BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17097
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QBX|A Chain A, Ephb2SNEW ANTAGONISTIC PEPTIDE COMPLEX
pdb|2QBX|B Chain B, Ephb2SNEW ANTAGONISTIC PEPTIDE COMPLEX
Length = 208
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 22/149 (14%)
Query: 4 ESFTNFEKGINW-RSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGN 62
E + +++ +N R+Y VC+V + NNWL T FI R A+RI++E+KF++RDC+ P
Sbjct: 56 EEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSV 115
Query: 63 ALSCKETFSLLYYE--FDAATREPPPW------------EPESYKL------IVNINTEV 102
SCKETF+L YYE FD+AT+ P W ES+ ++ INTEV
Sbjct: 116 PGSCKETFNLYYYEADFDSATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEV 175
Query: 103 KSI-PVTKKGVYFAFRDQGACISLLAIKV 130
+S PV++ G Y AF+D G C+SL+A++V
Sbjct: 176 RSFGPVSRSGFYLAFQDYGGCMSLIAVRV 204
>pdb|1KGY|A Chain A, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|B Chain B, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|C Chain C, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|D Chain D, Crystal Structure Of The Ephb2-Ephrinb2 Complex
Length = 181
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 90/149 (60%), Gaps = 22/149 (14%)
Query: 4 ESFTNFEKGINW-RSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGN 62
E + +++ +N R+Y VC+V + NNWL T FI R A+RI++E+KF++RDC+ P
Sbjct: 26 EEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSV 85
Query: 63 ALSCKETFSLLYYE--FDAATREPPPW------------EPESYKL------IVNINTEV 102
SCKETF+L YYE FD AT+ P W ES+ ++ INTEV
Sbjct: 86 PGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEV 145
Query: 103 KSI-PVTKKGVYFAFRDQGACISLLAIKV 130
+S PV++ G Y AF+D G C+SL+A++V
Sbjct: 146 RSFGPVSRNGFYLAFQDYGGCMSLIAVRV 174
>pdb|1NUK|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Ephb2 Receptor Tyrosine Kinase
Length = 183
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 90/149 (60%), Gaps = 22/149 (14%)
Query: 4 ESFTNFEKGINW-RSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGN 62
E + +++ +N R+Y VC+V + NNWL T FI R A+RI++E+KF++RDC+ P
Sbjct: 25 EEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSV 84
Query: 63 ALSCKETFSLLYYE--FDAATREPPPW------------EPESYKL------IVNINTEV 102
SCKETF+L YYE FD AT+ P W ES+ ++ INTEV
Sbjct: 85 PGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEV 144
Query: 103 KSI-PVTKKGVYFAFRDQGACISLLAIKV 130
+S PV++ G Y AF+D G C+SL+A++V
Sbjct: 145 RSFGPVSRNGFYLAFQDYGGCMSLIAVRV 173
>pdb|1SHW|B Chain B, Ephb2 EPHRINA5 COMPLEX STRUCTURE
Length = 181
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 90/149 (60%), Gaps = 22/149 (14%)
Query: 4 ESFTNFEKGINW-RSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGN 62
E + +++ +N R+Y VC+V + NNWL T FI R A+RI++E+KF++RDC+ P
Sbjct: 26 EEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSV 85
Query: 63 ALSCKETFSLLYYE--FDAATREPPPW------------EPESYKL------IVNINTEV 102
SCKETF+L YYE FD AT+ P W ES+ ++ INTEV
Sbjct: 86 PGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEV 145
Query: 103 KSI-PVTKKGVYFAFRDQGACISLLAIKV 130
+S PV++ G Y AF+D G C+SL+A++V
Sbjct: 146 RSFGPVSRNGFYLAFQDYGGCMSLIAVRV 174
>pdb|3ETP|A Chain A, The Crystal Structure Of The Ligand-Binding Domain Of The
Ephb2 Receptor At 2.0 A Resolution
Length = 187
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 22/149 (14%)
Query: 4 ESFTNFEKGINW-RSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGN 62
E + +++ +N R+Y VC+V + NNWL T FI R A+RI++E+KF++RDC+ P
Sbjct: 32 EEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSV 91
Query: 63 ALSCKETFSLLYYE--FDAATREPPPW------------------EPESYKLIVNINTEV 102
SCKETF+L YYE FD AT+ P W + + ++ INTEV
Sbjct: 92 PGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESISQVDLGGRVMKINTEV 151
Query: 103 KSI-PVTKKGVYFAFRDQGACISLLAIKV 130
+S PV++ G Y AF+D G C+SL+A++V
Sbjct: 152 RSFGPVSRNGFYLAFQDYGGCMSLIAVRV 180
