RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1710
         (77 letters)



>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 345

 Score = 47.1 bits (111), Expect = 2e-08
 Identities = 21/24 (87%), Positives = 23/24 (95%)

Query: 20 GQTFEVGPRYTNLAYIGEGAYGMV 43
          GQ F+VGPRYTNL+YIGEGAYGMV
Sbjct: 1  GQVFDVGPRYTNLSYIGEGAYGMV 24


>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 348

 Score = 34.1 bits (77), Expect = 6e-04
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 23 FEVGPRYTNLAYIGEGAYGMV 43
          +EV  RY NL+ +G GAYG V
Sbjct: 14 WEVPERYQNLSPVGSGAYGSV 34


>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 355

 Score = 33.8 bits (76), Expect = 8e-04
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 18 VRGQTFEVGPRYTNLAYIGEGAYGMV 43
          V   TF V  RY NL  IG GA G+V
Sbjct: 8  VGDSTFTVLKRYQNLKPIGSGAQGIV 33


>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 346

 Score = 33.3 bits (75), Expect = 0.001
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 22 TFEVGPRYTNLAYIGEGAYGMV 43
           +EV   Y +L  +G GAYG V
Sbjct: 13 AWEVRAVYRDLQPVGSGAYGAV 34


>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 362

 Score = 31.5 bits (70), Expect = 0.005
 Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 20 GQTFEVGPRYTNLAYIGEGAYGMV 43
          G+ ++   RY  +  +G G +  V
Sbjct: 7  GEPYKDA-RYILVRKLGWGHFSTV 29


>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea
          hare (Aplysia californica), twk43 [TaxId: 6500]}
          Length = 352

 Score = 29.6 bits (66), Expect = 0.024
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 15 AELVRGQTFEVGPRYTNLAYIGEGAYGMV 43
           E+ +G  ++    Y  L  +G GA+G+V
Sbjct: 20 VEVKQGSVYD---YYDILEELGSGAFGVV 45


>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 299

 Score = 28.3 bits (62), Expect = 0.065
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 25 VGPRYTNLAYIGEGAYGMV 43
          VG RY     IG G++G +
Sbjct: 5  VGNRYRLGRKIGSGSFGDI 23


>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast
          (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 293

 Score = 28.2 bits (62), Expect = 0.073
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 25 VGPRYTNLAYIGEGAYGMV 43
          VG  Y     IGEG++G++
Sbjct: 3  VGVHYKVGRRIGEGSFGVI 21


>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 318

 Score = 28.3 bits (62), Expect = 0.073
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 28 RYTNLAYIGEGAYGMV 43
          +Y  LA IG+G +G V
Sbjct: 11 KYEKLAKIGQGTFGEV 26


>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 293

 Score = 28.0 bits (62), Expect = 0.079
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 28 RYTNLAYIGEGAYGMV 43
          +YT    IG+GA G V
Sbjct: 21 KYTRFEKIGQGASGTV 36


>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 292

 Score = 28.0 bits (61), Expect = 0.091
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 28 RYTNLAYIGEGAYGMV 43
          +Y  L  IGEG YG V
Sbjct: 3  KYEKLEKIGEGTYGTV 18


>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium
          falciparum) [TaxId: 5833]}
          Length = 286

 Score = 27.9 bits (61), Expect = 0.10
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 28 RYTNLAYIGEGAYGMV 43
          +Y  L  IGEG YG+V
Sbjct: 3  KYHGLEKIGEGTYGVV 18


>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 305

 Score = 27.5 bits (60), Expect = 0.13
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 28 RYTNLAYIGEGAYGMV 43
          +Y  +A IGEGAYG V
Sbjct: 8  QYECVAEIGEGAYGKV 23


>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 321

 Score = 27.3 bits (60), Expect = 0.16
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 28 RYTNLAYIGEGAYGMV 43
          +Y     +G G +G+V
Sbjct: 6  KYMIAEDLGRGEFGIV 21


>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 322

 Score = 27.1 bits (59), Expect = 0.16
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 18 VRGQTFEVGP-RYTNLAYIGEGAYGMV 43
          + G   +VG   +  L  +G GAYG V
Sbjct: 14 LTGHAEKVGIENFELLKVLGTGAYGKV 40


>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 293

 Score = 27.0 bits (59), Expect = 0.20
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 28 RYTNLAYIGEGAYGMV 43
           Y     +G G + +V
Sbjct: 11 YYDTGEELGSGQFAVV 26


