RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17098
(204 letters)
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 131 bits (331), Expect = 3e-36
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 12/172 (6%)
Query: 1 RIAAGEGRFNTN---TEVNINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKVYYITCPE 56
IA E +++ V +N E +S+ P+T+KG Y AF+D GAC++LL+++VYY CPE
Sbjct: 149 TIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIGACVALLSVRVYYKKCPE 208
Query: 57 TTINFAHFPTTPTGREVTFIEQATGRCVENA---EEVGTPTYLCKGDGKWYLPSGGCKCK 113
AHFP T G + + G CV++A P C DG+W +P G C C+
Sbjct: 209 LLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQ 268
Query: 114 PGFEADVEKQTCNGT-----CHACPETTINFAHFPTTPTGREVTFIEQATGR 160
G+E + + H +P G E+ R
Sbjct: 269 AGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFR 320
Score = 78.7 bits (193), Expect = 2e-17
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 132 CPETTINFAHFPTTPTGREVTFIEQATGRCVENA---EEVGTPTYLCKGDGKWYLPSGGC 188
CPE AHFP T G + + G CV++A P C DG+W +P G C
Sbjct: 206 CPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQC 265
Query: 189 KCKPGFEADVEKQTCN 204
C+ G+E +
Sbjct: 266 LCQAGYEKVEDACQAC 281
>2qbx_A Ephrin type-B receptor 2; receptor tyrosine kinase, BI-directional
signaling, tumorigenesis, angiogenesis, signaling
protein, structural genomics; 2.30A {Homo sapiens}
Length = 208
Score = 70.8 bits (173), Expect = 2e-15
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 1 RIAAGEGRFNTNT---EVNINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKVYY 51
IAA E + + INTEV+S PV++ G Y AF+D G C+SL+A++V+Y
Sbjct: 152 TIAADESFSQVDLGGRVMKINTEVRSFGPVSRSGFYLAFQDYGGCMSLIAVRVFY 206
>2wo1_A Ephrin type-A receptor; glycoprotein, AXON guidance, vascular
development, cell SURF receptor, transferase, cell
signaling; 1.85A {Homo sapiens} PDB: 2wo2_A* 2wo3_A*
3ckh_A 3gxu_A 3nru_A
Length = 185
Score = 69.3 bits (169), Expect = 5e-15
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 1 RIAAGEGRFNTNTE---VNINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKVYYITCPE 56
IAA E + + +NTE++ + P++KKG Y AF+D GACI+L++++V+Y
Sbjct: 121 TIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYKRTKH 180
Query: 57 TTIN 60
+
Sbjct: 181 HHHH 184
>3etp_A Ephrin type-B receptor 2; EPH receptor, tyrosine kinase,
alternative splicing, ATP- binding, glycoprotein,
kinase, membrane, nucleotide- binding; 2.00A {Mus
musculus} PDB: 1nuk_A 1kgy_A 1shw_B*
Length = 187
Score = 68.2 bits (166), Expect = 1e-14
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 1 RIAAGEGRFNTNT---EVNINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKVYYITCPE 56
IAA E + + INTEV+S PV++ G Y AF+D G C+SL+A++V+Y CP
Sbjct: 128 TIAADESISQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR 187
>3c8x_A Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase, glycoprotein; 1.95A {Homo
sapiens} PDB: 3skj_E 3czu_A* 3hei_A 3hpn_A
Length = 206
Score = 67.1 bits (163), Expect = 4e-14
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%)
Query: 1 RIAAGEGRFNTN---TEVNINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKVYYITCP 55
IA E +++ V +N E +S+ P+T+KG Y AF+D GAC++LL+++VYY CP
Sbjct: 148 TIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIGACVALLSVRVYYKKCP 206
>2bba_A Ephrin type-B receptor 4; EPHB4, tumorigenesis, angiogenesis,
peptide mimetics, signal protein, structural genomics,
PSI-2; 1.65A {Homo sapiens} SCOP: b.18.1.4 PDB: 2hle_A
Length = 185
Score = 64.4 bits (156), Expect = 3e-13
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 1 RIAAGE---GRFNTNTEVNINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKVYY 51
