RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1710
(77 letters)
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular
signal regulated kinase 3, serine phosphorylation,
threonine phosphorylation; 2.25A {Homo sapiens}
Length = 320
Score = 49.6 bits (119), Expect = 5e-09
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 18 VRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
+ F++G RY +L +G G G+V S
Sbjct: 2 MNIHGFDLGSRYMDLKPLGCGGNGLVFS 29
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK
Ser/Thr protein kinase fold, Ser/Thr protein kinase,
TRA; 1.95A {Leishmania major}
Length = 362
Score = 49.6 bits (119), Expect = 5e-09
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 18 VRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
+ + + YT +I G+YG V +
Sbjct: 13 LIAELHAMQSPYTVQRFISSGSYGAVCA 40
>3qyz_A Mitogen-activated protein kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding CE
phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus
norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A*
4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A
3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A*
2oji_A* ...
Length = 364
Score = 48.8 bits (117), Expect = 9e-09
Identities = 26/34 (76%), Positives = 29/34 (85%)
Query: 12 AGNAELVRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
A E+VRGQ F+VGPRYTNL+YIGEGAYGMV S
Sbjct: 12 AAGPEMVRGQVFDVGPRYTNLSYIGEGAYGMVCS 45
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3;
transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae}
PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Length = 353
Score = 48.4 bits (116), Expect = 1e-08
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 17 LVRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
+ + + + + + +GEGAYG+V S
Sbjct: 1 MPKRIVYNISSDFQLKSLLGEGAYGVVCS 29
>3n9x_A Phosphotransferase; malaria kinase, structural genomics,
structural genomics CON SGC; 2.05A {Plasmodium berghei}
PDB: 3nie_A*
Length = 432
Score = 48.6 bits (116), Expect = 1e-08
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 18 VRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
+ V Y IG G+YG V
Sbjct: 17 QGIKNVHVPDNYIIKHLIGRGSYGYVYL 44
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in
transferase-transferase inhibitor complex; HET: JBI;
2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Length = 464
Score = 47.5 bits (113), Expect = 3e-08
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 18 VRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
V TF V RY NL IG GA G+V +
Sbjct: 53 VGDSTFTVLKRYQNLKPIGSGAQGIVCA 80
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural
genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Length = 458
Score = 46.7 bits (111), Expect = 5e-08
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 15 AELVRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
+ +++ RY IG G+YG V
Sbjct: 41 SMPRPHSDWQIPDRYEIRHLIGTGSYGHVCE 71
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP
kinase insertion, autophosphorylation, transferase;
HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X*
2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A*
1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A*
3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Length = 367
Score = 46.6 bits (111), Expect = 7e-08
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 18 VRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
+ +EV RY NL+ +G GAYG V +
Sbjct: 20 LNKTIWEVPERYQNLSPVGSGAYGSVCA 47
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP
kinase, PMK, STK26, stress-activated protein kinase,
structural genomics, PSI; 2.09A {Homo sapiens}
Length = 353
Score = 45.7 bits (109), Expect = 1e-07
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 18 VRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
V +E+ Y + ++G GAYG V S
Sbjct: 15 VNKTAWELPKTYVSPTHVGSGAYGSVCS 42
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling
pathways, linear binding motif; HET: ANP; 1.33A {Homo
sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A*
2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X*
2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A*
1pmq_A* ...
Length = 371
Score = 45.5 bits (108), Expect = 1e-07
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 18 VRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
+ TF V RY NL IG GA G+V +
Sbjct: 16 IGDSTFTVLKRYQNLKPIGSGAQGIVCA 43
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation,
transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens}
SCOP: d.144.1.7
Length = 367
Score = 45.4 bits (108), Expect = 1e-07
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 18 VRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
V +EV Y +L +G GAYG V S
Sbjct: 16 VTKTAWEVRAVYRDLQPVGSGAYGAVCS 43
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase;
structural genomics consortium, SGC, transferase; 2.37A
{Cryptosporidium parvum iowa II}
Length = 388
Score = 45.4 bits (108), Expect = 2e-07
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 20 GQT-FEVGPRYTNLAYIGEGAYGMVVS 45
G+ V +Y + +G+GAYG+V
Sbjct: 1 GRVDRHVLRKYELVKKLGKGAYGIVWK 27
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 40.5 bits (95), Expect = 7e-06
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 1 MSAEGGAGGTLAGNAELVRGQTFEVGP-RYTNLAYIGEGAYGMVVSEAPMKKLLQKGAGT 59
M+ G GG + GQT E+G R + EG + V + G+
Sbjct: 1 MAGPGSLGGASGRDQSDFVGQTVELGELRLRVRRVLAEGGFAFV--------YEAQDVGS 52
Query: 60 NEQLVL 65
+ L
Sbjct: 53 GREYAL 58
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis,
transferase; 2.00A {Leishmania major}
Length = 360
Score = 40.4 bits (95), Expect = 1e-05
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 6 GAGGTLAGN-AELVRGQTFEVGPRYTNLAYIGEGAYGMVVS--------EAPMKKLLQ 54
G G ++ N A ++ + R+ G+G +G V +KK++Q
Sbjct: 1 GPGSMMSLNAAAAADERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQ 58
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP,
transferase; HET: ANP; 1.80A {Homo sapiens} SCOP:
d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A*
3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A*
1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A*
4dit_A* ...
