Query psy17107
Match_columns 986
No_of_seqs 873 out of 5902
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 22:03:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1074|consensus 99.9 4.4E-28 9.6E-33 268.0 7.4 105 673-777 605-732 (958)
2 KOG1074|consensus 99.9 2.2E-26 4.8E-31 254.6 5.6 74 484-557 353-440 (958)
3 KOG2462|consensus 99.9 9.6E-26 2.1E-30 221.4 4.0 129 619-748 130-264 (279)
4 KOG2462|consensus 99.9 3.8E-25 8.2E-30 217.3 4.8 129 673-802 130-264 (279)
5 KOG3608|consensus 99.9 9E-25 1.9E-29 218.2 6.2 213 566-779 135-377 (467)
6 KOG3608|consensus 99.9 2.1E-24 4.5E-29 215.6 3.9 213 539-752 135-377 (467)
7 KOG3623|consensus 99.8 5.6E-22 1.2E-26 215.4 4.3 76 900-975 895-972 (1007)
8 KOG3623|consensus 99.8 2.1E-20 4.5E-25 203.4 6.3 101 458-558 211-329 (1007)
9 KOG3576|consensus 99.6 3.8E-16 8.3E-21 144.8 0.5 111 871-981 116-240 (267)
10 KOG3576|consensus 99.6 5.5E-16 1.2E-20 143.8 0.8 107 673-779 117-237 (267)
11 PLN03086 PRLI-interacting fact 99.0 6.8E-10 1.5E-14 124.9 7.8 95 675-774 455-560 (567)
12 PLN03086 PRLI-interacting fact 99.0 5.5E-10 1.2E-14 125.6 6.5 141 647-802 408-561 (567)
13 PHA00733 hypothetical protein 98.8 2.8E-09 6.2E-14 97.7 3.3 79 899-978 40-124 (128)
14 PHA02768 hypothetical protein; 98.7 7.1E-09 1.5E-13 76.9 2.1 42 928-970 7-48 (55)
15 PHA00733 hypothetical protein 98.7 1.2E-08 2.5E-13 93.7 3.8 56 695-751 68-123 (128)
16 PHA02768 hypothetical protein; 98.6 1.9E-08 4E-13 74.7 1.9 40 701-741 6-45 (55)
17 KOG3993|consensus 98.5 3E-08 6.5E-13 103.5 0.7 201 512-722 268-480 (500)
18 KOG3993|consensus 98.4 1.2E-07 2.7E-12 99.0 2.6 203 538-749 267-480 (500)
19 PF13465 zf-H2C2_2: Zinc-finge 98.4 1.9E-07 4.2E-12 59.2 1.9 25 941-965 1-26 (26)
20 PHA00616 hypothetical protein 98.3 3.3E-07 7.1E-12 64.6 1.4 33 953-985 1-33 (44)
21 KOG1146|consensus 98.1 3.6E-06 7.7E-11 100.9 5.4 103 873-979 1229-1354(1406)
22 PHA00732 hypothetical protein 97.9 6.9E-06 1.5E-10 67.9 2.9 21 728-748 2-22 (79)
23 PF13465 zf-H2C2_2: Zinc-finge 97.9 4.8E-06 1E-10 52.8 1.5 22 743-764 2-24 (26)
24 KOG1146|consensus 97.8 1.1E-05 2.3E-10 96.9 3.8 100 674-776 1229-1350(1406)
25 PHA00732 hypothetical protein 97.8 1.4E-05 3.1E-10 66.1 3.3 48 700-752 1-49 (79)
26 PHA00616 hypothetical protein 97.7 1.3E-05 2.8E-10 56.7 1.5 26 728-753 2-27 (44)
27 PF00096 zf-C2H2: Zinc finger, 97.5 4.8E-05 1E-09 46.9 1.6 23 954-976 1-23 (23)
28 PF05605 zf-Di19: Drought indu 97.3 0.00025 5.5E-09 54.4 3.8 47 728-777 3-52 (54)
29 PF12756 zf-C2H2_2: C2H2 type 97.3 0.00012 2.5E-09 65.2 2.3 73 901-976 1-73 (100)
30 PF05605 zf-Di19: Drought indu 97.3 0.00039 8.5E-09 53.4 4.3 49 700-751 2-53 (54)
31 PF00096 zf-C2H2: Zinc finger, 97.2 0.00012 2.6E-09 45.1 1.0 21 702-722 2-22 (23)
32 PF12756 zf-C2H2_2: C2H2 type 97.2 0.00018 3.9E-09 64.0 1.9 73 702-777 1-73 (100)
33 PF13894 zf-C2H2_4: C2H2-type 97.0 0.00039 8.4E-09 43.3 1.8 24 954-977 1-24 (24)
34 PF13912 zf-C2H2_6: C2H2-type 96.9 0.00049 1.1E-08 44.3 1.6 26 953-978 1-26 (27)
35 PF13894 zf-C2H2_4: C2H2-type 96.8 0.00072 1.6E-08 42.0 1.5 23 701-723 1-23 (24)
36 PF09237 GAGA: GAGA factor; I 96.4 0.0018 3.9E-08 46.8 1.8 39 943-981 12-52 (54)
37 PF13912 zf-C2H2_6: C2H2-type 96.3 0.002 4.4E-08 41.4 1.5 23 728-750 2-24 (27)
38 smart00355 ZnF_C2H2 zinc finge 96.3 0.0031 6.8E-08 39.9 2.2 24 954-977 1-24 (26)
39 PF13909 zf-H2C2_5: C2H2-type 95.9 0.0041 8.8E-08 38.6 1.5 24 954-978 1-24 (24)
40 COG5189 SFP1 Putative transcri 95.8 0.0051 1.1E-07 62.7 2.2 22 618-639 348-371 (423)
41 COG5189 SFP1 Putative transcri 95.6 0.0076 1.7E-07 61.4 2.5 67 822-892 345-418 (423)
42 smart00355 ZnF_C2H2 zinc finge 95.3 0.014 3E-07 36.8 2.3 19 730-748 3-21 (26)
43 PF12874 zf-met: Zinc-finger o 95.3 0.0094 2E-07 37.4 1.3 23 954-976 1-23 (25)
44 PF09237 GAGA: GAGA factor; I 95.2 0.015 3.2E-07 42.2 2.2 36 690-725 12-49 (54)
45 PF13909 zf-H2C2_5: C2H2-type 94.4 0.018 3.9E-07 35.7 0.9 22 701-723 1-22 (24)
46 KOG2231|consensus 94.0 0.037 8.1E-07 64.1 3.2 54 675-731 184-240 (669)
47 PF12874 zf-met: Zinc-finger o 93.9 0.024 5.2E-07 35.5 0.8 20 729-748 2-21 (25)
48 PF12171 zf-C2H2_jaz: Zinc-fin 93.7 0.023 5E-07 36.4 0.4 22 954-975 2-23 (27)
49 KOG2785|consensus 93.3 0.11 2.4E-06 55.3 4.9 78 700-782 166-250 (390)
50 KOG2231|consensus 93.2 0.089 1.9E-06 61.1 4.3 48 269-319 183-236 (669)
51 PF12171 zf-C2H2_jaz: Zinc-fin 93.1 0.043 9.4E-07 35.1 1.0 22 900-921 2-23 (27)
52 PRK04860 hypothetical protein; 92.5 0.056 1.2E-06 51.8 1.2 35 700-738 119-154 (160)
