +++ ++ K + K++ K + ++ ++EK K
Sbjct: 52 TVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKA 111
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K+KKK +K +K +K K + K K++ K +K
Sbjct: 112 NKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAAT 153
Score = 28.5 bits (63), Expect = 1.7
Identities = 20/96 (20%), Positives = 44/96 (45%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K ++++ R+ + K+ +E KK +K K ++ + K+++
Sbjct: 35 KSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERR 94
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K + +K ++K K K+K+K +K +K +K K
Sbjct: 95 SLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKS 130
Score = 28.2 bits (62), Expect = 2.2
Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK-------EKKKEKKKEKKKKEKK 225
+K K RR ++ KK E+ +K+ K + KE++ + +
Sbjct: 40 FKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPE 99
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K +++K K K+KKK +K ++ +K + + K K++ ++
Sbjct: 100 VRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQK 149
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.09A {Plasmodium falciparum}
Length = 305
Score = 34.0 bits (78), Expect = 0.044
Identities = 12/85 (14%), Positives = 26/85 (30%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
++ K ++ + E E + +K +E K+K + ++ K
Sbjct: 204 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 263
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKK 268
K K + EK +
Sbjct: 264 NNDKINYTDIKTLSPSEYLIEKCPE 288
Score = 33.3 bits (76), Expect = 0.078
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE-EKKKEKK 257
+E EK K K+ + + + KK ++ K+K E ++ K
Sbjct: 204 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 263
Query: 258 KKKKKKEKKKKKDE 271
K K
Sbjct: 264 NNDKINYTDIKTLS 277
Score = 27.1 bits (60), Expect = 5.8
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++K E ++ K K K + ++ + K KK + + +
Sbjct: 250 NKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLIEKCPECKCTKKNLQDVFELTFD 305
Score = 27.1 bits (60), Expect = 7.0
Identities = 9/71 (12%), Positives = 24/71 (33%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
++ EK K K+ + + + + KK ++ + K + ++ K
Sbjct: 204 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 263
Query: 263 KEKKKKKDEGR 273
K + +
Sbjct: 264 NNDKINYTDIK 274
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 33.8 bits (77), Expect = 0.045
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+R + E+ E K EKK K + + + K+K +K K+ +KK++ K+
Sbjct: 246 IERLRYEQNIREACTINGKNEKKCINSKSGQGDKIQGACKRKCEKYKKYISEKKQEWDKQ 305
Query: 250 EEKKKEKKKKKKKKEKKKKK 269
+ K + K K + K+
Sbjct: 306 KTKYENKYVGKSASDLLKEN 325
Score = 33.1 bits (75), Expect = 0.089
Identities = 17/94 (18%), Positives = 34/94 (36%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+E + K+ + + ++ + K+K +K +K +KK+E K+K K + K
Sbjct: 256 REACTINGKNEKKCINSKSGQGDKIQGACKRKCEKYKKYISEKKQEWDKQKTKYENKYVG 315
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K+ E + K
Sbjct: 316 KSASDLLKENYPECISANFDFIFNDNIEYKTYYP 349
Score = 31.5 bits (71), Expect = 0.26
Identities = 13/61 (21%), Positives = 17/61 (27%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
EKK+E K+K K E K K KE + + K
Sbjct: 296 SEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKTYYPYGDYSS 355
Query: 269 K 269
Sbjct: 356 I 356
Score = 30.0 bits (67), Expect = 0.77
Identities = 15/93 (16%), Positives = 33/93 (35%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K ++ K + ++ + K++ +K +K +KK++ K+K K + K K
Sbjct: 260 TINGKNEKKCINSKSGQGDKIQGACKRKCEKYKKYISEKKQEWDKQKTKYENKYVGKSAS 319
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K+ + + K D
Sbjct: 320 DLLKENYPECISANFDFIFNDNIEYKTYYPYGD 352
Score = 28.8 bits (64), Expect = 1.7
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE---EKKKEKKKK 259
+ + ++ +E K EKK K + K + K++ +K K+ EKK+E K+
Sbjct: 246 IERLRYEQNIREACTINGKNEKKCINSKSGQGDKIQGACKRKCEKYKKYISEKKQEWDKQ 305
Query: 260 KKKKEKKKKKDE 271
K K E K
Sbjct: 306 KTKYENKYVGKS 317
Score = 28.4 bits (63), Expect = 2.7
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 2/99 (2%)
Query: 165 CGDNLEYGYKGGKKERRKQRRRKRKRKRK-KEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
C N + K + + + + KRK ++ ++ EKK+E K+K K + + K
Sbjct: 259 CTINGKNEKKCINSKSGQGDKIQGACKRKCEKYKKYISEKKQEWDKQKTK-YENKYVGKS 317
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K+ + + +
Sbjct: 318 ASDLLKENYPECISANFDFIFNDNIEYKTYYPYGDYSSI 356
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 33.3 bits (75), Expect = 0.047
Identities = 10/64 (15%), Positives = 30/64 (46%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ +R+ +E K + E ++ +K K ++ K+ ++++ + + + K+
Sbjct: 112 NRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT 171
Query: 248 KKEE 251
K+E
Sbjct: 172 KQEA 175
Score = 31.0 bits (69), Expect = 0.30
Identities = 7/48 (14%), Positives = 25/48 (52%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K ++ E ++ +K+K ++ K+ +++ + + + K+ K++
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
Score = 30.6 bits (68), Expect = 0.33
Identities = 9/64 (14%), Positives = 33/64 (51%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
++E + ++ K+ + E + +K+K ++ K+ ++++ + + + K+ K++
Sbjct: 115 RREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQE 174
Query: 268 KKDE 271
D+
Sbjct: 175 ADDD 178
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 34.3 bits (78), Expect = 0.047
Identities = 10/95 (10%), Positives = 18/95 (18%), Gaps = 6/95 (6%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K +R R K K K +
Sbjct: 118 DSSNPKFNDTQRYRDPKNRLNAVWNVCK------TKMVCDTGLSAGSDNFDLSNPSANMG 171
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +K+ + K+ K E +
Sbjct: 172 HGGCGAAQPTIRKDGLRLWGSWKRGKDESDLPEKR 206
Score = 32.7 bits (74), Expect = 0.14
Identities = 6/92 (6%), Positives = 21/92 (22%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+ + K + ++ + K K K
Sbjct: 114 KLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHG 173
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ +K+ + ++ K + + +
Sbjct: 174 GCGAAQPTIRKDGLRLWGSWKRGKDESDLPEK 205
Score = 32.4 bits (73), Expect = 0.17
Identities = 6/91 (6%), Positives = 18/91 (19%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+K K + + + + ++ K + K K
Sbjct: 102 KKILECVCWNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNF 161
Query: 241 KKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ +K+ +
Sbjct: 162 DLSNPSANMGHGGCGAAQPTIRKDGLRLWGS 192
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 34.2 bits (78), Expect = 0.047
Identities = 12/81 (14%), Positives = 32/81 (39%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E+E++ E + + + K++ KE ++ + + + EK+ K K
Sbjct: 103 EDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKIL 162
Query: 255 EKKKKKKKKEKKKKKDEGRRR 275
++ + ++ + E R
Sbjct: 163 TEEDLQMRRLATALQKEIGER 183
Score = 33.0 bits (75), Expect = 0.11
Identities = 13/99 (13%), Positives = 37/99 (37%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
G++ + + + +R + K +K +EK ++ +E + + + +K+
Sbjct: 91 GERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDI 150
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
K K +E+ + + +KE ++
Sbjct: 151 LNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETV 189
Score = 32.2 bits (73), Expect = 0.19
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 174 KGGKKERRKQRRRKRK--RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
K K + K + + E + E++K+ K + +E + ++
Sbjct: 114 KYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLA 173
Query: 232 KKKKKEKKKKKKEKKKKKEE--KKKEKKKKKKKKEKKKKKDE 271
+KE ++ + +E K + K + E+ ++E
Sbjct: 174 TALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEE 215
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 33.0 bits (75), Expect = 0.052
Identities = 8/78 (10%), Positives = 32/78 (41%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ + + +E E K E K + +EK K + ++ + + + + + +
Sbjct: 12 EAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATAR 71
Query: 251 EKKKEKKKKKKKKEKKKK 268
+ + + ++ ++ ++
Sbjct: 72 TQARGEVLEEVRRRVREA 89
Score = 33.0 bits (75), Expect = 0.066
Identities = 8/74 (10%), Positives = 34/74 (45%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+E E + + ++ + K + K++ ++K K + +++ + + + ++ E +
Sbjct: 8 SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLV 67
Query: 258 KKKKKKEKKKKKDE 271
+ + + + +E
Sbjct: 68 ATARTQARGEVLEE 81
Score = 30.3 bits (68), Expect = 0.52
Identities = 9/70 (12%), Positives = 30/70 (42%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
++ E E + ++ E K E K + +EK K + ++ + + + ++ + +
Sbjct: 8 SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLV 67
Query: 251 EKKKEKKKKK 260
+ + + +
Sbjct: 68 ATARTQARGE 77
Score = 29.5 bits (66), Expect = 0.77
Identities = 8/91 (8%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 181 RKQRRRKRKRKRKKEEEEKEE--EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
++ + + ++ E + E + EEK K + +++ + + + ++ + +
Sbjct: 8 SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLV 67
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ + + + E+ + + ++ + +K +
Sbjct: 68 ATARTQARGEVLEEVRRRVREALEALPQKPE 98
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 33.6 bits (76), Expect = 0.057
Identities = 13/92 (14%), Positives = 40/92 (43%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ + R + E+ + +K K+ K+ E K+ +K EK + ++
Sbjct: 114 QRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESH 173
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K +++ ++ +++ + K+ ++ K +
Sbjct: 174 AKADSSMSQEQLRKLQERVGRCTKEAEKMKTQ 205
Score = 32.9 bits (74), Expect = 0.089
Identities = 14/93 (15%), Positives = 39/93 (41%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
R R + ++ K ++ ++ KE + KK ++ +K + ++ K
Sbjct: 116 GAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAK 175
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+E+ +K +E+ K+ +K + + ++
Sbjct: 176 ADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQ 208
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 33.5 bits (77), Expect = 0.060
Identities = 2/56 (3%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKK-----KKKEEKKKEKKKKKKKKEKKKKK 269
++ + + E++++ + K +++ + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGR 320
Score = 33.5 bits (77), Expect = 0.066
Identities = 2/57 (3%), Positives = 16/57 (28%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++ + + ++E++ K + + + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 32.3 bits (74), Expect = 0.13
Identities = 4/57 (7%), Positives = 15/57 (26%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
R+ R + E +++ + K + + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 32.3 bits (74), Expect = 0.17
Identities = 2/57 (3%), Positives = 18/57 (31%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
++ + + ++E++ + K +++ + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 31.2 bits (71), Expect = 0.32
Identities = 0/57 (0%), Positives = 18/57 (31%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ + + +++++ + + + + + + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 30.4 bits (69), Expect = 0.68
Identities = 4/56 (7%), Positives = 16/56 (28%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++ + + +++ + K + + + + EGR
Sbjct: 266 RQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 30.0 bits (68), Expect = 0.77
Identities = 3/57 (5%), Positives = 16/57 (28%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
++ + E+++E + K + + + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 30.0 bits (68), Expect = 0.84
Identities = 1/55 (1%), Positives = 14/55 (25%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ + +++++ + + + E + + +
Sbjct: 267 QGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 29.2 bits (66), Expect = 1.3
Identities = 3/55 (5%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK--KKKKEEKKK 254
+ + E++++ + K + + + + E +
Sbjct: 267 QGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 29.2 bits (66), Expect = 1.5
Identities = 5/57 (8%), Positives = 17/57 (29%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
R+ R + E+E+E + + + + + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 27.7 bits (62), Expect = 4.0
Identities = 3/57 (5%), Positives = 18/57 (31%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
++ + + E E++ + + K +++ + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 26.9 bits (60), Expect = 7.2
Identities = 3/54 (5%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK--KKEKKKKK 249
+ + E+++E + K +++ + + + +
Sbjct: 267 QGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGR 320
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 33.5 bits (76), Expect = 0.061
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK--KKKKKEKKKKKKEKK 246
K + E+ +K +E +KK KK+ +KK+ + K +KK++ +KK
Sbjct: 228 KNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASF 287
Query: 247 KKKEEKKKE 255
+ +E+ E
Sbjct: 288 LRAQERAAE 296
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 33.5 bits (77), Expect = 0.061
Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 18/119 (15%)
Query: 174 KGGKKERRKQRRR---------------KRKRKRKKEEEEKEEEKKEEK---KKEKKKEK 215
G R QRRR K +R + E K+ K K+K KE
Sbjct: 17 TGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEA 76
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ + + ++ + K ++ ++ + K+ K + ++ ++ +E R
Sbjct: 77 DGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERD 135
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 33.8 bits (78), Expect = 0.063
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K E + + + K KKK + K+K++ + KKE +
Sbjct: 3 KAENYELYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEIN 52
Score = 33.4 bits (77), Expect = 0.094
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
GK E + + + + K +KK + K+KEK + KK+ + +
Sbjct: 2 GKAENYELYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEIND 53
Score = 33.0 bits (76), Expect = 0.12
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ + KKK + K+K+K + KKE + +
Sbjct: 18 PSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEIND 53
Score = 33.0 bits (76), Expect = 0.12
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 172 GYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
G + + + + +K+ + K+KEK + KKE + +
Sbjct: 2 GKAENYELYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEIND 53
Score = 32.6 bits (75), Expect = 0.13
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K KKK + K+K++ + K+E +
Sbjct: 15 GPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEIN 52
Score = 28.4 bits (64), Expect = 2.8
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K E + + + K ++K K+K+K + KK+
Sbjct: 3 KAENYELYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKE 48
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 33.5 bits (77), Expect = 0.064
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 15/111 (13%)
Query: 180 RRKQRRR---------------KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
R Q +R + +R R + + + + K +K +KK+ E
Sbjct: 20 RETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDES 79
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
E + + K+ + + K ++ K + R
Sbjct: 80 VPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFE 130
Score = 28.5 bits (64), Expect = 2.4
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
+E K ++E KK+KK+ E KKK + E + + +
Sbjct: 465 QELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 27.8 bits (62), Expect = 4.8
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K E++ KK+K++ + KKK + + + + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTD 513
Score = 27.0 bits (60), Expect = 8.7
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K ++E K++KK+ + KKK + + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQ 507
Score = 27.0 bits (60), Expect = 8.8
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K +++ KK+KK+ + KKK + + + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 33.1 bits (75), Expect = 0.069
Identities = 9/67 (13%), Positives = 25/67 (37%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E K+ + + + K++ K+ KK +++K E+ +
Sbjct: 237 ESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADD 296
Query: 265 KKKKKDE 271
+++D+
Sbjct: 297 DDEEEDD 303
Score = 33.1 bits (75), Expect = 0.075
Identities = 8/57 (14%), Positives = 20/57 (35%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ + + K++ K+ KK +++K ++ EE+ E
Sbjct: 248 RADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEEDDE 304
Score = 30.8 bits (69), Expect = 0.43
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKK------EKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
R EEE E+ + + KK E +K + + K KKE K+
Sbjct: 208 MRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRY 267
Query: 245 KKKK--KEEKKKEKKKKKKKKEKKKKKDE 271
