BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17107
(986 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 87/168 (51%), Gaps = 5/168 (2%)
Query: 107 YKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCD 164
Y C K FS L EH++ H G + YKC C K FS KK LTRH + H G + YKC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 165 LCSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSK 222
C K FS ++ L H + H G + Y C C K FS HL H + H G + YKC C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 223 DFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLHQGIKN 269
FS + +L H + H G + YKC C K FS + L H + H G K
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 82/165 (49%), Gaps = 5/165 (3%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCD 299
Y C C K FS +L H + H G K KC C K FS K LTRH + H G + YKC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 300 LCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSK 357
C K S +++L H + H G + Y C C K S + L H + H G + YKC C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 358 ELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 401
S + +L H + H G + YKC C K S + +L H + H G
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Query: 363 SSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLT 420
SS L G + Y C C K S L EH + H G + YKC C K S K LT
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 421 EHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 478
H + H G + YKC C K S +++L H + H G + Y C C K S + L H +
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 479 LHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 536
H G + YKC C K S + +L H + H G + YKC C K S + +L H + H G
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Query: 498 SSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLT 555
SS L G + Y C C K S L EH + H G + YKC C K S K LT
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 556 EHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 613
H + H G + YKC C K S +++L H + H G + Y C C K S + L H +
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 614 LHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 671
H G + YKC C K S + +L H + H G + YKC C K S + +L H + H G
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Query: 525 SSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLT 582
SS L G + Y C C K S L EH + H G + YKC C K S K LT
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 583 EHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 640
H + H G + YKC C K S +++L H + H G + Y C C K S + L H +
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 641 LHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 698
H G + YKC C K S + +L H + H G + YKC C K S + +L H + H G
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Query: 552 SSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLT 609
SS L G + Y C C K S L EH + H G + YKC C K S K LT
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 610 EHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 667
H + H G + YKC C K S +++L H + H G + Y C C K S + L H +
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 668 LHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 725
H G + YKC C K S + +L H + H G + YKC C K S + +L H + H G
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Query: 579 SSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLT 636
SS L G + Y C C K S L EH + H G + YKC C K S K LT
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 637 EHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 694
H + H G + YKC C K S +++L H + H G + Y C C K S + L H +
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 695 LHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 752
H G + YKC C K S + +L H + H G + YKC C K S + +L H + H G
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Query: 606 SSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLT 663
SS L G + Y C C K S L EH + H G + YKC C K S K LT
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 664 EHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 721
H + H G + YKC C K S +++L H + H G + Y C C K S + L H +
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 722 LHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 779
H G + YKC C K S + +L H + H G + YKC C K S + +L H + H G
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 633 SSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLT 690
SS L G + Y C C K S L EH + H G + YKC C K S K LT
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 691 EHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 748
H + H G + YKC C K S +++L H + H G + Y C C K S + L H +
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 749 LHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 785
H G + YKC C K S + +L H + H G + YKC
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 874 KCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVL 931
KC C K F+ K LT + H G + YKC C K FS ++ L H + H G K C
Sbjct: 51 KCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPE 110
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
C K FS+ +HL H + H G + YKC C K S + +L H + H G
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG 158
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 874 KCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVL 931
KC C K F+ +++L + H G + Y C C K FS ++L H + H G K KC
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGR 979
C K FSR+ +L H + H G + YKC C K S + +L H + H G+
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 875 CDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLC 932
C C K F+ L E + H G + YKC C K FS K LT H + H G K KC C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 933 SKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
K FS++++L H + H G + Y C C K S + L H + H G
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 881 EFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSR 938
EF SS+ + L G + Y C C K FS +L H + H G K KC C K FS
Sbjct: 3 EFGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 939 KSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
K LTRH + H G + YKC C K S +++L H + H G
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG 102
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 78/219 (35%), Gaps = 41/219 (18%)
Query: 714 SSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLT 771
SS L G + Y C C K S L EH + H G + YKC C K S K LT
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 772 EHMKLHQGIR-YKCDXXXXXXXXXXXXXXXXXXRQKRLVRSTVHRDIVKVTIELHPNEHH 830
H + H G + YKC +S R ++ H E
Sbjct: 67 RHQRTHTGEKPYKCP---------------------ECGKSFSQRANLRAHQRTHTGEKP 105
Query: 831 LIGIKFGPSGNRTRDLALTLIPGNPYFILEISKVDRKRVGIRC-KCDLCSKEFTHKSSLT 889
+ G S ++ + + R G + KC C K F+ + +L
Sbjct: 106 YACPECGKSFSQ---------------LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLH 150
Query: 890 EDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN 927
+ H G + YKC C K FS + L H + H G K
Sbjct: 151 THQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCV 272
YKC C K FS +L +H + H G + YKC C K FS S L H + H G K KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 273 LCSKEFSRKSHLTRHMKLHQ 292
C K FSR HL+RH + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLHQGVR-YKCD 191
YKC C K FS +L +H + H G + YKC C K FS S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 192 LCSKDFSCKKHLTRHMKLHQ 211
C K FS HL+RH + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 874 KCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVL 931
KC C K F+ S+L + + H G + YKC C K FS S L H + H G K KC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 932 CSKEFSRKSHLTRHMKLHQ 950
C K FSR HL+RH + HQ
Sbjct: 66 CGKSFSRSDHLSRHQRTHQ 84
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCD 245
YKC C K FS +L +H + H G + YKC C K FS L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 246 LCSKEFSCKSYLTGHIKLHQGIK 268
C K FS +L+ H + HQ K
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDL 327
KC C K FS+ S+L +H + H G + YKC C K S S L +H + H G + YKC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 328 CSKELSHKSSLTEHMKLHQ 346
C K S L+ H + HQ
Sbjct: 66 CGKSFSRSDHLSRHQRTHQ 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 353
YKC C K S S+L +H + H G + YKC C K S S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 354 LCSKELSHKSSLTEHMKLHQ 373
C K S L+ H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 407
YKC C K S S+L +H + H G + YKC C K S S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 408 LCSKELSHKSSLTEHMKLHQ 427
C K S L+ H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 461
YKC C K S S+L +H + H G + YKC C K S S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 462 LCSKELSHKSSLTEHMKLHQ 481
C K S L+ H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 515
YKC C K S S+L +H + H G + YKC C K S S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 516 LCSKELSHKSSLTEHMKLHQ 535
C K S L+ H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 569
YKC C K S S+L +H + H G + YKC C K S S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 570 LCSKELSHKSSLTEHMKLHQ 589
C K S L+ H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 623
YKC C K S S+L +H + H G + YKC C K S S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 624 LCSKELSHKSSLTEHMKLHQ 643
C K S L+ H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 677
YKC C K S S+L +H + H G + YKC C K S S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 678 LCSKELSHKSSLTEHMKLHQ 697
C K S L+ H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 731
YKC C K S S+L +H + H G + YKC C K S S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 732 LCSKELSHKSSLTEHMKLHQ 751
C K S L+ H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 758
YKC C K S S+L +H + H G + YKC C K S S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 759 LCSKELSHKSSLTEHMKLHQ 778
C K S L+ H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCD 957
YKC C K FS S L H + H G K KC C K FS+ S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 958 LCSKELSHKSSLTEHMKLHQGR 979
C K S L+ H + HQ +
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNK 86
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 785
YKC C K S S+L +H + H G + YKC C K S S L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 107 YKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQ 157
YKC K FS L +H++ H G + YKC C K FS HL+RH + HQ
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 874 KCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIK 926
KC C K F+ S L + + H G + YKC C K FS +L+ H + HQ K
Sbjct: 34 KCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCD 218
Y C C K F+ KS HM +H G+R Y C +C K F K HL HMK+H G++ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 219 LCSKDFSCKKHLTRHM 234
+C+K F + RH+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 878 CSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKE 935
C K FTHKS M +H G+R Y C C K+F K +L GH+K+H GIK +C +C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 936 FSRKSHLTRHM 946
F + RH+
Sbjct: 75 FMWRDSFHRHV 85
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCV 272
Y C C K F+ K RHM +H G+R Y C +C K+F K +L GH+K+H GIK +C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 273 LCSKEFSRKSHLTRHM 288
+C+K F + RH+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKE 331
C K F+ KS RHM +H G+R Y C +C K+ K L HMK+H GI+ Y+C++C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 332 LSHKSSLTEHM 342
+ S H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 353
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 354 LCSKELSHKSSLTEHM 369
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 380
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 381 LCSKELSHKSSLTEHM 396
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 407
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 408 LCSKELSHKSSLTEHM 423
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 434
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 435 LCSKELSHKSSLTEHM 450
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 461
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 462 LCSKELSHKSSLTEHM 477
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 488
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 489 LCSKELSHKSSLTEHM 504
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 515
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 516 LCSKELSHKSSLTEHM 531
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 542
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 543 LCSKELSHKSSLTEHM 558
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 569
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 570 LCSKELSHKSSLTEHM 585
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 596
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 597 LCSKELSHKSSLTEHM 612
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 623
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 624 LCSKELSHKSSLTEHM 639
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 650
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 651 LCSKELSHKSSLTEHM 666
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 677
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 678 LCSKELSHKSSLTEHM 693
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 704
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 705 LCSKELSHKSSLTEHM 720
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 731
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 732 LCSKELSHKSSLTEHM 747
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 758
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 759 LCSKELSHKSSLTEHM 774
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 113 SKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEF 170
K F++K H +H G+R Y C +C K F K HL HMK+H G++ Y+C++C+K F
Sbjct: 16 GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
Query: 171 SCKSYLTEHM 180
+ H+
Sbjct: 76 MWRDSFHRHV 85
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCD 299
Y C C K F+ KS H+ +H G++ C +C K+F K HL HMK+H G++ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 300 LCSKELSHKSSLTEHM 315
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCD 957
Y C C K F+ KS H+ +H G++ C +C K+F K HL HMK+H G++ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 958 LCSKELSHKSSLTEHM 973
+C+K + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 785
Y C C K +HKS HM +H G+R Y C +C K+ K L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG-RTYE 982
C K F+ KS RHM +H G+R Y C +C K+ K L HMK+H G + YE
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 875 CDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHI 919
C +C K+F K L MK+H GI+ Y+C+ C+K F + H+
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDL 327
KC +C K FSRK L HM+ H GV+ YKC C + SSL +H+++H R +KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 328 CSKELSHKSSLTEHMKLHQG 347
C + S LT H++ H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 380
+KC++C K S K L HM+ H G++ YKC C + SSL +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 381 LCSKELSHKSSLTEHMKLHQG 401
+C + S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 434
+KC++C K S K L HM+ H G++ YKC C + SSL +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 435 LCSKELSHKSSLTEHMKLHQG 455
+C + S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 488
+KC++C K S K L HM+ H G++ YKC C + SSL +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 489 LCSKELSHKSSLTEHMKLHQG 509
+C + S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 542
+KC++C K S K L HM+ H G++ YKC C + SSL +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 543 LCSKELSHKSSLTEHMKLHQG 563
+C + S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 596
+KC++C K S K L HM+ H G++ YKC C + SSL +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 597 LCSKELSHKSSLTEHMKLHQG 617
+C + S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 650
+KC++C K S K L HM+ H G++ YKC C + SSL +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 651 LCSKELSHKSSLTEHMKLHQG 671
+C + S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 704
+KC++C K S K L HM+ H G++ YKC C + SSL +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 705 LCSKELSHKSSLTEHMKLHQG 725
+C + S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 758
+KC++C K S K L HM+ H G++ YKC C + SSL +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 759 LCSKELSHKSSLTEHMKLHQG 779
+C + S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCD 299
+KC++C K FS K L H++ H G+K KC C + S L +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 300 LCSKELSHKSSLTEHMKLHQG 320
+C + S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLHQGVR-YKCD 191
+KC++C K FS K L HM+ H GV+ YKC C + S L +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 192 LCSKDFSCKKHLTRHMKLHQG 212
+C LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCD 957
+KC+ C K FS K L H++ H G+K KC C + S L +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 958 LCSKELSHKSSLTEHMKLHQGRTYETT 984
+C + S LT H++ H G + ++
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCD 245
+KC++C K FS K L HM+ H GV+ YKC C + L +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 246 LCSKEFSCKSYLTGHIKLHQG 266
+C S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 874 KCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVL 931
KC++C K F+ K L M+ H G++ YKC C + S L H+++H + KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 932 CSKEFSRKSHLTRHMKLHQG 951
C S LT H++ H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKC 784
+KC++C K S K L HM+ H G++ YKC C + SSL +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 107 YKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCD 164
+KC++ K FS K L H + H G++ YKC C + L +H+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 165 LCSKEFSCKSYLTEHMKLHQG 185
+C S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 242 YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 297
Y C + C + FS S LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 298 CDLCSKELSHKSSLTEHMKLH 318
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 900 YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 955
Y C C + FS S LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 956 CDLCSKELSHKSSLTEHMKLH 976
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 161 YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 216
Y C + C + FS S LT H+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 217 CDLCSKDFSCKKHLTRHMKLH 237
CD+C + F+ RH K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 188 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 243
Y C + C + FS +LTRH+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 244 CDLCSKEFSCKSYLTGHIKLH 264
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCV 930
C + C + F+ S+LT +++H G + ++C C + FS +LT HI+ H G K C
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 931 LCSKEFSRKSHLTRHMKLH 949
+C ++F+R RH K+H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKE 331
C + FS S+LTRH+++H G + ++C +C + S LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 LSHKSSLTEHMKLH 345
+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 296 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 351
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 352 CDLCSKELSHKSSLTEHMKLH 372
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 323 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 378
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 379 CDLCSKELSHKSSLTEHMKLH 399
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 350 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 405
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 406 CDLCSKELSHKSSLTEHMKLH 426
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 377 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 432
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 433 CDLCSKELSHKSSLTEHMKLH 453
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 404 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 459
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 460 CDLCSKELSHKSSLTEHMKLH 480
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 431 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 486
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 487 CDLCSKELSHKSSLTEHMKLH 507
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 458 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 513
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 514 CDLCSKELSHKSSLTEHMKLH 534
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 485 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 540
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 541 CDLCSKELSHKSSLTEHMKLH 561
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 512 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 567
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 568 CDLCSKELSHKSSLTEHMKLH 588
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 539 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 594
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 595 CDLCSKELSHKSSLTEHMKLH 615
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 566 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 621
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 622 CDLCSKELSHKSSLTEHMKLH 642
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 593 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 648
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 649 CDLCSKELSHKSSLTEHMKLH 669
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 620 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 675
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 676 CDLCSKELSHKSSLTEHMKLH 696
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 647 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 702
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 703 CDLCSKELSHKSSLTEHMKLH 723
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 674 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 729
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 730 CDLCSKELSHKSSLTEHMKLH 750
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 701 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 756
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 757 CDLCSKELSHKSSLTEHMKLH 777
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 107 YKCDLHS--KEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 162
