Query psy17102
Match_columns 412
No_of_seqs 138 out of 229
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 21:57:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lpv_A Doublesex protein; tran 99.9 6.9E-25 2.3E-29 165.8 -0.8 47 55-101 6-52 (52)
2 2dhy_A CUE domain-containing p 97.1 0.00047 1.6E-08 54.2 4.3 42 291-332 17-58 (67)
3 1wgl_A TOLL-interacting protei 96.8 0.0011 3.8E-08 50.7 4.0 44 291-334 8-51 (59)
4 1otr_A Protein CUE2; protein-p 96.7 0.0016 5.4E-08 48.5 4.0 41 295-335 7-47 (49)
5 1p3q_Q VPS9P, vacuolar protein 90.5 0.075 2.6E-06 40.5 0.9 40 292-331 12-51 (54)
6 1wj7_A Hypothetical protein (R 82.2 1.5 5E-05 37.3 4.5 38 296-334 43-80 (104)
7 2knz_A Ubiquilin-4; cytoplasm, 81.2 1.3 4.5E-05 32.5 3.4 26 307-332 25-50 (53)
8 2bwb_A Ubiquitin-like protein 81.2 1.2 4E-05 32.1 3.1 26 307-332 21-46 (46)
9 2di0_A Activating signal coint 79.6 2.3 8E-05 33.9 4.6 39 294-332 15-53 (71)
10 2dna_A Unnamed protein product 79.1 2.3 7.9E-05 33.4 4.4 29 307-335 33-61 (67)
11 2jy5_A Ubiquilin-1; UBA, alter 77.2 1.7 5.9E-05 31.8 3.0 37 294-332 14-51 (52)
12 2dah_A Ubiquilin-3; UBA domain 76.4 2.1 7.1E-05 31.9 3.2 40 294-335 11-51 (54)
13 1wr1_B Ubiquitin-like protein 75.5 2.3 7.8E-05 32.2 3.3 35 296-332 21-56 (58)
14 1ify_A HHR23A, UV excision rep 74.7 1.8 6.1E-05 31.3 2.5 26 307-332 21-46 (49)
15 1vg5_A RSGI RUH-014, rhomboid 73.9 2.7 9.1E-05 33.3 3.5 40 293-334 30-69 (73)
16 2g3q_A Protein YBL047C; endocy 73.0 3 0.0001 28.9 3.2 25 308-332 18-42 (43)
17 1vej_A Riken cDNA 4931431F19; 72.8 3 0.0001 33.2 3.5 39 294-334 31-70 (74)
18 2cwb_A Chimera of immunoglobul 70.7 2.9 0.0001 35.4 3.2 37 295-333 69-106 (108)
19 1z96_A DNA-damage, UBA-domain 66.3 6.7 0.00023 26.2 3.7 24 307-330 17-40 (40)
20 2cp8_A NEXT to BRCA1 gene 1 pr 65.8 4.4 0.00015 30.8 3.0 31 303-335 21-51 (54)
21 1wji_A Tudor domain containing 62.5 6.5 0.00022 30.0 3.4 28 307-334 22-49 (63)
22 1wiv_A UBP14, ubiquitin-specif 61.4 7 0.00024 30.5 3.5 37 296-335 33-70 (73)
23 2cp9_A EF-TS, EF-TSMT, elongat 58.9 4.4 0.00015 31.6 2.0 22 309-330 25-46 (64)
24 1veg_A NEDD8 ultimate buster-1 57.1 7.7 0.00026 31.5 3.2 37 295-333 32-68 (83)
25 1tr8_A Conserved protein (MTH1 54.7 6 0.0002 33.1 2.2 33 296-329 69-101 (102)
26 3u5e_g 60S ribosomal protein L 48.2 22 0.00077 30.8 4.8 39 51-89 36-85 (121)
27 2dak_A Ubiquitin carboxyl-term 42.8 13 0.00045 27.9 2.2 35 296-333 13-48 (63)
28 2cpw_A CBL-interacting protein 41.2 24 0.00083 26.7 3.5 38 294-334 21-60 (64)
29 2dkl_A Trinucleotide repeat co 37.5 28 0.00095 28.0 3.5 47 296-345 25-76 (85)
30 2lbc_A Ubiquitin carboxyl-term 33.5 33 0.0011 28.5 3.5 36 296-334 82-118 (126)
31 2dag_A Ubiquitin carboxyl-term 32.3 33 0.0011 26.7 3.1 38 295-335 12-51 (74)
32 4g3o_A E3 ubiquitin-protein li 31.3 65 0.0022 24.8 4.5 39 294-333 19-57 (58)