53 PRK04860 hypothetical protein; 92.4 0.042 9.2E-07 52.6 0.3 38 673-714 119-157 (160)
54 COG5048 FOG: Zn-finger [Genera 91.8 0.094 2E-06 60.9 2.4 114 871-984 288-449 (467)
55 KOG2785|consensus 91.7 0.19 4.1E-06 53.6 4.1 71 673-748 166-241 (390)
56 COG5048 FOG: Zn-finger [Genera 91.5 0.13 2.8E-06 59.8 3.2 54 619-672 289-349 (467)
57 COG5236 Uncharacterized conser 88.2 0.25 5.4E-06 51.3 1.7 135 619-778 151-305 (493)
58 PF13913 zf-C2HC_2: zinc-finge 87.4 0.46 1E-05 29.7 1.9 21 954-975 3-23 (25)
59 PF13913 zf-C2HC_2: zinc-finge 85.3 0.72 1.6E-05 28.9 1.9 19 756-775 4-22 (25)
60 smart00451 ZnF_U1 U1-like zinc 84.1 0.66 1.4E-05 31.7 1.6 23 953-975 3-25 (35)
61 KOG2482|consensus 83.7 1 2.2E-05 47.1 3.4 50 593-642 280-357 (423)
62 KOG2482|consensus 82.6 1.6 3.6E-05 45.6 4.4 50 620-669 280-357 (423)
63 COG5236 Uncharacterized conser 82.6 1 2.2E-05 47.0 2.8 99 133-235 151-272 (493)
64 smart00451 ZnF_U1 U1-like zinc 81.7 0.91 2E-05 31.0 1.6 22 727-748 3-24 (35)
65 cd00350 rubredoxin_like Rubred 80.5 1.1 2.4E-05 30.2 1.5 8 702-709 3-10 (33)
66 cd00350 rubredoxin_like Rubred 79.7 1.2 2.6E-05 30.1 1.5 9 700-708 17-25 (33)
67 KOG2893|consensus 77.5 0.68 1.5E-05 45.6 -0.2 45 703-750 13-58 (341)
68 KOG2893|consensus 75.2 1.2 2.7E-05 43.8 0.9 49 268-319 10-59 (341)
69 TIGR00622 ssl1 transcription f 75.1 7.1 0.00015 34.6 5.4 18 376-393 15-32 (112)
70 TIGR00622 ssl1 transcription f 74.1 6 0.00013 35.1 4.7 92 825-923 14-105 (112)
71 PF09986 DUF2225: Uncharacteri 72.9 1.9 4.1E-05 44.0 1.5 40 900-939 6-61 (214)
72 PF10571 UPF0547: Uncharacteri 68.7 2.8 6.1E-05 26.5 1.1 10 928-937 16-25 (26)
73 KOG2186|consensus 65.6 3.1 6.8E-05 41.9 1.3 50 566-617 4-53 (276)
74 cd00729 rubredoxin_SM Rubredox 65.5 3.9 8.5E-05 27.8 1.4 9 701-709 3-11 (34)
75 smart00659 RPOLCX RNA polymera 59.7 7.3 0.00016 28.3 2.0 27 872-908 2-28 (44)
76 TIGR02098 MJ0042_CXXC MJ0042 f 59.3 6.7 0.00015 27.3 1.7 33 874-910 4-36 (38)
77 PRK00398 rpoP DNA-directed RNA 59.3 7.7 0.00017 28.5 2.1 30 872-910 3-32 (46)
78 PRK00464 nrdR transcriptional 59.0 5.4 0.00012 38.0 1.6 42 874-919 2-48 (154)
79 smart00834 CxxC_CXXC_SSSS Puta 58.4 6.5 0.00014 27.8 1.6 29 873-907 6-34 (41)
80 PF12013 DUF3505: Protein of u 58.3 12 0.00025 33.7 3.5 25 620-644 81-109 (109)
81 PF09986 DUF2225: Uncharacteri 57.7 6.7 0.00015 40.0 2.1 42 871-912 4-61 (214)
82 TIGR02605 CxxC_CxxC_SSSS putat 53.4 8.3 0.00018 29.1 1.5 30 872-907 5-34 (52)
83 PF13717 zinc_ribbon_4: zinc-r 52.8 11 0.00025 25.9 1.9 32 874-909 4-35 (36)
84 COG2888 Predicted Zn-ribbon RN 50.1 14 0.0003 28.4 2.2 33 871-907 26-58 (61)
85 PF09538 FYDLN_acid: Protein o 49.7 11 0.00025 33.4 2.0 33 266-308 7-39 (108)
86 PF09538 FYDLN_acid: Protein o 49.1 12 0.00026 33.3 2.1 12 565-576 26-37 (108)
87 PHA00626 hypothetical protein 48.4 14 0.0003 27.9 1.9 15 899-913 23-37 (59)
88 KOG2186|consensus 48.4 9.7 0.00021 38.6 1.5 38 674-712 4-41 (276)
89 TIGR02300 FYDLN_acid conserved 47.8 11 0.00023 34.1 1.5 12 899-910 9-20 (129)
90 COG1592 Rubrerythrin [Energy p 47.4 10 0.00023 36.4 1.5 12 922-933 144-156 (166)
91 PF08274 PhnA_Zn_Ribbon: PhnA 47.2 9.7 0.00021 25.0 0.8 25 874-908 4-28 (30)
92 PF09723 Zn-ribbon_8: Zinc rib 46.3 13 0.00028 26.7 1.5 29 873-907 6-34 (42)
93 COG1996 RPC10 DNA-directed RNA 46.2 11 0.00024 27.9 1.1 29 871-908 5-33 (49)
94 TIGR01384 TFS_arch transcripti 46.1 14 0.0003 32.8 2.0 34 928-964 64-101 (104)
95 PF03604 DNA_RNApol_7kD: DNA d 45.9 13 0.00028 24.9 1.3 11 873-883 1-11 (32)
96 PRK14890 putative Zn-ribbon RN 45.9 15 0.00032 28.3 1.8 10 700-709 25-34 (59)
97 PF06524 NOA36: NOA36 protein; 45.4 10 0.00022 38.4 1.1 104 856-976 126-232 (314)
98 PF13719 zinc_ribbon_5: zinc-r 44.1 17 0.00037 25.2 1.8 33 874-910 4-36 (37)
99 PF12013 DUF3505: Protein of u 43.2 16 0.00034 32.7 2.0 25 954-978 81-109 (109)
100 smart00614 ZnF_BED BED zinc fi 42.9 19 0.00041 27.0 2.0 20 928-947 20-44 (50)
101 PF06524 NOA36: NOA36 protein; 42.3 17 0.00037 36.9 2.1 25 645-669 208-232 (314)
102 PF14353 CpXC: CpXC protein 41.3 13 0.00029 34.3 1.2 49 874-922 3-61 (128)
103 COG4049 Uncharacterized protei 40.6 14 0.00029 27.8 0.8 24 951-974 14-38 (65)
104 PRK00464 nrdR transcriptional 40.2 12 0.00027 35.6 0.8 14 728-741 29-42 (154)
105 smart00734 ZnF_Rad18 Rad18-lik 39.9 22 0.00048 22.5 1.6 19 955-974 3-21 (26)
106 TIGR00373 conserved hypothetic 39.1 17 0.00036 35.1 1.5 28 728-763 110-137 (158)
107 PF09332 Mcm10: Mcm10 replicat 38.9 13 0.00028 40.5 0.8 63 871-942 251-319 (344)