>pdb|3NRU|A Chain A, Ligand Binding Domain Of Epha7
pdb|3NRU|B Chain B, Ligand Binding Domain Of Epha7
pdb|3NRU|C Chain C, Ligand Binding Domain Of Epha7
pdb|3NRU|D Chain D, Ligand Binding Domain Of Epha7
pdb|3NRU|E Chain E, Ligand Binding Domain Of Epha7
pdb|3NRU|F Chain F, Ligand Binding Domain Of Epha7
pdb|3NRU|G Chain G, Ligand Binding Domain Of Epha7
pdb|3NRU|H Chain H, Ligand Binding Domain Of Epha7
pdb|3NRU|I Chain I, Ligand Binding Domain Of Epha7
pdb|3NRU|J Chain J, Ligand Binding Domain Of Epha7
pdb|3NRU|K Chain K, Ligand Binding Domain Of Epha7
pdb|3NRU|L Chain L, Ligand Binding Domain Of Epha7
Length = 187
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 82/132 (62%), Gaps = 17/132 (12%)
Query: 16 RSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYY 75
R+Y VC V N NNWL T +I +GNA RI++E+KFT+RDC PG +CKETF+L YY
Sbjct: 40 RTYQVCQVMEPNQNNWLRTNWISKGNAQRIFVELKFTLRDCNSLPGVLGTCKETFNLYYY 99
Query: 76 EFDAAT----RE------PPPWEPESY------KLIVNINTEVKSI-PVTKKGVYFAFRD 118
E D T RE ES+ + + +NTEV+ I P++KKG Y AF+D
Sbjct: 100 ETDYDTGRNIRENLYVKIDTIAADESFTQGDLGERKMKLNTEVREIGPLSKKGFYLAFQD 159
Query: 119 QGACISLLAIKV 130
GACI+L+++KV
Sbjct: 160 VGACIALVSVKV 171
>pdb|3GXU|A Chain A, Crystal Structure Of Eph Receptor And Ephrin Complex
Length = 175
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 84/147 (57%), Gaps = 18/147 (12%)
Query: 1 WVEESFTNFEKGINWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFP 60
W E S + EK R+Y VC+V + NNWL T +I R A R+YIEIKFT+RDC P
Sbjct: 26 WEEVSIMD-EKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLP 84
Query: 61 GNALSCKETFSLLYYE----------------FDAATREPPPWEPESYKLIVNINTEVKS 104
G +CKETF+L YYE D + + + I+ +NTE++
Sbjct: 85 GVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRD 144
Query: 105 I-PVTKKGVYFAFRDQGACISLLAIKV 130
+ P++KKG Y AF+D GACI+L++++V
Sbjct: 145 VGPLSKKGFYLAFQDVGACIALVSVRV 171
>pdb|2WO1|A Chain A, Crystal Structure Of The Epha4 Ligand Binding Domain
pdb|2WO1|B Chain B, Crystal Structure Of The Epha4 Ligand Binding Domain
pdb|2WO2|A Chain A, Crystal Structure Of The Epha4-Ephrinb2 Complex
pdb|2WO3|A Chain A, Crystal Structure Of The Epha4-Ephrina2 Complex
Length = 185
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 84/147 (57%), Gaps = 18/147 (12%)
Query: 1 WVEESFTNFEKGINWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFP 60
W E S + EK R+Y VC+V + NNWL T +I R A R+YIEIKFT+RDC P
Sbjct: 28 WEEVSIMD-EKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLP 86
Query: 61 GNALSCKETFSLLYYE----------------FDAATREPPPWEPESYKLIVNINTEVKS 104
G +CKETF+L YYE D + + + I+ +NTE++
Sbjct: 87 GVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRD 146
Query: 105 I-PVTKKGVYFAFRDQGACISLLAIKV 130
+ P++KKG Y AF+D GACI+L++++V
Sbjct: 147 VGPLSKKGFYLAFQDVGACIALVSVRV 173
>pdb|3CKH|A Chain A, Crystal Structure Of Eph A4 Receptor
pdb|3CKH|B Chain B, Crystal Structure Of Eph A4 Receptor
Length = 181
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 84/147 (57%), Gaps = 18/147 (12%)
Query: 1 WVEESFTNFEKGINWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFP 60
W E S + EK R+Y VC+V + NNWL T +I R A R+YIEIKFT+RDC P
Sbjct: 26 WEEVSIMD-EKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLP 84
Query: 61 GNALSCKETFSLLYYE----------------FDAATREPPPWEPESYKLIVNINTEVKS 104
G +CKETF+L YYE D + + + I+ +NTE++
Sbjct: 85 GVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRD 144
Query: 105 I-PVTKKGVYFAFRDQGACISLLAIKV 130
+ P++KKG Y AF+D GACI+L++++V
Sbjct: 145 VGPLSKKGFYLAFQDVGACIALVSVRV 171
>pdb|3P1I|A Chain A, Ligand Binding Domain Of Human Ephrin Type-B Receptor 3
pdb|3P1I|B Chain B, Ligand Binding Domain Of Human Ephrin Type-B Receptor 3
pdb|3P1I|C Chain C, Ligand Binding Domain Of Human Ephrin Type-B Receptor 3
Length = 200