33 1whc_A RSGI RUH-027, UBA/UBX 3 30.6 38 0.0013 25.6 3.1 41 292-335 9-51 (64)
34 2dai_A Ubadc1, ubiquitin assoc 30.1 38 0.0013 27.1 3.2 36 296-334 33-69 (83)
35 2e72_A POGO transposable eleme 29.2 4.1 0.00014 30.6 -2.4 24 55-78 11-35 (49)
36 2lva_A Ubiquitin carboxyl-term 33.7 13 0.00044 32.8 0.0 37 295-331 21-57 (129)
37 2ejs_A Autocrine motility fact 27.1 85 0.0029 24.0 4.5 40 293-333 14-53 (58)
38 1dv0_A DNA repair protein HHR2 27.0 37 0.0013 24.3 2.4 26 308-333 18-43 (47)
39 2ekk_A UBA domain from E3 ubiq 25.2 59 0.002 22.7 3.1 32 296-331 13-45 (47)
40 3k9o_A Ubiquitin-conjugating e 24.8 49 0.0017 29.5 3.2 27 305-331 174-200 (201)
41 3e7l_A Transcriptional regulat 24.4 56 0.0019 23.7 3.0 23 307-329 20-42 (63)
42 2ekf_A Ancient ubiquitous prot 23.0 1E+02 0.0034 23.9 4.2 41 293-334 14-54 (61)
43 4ae4_A Ubiquitin-associated pr 21.4 64 0.0022 27.2 3.2 25 307-331 89-113 (118)
44 3iz5_i 60S ribosomal protein L 21.1 61 0.0021 28.0 3.0 39 51-89 36-87 (119)
45 2yuc_A TNF receptor-associated 20.5 61 0.0021 23.9 2.5 37 58-94 18-56 (76)
46 3hcs_A TNF receptor-associated 20.0 7.2 0.00025 33.1 -3.1 38 60-97 88-125 (170)
No 1
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=99.89 E-value=6.9e-25 Score=165.81 Aligned_cols=47 Identities=66% Similarity=1.298 Sum_probs=45.4
Q ss_pred CCCCCccccCCCCccccCCCCccCCCCCCCCCCchhHHHHHHhHHHH
Q psy17102 55 RTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQ 101 (412)
Q Consensus 55 R~P~CaRCRNHGv~s~lKGHKr~Cpfr~C~C~kC~Li~ERqRVmAaQ 101 (412)
+.|+|+||+|||++++|||||++|+|++|.|+||.||+|||+|||||
T Consensus 6 ~~p~CaRCrNHG~~~~lKGHKr~C~~r~C~C~kC~li~eRqrvmaaQ 52 (52)
T 1lpv_A 6 TPPNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQ 52 (52)
T ss_dssp CCSSCHHHHTTTCCCTTTTCGGGCTTTTCCSHHHHHHHHHHCCSCCC
T ss_pred CCCCCcccccCCCccccCCccCccCCCCCcCCCCcCcHHHhHHhccC
Confidence 45999999999999999999999999999999999999999999986
No 2
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.07 E-value=0.00047 Score=54.18 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=38.7
Q ss_pred CCCChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102 291 NGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYS 332 (412)
Q Consensus 291 ~~Rsp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s 332 (412)
....-++.|...||+-.+.+|+.+|+.|+|||-.||+.+|+-
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 556678999999999999999999999999999999999973
No 3
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.78 E-value=0.0011 Score=50.71 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=39.4
Q ss_pred CCCChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcCC
Q psy17102 291 NGRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ 334 (412)
Q Consensus 291 ~~Rsp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e 334 (412)
-...-++.|.-.||+-.+.+|+.||+.|+|||=.||+.+|+-..