108 PRK09678 DNA-binding transcrip 38.7 16 0.00035 29.7 1.1 42 873-916 2-46 (72)
109 COG4049 Uncharacterized protei 38.4 14 0.0003 27.7 0.6 22 701-722 18-39 (65)
110 smart00531 TFIIE Transcription 38.2 15 0.00032 35.0 1.0 35 871-909 98-133 (147)
111 PF14353 CpXC: CpXC protein 37.9 31 0.00068 31.9 3.1 20 646-665 38-57 (128)
112 smart00531 TFIIE Transcription 37.2 14 0.00031 35.1 0.7 12 728-739 100-111 (147)
113 PF02892 zf-BED: BED zinc fing 36.6 21 0.00045 25.9 1.4 20 954-973 17-40 (45)
114 PRK06266 transcription initiat 34.0 21 0.00046 35.1 1.4 16 728-743 118-133 (178)
115 KOG4173|consensus 33.9 13 0.00028 36.3 -0.1 76 484-561 79-169 (253)
116 PF00301 Rubredoxin: Rubredoxi 33.1 46 0.001 24.6 2.6 35 873-908 2-43 (47)
117 COG1592 Rubrerythrin [Energy p 33.1 25 0.00054 33.9 1.6 9 647-655 135-143 (166)
118 PF15269 zf-C2H2_7: Zinc-finge 32.2 16 0.00034 26.0 0.1 21 900-920 21-41 (54)
119 TIGR01206 lysW lysine biosynth 31.6 45 0.00098 25.5 2.4 31 873-910 3-33 (54)
120 TIGR02300 FYDLN_acid conserved 31.6 34 0.00075 31.0 2.1 11 565-575 26-36 (129)
121 PF05443 ROS_MUCR: ROS/MUCR tr 29.6 25 0.00055 32.5 1.0 24 954-980 73-96 (132)
122 TIGR00373 conserved hypothetic 29.2 32 0.0007 33.2 1.7 29 160-196 109-137 (158)
123 KOG4173|consensus 28.5 15 0.00032 35.9 -0.7 69 139-209 87-168 (253)
124 PRK04023 DNA polymerase II lar 28.2 53 0.0012 40.6 3.5 50 646-739 626-675 (1121)
125 PF15269 zf-C2H2_7: Zinc-finge 27.6 35 0.00075 24.3 1.1 22 755-776 21-42 (54)
126 PRK09678 DNA-binding transcrip 26.8 30 0.00065 28.2 0.8 13 674-686 28-42 (72)
127 PF09845 DUF2072: Zn-ribbon co 26.2 40 0.00086 30.9 1.6 15 727-741 1-15 (131)
128 KOG0782|consensus 26.1 13 0.00028 41.8 -1.8 51 911-967 237-290 (1004)
129 PRK06266 transcription initiat 25.8 35 0.00075 33.7 1.3 29 160-196 117-145 (178)
130 PF07754 DUF1610: Domain of un 23.9 52 0.0011 20.5 1.3 9 871-879 15-23 (24)
131 PF14446 Prok-RING_1: Prokaryo 23.9 36 0.00078 25.9 0.7 10 874-883 7-16 (54)
132 cd00730 rubredoxin Rubredoxin; 23.5 68 0.0015 24.1 2.1 35 873-908 2-43 (50)
133 PRK04023 DNA polymerase II lar 23.3 70 0.0015 39.6 3.3 52 592-687 626-677 (1121)
134 PF12907 zf-met2: Zinc-binding 23.1 23 0.00051 25.0 -0.3 31 954-984 2-36 (40)
135 COG4957 Predicted transcriptio 21.6 52 0.0011 30.0 1.4 25 954-981 77-101 (148)
136 PF02176 zf-TRAF: TRAF-type zi 21.1 47 0.001 25.7 1.0 39 873-911 10-54 (60)
137 PF07975 C1_4: TFIIH C1-like d 20.6 65 0.0014 24.3 1.5 24 899-922 21-44 (51)
138 PF01096 TFIIS_C: Transcriptio 20.1 63 0.0014 22.8 1.3 10 900-909 29-38 (39)
139 PF04959 ARS2: Arsenite-resist 20.0 27 0.00058 35.4 -0.8 31 895-925 73-103 (214)
No 1
>KOG1074|consensus
Probab=99.94 E-value=4.4e-28 Score=267.96 Aligned_cols=105 Identities=28% Similarity=0.691 Sum_probs=72.6
Q ss_pred cccccccCcccccccchhcccccccCC-cccCCCCCcccCCcchhHHHhhhhCCC-----CccCC---ccccccCChhhH
Q psy17107 673 RYKCDLCSKELSHKSSLTEHMKLHQGI-RYKCDLCSKELSHKSSLTEHMKLHQGI-----RYKCD---LCSKELSHKSSL 743 (986)
Q Consensus 673 ~~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~C~~C~k~f~~~~~L~~H~~~h~~~-----~~~C~---~C~~~f~~~~~l 743 (986)
|-+|-+|-++..-+++|+.|.|+|+|+ ||+|.+||+.|+++.+|+.||-+|..+ +|.|+ +|-+.|.+.-.|
T Consensus 605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~l 684 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTL 684 (958)
T ss_pred ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccc
Confidence 356777777777777777777777777 677777777777777777777777654 36677 777777777777
Q ss_pred HHHhhhhcCC--C------------CCCCCCcccccCchhHHHHHHhh
Q psy17107 744 TEHMKLHQGI--R------------YKCDLCSKELSHKSSLTEHMKLH 777 (986)
Q Consensus 744 ~~H~~~H~~~--~------------~~C~~C~~~f~~~~~l~~H~~~h 777 (986)
..|+++|.+. + =+|..|.+.|.....+..++.-|
T Consensus 685 pQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~ 732 (958)
T KOG1074|consen 685 PQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQ 732 (958)
T ss_pred cceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhcc
Confidence 7777777632 0 25777777777776666666555
No 2
>KOG1074|consensus
Probab=99.92 E-value=2.2e-26 Score=254.62 Aligned_cols=74 Identities=26% Similarity=0.543 Sum_probs=61.6
Q ss_pred ccccCcCCccccCcchhhhHhhccCCc-ccccCcccccccCchhHHHHhhhccCC-c------------cccccCCCccc
Q psy17107 484 RYKCDLCSKELSHKSSLTEHMKLHQGI-RYKCDLCSKELSHKSSLTEHMKLHQGI-R------------YKCDLCSKELS 549 (986)
Q Consensus 484 ~~~C~~C~~~f~~~~~L~~H~~~h~~~-~~~C~~C~k~f~~~~~L~~H~~~h~~~-~------------~~C~~C~~~f~ 549 (986)
+.+|.+|.+.|.+.+.|+.|+|.|+|+ ||+|++||..|.++.+|+.|...|... | +.|.+|.-.+.