+AA R +N + + P++K G Y AF+DQGAC++LL++ ++Y
Sbjct: 129 TVAAEHLTRKRPGAEATGKVNVKTLRLGPLSKAGFYLAFQDQGACMALLSLHLFY 183
>3p1i_A Ephrin type-B receptor 3; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase, glycoprotein; 2.10A {Homo
sapiens}
Length = 200
Score = 64.0 bits (155), Expect = 6e-13
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 1 RIAAGEGRFNTNTEVNINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKVYY 51
IA E F+ +NT+V+S P++K G Y AF+DQGAC+SL++++ +Y
Sbjct: 148 TIAPDE-SFSRLDAGRVNTKVRSFGPLSKAGFYLAFQDQGACMSLISVRAFY 198
>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes GPS
motif, autoproteolytic fold, extra signaling protein;
HET: NAG FUL; 2.30A {Homo sapiens}
Length = 382
Score = 35.2 bits (79), Expect = 0.011
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 12/76 (15%)
Query: 118 ADVEKQTCNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKG 177
+Q C CPE + + TP G + A +C NA GT + C
Sbjct: 6 RRCSEQRCPAPYEICPEDYLMSMVWKRTPAG------DLAFNQCPLNA--TGTTSRRCSL 57
Query: 178 D----GKWYLPSGGCK 189
W PS
Sbjct: 58 SLHGVAFWEQPSFARC 73
Score = 30.2 bits (66), Expect = 0.41
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 12/63 (19%)
Query: 53 TCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGD----GKWYLPSG 108
CPE + + TP G + A +C NA GT + C W PS
Sbjct: 19 ICPEDYLMSMVWKRTPAG------DLAFNQCPLNA--TGTTSRRCSLSLHGVAFWEQPSF 70
Query: 109 GCK 111
Sbjct: 71 ARC 73
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 34.7 bits (79), Expect = 0.015
Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 21/133 (15%)
Query: 53 TCPETTINFAH--FPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGC 110
+C + F G+ + ++ C T C+ G W
Sbjct: 11 SCSLEGVEIKGGSFRLLQEGQALEYV------CPSGFYPYPVQTRTCRSTGSWS------ 58
Query: 111 KCKPGFEADVEKQTCNGTCHA--CPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEV 168
+ +K C A CP +F + P ++ + C +
Sbjct: 59 ----TLKTQDQKTVRKAECRAIHCPRPH-DFENGEYWPRSPYYNVSDEISFHCYDGYTLR 113
Query: 169 GTPTYLCKGDGKW 181
G+ C+ +G+W
Sbjct: 114 GSANRTCQVNGRW 126
Score = 29.7 bits (66), Expect = 0.66
Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 29/135 (21%)
Query: 52 ITCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGCK 111
I CP +F + P ++ + C + G+ C+ +G+W SG
Sbjct: 76 IHCPRPH-DFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRW---SG--- 128
Query: 112 CKPGFEADVEKQTCNGTCHACPETTINFAHFPTTP-----TGREVTFIEQATGRCVENAE 166
+ C+ C P P G + + T C
Sbjct: 129 ---------QTAICDNGAGYCSN--------PGIPIGTRKVGSQYRLEDSVTYHCSRGLT 171
Query: 167 EVGTPTYLCKGDGKW 181
G+ C+ G W
Sbjct: 172 LRGSQRRTCQEGGSW 186
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 33.6 bits (76), Expect = 0.039
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 48 KVYYITCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPS 107
K+ T A V + R A++ G +++C G +
Sbjct: 544 KIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGD---GT 600
Query: 108 GGCKCKPGFEADVEKQTCNGTCHAC 132
C C ++ +C GT H
Sbjct: 601 TRCSCPMHLVLLQDELSCGGTKHHH 625
Score = 26.3 bits (57), Expect = 9.6
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 161 CVENAEEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEKQTC 203
A++ G +++C G + C C ++ +C
Sbjct: 579 QHPCAQDNGGCSHICLVKGD---GTTRCSCPMHLVLLQDELSC 618
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 31.6 bits (71), Expect = 0.16
Identities = 12/81 (14%), Positives = 18/81 (22%), Gaps = 2/81 (2%)
Query: 125 CNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLC--KGDGKWY 182
N + P + C G YLC +
Sbjct: 234 ANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPH 293
Query: 183 LPSGGCKCKPGFEADVEKQTC 203