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE 51 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence 34467889999999999999999999999999999999997544
No 4
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=96.66 E-value=0.0016 Score=48.54 Aligned_cols=41 Identities=15% Similarity=0.295 Sum_probs=37.3
Q ss_pred hhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcCCC
Q psy17102 295 PVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQL 335 (412)
Q Consensus 295 p~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e~ 335 (412)
=+..|.-.||+-...++..+|.-|+||+=.||..+|+..+.
T Consensus 7 ~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~~ 47 (49)
T 1otr_A 7 KLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKENDD 47 (49)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence 36789999999999999999999999999999999986543
No 5
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=90.45 E-value=0.075 Score=40.48 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=31.4
Q ss_pred CCChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHh
Q psy17102 292 GRSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVY 331 (412)
Q Consensus 292 ~Rsp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~ 331 (412)
++.-++-|.-.||+=.+.+++.||+.++|++-+||+.+|.
T Consensus 12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4556788999999999999999999999999999999985
No 6
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=82.18 E-value=1.5 Score=37.28 Aligned_cols=38 Identities=26% Similarity=0.487 Sum_probs=30.0
Q ss_pred hhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcCC
Q psy17102 296 VDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ 334 (412)
Q Consensus 296 ~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e 334 (412)
|+.|+.+ -.-.+.....+|..|+|||-+||+.+|.+..
T Consensus 43 Vk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 43 VKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred HHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4455555 3556778888999999999999999997764
No 7
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=81.24 E-value=1.3 Score=32.53 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.6
Q ss_pred chhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102 307 RRGEVETVLQRCKGDVLQAIEMMVYS 332 (412)
Q Consensus 307 kRs~LE~iLq~C~GDVVqAIE~~L~s 332 (412)
.|......|+.|+|||-+|||.++++
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 45677788999999999999999975
No 8
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=81.21 E-value=1.2 Score=32.14 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.7
Q ss_pred chhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102 307 RRGEVETVLQRCKGDVLQAIEMMVYS 332 (412)
Q Consensus 307 kRs~LE~iLq~C~GDVVqAIE~~L~s 332 (412)
.|......|+.++|||-+|||.++++
T Consensus 21 d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 21 DFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 35556678999999999999999864
No 9
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=79.59 E-value=2.3 Score=33.86 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=35.1
Q ss_pred ChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102 294 SPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYS 332 (412)
Q Consensus 294 sp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s 332 (412)
+=|.-+.-|||.--...++.+|+.|++||-++|..+|.+
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 346667889999999999999999999999999999964
No 10
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=79.13 E-value=2.3 Score=33.42 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=23.3
Q ss_pred chhHHHHHHHhhCchHHHHHHHHHhcCCC
Q psy17102 307 RRGEVETVLQRCKGDVLQAIEMMVYSEQL 335 (412)
Q Consensus 307 kRs~LE~iLq~C~GDVVqAIE~~L~s~e~ 335 (412)
.|...-..|+.|+|||-+|||.++++.+.
T Consensus 33 d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 33 NYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 44455578899999999999999986554
No 11
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=77.20 E-value=1.7 Score=31.83 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=28.1
Q ss_pred ChhhhHHhh-cCCCchhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102 294 SPVDVLRRV-FPNRRRGEVETVLQRCKGDVLQAIEMMVYS 332 (412)
Q Consensus 294 sp~DiL~RV-FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s 332 (412)
.-|+.|... | ..|......|+.|+|||-+|||.++++
T Consensus 14 ~~l~~L~~MGF--~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 14 QQLEQLSAMGF--LNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHTTC--CCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHcCC--CCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 445666554 3 246677888999999999999999864
No 12
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=76.39 E-value=2.1 Score=31.88 Aligned_cols=40 Identities=30% Similarity=0.299 Sum_probs=27.8
Q ss_pred ChhhhHHhh-cCCCchhHHHHHHHhhCchHHHHHHHHHhcCCC
Q psy17102 294 SPVDVLRRV-FPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQL 335 (412)
Q Consensus 294 sp~DiL~RV-FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e~ 335 (412)
.-|..|.-. |.. +...-.+|+.|+|||-+|||.++++.+.