Y C + S + FS LT H ++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CDLCSKEFSCKSYLTEHMKLH 183
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
C + FS S+LTRH+++H G + ++C +C + S LT H++ H G
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 728 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 783
Y C + C + S S+LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 784 CD 785
CD
Sbjct: 65 CD 66
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 242 YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 297
Y C + C + FS + LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 298 CDLCSKELSHKSSLTEHMKLH 318
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 900 YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 955
Y C C + FS + LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 956 CDLCSKELSHKSSLTEHMKLH 976
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 161 YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 216
Y C + C + FS + LT H+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 217 CDLCSKDFSCKKHLTRHMKLH 237
CD+C + F+ RH K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 188 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 243
Y C + C + FS LTRH+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 244 CDLCSKEFSCKSYLTGHIKLH 264
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKE 331
C + FSR + LTRH+++H G + ++C +C + S LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 LSHKSSLTEHMKLH 345
+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCV 930
C + C + F+ + LT +++H G + ++C C + FS +LT HI+ H G K C
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 931 LCSKEFSRKSHLTRHMKLH 949
+C ++F+R RH K+H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 107 YKCDLHS--KEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 162
Y C + S + FS LT H ++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CDLCSKEFSCKSYLTEHMKLH 183
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 296 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 351
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 352 CDLCSKELSHKSSLTEHMKLH 372
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 323 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 378
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 379 CDLCSKELSHKSSLTEHMKLH 399
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 350 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 405
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 406 CDLCSKELSHKSSLTEHMKLH 426
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 377 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 432
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 433 CDLCSKELSHKSSLTEHMKLH 453
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 404 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 459
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 460 CDLCSKELSHKSSLTEHMKLH 480
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 431 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 486
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 487 CDLCSKELSHKSSLTEHMKLH 507
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 458 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 513
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 514 CDLCSKELSHKSSLTEHMKLH 534
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 485 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 540
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 541 CDLCSKELSHKSSLTEHMKLH 561
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 512 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 567
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 568 CDLCSKELSHKSSLTEHMKLH 588
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 539 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 594
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 595 CDLCSKELSHKSSLTEHMKLH 615
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 566 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 621
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 622 CDLCSKELSHKSSLTEHMKLH 642
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 593 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 648
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 649 CDLCSKELSHKSSLTEHMKLH 669
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 620 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 675
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 676 CDLCSKELSHKSSLTEHMKLH 696
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 647 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 702
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 703 CDLCSKELSHKSSLTEHMKLH 723
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 674 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 729
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 730 CDLCSKELSHKSSLTEHMKLH 750
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 701 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 756
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 757 CDLCSKELSHKSSLTEHMKLH 777
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
C + FSR + LTRH+++H G + ++C +C + S LT H++ H G
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 728 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 783
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 784 CD 785
CD
Sbjct: 65 CD 66
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 242 YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 297
Y C + C + FS + LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 298 CDLCSKELSHKSSLTEHMKLH 318
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 900 YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 955
Y C C + FS + LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 956 CDLCSKELSHKSSLTEHMKLH 976
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 161 YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 216
Y C + C + FS + LT H+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 217 CDLCSKDFSCKKHLTRHMKLH 237
CD+C + F+ RH K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKE 331
C + FSR + LTRH+++H G + ++C +C + S LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 LSHKSSLTEHMKLH 345
+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 188 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 243
Y C + C + FS LTRH+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 244 CDLCSKEFSCKSYLTGHIKLH 264
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCV 930
C + C + F+ + LT +++H G + ++C C + FS +LT HI+ H G K C
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 931 LCSKEFSRKSHLTRHMKLH 949
+C ++F+R RH K+H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 107 YKCDLHS--KEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 162
Y C + S + FS LT H ++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CDLCSKEFSCKSYLTEHMKLH 183
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 296 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 351
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 352 CDLCSKELSHKSSLTEHMKLH 372
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 323 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 378
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 379 CDLCSKELSHKSSLTEHMKLH 399
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 350 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 405
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 406 CDLCSKELSHKSSLTEHMKLH 426
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 377 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 432
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 433 CDLCSKELSHKSSLTEHMKLH 453
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 404 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 459
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 460 CDLCSKELSHKSSLTEHMKLH 480
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 431 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 486
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 487 CDLCSKELSHKSSLTEHMKLH 507
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 458 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 513
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 514 CDLCSKELSHKSSLTEHMKLH 534
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 485 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 540
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 541 CDLCSKELSHKSSLTEHMKLH 561
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 512 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 567
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 568 CDLCSKELSHKSSLTEHMKLH 588
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 539 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 594
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 595 CDLCSKELSHKSSLTEHMKLH 615
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 566 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 621
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 622 CDLCSKELSHKSSLTEHMKLH 642
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 593 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 648
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 649 CDLCSKELSHKSSLTEHMKLH 669
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 620 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 675
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 676 CDLCSKELSHKSSLTEHMKLH 696
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 647 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 702
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 703 CDLCSKELSHKSSLTEHMKLH 723
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 674 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 729
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 730 CDLCSKELSHKSSLTEHMKLH 750
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 701 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 756
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 757 CDLCSKELSHKSSLTEHMKLH 777
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
C + FSR + LTRH+++H G + ++C +C + S LT H++ H G
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 728 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 783
Y C + C + S + LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 784 CD 785
CD
Sbjct: 65 CD 66
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 242 YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 297
Y C + C + FS LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 298 CDLCSKELSHKSSLTEHMKLH 318
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 161 YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 216
Y C + C + FS LT H+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 217 CDLCSKDFSCKKHLTRHMKLH 237
CD+C + F+ RH K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 900 YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 955
Y C C + FS LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 956 CDLCSKELSHKSSLTEHMKLH 976
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 188 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 243
Y C + C + FS LTRH+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 244 CDLCSKEFSCKSYLTGHIKLH 264
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCV 930
C + C + F+ SLT +++H G + ++C C + FS +LT HI+ H G K C
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 931 LCSKEFSRKSHLTRHMKLH 949
+C ++F+R RH K+H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKE 331
C + FS+ LTRH+++H G + ++C +C + S LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 LSHKSSLTEHMKLH 345
+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 107 YKCDLHS--KEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 162
Y C + S + FS +LT H ++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CDLCSKEFSCKSYLTEHMKLH 183
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 296 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 351
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 352 CDLCSKELSHKSSLTEHMKLH 372
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 323 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 378
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 379 CDLCSKELSHKSSLTEHMKLH 399
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 350 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 405
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 406 CDLCSKELSHKSSLTEHMKLH 426
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 377 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 432
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 433 CDLCSKELSHKSSLTEHMKLH 453
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 404 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 459
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 460 CDLCSKELSHKSSLTEHMKLH 480
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 431 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 486
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 487 CDLCSKELSHKSSLTEHMKLH 507
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 458 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 513
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 514 CDLCSKELSHKSSLTEHMKLH 534
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 485 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 540
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 541 CDLCSKELSHKSSLTEHMKLH 561
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 512 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 567
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 568 CDLCSKELSHKSSLTEHMKLH 588
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 539 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 594
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 595 CDLCSKELSHKSSLTEHMKLH 615
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 566 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 621
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 622 CDLCSKELSHKSSLTEHMKLH 642
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 593 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 648
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 649 CDLCSKELSHKSSLTEHMKLH 669
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 620 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 675
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 676 CDLCSKELSHKSSLTEHMKLH 696
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 647 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 702
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 703 CDLCSKELSHKSSLTEHMKLH 723
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 674 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 729
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 730 CDLCSKELSHKSSLTEHMKLH 750
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 701 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 756
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 757 CDLCSKELSHKSSLTEHMKLH 777
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 728 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 783
Y C + C + S SLT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 784 CD 785
CD
Sbjct: 65 CD 66
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
C + FS+ LTRH+++H G + ++C +C + S LT H++ H G
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 242 YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 297
Y C + C + FS LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 298 CDLCSKELSHKSSLTEHMKLH 318
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 900 YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 955
Y C C + FS LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 956 CDLCSKELSHKSSLTEHMKLH 976
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 161 YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 216
Y C + C + FS LT H+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 217 CDLCSKDFSCKKHLTRHMKLH 237
CD+C + F+ RH K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 188 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 243
Y C + C + FS LTRH+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 244 CDLCSKEFSCKSYLTGHIKLH 264
CD+C ++F+ H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKE 331
C + FSR LTRH+++H G + ++C +C + S LT H++ H G + + CD+C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 332 LSHKSSLTEHMKLH 345
+ H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCV 930
C + C + F+ LT +++H G + ++C C + FS +LT HI+ H G K C
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 931 LCSKEFSRKSHLTRHMKLH 949
+C ++F+R RH K+H
Sbjct: 66 ICGRKFARSDERKRHTKIH 84
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 107 YKCDLHS--KEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 162
Y C + S + FS LT H ++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 163 CDLCSKEFSCKSYLTEHMKLH 183
CD+C ++F+ H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 296 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 351
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 352 CDLCSKELSHKSSLTEHMKLH 372
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 323 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 378
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 379 CDLCSKELSHKSSLTEHMKLH 399
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 350 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 405
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 406 CDLCSKELSHKSSLTEHMKLH 426
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 377 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 432
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 433 CDLCSKELSHKSSLTEHMKLH 453
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 404 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 459
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 460 CDLCSKELSHKSSLTEHMKLH 480
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 431 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 486
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 487 CDLCSKELSHKSSLTEHMKLH 507
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 458 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 513
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 514 CDLCSKELSHKSSLTEHMKLH 534
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 485 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 540
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 541 CDLCSKELSHKSSLTEHMKLH 561
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 512 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 567
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 568 CDLCSKELSHKSSLTEHMKLH 588
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 539 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 594
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 595 CDLCSKELSHKSSLTEHMKLH 615
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 566 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 621
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 622 CDLCSKELSHKSSLTEHMKLH 642
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 593 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 648
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 649 CDLCSKELSHKSSLTEHMKLH 669
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 620 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 675
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 676 CDLCSKELSHKSSLTEHMKLH 696
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 647 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 702
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 703 CDLCSKELSHKSSLTEHMKLH 723
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 674 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 729
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 730 CDLCSKELSHKSSLTEHMKLH 750
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 701 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 756
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 757 CDLCSKELSHKSSLTEHMKLH 777
CD+C ++ + H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
C + FSR LTRH+++H G + ++C +C + S LT H++ H G
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 58
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 728 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 783
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 784 CD 785
CD
Sbjct: 64 CD 65
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 242 YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 297
Y C + C + FS LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 298 CDLCSKELSHKSSLTEHMKLH 318
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 900 YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 955
Y C C + FS LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 956 CDLCSKELSHKSSLTEHMKLH 976
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 161 YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 216
Y C + C + FS LT H+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 217 CDLCSKDFSCKKHLTRHMKLH 237
CD+C + F+ RH K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 188 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 243
Y C + C + FS LTRH+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 244 CDLCSKEFSCKSYLTGHIKLH 264
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKE 331
C + FSR LTRH+++H G + ++C +C + S LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 LSHKSSLTEHMKLH 345
+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCV 930
C + C + F+ LT +++H G + ++C C + FS +LT HI+ H G K C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 931 LCSKEFSRKSHLTRHMKLH 949
+C ++F+R RH K+H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 107 YKCDLHS--KEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 162
Y C + S + FS LT H ++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CDLCSKEFSCKSYLTEHMKLH 183
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 296 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 351
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 352 CDLCSKELSHKSSLTEHMKLH 372
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 323 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 378
