BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17098
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 69/131 (52%), Gaps = 22/131 (16%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCPETTINFAHFPTTPTGREVTFIEQATGRCV 84
P+T+KG Y AF+D GAC++LL+++VYY CPE AHFP T G + + G CV
Sbjct: 174 PLTRKGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCV 233
Query: 85 ENA------EEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEK--QTCN---------- 126
++A EE P C DG+W +P G C C+ G+E VE Q C+
Sbjct: 234 DHAVVPPGGEE---PRMHCAVDGEWLVPIGQCLCQAGYE-KVEDACQACSPGFFKFEASE 289
Query: 127 GTCHACPETTI 137
C CPE T+
Sbjct: 290 SPCLECPEHTL 300
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 132 CPETTINFAHFPTTPTGREVTFIEQATGRCVENA------EEVGTPTYLCKGDGKWYLPS 185
CPE AHFP T G + + G CV++A EE P C DG+W +P
Sbjct: 203 CPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEE---PRMHCAVDGEWLVPI 259
Query: 186 GGCKCKPGFE 195
G C C+ G+E
Sbjct: 260 GQCLCQAGYE 269
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 69/131 (52%), Gaps = 22/131 (16%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCPETTINFAHFPTTPTGREVTFIEQATGRCV 84
P+T+KG Y AF+D GAC++LL+++VYY CPE AHFP T G + + G CV
Sbjct: 177 PLTRKGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCV 236
Query: 85 ENA------EEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEK--QTCN---------- 126
++A EE P C DG+W +P G C C+ G+E VE Q C+
Sbjct: 237 DHAVVPPGGEE---PRMHCAVDGEWLVPIGQCLCQAGYEK-VEDACQACSPGFFKFEASE 292
Query: 127 GTCHACPETTI 137
C CPE T+
Sbjct: 293 SPCLECPEHTL 303
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 132 CPETTINFAHFPTTPTGREVTFIEQATGRCVENA------EEVGTPTYLCKGDGKWYLPS 185
CPE AHFP T G + + G CV++A EE P C DG+W +P
Sbjct: 206 CPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEE---PRMHCAVDGEWLVPI 262
Query: 186 GGCKCKPGFE 195
G C C+ G+E
Sbjct: 263 GQCLCQAGYE 272
>pdb|3MX0|A Chain A, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
pdb|3MX0|C Chain C, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
Length = 409
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 69/131 (52%), Gaps = 22/131 (16%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCPETTINFAHFPTTPTGREVTFIEQATGRCV 84
P+T+KG Y AF+D GAC++LL+++VYY CPE AHFP T G + + G CV
Sbjct: 146 PLTRKGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCV 205
Query: 85 ENA------EEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEK--QTCN---------- 126
++A EE P C DG+W +P G C C+ G+E VE Q C+
Sbjct: 206 DHAVVPPGGEE---PRMHCAVDGEWLVPIGQCLCQAGYE-KVEDACQACSPGFFKFEASE 261
Query: 127 GTCHACPETTI 137
C CPE T+
Sbjct: 262 SPCLECPEHTL 272
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 132 CPETTINFAHFPTTPTGREVTFIEQATGRCVENA------EEVGTPTYLCKGDGKWYLPS 185
CPE AHFP T G + + G CV++A EE P C DG+W +P
Sbjct: 175 CPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEE---PRMHCAVDGEWLVPI 231
Query: 186 GGCKCKPGFE 195
G C C+ G+E
Sbjct: 232 GQCLCQAGYE 241
>pdb|3MBW|A Chain A, Crystal Structure Of The Human Ephrin A2 Lbd And Crd
Domains In Complex With Ephrin A1
Length = 330
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 69/131 (52%), Gaps = 22/131 (16%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCPETTINFAHFPTTPTGREVTFIEQATGRCV 84
P+T+KG Y AF+D GAC++LL+++VYY CPE AHFP T G + + G CV
Sbjct: 176 PLTRKGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCV 235
Query: 85 ENA------EEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEK--QTCN---------- 126
++A EE P C DG+W +P G C C+ G+E VE Q C+
Sbjct: 236 DHAVVPPGGEE---PRMHCAVDGEWLVPIGQCLCQAGYEK-VEDACQACSPGFFKFEASE 291
Query: 127 GTCHACPETTI 137
C CPE T+
Sbjct: 292 SPCLECPEHTL 302
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 132 CPETTINFAHFPTTPTGREVTFIEQATGRCVENA------EEVGTPTYLCKGDGKWYLPS 185
CPE AHFP T G + + G CV++A EE P C DG+W +P
Sbjct: 205 CPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEE---PRMHCAVDGEWLVPI 261
Query: 186 GGCKCKPGFE 195
G C C+ G+E
Sbjct: 262 GQCLCQAGYE 271
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 69/131 (52%), Gaps = 22/131 (16%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCPETTINFAHFPTTPTGREVTFIEQATGRCV 84
P+T+KG Y AF+D GAC++LL+++VYY CPE AHFP T G + + G CV
Sbjct: 174 PLTRKGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCV 233