KK E++K ++ D+
Sbjct: 268 NLKKLTYEQRKASLVERLNALNSSAGADD 296
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 33.5 bits (76), Expect = 0.072
Identities = 10/85 (11%), Positives = 34/85 (40%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K K+ E+ + + +++ + ++ +++ +
Sbjct: 551 PEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSR 610
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDE 271
K+K ++K+ K+ + E+K++ D+
Sbjct: 611 KRKLDEKENLSAKRSRIEQKEELDD 635
Score = 32.4 bits (73), Expect = 0.15
Identities = 10/86 (11%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
++ ++ E+ K + + +E+ ++ + ++++ +K
Sbjct: 552 EKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRK 611
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEG 272
+K +EK E K+ + ++K++ +
Sbjct: 612 RKLDEK--ENLSAKRSRIEQKEELDD 635
Score = 27.4 bits (60), Expect = 5.8
Identities = 9/96 (9%), Positives = 28/96 (29%), Gaps = 18/96 (18%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK-----------K 242
E+ ++ + E + ++ ++ + K +
Sbjct: 533 LHSEDLGKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDS 592
Query: 243 KEKKKKKEEKKKEKKKKKKKK-------EKKKKKDE 271
E+ E+++ +K+K K+ + E
Sbjct: 593 DEEDSSNNADVSEEERSRKRKLDEKENLSAKRSRIE 628
Score = 27.4 bits (60), Expect = 7.0
Identities = 9/87 (10%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ ++ K+ K ++ + +++ +++ ++E
Sbjct: 548 GDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEE 607
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ +K+K ++E K+ + ++KE
Sbjct: 608 RSRKRKL---DEKENLSAKRSRIEQKE 631
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 33.3 bits (75), Expect = 0.075
Identities = 21/87 (24%), Positives = 34/87 (39%)
Query: 168 NLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
N + + RR+QR K + E + + + E++K KK
Sbjct: 349 NPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAATVKKPS 408
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKK 254
K +KKK KK +K +K+ KK
Sbjct: 409 PSKARKKKLNKKGRKMAGRKRGRPKKM 435
Score = 32.5 bits (73), Expect = 0.13
Identities = 20/87 (22%), Positives = 38/87 (43%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K R +Q +R+++R+ + K E K + + +E+K KK
Sbjct: 349 NPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAATVKKPS 408
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K +KKK KK ++ +++ + KK
Sbjct: 409 PSKARKKKLNKKGRKMAGRKRGRPKKM 435
Score = 30.6 bits (68), Expect = 0.58
Identities = 15/96 (15%), Positives = 39/96 (40%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
+ + K + +EE++ ++++++ + K + + +
Sbjct: 334 TIDRTILENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSG 393
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++++ +K K +KKK KK +K GR+R
Sbjct: 394 AEEEKAGAATVKKPSPSKARKKKLNKKGRKMAGRKR 429
Score = 29.8 bits (66), Expect = 0.96
Identities = 17/96 (17%), Positives = 33/96 (34%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R + + E++E + +++E K K E K +
Sbjct: 336 DRTILENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAE 395
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
++K K+ + +KKK K+ +K R R
Sbjct: 396 EEKAGAATVKKPSPSKARKKKLNKKGRKMAGRKRGR 431
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 33.0 bits (76), Expect = 0.075
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ +E K K ++ KK + +KK
Sbjct: 230 HENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKK 273
Score = 32.2 bits (74), Expect = 0.16
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
++ + K +E KK + ++K K+
Sbjct: 241 DIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 31.8 bits (73), Expect = 0.19
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
+ + + ++ + K E+ + KK + EKK
Sbjct: 231 ENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKV 274
Score = 31.4 bits (72), Expect = 0.22
Identities = 4/45 (8%), Positives = 13/45 (28%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK 220
+ ++ + + + +E KK ++K
Sbjct: 230 HENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKV 274
Score = 30.7 bits (70), Expect = 0.40
Identities = 8/46 (17%), Positives = 14/46 (30%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
E ++ K+ K EE KK + ++K
Sbjct: 229 LHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKV 274
Score = 29.1 bits (66), Expect = 1.5
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
K + + K EE KK + EKK K+
Sbjct: 241 DIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
>3vuv_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.11A {Plasmodium falciparum}
Length = 339
Score = 33.3 bits (76), Expect = 0.078
Identities = 12/85 (14%), Positives = 26/85 (30%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
++ K ++ + E E + +K +E K+K + ++ K
Sbjct: 238 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 297
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKK 268
K K + EK +
Sbjct: 298 NNDKINYTDIKTLSPSEYLIEKCPE 322
Score = 32.5 bits (74), Expect = 0.11
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE-EKKKEKK 257
+E EK K K+ + + + KK ++ K+K E ++ K
Sbjct: 238 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 297
Query: 258 KKKKKKEKKKKKDE 271
K K
Sbjct: 298 NNDKINYTDIKTLS 311
Score = 27.2 bits (60), Expect = 7.4
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++K E ++ K K K + ++ + K KK + + +
Sbjct: 284 NKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLIEKCPECKCTKKNLQDVFELTFD 339
Score = 26.8 bits (59), Expect = 9.3
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE--KKKKKKK 262
EE +K K K+ + + + E +K ++ K+K ++ K
Sbjct: 238 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 297
Query: 263 KEKKKKKDEGR 273
K + +
Sbjct: 298 NNDKINYTDIK 308
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 31.5 bits (71), Expect = 0.100
Identities = 15/74 (20%), Positives = 32/74 (43%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K + + K++ K+ + K KK K+ E++ K +K K +K+ + +
Sbjct: 35 KSSKGDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKA 94
Query: 253 KKEKKKKKKKKEKK 266
E+ KK + +
Sbjct: 95 ALEEAKKVQIELDT 108
Score = 31.1 bits (70), Expect = 0.11
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K + + +K ++ + K KK K+ E++ K EK K +K + K
Sbjct: 35 KSSKGDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKA 94
Query: 263 KEKKKKK 269
++ KK
Sbjct: 95 ALEEAKK 101
Score = 30.8 bits (69), Expect = 0.16
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K + KK+ K+ + K KK K+ ++E K +K K E+ E K
Sbjct: 36 SSKGDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAA 95
Query: 262 KKEKKK 267
+E KK
Sbjct: 96 LEEAKK 101
Score = 29.6 bits (66), Expect = 0.47
Identities = 13/59 (22%), Positives = 26/59 (44%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
R +K ++ E K KK K+ +++ K ++ + +K + K +E KK
Sbjct: 43 IRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKK 101
Score = 29.2 bits (65), Expect = 0.58
Identities = 15/64 (23%), Positives = 26/64 (40%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K K + KK ++ E K KK K+ ++E K ++ K +K + K
Sbjct: 35 KSSKGDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKA 94
Query: 268 KKDE 271
+E
Sbjct: 95 ALEE 98
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase,
membrane pyrophosphotase, ION pump; 2.60A {Thermotoga
maritima} PDB: 4av6_A
Length = 735
Score = 32.9 bits (75), Expect = 0.11
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 58 MASVGRGAAESIAECQHQFR 77
+++V + A + + E + Q R
Sbjct: 572 ISAVTKAAMKMVDEIRRQAR 591
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 31.7 bits (72), Expect = 0.12
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK-KK 236
KER + +E + +E +E + K+ ++K ++ + +
Sbjct: 53 KERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTR 112
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K+++ K +K K + K + +E
Sbjct: 113 ASKERRLASKAQKSSVKAMRGKVRSGRE 140
Score = 27.8 bits (62), Expect = 2.4
Identities = 12/87 (13%), Positives = 34/87 (39%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E K+R + + +E + +E +E + K+ +KK ++ +
Sbjct: 50 EYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTR 109
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+ ++++ + +K K + K +
Sbjct: 110 PTRASKERRLASKAQKSSVKAMRGKVR 136
Score = 27.4 bits (61), Expect = 3.3
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K+ +KK + + KE++ K ++ K G+ R
Sbjct: 89 ARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVR 136
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc
metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis}
SCOP: d.92.1.14 d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A*
1pwq_A* 1pwv_A 1zxv_A* 1pwu_A* 1pww_A 3kwv_C
Length = 776
Score = 33.0 bits (74), Expect = 0.12
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEE--KKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
KK+ + +++ K + + EEK+ KK + E++KE +
Sbjct: 300 IEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNR 359
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ +KEK+ K+ K + ++ +
Sbjct: 360 IQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRLQDTGGL 398
Score = 30.7 bits (68), Expect = 0.52
Identities = 13/84 (15%), Positives = 33/84 (39%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+++ K+ + + E++KE + + +KEK+ KK K + + ++
Sbjct: 332 TEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQR 391
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKD 270
+ + K+ K+D
Sbjct: 392 LQDTGGLIDSPSINLDVRKQYKRD 415
Score = 30.3 bits (67), Expect = 0.76
Identities = 19/92 (20%), Positives = 39/92 (42%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE+ K + +++ ++ + ++E K+ K K + K +E KKE ++ +K
Sbjct: 12 KEKEKNKDENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLEKVPSDVL 71
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+ K K + K + + KKK
Sbjct: 72 EMYKAIGGKIYIVDGDITKHISLEALSEDKKK 103
Score = 29.6 bits (65), Expect = 1.2
Identities = 10/87 (11%), Positives = 33/87 (37%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+E+ ++ + + EEEKE + + +K+++ K+ K + + ++
Sbjct: 332 TEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQR 391
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ +++ K+ +
Sbjct: 392 LQDTGGLIDSPSINLDVRKQYKRDIQN 418
Score = 26.9 bits (58), Expect = 9.6
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
++KE+ + E ++K+E++ + ++E KE K K E K ++ KKE +K EK
Sbjct: 10 HVKEKEKNKDENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLEK 65
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 32.5 bits (73), Expect = 0.13
Identities = 12/80 (15%), Positives = 28/80 (35%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ K+R +++ + K +K + K +++K + K+ K +
Sbjct: 310 LNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKLSPE 369
Query: 237 EKKKKKKEKKKKKEEKKKEK 256
E K K K + +
Sbjct: 370 EAAKVKAAGKAWYKTMISDS 389
Score = 32.5 bits (73), Expect = 0.14
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKE--KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+E + K K+ K++EK+K K K +K + + K ++EK
Sbjct: 301 DEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLD 360
Query: 255 EKKKKKKKKEKKKKKDEGRR 274
K+ K +E K K G+
Sbjct: 361 SKRTKLSPEEAAKVKAAGKA 380
Score = 31.4 bits (70), Expect = 0.35
Identities = 12/77 (15%), Positives = 27/77 (35%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K K+ +++ K K +K E + K +++K K+ + ++
Sbjct: 312 KEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEA 371
Query: 234 KKKEKKKKKKEKKKKKE 250
K + K K +
Sbjct: 372 AKVKAAGKAWYKTMISD 388
Score = 30.2 bits (67), Expect = 0.74
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+K + + K +KEK K+ K +E K + K K D
Sbjct: 341 RKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDSD 390
Score = 29.4 bits (65), Expect = 1.1
Identities = 12/69 (17%), Positives = 21/69 (30%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
K K + ++ E + + +KEK K+ + +E K K K
Sbjct: 321 KNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKA 380
Query: 234 KKKEKKKKK 242
K
Sbjct: 381 WYKTMISDS 389
Score = 27.9 bits (61), Expect = 3.7
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+K K K K E + + +KEK + K+ + E+ K K
Sbjct: 320 RKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEK-LDSKRTKLSPEEAAKVKAAG 378
Query: 237 EKKKKKKEKKKKKEE 251
+ K E
Sbjct: 379 KAWYKTMISDSDYAE 393
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 32.7 bits (75), Expect = 0.13
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 2/85 (2%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ R+ EE +++ KK + + K
Sbjct: 112 RSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKW--A 169
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K+ + + + +K ++
Sbjct: 170 IAQLNYADMLKRVEPLRNELQKLED 194
Score = 32.0 bits (73), Expect = 0.22
Identities = 6/66 (9%), Positives = 20/66 (30%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R K ++ E + + ++ + + + +K ++
Sbjct: 137 REKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDA 196
Query: 240 KKKKEK 245
K ++K
Sbjct: 197 KDNQQK 202
Score = 27.7 bits (62), Expect = 4.6
Identities = 7/76 (9%), Positives = 20/76 (26%), Gaps = 12/76 (15%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K ++ E K + + K+ + +
Sbjct: 139 KMKKNYMSNP----------SYNYEIVNRASLAAGPMVKW--AIAQLNYADMLKRVEPLR 186
Query: 237 EKKKKKKEKKKKKEEK 252
+ +K ++ K ++K
Sbjct: 187 NELQKLEDDAKDNQQK 202
>2j3x_A C2 toxin component I; ADP-ribosyltransferase; 1.75A {Clostridium
botulinum} PDB: 2j3v_A 2j3z_A
Length = 431
Score = 32.6 bits (73), Expect = 0.14
Identities = 17/77 (22%), Positives = 30/77 (38%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K E E +E KEE+K+ K E+ + K K+ K K E
Sbjct: 11 INKPESEAKEWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEI 70
Query: 252 KKKEKKKKKKKKEKKKK 268
K+++ + E+ ++
Sbjct: 71 MKEDENQNLFDVERIRE 87
Score = 28.8 bits (63), Expect = 1.9
Identities = 13/71 (18%), Positives = 27/71 (38%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K E + KE KE++K K E+ + K ++ K K + +
Sbjct: 11 INKPESEAKEWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEI 70
Query: 261 KKKEKKKKKDE 271
K+++ + +
Sbjct: 71 MKEDENQNLFD 81
Score = 27.6 bits (60), Expect = 4.4
Identities = 13/73 (17%), Positives = 25/73 (34%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
K E + +E KE++K + E+ + K K+ K K E
Sbjct: 11 INKPESEAKEWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEI 70
Query: 257 KKKKKKKEKKKKK 269
K+ + + +
Sbjct: 71 MKEDENQNLFDVE 83
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 31.2 bits (71), Expect = 0.15
Identities = 7/45 (15%), Positives = 21/45 (46%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+ K E K K++++E++ + + + ++++EE
Sbjct: 91 RTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton
pumping; HET: DMU; 2.35A {Vigna radiata}
Length = 766
Score = 32.5 bits (74), Expect = 0.16
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 58 MASVGRGAAESIAECQHQFR 77
M SVG A + + E + QF
Sbjct: 594 MKSVGSAALKMVEEVRRQFN 613
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 32.3 bits (74), Expect = 0.18
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 22/104 (21%)
Query: 189 KRKRKKEEEEKE-------------EEKKEEKKKEKKKEKKKE---------KKKKEKKK 226
+ + EK ++ + K K K +E + K++
Sbjct: 570 EYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEE 629
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
EKK+ + K+E + +K ++K E +KK++KK+ + D
Sbjct: 630 EKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKDTEGDVD 673
Score = 29.6 bits (67), Expect = 1.2
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKK---------EKKKEKKKKEKKKEKKKKKKKK 235
+K +KE E ++K + +++K K E++ + +K K +
Sbjct: 526 AKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQG 585
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K ++ + + K + K ++
Sbjct: 586 MLNKAEEWLYDEGFDSIKAKYIAKYEELAS 615
Score = 28.8 bits (65), Expect = 2.2
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK----- 249
E+ E + K KK + +K E +K+ + + K E + +K
Sbjct: 499 EDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEE 558
Query: 250 -----EEKKKEKKKKKKKKEKKKK 268
K +E+ +K K
Sbjct: 559 YIYTLRGKLEEEYAPFASDAEKTK 582
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 32.0 bits (72), Expect = 0.19
Identities = 16/78 (20%), Positives = 32/78 (41%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ + + E +K+ K K E K ++ + + +K E+ K K+ K K
Sbjct: 213 MKHLKGQSNEAFQKQFSKWSKTLEAAKVDSVEKLFTKVHAEIRKNPERVKSTKKNDKPKR 272
Query: 251 EKKKEKKKKKKKKEKKKK 268
+ KK K ++K +
Sbjct: 273 DHKKFYPTKLTAAQRKDR 290
Score = 29.7 bits (66), Expect = 1.0
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKK 242
+ E K +K + K++ KK K ++K + K K + +
Sbjct: 256 KNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
Score = 27.0 bits (59), Expect = 7.6
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ + + E K KK +K K KK + ++K + K K + +
Sbjct: 248 TKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 31.6 bits (72), Expect = 0.19