T Consensus 353 khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e~~p~~~m~p~~~~e~l~~~i~st~~p 432 (958)
T KOG1074|consen 353 KHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHREKYPHVQMNPHPVQEHLQYVITSTGLP 432 (958)
T ss_pred cchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeeccccCCccccCCCCchhhhcceeeccccC
Confidence 678999999999999999999999998 999999999999999999999888754 1 45677766665
Q ss_pred ChhhHHHH
Q psy17107 550 HKSSLTEH 557 (986)
Q Consensus 550 ~~~~L~~H 557 (986)
.-.+..-+
T Consensus 433 ~g~~vpp~ 440 (958)
T KOG1074|consen 433 YGPSVPPE 440 (958)
T ss_pred CCCCCCCC
Confidence 54444333
No 3
>KOG2462|consensus
Probab=99.91 E-value=9.6e-26 Score=221.44 Aligned_cols=129 Identities=31% Similarity=0.696 Sum_probs=82.7
Q ss_pred cccCCCCCcccccchhHHHHhhhccCC----cccccccccccccccccccccccccCCcccccccCcccccccchhcccc
Q psy17107 619 RYKCDLCSKELSHKSSLTEHMKLHQGI----RYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMK 694 (986)
Q Consensus 619 ~~~C~~C~~~f~~~~~L~~H~~~H~~~----~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~k~f~~~~~L~~H~~ 694 (986)
+|+|+.||+.+.+.++|.+|.++|-.. .+.|++|||.|.+...|+.|+|+|+ .+++|.+|||.|.....|+-|+|
T Consensus 130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGHiR 208 (279)
T KOG2462|consen 130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFSRPWLLQGHIR 208 (279)
T ss_pred ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC-CCcccccccccccchHHhhcccc
Confidence 456666666666666666666665432 4666666666666666666666665 36666666666666666666666
Q ss_pred cccCC-cccCCCCCcccCCcchhHHHhhhhCCC-CccCCccccccCChhhHHHHhh
Q psy17107 695 LHQGI-RYKCDLCSKELSHKSSLTEHMKLHQGI-RYKCDLCSKELSHKSSLTEHMK 748 (986)
Q Consensus 695 ~h~~~-~~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~ 748 (986)
+|||| ||.|+.|+|.|+++++|+.||++|.+. +|.|+.|+|+|..++.|..|..
T Consensus 209 THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 209 THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred cccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence 66666 666666666666666666666666653 6666666666666666666643
No 4
>KOG2462|consensus
Probab=99.91 E-value=3.8e-25 Score=217.27 Aligned_cols=129 Identities=31% Similarity=0.672 Sum_probs=73.6
Q ss_pred cccccccCcccccccchhcccccccCC----cccCCCCCcccCCcchhHHHhhhhCCCCccCCccccccCChhhHHHHhh
Q psy17107 673 RYKCDLCSKELSHKSSLTEHMKLHQGI----RYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMK 748 (986)
Q Consensus 673 ~~~C~~C~k~f~~~~~L~~H~~~h~~~----~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~ 748 (986)
.|+|+.|||.+.+.++|.+|..+|-.. .+.|++|||.|.+-..|+.|+++|+ .|++|.+|||.|...+-|+-|+|
T Consensus 130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGHiR 208 (279)
T KOG2462|consen 130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFSRPWLLQGHIR 208 (279)
T ss_pred ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC-CCcccccccccccchHHhhcccc
Confidence 455555555555555555555555322 3555555555555555555555554 35555555555555555555555
Q ss_pred hhcCC-CCCCCCCcccccCchhHHHHHHhhCC-CCCCCCcccccccccchhHHHhh
Q psy17107 749 LHQGI-RYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLKLESQ 802 (986)
Q Consensus 749 ~H~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~h~~ 802 (986)
+|||+ ||.|+.|++.|.++++|+.||++|.+ ++|+|..|+|+|...+.|..|..
T Consensus 209 THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 209 THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred cccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence 55555 55555555555555555555555555 55556666666555555555554
No 5
>KOG3608|consensus
Probab=99.90 E-value=9e-25 Score=218.19 Aligned_cols=213 Identities=26% Similarity=0.590 Sum_probs=180.9
Q ss_pred ccC--CCCCCcCCCchhHHHHhhhccC------------c--cccccc--cCccCCCchhHHHHHhhhCC-CcccCCCCC
Q psy17107 566 YKC--DLCSKELSHKSSLTEHMKLHQG------------I--RYKCDL--CSKELSHKSSLTEHMKLHQG-IRYKCDLCS 626 (986)
Q Consensus 566 ~~C--~~C~~~f~~~~~l~~H~~~h~~------------~--~~~C~~--C~~~f~~~~~L~~H~~~h~~-~~~~C~~C~ 626 (986)
|.| ..|+..|.+...|..|+..|.. + .+.|.. |-+.|.+++.|+.|++.|++ +...|+.||
T Consensus 135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg 214 (467)
T KOG3608|consen 135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCG 214 (467)
T ss_pred hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHH
Confidence 455 5688888888888888776631 1 256654 88899999999999999998 788999999
Q ss_pred cccccchhHHHHhhhccCC---cccccccccccccccccccccccccCCcccccccCcccccccchhcccccccCC--cc
Q psy17107 627 KELSHKSSLTEHMKLHQGI---RYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGI--RY 701 (986)
Q Consensus 627 ~~f~~~~~L~~H~~~H~~~---~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~--~~ 701 (986)
.-|+++..|-.|++.-+.. +|.|..|.|.|.+...|..|++.|-. -|+|+.|+.+....++|..|++.-+.+ ||
T Consensus 215 ~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn-~ykCplCdmtc~~~ssL~~H~r~rHs~dkpf 293 (467)
T KOG3608|consen 215 ELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN-CYKCPLCDMTCSSASSLTTHIRYRHSKDKPF 293 (467)
T ss_pred HHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh-cccccccccCCCChHHHHHHHHhhhccCCCc
Confidence 9999999999998876643 89999999999999999999988854 699999999999999999999875443 99
Q ss_pred cCCCCCcccCCcchhHHHhhhhCCCCccCCc--cccccCChhhHHHHhhhhc-CC---CCCCCCCcccccCchhHHHHHH
Q psy17107 702 KCDLCSKELSHKSSLTEHMKLHQGIRYKCDL--CSKELSHKSSLTEHMKLHQ-GI---RYKCDLCSKELSHKSSLTEHMK 775 (986)
Q Consensus 702 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~H~-~~---~~~C~~C~~~f~~~~~l~~H~~ 775 (986)
+|+.|++.|.+.++|.+|..+|....|.|+. |..+|.+..+|+.|++.+. |. +|.|-.|++.|++-.+|..|++
T Consensus 294 KCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~ 373 (467)
T KOG3608|consen 294 KCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLM 373 (467)
T ss_pred cccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHH
Confidence 9999999999999999999999977899988 9999999999999998765 43 6999999999999999999986
Q ss_pred hhCC
Q psy17107 776 LHQG 779 (986)
Q Consensus 776 ~h~~ 779 (986)
.-++
T Consensus 374 kkH~ 377 (467)
T KOG3608|consen 374 KKHG 377 (467)
T ss_pred Hhhc
Confidence 6554
No 6
>KOG3608|consensus
Probab=99.89 E-value=2.1e-24 Score=215.63 Aligned_cols=213 Identities=26% Similarity=0.584 Sum_probs=185.6
Q ss_pred ccc--ccCCCcccChhhHHHHhhhcCC-------------Cc-ccC--CCCCCcCCCchhHHHHhhhccCc-cccccccC
Q psy17107 539 YKC--DLCSKELSHKSSLTEHMKLHQG-------------IR-YKC--DLCSKELSHKSSLTEHMKLHQGI-RYKCDLCS 599 (986)
Q Consensus 539 ~~C--~~C~~~f~~~~~L~~H~~~h~~-------------~~-~~C--~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~ 599 (986)
|.| +.|+..|.+...+..|+-.|.. +| +.| .-|-+.|..++.|++|++.|+++ ...|+.||
T Consensus 135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg 214 (467)