Length = 420
Score = 40.1 bits (94), Expect = 1e-05
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 1 MSAEGGAGGTLAGNAELVRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
+S + A +G YT+ IG G++G+V
Sbjct: 28 VSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQ 72
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor,
transferase-transferase inhibitor CO; HET: ANP; 1.30A
{Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A*
3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A
3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A*
3owj_A* 3owk_A* ...
Length = 330
Score = 38.4 bits (90), Expect = 4e-05
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 18 VRGQTFEVGPRYTNLAYIGEGAYGMVVS 45
+ Y + +G G Y V
Sbjct: 27 SHVVEWGNQDDYQLVRKLGRGKYSEVFE 54
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR;
3.30A {Ustilago maydis}
Length = 394
Score = 38.1 bits (89), Expect = 6e-05
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 22 TFEVGPRYTNLAYIGEGAYGMVVS-------EAPMKKLLQ 54
+ YTN IG G++G+V E +KK+LQ
Sbjct: 35 GEQREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQ 74
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum,
ATP-binding, kinase, nucleoti binding; HET: PTR DRK;
2.65A {Cryptosporidium parvum iowa II}
Length = 383
Score = 37.8 bits (88), Expect = 7e-05
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 FEVGP-RYTNLAYIGEGAYGMVVS 45
E +Y+ +G G++G+V
Sbjct: 2 LETSSKKYSLGKTLGTGSFGIVCE 25
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, PA phosphorylation; HET: STU;
2.6A {Homo sapiens}
Length = 317
Score = 31.9 bits (73), Expect = 0.010
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 20 GQTFEVGP-RYTNLAYIGEGAYGMV 43
G + Y + +GEG + V
Sbjct: 21 GHMVIIDNKHYLFIQKLGEGGFSYV 45
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic;
HET: DKI; 1.53A {Homo sapiens}
Length = 331
Score = 31.4 bits (72), Expect = 0.015
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 28 RYTNLAYIGEGAYGMV 43
+Y NL +GEG+YGMV
Sbjct: 26 KYENLGLVGEGSYGMV 41
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic;
HET: D15; 2.40A {Homo sapiens}
Length = 311
Score = 29.8 bits (68), Expect = 0.046
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 28 RYTNLAYIGEGAYGMV 43
+Y + IGEG+YG+V
Sbjct: 4 KYEKIGKIGEGSYGVV 19
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent
kinase, cell cycle control, alpha/beta, complex
(inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP:
d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B*
2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B
2w9f_B
Length = 326
Score = 28.3 bits (64), Expect = 0.16
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 28 RYTNLAYIGEGAYGMV 43
+Y +A IGEGAYG V
Sbjct: 12 QYECVAEIGEGAYGKV 27
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase,
serine/threonine-protein kinase, ATP-binding,
phosphorylation, CDK; 1.9A {Plasmodium falciparum}
SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Length = 288
Score = 28.2 bits (64), Expect = 0.16
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 28 RYTNLAYIGEGAYGMV 43
+Y L IGEG YG+V
Sbjct: 3 KYHGLEKIGEGTYGVV 18
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding,
serine/threonine-protein kinase, transferase; 1.85A
{Giardia lamblia} PDB: 3gc0_A*
Length = 329
Score = 28.4 bits (64), Expect = 0.18
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 28 RYTNLAYIGEGAYGMV 43
RY + +GEG YG V
Sbjct: 35 RYRRITKLGEGTYGEV 50
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase
inhibitor complex, transferase-transferase activator
complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A*
1ung_A* 1unl_A* 1h4l_A
Length = 292
Score = 28.3 bits (64), Expect = 0.18
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 28 RYTNLAYIGEGAYGMV 43
+Y L IGEG YG V
Sbjct: 3 KYEKLEKIGEGTYGTV 18
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase,
cell cycle, inhibition, cyclin-dependent kinase,
cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens}
PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A*
2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A*
1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A*
...