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 85/145 (58%), Gaps = 18/145 (12%)
Query: 4 ESFTNFEKGIN-WRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGN 62
E + +++ +N R+Y VC+V + NNWL T FI R + R+Y+E+KFT+RDC P
Sbjct: 52 EEVSGYDEAMNPIRTYQVCNVRESSQNNWLRTGFIWRRDVQRVYVELKFTVRDCNSIPNI 111
Query: 63 ALSCKETFSLLYYEFDA--ATREPPPWEPESYKLIVNI--------------NTEVKSI- 105
SCKETF+L YYE D+ A+ P W Y + I NT+V+S
Sbjct: 112 PGSCKETFNLFYYEADSDVASASSPFWMENPYVKVDTIAPDESFSRLDAGRVNTKVRSFG 171
Query: 106 PVTKKGVYFAFRDQGACISLLAIKV 130
P++K G Y AF+DQGAC+SL++++
Sbjct: 172 PLSKAGFYLAFQDQGACMSLISVRA 196
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 99.0 bits (245), Expect = 6e-22, Method: Composition-based stats.
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 17/130 (13%)
Query: 18 YVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYE- 76
Y VC+V + +NWL T ++ RG A RI+IE+KFT+RDC FPG A SCKETF+L Y E
Sbjct: 69 YSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAES 128
Query: 77 ---------------FDAATREPPPWEPESYKLIVNINTEVKSI-PVTKKGVYFAFRDQG 120
D + + V +N E +S+ P+T+KG Y AF+D G
Sbjct: 129 DLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIG 188
Query: 121 ACISLLAIKV 130
AC++LL+++V
Sbjct: 189 ACVALLSVRV 198
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 98.6 bits (244), Expect = 8e-22, Method: Composition-based stats.
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 17/130 (13%)
Query: 18 YVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYE- 76
Y VC+V + +NWL T ++ RG A RI+IE+KFT+RDC FPG A SCKETF+L Y E
Sbjct: 72 YSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAES 131
Query: 77 ---------------FDAATREPPPWEPESYKLIVNINTEVKSI-PVTKKGVYFAFRDQG 120
D + + V +N E +S+ P+T+KG Y AF+D G
Sbjct: 132 DLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIG 191
Query: 121 ACISLLAIKV 130
AC++LL+++V
Sbjct: 192 ACVALLSVRV 201
>pdb|3MX0|A Chain A, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
pdb|3MX0|C Chain C, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
Length = 409
Score = 98.2 bits (243), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 17/130 (13%)
Query: 18 YVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYE- 76
Y VC+V + +NWL T ++ RG A RI+IE+KFT+RDC FPG A SCKETF+L Y E
Sbjct: 41 YSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAES 100
Query: 77 ---------------FDAATREPPPWEPESYKLIVNINTEVKSI-PVTKKGVYFAFRDQG 120
D + + V +N E +S+ P+T+KG Y AF+D G
Sbjct: 101 DLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIG 160
Query: 121 ACISLLAIKV 130
AC++LL+++V
Sbjct: 161 ACVALLSVRV 170
>pdb|3HEI|A Chain A, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|C Chain C, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|E Chain E, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|G Chain G, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|I Chain I, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|K Chain K, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|M Chain M, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|O Chain O, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|A Chain A, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|B Chain B, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|C Chain C, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|D Chain D, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|E Chain E, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|F Chain F, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
Length = 174
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 17/130 (13%)
Query: 18 YVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYE- 76
Y VC+V + +NWL T ++ RG A RI+IE+KFT+RDC FPG A SCKETF+L Y E
Sbjct: 40 YSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAES 99
Query: 77 ---------------FDAATREPPPWEPESYKLIVNINTEVKSI-PVTKKGVYFAFRDQG 120