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 84 SSGGPGAGGG----GGGKSESTTAPSVLPPTL 111
SSGG G+GGG GG + T AP L +
Sbjct: 132 SSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSP 163
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 32.1 bits (73), Expect = 0.20
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
R+ +E +E ++ ++ KK KK K K + K + K ++ K
Sbjct: 338 RQEFANNKEFQEASEKGYPVATPQKSKKAKKPKNKGTKYPGATKTNEIATKLEETK 393
Score = 26.7 bits (59), Expect = 9.8
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
R+ K+ +E E+ ++ KK KK + K + K + K ++ K
Sbjct: 338 RQEFANNKEFQEASEKGYPVATPQKSKKAKKPKNKGTKYPGATKTNEIATKLEETK 393
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 31.4 bits (72), Expect = 0.21
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K K++ + + + + +KE + KE +
Sbjct: 161 KPKREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 29.1 bits (66), Expect = 1.2
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K++ + + + + +KE + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 28.3 bits (64), Expect = 1.9
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
K+E + + + + +K+ + KE +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.5 bits (62), Expect = 3.6
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
K+E E + E + +K+ + KE +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 4.8
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K++ + + E + ++E + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 5.6
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K++ + + E + +K+ + KE +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 5.8
Identities = 4/31 (12%), Positives = 15/31 (48%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
K K++ + + + + +K+ + K+ +
Sbjct: 161 KPKREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 7.0
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K+E E + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.4 bits (59), Expect = 8.2
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
K++ + + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.4 bits (59), Expect = 8.8
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K+E + + + +K+ K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.4 bits (59), Expect = 10.0
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
K+E E + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 31.8 bits (72), Expect = 0.22
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K K+K+ + K +KK K K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 31.4 bits (71), Expect = 0.26
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 212 KKEKKKEKKKKEKK-----KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K+ K + + + K K+++ + K KKK + K K+ K
Sbjct: 325 KRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 30.6 bits (69), Expect = 0.47
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 216 KKEKKKKEKKKEKK-----KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K+ K ++ + + K K+K+ E K ++K K K K+ K
Sbjct: 325 KRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 29.9 bits (67), Expect = 0.97
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K K+ E K KKK K K K+ K
Sbjct: 345 VTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 29.5 bits (66), Expect = 1.2
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKK-----KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
E++ ++ K ++ + + K K+KE + K KKK K K +
Sbjct: 317 EERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFK 376
Query: 265 KKK 267
+ K
Sbjct: 377 RGK 379
Score = 29.5 bits (66), Expect = 1.3
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 225 KKEKKKKKKKK-----KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K ++ + + K K+K+ E K KKK K K K+
Sbjct: 328 SKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKR 377
Score = 29.1 bits (65), Expect = 1.7
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 220 KKKEKKKEKKKKK------KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
K+ K ++ + K K+++ + K KK+ K K K+ K
Sbjct: 325 KRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 27.9 bits (62), Expect = 3.9
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
K K K+ E K KKK K K K K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 27.6 bits (61), Expect = 4.9
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
K K+++ + K +KK + K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 27.6 bits (61), Expect = 5.4
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++K+ + K KK+ K K K+ K
Sbjct: 345 VTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 27.2 bits (60), Expect = 6.1
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K K+++ + K KKK + K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 27.2 bits (60), Expect = 6.9
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 179 ERRKQRRRKRKRKR-----KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+R + R+ + R K ++KE + K K+K K + K+ K
Sbjct: 325 KRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 26.8 bits (59), Expect = 7.7
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
++K+ + K KK+ K K ++ K
Sbjct: 345 VTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 26.8 bits (59), Expect = 7.7
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
++K+ + K K+K K + K+ K
Sbjct: 345 VTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.9 bits (71), Expect = 0.23
Identities = 11/95 (11%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK-KEKKKKKKKK 235
+ R++ + K++ K + E+ + K+ +++ K+ + +K +
Sbjct: 586 ADQARRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSE 645
Query: 236 KEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ K+K+ ++ E + + K ++ + +
Sbjct: 646 LDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQK 680
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 32.2 bits (72), Expect = 0.24
Identities = 17/76 (22%), Positives = 37/76 (48%)
Query: 165 CGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
C D +++G G K+ ++RR ++ +++E+ ++ E KK + K+KK+ +
Sbjct: 72 CKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDDNIPEMPSPKKMHQGKKKKQNKN 131
Query: 225 KKEKKKKKKKKKEKKK 240
+ + K KK
Sbjct: 132 RISWVGEAVKTDGKKS 147
>3pfy_A OTU domain-containing protein 5; structural genomics, structural
genomics consortium, SGC, PE C65 otubain, hydrolase;
HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Length = 185
Score = 31.3 bits (70), Expect = 0.24
Identities = 7/57 (12%), Positives = 20/57 (35%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
++ + E+E + + E E+++ +K + +K K+
Sbjct: 7 HSSGRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFIIKQ 63
Score = 30.5 bits (68), Expect = 0.37
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 179 ERRKQR-RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ + E+E E + +++E EK + KK
Sbjct: 2 HHHHHHSSGRENLYFQGAGYNSEDE-YEAAAARIEAMDPATVEQQEHWFEKALRDKKGFI 60
Query: 238 KKK 240
K+
Sbjct: 61 IKQ 63
Score = 26.6 bits (58), Expect = 7.8
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK--EKKKEKKKEKKKKEKKKEKKKK 231
R+ + ++E E + E +++E EK ++KK K+
Sbjct: 7 HSSGRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFIIKQ 63
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 31.3 bits (70), Expect = 0.24
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
+E+ ++ KK + K KE KK ++E KKK + K +KK KK + + + +
Sbjct: 112 QEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQ 168
Score = 31.3 bits (70), Expect = 0.29
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK--KKKEKKKKKKEKKKKKEEKKKEKK 257
+E+ +E KK + +K K+ K+ ++E KKK K +KK KK + + + + + +
Sbjct: 112 QEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDS 171
Query: 258 KKKKKKEKKKKKDEGRRR 275
+ +K +E ++
Sbjct: 172 ALQDVNDKYLLLEETEKQ 189
Score = 28.6 bits (63), Expect = 2.1
Identities = 17/90 (18%), Positives = 41/90 (45%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
+ + + +K + ++ KE KK ++ +KK K +KK KK + + + + +
Sbjct: 112 QEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDS 171
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ +K ++ +K+ +K +E R
Sbjct: 172 ALQDVNDKYLLLEETEKQAVRKALIEERGR 201
Score = 27.5 bits (60), Expect = 5.3
Identities = 15/79 (18%), Positives = 35/79 (44%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R + + ++ + +++ E+ K+ + K+ K+ KK ++ KKK K
Sbjct: 90 RSIEAKLRQFSSALIDCLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLK 149
Query: 240 KKKKEKKKKKEEKKKEKKK 258
+KK KK + + + +
Sbjct: 150 LQKKAKKVDAQGRGDIQPQ 168
Score = 27.1 bits (59), Expect = 6.1
Identities = 13/84 (15%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+K + K ++ K+ R++ +++ + K +KK +K + + + + +
Sbjct: 118 WKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVN 177
Query: 233 KKKKEKKKKKKEKKKK--KEEKKK 254
K ++ +K+ +K EE+ +
Sbjct: 178 DKYLLLEETEKQAVRKALIEERGR 201
Score = 27.1 bits (59), Expect = 6.6
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK--KKKKKKKEKKKKKKEKKKKKEEKK 253
+E+ EE KK + +K K+ +K ++E KK+ K +KK +K + + +
Sbjct: 112 QEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDS 171
Query: 254 KEKKKKKKKKEKKKKKDEGRRR 275
+ K ++ + + R+
Sbjct: 172 ALQDVNDKYLLLEETEKQAVRK 193
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 31.0 bits (70), Expect = 0.28
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+ +KE+KK+ +EKK+ + ++EK +E
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 30.6 bits (69), Expect = 0.42
Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 199 KEEEKKEEKKKEKKKEKKKEK-----KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ K+ + K+ + + +K++KK+ ++KK+ + +++K EE
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 30.3 bits (68), Expect = 0.49
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK-----EKKKKKKEKKKKKEEK 252
E + K +K + + K+ + K+ + + +K++KK+
Sbjct: 53 ESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLT 112
Query: 253 KKEKKKKKKKKEKKKKK 269
+EKK+ + ++EK ++
Sbjct: 113 SQEKKQIRLEREKFEED 129
Score = 28.3 bits (63), Expect = 2.4
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K+ + KE + K + +KE+KK+ +EKK+ + E
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLE 122
Score = 26.8 bits (59), Expect = 7.1
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
+ ++E+KK+ +EKK+ + + +K +E
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 26.8 bits (59), Expect = 7.2
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKK 220
+ ++E+K++ +EKK+ + + +K E+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for
eukaryotic structural genomics, UCH37, UCH-L5, ubiquitin
hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Length = 328
Score = 31.3 bits (70), Expect = 0.30
Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ ++ + +R+ EE + ++ + E K + E+ E +K K+ K
Sbjct: 225 SDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEE--EVQKLKRYKI 282
Query: 237 EKKKKKK--------------EKKKKKEEKKKEKKKKKKKKEKKKK 268
E ++K E ++ +K K+K+ KK ++ K
Sbjct: 283 ENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK 328
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 31.4 bits (70), Expect = 0.33
Identities = 10/102 (9%), Positives = 46/102 (45%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ER ++ R +++ R + E + + + + + +EK + +
Sbjct: 292 SSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRD 351
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+++ + + + ++++ ++ +++ ++ K+ E+ ++ R
Sbjct: 352 RERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEAR 393
Score = 28.7 bits (63), Expect = 2.1
Identities = 6/106 (5%), Positives = 35/106 (33%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
G E + E+K + +++ + ++++ + +++
Sbjct: 312 GGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRD 371
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + ++ ++ ++ E+ + + + + +D
Sbjct: 372 RDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMES 417
Score = 28.7 bits (63), Expect = 2.5
Identities = 15/124 (12%), Positives = 45/124 (36%)
Query: 152 RPKDLKREWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEK 211
R + R + + + +ER K + R RKR+ + E E++ +++
Sbjct: 252 RERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRG 311
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
E + + E+K + ++++ + + +++ ++ + +
Sbjct: 312 GGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRD 371
Query: 272 GRRR 275
R
Sbjct: 372 RDRD 375
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 31.4 bits (72), Expect = 0.34
Identities = 6/54 (11%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKK-------KKKKEKKKKKEEKKKEKKKKKKKK 263
+ ++++EK+ ++ ++ ++K +K ++ + EE + ++ ++ ++
Sbjct: 800 EWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAER 853
Score = 29.1 bits (66), Expect = 1.9
Identities = 10/59 (16%), Positives = 31/59 (52%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
E+ ++E++ KE ++ ++K ++K K+ E ++ + ++ ++ E+ +E
Sbjct: 799 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREA 857
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 29.6 bits (67), Expect = 0.36
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K+ E + K+ EK++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 29.6 bits (67), Expect = 0.38
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+ + E K+ +K+E KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 29.2 bits (66), Expect = 0.50
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
K+ + + K+ EK++ K+ K E
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 29.2 bits (66), Expect = 0.51
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
++ + + K+ +K++ KK K E
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.8 bits (65), Expect = 0.64
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K+ + + K+ +K++ KK K E
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.8 bits (65), Expect = 0.76
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
K+ + E K+ +K E KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.5 bits (64), Expect = 0.96
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K+ + + K+ +K++ KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.5 bits (64), Expect = 1.0
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
K+ + + K+ +K+E KK + +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.5 bits (64), Expect = 1.1
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
KE E + K+ +K+E KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.1 bits (63), Expect = 1.3
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
++ E + K+ EK++ KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.1 bits (63), Expect = 1.4
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
K+ + + K ++++ KK K E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.7 bits (62), Expect = 2.0
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ + E K+ +K + KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 27.3 bits (61), Expect = 2.2
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
+E E + K+ +K+E KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.9 bits (60), Expect = 3.0
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
++ + E K+ +K + K+ K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.9 bits (60), Expect = 3.1
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KE + E K+ + EK++ KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.5 bits (59), Expect = 4.0
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K+ + + K+ E+++ +K K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.5 bits (59), Expect = 4.7
Identities = 4/32 (12%), Positives = 14/32 (43%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
++ + E K+ ++++ K+ K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.5 bits (59), Expect = 4.8
Identities = 3/38 (7%), Positives = 14/38 (36%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
++ + + ++ +K++ +K K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.1 bits (58), Expect = 5.4
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+E E E K+ +K + KK K E
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.1 bits (58), Expect = 6.5
Identities = 4/38 (10%), Positives = 15/38 (39%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ + + K+ + +K++ KK + +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 25.8 bits (57), Expect = 7.4
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K+ + + ++ +K + KK K E
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 31.0 bits (70), Expect = 0.39
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKK--KKKKKKKEKKKKKKE---KKKKKEEKKK 254
+E + E K + KKE + +K + + K KK + K ++ +
Sbjct: 370 KELDESEVDKSEDSLVKKELEMSDKIINGDLLRFYEPKGFKKVNPSDYDYTKHDEDSSET 429
Query: 255 EKKKKKK 261
K + K
Sbjct: 430 SKDNEDK 436
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 198
Score = 30.7 bits (69), Expect = 0.39
Identities = 10/65 (15%), Positives = 21/65 (32%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+K +K + K + + + ++ + K KK KK K