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 379 CDLCSKELSHKSSLTEHMKLH 399
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 350 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 405
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 406 CDLCSKELSHKSSLTEHMKLH 426
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 377 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 432
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 433 CDLCSKELSHKSSLTEHMKLH 453
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 404 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 459
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 460 CDLCSKELSHKSSLTEHMKLH 480
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 431 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 486
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 487 CDLCSKELSHKSSLTEHMKLH 507
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 458 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 513
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 514 CDLCSKELSHKSSLTEHMKLH 534
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 485 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 540
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 541 CDLCSKELSHKSSLTEHMKLH 561
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 512 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 567
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 568 CDLCSKELSHKSSLTEHMKLH 588
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 539 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 594
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 595 CDLCSKELSHKSSLTEHMKLH 615
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 566 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 621
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 622 CDLCSKELSHKSSLTEHMKLH 642
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 593 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 648
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 649 CDLCSKELSHKSSLTEHMKLH 669
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 620 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 675
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 676 CDLCSKELSHKSSLTEHMKLH 696
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 647 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 702
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 703 CDLCSKELSHKSSLTEHMKLH 723
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 674 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 729
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 730 CDLCSKELSHKSSLTEHMKLH 750
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 701 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 756
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 757 CDLCSKELSHKSSLTEHMKLH 777
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
C + FSR LTRH+++H G + ++C +C + S LT H++ H G
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 728 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 783
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 784 CD 785
CD
Sbjct: 65 CD 66
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 242 YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 297
Y C + C + FS LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 298 CDLCSKELSHKSSLTEHMKLH 318
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 900 YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 955
Y C C + FS LT HI++H G K +C +C + FSR HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 956 CDLCSKELSHKSSLTEHMKLH 976
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 161 YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 216
Y C + C + FS LT H+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 217 CDLCSKDFSCKKHLTRHMKLH 237
CD+C + F+ RH K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 188 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 243
Y C + C + FS LTRH+++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 244 CDLCSKEFSCKSYLTGHIKLH 264
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKE 331
C + FSR LTRH+++H G + ++C +C + S LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 LSHKSSLTEHMKLH 345
+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCV 930
C + C + F+ LT +++H G + ++C C + FS +LT HI+ H G K C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 931 LCSKEFSRKSHLTRHMKLH 949
+C ++F+R RH K+H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 107 YKCDLHS--KEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 162
Y C + S + FS LT H ++H G + ++C +C ++FS HLT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CDLCSKEFSCKSYLTEHMKLH 183
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 296 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 351
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 352 CDLCSKELSHKSSLTEHMKLH 372
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 323 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 378
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 379 CDLCSKELSHKSSLTEHMKLH 399
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 350 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 405
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 406 CDLCSKELSHKSSLTEHMKLH 426
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 377 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 432
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 433 CDLCSKELSHKSSLTEHMKLH 453
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 404 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 459
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 460 CDLCSKELSHKSSLTEHMKLH 480
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 431 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 486
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 487 CDLCSKELSHKSSLTEHMKLH 507
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 458 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 513
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 514 CDLCSKELSHKSSLTEHMKLH 534
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 485 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 540
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 541 CDLCSKELSHKSSLTEHMKLH 561
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 512 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 567
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 568 CDLCSKELSHKSSLTEHMKLH 588
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 539 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 594
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 595 CDLCSKELSHKSSLTEHMKLH 615
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 566 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 621
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 622 CDLCSKELSHKSSLTEHMKLH 642
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 593 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 648
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 649 CDLCSKELSHKSSLTEHMKLH 669
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 620 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 675
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 676 CDLCSKELSHKSSLTEHMKLH 696
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 647 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 702
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 703 CDLCSKELSHKSSLTEHMKLH 723
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 674 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 729
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 730 CDLCSKELSHKSSLTEHMKLH 750
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 701 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 756
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 757 CDLCSKELSHKSSLTEHMKLH 777
CD+C ++ + H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
C + FSR LTRH+++H G + ++C +C + S LT H++ H G
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 728 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 783
Y C + C + S LT H+++H G + ++C +C + S LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 784 CD 785
CD
Sbjct: 65 CD 66
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKE 331
C + FS+K++L H+++H G + ++C +C + S ++SL H++ H G + + CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 332 LSHKSSLTEHMKLH 345
+ + T H K+H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 161 YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 216
Y C + C + FS K+ L H+++H G + ++C +C ++FS + L H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 217 CDLCSKDFSCKKHLTRHMKLH 237
CD+C + F+ TRH K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 296 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 351
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 352 CDLCSKELSHKSSLTEHMKLH 372
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 323 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 378
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 379 CDLCSKELSHKSSLTEHMKLH 399
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 350 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 405
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 406 CDLCSKELSHKSSLTEHMKLH 426
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 377 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 432
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 433 CDLCSKELSHKSSLTEHMKLH 453
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 404 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 459
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 460 CDLCSKELSHKSSLTEHMKLH 480
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 431 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 486
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 487 CDLCSKELSHKSSLTEHMKLH 507
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 458 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 513
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 514 CDLCSKELSHKSSLTEHMKLH 534
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 485 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 540
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 541 CDLCSKELSHKSSLTEHMKLH 561
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 512 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 567
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 568 CDLCSKELSHKSSLTEHMKLH 588
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 539 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 594
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 595 CDLCSKELSHKSSLTEHMKLH 615
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 566 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 621
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 622 CDLCSKELSHKSSLTEHMKLH 642
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 593 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 648
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 649 CDLCSKELSHKSSLTEHMKLH 669
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 620 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 675
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 676 CDLCSKELSHKSSLTEHMKLH 696
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 647 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 702
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 703 CDLCSKELSHKSSLTEHMKLH 723
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 674 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 729
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 730 CDLCSKELSHKSSLTEHMKLH 750
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 701 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 756
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 757 CDLCSKELSHKSSLTEHMKLH 777
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 134 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLHQGVR-YK 189
Y C + C + FS K +L H+++H G + ++C +C + FS ++ L H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 190 CDLCSKDFSCKKHLTRHMKLH 210
CD+C + F+ TRH K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 242 YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 297
Y C + C + FS K+ L HI++H G K +C +C + FS+++ L H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 298 CDLCSKELSHKSSLTEHMKLH 318
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 900 YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 955
Y C C + FS K+ L HI++H G K +C +C + FS+++ L H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 956 CDLCSKELSHKSSLTEHMKLH 976
CD+C ++ + + T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 215 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLHQGIKN-K 270
Y C + C + FS K +L H+++H G + ++C +C + FS ++ L HI+ H G K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 271 CVLCSKEFSRKSHLTRHMKLH 291
C +C ++F+ TRH K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCV 930
C + C + F+ K++L +++H G + ++C C + FS ++ L HI+ H G K C
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACD 66
Query: 931 LCSKEFSRKSHLTRHMKLH 949
+C ++F+ TRH K+H
Sbjct: 67 ICGRKFATLHTRTRHTKIH 85
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 728 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 783
Y C + C + S K++L H+++H G + ++C +C + S ++SL H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 784 CD 785
CD
Sbjct: 65 CD 66
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
C + FS+K++L H+++H G + ++C +C + S ++SL H++ H G
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 107 YKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLH 156
++C + + FS + +L H + H G + + CD+C + F+ TRH K+H
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 271 CVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLC 328
C +C K F R S L+ H+ +H R Y C C K KS + +H +H G + +KC +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 329 SKELSHKSSLTEHMKLHQG 347
K S S+L H + H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 353
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 354 LCSKELSHKSSLTEHMKLHQG 374
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 380
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 381 LCSKELSHKSSLTEHMKLHQG 401
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 407
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 408 LCSKELSHKSSLTEHMKLHQG 428
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 434
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 435 LCSKELSHKSSLTEHMKLHQG 455
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 461
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 462 LCSKELSHKSSLTEHMKLHQG 482
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 488
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 489 LCSKELSHKSSLTEHMKLHQG 509
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 515
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 516 LCSKELSHKSSLTEHMKLHQG 536
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 542
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 543 LCSKELSHKSSLTEHMKLHQG 563
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 569
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 570 LCSKELSHKSSLTEHMKLHQG 590
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 596
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 597 LCSKELSHKSSLTEHMKLHQG 617
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 623
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 624 LCSKELSHKSSLTEHMKLHQG 644
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 650
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 651 LCSKELSHKSSLTEHMKLHQG 671
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 677
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 678 LCSKELSHKSSLTEHMKLHQG 698
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 704
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 705 LCSKELSHKSSLTEHMKLHQG 725
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 731
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 732 LCSKELSHKSSLTEHMKLHQG 752
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 758
+ C +C K S+L+ H+ +H R Y C C K KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 759 LCSKELSHKSSLTEHMKLHQG 779
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 875 CDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIK-NKCVLC 932
C +C K F S+L+ + +H R Y C +C K F KS + H +H G K +KC +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 933 SKEFSRKSHLTRHMKLHQG 951
K FS+ S+L H + H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLHQGIK-NKCV 272
+ C +C K F L+ H+ +H R Y C C K F KS + H +H G K +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 273 LCSKEFSRKSHLTRHMKLHQG 293
+C K FS+ S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLHQGVR-YKCD 191
+ C +C K F L+ H+ +H R Y C C K F KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 192 LCSKDFSCKKHLTRHMKLHQG 212
+C K FS +L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCD 957
+ C C K F S L+ H+ +H + C C K F +KS + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 958 LCSKELSHKSSLTEHMKLHQG 978
+C K S S+L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCD 245
+ C +C K F L+ H+ +H R Y C C K F K + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 246 LCSKEFSCKSYLTGHIKLHQG 266
+C K FS S L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 107 YKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCD 164
+ C + K F TL+ H +H R Y C C K F K + +H +H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 165 LCSKEFSCKSYLTEHMKLHQG 185
+C K FS S L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 214 RYKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLHQG 266
RYKCD C K FS L++H + H G + YKCD C K F +S+L GH ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 295 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 347
RYKCD C K SH S L++H + H G + YKCD C K +S L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 349 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 401
RYKCD C K SH S L++H + H G + YKCD C K +S L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 403 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 455
RYKCD C K SH S L++H + H G + YKCD C K +S L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 457 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 509
RYKCD C K SH S L++H + H G + YKCD C K +S L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 511 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 563
RYKCD C K SH S L++H + H G + YKCD C K +S L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 565 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 617
RYKCD C K SH S L++H + H G + YKCD C K +S L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 619 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 671
RYKCD C K SH S L++H + H G + YKCD C K +S L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 673 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 725
RYKCD C K SH S L++H + H G + YKCD C K +S L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 727 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 779
RYKCD C K SH S L++H + H G + YKCD C K +S L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 160 RYKCDLCSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQG 212
RYKCD C K FS S L++H + H G + YKCD C K F + HL H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 133 RYKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLHQG 185
RYKCD C K FS L++H + H G + YKCD C K F +S+L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 872 RCKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQG 924
R KCD C K F+H S L++ + H G + YKCD C K F +S+L GH ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 241 RYKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQG 293
RYKCD C K FS S L+ H + H G K KC C K F ++SHL H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 107 YKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQG 158
YKCD K FS+ L++HR+ H G + YKCD C K F + HL H ++H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 899 RYKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQG 951
RYKCD C K FS S L+ H + H G K KC C K F ++SHL H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
KC C K FS S L++H + H G + YKCD C K +S L H ++H G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 953 RYKCDLCSKELSHKSSLTEHMKLHQG 978
RYKCD C K SH S L++H + H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTG 43
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 161 YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 216
Y C + C + FS K+ L H+++H G + ++C +C ++FS L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 217 CDLCSKDFSCKKHLTRHMKLH 237
CD+C + F+ RH K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 134 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLHQGVR-YK 189
Y C + C + FS K +L H+++H G + ++C +C + FS + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 190 CDLCSKDFSCKKHLTRHMKLH 210
CD+C + F+ RH K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 242 YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 297
Y C + C + FS K+ L HI++H G K +C +C + FS+ + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 298 CDLCSKELSHKSSLTEHMKLH 318
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKE 331
C + FS+K++L H+++H G + ++C +C + S + L +H++ H G + + CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 332 LSHKSSLTEHMKLH 345
+ + H K+H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 296 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 351
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 352 CDLCSKELSHKSSLTEHMKLH 372
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 323 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 378
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 379 CDLCSKELSHKSSLTEHMKLH 399
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 350 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 405
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 406 CDLCSKELSHKSSLTEHMKLH 426
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 377 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 432
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 433 CDLCSKELSHKSSLTEHMKLH 453