Length = 299
Score = 28.3 bits (64), Expect = 0.18
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 28 RYTNLAYIGEGAYGMV 43
+ + IGEG YG+V
Sbjct: 4 NFQKVEKIGEGTYGVV 19
>3niz_A Rhodanese family protein; structural genomics, structural
genomics consortium, SGC, phosphotransferase, cyclin
dependent kinase; HET: ADP; 2.40A {Cryptosporidium
parvum} PDB: 2qkr_A*
Length = 311
Score = 28.3 bits (64), Expect = 0.20
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 28 RYTNLAYIGEGAYGMV 43
+Y L +GEG YG+V
Sbjct: 22 KYQKLEKVGEGTYGVV 37
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell
cycle, phosphorylation, ATP-BIN cell division, disease
mutation, kinase; 3.00A {Homo sapiens}
Length = 308
Score = 27.9 bits (63), Expect = 0.21
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 28 RYTNLAYIGEGAYGMV 43
RY +A IG GAYG V
Sbjct: 10 RYEPVAEIGVGAYGTV 25
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A
{Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A
1q97_A* 1q99_A* 1how_A 2jd5_A
Length = 373
Score = 27.7 bits (62), Expect = 0.25
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 20 GQTFEVGPRYTNLAYIGEGAYGMVV 44
G+ ++ RY + +G G + V
Sbjct: 13 GEPYKDA-RYILVRKLGWGHFSTVW 36
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85;
cyclin-dependent kinase, signaling protein,transfera
cycle complex; HET: MES AGS; 2.90A {Saccharomyces
cerevisiae} PDB: 2pk9_A*
Length = 317
Score = 27.5 bits (62), Expect = 0.28
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 28 RYTNLAYIGEGAYGMV 43
++ L +G G Y V
Sbjct: 6 QFKQLEKLGNGTYATV 21
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation,
protein-protein interaction, PR kinase, cell cycle,
transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP:
d.144.1.7
Length = 346
Score = 27.5 bits (62), Expect = 0.35
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 28 RYTNLAYIGEGAYGMV 43
RY L ++GEG + V
Sbjct: 11 RYEKLDFLGEGQFATV 26
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase,
CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A
{Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A*
3iq7_A* 2wb8_A
Length = 336
Score = 27.2 bits (59), Expect = 0.45
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 28 RYTNLAYIGEGAYGMV 43
+ IGEG +G V
Sbjct: 21 KLQRCEKIGEGVFGEV 36
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural
genomics, structural consortium, SGC, transferase; HET:
FEF; 2.40A {Homo sapiens}
Length = 324
Score = 27.2 bits (61), Expect = 0.48
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 28 RYTNLAYIGEGAYGMV 43
Y L +GEG Y V
Sbjct: 3 TYIKLDKLGEGTYATV 18
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 26.9 bits (60), Expect = 0.59
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 28 RYTNLAYIGEGAYGMV 43
+ IGEG+ G+V
Sbjct: 46 LLDSYVKIGEGSTGIV 61
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative
splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A
{Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A*
1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 26.9 bits (60), Expect = 0.64
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 28 RYTNLAYIGEGAYGMV 43
+YT IG+GA G V
Sbjct: 21 KYTRFEKIGQGASGTV 36
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 26.6 bits (59), Expect = 0.78
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 25 VGPRYTNLAYIGEGAYGMVV 44
V RY L IG+G++G VV
Sbjct: 95 VAYRYEVLKVIGKGSFGQVV 114
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G;
2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 26.2 bits (58), Expect = 1.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 25 VGPRYTNLAYIGEGAYGMVV 44
RY + IG+G++G VV
Sbjct: 52 WMDRYEIDSLIGKGSFGQVV 71
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 26.1 bits (58), Expect = 1.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 25 VGPRYTNLAYIGEGAYGMVV 44
+ RY + +GEGA+G VV
Sbjct: 12 LSARYEIVDTLGEGAFGKVV 31
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A*
2exe_A 3nr9_A*
Length = 355
Score = 26.1 bits (58), Expect = 1.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 25 VGPRYTNLAYIGEGAYGMVV 44
+ RY + +GEG +G VV
Sbjct: 17 LQERYEIVGNLGEGTFGKVV 36
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum
3D7}
Length = 360
Score = 25.7 bits (57), Expect = 1.4
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 25 VGPRYTNLAYIGEGAYGMVV 44
+ + + +G+G +G V+
Sbjct: 33 LNNAFLVIRKMGDGTFGRVL 52
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding;
HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A*
3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A*
Length = 351
Score = 25.7 bits (57), Expect = 1.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 28 RYTNLAYIGEGAYGMV 43
+Y LA IG+G +G V
Sbjct: 18 KYEKLAKIGQGTFGEV 33
