RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17097
(130 letters)
>2qbx_A Ephrin type-B receptor 2; receptor tyrosine kinase, BI-directional
signaling, tumorigenesis, angiogenesis, signaling
protein, structural genomics; 2.30A {Homo sapiens}
Length = 208
Score = 170 bits (431), Expect = 5e-55
Identities = 62/151 (41%), Positives = 87/151 (57%), Gaps = 22/151 (14%)
Query: 1 WVEESFTNFEKGINWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFP 60
W E S + E R+Y VC+V + NNWL T FI R A+RI++E+KF++RDC+ P
Sbjct: 55 WEEVSGYD-ENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIP 113
Query: 61 GNALSCKETFSLLYYE--FDAATREPPPWEPESYKLI------------------VNINT 100
SCKETF+L YYE FD+AT+ P W + + + INT
Sbjct: 114 SVPGSCKETFNLYYYEADFDSATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINT 173
Query: 101 EVKSI-PVTKKGVYFAFRDQGACISLLAIKV 130
EV+S PV++ G Y AF+D G C+SL+A++V
Sbjct: 174 EVRSFGPVSRSGFYLAFQDYGGCMSLIAVRV 204
>3p1i_A Ephrin type-B receptor 3; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase, glycoprotein; 2.10A {Homo
sapiens}
Length = 200
Score = 166 bits (422), Expect = 7e-54
Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 18/147 (12%)
Query: 1 WVEESFTNFEKGINWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFP 60
W E S + E R+Y VC+V + NNWL T FI R + R+Y+E+KFT+RDC P
Sbjct: 51 WEEVSGYD-EAMNPIRTYQVCNVRESSQNNWLRTGFIWRRDVQRVYVELKFTVRDCNSIP 109
Query: 61 GNALSCKETFSLLYYEFDA--ATREPPPWEPESYKLIVNI--------------NTEVKS 104
SCKETF+L YYE D+ A+ P W Y + I NT+V+S
Sbjct: 110 NIPGSCKETFNLFYYEADSDVASASSPFWMENPYVKVDTIAPDESFSRLDAGRVNTKVRS 169
Query: 105 I-PVTKKGVYFAFRDQGACISLLAIKV 130
P++K G Y AF+DQGAC+SL++++
Sbjct: 170 FGPLSKAGFYLAFQDQGACMSLISVRA 196
>3c8x_A Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase, glycoprotein; 1.95A {Homo
sapiens} PDB: 3skj_E 3czu_A* 3hei_A 3hpn_A
Length = 206
Score = 161 bits (409), Expect = 1e-51
Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 21/146 (14%)
Query: 4 ESFTNFEKGINWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNA 63
+ N + Y VC+V + +NWL T ++ RG A RI+IE+KFT+RDC FPG A
Sbjct: 57 DLMQNIMNDMPIYMYSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGA 116
Query: 64 LSCKETFSLLYYEFDAATREPPPWEPESYKLI------------------VNINTEVKSI 105
SCKETF+L Y E D ++ + I V +N E +S+
Sbjct: 117 SSCKETFNLYYAESD--LDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSV 174
Query: 106 -PVTKKGVYFAFRDQGACISLLAIKV 130
P+T+KG Y AF+D GAC++LL+++V
Sbjct: 175 GPLTRKGFYLAFQDIGACVALLSVRV 200
>2bba_A Ephrin type-B receptor 4; EPHB4, tumorigenesis, angiogenesis,
peptide mimetics, signal protein, structural genomics,
PSI-2; 1.65A {Homo sapiens} SCOP: b.18.1.4 PDB: 2hle_A
Length = 185
Score = 160 bits (405), Expect = 2e-51
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
Query: 1 WVEESFTNFEKGINWRSYVVCDVAY-HNVNNWLWTPFIERGNANRIYIEIKFTIRDCALF 59
EE E+ + R+Y VCDV +WL T ++ R A +Y ++FT+ +C
Sbjct: 30 QWEELSGLDEEQHSVRTYEVCDVQRAPGQAHWLRTGWVPRRGAVHVYATLRFTMLECLSL 89
Query: 60 PGNALSCKETFSLLYYEFDA--ATREPPPWEPESYKLI------------------VNIN 99
