Query psy17097
Match_columns 130
No_of_seqs 102 out of 177
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:47:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01404 Ephrin_lbd: Ephrin re 100.0 3.6E-64 7.8E-69 393.1 16.0 127 4-130 25-173 (178)
2 KOG0196|consensus 100.0 5.3E-61 1.1E-65 437.4 13.7 127 4-130 52-198 (996)
3 smart00615 EPH_lbd Ephrin rece 100.0 9.3E-44 2E-48 276.1 8.3 125 6-130 27-173 (177)
4 smart00615 EPH_lbd Ephrin rece 100.0 2.2E-34 4.8E-39 223.6 5.5 127 4-130 21-169 (177)
5 PF07675 Cleaved_Adhesin: Clea 94.8 0.038 8.2E-07 42.2 3.7 42 27-79 60-101 (167)
6 PF04260 DUF436: Protein of un 49.0 7.5 0.00016 31.0 0.7 11 107-117 56-66 (172)
7 PF13121 DUF3976: Domain of un 48.3 3.5 7.5E-05 25.5 -1.0 8 106-113 14-21 (41)
8 COG4475 Uncharacterized protei 46.9 9.5 0.00021 30.4 1.0 11 107-117 61-71 (180)
9 TIGR01440 conserved hypothetic 45.0 11 0.00024 30.1 1.0 11 107-117 56-66 (172)
10 PRK13690 hypothetical protein; 44.0 11 0.00023 30.4 0.8 11 107-117 63-73 (184)
11 KOG1672|consensus 43.4 23 0.00051 29.0 2.7 33 90-122 116-162 (211)
12 PF11161 DUF2944: Protein of u 41.0 15 0.00033 29.6 1.3 13 40-52 72-84 (187)
13 PF11767 SET_assoc: Histone ly 36.3 24 0.00052 23.7 1.5 14 107-120 31-44 (66)
14 cd04487 RecJ_OBF2_like RecJ_OB 34.0 65 0.0014 21.4 3.4 25 101-126 6-31 (73)
15 COG0396 sufC Cysteine desulfur 22.3 40 0.00086 28.4 0.8 24 96-119 61-90 (251)
16 COG1854 LuxS LuxS protein invo 20.7 95 0.0021 24.6 2.6 21 98-118 70-92 (161)
17 PF06072 Herpes_US9: Alphaherp 20.1 27 0.0006 23.4 -0.5 11 73-83 2-12 (60)
No 1
>PF01404 Ephrin_lbd: Ephrin receptor ligand binding domain; InterPro: IPR001090 Interactions between the Eph receptor tyrosine kinases and their membrane-bound ligands, ephrins are promiscuous, but largely fall into two groups: EphA receptors bind to GPI-anchored ephrin-A ligands, while EphB receptors bind to ephrin-B proteins that have a transmembrane and cytoplasmic domain []. Remarkably, ephrin-B proteins transduce signals, such that bidirectional signalling can occur upon interaction with Eph receptor. An important role of Eph receptors and ephrins is to mediate cell-contact-dependent repulsion. Eph receptors and ephrins also act at boundaries to channel neuronal growth cones along specific pathways, restrict the migration of neural crest cells, and via bidirectional signalling prevent intermingling between hindbrain segments. Intriguingly, Eph receptors and ephrins can also trigger an adhesive response of endothelial cells and are required for the remodelling of blood vessels []. Biochemical studies suggest that the extent of multimerisation of Eph receptors modulates the cellular response and that the actin cytoskeleton is one major target of the intracellular pathways activated by Eph receptors []. Eph receptors and ephrins have thus emerged as key regulators of the repulsion and adhesion of cells that underlie the establishment, maintenance, and remodelling of patterns of cellular organisation [].; GO: 0005003 ephrin receptor activity, 0005524 ATP binding, 0016020 membrane; PDB: 2BBA_A 2HLE_A 3NRU_L 1SHW_B 1KGY_A 3ETP_A 1NUK_A 2WO2_A 3CKH_A 2WO3_A ....