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 25.4 bits (56), Expect = 1.9
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 20 GQTFEVGPR-YTNLAYIGEGAYGMV 43
GQ ++ NL +G G G V
Sbjct: 17 GQRYQAEINDLENLGEMGSGTCGQV 41
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP;
2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A*
2gcd_A*
Length = 348
Score = 25.1 bits (55), Expect = 2.2
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 28 RYTNLAYIGEGAYGMV 43
+++L IG G++G V
Sbjct: 55 LFSDLREIGHGSFGAV 70
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET:
824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A*
3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Length = 289
Score = 25.4 bits (56), Expect = 2.2
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 28 RYTNLAYIGEGAYGMV 43
+ L IG G +G V
Sbjct: 12 EFHELEKIGSGEFGSV 27
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding,
cell cycle progression, phosphorylation, disease
mutation, nucleotide- binding; HET: 274; 2.0A {Homo
sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A*
2uv2_A*
Length = 302
Score = 25.4 bits (56), Expect = 2.3
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 28 RYTNLAYIGEGAYGMV 43
+ + +G+GA+G V
Sbjct: 20 VWEIVGELGDGAFGKV 35
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 25.0 bits (55), Expect = 2.5
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 28 RYTNLAYIGEGAYGMV 43
+ IG G + V
Sbjct: 33 NFRIEKKIGRGQFSEV 48
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 25.1 bits (55), Expect = 2.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 28 RYTNLAYIGEGAYGMV 43
+Y L IGEG++G
Sbjct: 25 KYVRLQKIGEGSFGKA 40
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB:
3dak_A*
Length = 303
Score = 24.6 bits (54), Expect = 3.4
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 28 RYTNLAYIGEGAYGMV 43
Y IG GA +V
Sbjct: 16 DYELQEVIGSGATAVV 31
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase,
nucleus, meiosis, mitosis, cytoplasm, metal-binding,
phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB:
2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A*
2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A*
4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Length = 279
Score = 24.5 bits (54), Expect = 3.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 28 RYTNLAYIGEGAYGMV 43
Y L IG G+YG
Sbjct: 7 DYEVLYTIGTGSYGRC 22
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 24.6 bits (54), Expect = 3.7
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 28 RYTNLAYIGEGAYGMV 43
+ + IG G +G V
Sbjct: 12 DFKEIELIGSGGFGQV 27
>2x7f_A TRAF2 and NCK-interacting protein kinase;
serine/threonine-protein kinase, phosphoprotein; HET:
824; 2.80A {Homo sapiens}
Length = 326
Score = 24.6 bits (54), Expect = 3.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 28 RYTNLAYIGEGAYGMV 43
+ + +G G YG V
Sbjct: 25 IFELVELVGNGTYGQV 40
>2olv_A Penicillin-binding protein 2; transpeptidase fold,
glycosyltransferase family 51, lysozyme transferase;
HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10
e.3.1.1 PDB: 2olu_A* 3dwk_A*
Length = 669
Score = 24.6 bits (54), Expect = 3.9
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 29 YTNLAYIGEGAYGM 42
Y N Y +G G+
Sbjct: 133 YLNKIYYSDGVTGI 146
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion
mutant, catalytic domain, synthetic inhibitor, TRAN
transferase inhibitor complex; HET: 0WH; 2.28A {Homo
sapiens} PDB: 4g34_A*
Length = 299
Score = 24.6 bits (54), Expect = 4.1
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 28 RYTNLAYIGEGAYGMVV 44
+ + +G G +G+V
Sbjct: 6 DFEPIQCLGRGGFGVVF 22
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex,
transferase,transcription; HET: BAX; 2.20A {Homo
sapiens}
Length = 405
Score = 24.4 bits (53), Expect = 4.2
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 35 IGEGAYGMV 43
+G G YG V
Sbjct: 29 VGRGTYGHV 37
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator,
signal transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 24.6 bits (54), Expect = 4.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 29 YTNLAYIGEGAYGMVV 44
+ +A +G+GA+G VV
Sbjct: 8 FEEIAVLGQGAFGQVV 23
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition,
juxtamembrane domain, transferase; 2.10A {Homo sapiens}
SCOP: d.144.1.7
Length = 344
Score = 24.2 bits (53), Expect = 4.8
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 12/44 (27%)
Query: 35 IGEGAYGMVV---------SEAPMK---KLLQKGAGTNEQLVLL 66
+G GA+G V+ + ++ K+L++ A ++E+ L+
Sbjct: 53 LGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALM 96
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 24.2 bits (53), Expect = 5.1
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 28 RYTNLAYIGEGAYGMV 43
+ L +GEG+YG V
Sbjct: 30 VFDVLEKLGEGSYGSV 45