P SCKETF++ YYE DA AT P W Y + +N
Sbjct: 90 PRAGRSCKETFTVFYYESDADTATALTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVN 149
Query: 100 TEVKSI-PVTKKGVYFAFRDQGACISLLAIKV 130
+ + P++K G Y AF+DQGAC++LL++ +
Sbjct: 150 VKTLRLGPLSKAGFYLAFQDQGACMALLSLHL 181
>3etp_A Ephrin type-B receptor 2; EPH receptor, tyrosine kinase,
alternative splicing, ATP- binding, glycoprotein,
kinase, membrane, nucleotide- binding; 2.00A {Mus
musculus} PDB: 1nuk_A 1kgy_A 1shw_B*
Length = 187
Score = 159 bits (403), Expect = 4e-51
Identities = 62/151 (41%), Positives = 86/151 (56%), Gaps = 22/151 (14%)
Query: 1 WVEESFTNFEKGINWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFP 60
W E S + E R+Y VC+V + NNWL T FI R A+RI++E+KF++RDC+ P
Sbjct: 31 WEEVSGYD-ENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIP 89
Query: 61 GNALSCKETFSLLYYE--FDAATREPPPWEPESYKLI------------------VNINT 100
SCKETF+L YYE FD AT+ P W + + + INT
Sbjct: 90 SVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESISQVDLGGRVMKINT 149
Query: 101 EVKSI-PVTKKGVYFAFRDQGACISLLAIKV 130
EV+S PV++ G Y AF+D G C+SL+A++V
Sbjct: 150 EVRSFGPVSRNGFYLAFQDYGGCMSLIAVRV 180
>2wo1_A Ephrin type-A receptor; glycoprotein, AXON guidance, vascular
development, cell SURF receptor, transferase, cell
signaling; 1.85A {Homo sapiens} PDB: 2wo2_A* 2wo3_A*
3ckh_A 3gxu_A 3nru_A
Length = 185
Score = 157 bits (399), Expect = 1e-50
Identities = 59/149 (39%), Positives = 83/149 (55%), Gaps = 22/149 (14%)
Query: 1 WVEESFTNFEKGINWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFP 60
W E S + EK R+Y VC+V + NNWL T +I R A R+YIEIKFT+RDC P
Sbjct: 28 WEEVSIMD-EKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLP 86
Query: 61 GNALSCKETFSLLYYEFDAATREPPPWEPESYKLI------------------VNINTEV 102
G +CKETF+L YYE D + + I + +NTE+
Sbjct: 87 GVMGTCKETFNLYYYESD--NDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEI 144
Query: 103 KSI-PVTKKGVYFAFRDQGACISLLAIKV 130
+ + P++KKG Y AF+D GACI+L++++V
Sbjct: 145 RDVGPLSKKGFYLAFQDVGACIALVSVRV 173
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 162 bits (410), Expect = 1e-48
Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 21/146 (14%)
Query: 4 ESFTNFEKGINWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFPGNA 63
+ N + Y VC+V + +NWL T ++ RG A RI+IE+KFT+RDC FPG A
Sbjct: 58 DLMQNIMNDMPIYMYSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGA 117
Query: 64 LSCKETFSLLYYEFDAATREPPPWEPESYKLI------------------VNINTEVKSI 105
SCKETF+L Y E D ++ + I V +N E +S+
Sbjct: 118 SSCKETFNLYYAESDLDYG--TNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSV 175
Query: 106 -PVTKKGVYFAFRDQGACISLLAIKV 130
P+T+KG Y AF+D GAC++LL+++V
Sbjct: 176 GPLTRKGFYLAFQDIGACVALLSVRV 201
>2hlj_A Hypothetical protein; putative thioesterase, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; HET: MSE; 2.00A {Pseudomonas
putida} SCOP: d.38.1.1
Length = 157
Score = 27.9 bits (61), Expect = 0.72
Identities = 8/95 (8%), Positives = 25/95 (26%), Gaps = 3/95 (3%)
Query: 14 NWRSYVVCDVAYHNVN-NWLWTPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSL 72
