RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17102
(412 letters)
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA
binding, gene regulation,; NMR {Synthetic} SCOP:
g.62.1.1
Length = 52
Score = 111 bits (278), Expect = 1e-30
Identities = 31/48 (64%), Positives = 36/48 (75%)
Query: 54 QRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQ 101
+ P CARCRNHG+ LKGHKRYC++R C C KC L A+RQRVMA Q
Sbjct: 5 RTPPNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQ 52
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.2 bits (88), Expect = 0.002
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKD 27
E+ RK +EE+ + +E +++
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQE 111
Score = 35.5 bits (81), Expect = 0.015
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKDGPTTPKLSLWFSH 40
E +RK+ +E + + ++E E+ K L W
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKK-----DLEEWNQR 126
Score = 30.5 bits (68), Expect = 0.64
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKD 27
+A K E+E E+ +K EE +++
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQS 128
Score = 28.2 bits (62), Expect = 3.4
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 1 EARRKKKEEEEEEEE-------EKQEEEGEEKK 26
A + ++E E+ + ++Q E+ E+ K
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Score = 27.8 bits (61), Expect = 5.6
Identities = 2/23 (8%), Positives = 9/23 (39%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGE 23
+ + K ++ Q+ + +
Sbjct: 130 QVEKNKINNRIADKAFYQQPDAD 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.005
Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 65/169 (38%)
Query: 210 TMPKSSRTPSPNQLVDPTGEVTKSPAPVPSP--RIQEESSDESETVLPE-NLSLPKNTPM 266
P +S PS + E VPSP I + ++ + + + N LP
Sbjct: 313 AYPNTSLPPSILEDSLENNE------GVPSPMLSISNLTQEQVQDYVNKTNSHLPAG--- 363
Query: 267 SADSTSPMSAEHAYLYTHPYSPYQNGRS------PVDVLRRVFPNRRRGEVETVLQRCKG 320
+ + NG P L + R+ + + L + +
Sbjct: 364 ----------KQVEISLV------NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR- 406
Query: 321 DVLQAIEMMVYSEQLEEPRSAFSPLVSAFQRNFASQQANRRFL--TAPY 367
I +SE + + FS RFL +P+
Sbjct: 407 -----IP---FSE--RKLK--FS----------------NRFLPVASPF 427
Score = 37.3 bits (86), Expect = 0.010
Identities = 43/258 (16%), Positives = 73/258 (28%), Gaps = 86/258 (33%)
Query: 44 CRFLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE--------RQ 95
++ T TP R G +G V A IAE
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQG---------LVTA--VAIAETDSWESFFVS 295
Query: 96 RVMAAQVA----LRRQQAQEENEARELGLIYTSGAPLPPGSANPSSPGGQDNNNGA---- 147
A V +R +A LPP S S +NN G
Sbjct: 296 VRKAITVLFFIGVRCYEA-------------YPNTSLPP-SILEDS---LENNEGVPSPM 338
Query: 148 LNLQGNRVGGEQNHSYPDSPSGNRS-PDEKKIKINVDEDSEDSL---DDNM--------- 194
L++ + EQ Y + N P K+++I SL N+
Sbjct: 339 LSISN--LTQEQVQDYVNKT--NSHLPAGKQVEI--------SLVNGAKNLVVSGPPQSL 386
Query: 195 ----NAEHRTRTSTNNNNTTMPKSSRTPSPNQLVDPTGEVTKSPAPVPSP-------RIQ 243
+ + + + + +P S R + P V +P S I
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP---VA---SPFHSHLLVPASDLIN 440
Query: 244 EESSDESETVLPENLSLP 261
++ + + +++ +P
Sbjct: 441 KDLVKNNVSFNAKDIQIP 458
Score = 33.9 bits (77), Expect = 0.12
Identities = 65/488 (13%), Positives = 112/488 (22%), Gaps = 215/488 (44%)
Query: 8 EEEEEEEEEKQEEE------G------EEKKDGPTTPKLSLWFSHLPNCRFLTTVHRYQR 55
E ++E E G E K G L+L + +L
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEG------ 98