Sbjct: 46 KKLHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYP 105
Query: 266 KKKKD 270
++ D
Sbjct: 106 RRILD 110
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 31.1 bits (70), Expect = 0.40
Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 16/112 (14%)
Query: 180 RRKQRRRKRKRKRKKEE--------EEKEE-----EKKEEKKKEKKKEKKKEKKKKEKKK 226
+ K + + + K + +K + K ++ K + +K K+
Sbjct: 843 MEDIKEIIEVAKIENAKRAYIYTAEDWKWKVAEVVSEKRDFKSSMEELMKDSEIRKHGKE 902
Query: 227 EKKKKKKKKKEKKKKKK---EKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K +K KE+ K E+K +E K+ +K+ + +D+G ++
Sbjct: 903 VAKIVQKLIKERTFDVKRINEEKALREAKEFMEKELGIEIIINPTEDKGGKK 954
Score = 30.7 bits (69), Expect = 0.64
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K K E E+ + +E K+ + K KE K +K K++ K+ E+K +E
Sbjct: 870 KWKVAEVVSEKRDFKSSMEELMKDSEIRKHGKEVAKIVQKLIKERTFDVKRINEEKALRE 929
Query: 251 EKKKEKKKKKKK--------KEKKKKK 269
K+ +K+ + K KKK+
Sbjct: 930 AKEFMEKELGIEIIINPTEDKGGKKKQ 956
Score = 29.6 bits (66), Expect = 1.5
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
KR K EE K+ E ++ K+ K +K K++ K ++K ++ K+ +KE
Sbjct: 878 SEKRDFKSSMEELMKDSEIRKHGKEVAKIVQKLIKERTFDVKRINEEKALREAKEFMEKE 937
Query: 245 KKKKKEEKKKEKKKKKKKK 263
+ E K KKK+
Sbjct: 938 LGIEIIINPTEDKGGKKKQ 956
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_C
Length = 389
Score = 30.9 bits (69), Expect = 0.40
Identities = 21/108 (19%), Positives = 37/108 (34%)
Query: 165 CGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
+ G K R R + E+ + K K +KK K K
Sbjct: 81 TPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKNWCKSKKKAFTKYALKYDSD 140
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
+K+ + + +K KK + + +K K K+KK + + G
Sbjct: 141 AGKKEIQLQLEKMKKYATIVRVIAHTQIRKMKGLKQKKAHLMEIQVNG 188
Score = 28.2 bits (62), Expect = 3.1
Identities = 18/105 (17%), Positives = 42/105 (40%)
Query: 167 DNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+++ + + +K+ K K + +KE + + EK K+ + + +K
Sbjct: 112 EDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIRKM 171
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K+KK + + K + + +K+ E +KDE
Sbjct: 172 KGLKQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDE 216
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 31.3 bits (71), Expect = 0.41
Identities = 10/73 (13%), Positives = 20/73 (27%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E + EE K +E ++ + + KK++ +
Sbjct: 167 ETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLP 226
Query: 239 KKKKKEKKKKKEE 251
EK+ K
Sbjct: 227 LAAWVEKEAYKPG 239
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A
{Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Length = 352
Score = 30.7 bits (69), Expect = 0.41
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKE 227
KKE + RR +R+ K ++ E K E ++ + K +
Sbjct: 85 KKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIK 135
Score = 27.7 bits (61), Expect = 4.4
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 175 GGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
G +K+ R R+ +R+ + ++ +E K E ++ + K K
Sbjct: 79 GCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIK 135
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 30.8 bits (69), Expect = 0.42
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
+R + +E+ +E K+ K + ++ +
Sbjct: 223 QRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
Score = 30.0 bits (67), Expect = 0.65
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKK 220
+R + +E KE ++ K E ++ +
Sbjct: 217 GLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 28.5 bits (63), Expect = 2.4
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 183 QRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
++ K +E +E K+ K + + +
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 28.1 bits (62), Expect = 2.6
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ K +E KE K+ K + + +
Sbjct: 224 RSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 28.1 bits (62), Expect = 3.1
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK 215
+R + +R KE ++ + E ++ +
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T
2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T
2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Length = 146
Score = 30.0 bits (68), Expect = 0.47
Identities = 7/40 (17%), Positives = 22/40 (55%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEK 215
++ RRK R +++ + + E +E+ ++ ++ K ++
Sbjct: 107 DREIRRKLRADRKRIDQDRAAERAAKEEAQKAQEPKASQE 146
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase;
18.00A {Escherichia coli} PDB: 2y7h_A*
Length = 464
Score = 30.9 bits (70), Expect = 0.47
Identities = 8/69 (11%), Positives = 21/69 (30%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ + E+ + K ++ K +K + + KK + + +
Sbjct: 181 STKARFEQIPQILKRFRQAVLGGAVNGKLTEKWRNFEPQHSVFKKLNFESILTELRNGLS 240
Query: 264 EKKKKKDEG 272
K + G
Sbjct: 241 SKPNESGVG 249
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 30.7 bits (68), Expect = 0.48
Identities = 12/62 (19%), Positives = 24/62 (38%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ K+ KE K+ + + + KK+E K K E ++ +KK+
Sbjct: 116 TQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQH 175
Query: 265 KK 266
+
Sbjct: 176 QT 177
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 30.8 bits (69), Expect = 0.55
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
++E+K K+EKK K+K++ + E
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 30.4 bits (68), Expect = 0.74
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
++EKK + K+EKK K+K+ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 29.2 bits (65), Expect = 1.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+++KK + KE+KK KEK+ + E
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 28.5 bits (63), Expect = 2.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
++EKK + KE+KK K+K+ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 28.5 bits (63), Expect = 3.0
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
+++KK K+EKK K+K++ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 28.5 bits (63), Expect = 3.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 214 EKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
++EKK K+EKK K+K+ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 27.3 bits (60), Expect = 6.1
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ EKK + KE+KK K+++ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus}
SCOP: a.45.1.1 c.47.1.5
Length = 206
Score = 30.1 bits (68), Expect = 0.55
Identities = 6/39 (15%), Positives = 8/39 (20%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+ K K + K K KK
Sbjct: 108 TALGFMTGDVDKPKTDVLLPARTKFLGFITKFLKKNSSG 146
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 29.9 bits (67), Expect = 0.59
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K E K+K E +K+ KK + + K+
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 29.1 bits (65), Expect = 1.1
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
K E K+K E KK+ +K + + K+
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 28.8 bits (64), Expect = 1.5
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
K E K+K + KK+ KK + K+
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 28.4 bits (63), Expect = 2.2
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K E K++ E +K+ KK + K+
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 28.0 bits (62), Expect = 2.4
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
K + K+K + KK KK + K+
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 28.0 bits (62), Expect = 2.4
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K + K + K+K E KK+ KK + K+
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 28.0 bits (62), Expect = 2.6
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
K + K K + KK+ KK + K+
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 27.2 bits (60), Expect = 4.3
Identities = 9/49 (18%), Positives = 16/49 (32%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K + K + K+K + KK+ KK + K+
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAA 196
Score = 26.8 bits (59), Expect = 5.8
Identities = 9/49 (18%), Positives = 16/49 (32%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
K E K + K+K + KK+ K+ + K+
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAA 196
Score = 26.8 bits (59), Expect = 7.4
Identities = 11/45 (24%), Positives = 14/45 (31%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K E K + K K + KK+ KK E K
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAK 192
>4dv8_A Lethal factor; endopeptidase, zinc dependent, hydrolase; HET: 0LX;
1.63A {Bacillus anthracis} PDB: 1yqy_A* 2l0r_A
Length = 526
Score = 30.6 bits (68), Expect = 0.61
Identities = 12/69 (17%), Positives = 27/69 (39%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+ E++KE + + +KEK+ KK K + + ++ + +
Sbjct: 97 DSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRLQDTGGLIDSPSINL 156
Query: 262 KKEKKKKKD 270
K+ K+D
Sbjct: 157 DVRKQYKRD 165
Score = 28.3 bits (62), Expect = 3.1
Identities = 13/66 (19%), Positives = 26/66 (39%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
EEK+ KK + E++KE + + +KEK+ K+ K + ++
Sbjct: 83 EEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRL 142
Query: 265 KKKKKD 270
+
Sbjct: 143 QDTGGL 148
Score = 26.8 bits (58), Expect = 8.4
Identities = 10/62 (16%), Positives = 23/62 (37%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ E++KE + + +K+KE KK K + + ++ +
Sbjct: 96 RDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRLQDTGGLIDSPSIN 155
Query: 269 KD 270
D
Sbjct: 156 LD 157
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 30.6 bits (70), Expect = 0.62
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ + K++K + ++ + + ++KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 30.2 bits (69), Expect = 0.74
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKK---KKKKKKEKKKK 268
+ + K+KK + +E + + ++KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 29.8 bits (68), Expect = 1.1
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ K+KK + K+ + + ++K+ KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 29.5 bits (67), Expect = 1.2
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+ E ++KK + K+ + ++ +E+K KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ + K+KK + KE + E +EKK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKF 239
Score = 28.7 bits (65), Expect = 2.5
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
E K+KK + + K+ + + +++K KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 28.7 bits (65), Expect = 2.5
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+ + K+KK E K+ + + E+KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 27.5 bits (62), Expect = 4.8
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKK---EKKKKKEEKKK 254
+ + K++K + KE + + E+KK +K
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 30.6 bits (69), Expect = 0.67
Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 5/75 (6%)
Query: 172 GYKGGKKERRKQRRRKRKR-----KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKK 226
+ + + ++ ++ E K E + K EK++
Sbjct: 1854 ALVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTT 1913
Query: 227 EKKKKKKKKKEKKKK 241
++ K ++
Sbjct: 1914 KQFSKTSQELIGNCI 1928
Score = 30.2 bits (68), Expect = 1.0
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 193 KKEEEEKEEEKKEEKKK-----EKKKE--KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
K K ++ +E ++ EK E K + K K +KE+ ++
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQ 1915
Query: 246 KKKKEEKKKEKKK 258
K ++
Sbjct: 1916 FSKTSQELIGNCI 1928
Score = 28.7 bits (64), Expect = 2.7
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K K ++ ++ ++ +K E K E K K +K+
Sbjct: 1857 KLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKER 1908
Score = 27.1 bits (60), Expect = 7.4
Identities = 7/70 (10%), Positives = 22/70 (31%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ K K + ++ ++ +K + + + K + +K++
Sbjct: 1853 RALVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNT 1912
Query: 264 EKKKKKDEGR 273
K+ K
Sbjct: 1913 TKQFSKTSQE 1922
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 29.8 bits (68), Expect = 0.67
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ +++ E +KK E+K ++ + ++K+K
Sbjct: 149 DQVLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 29.4 bits (67), Expect = 0.77
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+ +++ E +KK E+K ++ + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRKA 186
Score = 27.5 bits (62), Expect = 3.4
Identities = 6/37 (16%), Positives = 19/37 (51%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ +++ + EKK ++K ++ + ++K+K
Sbjct: 149 DQVLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 27.1 bits (61), Expect = 4.4
Identities = 5/35 (14%), Positives = 17/35 (48%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+++ + +KK ++K + + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 27.1 bits (61), Expect = 5.7
Identities = 6/43 (13%), Positives = 20/43 (46%)
Query: 232 KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
++ + EKK +++ ++ + ++++K G+R
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRKAGVGFGKR 193
Score = 26.7 bits (60), Expect = 6.3
Identities = 6/35 (17%), Positives = 19/35 (54%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ +E+ + +KK ++K E+ + ++++K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 26.7 bits (60), Expect = 6.5
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ +E+ + +KK E+K ++ + +K++
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 26.4 bits (59), Expect = 8.3
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
+++ + EKK E+K E+ + ++K+K
Sbjct: 156 REELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 26.4 bits (59), Expect = 8.7
Identities = 4/37 (10%), Positives = 19/37 (51%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+ +++ + +KK +++ E+ + ++++K
Sbjct: 149 DQVLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 26.4 bits (59), Expect = 9.9
Identities = 6/35 (17%), Positives = 19/35 (54%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ ++E + +KK ++K ++ E ++K++
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 30.3 bits (69), Expect = 0.70
Identities = 11/57 (19%), Positives = 28/57 (49%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
RK + +E E E +E+++E ++ + ++K+KK+K ++ + +
Sbjct: 40 RKMAPQVKEAVEAAVERVNSLSPEEQQQEMERLGLEITERKQKKRKGLRELAGVKGE 96
Score = 29.2 bits (66), Expect = 1.7
Identities = 7/57 (12%), Positives = 28/57 (49%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
++ + K+ + ++ +E++++ + + E+K++K+K ++ K +
Sbjct: 40 RKMAPQVKEAVEAAVERVNSLSPEEQQQEMERLGLEITERKQKKRKGLRELAGVKGE 96
Score = 28.0 bits (63), Expect = 3.5
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
RK + +E + ++ ++++++ E+ E + K+KK+K +E K E
Sbjct: 40 RKMAPQVKEAVEAAVERVNSLSPEEQQQEMERLGLEITERKQKKRKGLRELAGVKGE 96
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 29.6 bits (66), Expect = 0.71
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
EEK+KEK K ++KK+ + +++ +K +KK K + K
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT 198
Score = 29.2 bits (65), Expect = 0.99
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
E+K+KEK K +KKK+ +K+ ++ +KK +K E K
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT 198
Score = 29.2 bits (65), Expect = 1.2
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+EK+KEK K +KK++ + +++ +K EKK +K + K
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT 198
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 30.3 bits (69), Expect = 0.77
Identities = 12/87 (13%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 180 RRKQRRRKRKRKRKK-------EEEEKEEEKKEEKKKEKKKEKKKE----KKKKEKKKEK 228
+ +R K K + E + + K+ + + ++ + E +KK E E
Sbjct: 15 KNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDEL 74
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKE 255
K ++ ++ + + + ++ ++K
Sbjct: 75 LAKSREIVKRIGELENEVEELKKKIDY 101
Score = 28.7 bits (65), Expect = 2.0
Identities = 14/84 (16%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK--KKKKKKEKKKKK 242
+ ++ + E+ + +E + + + K K+ + + E+ K + K++KK E +
Sbjct: 15 KNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDEL 74
Query: 243 KEKKKKKEEKKKEKKKKKKKKEKK 266
K ++ ++ E + + ++ +KK
Sbjct: 75 LAKSREIVKRIGELENEVEELKKK 98
Score = 28.3 bits (64), Expect = 2.6
Identities = 7/54 (12%), Positives = 26/54 (48%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ + + K KE + + ++ + + +++KK E + K ++ ++ + +
Sbjct: 37 DTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELEN 90
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 30.0 bits (68), Expect = 0.77
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