T Consensus 11 ~~l~~L~~MGF~d--~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 11 VQLEQLRSMGFLN--REANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHTCCC--HHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCCc--HHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 345555554 443 3344577889999999999999976543
No 13
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=75.49 E-value=2.3 Score=32.25 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=25.9
Q ss_pred hhhHHhh-cCCCchhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102 296 VDVLRRV-FPNRRRGEVETVLQRCKGDVLQAIEMMVYS 332 (412)
Q Consensus 296 ~DiL~RV-FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s 332 (412)
|+.|... | ..|......|+.++|||-+|||.++++
T Consensus 21 i~~L~~MGF--~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 21 LRQLNDMGF--FDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHcCC--CcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4444443 4 345566678999999999999999975
No 14
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=74.66 E-value=1.8 Score=31.33 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.6
Q ss_pred chhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102 307 RRGEVETVLQRCKGDVLQAIEMMVYS 332 (412)
Q Consensus 307 kRs~LE~iLq~C~GDVVqAIE~~L~s 332 (412)
.|......|+.|+|||-+|||.++++
T Consensus 21 ~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 21 ERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp CHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 57788899999999999999999975
No 15
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=73.91 E-value=2.7 Score=33.30 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=31.1
Q ss_pred CChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcCC
Q psy17102 293 RSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ 334 (412)
Q Consensus 293 Rsp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e 334 (412)
..-|+.|.-. .-.|......|+.|+|||-+|||.+|++.+
T Consensus 30 ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 30 EEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 3445666655 346788889999999999999999997654
No 16
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=73.01 E-value=3 Score=28.86 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.5
Q ss_pred hhHHHHHHHhhCchHHHHHHHHHhc
Q psy17102 308 RGEVETVLQRCKGDVLQAIEMMVYS 332 (412)
Q Consensus 308 Rs~LE~iLq~C~GDVVqAIE~~L~s 332 (412)
|......|+.|+|||-+|++.++.+
T Consensus 18 ~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 18 EEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 4667778999999999999999864
No 17
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=72.81 E-value=3 Score=33.21 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=28.5
Q ss_pred ChhhhHHhh-cCCCchhHHHHHHHhhCchHHHHHHHHHhcCC
Q psy17102 294 SPVDVLRRV-FPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ 334 (412)
Q Consensus 294 sp~DiL~RV-FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e 334 (412)
.-|+.|... | ..|......|+.++|||-+|||.++++-+
T Consensus 31 ~qi~qL~eMGF--~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 31 QELEELKALGF--ANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp HHHHHHHHHTC--CCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHcCC--CcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 345555554 4 34566677889999999999999997543
No 18
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=70.70 E-value=2.9 Score=35.44 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=26.7
Q ss_pred hhhhHHhh-cCCCchhHHHHHHHhhCchHHHHHHHHHhcC
Q psy17102 295 PVDVLRRV-FPNRRRGEVETVLQRCKGDVLQAIEMMVYSE 333 (412)
Q Consensus 295 p~DiL~RV-FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~ 333 (412)
-|+-|... | ..+...-.+|+.++|||-+|||.++++.
T Consensus 69 qL~qL~eMGF--~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 69 QLQQLRDMGI--QDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHHHHTTTC--CCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHcCC--CCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 34444433 4 3455666789999999999999999753
No 19
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=66.27 E-value=6.7 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.0
Q ss_pred chhHHHHHHHhhCchHHHHHHHHH
Q psy17102 307 RRGEVETVLQRCKGDVLQAIEMMV 330 (412)
Q Consensus 307 kRs~LE~iLq~C~GDVVqAIE~~L 330 (412)
.+......|+.|+|||-+||+.++
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHC
Confidence 456667789999999999999874
No 20
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.84 E-value=4.4 Score=30.76 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=23.7
Q ss_pred cCCCchhHHHHHHHhhCchHHHHHHHHHhcCCC
Q psy17102 303 FPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQL 335 (412)
Q Consensus 303 FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e~ 335 (412)
|-.+.+ --.+|++++|||-+|||.+|+..+.