Query: 56 TPKCARCRN--HGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVM----AAQVALRRQ-- 107
N H + + L T + + + ++ A++ +R
Sbjct: 99 --------NDIHALAAKLLQEND------------TTLVKTKELIKNYITARIMAKRPFD 138
Query: 108 --------QAQEENEARELGLIYTSGAPLPPGSANPSSPGGQDNNNGALN-LQGNRVGGE 158
+A E A+ L I+ GGQ N + L+ +
Sbjct: 139 KKSNSALFRAVGEGNAQ-LVAIF----------------GGQGNTDDYFEELR------D 175
Query: 159 QNHSYPDSPSGNRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSRTP 218
+Y
Sbjct: 176 LYQTYH-----------------------------------------------------V 182
Query: 219 SPNQLVDPTGEVTKSPAPVPSPRIQEESSDESETVLPENLSLPK--NTPMSADSTSPMSA 276
L+ + E ++E V + L++ + P S +P
Sbjct: 183 LVGDLIKFSAETLSELIRTTL---------DAEKVFTQGLNILEWLENP----SNTP--- 226
Query: 277 EHAYLYTHPYS-P---------Y-----QNGRSPVDVLRRVFPNRRRGEVETVLQRCKGD 321
+ YL + P S P Y G +P ++ + +G
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL-----KG-----ATGHSQG 276
Query: 322 VLQA--IEMMVYSEQLEEPRSAFSPLVSAFQRNFASQQANRRFLTAP-------YSGTGY 372
++ A I E S + F +A P + G
Sbjct: 277 LVTAVAIAETDSWESFFV--SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG- 333
Query: 373 LPTIM-------RPQSEY------PTLPLQPP--------------GGVP-DLYSGNTAY 404
+P+ M + Q + LP G P LY N
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 405 RIESALSE 412
R A S
Sbjct: 394 RKAKAPSG 401
Score = 30.0 bits (67), Expect = 1.7
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 29/106 (27%)
Query: 266 MSADSTSPMSAEHAYLYTH---PYSPYQNGRSPVDVLRRVF----PNRRRG-----EVET 313
M A ST P++ H L P + + L+ F P G E T
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIA----SQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 314 VLQRCKGDVLQAIEMMVYSEQLEEP--RSAFSPLVSA----FQRNF 353
+ L + + Y L EP F +++ F+ +
Sbjct: 57 PAE------LVG-KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.018
Identities = 31/172 (18%), Positives = 47/172 (27%), Gaps = 50/172 (29%)
Query: 157 GEQNHSYPDSPSGNRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRTSTNNNNTTMPKSSR 216
GE + Y D S + D +D D MPKS
Sbjct: 12 GEHQYQYKDILSVFE-DAFVD-----NFDCKDVQD-------------------MPKSIL 46
Query: 217 TPSPNQLVDPTGEVTKSPAPVPSPRI--------QEESSDE-SETVLPENLSLPKNTPMS 267
+ + +D + S V QEE + E VL N +P+
Sbjct: 47 S---KEEID---HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-SPIK 99
Query: 268 ADSTSPMSAEHAYLYTH--------PYSPYQNGR-SPVDVLRRVFPNRRRGE 310
+ P Y+ ++ Y R P LR+ R +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
>3p57_P Histone acetyltransferase P300; protein-DNA complex, transcription
factor, transcriptional activation, zinc finger; HET:
DNA; 2.19A {Homo sapiens} PDB: 2ka6_A 2kje_A 3io2_A
1f81_A 2k8f_A
Length = 112
Score = 33.8 bits (77), Expect = 0.023
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 41 LPNCRFL------TTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAER 94
LP+C+ + T + + C C+ +++ H ++C+ C C I ++
Sbjct: 32 LPSCQKMKRVVQHTKGCKRKTNGGCPICKQ--LIALCCYHAKHCQENKCPVPFCLNIKQK 89
Query: 95 QRVMAAQVALRRQQ 108
R Q L++ Q
Sbjct: 90 LRQQQLQHRLQQAQ 103
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon;
TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP
PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens}
PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A
Length = 121
Score = 32.0 bits (72), Expect = 0.13
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 41 LPNCRFL------TTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAER 94
LP+C+ + T + + C C+ +++ H ++C+ C C I ++