Query: 85 ENA------EEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEK--QTCN---------- 126
++A EE P C DG+W +P G C C+ G+E VE Q C+
Sbjct: 234 DHAVVPPGGEE---PRXHCAVDGEWLVPIGQCLCQAGYE-KVEDACQACSPGFFKFEASE 289
Query: 127 GTCHACPETTI 137
C CPE T+
Sbjct: 290 SPCLECPEHTL 300
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 132 CPETTINFAHFPTTPTGREVTFIEQATGRCVENA------EEVGTPTYLCKGDGKWYLPS 185
CPE AHFP T G + + G CV++A EE P C DG+W +P
Sbjct: 203 CPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEE---PRXHCAVDGEWLVPI 259
Query: 186 GGCKCKPGFE 195
G C C+ G+E
Sbjct: 260 GQCLCQAGYE 269
>pdb|3C8X|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ephrin A2 (Epha2) Receptor Protein Kinase
pdb|3SKJ|E Chain E, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
pdb|3SKJ|F Chain F, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
Length = 206
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCP 55
P+T+KG Y AF+D GAC++LL+++VYY CP
Sbjct: 176 PLTRKGFYLAFQDIGACVALLSVRVYYKKCP 206
>pdb|3CZU|A Chain A, Crystal Structure Of The Human Ephrin A2- Ephrin A1
Complex
Length = 207
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCP 55
P+T+KG Y AF+D GAC++LL+++VYY CP
Sbjct: 177 PLTRKGFYLAFQDIGACVALLSVRVYYKKCP 207
>pdb|3HEI|A Chain A, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|C Chain C, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|E Chain E, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|G Chain G, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|I Chain I, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|K Chain K, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|M Chain M, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|O Chain O, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|A Chain A, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|B Chain B, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|C Chain C, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|D Chain D, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|E Chain E, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HPN|F Chain F, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
Length = 174
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 25/30 (83%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITC 54
P+T+KG Y AF+D GAC++LL+++VYY C
Sbjct: 145 PLTRKGFYLAFQDIGACVALLSVRVYYKKC 174
>pdb|1KGY|A Chain A, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|B Chain B, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|C Chain C, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|D Chain D, Crystal Structure Of The Ephb2-Ephrinb2 Complex
Length = 181
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCPE 56
PV++ G Y AF+D G C+SL+A++V+Y CP
Sbjct: 150 PVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR 181
>pdb|1SHW|B Chain B, Ephb2 EPHRINA5 COMPLEX STRUCTURE
Length = 181
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCPE 56
PV++ G Y AF+D G C+SL+A++V+Y CP
Sbjct: 150 PVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR 181
>pdb|1NUK|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Ephb2 Receptor Tyrosine Kinase
Length = 183
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCPE 56
PV++ G Y AF+D G C+SL+A++V+Y CP
Sbjct: 149 PVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR 180
>pdb|3ETP|A Chain A, The Crystal Structure Of The Ligand-Binding Domain Of The
Ephb2 Receptor At 2.0 A Resolution
Length = 187
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCPE 56
PV++ G Y AF+D G C+SL+A++V+Y CP
Sbjct: 156 PVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR 187
>pdb|3NRU|A Chain A, Ligand Binding Domain Of Epha7
pdb|3NRU|B Chain B, Ligand Binding Domain Of Epha7
pdb|3NRU|C Chain C, Ligand Binding Domain Of Epha7
pdb|3NRU|D Chain D, Ligand Binding Domain Of Epha7
pdb|3NRU|E Chain E, Ligand Binding Domain Of Epha7
pdb|3NRU|F Chain F, Ligand Binding Domain Of Epha7
pdb|3NRU|G Chain G, Ligand Binding Domain Of Epha7
pdb|3NRU|H Chain H, Ligand Binding Domain Of Epha7
pdb|3NRU|I Chain I, Ligand Binding Domain Of Epha7
pdb|3NRU|J Chain J, Ligand Binding Domain Of Epha7
pdb|3NRU|K Chain K, Ligand Binding Domain Of Epha7
pdb|3NRU|L Chain L, Ligand Binding Domain Of Epha7
Length = 187