D + + V +N E +S+ P+T+KG Y AF+D G
Sbjct: 100 DLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIG 159
Query: 121 ACISLLAIKV 130
AC++LL+++V
Sbjct: 160 ACVALLSVRV 169
>pdb|3C8X|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ephrin A2 (Epha2) Receptor Protein Kinase
pdb|3SKJ|E Chain E, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
pdb|3SKJ|F Chain F, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
Length = 206
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 17/130 (13%)
Query: 18 YVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYE- 76
Y VC+V + +NWL T ++ RG A RI+IE+KFT+RDC FPG A SCKETF+L Y E
Sbjct: 71 YSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAES 130
Query: 77 ---------------FDAATREPPPWEPESYKLIVNINTEVKSI-PVTKKGVYFAFRDQG 120
D + + V +N E +S+ P+T+KG Y AF+D G
Sbjct: 131 DLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIG 190
Query: 121 ACISLLAIKV 130
AC++LL+++V
Sbjct: 191 ACVALLSVRV 200
>pdb|3CZU|A Chain A, Crystal Structure Of The Human Ephrin A2- Ephrin A1
Complex
Length = 207
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 17/130 (13%)
Query: 18 YVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYE- 76
Y VC+V + +NWL T ++ RG A RI+IE+KFT+RDC FPG A SCKETF+L Y E
Sbjct: 72 YSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAES 131
Query: 77 ---------------FDAATREPPPWEPESYKLIVNINTEVKSI-PVTKKGVYFAFRDQG 120
D + + V +N E +S+ P+T+KG Y AF+D G
Sbjct: 132 DLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIG 191
Query: 121 ACISLLAIKV 130
AC++LL+++V
Sbjct: 192 ACVALLSVRV 201
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 17/130 (13%)
Query: 18 YVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYEF 77
Y VC+V + +NWL T ++ RG A RI+IE+KFT+RDC FPG A SCKETF+L Y E
Sbjct: 69 YSVCNVXSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAES 128
Query: 78 DAA--------------TREPPPWEPES--YKLIVNINTEVKSI-PVTKKGVYFAFRDQG 120
D T P S V +N E +S+ P+T+KG Y AF+D G
Sbjct: 129 DLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIG 188
Query: 121 ACISLLAIKV 130
AC++LL+++V
Sbjct: 189 ACVALLSVRV 198
>pdb|3MBW|A Chain A, Crystal Structure Of The Human Ephrin A2 Lbd And Crd
Domains In Complex With Ephrin A1
Length = 330
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 17/130 (13%)
Query: 18 YVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYEF 77
Y VC+V + +NWL T ++ RG A RI+IE+KFT+RDC FPG A SCKETF+L Y E
Sbjct: 71 YSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAES 130
Query: 78 DAA--------------TREPPPWEPES--YKLIVNINTEVKSI-PVTKKGVYFAFRDQG 120
D T P S V +N E +S+ P+T+KG Y AF+D G
Sbjct: 131 DLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIG 190
Query: 121 ACISLLAIKV 130
AC++LL+++V
Sbjct: 191 ACVALLSVRV 200
>pdb|2BBA|A Chain A, Crystal Structure And Thermodynamic Characterization Of
The Ephb4 Receptor In Complex With An Ephrin-B2
Antagonist Peptide Reveals The Determinants For Receptor
Specificity
Length = 185
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 22/137 (16%)
Query: 16 RSYVVCDVAYH-NVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLY 74
R+Y VCDV +WL T ++ R A +Y ++FT+ +C P SCKETF++ Y
Sbjct: 45 RTYEVCDVQRAPGQAHWLRTGWVPRRGAVHVYATLRFTMLECLSLPRAGRSCKETFTVFY 104
Query: 75 YEFDA--ATREPPPWEPESYKLIVNINTE----------------VKSI---PVTKKGVY 113
YE DA AT P W Y + + E VK++ P++K G Y
Sbjct: 105 YESDADTATALTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVNVKTLRLGPLSKAGFY 164
Query: 114 FAFRDQGACISLLAIKV 130
AF+DQGAC++LL++ +
Sbjct: 165 LAFQDQGACMALLSLHL 181
>pdb|2HLE|A Chain A, Structural And Biophysical Characterization Of The
Ephb4-ephrinb2 Protein Protein Interaction And Receptor
Specificity
Length = 188
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 22/137 (16%)
Query: 16 RSYVVCDVAYH-NVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLY 74