R R + K + K K + + K K + ++ + E
Sbjct: 108 MRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIA-AQSPVELS 166
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDE 271
+ EE + KK+ +E K+K ++
Sbjct: 167 RMFEEVSGSIQYKKEYEELKEKIEK 191
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 29.5 bits (66), Expect = 0.85
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
EK++ K E++ +KKK +KK KK+K +E
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 27.6 bits (61), Expect = 3.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
EK++ K E++ +KKK +KK KK+K ++
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 27.6 bits (61), Expect = 3.3
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 174 KGGKKERRKQRRRKRKRKRKK----------EEEEKEEEKKEEKKKEKKKEKKKEKKKKE 223
K K RR R R E+E+ + +EE ++KK +KK KK+K
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Query: 224 KKKE 227
+E
Sbjct: 181 MARE 184
Score = 26.4 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 242 KKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K++ K EE+ +KKK +KK KK+K
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Score = 26.4 bits (58), Expect = 9.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 222 KEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
EK++ K +++ +KKK ++K KK++ +E
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 29.3 bits (65), Expect = 0.86
Identities = 12/88 (13%), Positives = 41/88 (46%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K +Q + + K ++ E + E ++E ++ ++ + + E + + K +++ +
Sbjct: 62 KIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRA 121
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+ +E K+ K + + +K +++
Sbjct: 122 QASDNREIDKRMNSLKPDLMQLRKIRDQ 149
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 30.3 bits (67), Expect = 0.88
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
E E ++ + +K K +++K K+ K + + K ++ +
Sbjct: 12 NEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQD 61
Score = 30.3 bits (67), Expect = 0.88
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
+ + K+ K +K K +KEK K K E + K ++ ++ KK
Sbjct: 12 NEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKK 65
Score = 28.8 bits (63), Expect = 2.5
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 229 KKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ + K+ K EK K ++EK K+ K E + + +
Sbjct: 12 NEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQ 57
Score = 28.4 bits (62), Expect = 2.8
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
E E ++ + +K K +KEK K+ K + + + ++ ++ KK
Sbjct: 12 NEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKK 65
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 30.2 bits (68), Expect = 0.89
Identities = 6/42 (14%), Positives = 18/42 (42%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
+++ + + ++E E EE++K E + ++
Sbjct: 981 KQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTH 1022
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 30.0 bits (67), Expect = 0.91
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K+E+ E + +K + K K KK
Sbjct: 11 SGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 29.6 bits (66), Expect = 1.5
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
K+E+ + K+ +K + K+ K KK
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 29.2 bits (65), Expect = 1.5
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K++E + + ++ + K K KK +E
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINE 52
Score = 28.8 bits (64), Expect = 2.3
Identities = 10/59 (16%), Positives = 19/59 (32%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K+++ + K +K E K K KK + + K G+
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTH 65
Score = 28.8 bits (64), Expect = 2.6
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+ K++E + + +K + K+ K KK
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 28.0 bits (62), Expect = 3.9
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K++E + K EK + + K ++
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 27.6 bits (61), Expect = 4.6
Identities = 12/60 (20%), Positives = 17/60 (28%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ K+E+ E K +K + K K KK E K K
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKT 64
Score = 27.6 bits (61), Expect = 4.7
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K++E + K+ +K + + K KK
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain,
protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Length = 265
Score = 29.5 bits (65), Expect = 0.92
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
+ KE K+ + + + KK+E K K E ++ +KK+ +
Sbjct: 120 ERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQ 176
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase
1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens}
SCOP: a.211.1.2
Length = 365
Score = 29.8 bits (67), Expect = 0.95
Identities = 7/51 (13%), Positives = 21/51 (41%)
Query: 181 RKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
K + + + R+ + + + + + K+ ++ K+K KE+
Sbjct: 311 SKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAAS 361
Score = 29.4 bits (66), Expect = 1.4
Identities = 8/54 (14%), Positives = 23/54 (42%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+E+ K + + + ++ + + + + K+ +E K+K KE+
Sbjct: 308 DEDSKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAAS 361
Score = 29.0 bits (65), Expect = 1.5
Identities = 5/58 (8%), Positives = 14/58 (24%)
Query: 159 EWLWGGCGDNLEYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKK 216
+ L + ++ + +E K+K K++
Sbjct: 304 QPLADEDSKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAAS 361
Score = 28.3 bits (63), Expect = 2.6
Identities = 6/48 (12%), Positives = 15/48 (31%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
K + + + + + K ++ K+K KE+
Sbjct: 314 KNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAAS 361
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 29.6 bits (66), Expect = 0.97
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+ EEK+KEK K +K+ K + K +K ++K + +
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEI 200
Score = 27.6 bits (61), Expect = 3.7
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ E+K+K+K K ++K+ K + + +K ++K + E
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAP 203
Score = 27.6 bits (61), Expect = 4.0
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ +EK+K+K K ++K+ K + K EK E+K + +
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAP 203
Score = 27.6 bits (61), Expect = 4.1
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
++ E+K+KEK K ++K+ + + K ++ ++K + E
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAP 203
Score = 27.2 bits (60), Expect = 4.5
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++ +EK+KEK K ++++ K + K +K E+K + +
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAP 203
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 29.3 bits (65), Expect = 0.97
Identities = 13/85 (15%), Positives = 39/85 (45%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ + K + +E+ K ++ + + +KE + K+++ + + K +++ E
Sbjct: 127 AERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVG 186
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDE 271
+K ++ KK++K E+ +
Sbjct: 187 RKDLLRRTIKKQRKYGAEECLQHHH 211
Score = 27.4 bits (60), Expect = 4.4
Identities = 14/83 (16%), Positives = 39/83 (46%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ +E + + +EK K K+ K +++ + K+ + + + K +++ E
Sbjct: 127 AERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVG 186
Query: 253 KKEKKKKKKKKEKKKKKDEGRRR 275
+K+ ++ KK++K +E +
Sbjct: 187 RKDLLRRTIKKQRKYGAEECLQH 209
>3ve2_A TBP-2, transferrin-binding protein 2; lipoprotein, transferrin
receptor, iron acquisition, vaccine candidate; 2.14A
{Neisseria meningitidis serogroup B} PDB: 3ve1_A 3v8u_A
Length = 658
Score = 30.0 bits (66), Expect = 0.98
Identities = 10/77 (12%), Positives = 21/77 (27%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+E E K E E K K+ K++K ++ + +
Sbjct: 22 GAEESEVKLNESDWEATGLPTKPKELPKRQKSVIEKVETDGDSDIYSSPYLTPSNHQNGS 81
Query: 252 KKKEKKKKKKKKEKKKK 268
+ K + +
Sbjct: 82 AGNGVNQPKNQATGHEN 98
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 29.5 bits (67), Expect = 1.0
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K ++K K K+ +++ +K+++E +KK + E K+K +
Sbjct: 10 KLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVD 53
Score = 28.8 bits (65), Expect = 2.0
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K +EK K K +++ +K+E++ +KK ++ + K+K ++
Sbjct: 10 KLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDK 54
Score = 27.6 bits (62), Expect = 4.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K +EK K K+ +++ EK++++ EKK + + K+K
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKD 51
Score = 26.8 bits (60), Expect = 8.1
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
K +EK K ++ +E+ +K++++ +KK
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKK 36
Score = 26.8 bits (60), Expect = 8.6
Identities = 10/46 (21%), Positives = 26/46 (56%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ ++K K ++ +++ EK++++ EKK + + K+K D+
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDK 54
>2wn4_A ADP-ribosyltransferase enzymatic component; CDTA, ACTIN-ADPRT,
binary toxin; 1.85A {Clostridium difficile} PDB: 2wn5_A
2wn7_A* 2wn8_A 2wn6_A*
Length = 463
Score = 29.9 bits (66), Expect = 1.0
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
++ + E+ K + + K KEK KE ++K+ ++ E+K ++ EK+ + KK
Sbjct: 35 QDLQSYSEKVCNTTYKAPIERPEDFLKDKEKAKEWERKEAERIEQKLERSEKEALESYKK 94
Query: 254 KEKKKKKKKKEKKKKKD 270
+ K + + D
Sbjct: 95 DSVEISKYSQTRNYFYD 111
Score = 29.5 bits (65), Expect = 1.4
Identities = 15/76 (19%), Positives = 39/76 (51%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+ E ++ K +EK KE ++++ + ++K ++ EK+ + KK+ + K + +
Sbjct: 50 KAPIERPEDFLKDKEKAKEWERKEAERIEQKLERSEKEALESYKKDSVEISKYSQTRNYF 109
Query: 252 KKKEKKKKKKKKEKKK 267
+ + ++KE K+
Sbjct: 110 YDYQIEANSREKEYKE 125
Score = 29.1 bits (64), Expect = 1.6
Identities = 12/76 (15%), Positives = 38/76 (50%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
+ + E+ K++EK +E ++++ + +++ ++ EK+ + KK + K +
Sbjct: 50 KAPIERPEDFLKDKEKAKEWERKEAERIEQKLERSEKEALESYKKDSVEISKYSQTRNYF 109
Query: 248 KKEEKKKEKKKKKKKK 263
+ + ++K+ K+
Sbjct: 110 YDYQIEANSREKEYKE 125
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 30.0 bits (67), Expect = 1.1
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 210 EKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
KK K ++ + K + + K K+K K + + K
Sbjct: 634 VKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKP 687
Score = 28.5 bits (63), Expect = 3.1
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 171 YGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
YKG E K+ K EE + + + + E K K+K K +
Sbjct: 624 RKYKGNFTEFVKK-----CPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNME 678
Query: 231 KKKKKKEKK 239
+ K
Sbjct: 679 FQYPGTSKP 687
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 29.1 bits (65), Expect = 1.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
EK EEK++ + K +K K+ ++K+ K K K
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDK 192
Score = 28.4 bits (63), Expect = 1.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
EK +EK++ + K KK K+ +KKE K K K +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
Score = 28.4 bits (63), Expect = 2.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
+K E+K++ + K KK K+ + +KK+ K K K
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDK 192
Score = 26.4 bits (58), Expect = 7.8
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+K +EK++ + K KK K+ ++K+ K K K +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 29.4 bits (67), Expect = 1.1
Identities = 14/81 (17%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+ R++ + + + + +E KK ++ + E+ + K+ K E+K+ +
Sbjct: 15 HRAIREKGVALDLEALLALDREVQELKKRL--QEVQTERNQVAKRVPKAPPEEKEALIAR 72
Query: 246 KKKKEEKKKEKKKKKKKKEKK 266
K E+ K ++ ++KE +
Sbjct: 73 GKALGEEAKRLEEALREKEAR 93
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
chaperon unknown function; 3.10A {Leptospira interrogans
serovar copenhaorganism_taxid}
Length = 325
Score = 29.5 bits (66), Expect = 1.2
Identities = 10/63 (15%), Positives = 27/63 (42%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K E K+ E + + ++K++ + K+ + + + +E +++ K K
Sbjct: 259 LKIEGKRPTPMENLRGGIQNILYRDKEEDTFHRWLKESRAEIPIQIFDEAYRKENKIPLK 318
Query: 263 KEK 265
+E
Sbjct: 319 EET 321
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 28.8 bits (64), Expect = 1.2
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
E K+ E + EK ++ ++++K++K + KK K+ K+ ++
Sbjct: 79 VAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
Score = 26.1 bits (57), Expect = 7.4
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
K+ + R E+ E+ ++++K++K ++KK K K+ ++
Sbjct: 79 VAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
Score = 26.1 bits (57), Expect = 7.5
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
KK E + ++ +K ++++K+KK + KK K+ +K +
Sbjct: 83 KKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
Score = 26.1 bits (57), Expect = 7.6
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
KK + + + EK +K +++ K+KK ++KK K+ KK ++ +
Sbjct: 83 KKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRNAD 135
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 29.4 bits (67), Expect = 1.2
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK---KKKKKKKEKKKKK 242
++R R KE ++ E K+ ++ K+ E + E+ K K K K++ K+ + +
Sbjct: 15 KERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQ 74
Query: 243 KEKKKKKEEKKKEKKKKKKKKEK 265
K+ KEE + +++ +K +E+
Sbjct: 75 NRVKELKEEIDRLEEELRKVEEE 97
Score = 27.9 bits (63), Expect = 4.6
Identities = 9/54 (16%), Positives = 31/54 (57%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+K+++E K + + ++ + K+ + K++ ++ + + + K+ KE+ + +E
Sbjct: 36 DKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEE 89
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES
stationary phase, ribosome hibernation,
ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB:
3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Length = 119
Score = 28.4 bits (64), Expect = 1.2
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEE 206
+ + + RR K EE EEE
Sbjct: 89 QHKGEARRAATSVKDANFVEEVEEEHHHH 117
>2r6a_C DNAG primase, helicase binding domain, replicative helicase;
replication, DNAB; 2.90A {Geobacillus
stearothermophilus} PDB: 2r6c_G 1z8s_A*
Length = 143
Score = 28.6 bits (64), Expect = 1.3
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K K K++EK + E++K+ + KE + KK
Sbjct: 99 LNRPKWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKMLS 141
Score = 26.3 bits (58), Expect = 8.6
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K K K++++ + E++K K+ E KK
Sbjct: 99 LNRPKWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKM 139
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 28.8 bits (64), Expect = 1.5
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K+++K+ +K+ KK K K+ +K KK +KKK K R R
Sbjct: 54 QPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMR 96
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 28.8 bits (64), Expect = 1.6
Identities = 6/50 (12%), Positives = 14/50 (28%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKK 268
++ + K K +K + K + + +K K
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTK 70
Score = 28.1 bits (62), Expect = 2.4
Identities = 6/59 (10%), Positives = 16/59 (27%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
++ + K K +K + K + + +K + + G
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGT 79
Score = 27.7 bits (61), Expect = 3.5
Identities = 8/53 (15%), Positives = 16/53 (30%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++ K K K +K E K + K + ++ K +
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRS 73
Score = 26.9 bits (59), Expect = 6.4
Identities = 8/69 (11%), Positives = 16/69 (23%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
++ K K K ++ + K K + + K +
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGTV 80
Query: 267 KKKDEGRRR 275
GR
Sbjct: 81 LILLAGRYM 89
Score = 26.9 bits (59), Expect = 6.6
Identities = 9/72 (12%), Positives = 19/72 (26%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ K K K ++ + K + K + +K K +
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGTV 80
Query: 263 KEKKKKKDEGRR 274
+ G+R
Sbjct: 81 LILLAGRYMGKR 92
>3u61_A DNA polymerase accessory protein 62; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_A* 3u60_A*
Length = 199
Score = 28.7 bits (64), Expect = 1.6
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKE-------KKKEKKKEKKKKEKKKEKKKKKKKKK 236
R KR K K E+ E + + K K K K+ K
Sbjct: 102 PRGKRYGKWAKLVEDSTEVLIIKLLAKRYQVNTNDAINYKSILTKNGKLPLVLKELKGLV 161