Probab=100.00 E-value=3.6e-64 Score=393.12 Aligned_cols=127 Identities=50% Similarity=0.990 Sum_probs=110.9
Q ss_pred cceecccCCcc-eEEEEecccCCCCCCceeeecceecCCcceEEEEEEEEEeccCCCCCCCCCccceeeeeEEEecCCCC
Q psy17097 4 ESFTNFEKGIN-WRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYEFDAATR 82 (130)
Q Consensus 4 ee~s~~d~~~~-~rtyqvC~v~~~~q~NWLrT~~I~r~ga~rv~Vel~Ft~rdC~s~~~~~~~CKETFnLyy~esd~~~~ 82 (130)
||+|++|++.+ +||||||+|+.++|||||||+||+|+||+||||||+||||||+|+|+++++|||||||||||+|.+.+
T Consensus 25 ~e~s~~d~~~~~~rty~vC~v~~~~q~NWLrT~~I~r~~A~rv~Vel~Ft~rdC~s~~~~~~sCkETFnLyy~esd~~~~ 104 (178)
T PF01404_consen 25 EEVSGLDENGNPIRTYQVCNVMESNQNNWLRTPFIPRRGASRVYVELKFTMRDCSSFPGVAGSCKETFNLYYYESDSDDA 104 (178)
T ss_dssp EEEEEEETTSEEEEEEEEEGTTSSS-EEEEE---EE-TT-SSEEEEEEEEEB-GGGSTTSTTTSBSEEEEEEEEESSSTT
T ss_pred eecccccCCCCeeEEEeeCCCCCCCCCCeEEcccEECCCCcEEEEEEEEEehhcccCCCCCCcccceeeeeeeecccccc
Confidence 57888987766 99999999999999999999999999999999999999999999999999999999999999998433
Q ss_pred --CCCCCCCCCceeE------------------EEeeEEEEEE-eecCCeeEEEEecCCceEEEEEEeC
Q psy17097 83 --EPPPWEPESYKLI------------------VNINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKV 130 (130)
Q Consensus 83 --~~~~~~~~~y~KV------------------~~~N~e~~~~-~lsk~GfYLAFqD~GAC~aL~sVrV 130 (130)
..|+|++++|+|| +++|+|+|+| ||||+||||||||+||||||+||||
T Consensus 105 ~~~~~~~~~~~y~kvdTIAade~f~~~~~~~~~~~~Nte~~s~g~ls~~GfYLAfqD~GAC~aL~sVrV 173 (178)
T PF01404_consen 105 TSNSPAWNENPYTKVDTIAADESFTQSDFGDRSVKLNTETRSFGPLSKRGFYLAFQDQGACMALLSVRV 173 (178)
T ss_dssp TSSSSSSSGCCSEEEEEEE-SSEBEEEECTTEEEEEEEEEEEES--SSSEEEEEEEESSBEEEEEEEEE
T ss_pred cccccccCcccccccccccccccccccccCCceeEEEeeeeeccccCcceEEEEeccCCceEEEEEEEE
Confidence 4689999999999 5899999999 9999999999999999999999997
No 2
>KOG0196|consensus
Probab=100.00 E-value=5.3e-61 Score=437.38 Aligned_cols=127 Identities=54% Similarity=0.946 Sum_probs=122.9
Q ss_pred cceecccCCcc-eEEEEecccCCCCCCceeeecceecCCcceEEEEEEEEEeccCCCCCCCCCccceeeeeEEEecCCCC
Q psy17097 4 ESFTNFEKGIN-WRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYEFDAATR 82 (130)
Q Consensus 4 ee~s~~d~~~~-~rtyqvC~v~~~~q~NWLrT~~I~r~ga~rv~Vel~Ft~rdC~s~~~~~~~CKETFnLyy~esd~~~~ 82 (130)
||+|++||+.. +||||||||++++|||||||+||+|+||+||||||+||+|||+|+|+++++|||||||||||+|.|.+
T Consensus 52 ee~s~~De~~~~irtYqvCnv~~~~qnNWLrT~~I~r~~A~RiyiEl~FTvRDC~S~p~~~gsCKETFnLyy~EsD~d~~ 131 (996)
T KOG0196|consen 52 EEVSGTDENGTPIRTYQVCNVMEPNQNNWLRTNFIERRGAQRIYIELKFTVRDCNSLPGVAGSCKETFNLYYYESDADTG 131 (996)
