BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17102
         (412 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LPV|A Chain A, Drosophila Melanogaster Doublesex (dsx), Nmr, 18
          Structures
          Length = 52

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query: 57 PKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 93
          P CARCRNHG+   LKGHKRYC++R C C KC L A+
Sbjct: 8  PNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTAD 44


>pdb|2DUT|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
           The Native Conformation
 pdb|2DUT|B Chain B, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
           The Native Conformation
 pdb|2DUT|C Chain C, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
           The Native Conformation
 pdb|2DUT|D Chain D, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
           The Native Conformation
          Length = 423

 Score = 31.6 bits (70), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 318 CKGDVLQAIEMMVYSEQLEEPRSAFSPLVSAFQR---NFASQQANRRFLTAPYSGTGYLP 374
            KG   + +  +++ EQ E   S F  L++AF +   N++ + ANR ++   Y+    LP
Sbjct: 87  AKGSTAREMAEVLHFEQAENIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYA---LLP 143

Query: 375 TIMRPQSEY 383
           T ++   +Y
Sbjct: 144 TYLQLSKKY 152


>pdb|2H4Q|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
           The Cleaved Conformation
          Length = 382

 Score = 31.6 bits (70), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 318 CKGDVLQAIEMMVYSEQLEEPRSAFSPLVSAFQR---NFASQQANRRFLTAPYSGTGYLP 374
            KG   + +  +++ EQ E   S F  L++AF +   N++ + ANR ++   Y+    LP
Sbjct: 87  AKGSTAREMAEVLHFEQAENIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYA---LLP 143

Query: 375 TIMRPQSEY 383
           T ++   +Y
Sbjct: 144 TYLQLSKKY 152


>pdb|3PQS|A Chain A, The Crystal Structures Of Porcine Pathogen Aph87_tbpb
          Length = 521

 Score = 28.5 bits (62), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 221 NQLVDPT-GEVTKSPAPVPSPRIQEESSDESETVLPENLSLPKN 263
           ++L++P  G VTK P  +PS R  E S  E +TV  E+LSL  N
Sbjct: 35  DKLMEPALGYVTKIPVNIPSVRKTEIS--EIDTVTDESLSLVPN 76


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,654,381
Number of Sequences: 62578
Number of extensions: 396849
Number of successful extensions: 588
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 8
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)