R+Y VCDV +WL T ++ R A +Y ++FT+ +C P SCKETF++ Y
Sbjct: 48 RTYEVCDVQRAPGQAHWLRTGWVPRRGAVHVYATLRFTMLECLSLPRAGRSCKETFTVFY 107
Query: 75 YEFDA--ATREPPPWEPESYKLIVNINTE----------------VKSI---PVTKKGVY 113
YE DA AT P W Y + + E VK++ P++K G Y
Sbjct: 108 YESDADTATALTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVNVKTLRLGPLSKAGFY 167
Query: 114 FAFRDQGACISLLAIKV 130
AF+DQGAC++LL++ +
Sbjct: 168 LAFQDQGACMALLSLHL 184
>pdb|4H0C|A Chain A, Crystal Structure Of PhospholipaseCARBOXYLESTERASE FROM
DYADOBACTER Fermentans Dsm 18053
pdb|4H0C|B Chain B, Crystal Structure Of PhospholipaseCARBOXYLESTERASE FROM
DYADOBACTER Fermentans Dsm 18053
Length = 210
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 75 YEFDAATREPPPWEPESYKLIVNINTEVKSIPVTKKGVYFAFRDQGACISL 125
Y F A ++ P + L+ + E+++ + + +YFA QGAC++L
Sbjct: 65 YSFXAPVQQNQPALDSALALVGEVVAEIEAQGIPAEQIYFAGFSQGACLTL 115
>pdb|1QIU|A Chain A, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|B Chain B, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|C Chain C, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|D Chain D, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|E Chain E, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|F Chain F, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
Length = 264
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 76 EFDAATREPPPWEPESYKLIVNINTEVKSIPVTKKGVYFAFRDQGA 121
EFD T E P P K+ I+ +TK G +F + GA
Sbjct: 25 EFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGLSFDNSGA 70
>pdb|1V1I|A Chain A, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Long Linker
pdb|1V1I|B Chain B, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Long Linker
pdb|1V1I|C Chain C, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Long Linker
Length = 109
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 76 EFDAATREPPPWEPESYKLIVNINTEVKSIPVTKKGVYFAFRDQGA 121
EFD T E P P K+ I+ +TK G +F + GA
Sbjct: 25 EFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGLSFDNSGA 70
>pdb|1V1H|A Chain A, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Short Linker
pdb|1V1H|B Chain B, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Short Linker
pdb|1V1H|C Chain C, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Short Linker
pdb|1V1H|D Chain D, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Short Linker
pdb|1V1H|E Chain E, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Short Linker
pdb|1V1H|F Chain F, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Short Linker
Length = 103
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 76 EFDAATREPPPWEPESYKLIVNINTEVKSIPVTKKGVYFAFRDQGA 121
EFD T E P P K+ I+ +TK G +F + GA
Sbjct: 25 EFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGLSFDNSGA 70
>pdb|3OHE|A Chain A, Crystal Structure Of A Histidine Triad Protein
(Maqu_1709) From Marinobacter Aquaeolei Vt8 At 1.20 A
Resolution
pdb|3OHE|B Chain B, Crystal Structure Of A Histidine Triad Protein
(Maqu_1709) From Marinobacter Aquaeolei Vt8 At 1.20 A
Resolution
Length = 137
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 20 VCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALS 65
+CDV N N W W + R + R E+ + LF +ALS
Sbjct: 21 LCDVLLXNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALS 66
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 13 INWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYI 47
+N+ V D++Y+ + ++ PF++ R+YI
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 13 INWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYI 47
+N+ V D++Y+ + ++ PF++ R+YI
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,230,292
Number of Sequences: 62578
Number of extensions: 163089
Number of successful extensions: 317
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 46
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)