>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 309

 Score = 26.9 bits (59), Expect = 0.24
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 28 RYTNLAYIGEGAYGMV 43
           +++L  IG G++G V
Sbjct: 16 LFSDLREIGHGSFGAV 31


>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 350

 Score = 26.7 bits (58), Expect = 0.25
 Identities = 4/16 (25%), Positives = 10/16 (62%)

Query: 28 RYTNLAYIGEGAYGMV 43
          ++  +  +G G++G V
Sbjct: 42 QFDRIKTLGTGSFGRV 57


>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
          {Caenorhabditis elegans, pjk4 [TaxId: 6239]}
          Length = 350

 Score = 26.6 bits (58), Expect = 0.27
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 28 RYTNLAYIGEGAYGMV 43
           Y     +G GA+G+V
Sbjct: 27 HYDIHEELGTGAFGVV 42


>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit
          {Rattus norvegicus [TaxId: 10116]}
          Length = 328

 Score = 26.3 bits (57), Expect = 0.38
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 23 FEVGPRYTNLAYIGEGAYGMV 43
          +     Y  +  +G G Y  V
Sbjct: 31 WGNQDDYQLVRKLGRGKYSEV 51


>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 25.9 bits (56), Expect = 0.44
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 28 RYTNLAYIGEGAYGMV 43
           YT+   IG G++G+V
Sbjct: 21 SYTDTKVIGNGSFGVV 36


>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 311

 Score = 25.9 bits (56), Expect = 0.52
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 16 ELVRGQTFEVGP-RYTNLAYIGEGAYGMVVSEAPMKKLLQKGAGT 59
          +L     +E    R +    +G GA+G VV EA    L++  A  
Sbjct: 11 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVV-EATAYGLIKSDAAM 54


>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 283

 Score = 25.6 bits (55), Expect = 0.63
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)

Query: 22 TFEVGP-RYTNLAYIGEGAYGMV 43
          T E+ P   T    IG G +G V
Sbjct: 1  TTEIHPSCVTRQKVIGAGEFGEV 23


>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase
          kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId:
          9986]}
          Length = 277

 Score = 25.4 bits (55), Expect = 0.71
 Identities = 4/16 (25%), Positives = 6/16 (37%)

Query: 28 RYTNLAYIGEGAYGMV 43
           Y     +G G   +V
Sbjct: 4  NYEPKEILGRGVSSVV 19


>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 298

 Score = 25.6 bits (55), Expect = 0.73
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 28 RYTNLAYIGEGAYGMV 43
           +  +  IGEG YG+V
Sbjct: 3  NFQKVEKIGEGTYGVV 18


>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
          kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 322

 Score = 25.4 bits (55), Expect = 0.78
 Identities = 4/16 (25%), Positives = 9/16 (56%)

Query: 28 RYTNLAYIGEGAYGMV 43
           +  ++ +G G  G+V
Sbjct: 7  DFEKISELGAGNGGVV 22


>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB,
          catalytic domain {Mycobacterium tuberculosis [TaxId:
          1773]}
          Length = 277

 Score = 25.1 bits (54), Expect = 0.86
 Identities = 5/16 (31%), Positives = 6/16 (37%)

Query: 28 RYTNLAYIGEGAYGMV 43
          RY     +G G    V
Sbjct: 8  RYELGEILGFGGMSEV 23


>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein
          kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
          Length = 288

 Score = 24.9 bits (54), Expect = 0.89
 Identities = 6/22 (27%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 24 EVGP--RYTNLAYIGEGAYGMV 43
          ++ P   +  +  +G+GA+G V
Sbjct: 7  DLNPEDFWEIIGELGDGAFGKV 28


>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 307

 Score = 25.0 bits (54), Expect = 0.90
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 21 QTFEVGPRYTNLAYIGEGAYGMV 43
          Q  ++   Y     +G GA+  V
Sbjct: 3  QAEDIRDIYDFRDVLGTGAFSEV 25


>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
          receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 299

 Score = 25.2 bits (54), Expect = 0.91
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 28 RYTNLAYIGEGAYGMVVSEAPMKKLLQKGAGT 59
          R      +G GA+G  V EA    + +     
Sbjct: 14 RLKLGKPLGRGAFG-QVIEADAFGIDKTATCR 44


>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein
          kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 273

 Score = 25.0 bits (54), Expect = 0.98
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 28 RYTNLAYIGEGAYGMV 43
          +Y     +G G +G V
Sbjct: 5  QYQVGPLLGSGGFGSV 20