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 404 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 459
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 460 CDLCSKELSHKSSLTEHMKLH 480
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 431 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 486
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 487 CDLCSKELSHKSSLTEHMKLH 507
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 458 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 513
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 514 CDLCSKELSHKSSLTEHMKLH 534
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 485 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 540
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 541 CDLCSKELSHKSSLTEHMKLH 561
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 512 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 567
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 568 CDLCSKELSHKSSLTEHMKLH 588
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 539 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 594
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 595 CDLCSKELSHKSSLTEHMKLH 615
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 566 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 621
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 622 CDLCSKELSHKSSLTEHMKLH 642
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 593 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 648
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 649 CDLCSKELSHKSSLTEHMKLH 669
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 620 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 675
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 676 CDLCSKELSHKSSLTEHMKLH 696
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 647 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 702
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 703 CDLCSKELSHKSSLTEHMKLH 723
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 674 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 729
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 730 CDLCSKELSHKSSLTEHMKLH 750
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 701 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 756
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 757 CDLCSKELSHKSSLTEHMKLH 777
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 900 YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 955
Y C C + FS K+ L HI++H G K +C +C + FS+ + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 956 CDLCSKELSHKSSLTEHMKLH 976
CD+C ++ + + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 215 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLHQGIKN-K 270
Y C + C + FS K +L H+++H G + ++C +C + FS + L HI+ H G K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 271 CVLCSKEFSRKSHLTRHMKLH 291
C +C ++F+ RH K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCV 930
C + C + F+ K++L +++H G + ++C C + FS + L HI+ H G K C
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 931 LCSKEFSRKSHLTRHMKLH 949
+C ++F+ RH K+H
Sbjct: 67 ICGRKFATLHTRDRHTKIH 85
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 728 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YK 783
Y C + C + S K++L H+++H G + ++C +C + S + L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 784 CD 785
CD
Sbjct: 65 CD 66
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
C + FS+K++L H+++H G + ++C +C + S + L +H++ H G
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 107 YKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLH 156
++C + + FS L +H + H G + + CD+C + F+ RH K+H
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 902 CDF--CSKEFSCKSYLTGHIKLHQGIKN-KCVL--CSKEFSRKSHLTRHMKLHQGVR-YK 955
CD+ C+K ++ S+L H++ H G K KC C F+R LTRH + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 956 CDLCSKELSHKSSLTEHMKLHQ 977
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 163 CDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YK 216
CD C+K ++ S+L H++ H G + YKC C F+ LTRH + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 217 CDLCSKDFSCKKHLTRHMKLHQ 238
C +C++ FS HL HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 217 CDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-K 270
CD C+K ++ HL H++ H G + YKC C F+ LT H + H G K +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 271 CVLCSKEFSRKSHLTRHMKLHQ 292
C +C++ FSR HL HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 244 CDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVL--CSKEFSRKSHLTRHMKLHQGVR-YK 297
CD C+K ++ S+L H++ H G K KC C F+R LTRH + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 298 CDLCSKELSHKSSLTEHMKLHQ 319
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-K 928
C C+K +T S L ++ H G + YKC + C F+ LT H + H G K +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 929 CVLCSKEFSRKSHLTRHMKLHQ 950
C +C++ FSR HL HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 124 EHRKLHQGIRYKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKEFSCKSYLTE 178
E R++H CD C+K ++ HL H++ H G + YKC C F+ LT
Sbjct: 11 EKRRIHY-----CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTR 65
Query: 179 HMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQ 211
H + H G + ++C +C++ FS HL HMK HQ
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 329
C+K +++ SHL H++ H G + YKC C + LT H + H G + ++C +C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 330 KELSHKSSLTEHMKLHQ 346
+ S L HMK HQ
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 298 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 351
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 352 CDLCSKELSHKSSLTEHMKLHQ 373
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 325 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 378
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 379 CDLCSKELSHKSSLTEHMKLHQ 400
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 352 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 405
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 406 CDLCSKELSHKSSLTEHMKLHQ 427
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 379 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 432
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 433 CDLCSKELSHKSSLTEHMKLHQ 454
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 406 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 459
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 460 CDLCSKELSHKSSLTEHMKLHQ 481
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 433 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 486
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 487 CDLCSKELSHKSSLTEHMKLHQ 508
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 460 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 513
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 514 CDLCSKELSHKSSLTEHMKLHQ 535
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 487 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 540
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 541 CDLCSKELSHKSSLTEHMKLHQ 562
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 514 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 567
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 568 CDLCSKELSHKSSLTEHMKLHQ 589
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 541 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 594
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 595 CDLCSKELSHKSSLTEHMKLHQ 616
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 568 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 621
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 622 CDLCSKELSHKSSLTEHMKLHQ 643
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 595 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 648
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 649 CDLCSKELSHKSSLTEHMKLHQ 670
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 622 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 675
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 676 CDLCSKELSHKSSLTEHMKLHQ 697
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 649 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 702
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 703 CDLCSKELSHKSSLTEHMKLHQ 724
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 676 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 729
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 730 CDLCSKELSHKSSLTEHMKLHQ 751
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 703 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 756
CD C+K + S L H++ H G + YKC C + LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 757 CDLCSKELSHKSSLTEHMKLHQ 778
C +C++ S L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 14/60 (23%)
Query: 112 HSKEFSYKCT-------------LTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQ 157
H+ E YKCT LT H + H G + ++C +C++ FS HL HMK HQ
Sbjct: 40 HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 28/130 (21%)
Query: 166 CSKEFSCKSYLTEHMKLHQGVR-YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCS 221
C+K + S+L H + H G + Y+CD C + FS L RH + H GV+ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 222 KDFSCKKHLTRHMKLHQGVRYKCDLCSKEFSCKSYLTGHIKLHQGIKNKCVLCSKEFSRK 281
+ FS HL H + H G K FSC + C K+F+R
Sbjct: 74 RKFSRSDHLKTHTRTHTG--------EKPFSC----------------RWPSCQKKFARS 109
Query: 282 SHLTRHMKLH 291
L RH +H
Sbjct: 110 DELVRHHNMH 119
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 220 CSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCS 275
C+K + HL H + H G + Y+CD C + FS L H + H G+K +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 276 KEFSRKSHLTRHMKLHQGVR-YKCDL--CSKELSHKSSLTEHMKLH 318
++FSR HL H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 139 CSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDLCS 194
C+K + HL H + H G + Y+CD C + FS L H + H GV+ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 195 KDFSCKKHLTRHMKLHQGVR-YKCDL--CSKDFSCKKHLTRHMKLH 237
+ FS HL H + H G + + C C K F+ L RH +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-K 928
C C+K + S L + H G + Y+CDF C + FS L H + H G+K +
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 929 CVLCSKEFSRKSHLTRHMKLHQGVR-YKCDL--CSKELSHKSSLTEHMKLH 976
C C ++FSR HL H + H G + + C C K+ + L H +H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 329
C+K + + SHL H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 330 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 372
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 247 CSKEFSCKSYLTGHIKLHQGIKN-KCVL--CSKEFSRKSHLTRHMKLHQGVR-YKCDLCS 302
C+K + S+L H + H G K +C C + FSR L RH + H GV+ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 303 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 345
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 301 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 356
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 357 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 399
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 328 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 383
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 384 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 426
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 355 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 410
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 411 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 453
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 382 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 437
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 438 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 480
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 409 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 464
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 465 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 507
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 436 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 491
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 492 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 534
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 463 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 518
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 519 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 561
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 490 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 545
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 546 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 588
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 517 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 572
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 573 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 615
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 544 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 599
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 600 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 642
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 571 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 626
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 627 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 669
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 598 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 653
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 654 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 696
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 625 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 680
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 681 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 723
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 652 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 707
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 708 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 750
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 679 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 734
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 735 KELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLH 777
++ S L H + H G + + C C K+ + L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 905 CSKEFSCKSYLTGHIKLHQGIKN-KCVL--CSKEFSRKSHLTRHMKLHQGVR-YKCDLCS 960
C+K + S+L H + H G K +C C + FSR L RH + H GV+ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 961 KELSHKSSLTEHMKLHQG 978
++ S L H + H G
Sbjct: 74 RKFSRSDHLKTHTRTHTG 91
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 706 CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 761
C+K S L H + H G + Y+CD C + S L H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 762 KELSHKSSLTEHMKLHQG 779
++ S L H + H G
Sbjct: 74 RKFSRSDHLKTHTRTHTG 91
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 107 YKCDLHS--KEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YK 162
Y+CD + FS L H++ H G++ ++C C + FS HL H + H G + +
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 163 CDL--CSKEFSCKSYLTEHMKLH 183
C C K+F+ L H +H
Sbjct: 97 CRWPSCQKKFARSDELVRHHNMH 119
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 166 CSKEFSCKSYLTEHMKLHQGVRYKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSK 222
C+K F S + +H+ H + C C K F L RH +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 223 DFSCKKHLTRHMKLHQGVR-YKC--DLCSKEFSCKSYLTGHIKLHQGIKN 269
FS +L H+++H G R Y C D C+K+F+ + L HI H KN
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 247 CSKEFSCKSYLTGHIKLHQGIKNKCVLCSKEFSRKSHLTRHMKLHQGVR-YKCDL--CSK 303
C+K F S + H+ H + C C K F S L RH +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 304 ELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLH 345
S +L H+++H G R Y C D C+K+ + ++L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 301 CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDL--CSK 357
C+K S++ +H+ H + C C K S L H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 358 ELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLH 399
S +L H+++H G R Y C D C+K+ + ++L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 355 CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDL--CSK 411
C+K S++ +H+ H + C C K S L H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 412 ELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLH 453
S +L H+++H G R Y C D C+K+ + ++L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 409 CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDL--CSK 465
C+K S++ +H+ H + C C K S L H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 466 ELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLH 507
S +L H+++H G R Y C D C+K+ + ++L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 463 CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDL--CSK 519
C+K S++ +H+ H + C C K S L H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 520 ELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLH 561
S +L H+++H G R Y C D C+K+ + ++L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 517 CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDL--CSK 573
C+K S++ +H+ H + C C K S L H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 574 ELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLH 615
S +L H+++H G R Y C D C+K+ + ++L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 571 CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDL--CSK 627
C+K S++ +H+ H + C C K S L H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 628 ELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLH 669
S +L H+++H G R Y C D C+K+ + ++L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 625 CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDL--CSK 681
C+K S++ +H+ H + C C K S L H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 682 ELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLH 723
S +L H+++H G R Y C D C+K+ + ++L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 679 CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDL--CSK 735
C+K S++ +H+ H + C C K S L H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 736 ELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLH 777
S +L H+++H G R Y C D C+K+ + ++L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 871 IRCKCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSKEFSCKSYLTGHIKLHQGIKN-KC 929
I C C+K F S++ + + H + C C K F S L H +H G K +C
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 930 VL--CSKEFSRKSHLTRHMKLHQGVR-YKC--DLCSKELSHKSSLTEHMKLH 976
C K FS +L H+++H G R Y C D C+K+ + ++L H+ H
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 139 CSKDFSCKKHLTRHMKLHQGVRYKCDLCSKEFSCKSYLTEHMKLHQGVR-YKCDL--CSK 195
C+K F + +H+ H + C C K F S L H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 196 DFSCKKHLTRHMKLHQGVR-YKC--DLCSKDFSCKKHLTRHMKLH 237
FS +L H+++H G R Y C D C+K F+ +L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 113 SKEFSYKCTLTEHRKLHQGIRYKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKE 169
+K F + +H H + C C K F L RH +H G + ++C C K
Sbjct: 14 TKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR 73
Query: 170 FSCKSYLTEHMKLHQGVR-YKC--DLCSKDFSCKKHLTRHMKLH 210
FS L H+++H G R Y C D C+K F+ +L H+ H
Sbjct: 74 FSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 905 CSKEFSCKSYLTGHIKLHQGIKNKCVLCSKEFSRKSHLTRHMKLHQGVR-YKCDL--CSK 961
C+K F S + H+ H + C C K F S L RH +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 962 ELSHKSSLTEHMKLHQG-RTY 981
S +L H+++H G R Y
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPY 93
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 706 CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDL--CSK 762
C+K S++ +H+ H + C C K S L H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 763 ELSHKSSLTEHMKLHQGIR-YKCD 785
S +L H+++H G R Y C
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCP 96
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 871 IRCKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDF--CSKEFSCKSYLTGHIKLHQGIKN 927
+C + C K F+ +L +++H G R Y C F C+K+F+ + L HI H KN
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 217 CDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLHQGIKNK---CV 272
C++C K F HL RH H G + Y C +C F K ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 273 LCSKEFSRKSHLTRHMK-LHQG 293
C K FSR HL H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 190 CDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGV---RYKCD 245
C++C K F HL RH H G + Y C +C F K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 246 LCSKEFSCKSYLTGHIK-LHQG 266
C K FS +L GHIK +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 136 CDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLHQGV---RYKCD 191
C++C K F HL RH H G + Y C +C F K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 192 LCSKDFSCKKHLTRHMK-LHQG 212
C K FS HL H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 163 CDLCSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGV---RYKCD 218
C++C K F +L H H G + Y C +C F K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 219 LCSKDFSCKKHLTRHMK-LHQG 239
C K FS HL H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 271 CVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 326
C +C K F HL RH H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 327 LCSKELSHKSSLTEHMK-LHQG 347
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 875 CDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKNK---CV 930
C++C K F L H G + Y C C F K ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 931 LCSKEFSRKSHLTRHMK-LHQG 951
C K FSR HL H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 244 CDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGV---RYKCD 299
C++C K F +L H H G K C +C F RK ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 300 LCSKELSHKSSLTEHMK-LHQG 320
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 902 CDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGV---RYKCD 957
C+ C K F +L H H G K C +C F RK ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 958 LCSKELSHKSSLTEHMK-LHQGRT 980
C K S L H+K +H G +
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 106 GYKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGV---RY 161