P C C G + ++C
Sbjct: 294 SPKFTCACPDGMLLARDMRSC 314
Score = 31.2 bits (70), Expect = 0.21
Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 5/123 (4%)
Query: 5 GEGRFNTNTEVNINTEVKSIPVTKKGVYFAFRDQGACISLLAIKVYYITCPETTINFAHF 64
G R + S+ V + V++ ++ + +
Sbjct: 195 GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE---AIFSANRLTGSDVNLLAENLLS 251
Query: 65 PTTPTGREVTFIEQATGRCVENAEEVGTPTYLC--KGDGKWYLPSGGCKCKPGFEADVEK 122
P + C G YLC + P C C G +
Sbjct: 252 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 311
Query: 123 QTC 125
++C
Sbjct: 312 RSC 314
>2xrb_A Complement regulatory protein CRRY; immune system, immunology;
2.50A {Rattus norvegicus} PDB: 2xrd_A
Length = 290
Score = 31.5 bits (71), Expect = 0.17
Identities = 14/107 (13%), Positives = 22/107 (20%), Gaps = 14/107 (13%)
Query: 83 CVENAEEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEKQTCNGTCHACPETTINFAHF 142
+ VG C+G + + G C A P +A
Sbjct: 3 ASSPLDPVGRLVAFCRGGVHLAVLLLFLSP-----------STLGQCPAPP--LFPYAKP 49
Query: 143 PTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGCK 189
C + C+ + W P C
Sbjct: 50 INPTDESTFPVGTSLKYECRPGY-IKRQFSITCEVNSVWTSPQDVCI 95
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 30.5 bits (69), Expect = 0.38
Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 21/166 (12%)
Query: 48 KVYY----ITCPETTINFAHFPTTPTGREVTFIEQATGRC------VENAEEVGTPTYLC 97
K++Y CP + + +P + + + C ++ + + T +C
Sbjct: 7 KIHYTSTAHACPYP-MAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVC 65
Query: 98 KGDGKWYLPSGGCK---CKPGFE---ADVEKQTCNGTCHACPETTINFAHFPTTPTGREV 151
+ DG W P C C P + VE T G + T +
Sbjct: 66 QKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDG 125
Query: 152 TFIEQATGRCVENAEEVGTPTYLCK-GDGKWYLPS---GGCKCKPG 193
++ +A G + E P G GG K KPG
Sbjct: 126 KYVCEADGFWTSSKGEKSLPVCEPVCGLSARTTGGQIYGGQKAKPG 171
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 30.5 bits (68), Expect = 0.40
Identities = 24/139 (17%), Positives = 36/139 (25%), Gaps = 15/139 (10%)
Query: 51 YITCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGC 110
CP + + T + + C G+ C D W C
Sbjct: 765 VTRCPNPEVKHGYK-LNKTHSAYSHNDIVYVDCNPGFIMNGSRVIRCHTDNTWVPGVPTC 823
Query: 111 KCKPGFEADVEKQTCNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGT 170
K +T NG + G + + C + VG
Sbjct: 824 IKKAFIGCPPPPKTPNG--------NHTGGNIARFSPGMSILY------SCDQGYLLVGE 869
Query: 171 PTYLCKGDGKWYLPSGGCK 189
LC +G W P+ CK
Sbjct: 870 ALLLCTHEGTWSQPAPHCK 888
Score = 30.1 bits (67), Expect = 0.51
Identities = 23/141 (16%), Positives = 38/141 (26%), Gaps = 19/141 (13%)
Query: 52 ITCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGCK 111
+ CP I + T+ + C+ G+ C G W + C+
Sbjct: 329 VQCPHPQI-LRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQIRCNAQGTWEPSAPVCE 387
Query: 112 CKPGFEADVEKQTCNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTP 171
+ ++ NG H G + + C VG
Sbjct: 388 KECQAPPNIL----NG--------QKEDRHMVRFDPGTSIKY------SCNPGYVLVGEE 429
Query: 172 TYLCKGDGKWYLPSGGCKCKP 192
+ C +G W P CK
Sbjct: 430 SIQCTSEGVWTPPVPQCKVAA 450
Score = 27.4 bits (60), Expect = 4.2
Identities = 20/144 (13%), Positives = 35/144 (24%), Gaps = 26/144 (18%)
Query: 51 YITCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGC 110
+ C I + + + + T +C G+ CK D W C
Sbjct: 579 AVQCSHVHI-ANGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQIRCKADNTWDPEIPVC 637
Query: 111 KCKPGFEADVEKQTCNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGT 170
+ + C + P V C + + G
Sbjct: 638 EKET-----------------CQHVRQSLQELPAGSRVELVNT------SCQDGYQLTGH 674
Query: 171 PTYLC--KGDGKWYLPSGGCKCKP 192
+C +G W+ CK