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKK 260
K+ K KE+K+ +K +
Sbjct: 162 TDDFLKEVTKNVKEQKQLKKLALE 185
>2l16_A SEC-independent protein translocase protein tatad; membrane
protein, protein transport; NMR {Bacillus subtilis}
Length = 78
Score = 27.2 bits (60), Expect = 1.6
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ K K E+E+K + K++K +
Sbjct: 38 LEFKSATKSLVSGDEKEEKSAELTAVKQDKNAGLEHHHHH 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.4 bits (67), Expect = 1.7
Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK-KKEKKKKKKEKKKK 248
RK+ + E E+E KKE+ +++ K E + + +E K + + ++E++ +K ++ +
Sbjct: 408 RKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQ 467
Query: 249 KE 250
Sbjct: 468 HR 469
Score = 27.1 bits (61), Expect = 6.8
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 221 KKEKKKEKKKKKKK-KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
KKEK + +++ K + E K +E K + E ++E++ +K +E + + DE RR
Sbjct: 421 KKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRR 475
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 28.9 bits (65), Expect = 1.7
Identities = 6/46 (13%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 192 RKKEEEEKEEEKK---EEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
++ ++ +K+ EEK + K ++ + ++ +E +++
Sbjct: 16 LDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREA 61
Score = 28.2 bits (63), Expect = 3.0
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKK 225
+ + +KR EE+ ++K +E + ++ +E + +
Sbjct: 16 LDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREA 61
Score = 28.2 bits (63), Expect = 3.6
Identities = 6/43 (13%), Positives = 20/43 (46%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKK 221
+ + +KR +K ++K +E + ++ +E +++
Sbjct: 19 DYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREA 61
Score = 27.4 bits (61), Expect = 5.9
Identities = 9/47 (19%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 199 KEEEKKE--EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+++ K+ KK++ +EK + K E + K+ +E +++
Sbjct: 16 LDQDYKDMLAKKRDGFEEKYPQDKIDEVFQ--WTTTKEYQELNFQRE 60
Score = 27.0 bits (60), Expect = 7.2
Identities = 5/46 (10%), Positives = 21/46 (45%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
++ K+ +K+ ++K + K + + ++ +E +++
Sbjct: 16 LDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREA 61
Score = 26.6 bits (59), Expect = 9.4
Identities = 6/46 (13%), Positives = 20/46 (43%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
+ + ++ + EEK + K ++ + K+ +E +++
Sbjct: 16 LDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREA 61
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 29.0 bits (64), Expect = 1.7
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
R + + EE+ + + + E+K + + + +K + E +
Sbjct: 4 RLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDES 47
Score = 29.0 bits (64), Expect = 2.1
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
R + K EE+ E K+ E++++ K + + +K++ + +
Sbjct: 4 RLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDES 47
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 28.0 bits (62), Expect = 1.8
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K E +K + EK ++ KE K+K K K K +KK + KK
Sbjct: 81 LKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKK 139
Score = 26.9 bits (59), Expect = 5.5
Identities = 15/68 (22%), Positives = 27/68 (39%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKK 254
++ + E +K K +K ++ K+ ++K K+ K K EKK +
Sbjct: 77 QQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQ 136
Query: 255 EKKKKKKK 262
KK K
Sbjct: 137 SKKSDHLK 144
Score = 26.1 bits (57), Expect = 9.6
Identities = 12/72 (16%), Positives = 28/72 (38%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+ ++ K + + ++ K +K ++ K+ K K K+ K K +K+
Sbjct: 75 DNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWAS 134
Query: 262 KKEKKKKKDEGR 273
+ KK +
Sbjct: 135 VQSKKSDHLKNF 146
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 28.8 bits (65), Expect = 1.8
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 84 SSGGPGAGGGGGGKSESTTAPSVLP 108
G G GGGG + +PS L
Sbjct: 146 GGSGGGGSGGGGSDLVMSQSPSSLA 170
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 29.0 bits (65), Expect = 1.8
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
+ + K + + + E K + +K +KKKK+K K E E ++ +
Sbjct: 346 EPDLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 29.0 bits (65), Expect = 2.0
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 200 EEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E + + + + + E K + +K +KKKKKK + + + +E + +
Sbjct: 346 EPDLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENEAGD 401
Score = 28.2 bits (63), Expect = 2.9
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
K E E ++ E K + ++ +K+KKKK K + + E+ +
Sbjct: 351 KSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 28.2 bits (63), Expect = 3.5
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K E + + E K + K +KKKKK+ K +
Sbjct: 351 KSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSG 391
Score = 27.4 bits (61), Expect = 4.9
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
E + + K + +K +KKK+KK K + E +E +
Sbjct: 354 MEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 27.4 bits (61), Expect = 5.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K + +K ++KKKKK K E + E+ + D
Sbjct: 362 KALLQSSASRKTQKKKKKKASKTAENATSGETLEENEAGD 401
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 29.1 bits (65), Expect = 1.9
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 8/88 (9%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKE--------KKKEKK 229
E +K +R E ++ E K + E + K +
Sbjct: 190 IEFHSLVNKKDYVQRFYAELHIDDPIVTEYFKNQNTASIAELNSLQDIYDYLEFKYANEI 249
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
+ K KK K EK K
Sbjct: 250 NEMFINHTGKTGKKHLKNSSYEKFKASP 277
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 28.8 bits (65), Expect = 1.9
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 84 SSGGPGAGGGGGGKSES----TTAPSVLP 108
SSGG G+GGGG G T PSV
Sbjct: 123 SSGGGGSGGGGSGGGGIQPGLTQPPSVSK 151
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 29.2 bits (65), Expect = 1.9
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K+E+ E + +K + K K KK
Sbjct: 11 SGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 28.4 bits (63), Expect = 3.0
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
K+E+ + K+ +K + K+ K KK
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 28.4 bits (63), Expect = 3.0
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
+ K++E + + ++ + K K KK +E
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINE 52
Score = 27.6 bits (61), Expect = 5.1
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+ K++E + + +K + K+ K KK
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 27.6 bits (61), Expect = 5.3
Identities = 10/59 (16%), Positives = 19/59 (32%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ K+++ + K +K E K K KK + + K G+
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTH 65
Score = 27.3 bits (60), Expect = 7.6
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 209 KEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K++E + K EK + + K ++
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 26.9 bits (59), Expect = 8.9
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 204 KEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ K+E+ E K +K + K K KK
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 26.9 bits (59), Expect = 9.0
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
K++E + K+ +K + + K KK
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 28.8 bits (64), Expect = 1.9
Identities = 3/33 (9%), Positives = 11/33 (33%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEE 206
G KE + ++ + +++ +
Sbjct: 15 GSGMKETAAAKFERQHMDSPDLGTDDDDKAMAD 47
Score = 28.8 bits (64), Expect = 2.2
Identities = 3/25 (12%), Positives = 6/25 (24%), Gaps = 1/25 (4%)
Query: 173 YKGGKKERRKQRRRKRKRKRKKEEE 197
+ R + K E +
Sbjct: 6 HHSSGLVPRGSGMK-ETAAAKFERQ 29
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 28.8 bits (64), Expect = 2.0
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
+ + + +K +K K ++E + +++K +K+KE K + K E K K
Sbjct: 281 DSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337
Score = 26.9 bits (59), Expect = 8.7
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K K ++E + ++++ +K+K+ K K K + K K
Sbjct: 292 KYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337
>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier,
S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo
sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A*
14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A*
3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A*
17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...
Length = 210
Score = 28.5 bits (64), Expect = 2.0
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 202 EKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKK 234
E K + K + K E + + K
Sbjct: 110 TNYEAGKDDYVKALPGQLKPFETLLSQNQGGKT 142
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 29.0 bits (65), Expect = 2.3
Identities = 13/105 (12%), Positives = 35/105 (33%), Gaps = 19/105 (18%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKK---KEKKK----------------KEKKKEKKK 230
R + EE K EK K+ + K + + K+
Sbjct: 47 RLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNY 106
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
K+ E ++ + + E+ + +++++ ++ ++ R
Sbjct: 107 CKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERI 151
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.5 bits (61), Expect = 2.4
Identities = 16/82 (19%), Positives = 39/82 (47%)
Query: 192 RKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
+++E +E+ K+ +K + + K+ +EK ++K + + + +++ EE
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE 69
Query: 252 KKKEKKKKKKKKEKKKKKDEGR 273
+ + K K + E K K+ R
Sbjct: 70 RCDQLIKNKIQLEAKVKEMNKR 91
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 28.7 bits (64), Expect = 2.4
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
+ EK + EK EK ++ + K+K+ +K
Sbjct: 27 TGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKRKEDLQKIT 70
>2yu1_A JMJC domain-containing histone demethylation PROT;
JMJC-domain-containing histone demethylases,
oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB:
2yu2_A
Length = 451
Score = 28.8 bits (63), Expect = 2.4
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
++ER + +R R R++ E++ + + E K+ E+K K +
Sbjct: 4 EEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFME 58
>2xlk_A CSY4 endoribonuclease; hydrolase-RNA complex, endoribonuclease,
crispr; 1.80A {Pseudomonas aeruginosa} PDB: 2xlj_A
2xli_A
Length = 191
Score = 27.9 bits (62), Expect = 2.5
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 182 KQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKK 213
+R R+R +R EE+ ++ +
Sbjct: 113 PERLRRRLMRRHDLSEEEARKRIPDTVARTLD 144
Score = 27.2 bits (60), Expect = 4.5
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKK 209
ER ++R +R ++E ++ +
Sbjct: 111 SNPERLRRRLMRRHDLSEEEARKRIPDTVARTLD 144
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 28.7 bits (64), Expect = 2.5
Identities = 14/77 (18%), Positives = 28/77 (36%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
++ +++ KEE E+ K + K+E E + + K +
Sbjct: 954 FTFAQREQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQY 1013
Query: 238 KKKKKKEKKKKKEEKKK 254
K KK+ +K +K
Sbjct: 1014 KTKKQAVFQKIVSFIEK 1030
Score = 26.8 bits (59), Expect = 9.2
Identities = 10/66 (15%), Positives = 27/66 (40%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++E++++ K + E+ K + K++ + + + K + K KK
Sbjct: 958 QREQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKK 1017
Query: 237 EKKKKK 242
+ +K
Sbjct: 1018 QAVFQK 1023
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 28.3 bits (63), Expect = 2.6
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 174 KGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEK 228
+G +R + ++ EE E++ EE E+ E++ +++ E++ E
Sbjct: 185 RGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEA 239
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 28.4 bits (63), Expect = 2.7
Identities = 7/42 (16%), Positives = 24/42 (57%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++ + + + + ++ ++ +EEK+ E +K+K+++E
Sbjct: 481 IRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 522
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 28.6 bits (63), Expect = 2.7
Identities = 7/68 (10%), Positives = 25/68 (36%)
Query: 186 RKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
+++ + K+ + K E + K+K K++ ++ +K + ++++
Sbjct: 733 KEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDGAPGFSSIS 792
Query: 246 KKKKEEKK 253
Sbjct: 793 AHHHHHHH 800
Score = 28.2 bits (62), Expect = 4.1
Identities = 14/124 (11%), Positives = 37/124 (29%), Gaps = 26/124 (20%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKK-----------------KEKK 212
+ GY+ + K+ + K + + + + + KEK
Sbjct: 677 QRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKV 736
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKK---------EKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+E K++ K ++ K+K ++ K E +++++
Sbjct: 737 EELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDGAPGFSSISAHHH 796
Query: 264 EKKK 267
Sbjct: 797 HHHH 800
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 28.0 bits (62), Expect = 2.7
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 174 KGGKKERRKQRRRKRKRKRKK---------EEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
+ K RR R R +E + K+ K KK K K+ K
Sbjct: 123 RAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 28.0 bits (63), Expect = 2.9
Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 29/125 (23%)
Query: 176 GKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEK----------- 224
+ R RR + + K E K + K ++
Sbjct: 78 DGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIY 137
Query: 225 ----------KKEKKKKK--------KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
+ ++ ++K K + KK E KK + KE + + E
Sbjct: 138 IRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDILARTEGG 197
Query: 267 KKKDE 271
Sbjct: 198 HHHHH 202
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 28.4 bits (63), Expect = 2.9
Identities = 2/33 (6%), Positives = 12/33 (36%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
++ ++ + + + K ++ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.0 bits (62), Expect = 3.3
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
++ ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.0 bits (62), Expect = 3.5
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ ++ + ++ + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.0 bits (62), Expect = 3.7
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
+ ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
Score = 28.0 bits (62), Expect = 4.1
Identities = 3/33 (9%), Positives = 11/33 (33%)
Query: 203 KKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
+ ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 27.6 bits (61), Expect = 4.7
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
++ ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 27.2 bits (60), Expect = 5.9
Identities = 3/33 (9%), Positives = 11/33 (33%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ ++ + ++ + K K+ K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 26.8 bits (59), Expect = 9.5
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ ++ + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 26.8 bits (59), Expect = 9.7
Identities = 3/31 (9%), Positives = 12/31 (38%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++ ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVS 34
>1f3u_B Transcription initiation factor IIF, alpha subunit; general
transcription initiation and elongation factor, RNA
polymerase II; 1.70A {Homo sapiens} SCOP: b.65.1.1
Length = 171
Score = 27.8 bits (61), Expect = 2.9
Identities = 11/69 (15%), Positives = 28/69 (40%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
+ E++ K+ ++E+ E + K +E+ ++KK K+ + E +
Sbjct: 40 TWNQARLERDLSNKKIYQEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLL 99
Query: 251 EKKKEKKKK 259
+ +K
Sbjct: 100 RVNGKSGRK 108
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 27.6 bits (61), Expect = 3.1
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 174 KGGKKERRKQRRRKRKRKRKK---------EEEEKEEEKKEEKKKEKKKEKKKEKKKKEK 224
+ K+ RR R R K + E+E+ K EKK + +++ + +K
Sbjct: 121 QAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAKAAEKKVVRLTSRQRGRIAAQK 180
Query: 225 K 225
+
Sbjct: 181 R 181
Score = 26.5 bits (58), Expect = 8.3
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKKEKKK 247