Sbjct: 33 LPSCQKMKRVVQHTKGCKRKTNGGCPICKQ--LIALAAYHAKHCQENKCPVPFCLNIKQK 90
Query: 95 QRVMAAQVALRRQQAQE 111
R + ++ E
Sbjct: 91 LRQQQLEASIDLSAYIE 107
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 30.3 bits (69), Expect = 0.17
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 10/40 (25%)
Query: 54 QRTPKCARCRN---HGVVSALKGHKRYCRW-RDC-VCAKC 88
P C CR VV+A+ W + VCAKC
Sbjct: 3 MGVPICGACRRPIEGRVVNAMGKQ-----WHVEHFVCAKC 37
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble
monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A
{Vibrio cholerae} PDB: 3o44_A
Length = 721
Score = 32.1 bits (72), Expect = 0.33
Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 14/176 (7%)
Query: 154 RVGGEQNHSYPDSPSGNRSPDEKKIKINVDEDSEDS---LDDNMNAEHRTRTSTNNNNTT 210
RV E+ S G+ +PD K ++I++D+DS + L+D + + T +
Sbjct: 190 RVNLER--SLQYGIVGSATPDAKIVRISLDDDSTGAGIHLNDQLGYRQFGASYTTLDAYF 247
Query: 211 MPKSSRTPSPNQLVDPTGEVTKSPAPVPSPRIQEESSDESETV------LPENLSLPKNT 264
S+ + + K+ P E + V + + + +
Sbjct: 248 REWSTDAIAQDYRFVFNASNNKAQILKTFPVDNINEKFERKEVSGFELGVTGGVEVSGDG 307
Query: 265 PMSADSTSPMSAEHAYLY--THPYSPYQNGRSPVDVLRRVFPNRRRGEVETVLQRC 318
P + + +L T Y +N ++ V + ++ E++L R
Sbjct: 308 PKAKLEARASYTQSRWLTYNTQDYRIERNAKNAQAV-SFTWNRQQYATAESLLNRS 362
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 29.9 bits (67), Expect = 0.68
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 203 STNNNNTTMPKSSRTPSPNQLVDPTGEVTKSPAPVPSPRIQEESSDESET 252
S+ ++ +M K S +P +++ P K+P V +P + SS+++ +
Sbjct: 2 SSGSSGMSMLKPSGLKAPTKILKPGSTALKTPTAVVAPVEKTISSEKASS 51
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 28.6 bits (64), Expect = 0.69
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 12/42 (28%)
Query: 54 QRTPKCARCR-----NHGVVSALKGHKRYCRW-RDC-VCAKC 88
+ C C + V AL + C VC+ C
Sbjct: 3 SGSSGCGGCGEDVVGDGAGVVALDRV-----FHVGCFVCSTC 39
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 28.9 bits (65), Expect = 0.74
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 12/45 (26%)
Query: 51 HRYQRTPKCARCR-----NHGVVSALKGHKRYCRW-RDC-VCAKC 88
+ +PKC C V W +DC C+ C
Sbjct: 10 TTREDSPKCKGCFKAIVAGDQNVEYKGTV-----WHKDCFTCSNC 49
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 29.9 bits (66), Expect = 0.79
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 8 EEEEEEEEEKQEEEGEEKKDGPTTPKLSLWFSHLPNCRFLTTVHRYQRTPKCARCRNHGV 67
EE E Q + +++ L + R L + + CARC
Sbjct: 20 EEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARC--LQP 77
Query: 68 VSALKGHKRYCRWRDC---VCAKCT 89
L +R C +C VC C+
Sbjct: 78 YRLLLNSRRQC--LECSLFVCKSCS 100
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 0.83
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 12/41 (29%)
Query: 58 KCARCRNHG---VVSALKGHKRYCRWRDCVCAKCTL-IAER 94
C C+ + V +G D VCA C L ++++
Sbjct: 23 TCPECKVYPPKIVERFSEG--------DVVCALCGLVLSDK 55
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 67
Score = 27.3 bits (60), Expect = 1.8
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 296 VDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVYSEQLEEPRSA 341
+D + +FPN +E VL+ G V I+ ++ P S
Sbjct: 22 MDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESGPSSG 67
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 29.4 bits (65), Expect = 1.9
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKDG 28
+ ++ EE + +++ E+ D
Sbjct: 316 ASEDDADADDAAEEADDDDDDDEDAGDA 343
Score = 28.7 bits (63), Expect = 3.6
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEE 24