T Consensus 21 F~D~~~--N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 21 FCDRQL--NLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp CCCHHH--HHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred CCcHHH--HHHHHHHcCCCHHHHHHHHHhccCC
Confidence 444443 3478999999999999999976554
No 21
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=62.53 E-value=6.5 Score=29.95 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=22.8
Q ss_pred chhHHHHHHHhhCchHHHHHHHHHhcCC
Q psy17102 307 RRGEVETVLQRCKGDVLQAIEMMVYSEQ 334 (412)
Q Consensus 307 kRs~LE~iLq~C~GDVVqAIE~~L~s~e 334 (412)
.|......|+.|+|||-+|||.++.+.+
T Consensus 22 ~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 22 SKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 3455677899999999999999997544
No 22
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=61.37 E-value=7 Score=30.53 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=28.3
Q ss_pred hhhHHhh-cCCCchhHHHHHHHhhCchHHHHHHHHHhcCCC
Q psy17102 296 VDVLRRV-FPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQL 335 (412)
Q Consensus 296 ~DiL~RV-FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e~ 335 (412)
|..|... | .|......|+.|+|||-+|||.++++.+.
T Consensus 33 v~~L~~MGF---~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 33 VDTLLSFGF---AEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHTC---CHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred HHHHHHcCC---CHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4445544 6 36677789999999999999999976543
No 23
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=58.86 E-value=4.4 Score=31.55 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=18.2
Q ss_pred hHHHHHHHhhCchHHHHHHHHH
Q psy17102 309 GEVETVLQRCKGDVLQAIEMMV 330 (412)
Q Consensus 309 s~LE~iLq~C~GDVVqAIE~~L 330 (412)
.+-...|..|+||+.+||+.+-
T Consensus 25 ~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 25 VNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 3445678999999999999885
No 24
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=57.09 E-value=7.7 Score=31.51 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=29.1
Q ss_pred hhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcC
Q psy17102 295 PVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSE 333 (412)
Q Consensus 295 p~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~ 333 (412)
-|+.|.-. .--|......|+.|+|||-+|||.++++.
T Consensus 32 ~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~sh~ 68 (83)
T 1veg_A 32 SINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAHHG 68 (83)
T ss_dssp HHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 35555554 33678889999999999999999999743
No 25
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=54.72 E-value=6 Score=33.05 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=23.7
Q ss_pred hhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHH
Q psy17102 296 VDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMM 329 (412)
Q Consensus 296 ~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~ 329 (412)
||+++.=+ +=.|..-...|+.|+||||.||-.+
T Consensus 69 i~lv~~q~-~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 69 IELVMNQT-GASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHH-CCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 44444432 5567777888999999999998653
No 26
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=48.16 E-value=22 Score=30.81 Aligned_cols=39 Identities=28% Similarity=0.683 Sum_probs=29.1
Q ss_pred hcCCCCCCCccccC--CCCcc--------ccCCCCc-cCCCCCCCCCCch
Q psy17102 51 HRYQRTPKCARCRN--HGVVS--------ALKGHKR-YCRWRDCVCAKCT 89 (412)
Q Consensus 51 ~~~~R~P~CaRCRN--HGv~s--------~lKGHKr-~Cpfr~C~C~kC~ 89 (412)
++-...|+|+-|.. |||.. .-|-+|+ ...|.-+-|++|+
T Consensus 36 KK~~~~pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CV 85 (121)
T 3u5e_g 36 KKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCV 85 (121)
T ss_dssp CCCCCCCBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHH
T ss_pred ccCCCCCCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHH
Confidence 56777889999977 88764 1233333 5899999999997
No 27
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.80 E-value=13 Score=27.86 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=26.6
Q ss_pred hhhHHhh-cCCCchhHHHHHHHhhCchHHHHHHHHHhcC
Q psy17102 296 VDVLRRV-FPNRRRGEVETVLQRCKGDVLQAIEMMVYSE 333 (412)
Q Consensus 296 ~DiL~RV-FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~ 333 (412)
|..|.-. |+ |......|+.|+|||-+|||.++++.