EK++ K +KK + ++ + +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 26.5 bits (58), Expect = 8.7
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
EK++ K +KK + +++ +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 28.2 bits (63), Expect = 3.1
Identities = 5/44 (11%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 192 RKKEEEEKEEEKK--EEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
+ E +E K+ EE ++ ++ + + +++
Sbjct: 15 EQDEYQELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRRE 58
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA
binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Length = 1308
Score = 28.3 bits (62), Expect = 3.1
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K K +K+K K +E K
Sbjct: 1219 NKSSDAPKCSEKEKAAVSTTMAKVLRETK 1247
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 28.4 bits (62), Expect = 3.1
Identities = 13/84 (15%), Positives = 32/84 (38%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKK 239
R + R R K E+++ KEK + + + ++K + +
Sbjct: 499 RGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 558
Query: 240 KKKKEKKKKKEEKKKEKKKKKKKK 263
K ++ ++K + ++ KK +
Sbjct: 559 KFIRDSQEKPKPVPDKENKKLLCR 582
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 28.3 bits (62), Expect = 3.2
Identities = 6/48 (12%), Positives = 16/48 (33%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
EEE ++E + + + + + + E+ E +
Sbjct: 454 EEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGAGQ 501
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 27.9 bits (61), Expect = 3.4
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
KK + + ++ + + K ++ K+
Sbjct: 238 KKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 27.5 bits (60), Expect = 4.8
Identities = 4/31 (12%), Positives = 14/31 (45%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKK 263
+ KK+ + + + + + K ++ K+
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 27.1 bits (59), Expect = 5.9
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
+ KK+ + + + + + K + K+
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 26.7 bits (58), Expect = 8.6
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKE 244
KK+ + + ++ + + K ++ K+ +
Sbjct: 238 KKDDAQGRTLRDVGELTRSSTKTRRSIKRPELG 270
Score = 26.7 bits (58), Expect = 8.7
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRR 274
+ KK + + + + + K + K+ + G R
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELGLR 272
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 28.2 bits (62), Expect = 3.4
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
E K K E K +K+ + + KKK +G
Sbjct: 1 EAKLAKYEADLAKYKKEFAAYTAALAEAESKKKQDG 36
Score = 27.5 bits (60), Expect = 5.5
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 218 EKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E K + + + K KK+ E + KK++
Sbjct: 1 EAKLAKYEADLAKYKKEFAAYTAALAEAESKKKQDG 36
Score = 27.1 bits (59), Expect = 6.2
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
E K K + K +K+ + E KK++
Sbjct: 1 EAKLAKYEADLAKYKKEFAAYTAALAEAESKKKQDG 36
Score = 26.7 bits (58), Expect = 10.0
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 212 KKEKKKEKKKKEK-KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
+ + K + K KKE E + KKK+ E + +
Sbjct: 1 EAKLAKYEADLAKYKKEFAAYTAALAEAESKKKQDGYLSEPRSQS 45
>3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation,
open conformation; 2.70A {Eubacterium barkeri}
Length = 391
Score = 28.2 bits (62), Expect = 3.5
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 133 VARSCKDGSLPSCGCSRTARP 153
V KDG + RTAR
Sbjct: 346 VVSIVKDGKVEKAALIRTARR 366
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.5 bits (62), Expect = 3.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEK 245
K+KK +K+ K+ +KK+K + +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 27.1 bits (61), Expect = 5.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEK 256
K+KK +KE K+ +K++K K E
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 26.7 bits (60), Expect = 6.3
Identities = 4/27 (14%), Positives = 15/27 (55%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEK 203
K+++ ++ ++ ++K+K + E
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 26.3 bits (59), Expect = 7.6
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKK 254
K+KK +K+ ++ +KK++ K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 26.3 bits (59), Expect = 8.3
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEE 251
K++K +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 26.3 bits (59), Expect = 9.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K+KK EK+ K+ +KK++ K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 27.7 bits (62), Expect = 3.6
Identities = 8/52 (15%), Positives = 22/52 (42%)
Query: 215 KKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
EK K+ + E+ + K+ KK+ ++ + + + + + +K
Sbjct: 108 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 159
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 28.0 bits (62), Expect = 3.8
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ +K+ + + ++ ++ E K K + K K+ + K K+E+K
Sbjct: 517 ETTKKKLEVLQSQKGQESEYGNITYPPAMKNAHAKASRTSSKHKEDVYENLHTKNKREEK 576
Query: 247 KKKEEKK-KEKKKKKKKKE 264
KK+ KEK K K++
Sbjct: 577 VKKQRSADKEKSKGSLKRK 595
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 27.7 bits (61), Expect = 3.9
Identities = 8/56 (14%), Positives = 21/56 (37%)
Query: 177 KKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK 232
K +++K RR ++ + E E + E K++ + + + +
Sbjct: 200 KYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEAEVEAKEEAEAEAEAEAV 255
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein
prenylation, metal-binding, prenyltransferase, zinc,
phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A*
3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A*
3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A*
Length = 331
Score = 27.9 bits (61), Expect = 4.1
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 188 RKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
R + + EE+ + + + E+K + + + +K + E +
Sbjct: 5 RLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDES 48
Score = 27.9 bits (61), Expect = 4.2
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKK 233
R + K EE+ E K+ E++++ K + + +K++ + +
Sbjct: 5 RLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDES 48
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 27.6 bits (62), Expect = 4.2
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 84 SSGGPGAGGG----GGGKSESTTAPSVLP 108
S+GG G+GGG GG + T P+ L
Sbjct: 116 SAGGGGSGGGGSGGGGSELVMTQTPASLA 144
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA
complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP:
c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A*
2pyj_A* 2pyl_A* 2pzs_A*
Length = 575
Score = 27.9 bits (61), Expect = 4.2
Identities = 16/76 (21%), Positives = 22/76 (28%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
E + K +K + KE K + K K K KKE
Sbjct: 484 AHESTFKRAKYLRQKTYIQDIYMKEVDGKLVEGSPDDYTDIKFSVKCAGMTDKIKKEVTF 543
Query: 254 KEKKKKKKKKEKKKKK 269
+ K +K K K
Sbjct: 544 ENFKVGFSRKMKPKPV 559
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 27.3 bits (60), Expect = 4.4
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 180 RRKQRRRKRKRKRKKEEEEKEEEKKE 205
R Q K K ++ ++ E K +
Sbjct: 81 ERTQYWEFEKDKDREHDKLVELCKIQ 106
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 27.3 bits (60), Expect = 4.4
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K K K +KK + + ++ K K+ +++++++ + KKE+ K KE++ KK
Sbjct: 143 HKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK 196
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 27.9 bits (63), Expect = 4.4
Identities = 6/57 (10%), Positives = 19/57 (33%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+ +K E ++ + + ++++ + + K+ KKK
Sbjct: 724 RMSDTPGEKVEGQRGGRPTGSGQPRQERGAPRGQSAPPANNAMAALFANAKQLKKKH 780
Score = 27.2 bits (61), Expect = 6.7
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 189 KRKR-----KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKK-----KKKKEK 238
R R + + E+ + + + + ++++ + + K
Sbjct: 715 PRNRVGLSMRMSDTPGEKVEGQRGGRPTGSGQPRQERGAPRGQSAPPANNAMAALFANAK 774
Query: 239 KKKKKE 244
+ KKK
Sbjct: 775 QLKKKH 780
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell
adhesion; NMR {Homo sapiens} PDB: 2p03_A
Length = 323
Score = 27.8 bits (61), Expect = 4.6
Identities = 17/95 (17%), Positives = 36/95 (37%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
E R + ++E E ++E K E K EK +K+ + +K + +
Sbjct: 220 EPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGD 279
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
++ ++K + K+ +K + GR
Sbjct: 280 GERVSRSREKHALLEGRTKELGYTVKKHLQDLSGR 314
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG,
structure initiative, PSI, joint center for structural
GENO translation; 1.70A {Thermotoga maritima} SCOP:
d.58.14.1
Length = 140
Score = 27.0 bits (60), Expect = 4.6
Identities = 4/31 (12%), Positives = 17/31 (54%)
Query: 221 KKEKKKEKKKKKKKKKEKKKKKKEKKKKKEE 251
++ ++K++K +++K + + + E+
Sbjct: 110 RRFDLEKKERKAQREKAAAEATESSEGGSED 140
Score = 26.6 bits (59), Expect = 5.3
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
++ +KK++K +++K E + E ++
Sbjct: 110 RRFDLEKKERKAQREKAAAEATESSEGGSED 140
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 26.6 bits (58), Expect = 4.8
Identities = 15/78 (19%), Positives = 37/78 (47%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKK 253
+E + +E+ + K+ ++ K + + K+ +K+E +K+K E +++ E+
Sbjct: 19 RELNQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLA 78
Query: 254 KEKKKKKKKKEKKKKKDE 271
E K + + + K E
Sbjct: 79 SENASMKLELDALRSKYE 96
Score = 25.8 bits (56), Expect = 8.1
Identities = 14/68 (20%), Positives = 33/68 (48%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
KE Q +++R+ + + K+ +K+E +K+K + +++ EK + K + +
Sbjct: 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELD 89
Query: 238 KKKKKKEK 245
+ K E
Sbjct: 90 ALRSKYEA 97
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 27.3 bits (60), Expect = 4.9
Identities = 20/87 (22%), Positives = 42/87 (48%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
K+K + K ++E ++ +E + +KK + + K+ +++ +KK K +++ K E
Sbjct: 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL 64
Query: 247 KKKEEKKKEKKKKKKKKEKKKKKDEGR 273
K +EK + +KK E R
Sbjct: 65 KDAQEKLELAEKKATDAEADVASLNRR 91
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 26.9 bits (59), Expect = 4.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
KK E K + K +K +K+ K++K KK KK K + KKK
Sbjct: 89 KKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
Score = 26.5 bits (58), Expect = 6.9
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
+ + KK E K + K +K +K+ K++K + KK + KK + ++K
Sbjct: 83 DNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
Score = 26.1 bits (57), Expect = 9.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 211 KKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
KK E K + + +K +K+ KE+K + K+ + K+ K + KKK
Sbjct: 89 KKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I;
beta-alpha-beta motif, RUVC resolvase family, hydrolase;
2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1
c.55.3.7
Length = 258
Score = 27.5 bits (60), Expect = 5.0
Identities = 12/60 (20%), Positives = 21/60 (35%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
K K KKK + + K+ + +K E ++ K + KKD+
Sbjct: 168 PKSTYSYWASVLNTKASFSKKKSRVQMVKELIDGQKILFENEEALYKWNNGSRVEFKKDD 227
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 27.5 bits (60), Expect = 5.1
Identities = 13/79 (16%), Positives = 38/79 (48%)
Query: 187 KRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ + K + +E+ K ++ + + +KE + K+++ + + K +++ E
Sbjct: 159 AERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVG 218
Query: 247 KKKEEKKKEKKKKKKKKEK 265
+K ++ KK++K E+
Sbjct: 219 RKDLLRRTIKKQRKYGAEE 237
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo
sapiens} PDB: 3q7l_A 3q7g_A 3qmk_A*
Length = 219
Score = 27.1 bits (59), Expect = 5.2
Identities = 7/58 (12%), Positives = 27/58 (46%)
Query: 178 KERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
K ++RR ++ + +E + + K K +++ + + + +E+ ++++
Sbjct: 34 KMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQR 91
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G
3o58_F 3o5h_F 3u5e_E 3u5i_E
Length = 176
Score = 26.9 bits (59), Expect = 5.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 225 KKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDE 271
KEK KK+KK+ +++ K+ K E+ +++K K + KK
Sbjct: 107 AKEKLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTP 153
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 26.5 bits (58), Expect = 5.3
Identities = 6/39 (15%), Positives = 20/39 (51%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKK 269
K+ +++ ++ ++EEK++ K K+ ++ +
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 27.3 bits (60), Expect = 5.6
Identities = 14/75 (18%), Positives = 28/75 (37%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKE 255
E E ++ K+ + KE +K+ ++ K K + E E +
Sbjct: 135 GEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASEMTRIA 194
Query: 256 KKKKKKKKEKKKKKD 270
+ +K K KK++
Sbjct: 195 RLIEKNKMSDGKKEE 209
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B
3izc_C 3izs_C 1s1i_C 3jyw_C
Length = 387
Score = 27.5 bits (60), Expect = 5.6
Identities = 12/72 (16%), Positives = 25/72 (34%)
Query: 198 EKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
E ++ K + + + KKK K K + +++ KK +
Sbjct: 104 TVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVH 163
Query: 258 KKKKKKEKKKKK 269
+ +K +KK
Sbjct: 164 TQIRKTPLAQKK 175
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 26.8 bits (59), Expect = 5.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKK 261
K KK + K ++ K K + K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 26.8 bits (59), Expect = 5.7
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKK 249
K +K K ++ K + K K+K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSK 34
Score = 26.8 bits (59), Expect = 6.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
K KK K ++ K + K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 26.4 bits (58), Expect = 7.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 231 KKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
K KK K ++ K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 27.5 bits (61), Expect = 5.7
Identities = 7/42 (16%), Positives = 24/42 (57%)
Query: 223 EKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++ + + + + ++ ++ +EEK+ E +K+K+++E
Sbjct: 312 IRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 353
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 26.1 bits (57), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 213 KEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEK 245
K+ K + K K+KKKK K K+KEK
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.1 bits (57), Expect = 6.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KK + K K K+KKKK K K++EK
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.1 bits (57), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
KK K K K ++KK+K K K+KEK
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 25.7 bits (56), Expect = 8.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 219 KKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
KK K K K ++KKKK K K+KE
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKE 35
Score = 25.7 bits (56), Expect = 9.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
KK K K K K+KKKK K K+K+
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKE 35
Score = 25.7 bits (56), Expect = 9.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
KK+K K K K+K+KK K ++K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 25.7 bits (56), Expect = 9.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
KK+K + K K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 25.4 bits (55), Expect = 10.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 230 KKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
KK K K K K+++KK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 26.5 bits (59), Expect = 6.0
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 245 KKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
K K ++ + +K +K +G
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPKG 30
Score = 26.5 bits (59), Expect = 6.5
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 217 KEKKKKEKKKEKKKKKKKKKEKKKKKK 243
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.1 bits (58), Expect = 8.8
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEK 238
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.1 bits (58), Expect = 9.3