A + ++ EE +++ +E
Sbjct: 315 TASEDDADADDAAEEADDDDDDDE 338
Score = 28.3 bits (62), Expect = 5.3
Identities = 2/28 (7%), Positives = 15/28 (53%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKDG 28
+ + + + ++ E+ +++ ++ +D
Sbjct: 313 DDTASEDDADADDAAEEADDDDDDDEDA 340
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease,
SH3-binding, thiol protease, UBL conjugation pathway,
structural genomics; 2.10A {Homo sapiens} SCOP:
a.118.23.1
Length = 144
Score = 28.6 bits (63), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKDG 28
EA +KK EE++ +EE Q + + ++ G
Sbjct: 117 EAEVRKKLEEKDRQEEAQRLQQKRQETG 144
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 27.4 bits (61), Expect = 2.1
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 15/42 (35%)
Query: 57 PKCARCRN--------HGVVSALKGHKRYCRW-RDC-VCAKC 88
KCA C+N VV+ W C C KC
Sbjct: 16 KKCAGCKNPITGFGKGSSVVAYEGQS-----WHDYCFHCKKC 52
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 28.9 bits (65), Expect = 2.8
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 2 ARRKKKEEEEEEEEEKQEEEGEEKKDGPT 30
R EE E E + Q +
Sbjct: 173 PPRLTAEELEAEVQAAQVAGLVAAGELSE 201
Score = 28.2 bits (63), Expect = 4.9
Identities = 7/33 (21%), Positives = 9/33 (27%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKDGPTTPK 33
EA E + EE K E +
Sbjct: 202 EAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Score = 27.8 bits (62), Expect = 6.6
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKDG 28
R +E E E + + +
Sbjct: 173 PPRLTAEELEAEVQAAQVAGLVAAGELS 200
Score = 27.4 bits (61), Expect = 8.8
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 7 KEEEEEEEEEKQEEEGEEKKDGPTTPK 33
+ E + + GE ++
Sbjct: 182 EAEVQAAQVAGLVAAGELSEEAAEAVL 208
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription,
lysine trimethylation, protein, histone-binding
protein, transcription-structural complex; HET: M3L;
0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 28.2 bits (62), Expect = 2.8
Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 13/59 (22%)
Query: 42 PNCRFLTTVHRYQRTPKCARCRNHGVVSALK----GHKRYCRWRDC-------VCAKCT 89
+ H + C C + + + G CRW C C C
Sbjct: 20 HFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRW--CAEGGNLICCDFCH 76
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 27.5 bits (61), Expect = 2.9
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 10/40 (25%)
Query: 54 QRTPKCARCRNH---GVVSALKGHKRYCRW-RDC-VCAKC 88
QR P C +C + VV A + +C VCA C
Sbjct: 23 QRMPLCDKCGSGIVGAVVKARDKY-----RHPECFVCADC 57
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 90
Score = 27.4 bits (61), Expect = 3.0
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 51 HRYQRTPKCARCRNH---GVVSALKGHKRYCRWRDC-VCAKC 88
+RTP CA C + AL K + + CA C
Sbjct: 20 PAGKRTPMCAHCNQVIRGPFLVALG--KSWH--PEEFNCAHC 57
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 27.9 bits (61), Expect = 3.7
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKD 27
E + ++E++++++++ EEE EE D
Sbjct: 49 EDEDEDEDEDDDDDDDEDEEEEEEVTD 75
Score = 27.2 bits (59), Expect = 7.3
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKDGPTTPKLSL 36
E + ++E+E+E+++ ++E EE+++ T L
Sbjct: 45 ENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDL 80
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 28.1 bits (63), Expect = 3.8
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKD 27
+K EE E + E ++ K+
Sbjct: 176 PPEDVEKLAEEAAAEVAEPEVIKKGKE 202