+ S + + ++ L T + + K +L
Sbjct: 53 SGNSLFTLEAHINYLHEVKLGTEV--WVQTQILGFDRKRLHVYHSLHRAGFDEVLAASEQ 110
Query: 73 LYYEFDAATREPPPWEPESYKLIVNINTEVKSIPV 107
+ D A + P+ + + ++ + +
Sbjct: 111 MLLHVDLAGPQSAPFGHTTVCRLNHLVEQQEGAQA 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.99
Identities = 7/47 (14%), Positives = 11/47 (23%), Gaps = 8/47 (17%)
Query: 74 YYEFDAATREPPPWEPESYKLIVNINTEVKSIPVTKKGVYFAFRDQG 120
Y + P + S L + + F QG
Sbjct: 126 YITARIMAKRPFDKKSNS-ALFRAVGEG-------NAQLVAIFGGQG 164
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain,
beta-sandwich domai glycosyl hydrolase, glycosida
hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB:
3k46_A* 3k4d_A* 3lpg_A* 3k4a_A
Length = 605
Score = 27.3 bits (61), Expect = 1.9
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 34 TPFIERGNANRIYIEIKFTIRDCALFPGNALSCKETFSLLYYEFD 78
TP++ G + RI + + + + PG ++ + Y D
Sbjct: 121 TPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHD 165
>1usu_B AHA1; chaperone/complex, chaperone, activator, HSP90; 2.15A
{Saccharomyces cerevisiae} SCOP: d.83.2.1 PDB: 1usv_B
Length = 170
Score = 26.1 bits (57), Expect = 3.3
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 26 HNVNNWLWT 34
+N NNW W
Sbjct: 18 NNPNNWHWV 26
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, carbohydrate
esterase family 4; 2.01A {Mycobacterium smegmatis}
Length = 300
Score = 26.2 bits (58), Expect = 3.6
Identities = 3/20 (15%), Positives = 6/20 (30%)
Query: 65 SCKETFSLLYYEFDAATREP 84
+ + L E +A
Sbjct: 215 TPAKAIELWRAELNAMRDIG 234
>3m1h_A Lysine specific cysteine protease; beta jelly roll barrel, cleaved
adhesin family, Lys-gingipai hemagglutination domain;
1.56A {Porphyromonas gingivalis}
Length = 178
Score = 25.2 bits (54), Expect = 7.9
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 5/96 (5%)
Query: 27 NVNNWLWTPFIERGNANRIY-----IEIKFTIRDCALFPGNALSCKETFSLLYYEFDAAT 81
N +N+L TP + + + + A++ + + F+ E
Sbjct: 63 NPDNYLVTPELSLPGGGTLTFWVCAQDANYASEHYAVYASSTGNDASNFANALLEEVLTA 122
Query: 82 REPPPWEPESYKLIVNINTEVKSIPVTKKGVYFAFR 117
+ K++ + Y AFR
Sbjct: 123 KTVVTAPEAIRGTRAQGTWYQKTVQLPAGTKYVAFR 158
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain
dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Length = 381
Score = 25.0 bits (55), Expect = 8.5
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 2 VEESFTNFEKGINWRSYVVCDVAY 25
++ SF G+NW+ YV D Y
Sbjct: 291 LDVSFG--YLGLNWKDYVEIDQRY 312
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase,
rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas
aeruginosa} SCOP: c.2.1.2
Length = 335
Score = 24.8 bits (55), Expect = 9.2
Identities = 5/24 (20%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 2 VEESFTNFEKGINWRSYVVCDVAY 25
+ +F G+++R ++ D A+
Sbjct: 268 CQIAFE--HVGLDYRDFLKIDPAF 289
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.454
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,070,242
Number of extensions: 109113
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 20
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)