G C++ K F L H+ H G + Y C +C F K ++ H++ H G Y
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 162 KCDLCSKEFSCKSYLTEHMK-LHQG 185
C C K FS +L H+K +H G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 298 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 353
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 354 LCSKELSHKSSLTEHMK-LHQG 374
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 325 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 380
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 381 LCSKELSHKSSLTEHMK-LHQG 401
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 352 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 407
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 408 LCSKELSHKSSLTEHMK-LHQG 428
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 379 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 434
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 435 LCSKELSHKSSLTEHMK-LHQG 455
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 406 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 461
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 462 LCSKELSHKSSLTEHMK-LHQG 482
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 433 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 488
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 489 LCSKELSHKSSLTEHMK-LHQG 509
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 460 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 515
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 516 LCSKELSHKSSLTEHMK-LHQG 536
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 487 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 542
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 543 LCSKELSHKSSLTEHMK-LHQG 563
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 514 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 569
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 570 LCSKELSHKSSLTEHMK-LHQG 590
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 541 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 596
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 597 LCSKELSHKSSLTEHMK-LHQG 617
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 568 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 623
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 624 LCSKELSHKSSLTEHMK-LHQG 644
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 595 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 650
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 651 LCSKELSHKSSLTEHMK-LHQG 671
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 622 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 677
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 678 LCSKELSHKSSLTEHMK-LHQG 698
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 649 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 704
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 705 LCSKELSHKSSLTEHMK-LHQG 725
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 676 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 731
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 732 LCSKELSHKSSLTEHMK-LHQG 752
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 703 CDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCD 758
C++C K L H H G + Y C +C K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 759 LCSKELSHKSSLTEHMK-LHQG 779
C K S L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 243 KCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRH-----MKLHQGVRY 296
+C C K+F K YL H + H G K +C C K + RK +L H M + V +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 297 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 347
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 162 KCDLCSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRH-----MKLHQGVRY 215
+C C K+F K YL H + H G + ++C C K + K++L H M + V +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 216 KCDLCSKDFSCKKHLTRHMKLHQG-VRYKCDLCSKEFSCKSYLTGH-IKLHQG 266
C +C + F + L HM H G + YKC CS++F K L H IKLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 135 KCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEH-----MKLHQGVRY 188
+C C K F K +L H + H G + ++C C K + K L EH M + V +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 189 KCDLCSKDFSCKKHLTRHMKLHQG-VRYKCDLCSKDFSCKKHLTRHM-KLHQG 239
C +C + F + L HM H G + YKC CS+ F KK L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 323
+C C K+F K +L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 324 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 374
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 297 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 350
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 351 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 401
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 324 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 377
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 378 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 428
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 351 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 404
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 405 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 455
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 378 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 431
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 432 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 482
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 405 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 458
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 459 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 509
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 432 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 485
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 486 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 536
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 459 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 512
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 513 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 563
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 486 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 539
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 540 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 590
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 513 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 566
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 567 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 617
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 540 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 593
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 594 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 644
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 567 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 620
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 621 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 671
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 594 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 647
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 648 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 698
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 621 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 674
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 675 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 725
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 648 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 701
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 702 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 752
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 675 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH-----MKLHQGIRY 728
+C C K+ K L H + H G + ++C C K K +L EH M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 729 KCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHM-KLHQG 779
C +C + + L HM H G + YKC CS++ K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 106 GYKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRH-----MKLHQGV 159
G +C K+F K L H + H G + ++C C K + K++L H M + V
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 160 RYKCDLCSKEFSCKSYLTEHMKLHQG-VRYKCDLCSKDFSCKKHLTRHM-KLHQG 212
+ C +C + F + L HM H G + YKC CS+ F KK L HM KLH G
Sbjct: 67 -FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 874 KCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKNK---- 928
+C C K+F K L + H G + ++C C K + K L H + +++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 929 CVLCSKEFSRKSHLTRHMKLHQG-VRYKCDLCSKELSHKSSLTEHM-KLHQGRT 980
C +C + F R+ L HM H G + YKC CS++ K L HM KLH G +
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 186 VRYKCDLCSKDFSCKKHLTRHMKLHQGV-RYKCDLCSKDFSCKKHLTRHMKLHQG-VRYK 243
V Y C +C + + C L RH +H +Y C C K F ++ T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 244 CDLCSKEFSCKSYLTGHIK 262
C C K F +++ HIK
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 132 IRYKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLHQG-VRYK 189
+ Y C +C + + C L RH +H + Y C C K F Y T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 190 CDLCSKDFSCKKHLTRHMK 208
C C K F + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 240 VRYKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQG-VRYK 297
V Y C +C + + C + L H +H K C C K F + T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 298 CDLCSKELSHKSSLTEHMK 316
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 898 IRYKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQG-VRYK 955
+ Y C C + + C + L H +H K C C K F + T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 956 CDLCSKELSHKSSLTEHMK 974
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 875 CDLCSKEFTHKSSLTEDMKLHQG-IRYKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLC 932
C +C + + +SL +H +Y C +C K F Y T H H G + +C+ C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 933 SKEFSRKSHLTRHMK 947
K F ++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 271 CVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLC 328
C++C + + + L RH +H + Y C C K T+H H G RY+C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 329 SKELSHKSSLTEHMK 343
K + ++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 294 VRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 351
V Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 352 CDLCSKELSHKSSLTEHMK 370
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 321 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 378
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 379 CDLCSKELSHKSSLTEHMK 397
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 348 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 405
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 406 CDLCSKELSHKSSLTEHMK 424
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 375 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 432
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 433 CDLCSKELSHKSSLTEHMK 451
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 402 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 459
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 460 CDLCSKELSHKSSLTEHMK 478
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 429 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 486
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 487 CDLCSKELSHKSSLTEHMK 505
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 456 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 513
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 514 CDLCSKELSHKSSLTEHMK 532
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 483 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 540
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 541 CDLCSKELSHKSSLTEHMK 559
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 510 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 567
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 568 CDLCSKELSHKSSLTEHMK 586
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 537 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 594
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 595 CDLCSKELSHKSSLTEHMK 613
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 564 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 621
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 622 CDLCSKELSHKSSLTEHMK 640
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 591 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 648
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 649 CDLCSKELSHKSSLTEHMK 667
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 618 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 675
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 676 CDLCSKELSHKSSLTEHMK 694
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 645 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 702
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 703 CDLCSKELSHKSSLTEHMK 721
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 672 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 729
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 730 CDLCSKELSHKSSLTEHMK 748
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 699 IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQG-IRYK 756
+ Y C +C + +SL H +H +Y C C K T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 757 CDLCSKELSHKSSLTEHMK 775
C C K + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 271 CVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLH 318
CV C K FSR S L +H ++H G + YKC C K S S L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 929 CVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLH 976
CV C K FSR S L +H ++H G + YKC C K S S L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLH 210
Y C C K FS S L +H ++H G + YKC C K FS L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 345
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 372
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 399
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 426
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 453
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 480
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 507
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 534
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 561
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 588
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 615
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 642
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 669
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 696
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 723
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 750
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 777
Y C C K S S L +H ++H G + YKC C K S S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLH 291
Y C C K FS S L H ++H G K KC+ C K FS+ S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLH 949
Y C C K FS S L H ++H G K KC+ C K FS+ S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLH 183
Y C C K FS L +H ++H G + YKC C K FS S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLH 237
Y C C K FS L +H ++H G + YKC C K FS L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLH 264
Y C C K FS L +H ++H G + YKC C K FS S L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 107 YKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLH 156
Y C K FS L +H+++H G + YKC C K FS L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 875 CDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLH 922
C C K F+ S L + ++H G + YKC C K FS S L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 347
YKCD C +K +L H +H G + Y+C++C + + ++L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 401
YKCD C +K +L H +H G + Y+C++C + + ++L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 455
YKCD C +K +L H +H G + Y+C++C + + ++L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 509
YKCD C +K +L H +H G + Y+C++C + + ++L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 563
YKCD C +K +L H +H G + Y+C++C + + ++L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 617
YKCD C +K +L H +H G + Y+C++C + + ++L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 671
YKCD C +K +L H +H G + Y+C++C + + ++L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 725
YKCD C +K +L H +H G + Y+C++C + + ++L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQG 779
YKCD C +K +L H +H G + Y+C++C + + ++L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLHQG 185
YKCD C F K +L H +H G + Y+C++C +F+ + L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQG 293
YKCD C F K L H +H G K +C +C +F+R ++L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLHQGIK 268
YKCD C F K +L H +H G + Y+C++C +F+ + L H ++H G K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQG 951
YKCD C F K L H +H G K +C +C +F+R ++L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQG 212
YKCD C F K L H +H G + Y+C++C F+ +L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 107 YKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQG 158
YKCD F YK L H+ +H G + Y+C++C F+ +L H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 874 KCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIK 926
KCD C F +K +L +H G + Y+C+ C +F+ + L H ++H G K
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQG 978
KC C F K +L H +H G + Y+C++C + + ++L H ++H G
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 329
C K +++ SHL H++ H G + Y CD C + + LT H + H G R ++C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 330 KELSHKSSLTEHMKLH 345
+ S L HMK H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 217 CDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-K 270
CD C K ++ HL H++ H G + Y CD C +F+ LT H + H G + +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 271 CVLCSKEFSRKSHLTRHMKLH 291
C C + FSR HL HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 902 CDF--CSKEFSCKSYLTGHIKLHQGIKN---KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 955
CD+ C K ++ S+L H++ H G K C +F+R LTRH + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 956 CDLCSKELSHKSSLTEHMKLH 976
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 136 CDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YK 189
CD C K ++ HL H++ H G + Y CD C +F+ LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 190 CDLCSKDFSCKKHLTRHMKLH 210
C C + FS HL HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-K 928
C C K +T S L ++ H G + Y CD+ C +F+ LT H + H G + +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 929 CVLCSKEFSRKSHLTRHMKLH 949
C C + FSR HL HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 190 CDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YK 243
CD C K ++ HL H++ H G + Y CD C F+ LTRH + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 244 CDLCSKEFSCKSYLTGHIKLH 264
C C + FS +L H+K H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 298 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 351
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 352 CDLCSKELSHKSSLTEHMKLH 372
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 325 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 378
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 379 CDLCSKELSHKSSLTEHMKLH 399
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 352 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 405
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 406 CDLCSKELSHKSSLTEHMKLH 426
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 379 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 432
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 433 CDLCSKELSHKSSLTEHMKLH 453
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 406 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 459
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 460 CDLCSKELSHKSSLTEHMKLH 480
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 433 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 486
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 487 CDLCSKELSHKSSLTEHMKLH 507
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 460 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 513
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 514 CDLCSKELSHKSSLTEHMKLH 534
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 487 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 540
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 541 CDLCSKELSHKSSLTEHMKLH 561
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 514 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 567
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 568 CDLCSKELSHKSSLTEHMKLH 588
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 541 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 594
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 595 CDLCSKELSHKSSLTEHMKLH 615
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 568 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 621
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 622 CDLCSKELSHKSSLTEHMKLH 642
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 595 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 648
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 649 CDLCSKELSHKSSLTEHMKLH 669
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 622 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 675
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 676 CDLCSKELSHKSSLTEHMKLH 696
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 649 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 702
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 703 CDLCSKELSHKSSLTEHMKLH 723
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 676 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 729
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 730 CDLCSKELSHKSSLTEHMKLH 750
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 703 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 756
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 757 CDLCSKELSHKSSLTEHMKLH 777