Sbjct: 675 AYQMCQDAENGIWFKKIPLCKVIH 698
Score = 26.6 bits (58), Expect = 7.2
Identities = 24/145 (16%), Positives = 38/145 (26%), Gaps = 22/145 (15%)
Query: 52 ITCPE-TTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLC----KGDGKWYLP 106
I+C I + + C +G + LC K DG W P
Sbjct: 1 ISCGSPPPILNGRI--SYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP 58
Query: 107 SGGCKCKPGFEADVEKQTCNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAE 166
+ C+ K + CPE + + T + T C N
Sbjct: 59 APKCEY-------FNKYSS------CPEPIVPGGYKIRGST--PYRHGDSVTFACKTNFS 103
Query: 167 EVGTPTYLCKGDGKWYLPSGGCKCK 191
G + C+ + W
Sbjct: 104 MNGNKSVWCQANNMWGPTRLPTCVS 128
Score = 26.6 bits (58), Expect = 8.0
Identities = 21/126 (16%), Positives = 33/126 (26%), Gaps = 17/126 (13%)
Query: 66 TTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEKQTC 125
T + C + VG LC +G W P+ CK
Sbjct: 843 TGGNIARFSPGMSILYSCDQGYLLVGEALLLCTHEGTWSQPAPHCKEVN----------- 891
Query: 126 NGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPS 185
C + + T C + G+P C+ D +W P
Sbjct: 892 ------CSSPADMDGIQKGLEPRKMYQYGAVVTLECEDGYMLEGSPQSQCQSDHQWNPPL 945
Query: 186 GGCKCK 191
C+ +
Sbjct: 946 AVCRSR 951
Score = 26.6 bits (58), Expect = 8.2
Identities = 24/140 (17%), Positives = 35/140 (25%), Gaps = 21/140 (15%)
Query: 53 TCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGCKC 112
+CPE + + T + T C N G + C+ + W
Sbjct: 70 SCPEPIVPGGYKIRGST--PYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTCV 127
Query: 113 KPGFEADVEKQTCNGTCHACPE---TTINFAHFPTTPTGREVTFIEQATGRCVENAEEVG 169
C A P + + G VT+ C VG
Sbjct: 128 S----------VFPLECPALPMIHNGHHTSENVGSIAPGLSVTY------SCESGYLLVG 171
Query: 170 TPTYLCKGDGKWYLPSGGCK 189
C GKW C+
Sbjct: 172 EKIINCLSSGKWSAVPPTCE 191
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 30.5 bits (68), Expect = 0.40
Identities = 21/140 (15%), Positives = 33/140 (23%), Gaps = 18/140 (12%)
Query: 52 ITCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGCK 111
+ E RC VG+ T C+ +G+W C
Sbjct: 1547 TNKCTAPEVENAIRVPGNRSFFSLTEIIRFRCQPGFVMVGSHTVQCQTNGRWGPKLPHCS 1606
Query: 112 CKPGFEADVEKQTCNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTP 171
+H G+EV + C + + G
Sbjct: 1607 R------------VCQPPPEILHGEHTLSHQDNFSPGQEVFY------SCEPSYDLRGAA 1648
Query: 172 TYLCKGDGKWYLPSGGCKCK 191
+ C G W + C K
Sbjct: 1649 SLHCTPQGDWSPEAPRCTVK 1668
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 29.2 bits (65), Expect = 1.1
Identities = 18/116 (15%), Positives = 28/116 (24%), Gaps = 16/116 (13%)
Query: 66 TTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEKQTC 125
+ + + RC G + C+ KW C K
Sbjct: 210 LSENRSLFSLRDIVEFRCHPGFIMKGASSVHCQSLNKWEPELPSC----------FKGVI 259
Query: 126 NGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKW 181
C +E + E T C + G+ C+ DG W
Sbjct: 260 ------CRLPQEMSGFQKGLGMKKEYYYGENVTLECEDGYTLEGSSQSQCQSDGSW 309
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 28.1 bits (62), Expect = 2.0
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 5/98 (5%)
Query: 97 CKGDGKWYLPSGGCKCKPGFEADVEKQTCNGTCHACPETTINFAHFPTTPTGREVTFIEQ 156
C + G C D + CP+ F P G + + I Q
Sbjct: 374 CLNNEVI---PGLKSCMGLKIGDTVSFSIEAKVRGCPQE--KEKSFTIKPVGFKDSLIVQ 428
Query: 157 ATGRCVENAEEVGTPTYLCKGDGKWYLPSGGCKCKPGF 194
T C + P +G G C+C PG+
Sbjct: 429 VTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGW 466
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 27.3 bits (59), Expect = 3.0
Identities = 15/121 (12%), Positives = 24/121 (19%), Gaps = 8/121 (6%)
Query: 91 GTPTYLCKGDGKWYLPSGGCKCKPGFEADVEKQTCN-------GTCHACPETTINFAHFP 143
G + + C C G+ + + G C ++