T Consensus 13 v~~L~~MGF~---~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 13 VTTIVSMGFS---RDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHTCC---HHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred HHHHHHcCCC---HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3334443 65 57777889999999999999999754
No 28
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.18 E-value=24 Score=26.73 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=28.9
Q ss_pred ChhhhHHhh-cCCCchhHHHHHHHhhCc-hHHHHHHHHHhcCC
Q psy17102 294 SPVDVLRRV-FPNRRRGEVETVLQRCKG-DVLQAIEMMVYSEQ 334 (412)
Q Consensus 294 sp~DiL~RV-FP~~kRs~LE~iLq~C~G-DVVqAIE~~L~s~e 334 (412)
.-|+.|.-. || +......|+.|+| ||-+|||.+++..+
T Consensus 21 ~~i~~L~~MGF~---~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 21 SALDVLLSMGFP---RARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CHHHHHHHHTCC---HHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 446666654 54 4677788999998 99999999997543
No 29
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.48 E-value=28 Score=28.05 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=31.1
Q ss_pred hhhHHhh-cCCCchhHHHHHHHhhCchHHHHHHHHHhcCCCC----CCCCccCCC
Q psy17102 296 VDVLRRV-FPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQLE----EPRSAFSPL 345 (412)
Q Consensus 296 ~DiL~RV-FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e~~----~~kSAFSPL 345 (412)
|+.|... || |...+..|+.|++||-+|||.++...+.. .+-..|.-.
T Consensus 25 I~qL~~MGF~---~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D~~~~~~~d~n~~ 76 (85)
T 2dkl_A 25 IKQLTDMGFP---REPAEEALKSNNMNLDQAMSALLEKKVDVDKRGLGVTDHNGM 76 (85)
T ss_dssp HHHHHHHTCC---HHHHHHHHHHTTSCHHHHHHHHHTTSCCSSCCCCTTCCCCCC
T ss_pred HHHHHHcCCC---HHHHHHHHHHcCCCHHHHHHHHHHCcCCcccccCCcchhhhh
Confidence 3345554 75 35566667999999999999999754322 245555544
No 30
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=33.55 E-value=33 Score=28.53 Aligned_cols=36 Identities=14% Similarity=0.355 Sum_probs=27.8
Q ss_pred hhhHHhh-cCCCchhHHHHHHHhhCchHHHHHHHHHhcCC
Q psy17102 296 VDVLRRV-FPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ 334 (412)
Q Consensus 296 ~DiL~RV-FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e 334 (412)
|..|.-. |+ +......|+.|+|||-+|+|.++++-+
T Consensus 82 v~~L~~MGF~---~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 82 VAIITSMGFQ---RNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHTSC---HHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred HHHHHHcCCC---HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4444443 55 677888999999999999999997654
No 31
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.31 E-value=33 Score=26.72 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=28.4
Q ss_pred hhhhHHhh-cCCCchhHHHHHHHhhCc-hHHHHHHHHHhcCCC
Q psy17102 295 PVDVLRRV-FPNRRRGEVETVLQRCKG-DVLQAIEMMVYSEQL 335 (412)
Q Consensus 295 p~DiL~RV-FP~~kRs~LE~iLq~C~G-DVVqAIE~~L~s~e~ 335 (412)
-|+.|... |+ |......|+.|+| ||-+|||.+++..+.
T Consensus 12 ~v~~L~~MGF~---~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 12 VIIQLVEMGFP---MDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHSCC---HHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCC---HHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 34444444 66 5778889999997 999999999975443
No 32
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=31.33 E-value=65 Score=24.81 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=33.7
Q ss_pred ChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcC
Q psy17102 294 SPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSE 333 (412)
Q Consensus 294 sp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~ 333 (412)
+=++.+..+||+=-+..+..=|++- |.|-..||-+|.|.
T Consensus 19 ~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeGr 57 (58)
T 4g3o_A 19 AMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEGR 57 (58)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHccc
Confidence 3477888999999999988888875 99999999999874
No 33
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.65 E-value=38 Score=25.56 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=29.6
Q ss_pred CCChhhhHHhh-cCCCchhHHHHHHHhh-CchHHHHHHHHHhcCCC
Q psy17102 292 GRSPVDVLRRV-FPNRRRGEVETVLQRC-KGDVLQAIEMMVYSEQL 335 (412)
Q Consensus 292 ~Rsp~DiL~RV-FP~~kRs~LE~iLq~C-~GDVVqAIE~~L~s~e~ 335 (412)
...-|+.|.-. |+ |......|+.| ++||-+|||.+++..+.