C C + S L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDL--CSKELSHKSSLTEHMKLHQG 978
C K +++ SHL H++ H G + Y CD C + + LT H + H G
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCS 329
C K +++ SHL H++ H G + Y CD C + + LT H + H G R ++C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 330 KELSHKSSLTEHMKLH 345
+ S L HMK H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 217 CDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-K 270
CD C K ++ HL H++ H G + Y CD C +F+ LT H + H G + +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 271 CVLCSKEFSRKSHLTRHMKLH 291
C C + FSR HL HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 902 CDF--CSKEFSCKSYLTGHIKLHQGIKN---KCVLCSKEFSRKSHLTRHMKLHQGVR-YK 955
CD+ C K ++ S+L H++ H G K C +F+R LTRH + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 956 CDLCSKELSHKSSLTEHMKLH 976
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 136 CDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YK 189
CD C K ++ HL H++ H G + Y CD C +F+ LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 190 CDLCSKDFSCKKHLTRHMKLH 210
C C + FS HL HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 875 CDL--CSKEFTHKSSLTEDMKLHQGIR-YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-K 928
CD C K +T S L ++ H G + Y CD+ C +F+ LT H + H G + +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 929 CVLCSKEFSRKSHLTRHMKLH 949
C C + FSR HL HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 190 CDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YK 243
CD C K ++ HL H++ H G + Y CD C F+ LTRH + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 244 CDLCSKEFSCKSYLTGHIKLH 264
C C + FS +L H+K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 298 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 351
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 352 CDLCSKELSHKSSLTEHMKLH 372
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 325 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 378
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 379 CDLCSKELSHKSSLTEHMKLH 399
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 352 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 405
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 406 CDLCSKELSHKSSLTEHMKLH 426
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 379 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 432
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 433 CDLCSKELSHKSSLTEHMKLH 453
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 406 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 459
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 460 CDLCSKELSHKSSLTEHMKLH 480
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 433 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 486
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 487 CDLCSKELSHKSSLTEHMKLH 507
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 460 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 513
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 514 CDLCSKELSHKSSLTEHMKLH 534
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 487 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 540
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 541 CDLCSKELSHKSSLTEHMKLH 561
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 514 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 567
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 568 CDLCSKELSHKSSLTEHMKLH 588
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 541 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 594
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 595 CDLCSKELSHKSSLTEHMKLH 615
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 568 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 621
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 622 CDLCSKELSHKSSLTEHMKLH 642
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 595 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 648
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 649 CDLCSKELSHKSSLTEHMKLH 669
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 622 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 675
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 676 CDLCSKELSHKSSLTEHMKLH 696
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 649 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 702
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 703 CDLCSKELSHKSSLTEHMKLH 723
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 676 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 729
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 730 CDLCSKELSHKSSLTEHMKLH 750
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 703 CDL--CSKELSHKSSLTEHMKLHQGIR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YK 756
CD C K + S L H++ H G + Y CD C + + LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 757 CDLCSKELSHKSSLTEHMKLH 777
C C + S L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDL--CSKELSHKSSLTEHMKLHQG 978
C K +++ SHL H++ H G + Y CD C + + LT H + H G
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 242 YKCDL--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLH 291
Y C + C + FS LT HI++H G K +C +C + FSR HLT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 188 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLH 237
Y C + C + FS LTRH+++H G + ++C +C ++FS HLT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 900 YKCDF--CSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLH 949
Y C C + FS LT HI++H G K +C +C + FSR HLT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 215 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLH 264
Y C + C + FS LTRH+++H G + ++C +C + FS +LT HI+ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLH 318
C + FSR LTRH+++H G + ++C +C + S LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 932 CSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLH 976
C + FSR LTRH+++H G + ++C +C + S LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 161 YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLH 210
Y C + C + FS LT H+++H G + ++C +C ++FS HLT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 134 YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLH 183
Y C + C + FS LTRH+++H G + ++C +C + FS +LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 97 LKKKLPQGFGYKCDLHS--KEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHM 153
L +P+ Y C + S + FS LT H ++H G + ++C +C ++FS HLT H+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 154 KLH 156
+ H
Sbjct: 70 RTH 72
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLH 922
C + C + F+ LT +++H G + ++C C + FS +LT HI+ H
Sbjct: 22 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 296 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 345
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 323 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 372
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 350 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 399
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 377 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 426
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 404 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 453
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 431 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 480
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 458 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 507
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 485 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 534
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 512 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 561
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 539 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 588
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 566 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 615
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 593 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 642
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 620 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 669
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 647 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 696
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 674 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 723
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 701 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 750
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 728 YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 777
Y C + C + S LT H+++H G + ++C +C + S LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 70/163 (42%), Gaps = 23/163 (14%)
Query: 187 RYKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKC--DLCSKDFSCKKHLTRHMKLHQGVR 241
RY C C ++ L H+ H G + + C + C K F+ HLTRH H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 242 -YKCDL--CSKEFSCKSYLTGHIKLHQGIKNKCVL------CSKEFSRKSHLTRHMKLH- 291
+ CD C F+ K+ + H IK CV C K F + + L H H
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIK-ICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 292 QGVRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 329
Q + Y+C + C K S S L H K+H G Y C D CS
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 160 RYKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKC--DLCSKDFSCKKHLTRHMKLHQGVR 214
RY C C ++ L H+ H G + + C + C K F+ HLTRH H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 215 -YKCDL--CSKDFSCKKHLTRHMKLHQGVR---YKCDL--CSKEFSCKSYLTGHIKLH-Q 265
+ CD C F+ K ++ +H ++ Y C C K F + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 266 GIKNKCV--LCSKEFSRKSHLTRHMKLHQGVRYKC---DLCS 302
+ +C C K FS S L RH K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 139 CSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKEFSCKSYLTEHMKLHQGVR---YKCDL 192
C K F+ HLTRH H G + + CD C F+ K+ + +H ++ Y C
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF 109
Query: 193 --CSKDFSCKKHLTRHMKLH-QGVRYKC--DLCSKDFSCKKHLTRHMKLHQGVRYKC--- 244
C K F L H H Q + Y+C + C K FS L RH K+H G Y C
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKD 167
Query: 245 DLCS 248
D CS
Sbjct: 168 DSCS 171
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 67/162 (41%), Gaps = 21/162 (12%)
Query: 241 RYKCDL--CSKEFSCKSYLTGHIKLHQGIKN---KCVLCSKEFSRKSHLTRHMKLHQGVR 295
RY C C ++ L H+ H G K K C K F+ HLTRH H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 296 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 346
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 347 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 383
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 871 IRCKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCD--FCSKEFSCKSYLTGHIKLHQGIKN 927
CK + C K FT LT H G + + CD C F+ K+ + H IK
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK- 101
Query: 928 KCVL------CSKEFSRKSHLTRHMKLH-QGVRYKC--DLCSKELSHKSSLTEHMKLHQG 978
CV C K F + + L H H Q + Y+C + C K S S L H K+H G
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 19/154 (12%)
Query: 274 CSKEFSRKSHLTRHMKLHQGVR-YKC--DLCSKELSHKSSLTEHMKLHQGIR-YKCDL-- 327
C +++ L H+ H G + + C + C K + LT H H G + + CD
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 328 CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-QGIRYKC-- 379
C + K+++ +H I+ Y C C K + L H H Q + Y+C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 380 DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 410
+ C K S S L H K+H G Y C D CS
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 295 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 349
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 350 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 400
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 401 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 437
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 322 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 376
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 377 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 427
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 428 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 464
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 349 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 403
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 404 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 454
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 455 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 491
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 376 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 430
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 431 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 481
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 482 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 518
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 403 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 457
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 458 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 508
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 509 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 545
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 430 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 484
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 485 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 535
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 536 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 572
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 457 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 511
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 512 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 562
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 563 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 599
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 484 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 538
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 539 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 589
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 590 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 626
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 511 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 565
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 566 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 616
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 617 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 653
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 538 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 592
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 593 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 643
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 644 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 680
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 565 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 619
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 620 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 670
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 671 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 707
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 592 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 646
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 647 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 697
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 698 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 734
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 619 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 673
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 674 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 724
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 725 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC---DLCS 761
+ Y+C + C K S S L H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 18/155 (11%)
Query: 646 RYKCDL--CSKELSHKSSLTEHMKLHQGIR-YKC--DLCSKELSHKSSLTEHMKLHQGIR 700
RY C C + L H+ H G + + C + C K + LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 701 -YKCDL--CSKELSHKSSLTEHMKLHQGIR---YKCDL--CSKELSHKSSLTEHMKLH-Q 751
+ CD C + K+++ +H I+ Y C C K + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 752 GIRYKC--DLCSKELSHKSSLTEHMKLHQGIRYKC 784
+ Y+C + C K S S L H K+H G Y C
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPC 164
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 870 GIRCKCDLCSKEFTHKSSLTEDMKLHQGIR---YKCDF--CSKEFSCKSYLTGHIKLH-Q 923
C D C FT K+++ + I+ Y C F C K F + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 924 GIKNKCV--LCSKEFSRKSHLTRHMKLHQGVRYKC---DLCS 960
+ +C C K FS S L RH K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 19/151 (12%)
Query: 216 KCDLCSKDFSCKKHLTRHMKLHQ--GVR--YKCDL--CSKE---FSCKSYLTGHIKLHQG 266
+ D CS++F ++ L H+ G R + C CS+E F + L H++ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 267 IK-NKCVL--CSKEFSRKSHLTRHMKLHQGVR-YKC--DLCSKELSHKSSLTEHM-KLHQ 319
K +KC C K +SR +L H++ H G + Y C + CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 320 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 347
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 243 KCDLCSKEFSCKSYLTGHIKLHQ--GIKNKCVL----CSKE---FSRKSHLTRHMKLHQG 293
+ D CS+EF + L HI G + + V CS+E F + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 294 VR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 346
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 347 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 374
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 873 CKCDLCSKEFTHKSSLTEDMKLHQ--GIR--YKCDF--CSKE---FSCKSYLTGHIKLHQ 923
C+ D CS+EF + L + G R + C + CS+E F + L H++ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 924 GIK-NKCVL--CSKEFSRKSHLTRHMKLHQGVR-YKC--DLCSKELSHKSSLTEHMKLHQ 977
G K +KC C K +SR +L H++ H G + Y C + CSK S+ S + HQ
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK----HQ 119
Query: 978 GRTY 981
RT+
Sbjct: 120 NRTH 123
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 274 CSKEFSRKSHLTRHMKLHQ--GVR--YKCDL--CSKELSHKSS---LTEHMKLHQGIR-Y 323
CS+EF + L H+ G R + C CS+EL + L HM+ H G + +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 324 KCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQGIR- 376
KC C K S +L H++ H G + Y C+ CSK S+ S +H + H +
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 377 YKCDL--CSKELSHKSSLTEHMKLHQG 401
Y C L C+K + SSL +H+K G
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 297 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 347
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 348 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 400
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 401 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 428
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 324 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 374
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 375 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 427
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 428 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 455
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 351 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 401
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 402 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 454
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 455 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 482
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 378 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 428
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 429 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 481
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 482 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 509
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 405 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 455
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 456 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 508
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 509 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 536
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 432 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 482
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 483 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 535
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 536 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 563
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 459 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 509
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 510 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 562
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 563 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 590
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 486 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 536
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 537 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 589
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 590 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 617
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 513 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 563
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 564 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 616
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 617 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 644
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 540 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 590
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 591 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 643
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 644 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 671
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 567 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 617