T ss_pred hhhhhhcccCCceEEEEecccccCCCCcccccCcEecCCceEEEEEEEEeehhhhcCCCCCccccceeeeEEEeeccccC
Confidence 57899999645 99999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCceeE------------------EEeeEEEEEE-eecCCeeEEEEecCCceEEEEEEeC
Q psy17097 83 EPPPWEPESYKLI------------------VNINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKV 130 (130)
Q Consensus 83 ~~~~~~~~~y~KV------------------~~~N~e~~~~-~lsk~GfYLAFqD~GAC~aL~sVrV 130 (130)
..|+|++++|+|| ||+|||+|+| ||||+||||||||+|||||||||||
T Consensus 132 ~~~~~~e~~~~kIDtIAadesf~~~d~~~r~mklNte~rs~Gpltk~GfYlAFqd~GAC~aLlsVrv 198 (996)
T KOG0196|consen 132 TKPIWRENPFVKIDTIAADESFTQSDLGDRVMKLNTEVRSVGPLTKKGFYLAFQDQGACLALLSVRV 198 (996)
T ss_pred CCcccccccceeeeeeeccCceecccCccceeEeeeeeEeccccccceEEEEEecCCceEEEEEEEe
Confidence 8889999999999 8999999999 9999999999999999999999997
No 3
>smart00615 EPH_lbd Ephrin receptor ligand binding domain.
Probab=100.00 E-value=9.3e-44 Score=276.05 Aligned_cols=125 Identities=50% Similarity=0.945 Sum_probs=108.4
Q ss_pred eecccCCcc-eEEEEecccCCCCCCceeeecceecCCcceEEEEEEEEEeccCCCCCCCCCccceeeeeEEEecCCCC--
Q psy17097 6 FTNFEKGIN-WRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYEFDAATR-- 82 (130)
Q Consensus 6 ~s~~d~~~~-~rtyqvC~v~~~~q~NWLrT~~I~r~ga~rv~Vel~Ft~rdC~s~~~~~~~CKETFnLyy~esd~~~~-- 82 (130)
++++|+... +|+|++|++++++|+|||||+||+|++|+||||||+|++|+|+++|+..++|||||+|||+|+|.+.+
T Consensus 27 ~~~~~~~~~~~~~~~~c~~~~~~~~nwl~t~~i~~r~a~ri~~elrf~~r~c~~~~~c~eTcketf~~~~~~~~~~~~~~ 106 (177)
T smart00615 27 VSGMDENGTPIRTYQVCNVQEGNQNNWLRTNFIRRRGAQRIYVELKFTVRDCSSLPGVGGSCKETFNLYYYESDTDTATN 106 (177)
T ss_pred ccCcCCCcceEEEEeeCCCCCccccCccCcccccccceEEEEEEEEEEEecCCCCCCCcccccceeehheeccccccccc
Confidence 445555544 99999999998999999999999999999999999999999999999889999999999999987654
Q ss_pred CCCCCCCCCceeE------------------EEeeEEEEEE-eecCCeeEEEEecCCceEEEEEEeC
Q psy17097 83 EPPPWEPESYKLI------------------VNINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKV 130 (130)
Q Consensus 83 ~~~~~~~~~y~KV------------------~~~N~e~~~~-~lsk~GfYLAFqD~GAC~aL~sVrV 130 (130)
..|+|.+.+|+|+ +++|++++.+ |++++||||||||+|||||||+|||
T Consensus 107 ~~~~~~~k~~tka~t~a~~~~~~~~~~~~~n~~vn~~~~~~~~~~~~gFy~a~~~~g~c~~~v~~kv 173 (177)
T smart00615 107 TLPNWMENPYTKVDTIAADESFTGGDVGKRNVKLNTEVRSLGPLSKKGFYLAFQDQGACVALVSVRV 173 (177)
T ss_pred cCcccccCCCeEeeeeeccccccccccccceeEEeeeecccCCccHHHHHHHhhhheeeEEEEEEEE
Confidence 3577888999998 3455556666 6788999999999999999999986
No 4
>smart00615 EPH_lbd Ephrin receptor ligand binding domain.