T Consensus 9 ~~~~v~~L~~MGF~---~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 9 ELTALESLIEMGFP---RGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCCHHHHHHTTTCC---HHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCC---HHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 34455555554 55 56777788889 69999999999975543
No 34
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.14 E-value=38 Score=27.10 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=27.2
Q ss_pred hhhHHhh-cCCCchhHHHHHHHhhCchHHHHHHHHHhcCC
Q psy17102 296 VDVLRRV-FPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ 334 (412)
Q Consensus 296 ~DiL~RV-FP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e 334 (412)
|+.|.-. |+ +......|+.|+|||-+|||.++++.+
T Consensus 33 i~~L~~MGF~---~~~a~~AL~~t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 33 LRQLTEMGFP---ENRATKALQLNHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHTCC---HHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred HHHHHHcCCC---HHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 4555554 55 466677888999999999999997544
No 35
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.17 E-value=4.1 Score=30.65 Aligned_cols=24 Identities=38% Similarity=0.773 Sum_probs=19.8
Q ss_pred CCCCCccccCCCC-ccccCCCCccC
Q psy17102 55 RTPKCARCRNHGV-VSALKGHKRYC 78 (412)
Q Consensus 55 R~P~CaRCRNHGv-~s~lKGHKr~C 78 (412)
..+.|-||..+=. +.+||+|.++|
T Consensus 11 ~~~~CPrCn~~f~~~~sLr~Hmkyc 35 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEALRGHMCYC 35 (49)
T ss_dssp SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred CceeCCcccccccchHHHHhhhhhc
Confidence 5678999998755 68999999874
No 36
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.67 E-value=13 Score=32.76 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=29.7
Q ss_pred hhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHh
Q psy17102 295 PVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVY 331 (412)
Q Consensus 295 p~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~ 331 (412)
-|+=|..|-=-+-...|...|+.|+||+.+|+.++-.
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 3455666666677889999999999999999987753
No 37
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.09 E-value=85 Score=23.99 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=35.0
Q ss_pred CChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcC
Q psy17102 293 RSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSE 333 (412)
Q Consensus 293 Rsp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~ 333 (412)
.+=++.+..+||+=-+..+..=|++-+ .|-..||-+|.|.
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (58)
T 2ejs_A 14 NAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGR 53 (58)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcC
Confidence 345678889999999999999998877 9999999999876
No 38
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=26.96 E-value=37 Score=24.26 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=21.8
Q ss_pred hhHHHHHHHhhCchHHHHHHHHHhcC
Q psy17102 308 RGEVETVLQRCKGDVLQAIEMMVYSE 333 (412)
Q Consensus 308 Rs~LE~iLq~C~GDVVqAIE~~L~s~ 333 (412)
|...-.+|..|++|+-.|++.++.+-
T Consensus 18 ~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 18 ESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp HHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 45566789999999999999998654
No 39
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.21 E-value=59 Score=22.73 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=22.9
Q ss_pred hhhHHhh-cCCCchhHHHHHHHhhCchHHHHHHHHHh
Q psy17102 296 VDVLRRV-FPNRRRGEVETVLQRCKGDVLQAIEMMVY 331 (412)
Q Consensus 296 ~DiL~RV-FP~~kRs~LE~iLq~C~GDVVqAIE~~L~ 331 (412)
|+-|... ||. ......|+.| |||-+|||.+++
T Consensus 13 v~~L~~MGF~~---~~a~~AL~~~-~n~e~A~~~L~~ 45 (47)
T 2ekk_A 13 LQQLMDMGFTR---EHAMEALLNT-STMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHCCH---HHHHHHHHHS-CSHHHHHHHHHT
T ss_pred HHHHHHcCCCH---HHHHHHHHHc-CCHHHHHHHHHc
Confidence 4444443 664 5566778888 599999999986
No 40
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=24.76 E-value=49 Score=29.54 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.9
Q ss_pred CCchhHHHHHHHhhCchHHHHHHHHHh
Q psy17102 305 NRRRGEVETVLQRCKGDVLQAIEMMVY 331 (412)
Q Consensus 305 ~~kRs~LE~iLq~C~GDVVqAIE~~L~ 331 (412)
.-.|+....+|..|++|+=+|+|++|.