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.9 bits (64), Expect = 4.6
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 203 STNNNNTTMPKSSRTPSPNQLVDPTGEVTKSPAPVPSPRIQEESSDESETVLPENLSLPK 262
++ + + T P S T P+ T SP S S T + + P
Sbjct: 1622 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1681
Query: 263 NTPMSADSTSPMSAEHAYLYTHPYSPYQNGRSP 295
+P S S SP S ++ P SP + SP
Sbjct: 1682 YSPTS-PSYSPTSPNYS-----PTSPSYSPTSP 1708
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 26.6 bits (59), Expect = 4.6
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 10/40 (25%)
Query: 54 QRTPKCARCRNH---GVVSALKGHKRYCRW-RDC-VCAKC 88
Q+ P C +C V H +C VC C
Sbjct: 13 QKLPMCDKCGTGIVGVFVKLRDRH-----RHPECYVCTDC 47
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 28.0 bits (63), Expect = 6.1
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 3 RRKKKEEEEEEEEEKQEEEGEEKKD 27
K + + + EE ++
Sbjct: 241 DIAKDMVNDPNYDSVKVEETDDPNK 265
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger,
transcription activator; 3.00A {Escherichia coli} SCOP:
e.64.1.1
Length = 192
Score = 27.3 bits (60), Expect = 7.1
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 58 KCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLI--AERQRVMAAQVALRRQQAQEENEA 115
C C + + A + + C+ C A ++R ++ A Q +E
Sbjct: 136 SCNCCGGNFITHAHQPVGSF------ACSLCQPPSRAVKRRKLSQNPADIIPQLLDEQRV 189
Query: 116 R 116
+
Sbjct: 190 Q 190
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 27.9 bits (62), Expect = 7.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKK 26
E +K++EEEE + E + +E++
Sbjct: 394 ENENMRKKKEEEERRARMEAQLKEQR 419
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 27.6 bits (62), Expect = 8.1
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 5 KKKEEEEEEEEEKQEEEGEEKKDGPTTPK 33
+ EE EEEE +EE+ + + +
Sbjct: 219 ETVEEPMEEEEAAKEEKEDSDDEAAVEEE 247
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 25.7 bits (56), Expect = 8.9
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 54 QRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKC 88
R C C + LK H+ YC R +C C
Sbjct: 15 LRLAVCQHCDLELSILKLKEHEDYCGARTELCGNC 49
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 27.1 bits (60), Expect = 9.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 7 KEEEEEEEEEKQEEEGEEKKDGPTTP 32
K E++E +EEEG E +
Sbjct: 201 KTLPTAEQKEAEEEEGAEGAEEKVAE 226
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 27.4 bits (61), Expect = 9.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 6 KKEEEEEEEEEKQEEEGEEKKDGPTTPKL 34
K E EE +EEK E E E K+ P T L
Sbjct: 526 KDFELEETDEEKAEREKEIKEYEPLTKAL 554
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB:
2qy9_A 2xxa_B* 1fts_A
Length = 503
Score = 27.5 bits (61), Expect = 9.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 3 RRKKKEEEEEEEEEKQEEEGEE 24
+KE+ E+E E Q E+
Sbjct: 14 GFGQKEQTPEKETEVQNEQPVV 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.371
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,124,969
Number of extensions: 357167
Number of successful extensions: 1548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1446
Number of HSP's successfully gapped: 86
Length of query: 412
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 316
Effective length of database: 4,021,377
Effective search space: 1270755132
Effective search space used: 1270755132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)