T KOG3608|consen 135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCG 214 (467)
T ss_pred hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHH
Confidence 556 4688888888888888876631 12 444 56889999999999999999988 78999999
Q ss_pred ccCCCchhHHHHHhhhCC---CcccCCCCCcccccchhHHHHhhhccCCcccccccccccccccccccccccccC--Ccc
Q psy17107 600 KELSHKSSLTEHMKLHQG---IRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQG--IRY 674 (986)
Q Consensus 600 ~~f~~~~~L~~H~~~h~~---~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~L~~H~~~H~~--~~~ 674 (986)
.-|.++..|-.|++.-+. .+|+|..|.|.|.+...|..|+..|-. -|+|+.|+.+....++|..|++.-+. +||
T Consensus 215 ~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn-~ykCplCdmtc~~~ssL~~H~r~rHs~dkpf 293 (467)
T KOG3608|consen 215 ELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN-CYKCPLCDMTCSSASSLTTHIRYRHSKDKPF 293 (467)
T ss_pred HHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh-cccccccccCCCChHHHHHHHHhhhccCCCc
Confidence 999999999999987765 589999999999999999999999865 79999999999999999999986443 499
Q ss_pred cccccCcccccccchhcccccccCCcccCCC--CCcccCCcchhHHHhhhhC-CC---CccCCccccccCChhhHHHHhh
Q psy17107 675 KCDLCSKELSHKSSLTEHMKLHQGIRYKCDL--CSKELSHKSSLTEHMKLHQ-GI---RYKCDLCSKELSHKSSLTEHMK 748 (986)
Q Consensus 675 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~--C~k~f~~~~~L~~H~~~h~-~~---~~~C~~C~~~f~~~~~l~~H~~ 748 (986)
+|+.|++.|.+.++|.+|..+|+...|+|+. |..+|++...|++|++.++ |. +|.|..|++.|.+..+|..|++
T Consensus 294 KCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~ 373 (467)
T KOG3608|consen 294 KCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLM 373 (467)
T ss_pred cccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHH
Confidence 9999999999999999999999977899998 9999999999999998776 43 7999999999999999999976
Q ss_pred hhcC
Q psy17107 749 LHQG 752 (986)
Q Consensus 749 ~H~~ 752 (986)
.-++
T Consensus 374 kkH~ 377 (467)
T KOG3608|consen 374 KKHG 377 (467)
T ss_pred Hhhc
Confidence 5444
No 7
>KOG3623|consensus
Probab=99.84 E-value=5.6e-22 Score=215.40 Aligned_cols=76 Identities=42% Similarity=0.856 Sum_probs=74.0
Q ss_pred ecccccCcccccchhhccccccccCCCc-ccccccccccChHHHHHHhhhhcCC-ccccCCCCccccchhhHHHHHhh
Q psy17107 900 YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGV-RYKCDLCSKELSHKSSLTEHMKL 975 (986)
Q Consensus 900 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~C~~C~~~f~~~~~L~~H~~~H~~~-~~~C~~C~~~f~~~~~l~~H~~~ 975 (986)
|.|+.|+|.|...+.|.+|.--|+|.|| +|.+|.|+|..+-.|..|+|.|.|| ||.|+.|+|+|+++.+...||-.
T Consensus 895 yaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMNH 972 (1007)
T KOG3623|consen 895 YACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMNH 972 (1007)
T ss_pred chHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhcc
Confidence 9999999999999999999999999999 9999999999999999999999999 99999999999999999999953
No 8
>KOG3623|consensus
Probab=99.81 E-value=2.1e-20 Score=203.38 Aligned_cols=101 Identities=34% Similarity=0.755 Sum_probs=92.8
Q ss_pred ccccCCCCcCCCchhHHHHhhhccCc---ccccCcCCccccCcchhhhHhhccCC--------------cccccCccccc
Q psy17107 458 YKCDLCSKELSHKSSLTEHMKLHQGI---RYKCDLCSKELSHKSSLTEHMKLHQG--------------IRYKCDLCSKE 520 (986)
Q Consensus 458 ~~C~~C~~~f~~~~~L~~H~~~h~~~---~~~C~~C~~~f~~~~~L~~H~~~h~~--------------~~~~C~~C~k~ 520 (986)
..|++|++.+.....|+.|++.-+.+ .|.|..|.++|..+..|.+||.+|.. ..|+|..|||.
T Consensus 211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKA 290 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKA 290 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchh
Confidence 57999999999999999999865543 69999999999999999999998852 15999999999
Q ss_pred ccCchhHHHHhhhccCC-ccccccCCCcccChhhHHHHh
Q psy17107 521 LSHKSSLTEHMKLHQGI-RYKCDLCSKELSHKSSLTEHM 558 (986)
Q Consensus 521 f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~L~~H~ 558 (986)
|+.+..|+.|+|||.|+ ||.|+.|+|+|....++..||
T Consensus 291 FKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHm 329 (1007)
T KOG3623|consen 291 FKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHM 329 (1007)
T ss_pred hhhHHHHHhhheeecCCCCcCCcccccccccCCcccccc
Confidence 99999999999999998 999999999999999999997
No 9
>KOG3576|consensus
Probab=99.57 E-value=3.8e-16 Score=144.82 Aligned_cols=111 Identities=30% Similarity=0.605 Sum_probs=102.2
Q ss_pred cccccCCCCCeeeccccccccccccccce-ecccccCcccccchhhccccccccCCCc-ccccccccccChHHHHHHhh-
Q psy17107 871 IRCKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCDFCSKEFSCKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMK- 947 (986)
Q Consensus 871 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~C~~C~~~f~~~~~L~~H~~- 947 (986)
..+.|.+|||+|.....|.+|++-|...+ |.|..|||.|....+|++|+|+|||.+| +|..|+|+|+++-.|..|.+
T Consensus 116 d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~k 195 (267)
T KOG3576|consen 116 DSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKK 195 (267)
T ss_pred CeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHH
Confidence 56889999999999999999999998877 9999999999999999999999999999 99999999999999999965
Q ss_pred hhcC-----------CccccCCCCccccchhhHHHHHhhccCCCC
Q psy17107 948 LHQG-----------VRYKCDLCSKELSHKSSLTEHMKLHQGRTY 981 (986)
Q Consensus 948 ~H~~-----------~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~ 981 (986)
+|.- +-|.|..||++-...-.+..|++.|+...|
T Consensus 196 vhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp 240 (267)
T KOG3576|consen 196 VHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP 240 (267)
T ss_pred HcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence 5531 149999999999999999999999987765
No 10
>KOG3576|consensus
Probab=99.56 E-value=5.5e-16 Score=143.76 Aligned_cols=107 Identities=31% Similarity=0.708 Sum_probs=90.1
Q ss_pred cccccccCcccccccchhcccccccCC-cccCCCCCcccCCcchhHHHhhhhCCC-CccCCccccccCChhhHHHHhhhh
Q psy17107 673 RYKCDLCSKELSHKSSLTEHMKLHQGI-RYKCDLCSKELSHKSSLTEHMKLHQGI-RYKCDLCSKELSHKSSLTEHMKLH 750 (986)
Q Consensus 673 ~~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~H 750 (986)
.|.|.+|+|+|.-...|.+|++-|... +|-|..|||+|.+..+|++|+++|+|. ||+|..|+|+|.+.-+|..|++.-
T Consensus 117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kv 196 (267)
T KOG3576|consen 117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKV 196 (267)
T ss_pred eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHH
Confidence 588888888888888888888888876 788888888888888888888888887 888888888888888888887654
Q ss_pred cCC------------CCCCCCCcccccCchhHHHHHHhhCC
Q psy17107 751 QGI------------RYKCDLCSKELSHKSSLTEHMKLHQG 779 (986)
Q Consensus 751 ~~~------------~~~C~~C~~~f~~~~~l~~H~~~h~~ 779 (986)
+|. -|.|+.||+.-.....+..|++.|+.