Probab=100.00 E-value=2.2e-34 Score=223.57 Aligned_cols=127 Identities=6% Similarity=-0.193 Sum_probs=117.0
Q ss_pred cceecccCCcc-eEEEEecccCCCCCCceeeecceecCCcceEEEEEEEEEeccCCCCCCCCCccceeeeeEEEecCCCC
Q psy17097 4 ESFTNFEKGIN-WRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYEFDAATR 82 (130)
Q Consensus 4 ee~s~~d~~~~-~rtyqvC~v~~~~q~NWLrT~~I~r~ga~rv~Vel~Ft~rdC~s~~~~~~~CKETFnLyy~esd~~~~ 82 (130)
+|+++.+++.+ +|+||+|++..+.|+|||++.||.+.+++|+++||+|+||+|.++++..++|||||++||++++.+.+
T Consensus 21 ~~~w~~~~~~~~~~~~~~~~~~c~~~~~~~~nwl~t~~i~~r~a~ri~~elrf~~r~c~~~~~c~eTcketf~~~~~~~~ 100 (177)
T smart00615 21 PEGWEEVSGMDENGTPIRTYQVCNVQEGNQNNWLRTNFIRRRGAQRIYVELKFTVRDCSSLPGVGGSCKETFNLYYYESD 100 (177)
T ss_pred ccCcccccCcCCCcceEEEEeeCCCCCccccCccCcccccccceEEEEEEEEEEEecCCCCCCCcccccceeehheeccc
Confidence 56777787755 99999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC--CCCCCCceeE-EEe-----------------eEEEEEE-eecCCeeEEEEecCCceEEEEEEeC
Q psy17097 83 EPP--PWEPESYKLI-VNI-----------------NTEVKSI-PVTKKGVYFAFRDQGACISLLAIKV 130 (130)
Q Consensus 83 ~~~--~~~~~~y~KV-~~~-----------------N~e~~~~-~lsk~GfYLAFqD~GAC~aL~sVrV 130 (130)
..+ +|+++.|.|+ .++ |+|++++ |++++|||+||||+||||||+++||
T Consensus 101 ~~~~~~~~~~~~~k~~tka~t~a~~~~~~~~~~~~~n~~vn~~~~~~~~~~~~gFy~a~~~~g~c~~~v 169 (177)
T smart00615 101 TDTATNTLPNWMENPYTKVDTIAADESFTGGDVGKRNVKLNTEVRSLGPLSKKGFYLAFQDQGACVALV 169 (177)
T ss_pred cccccccCcccccCCCeEeeeeeccccccccccccceeEEeeeecccCCccHHHHHHHhhhheeeEEEE
Confidence 655 4999999999 677 5789999 9999999999999999999999996
No 5
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=94.79 E-value=0.038 Score=42.17 Aligned_cols=42 Identities=26% Similarity=0.484 Sum_probs=24.2
Q ss_pred CCCceeeecceecCCcceEEEEEEEEEeccCCCCCCCCCccceeeeeEEEecC
Q psy17097 27 NVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYEFDA 79 (130)
Q Consensus 27 ~q~NWLrT~~I~r~ga~rv~Vel~Ft~rdC~s~~~~~~~CKETFnLyy~esd~ 79 (130)
.+||||.||=| .|++ .|+|.++.-. .....|+|.++|.-++.
