RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17097
         (130 letters)



>d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 180

 Score =  181 bits (460), Expect = 3e-60
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 23/152 (15%)

Query: 1   WVEESFTNFEKGINWRSYVVCDVAY-HNVNNWLWTPFIERGNANRIYIEIKFTIRDCALF 59
           W E S  + E+  + R+Y VCDV       +WL T ++ R  A  +Y  ++FT+ +C   
Sbjct: 26  WEELSGLD-EEQHSVRTYEVCDVQRAPGQAHWLRTGWVPRRGAVHVYATLRFTMLECLSL 84

Query: 60  PGNALSCKETFSLLYYEFDA--ATREPPPWEPESYKLI------------------VNIN 99
           P    SCKETF++ YYE DA  AT   P W    Y  +                    +N
Sbjct: 85  PRAGRSCKETFTVFYYESDADTATALTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVN 144

Query: 100 TEVKSI-PVTKKGVYFAFRDQGACISLLAIKV 130
            +   + P++K G Y AF+DQGAC++LL++ +
Sbjct: 145 VKTLRLGPLSKAGFYLAFQDQGACMALLSLHL 176


>d1shwb_ b.18.1.4 (B:) Ligand-binding domain of the ephb2 receptor
           tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 181

 Score =  180 bits (458), Expect = 6e-60
 Identities = 62/151 (41%), Positives = 86/151 (56%), Gaps = 22/151 (14%)

Query: 1   WVEESFTNFEKGINWRSYVVCDVAYHNVNNWLWTPFIERGNANRIYIEIKFTIRDCALFP 60
           W E S  + E     R+Y VC+V   + NNWL T FI R  A+RI++E+KF++RDC+  P
Sbjct: 25  WEEVSGYD-ENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIP 83

Query: 61  GNALSCKETFSLLYYE--FDAATREPPPWEPESYKLI------------------VNINT 100
               SCKETF+L YYE  FD AT+  P W    +  +                  + INT
Sbjct: 84  SVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINT 143

Query: 101 EVKSI-PVTKKGVYFAFRDQGACISLLAIKV 130
           EV+S  PV++ G Y AF+D G C+SL+A++V
Sbjct: 144 EVRSFGPVSRNGFYLAFQDYGGCMSLIAVRV 174


>d2b5id2 g.18.1.1 (D:103-165) Interleukin-2 receptor alpha chain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 27.2 bits (60), Expect = 0.21
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 82 REPPPWEPESYKLIVN 97
          REPPPWE E+ + I +
Sbjct: 3  REPPPWENEATERIYH 18


>d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC
          {Flavobacterium sp. [TaxId: 239]}
          Length = 388

 Score = 24.3 bits (51), Expect = 6.9
 Identities = 4/31 (12%), Positives = 12/31 (38%)

Query: 14 NWRSYVVCDVAYHNVNNWLWTPFIERGNANR 44
          +W+       A+ ++   + +  + R   N 
Sbjct: 21 SWQEPPHNRWAFAHLGEMVPSAAVSRRPVNA 51


>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
          {Escherichia coli [TaxId: 562]}
          Length = 331

 Score = 23.6 bits (50), Expect = 9.9
 Identities = 6/30 (20%), Positives = 12/30 (40%)

Query: 60 PGNALSCKETFSLLYYEFDAATREPPPWEP 89
          PG  +   +   +L+ +F     + P W  
Sbjct: 26 PGAPMGMADIAEVLWRDFLKHNPQNPSWAD 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.454 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,136
Number of extensions: 23391
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 7
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)