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 618 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 670
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 671 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 698
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 594 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 644
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 645 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 697
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 698 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 725
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 621 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 671
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 672 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 724
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 725 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 752
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 648 KCDLCSKELSHKSSLTEHMKLHQ--GIR--YKCDL--CSKELSHKSS---LTEHMKLHQG 698
+ D CS+E + L H+ G R + C CS+EL + L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 699 IR-YKCDL--CSKELSHKSSLTEHMKLHQGIR-YKCD--LCSKELSHKSSLTEHM-KLHQ 751
+ +KC C K S +L H++ H G + Y C+ CSK S+ S +H + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 752 GIR-YKCDL--CSKELSHKSSLTEHMKLHQG 779
+ Y C L C+K + SSL +H+K G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 873 CKCDLCSKE---FTHKSSLTEDMKLHQGIR-YKCDF--CSKEFSCKSYLTGHIKLHQGIK 926
C CS+E F + L M+ H G + +KC F C K +S L H++ H G K
Sbjct: 37 CHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK 96
Query: 927 NKCV---LCSKEFSRKSHLTRHM-KLHQGVR-YKCDL--CSKELSHKSSLTEHMKLHQG 978
CSK FS S +H + H + Y C L C+K + SSL +H+K G
Sbjct: 97 PYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHM-KLHQG 239
+ C++C++ F+ ++HL RH + H + Y C LC++ F+ + L RH K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHM-KLHQG 185
+ C++C++ F+ ++HL RH + H + Y C LC++ F+ + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 929 CVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHM-KLHQGRTYE 982
C +C++ F+R+ HL RH + H + Y C LC++ + + L H K+H G E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 271 CVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHM-KLHQG 320
C +C++ F+R+ HL RH + H + Y C LC++ + + L H K+H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHM-KLHQG 293
+ C++C++ F+ + +L H + H K C LC++ F+R+ L RH K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHM-KLHQG 347
+ C++C++ + + L H + H + Y C LC++ + + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHM-KLHQG 401
+ C++C++ + + L H + H + Y C LC++ + + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHM-KLHQG 455
+ C++C++ + + L H + H + Y C LC++ + + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHM-KLHQG 509
+ C++C++ + + L H + H + Y C LC++ + + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHM-KLHQG 563
+ C++C++ + + L H + H + Y C LC++ + + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHM-KLHQG 617
+ C++C++ + + L H + H + Y C LC++ + + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHM-KLHQG 671
+ C++C++ + + L H + H + Y C LC++ + + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHM-KLHQG 725
+ C++C++ + + L H + H + Y C LC++ + + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHM-KLHQG 779
+ C++C++ + + L H + H + Y C LC++ + + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFS 171
++C +C ++FS HLT H++ H G + + CD+C ++F+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFS 252
++C +C ++FS HLT H++ H G + + CD+C ++F+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRH 233
++C +C ++FS HLT H++ H G + + CD+C + F+ RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEH 314
+C +C + FSR HLT H++ H G + + CD+C ++ + H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEH 972
+C +C + FSR HLT H++ H G + + CD+C ++ + H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRH 287
++C +C + FS +LT HI+ H G K C +C ++F+R RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRH 945
++C C + FS +LT HI+ H G K C +C ++F+R RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH 341
++C +C + S LT H++ H G + + CD+C ++ + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH 395
++C +C + S LT H++ H G + + CD+C ++ + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH 449
++C +C + S LT H++ H G + + CD+C ++ + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH 503
++C +C + S LT H++ H G + + CD+C ++ + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH 557
++C +C + S LT H++ H G + + CD+C ++ + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH 611
++C +C + S LT H++ H G + + CD+C ++ + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH 665
++C +C + S LT H++ H G + + CD+C ++ + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH 719
++C +C + S LT H++ H G + + CD+C ++ + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEH 773
++C +C + S LT H++ H G + + CD+C ++ + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCD 218
+ C C + F+ L H + H R Y CD+C K F + HL H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 219 LCSKDFSCKKHLTRHMKLH 237
C K F + L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 271 CVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLC 328
C C + F++ +L H + H R Y CD+C K + L +H +H + +KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 329 SKELSHKSSLTEHMKLH 345
K +L H LH
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCD 957
+ C FC + F+ L H + H + C +C K F R+ HL H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 958 LCSKELSHKSSLTEHMKLHQGRTYETT 984
C K +L H LH + T
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLHQGIKN-KCV 272
+ C C + F+ +L H + H R Y CD+C K F + +L H +H K KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 273 LCSKEFSRKSHLTRHMKLH 291
C K F + L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 380
+ C C + + +L H + H R Y CD+C K + L +H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 381 LCSKELSHKSSLTEHMKLH 399
C K +L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 434
+ C C + + +L H + H R Y CD+C K + L +H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 435 LCSKELSHKSSLTEHMKLH 453
C K +L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 488
+ C C + + +L H + H R Y CD+C K + L +H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 489 LCSKELSHKSSLTEHMKLH 507
C K +L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 542
+ C C + + +L H + H R Y CD+C K + L +H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 543 LCSKELSHKSSLTEHMKLH 561
C K +L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 596
+ C C + + +L H + H R Y CD+C K + L +H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 597 LCSKELSHKSSLTEHMKLH 615
C K +L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 650
+ C C + + +L H + H R Y CD+C K + L +H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 651 LCSKELSHKSSLTEHMKLH 669
C K +L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 704
+ C C + + +L H + H R Y CD+C K + L +H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 705 LCSKELSHKSSLTEHMKLH 723
C K +L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLHQGIR-YKCD 758
+ C C + + +L H + H R Y CD+C K + L +H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 759 LCSKELSHKSSLTEHMKLH 777
C K +L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 875 CDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLC 932
C C + FT +L + H R Y CD C K F + +L H +H K KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 933 SKEFSRKSHLTRHMKLH 949
K F + L H LH
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 107 YKCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCD 164
+ C + F+ L H + H R Y CD+C K F + HL H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 165 LCSKEFSCKSYLTEHMKLH 183
C K F L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 243 KCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVL--CSKEFSRKSHLTRHMKLHQGVR-YKC 298
+C K F K L HI++H G K C C K F+R +L H + H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 299 DL--CSKELSHKSSLTEHMKLH 318
+ C + ++ S +HM +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 901 KCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVL--CSKEFSRKSHLTRHMKLHQGVR-YKC 956
+C K F K L HI++H G K C C K F+R +L H + H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 957 DL--CSKELSHKSSLTEHMKLH 976
+ C + ++ S +HM +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 108 KCDLHSKEFSYKCTLTEHRKLHQGIR-YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKC 163
+C K F K L H ++H G + + C C K F+ ++L H + H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 164 DL--CSKEFSCKSYLTEHMKLH 183
+ C + F+ S +HM +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 135 KCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKC 190
+C K F K L H+++H G + + C C K F+ L H + H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 191 DL--CSKDFSCKKHLTRHMKLH 210
+ C + F+ +HM +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 189 KCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDL--CSKDFSCKKHLTRHMKLHQGVR-YKC 244
+C K F K L H+++H G + + C C K F+ ++L H + H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 245 DL--CSKEFSCKSYLTGHIKLH 264
+ C + F+ S H+ +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIKNK-CVLCSKEFSRKSHLTRHMKLHQ 950
+ C+FC K + S L+ H + H G + + C C K F +S + RH+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQGVRYK-CDLCSKDFSCKKHLTRHMKLHQ 238
+ C+ C K + L+RH + H G R + C C K F + + RH+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 929 CVLCSKEFSRKSHLTRHMKLHQGVRYK-CDLCSKELSHKSSLTEHMKLHQGRT 980
C C K + S L+RH + H G R + C C K +S + H+K+HQ +
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP 59
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 346
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 373
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 400
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 427
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 454
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 481
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 508
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 535
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 562
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 589
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 616
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 643
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 670
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 697
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 724
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 751
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQGIRYK-CDLCSKELSHKSSLTEHMKLHQ 778
+ C+ C K S L+ H + H G R + C C K +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 271 CVLCSKEFSRKSHLTRHMKLHQGVRYK-CDLCSKELSHKSSLTEHMKLHQ 319
C C K + S L+RH + H G R + C C K +S + H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQGVRYK-CDLCSKDFSCKKHLTRHMKLHQ 211
+ C+ C K + S L+ H + H G R + C C K F + + RH+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIKNK-CVLCSKEFSRKSHLTRHMKLHQ 292
+ C+ C K + S L+ H + H G + + C C K F +S + RH+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQGVRYK-CDLCSKEFSCKSYLTEHMKLHQ 184
+ C+ C K + L+RH + H G R + C C K F +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQGVRYK-CDLCSKEFSCKSYLTGHIKLHQ 265
+ C+ C K + L+RH + H G R + C C K F +S + H+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 107 YKCDLHSKEFSYKCTLTEHRKLHQGIRYK-CDLCSKDFSCKKHLTRHMKLHQ 157
+ C+ K + L+ HR+ H G R + C C K F + + RH+K+HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 875 CDLCSKEFTHKSSLTEDMKLHQGIRYK-CDFCSKEFSCKSYLTGHIKLHQ 923
C+ C K + S L+ + H G R + C C K F +S + H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 162 KCDL--CSKEFSCKSYLTEHMK---LHQGVRYKCD--LCSKDFSCKKHLTRHMKLHQGVR 214
CD C + FS + YL H K +HQ + C C K F+ KKHL HMKLH R
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 215 -YKCDL 219
Y C+
Sbjct: 68 DYICEF 73
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 189 KCDL--CSKDFSCKKHLTRHMK---LHQGVRYKCD--LCSKDFSCKKHLTRHMKLHQGVR 241
CD C + FS +++L H K +HQ + C C K F+ KKHL HMKLH R
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 242 -YKCDL 246
Y C+
Sbjct: 68 DYICEF 73
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 901 KCDF--CSKEFSCKSYLTGHIKLHQGIKNKCV-----LCSKEFSRKSHLTRHMKLHQGVR 953
CDF C + FS + YL H K +Q I K C K F+ K HL HMKLH R
Sbjct: 9 PCDFPGCGRIFSNRQYLN-HHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 954 -YKCDL 958
Y C+
Sbjct: 68 DYICEF 73
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 243 KCDL--CSKEFSCKSYLTGHIKLHQGIKNKCV-----LCSKEFSRKSHLTRHMKLHQGVR 295
CD C + FS + YL H K +Q I K C K F+ K HL HMKLH R
Sbjct: 9 PCDFPGCGRIFSNRQYLN-HHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 296 -YKCDL 300
Y C+
Sbjct: 68 DYICEF 73
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 106 GYKCDLHS--KEFSYKCTLTEHRK---LHQGIRYKCD--LCSKDFSCKKHLTRHMKLHQG 158
G CD + FS + L H+K +HQ + C C K F+ KKHL HMKLH
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 159 VR-YKCDL 165
R Y C+
Sbjct: 66 TRDYICEF 73
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 13/57 (22%)
Query: 242 YKCDLCSKEFS-----CKSYLTGH---IKLHQGIKNKCVLCSKEFSRKSHLTRHMKL 290
Y+C +CS+ ++ C+ Y+T H +K++ C C KEF+RK ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP-----CPFCFKEFTRKDNMTAHVKI 62
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 900 YKCDFCSKEFS-----CKSYLTGH---IKLHQGIKNKCVLCSKEFSRKSHLTRHMKL 948
Y+C CS+ ++ C+ Y+T H +K++ C C KEF+RK ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP-----CPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 344
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 371
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 398
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 425
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 452
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 479
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 506
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 533
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 560
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 587
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 614
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 641
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 668
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 695
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 722
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 749
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLH--QGIR-YKCDLCSKELSHKSSLTEHMKL 776
Y+C +CS+ +H S+ H + ++ Y C C KE + K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 13/56 (23%)
Query: 874 KCDLCSKEFTHKSSL--------TEDMKLHQGIRYKCDFCSKEFSCKSYLTGHIKL 921
+C +CS+ +TH S+ ++K+ Y C FC KEF+ K +T H+K+
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKV-----YPCPFCFKEFTRKDNMTAHVKI 62
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 161 YKCDLCSKEFS-----CKSYLTEHMKLHQGVRYKCDLCSKDFSCKKHLTRHMKL 209
Y+C +CS+ ++ C+ Y+T H + Y C C K+F+ K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 134 YKCDLCSKDFS-----CKKHLTRHMKLHQGVRYKCDLCSKEFSCKSYLTEHMKL 182
Y+C +CS+ ++ C+ ++T H + Y C C KEF+ K +T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLH--QGVR-YKCDLCSKELSHKSSLTEHMKL 317
+C +CS+ ++ S+ RH + V+ Y C C KE + K ++T H+K+
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLH--QGVR-YKCDLCSKELSHKSSLTEHMKL 975
+C +CS+ ++ S+ RH + V+ Y C C KE + K ++T H+K+
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 188 YKCDLCSKDFS-----CKKHLTRHMKLHQGVRYKCDLCSKDFSCKKHLTRHMKL 236
Y+C +CS+ ++ C+ ++T H + Y C C K+F+ K ++T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQG 320
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQG 347
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQG 374
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQG 401
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQG 428
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQG 455
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQG 482
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQG 509
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQG 536
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQG 563
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQG 590
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQG 617
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQG 644
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQG 671
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQG 698
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQG 725
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQG 752
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 755 YKCDLCSKELSHKSSLTEHMKLHQG 779
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 954 YKCDLCSKELSHKSSLTEHMKLHQG 978
Y+CD+C K SH +SLT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQG 185
Y+CD+C K FS + LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 874 KCDLCSKEFTHKSSLTEDMKLHQG 897
+CD+C K F+H +SLT+ ++H G
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
Y+CD+C K FS LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
Y+CD+C K FS LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
Y+CD+C K FS LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLH 318
+C C K F +L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMKLH 976
+C C K F +L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 162 KCDLCSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLH 210
+C C K F YL H++ H G + YKC+ C + K L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 901 KCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLH 949
+C +C K F YL H++ H G K KC C ++K+ L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 297 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 345
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 324 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 372
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 351 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 399
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 378 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 426
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 405 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 453
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 432 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 480
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 459 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 507
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 486 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 534
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 513 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 561
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 540 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 588
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 567 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 615
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 594 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 642
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 621 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 669
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 648 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 696
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 675 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 723
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 702 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 750
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 729 KCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMKLH 777
+C C K L H++ H G + YKC+ C + K+SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 135 KCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMKLH 183
+C C K F +L H++ H G + YKC+ C + K+ L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 243 KCDLCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLH 291
+C C K F YL H++ H G K KC C ++K+ L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 189 KCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMKLH 237
+C C K F +L H++ H G + YKC+ C + K L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 216 KCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTGHIKLH 264
+C C K F +L H++ H G + YKC+ C + K+ L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQG 185
YKCD+C KEFS S+L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
YKCD+C K+FS HL H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
YKCD+C K+FS HL H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
YKCD+C K+FS HL H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIK 268
YKCD+C KEFS S+L H ++H G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIK 926
YKCD C KEFS S+L H ++H G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQG 320
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQG 347
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQG 374
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQG 401
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQG 428
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQG 455
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQG 482
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQG 509
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQG 536
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQG 563
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQG 590
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQG 617
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQG 644
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQG 671
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQG 698
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQG 725
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQG 752
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 755 YKCDLCSKELSHKSSLTEHMKLHQG 779
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 954 YKCDLCSKELSHKSSLTEHMKLHQG 978
YKCD+C KE S S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQG 293
KC +C KEFS+ SHL H ++H G
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQG 951
KC +C KEFS+ SHL H ++H G
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTG 37
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQG 185
Y C+ C K+FS KSYL H ++H G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
Y C+ C KDFS K +L H ++H G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