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K K ++ + +K +K +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 27.2 bits (61), Expect = 6.0
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 11/38 (28%)
Query: 83 CSSGGPGAGGG----GGG-----KSESTTAPSV--LPP 109
C G G G G + TT PSV L P
Sbjct: 314 CVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAP 351
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn
finger, ADP-ribosylation, D damage, DNA repair,
DNA-binding, glycosyltransferase; 1.70A {Homo sapiens}
PDB: 2jvn_A
Length = 160
Score = 26.9 bits (59), Expect = 6.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 227 EKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
++ KKK KKEK K K +K K + K + K+ D
Sbjct: 3 DEVAKKKSKKEKDKDSKLEKALKAQNDLIWNIKDELKKVCSTND 46
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 27.3 bits (60), Expect = 6.1
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 7/100 (7%)
Query: 170 EYGYKGGKKERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKK 229
G+ KE + ++ + K EE ++ ++ + E+
Sbjct: 634 NLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY 693
Query: 230 KK-------KKKKKEKKKKKKEKKKKKEEKKKEKKKKKKK 262
+ K+ +K K+K++K+ E + K K
Sbjct: 694 EYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKD 733
Score = 26.9 bits (59), Expect = 8.0
Identities = 11/96 (11%), Positives = 35/96 (36%), Gaps = 2/96 (2%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKE--EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
++RK +R + ++ + + K EK+ + + ++ + + K+ K
Sbjct: 586 QKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGK 645
Query: 237 EKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEG 272
++ ++ K ++ +E + E
Sbjct: 646 PYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTEN 681
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 100
Score = 25.9 bits (58), Expect = 6.2
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 216 KKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
+K ++EKK+ ++K + K++ +K K E K
Sbjct: 3 RKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVTSLSDKWEIHGK 46
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 27.5 bits (62), Expect = 6.3
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+ E+ +E + + K+K +E + K K
Sbjct: 262 KNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDK 312
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 27.3 bits (60), Expect = 6.4
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 238 KKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
K EK+ K ++ ++++ K +
Sbjct: 304 GVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 27.2 bits (60), Expect = 6.4
Identities = 9/66 (13%), Positives = 21/66 (31%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
K K+E +++ K K + E + + + + + K
Sbjct: 162 APSEKPVTWTKQEIFFGPCLLKEQSAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAKI 221
Query: 249 KEEKKK 254
+E + K
Sbjct: 222 RELEHK 227
>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence,
duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo
alto}
Length = 487
Score = 27.4 bits (61), Expect = 6.5
Identities = 17/67 (25%), Positives = 24/67 (35%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKK 260
+K EE K+ K + +K K+ K K+ + KK K K
Sbjct: 385 VKKLEEFYKQNLKYSMEIQKWKKTKNNYYDKEFYENLDKKSYSTIDKFLNLLNNGKHCHD 444
Query: 261 KKKEKKK 267
K EK K
Sbjct: 445 NKDEKNK 451
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 27.3 bits (60), Expect = 6.6
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 226 KEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
KE K + + + K +K+ E K+ + K ++ K +D +RR
Sbjct: 28 KEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRR 77
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 27.2 bits (61), Expect = 6.8
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGRRR 275
+ + K + + E K K+ G R
Sbjct: 57 TEHLMAVGMARLGGIGIIHKNMDMESQVNEVLKVKNSGGLR 97
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 26.9 bits (59), Expect = 6.8
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 224 KKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
KK++KK K KK K + +++ ++++
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAGSP 146
Score = 26.5 bits (58), Expect = 8.5
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
KK++KK + KK K + ++K E+
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAGSP 146
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 27.1 bits (61), Expect = 6.9
Identities = 3/32 (9%), Positives = 12/32 (37%)
Query: 233 KKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
++K+ + K+ E ++ + +
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
Score = 26.8 bits (60), Expect = 9.5
Identities = 2/32 (6%), Positives = 12/32 (37%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKK 259
++K+ + K+ + ++ + +
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_F
Length = 213
Score = 26.7 bits (58), Expect = 7.0
Identities = 0/50 (0%), Positives = 0/50 (0%)
Query: 208 KKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKK 257
Sbjct: 2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG 51
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 27.1 bits (59), Expect = 7.0
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 10/87 (11%)
Query: 194 KEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK----------EKKKKKK 243
+ +EE K+ +K K K+ KK ++K+ K +K
Sbjct: 439 ADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDV 498
Query: 244 EKKKKKEEKKKEKKKKKKKKEKKKKKD 270
K + +
Sbjct: 499 PDINPVVAKIMGNLLVHRVIKNNGDGT 525
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 26.6 bits (58), Expect = 7.2
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
ERRK + K E+ E E E ++ +E K K+K +K E K+ ++
Sbjct: 57 ERRKYQ-EAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLA 115
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKK 266
++ ++K K ++ K K+ K++ +
Sbjct: 116 AMLERLQEKDKHAEEVRKNKELKEEASR 143
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 26.6 bits (59), Expect = 7.2
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKK 236
EE EE E +K E+ K + + E K + + +
Sbjct: 38 VPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLSEMEHR 81
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 7.5
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 3/20 (15%)
Query: 6 SSQPISEPSSPP---INAGV 22
+S + S P I A +
Sbjct: 27 ASLKLYADDSAPALAIKATM 46
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized
SCFV), SCFV, monovalent antibo antibody engineering,
immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Length = 276
Score = 26.9 bits (60), Expect = 7.5
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 84 SSGGPGAGGGGGGKSES 100
GG G+ G G S
Sbjct: 118 KGGGGGSIEGRSGGGGS 134
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX,
RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Length = 144
Score = 26.5 bits (58), Expect = 7.7
Identities = 7/66 (10%), Positives = 16/66 (24%)
Query: 197 EEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEK 256
++ + K KK ++ K+ +K E K
Sbjct: 3 HHHHHHSSGIEEGRMTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTL 62
Query: 257 KKKKKK 262
+ +
Sbjct: 63 NRGISE 68
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD,
WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Length = 195
Score = 26.7 bits (58), Expect = 7.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 201 EEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
E + K KEK K K +K KKKE K + KE + ++
Sbjct: 148 EGQMYPGKGGGSKEKNKTKPEKAKKKEGDPKPRASKEDNRAGSRRE 193
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 25.7 bits (56), Expect = 7.9
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 220 KKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEK 252
K++ K K KK KKK KK +++
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 27.1 bits (59), Expect = 8.1
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 185 RRKRKRKRKKEEEEKEEEKKEEKKK------EKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
R+ ++ +K +E++ ++K K K+ K + + + +
Sbjct: 449 RKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLATFLASGNKELVSKYQNEISEGLFKL 508
Query: 239 KKKKKEKKKKKEEKKKEK 256
KK + +E +K +
Sbjct: 509 ISKKLDLINIEEYRKVYR 526
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein
complex, enzyme- inhibitor complex, disease mutation,
glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Length = 257
Score = 26.7 bits (60), Expect = 8.2
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 98 SESTTAPSVLP 108
S ST PSV P
Sbjct: 128 SASTKGPSVFP 138
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 25.8 bits (56), Expect = 8.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 207 KKKEKKKEKKKEKKKKEKKKEKKKKKKKKKE 237
K K KK K +K K KKKK+K+KE
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 25.8 bits (56), Expect = 9.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 234 KKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
K K KK K +K K +KKKK+K+KE
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune
system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Length = 263
Score = 26.8 bits (60), Expect = 8.3
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 98 SESTTAPSVLP 108
+ ST PSV P
Sbjct: 122 AASTKGPSVFP 132
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2,
protei structure initiative; 2.50A {Staphylococcus
aureus subsp}
Length = 244
Score = 26.5 bits (59), Expect = 8.5
Identities = 6/46 (13%), Positives = 10/46 (21%)
Query: 228 KKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKDEGR 273
E + + E + K K +K R
Sbjct: 7 HSSGVDLGTENLYFQSNAYLELNEIESIIKDINTKAQKMHSGIHKR 52
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 26.5 bits (59), Expect = 8.6
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 196 EEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKK 235
EE E E+ + +E + +++ + +E+ K K K
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDK 41
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 26.3 bits (59), Expect = 8.9
Identities = 2/22 (9%), Positives = 7/22 (31%)
Query: 241 KKKEKKKKKEEKKKEKKKKKKK 262
+ K + ++ K +
Sbjct: 165 RPKLNELIRDYKATHSLEHHHH 186
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 26.9 bits (59), Expect = 9.0
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 190 RKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKK 230
++R+ + +E+ +K K EK++ K K K++KK
Sbjct: 392 QERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432
>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator
americanus}
Length = 206
Score = 26.5 bits (59), Expect = 9.1
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 212 KKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKK 246
+E E+ KKE + K K KK
Sbjct: 112 MREGDVEQLKKEVLLPARDKFFGFITKFLKKSPSG 146
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A
{Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B
2qna_B
Length = 365
Score = 26.7 bits (58), Expect = 9.2
Identities = 10/71 (14%), Positives = 29/71 (40%)
Query: 184 RRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKK 243
R + K K E+ + + E +K K+ + ++ + + +++ +K ++
Sbjct: 32 RLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEENKKDDEEM 91
Query: 244 EKKKKKEEKKK 254
+ K+ K
Sbjct: 92 DIDTVKKLPKH 102
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 26.2 bits (57), Expect = 9.3
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKK 240
+ E + +E+ +K K K E +++KKKE ++K +K++++
Sbjct: 108 NTAKFEDDYFGREKARKNHKNLFKAELTEEQKKKETERKNARKQDQQA 155
>2wt7_B Transcription factor MAFB; transcription, transcription regulation,
nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 2wty_A* 1k1v_A
Length = 90
Score = 25.3 bits (55), Expect = 9.3
Identities = 11/67 (16%), Positives = 36/67 (53%)
Query: 205 EEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKE 264
+++ K++++ K + + + K+ ++K + +K + ++ E+ K+E + ++++
Sbjct: 20 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERD 79
Query: 265 KKKKKDE 271
K K E
Sbjct: 80 AYKVKSE 86
>3c64_A Pfemp1 variant 2 of strain MC; alpha-helical, three-helix bundle,
CD36-binding protein, cell adhesion, CD36-binding
protein,cell adhesion; HET: PG4; 2.40A {Plasmodium
falciparum}
Length = 179
Score = 26.2 bits (57), Expect = 9.4
Identities = 10/75 (13%), Positives = 21/75 (28%)
Query: 199 KEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKK 258
++ + K + ++ K +K K + E+K+ K
Sbjct: 100 QDTYGDANEIKRIEALLEQAGVGGIDFAALAGLYTKGFVAEKDTTIDKLLQHEQKEADKC 159
Query: 259 KKKKKEKKKKKDEGR 273
K + E R
Sbjct: 160 LKTHTDDTCPPQEDR 174
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 26.2 bits (57), Expect = 9.4
Identities = 14/92 (15%), Positives = 36/92 (39%)
Query: 179 ERRKQRRRKRKRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEK 238
+ RR + R+ + + + K K+ K K K E + K ++
Sbjct: 92 QVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQR 151
Query: 239 KKKKKEKKKKKEEKKKEKKKKKKKKEKKKKKD 270
+K E+ + + K + + ++ ++ +K+
Sbjct: 152 EKALNEEAEARRLKNRAARDRRAQRVAEKRDA 183
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition,
immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo
sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H*
2qsc_H*
Length = 248
Score = 26.3 bits (59), Expect = 9.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 98 SESTTAPSVLP 108
S ST PSV P
Sbjct: 136 SASTKGPSVFP 146
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 26.6 bits (59), Expect = 9.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 193 KKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKK 231
K E E+ +E+K E++KE K+ + K KE ++ +K
Sbjct: 526 KDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEK 564
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related
protein; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_B
Length = 256
Score = 26.3 bits (59), Expect = 9.7
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 98 SESTTAPSVLP 108
S ST PSV P
Sbjct: 149 SASTKGPSVFP 159
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 25.8 bits (57), Expect = 9.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 235 KKEKKKKKKEKKKKKEEKKKEKKKKKKKKEKKK 267
+ +K + KKK+E+ K K+K + K
Sbjct: 83 NANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK 115
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle
acetylcholine receptor...; immunoglobulin, immune
system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2
PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Length = 215
Score = 26.3 bits (59), Expect = 9.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 98 SESTTAPSVLP 108
S TTAPSV P
Sbjct: 117 SAQTTAPSVYP 127
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP,
IST1, coiled coil, cytoplasm, lipoprotein, membrane,
myristate, phosphoprotein; 4.00A {Homo sapiens}
Length = 218
Score = 26.3 bits (57), Expect = 9.8
Identities = 12/71 (16%), Positives = 32/71 (45%)
Query: 189 KRKRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKK 248
+ K +E E + +K+ + +++ ++E++K K+ K K+ +K K
Sbjct: 2 HMQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAK 61
Query: 249 KEEKKKEKKKK 259
+ + ++ K
Sbjct: 62 EMIRSRKAVSK 72
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A
{Mus musculus}
Length = 243
Score = 26.6 bits (58), Expect = 9.8
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 206 EKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKEEKKKEKKKKKKKKEK 265
E + + K E +++ K + K+KKE + + K +
Sbjct: 144 EFQLPQTKTNSAENNTASSSMAYPNLVAMASQRQAKIERYKQKKEVE--HRLSALKSAVE 201
Query: 266 KKKKDEGRRR 275
+ D+ R R
Sbjct: 202 SGQADDERVR 211
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 26.7 bits (60), Expect = 10.0
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 191 KRKKEEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKKKKEKKKKKE 250
K E ++ + + K K+ K +KK+++ + K+K +
Sbjct: 242 KEPFAFEPEDTDAIKAKMKDLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALGLSDENP 301
Query: 251 EKKKEKKKKK--KKKEKK 266
K K+ E
Sbjct: 302 TGYDPLKLGAIFKELEAD 319
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Length = 505
Score = 26.7 bits (59), Expect = 10.0
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 195 EEEEKEEEKKEEKKKEKKKEKKKEKKKKEKKKEKKKKKKKKKEKKKK 241
E EE +++ K K + K K + + E K+
Sbjct: 373 AEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKR 419
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.126 0.359
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,133,814
Number of extensions: 279010
Number of successful extensions: 15095
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8869
Number of HSP's successfully gapped: 2967
Length of query: 275
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 183
Effective length of database: 4,133,061
Effective search space: 756350163
Effective search space used: 756350163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.4 bits)