RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17098
         (204 letters)



>d1shwb_ b.18.1.4 (B:) Ligand-binding domain of the ephb2 receptor
           tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 181

 Score = 81.0 bits (200), Expect = 5e-20
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 1   RIAAGEGRFNTNT---EVNINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKVYYITCPE 56
            IAA E     +     + INTEV+S  PV++ G Y AF+D G C+SL+A++V+Y  CP 
Sbjct: 122 TIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR 181


>d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 180

 Score = 72.5 bits (178), Expect = 7e-17
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 1   RIAAGE-GRFNTNTEV--NINTEVKSI-PVTKKGVYFAFRDQGACISLLAIKVYY 51
            +AA    R     E    +N +   + P++K G Y AF+DQGAC++LL++ ++Y
Sbjct: 124 TVAAEHLTRKRPGAEATGKVNVKTLRLGPLSKAGFYLAFQDQGACMALLSLHLFY 178


>d1g40a4 g.18.1.1 (A:185-243) Complement control protein {Vaccinia
           virus [TaxId: 10245]}
          Length = 59

 Score = 26.8 bits (59), Expect = 0.35
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 52  ITCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKW 103
           + CP  TI+  +  ++   R  ++ +    +C    +  G+ +  C     W
Sbjct: 1   VKCPHPTISNGYL-SSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTW 51



 Score = 24.5 bits (53), Expect = 2.3
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 132 CPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKW 181
           CP  TI+  +  ++   R  ++ +    +C    +  G+ +  C     W
Sbjct: 3   CPHPTISNGYL-SSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTW 51


>d1ly2a2 g.18.1.1 (A:67-129) Complement receptor 2, cr2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 63

 Score = 24.9 bits (54), Expect = 2.1
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 51  YITCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKW 103
           Y +CPE  +   +             +  T  C  N    G  +  C+ +  W
Sbjct: 2   YSSCPEPIVPGGYK--IRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMW 52


>d1quba4 g.18.1.1 (A:184-243) beta2-glycoprotein I {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 60

 Score = 23.7 bits (51), Expect = 5.8
 Identities = 11/52 (21%), Positives = 18/52 (34%)

Query: 52  ITCPETTINFAHFPTTPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKW 103
           + CP  +     F   P    + + ++AT  C +     G     C   G W
Sbjct: 1   VKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNW 52


>d2ok5a3 g.18.1.1 (A:77-137) Complement factor B {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 61

 Score = 23.0 bits (49), Expect = 9.1
 Identities = 6/37 (16%), Positives = 14/37 (37%)

Query: 67  TPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKW 103
            P        ++ +  C +     G+    C+ +G+W
Sbjct: 14  WPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRW 50



 Score = 23.0 bits (49), Expect = 9.1
 Identities = 6/37 (16%), Positives = 14/37 (37%)

Query: 145 TPTGREVTFIEQATGRCVENAEEVGTPTYLCKGDGKW 181
            P        ++ +  C +     G+    C+ +G+W
Sbjct: 14  WPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRW 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.442 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 810,748
Number of extensions: 39299
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 58
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)