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET:
42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 24.1 bits (52), Expect = 5.2
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 35 IGEGAYGMVV 44
+G GA+G V+
Sbjct: 30 LGRGAFGQVI 39
>3aln_A Dual specificity mitogen-activated protein kinase; protein
AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo
sapiens} PDB: 3alo_A*
Length = 327
Score = 24.2 bits (53), Expect = 5.5
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 20 GQTFEVGPR-YTNLAYIGEGAYGMV 43
Q ++ +L IG GAYG V
Sbjct: 14 EQHWDFTAEDLKDLGEIGRGAYGSV 38
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo
sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A
3ckx_A* 3ggf_A* 2xik_A*
Length = 303
Score = 24.2 bits (53), Expect = 5.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 28 RYTNLAYIGEGAYGMV 43
+T L IG+G++G V
Sbjct: 23 LFTKLEKIGKGSFGEV 38
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral
oncogene homolog; kinase, structure, inhibitor,
STI-571, gleevec, transferase activator; HET: STI;
1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A*
1t45_A 3g0e_A* 3g0f_A*
Length = 313
Score = 24.1 bits (53), Expect = 6.2
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 12/44 (27%)
Query: 35 IGEGAYGMVV---------SEAPMK---KLLQKGAGTNEQLVLL 66
+G GA+G VV S+A M K+L+ A E+ L+
Sbjct: 31 LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALM 74
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain,
kinase inhibitor complex, transferase; HET: 5CN; 1.80A
{Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A*
3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Length = 333
Score = 24.1 bits (53), Expect = 6.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 12/44 (27%)
Query: 35 IGEGAYGMVV---------SEAPMK---KLLQKGAGTNEQLVLL 66
+G GA+G VV +A +K K+L+ A +E+ L+
Sbjct: 54 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALM 97
>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET:
EPE CPS; 2.10A {Aquifex aeolicus} SCOP: d.2.1.10 PDB:
3d3h_A* 3nb7_A 3nb6_A
Length = 200
Score = 23.7 bits (52), Expect = 6.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 29 YTNLAYIGEGAYG 41
Y N Y+G GAYG
Sbjct: 117 YLNQIYLGSGAYG 129
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell
WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus
aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Length = 263
Score = 23.9 bits (52), Expect = 6.5
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 29 YTNLAYIGEGAYG 41
Y N Y G+ Y
Sbjct: 170 YLNNIYFGDNQYT 182
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold
consisting of N- and C-lobes, transferase; 2.40A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Length = 370
Score = 23.9 bits (52), Expect = 6.9
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 35 IGEGAYGMVV 44
+GEG +G VV
Sbjct: 89 LGEGCFGQVV 98
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET:
07J; 2.80A {Homo sapiens}
Length = 382
Score = 23.9 bits (52), Expect = 6.9
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 35 IGEGAYGMVV 44
+GEGA+G VV
Sbjct: 77 LGEGAFGQVV 86
>3hzs_A Monofunctional glycosyltransferase; transglycosylase,
peptidoglycan, moenomycin, membrane, cell shape; HET:
M0E; 2.10A {Staphylococcus aureus subsp}
Length = 209
Score = 23.4 bits (51), Expect = 8.6
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 29 YTNLAYIGEGAYG 41
Y N Y G+ Y
Sbjct: 117 YLNNIYFGDNQYT 129
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A
{Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A*
2x2m_A* 2ivv_A*
Length = 314
Score = 23.7 bits (52), Expect = 8.6
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 35 IGEGAYGMVV 44
+GEG +G VV
Sbjct: 31 LGEGEFGKVV 40
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold
consisting of N- and C-lobes, transferase; HET: PTR
ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A*
2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A
1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A
2fgi_A* 3js2_A* 3ky2_A ...
Length = 334
Score = 23.4 bits (51), Expect = 9.0
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 35 IGEGAYGMVV 44
+GEGA+G VV
Sbjct: 43 LGEGAFGQVV 52
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
domain, hormone-growth factor complex; 1.50A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
1gag_A* 1irk_A 3bu3_A* ...
Length = 322
Score = 23.4 bits (51), Expect = 9.7
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 35 IGEGAYGMVV 44
+G+G++GMV
Sbjct: 33 LGQGSFGMVY 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.397
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,109,307
Number of extensions: 52869
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 73
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.5 bits)