T Consensus 60 ~~DnWLISP~l--~g~~----~i~f~v~~~~-----~~~~~E~y~V~~Sttg~ 101 (167)
T PF07675_consen 60 TADNWLISPQL--SGAQ----TISFWVKSQD-----ASYGPEHYEVLYSTTGN 101 (167)
T ss_dssp --EEEEE-S----TT-E----EEEEEEEECT-----TTC---EEEEEEESS-S
T ss_pred CCCceEEecCc--CCCC----EEEEEEEecc-----CCCCCceEEEEEecCCC
Confidence 57999999999 7765 5788887633 23468999999997654
No 6
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=48.97 E-value=7.5 Score=30.99 Aligned_cols=11 Identities=36% Similarity=1.096 Sum_probs=8.9
Q ss_pred ecCCeeEEEEe
Q psy17097 107 VTKKGVYFAFR 117 (130)
Q Consensus 107 lsk~GfYLAFq 117 (130)
+.++|+|||||
T Consensus 56 ~~~~gi~LA~Q 66 (172)
T PF04260_consen 56 LKERGIYLAFQ 66 (172)
T ss_dssp HHTTT-EEEEE
T ss_pred HHHcCcEEEEE
Confidence 47899999999
No 7
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=48.28 E-value=3.5 Score=25.48 Aligned_cols=8 Identities=50% Similarity=1.032 Sum_probs=7.1
Q ss_pred eecCCeeE
Q psy17097 106 PVTKKGVY 113 (130)
Q Consensus 106 ~lsk~GfY 113 (130)
.|||+|||
T Consensus 14 tltkrgfy 21 (41)
T PF13121_consen 14 TLTKRGFY 21 (41)
T ss_pred eeehhhHH
Confidence 58999998
No 8
>COG4475 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.93 E-value=9.5 Score=30.41 Aligned_cols=11 Identities=45% Similarity=0.785 Sum_probs=10.1
Q ss_pred ecCCeeEEEEe
Q psy17097 107 VTKKGVYFAFR 117 (130)
Q Consensus 107 lsk~GfYLAFq 117 (130)
+.|+|++||||
T Consensus 61 ~~~tGv~lA~Q 71 (180)
T COG4475 61 LKKTGVHLAFQ 71 (180)
T ss_pred HhccceEEEee
Confidence 57999999999
No 9
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=45.04 E-value=11 Score=30.08 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=9.6
Q ss_pred ecCCeeEEEEe
Q psy17097 107 VTKKGVYFAFR 117 (130)
Q Consensus 107 lsk~GfYLAFq 117 (130)
+.++|+|||||
T Consensus 56 ~~~~gi~lA~Q 66 (172)
T TIGR01440 56 LKKTGVTLAFQ 66 (172)
T ss_pred hhhcCeEEEEe
Confidence 35899999999
No 10
>PRK13690 hypothetical protein; Provisional
Probab=43.96 E-value=11 Score=30.41 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=9.7
Q ss_pred ecCCeeEEEEe
Q psy17097 107 VTKKGVYFAFR 117 (130)
Q Consensus 107 lsk~GfYLAFq 117 (130)
+.++|+|||||
T Consensus 63 ~~~~gi~LA~Q 73 (184)
T PRK13690 63 LKETGIHLAVQ 73 (184)
T ss_pred hhhcCcEEEEe
Confidence 36899999999
No 11
>KOG1672|consensus
Probab=43.41 E-value=23 Score=29.03 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=26.8
Q ss_pred CCceeE---------EEeeEEEEEE-eecCCe----eEEEEecCCce
Q psy17097 90 ESYKLI---------VNINTEVKSI-PVTKKG----VYFAFRDQGAC 122 (130)
Q Consensus 90 ~~y~KV---------~~~N~e~~~~-~lsk~G----fYLAFqD~GAC 122 (130)
-.|.|| .+||.++... .|-++| .++.|+|.|+|
T Consensus 116 TrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnk 162 (211)
T KOG1672|consen 116 TRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGNK 162 (211)
T ss_pred ceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCCC
Confidence 367887 5899998888 776666 68999999997
No 12
>PF11161 DUF2944: Protein of unknown function (DUF2946); InterPro: IPR021332 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=40.98 E-value=15 Score=29.56 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=11.4
Q ss_pred CCcceEEEEEEEE
Q psy17097 40 GNANRIYIEIKFT 52 (130)
Q Consensus 40 ~ga~rv~Vel~Ft 52 (130)
.|.|||||||.+|
T Consensus 72 NGPQRVYV~Le~t 84 (187)
T PF11161_consen 72 NGPQRVYVELEYT 84 (187)
T ss_pred cCCEEEEEEeccC
Confidence 4899999999876
No 13
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=36.27 E-value=24 Score=23.66 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.7
Q ss_pred ecCCeeEEEEecCC
Q psy17097 107 VTKKGVYFAFRDQG 120 (130)
Q Consensus 107 lsk~GfYLAFqD~G 120 (130)
.-+.|||+.|-|..