Sbjct: 57 GEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSA 116
Query: 144 TTPTGREVTFIEQATGRCVENAE-EVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEKQT 202
+ C E C+C GF D E
Sbjct: 117 GCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNV 176
Query: 203 C 203
C
Sbjct: 177 C 177
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 27.5 bits (60), Expect = 3.1
Identities = 12/83 (14%), Positives = 19/83 (22%), Gaps = 2/83 (2%)
Query: 123 QTCNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLC--KGDGK 180
+ N + P + C G YLC
Sbjct: 314 FSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQIN 373
Query: 181 WYLPSGGCKCKPGFEADVEKQTC 203
+ P C C G + ++C
Sbjct: 374 PHSPKFTCACPDGMLLARDMRSC 396
Score = 27.1 bits (59), Expect = 5.1
Identities = 11/75 (14%), Positives = 17/75 (22%), Gaps = 2/75 (2%)
Query: 53 TCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLC--KGDGKWYLPSGGC 110
+ P + C G YLC + P C
Sbjct: 322 SDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTC 381
Query: 111 KCKPGFEADVEKQTC 125
C G + ++C
Sbjct: 382 ACPDGMLLARDMRSC 396
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 27.5 bits (60), Expect = 3.2
Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 6/96 (6%)
Query: 99 GDGKWYLPSGGCKCKPGFEADVEKQTCNGTCHACPETTINFAHFPTTPTGREVTFIEQAT 158
+G + C T C + F G Q
Sbjct: 126 SNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQ----SFVIRALGFTDIVTVQVL 181
Query: 159 GRCVENAEEVGTPTYLCKGDGKWYLPSGGCKCKPGF 194
+C + LC G G G C+C G+
Sbjct: 182 PQCECRCRDQSRDRSLCHGKGFLE--CGICRCDTGY 215
Score = 26.4 bits (57), Expect = 6.8
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
Query: 47 IKVYYITCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLP 106
+KV C + F G Q +C + LC G G
Sbjct: 152 VKVTATECIQEQ----SFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLE-- 205
Query: 107 SGGCKCKPGFEADVEKQTCNGTCHACPETT 136
G C+C G+ + G E +
Sbjct: 206 CGICRCDTGYIGKNCECQTQGRSSQELEGS 235
>2qy0_A Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
Length = 159
Score = 27.0 bits (59), Expect = 3.6
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 18/118 (15%)
Query: 82 RCVENAEEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEKQTCNGTCHACPETTINFAH 141
+ +E + + + T +C+ DG W+ CK K + NG +
Sbjct: 39 QLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLP---NG--------DFRYTT 87
Query: 142 FPTTPTGREVTFIEQATG----RCVENAEEVGTPTYLCKGDGKWYLPSGGCK---CKP 192
T + + + E Y C G W G K C P
Sbjct: 88 TMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLP 145
>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat,
sushi, complement control protein, N glycosylation,
multi-domain, membrane adhesion; HET: NAG MAN; 2.70A
{Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1
g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A
Length = 319
Score = 27.2 bits (60), Expect = 3.7
Identities = 19/119 (15%), Positives = 27/119 (22%), Gaps = 20/119 (16%)
Query: 63 HFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEK 122
+ T ++F C G + C +GKW C
Sbjct: 77 RYTTFEYPNTISF------SCNTGFYLNGADSAKCTEEGKWSPELPVCAPI--------- 121
Query: 123 QTCNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKW 181
C T G + + A C+ G T C G W
Sbjct: 122 -----ICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNW 175
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 27.4 bits (61), Expect = 3.9
Identities = 7/37 (18%), Positives = 9/37 (24%), Gaps = 3/37 (8%)
Query: 104 YLPSGGCK--CKPGFE-ADVEKQTCNGTCHACPETTI 137
+P+ C C P C C C
Sbjct: 479 SVPTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEY 515
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 27.5 bits (60), Expect = 3.9