>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 299

 Score = 24.4 bits (52), Expect = 1.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 28 RYTNLAYIGEGAYGMV 43
          R      +GEGA+G V
Sbjct: 14 RLVLGKPLGEGAFGQV 29


>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
          {Cow (Bos taurus) [TaxId: 9913]}
          Length = 364

 Score = 24.7 bits (53), Expect = 1.5
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 28 RYTNLAYIGEGAYGMV 43
           ++    IG G +G V
Sbjct: 5  DFSVHRIIGRGGFGEV 20


>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
          kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 288

 Score = 24.2 bits (52), Expect = 1.9
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 28 RYTNLAYIGEGAYGMV 43
           +     +GEG++  V
Sbjct: 9  DFKFGKILGEGSFSTV 24


>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 273

 Score = 24.0 bits (51), Expect = 2.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 28 RYTNLAYIGEGAYGMV 43
          R      IGEG +G V
Sbjct: 8  RIELGRCIGEGQFGDV 23


>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 337

 Score = 24.0 bits (51), Expect = 2.1
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 29 YTNLAYIGEGAYGMV 43
          +  L  +G+G +G V
Sbjct: 7  FDYLKLLGKGTFGKV 21


>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 317

 Score = 24.0 bits (51), Expect = 2.2
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 29 YTNLAYIGEGAYGMV 43
          +  +  +G GA+G V
Sbjct: 11 FKKIKVLGSGAFGTV 25


>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 263

 Score = 24.2 bits (52), Expect = 2.2
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 28 RYTNLAYIGEGAYGMV 43
           +     +G+G +G V
Sbjct: 7  DFEIGRPLGKGKFGNV 22


>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 271

 Score = 23.8 bits (51), Expect = 2.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 28 RYTNLAYIGEGAYGMV 43
           +  +  +GEGAYG V
Sbjct: 6  DWDLVQTLGEGAYGEV 21


>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 269

 Score = 23.8 bits (51), Expect = 2.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 29 YTNLAYIGEGAYGMV 43
          Y  L  IG G+YG  
Sbjct: 6  YEVLYTIGTGSYGRC 20


>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 273

 Score = 23.9 bits (51), Expect = 2.6
 Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 22 TFEVGPR-YTNLAYIGEGAYGMV 43
          T  +G +    L  +G+G++G+V
Sbjct: 2  TCLIGEKDLRLLEKLGDGSFGVV 24


>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 320

 Score = 23.9 bits (51), Expect = 2.7
 Identities = 4/16 (25%), Positives = 9/16 (56%)

Query: 28 RYTNLAYIGEGAYGMV 43
           +     +G+G++G V
Sbjct: 3  DFILHKMLGKGSFGKV 18


>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 301

 Score = 23.7 bits (50), Expect = 2.9
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 28 RYTNLAYIGEGAYGMVVSEAPMKKLLQKGAGT 59
              +  IGEGA+G  V +A    LL     T
Sbjct: 14 NIEYVRDIGEGAFG-RVFQARAPGLLPYEPFT 44


>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 272

 Score = 23.5 bits (50), Expect = 3.1
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 28 RYTNLAYIGEGAYGMV 43
              +  +G G +G V
Sbjct: 14 TLKLVERLGAGQFGEV 29


>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 276

 Score = 23.4 bits (50), Expect = 3.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 28 RYTNLAYIGEGAYGMV 43
          + T    IG G++G V
Sbjct: 9  QITVGQRIGSGSFGTV 24


>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 285

 Score = 23.5 bits (50), Expect = 3.5
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 28 RYTNLAYIGEGAYGMV 43
                 +G+G +G V
Sbjct: 18 SLRLEVKLGQGCFGEV 33


>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a
           {Aquifex aeolicus [TaxId: 63363]}
          Length = 187

 Score = 23.0 bits (49), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 28  RYTNLAYIGEGAYGM 42
            Y N  Y+G GAYG+
Sbjct: 103 LYLNQIYLGSGAYGV 117


>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 303

 Score = 22.9 bits (48), Expect = 5.9
 Identities = 5/19 (26%), Positives = 8/19 (42%)

Query: 25 VGPRYTNLAYIGEGAYGMV 43
          +         IG+G +G V
Sbjct: 1  IARTIVLQESIGKGRFGEV 19


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 267,099
Number of extensions: 9015
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 48
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.5 bits)