T Consensus 31 ~d~tGfYIvF~~~~ 44 (66)
T PF11767_consen 31 DDRTGFYIVFNDSK 44 (66)
T ss_pred ecCCEEEEEECChH
Confidence 37899999999864
No 14
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=34.01 E-value=65 Score=21.42 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=18.4
Q ss_pred EEEEEeecCCe-eEEEEecCCceEEEE
Q psy17097 101 EVKSIPVTKKG-VYFAFRDQGACISLL 126 (130)
Q Consensus 101 e~~~~~lsk~G-fYLAFqD~GAC~aL~ 126 (130)
|+-+++. +.| .|+.+.|.+|.+..+
T Consensus 6 eVs~~~~-~~GHvyfsLkD~~a~i~cv 31 (73)
T cd04487 6 EVVQIKQ-TSGPTIFTLRDETGTVWAA 31 (73)
T ss_pred EEecccc-CCCCEEEEEEcCCEEEEEE
Confidence 4445533 566 999999999887764
No 15
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.33 E-value=40 Score=28.39 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=17.7
Q ss_pred EEeeEEEEEE-ee-----cCCeeEEEEecC
Q psy17097 96 VNINTEVKSI-PV-----TKKGVYFAFRDQ 119 (130)
Q Consensus 96 ~~~N~e~~~~-~l-----sk~GfYLAFqD~ 119 (130)
-++-.+-.+| .| .++|++||||..
T Consensus 61 G~I~~~GedI~~l~~~ERAr~GifLafQ~P 90 (251)
T COG0396 61 GEILFDGEDILELSPDERARAGIFLAFQYP 90 (251)
T ss_pred ceEEECCcccccCCHhHHHhcCCEEeecCC
Confidence 3566666666 55 489999999985
No 16
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=20.71 E-value=95 Score=24.56 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=17.0
Q ss_pred eeEEEEEE-ee-cCCeeEEEEec
Q psy17097 98 INTEVKSI-PV-TKKGVYFAFRD 118 (130)
Q Consensus 98 ~N~e~~~~-~l-sk~GfYLAFqD 118 (130)
-|+|+.+| |. =+.||||.++.
T Consensus 70 g~~~iID~SPMGCrTGFYm~l~G 92 (161)
T COG1854 70 GNVEIIDISPMGCRTGFYMILIG 92 (161)
T ss_pred CceeEEEecCcccccceEEEEEC
Confidence 34788899 88 68999999864
No 17
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=20.10 E-value=27 Score=23.42 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=8.4
Q ss_pred eEEEecCCCCC
Q psy17097 73 LYYEFDAATRE 83 (130)
Q Consensus 73 yy~esd~~~~~ 83 (130)
||.|||+.+++
T Consensus 2 YYSESDnETA~ 12 (60)
T PF06072_consen 2 YYSESDNETAT 12 (60)
T ss_pred CcCccccccHH
Confidence 89999986553
Done!