Y C+ C KDFS K +L H ++H G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
Y C+ C KDFS K +L H ++H G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIK 268
Y C+ C K+FS KSYL H ++H G K
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIK 926
Y C+ C K+FS KSYL H ++H G K
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 190 CDLCSKDFSCKKHLTRHMKL-HQGVRYKCDLCSKDFSCKKHLTRHMK 235
C +C + F+ K RH++L H + C C F LTRH+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN 77
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 163 CDLCSKEFSCKSYLTEHMKL-HQGVRYKCDLCSKDFSCKKHLTRHMK 208
C +C + F+ K H++L H + C C F LTRH+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN 77
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 160 RYKCDLCSKEFSCKSYLTEHMKLHQG 185
RYKC+ C K FS S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 295 RYKCDLCSKELSHKSSLTEHMKLHQG 320
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 322 RYKCDLCSKELSHKSSLTEHMKLHQG 347
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 349 RYKCDLCSKELSHKSSLTEHMKLHQG 374
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 376 RYKCDLCSKELSHKSSLTEHMKLHQG 401
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 403 RYKCDLCSKELSHKSSLTEHMKLHQG 428
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 430 RYKCDLCSKELSHKSSLTEHMKLHQG 455
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 457 RYKCDLCSKELSHKSSLTEHMKLHQG 482
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 484 RYKCDLCSKELSHKSSLTEHMKLHQG 509
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 511 RYKCDLCSKELSHKSSLTEHMKLHQG 536
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 538 RYKCDLCSKELSHKSSLTEHMKLHQG 563
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 565 RYKCDLCSKELSHKSSLTEHMKLHQG 590
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 592 RYKCDLCSKELSHKSSLTEHMKLHQG 617
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 619 RYKCDLCSKELSHKSSLTEHMKLHQG 644
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 646 RYKCDLCSKELSHKSSLTEHMKLHQG 671
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 673 RYKCDLCSKELSHKSSLTEHMKLHQG 698
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 700 RYKCDLCSKELSHKSSLTEHMKLHQG 725
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 727 RYKCDLCSKELSHKSSLTEHMKLHQG 752
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 754 RYKCDLCSKELSHKSSLTEHMKLHQG 779
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 953 RYKCDLCSKELSHKSSLTEHMKLHQG 978
RYKC+ C K S S L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 133 RYKCDLCSKDFSCKKHLTRHMKLHQG 158
RYKC+ C K FS L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 187 RYKCDLCSKDFSCKKHLTRHMKLHQG 212
RYKC+ C K FS L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 214 RYKCDLCSKDFSCKKHLTRHMKLHQG 239
RYKC+ C K FS L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 241 RYKCDLCSKEFSCKSYLTGHIKLHQGIK 268
RYKC+ C K FS S L+ H K+H G K
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQG 293
KC C K FSR S L++H K+H G
Sbjct: 14 KCNECGKVFSRNSQLSQHQKIHTG 37
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQG 951
KC C K FSR S L++H K+H G
Sbjct: 14 KCNECGKVFSRNSQLSQHQKIHTG 37
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 899 RYKCDFCSKEFSCKSYLTGHIKLHQGIK 926
RYKC+ C K FS S L+ H K+H G K
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLH-QGVR 187
+KC+ C K FSC YLT+H ++H +GV+
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLH-QGVR 160
+KC+ C K FSC K+LT+H ++H +GV+
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLH-QGVR 214
+KC+ C K FSC K+LT+H ++H +GV+
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLH-QGVR 241
+KC+ C K FSC K+LT+H ++H +GV+
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLH-QGIKN 269
+KC+ C K FSC YLT H ++H +G+K+
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHTRGVKS 41
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLH-QGIKN 927
+KC+ C K FSC YLT H ++H +G+K+
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHTRGVKS 41
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 160 RYKCDLCSKEFSCKSYLTEHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMK 208
+Y C+ C S L +H++ H VR Y C C+ F K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 295 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 343
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 322 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 370
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 349 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 397
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 376 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 424
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 403 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 451
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 430 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 478
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 457 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 505
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 484 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 532
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 511 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 559
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 538 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 586
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 565 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 613
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 592 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 640
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 619 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 667
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 646 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 694
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 673 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 721
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 700 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 748
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 727 RYKCDLCSKELSHKSSLTEHMKLHQGIR-YKCDLCSKELSHKSSLTEHMK 775
+Y C+ C S L +H++ H +R Y C C+ K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 187 RYKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKDFSCKKHLTRHMK 235
+Y C+ C L +H++ H VR Y C C+ F K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 133 RYKCDLCSKDFSCKKHLTRHMKLHQGVR-YKCDLCSKEFSCKSYLTEHMK 181
+Y C+ C L +H++ H VR Y C C+ F K LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 271 CVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMK 316
C C + S L +H++ H VR Y C C+ K +LT+HMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 929 CVLCSKEFSRKSHLTRHMKLHQGVR-YKCDLCSKELSHKSSLTEHMK 974
C C + S L +H++ H VR Y C C+ K +LT+HMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 241 RYKCDLCSKEFSCKSYLTGHIKLHQGIKNK-CVLCSKEFSRKSHLTRHMK 289
+Y C+ C S L HI+ H ++ C C+ F K +LT+HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQG 185
Y C C K FS KSYL HM+ H G
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIK 268
Y C C K FS KSYL H++ H G K
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIK 926
Y C C K FS KSYL H++ H G K
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
Y+C +CSK F+ K HL +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
Y+C +CSK F+ K HL +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
Y+C +CSK F+ K HL +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 271 CVLCSKEFSRKSHLTRHMKLHQG 293
C +CSK F++K+HL +H K H G
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTG 37
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 929 CVLCSKEFSRKSHLTRHMKLHQG 951
C +CSK F++K+HL +H K H G
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTG 37
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQG 185
Y+C +CSK F+ K++L +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQGVR 160
YKC+ C K F+ HL H ++H GV+
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQGVR 214
YKC+ C K F+ HL H ++H GV+
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQGVR 241
YKC+ C K F+ HL H ++H GV+
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQGVR 187
YKC+ C K F+ S+L H ++H GV+
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQGVR 295
KC C K F++ SHL H ++H GV+
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQGVR 953
KC C K F++ SHL H ++H GV+
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIK 268
YKC+ C K F+ S+L H ++H G+K
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIK 926
YKC+ C K F+ S+L H ++H G+K
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQG 320
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQG 347
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQG 374
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQG 401
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQG 428
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQG 455
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQG 482
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQG 509
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQG 536
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQG 563
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQG 590
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQG 617
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQG 644
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQG 671
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQG 698
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQG 725
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQG 752
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 755 YKCDLCSKELSHKSSLTEHMKLHQG 779
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 954 YKCDLCSKELSHKSSLTEHMKLHQG 978
Y+CD C K S K SL H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQG 266
Y+CD C K FS K L HI++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQG 185
Y+CD C K FS K L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
Y+CD C K FS K L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
Y+CD C K FS K L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
Y+CD C K FS K L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQG 924
Y+CD C K FS K L HI++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQG 320
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQG 347
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQG 374
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQG 401
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQG 428
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQG 455
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQG 482
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQG 509
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQG 536
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQG 563
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQG 590
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQG 617
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQG 644
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQG 671
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQG 698
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQG 725
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQG 752
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 755 YKCDLCSKELSHKSSLTEHMKLHQG 779
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 954 YKCDLCSKELSHKSSLTEHMKLHQG 978
YKCD+C K + SSLT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQG 185
YKCD+C K F S LT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
YKC+ C K F+ HLT H ++H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
YKC+ C K F+ HLT H ++H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
YKC+ C K F+ HLT H ++H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQG 185
YKC+ C K F+ S+LT H ++H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQG 293
KC C K F++ SHLT H ++H G
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTG 37
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQG 951
KC C K F++ SHLT H ++H G
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTG 37
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIK 268
YKC+ C K F+ S+LT H ++H G K
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLHQGIK 926
YKC+ C K F+ S+LT H ++H G K
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 954 YKCDLCSKELSHKSSLTEHMKLHQGR 979
Y+C +C K SH+ SL+ H ++H G+
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGK 38
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQG 320
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQG 347
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQG 374
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQG 401
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQG 428
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQG 455
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQG 482
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQG 509
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQG 536
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQG 563
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQG 590
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQG 617
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQG 644
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQG 671
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQG 698
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQG 725
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQG 752
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 755 YKCDLCSKELSHKSSLTEHMKLHQG 779
Y+C +C K SH+ SL+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQG 185
Y+C+ C K FS +S LT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 954 YKCDLCSKELSHKSSLTEHMKLHQGR 979
Y+C+ C K S +SSLT H +H G+
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGK 38
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQG 320
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQG 347
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQG 374
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQG 401
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQG 428
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQG 455
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQG 482
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQG 509
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQG 536
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQG 563
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQG 590
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQG 617
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQG 644
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQG 671
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQG 698
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQG 725
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQG 752
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 755 YKCDLCSKELSHKSSLTEHMKLHQG 779
Y+C+ C K S +SSLT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
Y+C+ C K FS + LT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
Y+C+ C K FS + LT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
Y+C+ C K FS + LT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLHQGIK 268
Y+C+ C K FS +S LT H +H G K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQG 293
KCV C K FSR+S L H KLH G
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQG 951
KCV C K FSR+S L H KLH G
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTG 37
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
YKC+ C K F+ HL RH ++H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTG 37
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
YKC+ C K F+ HL RH ++H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTG 37
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
YKC+ C K F+ HL RH ++H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTG 37
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQG 293
KC C K F++ SHL RH ++H G
Sbjct: 14 KCNECGKVFTQNSHLARHRRVHTG 37
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQG 951
KC C K F++ SHL RH ++H G
Sbjct: 14 KCNECGKVFTQNSHLARHRRVHTG 37
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 157 QGVR-YKCDLCSKEFSCKSYLTEHMKLHQG 185
GV+ Y C C K F KSYL HM+ H G
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTG 35
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLHQG 320
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLHQG 347
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLHQG 374
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLHQG 401
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLHQG 428
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLHQG 455
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLHQG 482
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLHQG 509
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLHQG 536
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLHQG 563
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLHQG 590
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLHQG 617
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLHQG 644
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLHQG 671
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLHQG 698
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLHQG 725
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLHQG 752
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 755 YKCDLCSKELSHKSSLTEHMKLHQG 779
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 954 YKCDLCSKELSHKSSLTEHMKLHQG 978
Y+C C K + K++LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQG 185
Y+C C K F+ K+ LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
Y+C C K F+ K +LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
Y+C C K F+ K +LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
Y+C C K F+ K +LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQG 293
+C C K F++K++LT+H ++H G
Sbjct: 14 RCGECGKAFAQKANLTQHQRIHTG 37
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQG 951
+C C K F++K++LT+H ++H G
Sbjct: 14 RCGECGKAFAQKANLTQHQRIHTG 37
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 242 YKCDLCSKEFSCKSYLTGHIKLH 264
+KC+ C K F +S+L GH++LH
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLH 35
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 900 YKCDFCSKEFSCKSYLTGHIKLH 922
+KC+ C K F +S+L GH++LH
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLH 35
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLH 291
KC C K F R+SHL H++LH
Sbjct: 14 KCNECGKGFGRRSHLAGHLRLH 35
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLH 949
KC C K F R+SHL H++LH
Sbjct: 14 KCNECGKGFGRRSHLAGHLRLH 35
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
YKC+ C K F+ HL RH +H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
YKC+ C K F+ HL RH +H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
YKC+ C K F+ HL RH +H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLHQG 293
KC C K F++ SHL RH +H G
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTG 37
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLHQG 951
KC C K F++ SHL RH +H G
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQGVR 160
YKC +C K F HL +H +H G R
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQGVR 214
YKC +C K F HL +H +H G R
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQGVR 241
YKC +C K F HL +H +H G R
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQGVR 187
YKC +C K F S+L +H +H G R
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
YKC+ C K F+ HL RH +H G
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
YKC+ C K F+ HL RH +H G
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
YKC+ C K F+ HL RH +H G
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTG 37
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
Y CD C K F L RH ++H G
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
Y CD C K F L RH ++H G
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
Y CD C K F L RH ++H G
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTG 37
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
YKC+ C K F+ HL RH +H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
YKC+ C K F+ HL RH +H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
YKC+ C K F+ HL RH +H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 160 RYKCDL--CSKEFSCKSYLTEHMKLHQGVR-YKC--DLCSKDFSCKKHLTRHMKLHQGVR 214
RY C C ++ L H+ H G + + C + C K F+ HLTRH H G +
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 215 -YKCDL--CSKDFSCKKHLTRHMKLHQGVR 241
+ CD C F+ K ++ +H ++
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
YKC+ C K FS L RH ++H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
YKC+ C K FS L RH ++H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
YKC+ C K FS L RH ++H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQG 185
YKC+ C K F SYL+ H ++H G
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTG 37
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG 158
Y C+ C K F K HL RH ++H G
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTG 37
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 188 YKCDLCSKDFSCKKHLTRHMKLHQG 212
Y C+ C K F K HL RH ++H G
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTG 37
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 215 YKCDLCSKDFSCKKHLTRHMKLHQG 239
Y C+ C K F K HL RH ++H G
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTG 37
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 271 CVLCSKEFSRKSHLTRHMKLHQG 293
C +C K F+ +S+L +H K+H G
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTG 37
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 929 CVLCSKEFSRKSHLTRHMKLHQG 951
C +C K F+ +S+L +H K+H G
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTG 37
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLHQGVR 187
Y C C+K FS KS L H + H GV+
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,052,126
Number of Sequences: 62578
Number of extensions: 1141330
Number of successful extensions: 9135
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4610
Number of HSP's gapped (non-prelim): 2887
length of query: 986
length of database: 14,973,337
effective HSP length: 108
effective length of query: 878
effective length of database: 8,214,913
effective search space: 7212693614
effective search space used: 7212693614
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)