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 24/27 (88%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYY 51
P++KKG Y AF+D GACI+L+++KVYY
Sbjct: 147 PLSKKGFYLAFQDVGACIALVSVKVYY 173
>pdb|3CKH|A Chain A, Crystal Structure Of Eph A4 Receptor
pdb|3CKH|B Chain B, Crystal Structure Of Eph A4 Receptor
Length = 181
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYYITCPETT 58
P++KKG Y AF+D GACI+L++++V+Y P T
Sbjct: 147 PLSKKGFYLAFQDVGACIALVSVRVFYKKAPLTV 180
>pdb|2WO1|A Chain A, Crystal Structure Of The Epha4 Ligand Binding Domain
pdb|2WO1|B Chain B, Crystal Structure Of The Epha4 Ligand Binding Domain
pdb|2WO2|A Chain A, Crystal Structure Of The Epha4-Ephrinb2 Complex
pdb|2WO3|A Chain A, Crystal Structure Of The Epha4-Ephrina2 Complex
Length = 185
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 24/27 (88%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYY 51
P++KKG Y AF+D GACI+L++++V+Y
Sbjct: 149 PLSKKGFYLAFQDVGACIALVSVRVFY 175
>pdb|3GXU|A Chain A, Crystal Structure Of Eph Receptor And Ephrin Complex
Length = 175
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 24/27 (88%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYY 51
P++KKG Y AF+D GACI+L++++V+Y
Sbjct: 147 PLSKKGFYLAFQDVGACIALVSVRVFY 173
>pdb|3P1I|A Chain A, Ligand Binding Domain Of Human Ephrin Type-B Receptor 3
pdb|3P1I|B Chain B, Ligand Binding Domain Of Human Ephrin Type-B Receptor 3
pdb|3P1I|C Chain C, Ligand Binding Domain Of Human Ephrin Type-B Receptor 3
Length = 200
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 23/27 (85%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYY 51
P++K G Y AF+DQGAC+SL++++ +Y
Sbjct: 172 PLSKAGFYLAFQDQGACMSLISVRAFY 198
>pdb|2HLE|A Chain A, Structural And Biophysical Characterization Of The
Ephb4-ephrinb2 Protein Protein Interaction And Receptor
Specificity
Length = 188
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 23/27 (85%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYY 51
P++K G Y AF+DQGAC++LL++ ++Y
Sbjct: 160 PLSKAGFYLAFQDQGACMALLSLHLFY 186
>pdb|2BBA|A Chain A, Crystal Structure And Thermodynamic Characterization Of
The Ephb4 Receptor In Complex With An Ephrin-B2
Antagonist Peptide Reveals The Determinants For Receptor
Specificity
Length = 185
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 23/27 (85%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYY 51
P++K G Y AF+DQGAC++LL++ ++Y
Sbjct: 157 PLSKAGFYLAFQDQGACMALLSLHLFY 183
>pdb|2QBX|A Chain A, Ephb2SNEW ANTAGONISTIC PEPTIDE COMPLEX
pdb|2QBX|B Chain B, Ephb2SNEW ANTAGONISTIC PEPTIDE COMPLEX
Length = 208
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 25 PVTKKGVYFAFRDQGACISLLAIKVYY 51
PV++ G Y AF+D G C+SL+A++V+Y
Sbjct: 180 PVSRSGFYLAFQDYGGCMSLIAVRVFY 206
>pdb|3ERB|A Chain A, The Crystal Structure Of C2b, A Fragment Of Complement
Component C2 Produced During C3-Convertase Formation
Length = 223
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 50/152 (32%), Gaps = 29/152 (19%)
Query: 35 FRDQGACISLLAIKVYYITCP-----ETTINFAHFPTTPTGREVTFIEQATGRCVENAEE 89
++ GA SL + CP E I + P G V+F C +
Sbjct: 50 WQTPGATRSLSKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSF------ECEDGFIL 103
Query: 90 VGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEKQTCNGTCHACPETTINFAHFPTTPTGR 149
G+P C+ +G W D E C+ CP I+ TG
Sbjct: 104 RGSPVRQCRPNGMW---------------DGETAVCDNGAGHCPNPGISLG---AVRTGF 145
Query: 150 EVTFIEQATGRCVENAEEVGTPTYLCKGDGKW 181
++ RC N G+ C+G+G W
Sbjct: 146 RFGHGDKVRYRCSSNLVLTGSSERECQGNGVW 177
>pdb|2GSX|A Chain A, Complement Receptor Type 2
Length = 951
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 57 TTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGT---PTYLCK 98
TT+ + P G E + I ++T RC N +E GT P LCK
Sbjct: 530 TTVTYTCNPGPERGVEFSLIGESTIRCTSNDQERGTWSGPAPLCK 574
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 135 TTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGT---PTYLCK 176
TT+ + P G E + I ++T RC N +E GT P LCK
Sbjct: 530 TTVTYTCNPGPERGVEFSLIGESTIRCTSNDQERGTWSGPAPLCK 574
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,753,163
Number of Sequences: 62578
Number of extensions: 300169
Number of successful extensions: 542
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 45
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)