RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17102
(412 letters)
>d1lpva_ g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 52
Score = 105 bits (264), Expect = 4e-29
Identities = 31/48 (64%), Positives = 36/48 (75%)
Query: 54 QRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQ 101
+ P CARCRNHG+ LKGHKRYC++R C C KC L A+RQRVMA Q
Sbjct: 5 RTPPNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQ 52
>d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
{Corynebacterium sp. [TaxId: 1720]}
Length = 262
Score = 31.5 bits (70), Expect = 0.14
Identities = 15/96 (15%), Positives = 22/96 (22%)
Query: 10 EEEEEEEKQEEEGEEKKDGPTTPKLSLWFSHLPNCRFLTTVHRYQRTPKCARCRNHGVVS 69
E G P ++ +P + YQ+ H V
Sbjct: 124 IELRAAGLTRSIGVSNHLVPHLERIVAATGVVPAVNQIELHPAYQQREITDWAAAHDVKI 183
Query: 70 ALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALR 105
G ++ T A AQ LR
Sbjct: 184 ESWGPLGQGKYDLFGAEPVTAAAAAHGKTPAQAVLR 219
>d1mi2a_ d.9.1.1 (A:) Macrophage inflammatory protein-2 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 73
Score = 28.2 bits (63), Expect = 0.30
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 44 CRFLTTVHR--------YQRTPKCARCRNHGVVSALKGHKRYC 78
C+ L T+ R TP C V++ LKG ++ C
Sbjct: 9 CQCLKTLPRVDFKNIQSLSVTPPGPHCAQTEVIATLKGGQKVC 51
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 59
Score = 27.8 bits (62), Expect = 0.32
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 296 VDVLRRVFPNRRRGEVETVLQRCKGDVLQAIEMMVY-SEQLEEPRS 340
+ ++ +FPN + + +VL+ +G+ AI ++ E+ P S
Sbjct: 13 LKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58
>d1f81a_ g.53.1.1 (A:) CREB-binding transcriptional adaptor
protein CBP (p300) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 87
Score = 28.3 bits (63), Expect = 0.41
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 41 LPNCRFLTTVHRYQRTPK------CARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAER 94
LP+C+ + V ++ + K C C+ +++ H ++C+ C C I +
Sbjct: 30 LPSCQKMKRVVQHTKGCKRKTNGGCPVCKQ--LIALCCYHAKHCQENKCPVPFCLNIKHK 87
>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain
{Simian immunodeficiency virus [TaxId: 11723]}
Length = 159
Score = 29.1 bits (64), Expect = 0.63
Identities = 6/58 (10%), Positives = 10/58 (17%), Gaps = 3/58 (5%)
Query: 34 LSLW---FSHLPNCRFLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKC 88
L W +HL + VH + +
Sbjct: 4 LGTWQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHT 61
>d1tvxa_ d.9.1.1 (A:) Platelet basic protein, PBP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 64
Score = 27.1 bits (60), Expect = 0.71
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 44 CRFLTTVHR--------YQRTPKCARCRNHGVVSALKGHKRYC 78
C + T + K C V++ LK ++ C
Sbjct: 3 CLCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKIC 45
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein
vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 54
Score = 26.6 bits (59), Expect = 0.93
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 296 VDVLRRVFPNRRRGEVETVLQRCKGDVLQAIE 327
++ L+ +FP+ +E V K + ++
Sbjct: 16 LNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVD 47
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.4 bits (63), Expect = 1.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 4 RKKKEEEEEEEEEKQEEEGEEKK 26
+K++E EE+ K +E EK+
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEKE 330
>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 154
Score = 27.8 bits (62), Expect = 1.7
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 281 LYTHPYSPYQNGRSPVDVLRRVFPN----RRRGEVETVLQRCKGDVL 323
L T P Q RS L R+ R + + VL +G V
Sbjct: 2 LLTTSRKPSQRTRSFSQRLSRIMGWRYINRGKMSLRDVLIEARGPVA 48
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 26.5 bits (58), Expect = 1.9
Identities = 6/36 (16%), Positives = 18/36 (50%)
Query: 49 TVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCV 84
++ + + +C + N +V + + CR++ C+
Sbjct: 30 SIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCL 65