T Consensus 197 hgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 197 HGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred cCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence 442 37899999999999999999988864
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.99 E-value=6.8e-10 Score=124.86 Aligned_cols=95 Identities=20% Similarity=0.509 Sum_probs=50.1
Q ss_pred cccccCcccccccchhcccccccCCcccCCCCCcccCCcchhHHHhhhhCCC-CccCCccccccCC----------hhhH
Q psy17107 675 KCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGI-RYKCDLCSKELSH----------KSSL 743 (986)
Q Consensus 675 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~~----------~~~l 743 (986)
.|+.|++.|. .+.|..|+++|+ .++.|+ ||+.+ .+..|..|+.+|.++ |+.|+.|++.|.. .+.|
T Consensus 455 ~C~~Cgk~f~-~s~LekH~~~~H-kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~L 530 (567)
T PLN03086 455 HCEKCGQAFQ-QGEMEKHMKVFH-EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGM 530 (567)
T ss_pred cCCCCCCccc-hHHHHHHHHhcC-CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhH
Confidence 4556655553 345556655553 455565 65433 445555565555543 5556666655531 2355
Q ss_pred HHHhhhhcCCCCCCCCCcccccCchhHHHHH
Q psy17107 744 TEHMKLHQGIRYKCDLCSKELSHKSSLTEHM 774 (986)
Q Consensus 744 ~~H~~~H~~~~~~C~~C~~~f~~~~~l~~H~ 774 (986)
..|+......++.|..||+.|..+ .|..|+
T Consensus 531 t~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~ 560 (567)
T PLN03086 531 SEHESICGSRTAPCDSCGRSVMLK-EMDIHQ 560 (567)
T ss_pred HHHHHhcCCcceEccccCCeeeeh-hHHHHH
Confidence 555555533355666666555443 344444
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.98 E-value=5.5e-10 Score=125.60 Aligned_cols=141 Identities=18% Similarity=0.453 Sum_probs=105.2
Q ss_pred ccccccccccccccccccccccccCCcccccc--cCcccccccchhcccccccCCcccCCCCCcccCCcchhHHHhhhhC
Q psy17107 647 YKCDLCSKELSHKSSLTEHMKLHQGIRYKCDL--CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQ 724 (986)
Q Consensus 647 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H~~~h~ 724 (986)
-.|+.|..... ...|..|...-.-..-.|+. ||..| .+..|..| +.|+.||+.|. ...|..|+++|+
T Consensus 408 V~C~NC~~~i~-l~~l~lHe~~C~r~~V~Cp~~~Cg~v~-~r~el~~H--------~~C~~Cgk~f~-~s~LekH~~~~H 476 (567)
T PLN03086 408 VECRNCKHYIP-SRSIALHEAYCSRHNVVCPHDGCGIVL-RVEEAKNH--------VHCEKCGQAFQ-QGEMEKHMKVFH 476 (567)
T ss_pred EECCCCCCccc-hhHHHHHHhhCCCcceeCCccccccee-eccccccC--------ccCCCCCCccc-hHHHHHHHHhcC
Confidence 34555655442 33344454332222345764 88888 34556665 58999999996 688999999987
Q ss_pred CCCccCCccccccCChhhHHHHhhhhcCC-CCCCCCCccccc----------CchhHHHHHHhhCCCCCCCCcccccccc
Q psy17107 725 GIRYKCDLCSKELSHKSSLTEHMKLHQGI-RYKCDLCSKELS----------HKSSLTEHMKLHQGIRYKCDLCSKELSH 793 (986)
Q Consensus 725 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~-~~~C~~C~~~f~----------~~~~l~~H~~~h~~~~~~C~~C~~~f~~ 793 (986)
.||.|+ ||+.+ .+..|..|+++|.+. ++.|..|++.|. ..+.|..|..+...+++.|..||+.+..
T Consensus 477 -kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrl 553 (567)
T PLN03086 477 -EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVML 553 (567)
T ss_pred -CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeee
Confidence 799999 99755 679999999999877 999999999995 2458999999987799999999999876
Q ss_pred cchhHHHhh
Q psy17107 794 KSSLKLESQ 802 (986)
Q Consensus 794 ~~~l~~h~~ 802 (986)
+ .+..|+.
T Consensus 554 r-dm~~H~~ 561 (567)
T PLN03086 554 K-EMDIHQI 561 (567)
T ss_pred h-hHHHHHH
Confidence 4 4555554
No 13
>PHA00733 hypothetical protein
Probab=98.79 E-value=2.8e-09 Score=97.70 Aligned_cols=79 Identities=19% Similarity=0.350 Sum_probs=63.2
Q ss_pred eecccccCcccccchhhccc--cc---cccCCCc-ccccccccccChHHHHHHhhhhcCCccccCCCCccccchhhHHHH
Q psy17107 899 RYKCDFCSKEFSCKSYLTGH--IK---LHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGVRYKCDLCSKELSHKSSLTEH 972 (986)
Q Consensus 899 ~~~C~~C~k~f~~~~~L~~H--~~---~H~~~~~-~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~l~~H 972 (986)
++.|++|++.|..+..|..| ++ .+.++++ +|+.||+.|.+.+.|..|+++|+ .+|.|++|+++|.....|..|
T Consensus 40 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~-~~~~C~~CgK~F~~~~sL~~H 118 (128)
T PHA00733 40 RLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTE-HSKVCPVCGKEFRNTDSTLDH 118 (128)
T ss_pred hHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCC-cCccCCCCCCccCCHHHHHHH
Confidence 37777777777777776665 22 2234556 99999999999999999999873 379999999999999999999
Q ss_pred HhhccC
Q psy17107 973 MKLHQG 978 (986)
Q Consensus 973 ~~~H~~ 978 (986)
++..+|
T Consensus 119 ~~~~h~ 124 (128)
T PHA00733 119 VCKKHN 124 (128)
T ss_pred HHHhcC
Confidence 988776
No 14
>PHA02768 hypothetical protein; Provisional
Probab=98.69 E-value=7.1e-09 Score=76.91 Aligned_cols=42 Identities=14% Similarity=0.464 Sum_probs=34.9
Q ss_pred ccccccccccChHHHHHHhhhhcCCccccCCCCccccchhhHH
Q psy17107 928 KCVLCSKEFSRKSHLTRHMKLHQGVRYKCDLCSKELSHKSSLT 970 (986)
Q Consensus 928 ~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~l~ 970 (986)
+|+.||+.|+..++|..||++|+ .||+|..|++.|.+.+.|.