T Consensus 174 Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 174 GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 345667777999999999999999986
No 41
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=24.39 E-value=56 Score=23.72 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=19.9
Q ss_pred chhHHHHHHHhhCchHHHHHHHH
Q psy17102 307 RRGEVETVLQRCKGDVLQAIEMM 329 (412)
Q Consensus 307 kRs~LE~iLq~C~GDVVqAIE~~ 329 (412)
.+..|..+|+.|+|++.+|-+.+
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 57789999999999999987754
No 42
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.97 E-value=1e+02 Score=23.89 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=35.1
Q ss_pred CChhhhHHhhcCCCchhHHHHHHHhhCchHHHHHHHHHhcCC
Q psy17102 293 RSPVDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQ 334 (412)
Q Consensus 293 Rsp~DiL~RVFP~~kRs~LE~iLq~C~GDVVqAIE~~L~s~e 334 (412)
.+=++.+..+||+=-+..+-.=|++-+ .|-..||-+|.|..
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr~ 54 (61)
T 2ekf_A 14 ATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGAV 54 (61)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCCC
Confidence 345788889999999999999898775 99999999998764
No 43
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=21.42 E-value=64 Score=27.22 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=20.9
Q ss_pred chhHHHHHHHhhCchHHHHHHHHHh
Q psy17102 307 RRGEVETVLQRCKGDVLQAIEMMVY 331 (412)
Q Consensus 307 kRs~LE~iLq~C~GDVVqAIE~~L~ 331 (412)
.+......|+.|+||+-+|+|.++.
T Consensus 89 ~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 89 ELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456667799999999999999985
No 44
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=21.15 E-value=61 Score=28.04 Aligned_cols=39 Identities=10% Similarity=0.286 Sum_probs=28.4
Q ss_pred hcCCCCCCCccccC--CCCcc---------c-cCCCCc-cCCCCCCCCCCch
Q psy17102 51 HRYQRTPKCARCRN--HGVVS---------A-LKGHKR-YCRWRDCVCAKCT 89 (412)
Q Consensus 51 ~~~~R~P~CaRCRN--HGv~s---------~-lKGHKr-~Cpfr~C~C~kC~ 89 (412)
++-...|+|+-|.. |||.. - -|-.|+ ..+|.-.-|++|+
T Consensus 36 KK~~~~pkC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~CV 87 (119)
T 3iz5_i 36 KKRASGPKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPAV 87 (119)
T ss_dssp SCCSSCCCSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHHH
T ss_pred ccCCCCCCCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCccchHHHH
Confidence 56677889999977 88653 1 122333 4899999999997
No 45
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=20.48 E-value=61 Score=23.89 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=29.1
Q ss_pred CC-ccccCCCCccccCCCCc-cCCCCCCCCCCchhHHHH
Q psy17102 58 KC-ARCRNHGVVSALKGHKR-YCRWRDCVCAKCTLIAER 94 (412)
Q Consensus 58 ~C-aRCRNHGv~s~lKGHKr-~Cpfr~C~C~kC~Li~ER 94 (412)
.| ..|..-=....+..|.. .|+++.-.|..|.....|
T Consensus 18 ~C~~~C~~~v~r~~l~~H~~~~C~~r~v~C~~C~~~~~~ 56 (76)
T 2yuc_A 18 PCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSG 56 (76)
T ss_dssp BCTTCCSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCH
T ss_pred CCCccccHHhhHhHHHhhCHhhCCCcceECCCCCCccCH
Confidence 56 57877666788899988 799999999999765443
No 46
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=20.01 E-value=7.2 Score=33.15 Aligned_cols=38 Identities=16% Similarity=0.403 Sum_probs=30.1
Q ss_pred ccccCCCCccccCCCCccCCCCCCCCCCchhHHHHHHh
Q psy17102 60 ARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRV 97 (412)
Q Consensus 60 aRCRNHGv~s~lKGHKr~Cpfr~C~C~kC~Li~ERqRV 97 (412)
..|..-+.+..++.|...|.|+.+.|..|.....|..+
T Consensus 88 ~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~~r~~l 125 (170)
T 3hcs_A 88 EGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHI 125 (170)
T ss_dssp TTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEEEGGGH
T ss_pred CCCCceecHhHHHHHHhcCCceeeECCCCChHHHHHHH
Confidence 56766677788889999999999999999886555443
Done!