Identities = 22/129 (17%), Positives = 28/129 (21%), Gaps = 20/129 (15%)
Query: 66 TTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGCKCKPGFEADVEKQTC 125
+ E C+ E VG + C DG W C+
Sbjct: 634 IRNEKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQGDVECQ-------------- 679
Query: 126 NGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPS 185
C TP R E C + G Y C W P
Sbjct: 680 RTECIKPVVQE----VLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTC-QGNSWTPPI 734
Query: 186 GGC-KCKPG 193
C+
Sbjct: 735 SNSLTCEKD 743
>2wii_C H factor 1, complement factor H; immune system, sushi, secreted,
polymorphism, glycoprotein, complement system,
complement pathway, immune response; HET: NAG BMA; 2.70A
{Homo sapiens} PDB: 2rlp_A 2rlq_A
Length = 277
Score = 27.2 bits (60), Expect = 4.1
Identities = 23/139 (16%), Positives = 30/139 (21%), Gaps = 16/139 (11%)
Query: 52 ITCPE-TTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGC 110
C F F T G + +A C E + +G Y W C
Sbjct: 70 RPCGHPGDTPFGTF-TLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPIC 128
Query: 111 KCKPGFEADVEKQTCNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGT 170
+ C RE F + C + G
Sbjct: 129 EVV--------------KCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGD 174
Query: 171 PTYLCKGDGKWYLPSGGCK 189
C DG W C
Sbjct: 175 EEMHCSDDGFWSKEKPKCV 193
>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding
domain, autoproteolysis, A-latrotoxin, extracellular
domain; HET: NAG; 1.85A {Rattus norvegicus}
Length = 381
Score = 27.3 bits (58), Expect = 4.4
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 10/79 (12%)
Query: 53 TCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGG--C 110
C + +P T G C + G ++ C + P G
Sbjct: 23 FCEPREVRRVQWPATQQG------MLVERPCPKGTR--GIASFQCLPALGLWNPRGPDLS 74
Query: 111 KCKPGFEADVEKQTCNGTC 129
C + V ++ +G
Sbjct: 75 NCTSPWVNQVAQKIKSGEN 93
>3gov_A MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_A
Length = 155
Score = 26.5 bits (58), Expect = 5.4
Identities = 25/154 (16%), Positives = 37/154 (24%), Gaps = 31/154 (20%)
Query: 52 ITCPE-TTINFAHFPTTPTGREVTFIEQATGRC------VENAEEVGTPTYLCKGDGKWY 104
CPE P+ + F +Q C +++ E+ T C DG W
Sbjct: 6 NECPELQPPVHGKI--EPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTW- 62
Query: 105 LPSGGCKCKPGFEADVEKQTCNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVEN 164
+ C + + T+ + C E
Sbjct: 63 ---------SNKIPTCKIVDC------RAPGELEHGLITFSTRNNLTTYKSEIKYSCQEP 107
Query: 165 ---AEEVGTPTYLCKGDGKWYLPSGGCK---CKP 192
T Y C G W G C P
Sbjct: 108 YYKMLNNNTGIYTCSAQGVWMNKVLGRSLPTCLP 141
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 26.2 bits (57), Expect = 9.4
Identities = 29/160 (18%), Positives = 44/160 (27%), Gaps = 24/160 (15%)
Query: 54 CPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKWYLPSGGCKCK 113
I F G Q +C + LC G G G C+C
Sbjct: 394 TATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLE--CGICRCD 451
Query: 114 PGFEADVEKQTCNGTCHACPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTY 173
G+ + G E + + +G G+C+ + +V
Sbjct: 452 TGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC----VCGQCLCHTSDVPGKLI 507
Query: 174 ------------------LCKGDGKWYLPSGGCKCKPGFE 195
+C G G+ G C+C PGFE
Sbjct: 508 YGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFE 547
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.442
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,191,114
Number of extensions: 189514
Number of successful extensions: 818
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 193
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)