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred CcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccceeE
Confidence 68888888888888888888888 5788888888888877764
No 15
>PHA00733 hypothetical protein
Probab=98.69 E-value=1.2e-08 Score=93.71 Aligned_cols=56 Identities=25% Similarity=0.462 Sum_probs=28.6
Q ss_pred cccCCcccCCCCCcccCCcchhHHHhhhhCCCCccCCccccccCChhhHHHHhhhhc
Q psy17107 695 LHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQ 751 (986)
Q Consensus 695 ~h~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~H~ 751 (986)
.++..||.|+.||+.|.+...|..|++.| ..+|.|++|+++|.....|..|+...+
T Consensus 68 ~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~F~~~~sL~~H~~~~h 123 (128)
T PHA00733 68 SKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKEFRNTDSTLDHVCKKH 123 (128)
T ss_pred cCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence 33333555555555555555555555544 224555555555555555555554433
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.60 E-value=1.9e-08 Score=74.72 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=17.6
Q ss_pred ccCCCCCcccCCcchhHHHhhhhCCCCccCCccccccCChh
Q psy17107 701 YKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKS 741 (986)
Q Consensus 701 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~ 741 (986)
|+|+.||+.|.+.++|..||++|+ .||+|..|++.|...+
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s 45 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTG 45 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccc
Confidence 444444444444444444444444 2444444444444333
No 17
>KOG3993|consensus
Probab=98.49 E-value=3e-08 Score=103.48 Aligned_cols=201 Identities=17% Similarity=0.263 Sum_probs=93.9
Q ss_pred cccCcccccccCchhHHHHhh--hccCCccccccCCCcccChhhHHHHhhhcCCCcccCC--CC-CC-cCCCchhHHHHh
Q psy17107 512 YKCDLCSKELSHKSSLTEHMK--LHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCD--LC-SK-ELSHKSSLTEHM 585 (986)
Q Consensus 512 ~~C~~C~k~f~~~~~L~~H~~--~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~--~C-~~-~f~~~~~l~~H~ 585 (986)
|.|.+|...|.+...|.+|.- |-. ..|+|+.|+|.|+-..+|..|.|.|..++=.=. .= .+ .-......+.=.
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC~RIV~-vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~ 346 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRCPRIVH-VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE 346 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccCCeeEE-eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence 677777777777777777752 211 247777777777777777777777754221000 00 00 000000000000
Q ss_pred hh---ccCccccccccCccCCCchhHHHHHhhhCCCcccCCCCCcccccchhHHHHhhhccCCccccccccccccccccc
Q psy17107 586 KL---HQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSL 662 (986)
Q Consensus 586 ~~---h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~L 662 (986)
|. -....|.|.+|++.|.+...|+.|+.+|+..+-.=.. .-.|..... .+.-+-|..|+-.+.....-
T Consensus 347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~-a~~f~~s~~--------~~l~~~~~~~a~h~~a~~~~ 417 (500)
T KOG3993|consen 347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEK-APKFLLSRV--------IPLMHFNQAVATHSSASDSH 417 (500)
T ss_pred ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhc-ccCcchhhc--------cccccccccccccccccccc
Confidence 00 0001355666666666666666665555431100000 000000000 00013455555444444333
Q ss_pred ccccccccC--CcccccccCcccccccchhcccccccCC-cccCCCCCcccCCcchhHHHhhh
Q psy17107 663 TEHMKLHQG--IRYKCDLCSKELSHKSSLTEHMKLHQGI-RYKCDLCSKELSHKSSLTEHMKL 722 (986)
Q Consensus 663 ~~H~~~H~~--~~~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~C~~C~k~f~~~~~L~~H~~~ 722 (986)
-.+..-+.+ +...|++|+-.+.++..--.+.+.-..+ .|.|.+|.-+|.+..+|.+|+..
T Consensus 418 g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~ 480 (500)
T KOG3993|consen 418 GDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINK 480 (500)
T ss_pred ccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhh
Confidence 333333322 2445666666666665555554433222 57777777777777777777543
No 18
>KOG3993|consensus
Probab=98.40 E-value=1.2e-07 Score=99.02 Aligned_cols=203 Identities=16% Similarity=0.244 Sum_probs=125.3
Q ss_pred ccccccCCCcccChhhHHHHhhhcCC-CcccCCCCCCcCCCchhHHHHhhhccCcccccccc----CccCCCchhHHHHH
Q psy17107 538 RYKCDLCSKELSHKSSLTEHMKLHQG-IRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLC----SKELSHKSSLTEHM 612 (986)
Q Consensus 538 ~~~C~~C~~~f~~~~~L~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C----~~~f~~~~~L~~H~ 612 (986)
.|.|.+|...|.+.-.|.+|.-.--- ..|+|++|+|.|+-..+|..|.|+|-..+-.=..= .+.-.+....+.=.
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~ 346 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE 346 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence 38999999999999999998642111 45999999999999999999999985431000000 00000000000000
Q ss_pred hh---hCCCcccCCCCCcccccchhHHHHhhhccCCcccccccccccccccccccccccccCCcccccccCcccccccch
Q psy17107 613 KL---HQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSL 689 (986)
Q Consensus 613 ~~---h~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~k~f~~~~~L 689 (986)
|. -+...|.|.+|+|.|.++.-|+.|+..|+..+-.=.. .-.|.... -.+.-+-|..|+-.+.....-
T Consensus 347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~-a~~f~~s~--------~~~l~~~~~~~a~h~~a~~~~ 417 (500)
T KOG3993|consen 347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEK-APKFLLSR--------VIPLMHFNQAVATHSSASDSH 417 (500)
T ss_pred ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhc-ccCcchhh--------ccccccccccccccccccccc
Confidence 00 0113577888888888888888887777653210000 00111000 011235677888777777666
Q ss_pred hcccccccCC--cccCCCCCcccCCcchhHHHhhhhC-CCCccCCccccccCChhhHHHHhhh
Q psy17107 690 TEHMKLHQGI--RYKCDLCSKELSHKSSLTEHMKLHQ-GIRYKCDLCSKELSHKSSLTEHMKL 749 (986)
Q Consensus 690 ~~H~~~h~~~--~~~C~~C~k~f~~~~~L~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~ 749 (986)
-.+...+.+. ..-|++||-.+.++..=-.+.+.-. ...|.|.+|..+|.+...|.+|+..