>d1mgsa_ d.9.1.1 (A:) Melanoma growth stimulating activity (MGSA)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 25.9 bits (57), Expect = 2.4
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 44 CRFLTTVHR--------YQRTPKCARCRNHGVVSALKGHKRYC 78
C+ L T+ C V++ LK ++ C
Sbjct: 9 CQCLQTLQGIHPKNIQSVNVKSPGPHCAQTEVIATLKNGRKAC 51
>d1fnua2 d.15.6.1 (A:108-221) Streptococcal pyrogenic exotoxin A1
{Streptococcus pyogenes [TaxId: 1314]}
Length = 114
Score = 26.6 bits (59), Expect = 2.4
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 169 GNRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRT 202
GN KKI + V D SL ++ + T
Sbjct: 1 GNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVT 34
>d1afsa_ c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 319
Score = 27.2 bits (59), Expect = 3.3
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 9/78 (11%)
Query: 37 WFSHLPNCRFLTTVHRYQRTPKCARCRNHGVVSA---------LKGHKRYCRWRDCVCAK 87
+ P C + ++ C++ ++ K
Sbjct: 181 GLKYKPVCNQVECHLYLNQSKMLDYCKSKDIILVSYCTLGSSRDKTWVDQKSPVLLDDPV 240
Query: 88 CTLIAERQRVMAAQVALR 105
IA++ + A VALR
Sbjct: 241 LCAIAKKYKQTPALVALR 258
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId:
9606]}
Length = 184
Score = 26.9 bits (59), Expect = 3.7
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 29 PTTPKLSLWFSHLPNCRFLTTVHRYQRT 56
TP + L CRFL HR+ +
Sbjct: 149 TPTPASDAFQRKLEGCRFLHGYHRFMHS 176
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab
geranylgeranyltransferase alpha-subunit, N-terminal
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 334
Score = 27.3 bits (59), Expect = 3.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 4 RKKKEEEEEEEEEKQEEEGEEKKD 27
R K + EE+ E K+ E ++ K
Sbjct: 4 RLKVKTSEEQAEAKRLEREQKLKL 27
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 25.0 bits (54), Expect = 4.6
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 46 FLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCV 84
F + C R +N + + +YCR + C
Sbjct: 25 FFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF 63
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 24.9 bits (54), Expect = 6.7
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 5 KKKEEEEEEEEEKQEEEGEEKKDGPTT 31
KK ++EE +K +E + T
Sbjct: 48 NKKCTLDKEEAKKVADETAKDGKTGNT 74
>d3seba2 d.15.6.1 (A:122-238) Staphylococcal enterotoxin B, SEB
{Staphylococcus aureus [TaxId: 1280]}
Length = 117
Score = 25.5 bits (56), Expect = 6.9
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 168 SGNRSPDEKKIKINVDEDSEDSLDDNMNAEHRTRT 202
+GN+ + I + V ED ++ L ++ + T
Sbjct: 1 NGNQLDKYRSITVRVFEDGKNLLSFDVQTNKKKVT 35
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 26.2 bits (57), Expect = 7.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKDG 28
R + +E+E K +E+ + K+G
Sbjct: 254 NDRVQLLKEQERTLALKLQEQEQLLKEG 281
Score = 25.9 bits (56), Expect = 9.7
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 1 EARRKKKEEEEEEEEEKQEEEGEEKKD 27
E + + +E ++ EK E + +
Sbjct: 235 EQKERSYQEHLKQLTEKMENDRVQLLK 261
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 24.6 bits (53), Expect = 9.2
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 44 CRFLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCV 84
F C R + ++ + CR + C+
Sbjct: 24 KGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCL 64
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 24.5 bits (53), Expect = 9.6
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 46 FLTTVHRYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCA---KCTLIAERQR 96
F R T C ++ + + +YCR++ C+ + + ERQR
Sbjct: 31 FFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.127 0.371
Gapped
Lambda K H
0.267 0.0665 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,493,350
Number of extensions: 70108
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 41
Length of query: 412
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,199,356
Effective search space: 388591344
Effective search space used: 388591344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (24.7 bits)