T Consensus 418 g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~ 480 (500)
T KOG3993|consen 418 GDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINK 480 (500)
T ss_pred ccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhh
Confidence 6666666554 5779999988887776555544322 2369999999999999999999865
No 19
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.36 E-value=1.9e-07 Score=59.17 Aligned_cols=25 Identities=48% Similarity=0.982 Sum_probs=22.3
Q ss_pred HHHHHhhhhcCC-ccccCCCCccccc
Q psy17107 941 HLTRHMKLHQGV-RYKCDLCSKELSH 965 (986)
Q Consensus 941 ~L~~H~~~H~~~-~~~C~~C~~~f~~ 965 (986)
+|..||++|+|+ ||+|++|+++|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 588999999999 8999999999974
No 20
>PHA00616 hypothetical protein
Probab=98.26 E-value=3.3e-07 Score=64.61 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=30.8
Q ss_pred ccccCCCCccccchhhHHHHHhhccCCCCcCCC
Q psy17107 953 RYKCDLCSKELSHKSSLTEHMKLHQGRTYETTP 985 (986)
Q Consensus 953 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~~~ 985 (986)
||.|+.||+.|.+++.|..|++.|+|++|+.++
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 689999999999999999999999999999875
No 21
>KOG1146|consensus
Probab=98.07 E-value=3.6e-06 Score=100.94 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=71.6
Q ss_pred cccCCCCCeeeccccccccccc--ccc---ceecccccCcccccchhhccccccccCCCcccccccccccChHHHHHHhh
Q psy17107 873 CKCDLCSKEFTHKSSLTEDMKL--HQG---IRYKCDFCSKEFSCKSYLTGHIKLHQGIKNKCVLCSKEFSRKSHLTRHMK 947 (986)
Q Consensus 873 ~~C~~C~k~f~~~~~L~~H~~~--H~~---~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~L~~H~~ 947 (986)
..|.+|...|.....+..|-+- +.. +-+.|..|++.|.....+. |+-+- .+..|.+|.-.|.....|..|.+
T Consensus 1229 l~~~~~e~~f~~~~~~~~~a~~~~~~~~~sGe~~c~~~~~~~~~~~~~~-~l~~~--~~~~~~~~~~~~~~~~~l~~~~~ 1305 (1406)
T KOG1146|consen 1229 LLPNALEQPFPQEPEPTATAPPKPPELPASGEGECGAVDELLTPSFGIS-TLDVT--HRYLCRQCKMAFDGEAPLTAHQR 1305 (1406)
T ss_pred ccHHhhhcCccCcccccccCCCCCCcCcCCCcchhhhccccccCcccee-ecccc--hhHHHHHHHhhhcchhHHHHHHH
Confidence 3477777777777777666442 211 1278888888888777776 55331 12278888888888888888874
Q ss_pred hh-----------------cCC-ccccCCCCccccchhhHHHHHhhccCC
Q psy17107 948 LH-----------------QGV-RYKCDLCSKELSHKSSLTEHMKLHQGR 979 (986)
Q Consensus 948 ~H-----------------~~~-~~~C~~C~~~f~~~~~l~~H~~~H~~~ 979 (986)
.- .+- .| |.+|...|.....|++||++=.++
T Consensus 1306 k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~~~~~alqihm~~~~~~ 1354 (1406)
T KOG1146|consen 1306 KFCFAGRGSGGSMPPPLRVPDCTYH-CLACEVLLSGREALQIHMRSSAHR 1354 (1406)
T ss_pred HHHhccCccccCCCCcccCcccccc-chHHHhhcchhHHHHHHHHHhhhc
Confidence 32 222 46 999999999999999999975443
No 22
>PHA00732 hypothetical protein
Probab=97.91 E-value=6.9e-06 Score=67.90 Aligned_cols=21 Identities=24% Similarity=0.600 Sum_probs=8.5
Q ss_pred ccCCccccccCChhhHHHHhh
Q psy17107 728 YKCDLCSKELSHKSSLTEHMK 748 (986)
Q Consensus 728 ~~C~~C~~~f~~~~~l~~H~~ 748 (986)
|.|+.||++|.+.++|+.|++
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r 22 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHAR 22 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhh
Confidence 334444444444444444433
No 23
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.91 E-value=4.8e-06 Score=52.80 Aligned_cols=22 Identities=45% Similarity=0.969 Sum_probs=10.1
Q ss_pred HHHHhhhhcCC-CCCCCCCcccc
Q psy17107 743 LTEHMKLHQGI-RYKCDLCSKEL 764 (986)
Q Consensus 743 l~~H~~~H~~~-~~~C~~C~~~f 764 (986)
|..||++|+|+ ||.|++|+++|
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F 24 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSF 24 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEE
T ss_pred HHHHhhhcCCCCCCCCCCCcCee
Confidence 44444444444 44444444444
No 24
>KOG1146|consensus
Probab=97.83 E-value=1.1e-05 Score=96.95 Aligned_cols=100 Identities=18% Similarity=0.315 Sum_probs=73.7
Q ss_pred ccccccCcccccccchhcccccccCC-----cccCCCCCcccCCcchhHHHhhhhCCCCccCCccccccCChhhHHHHhh
Q psy17107 674 YKCDLCSKELSHKSSLTEHMKLHQGI-----RYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMK 748 (986)
Q Consensus 674 ~~C~~C~k~f~~~~~L~~H~~~h~~~-----~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~ 748 (986)
..|..|...|.....+..|-+--..+ .+.|..|++.|+....+. |+-+- .+|.|..|...|...+-|..|.+
T Consensus 1229 l~~~~~e~~f~~~~~~~~~a~~~~~~~~~sGe~~c~~~~~~~~~~~~~~-~l~~~--~~~~~~~~~~~~~~~~~l~~~~~ 1305 (1406)
T KOG1146|consen 1229 LLPNALEQPFPQEPEPTATAPPKPPELPASGEGECGAVDELLTPSFGIS-TLDVT--HRYLCRQCKMAFDGEAPLTAHQR 1305 (1406)
T ss_pred ccHHhhhcCccCcccccccCCCCCCcCcCCCcchhhhccccccCcccee-ecccc--hhHHHHHHHhhhcchhHHHHHHH
Confidence 56889999999999888876532211 489999999999988887 66542 27999999999999999999985
Q ss_pred hhc-----------------CCCCCCCCCcccccCchhHHHHHHh
Q psy17107 749 LHQ-----------------GIRYKCDLCSKELSHKSSLTEHMKL 776 (986)
Q Consensus 749 ~H~-----------------~~~~~C~~C~~~f~~~~~l~~H~~~ 776 (986)
.-. ...|-|..|...|.....|..||++
T Consensus 1306 k~~~~~~~~~~~~~~~l~~~d~~~~c~~c~~~~~~~~alqihm~~ 1350 (1406)
T KOG1146|consen 1306 KFCFAGRGSGGSMPPPLRVPDCTYHCLACEVLLSGREALQIHMRS 1350 (1406)
T ss_pred HHHhccCccccCCCCcccCccccccchHHHhhcchhHHHHHHHHH
Confidence 321 0112277777777777777777764
No 25
>PHA00732 hypothetical protein
Probab=97.82 E-value=1.4e-05 Score=66.07 Aligned_cols=48 Identities=25% Similarity=0.530 Sum_probs=35.9
Q ss_pred cccCCCCCcccCCcchhHHHhhh-hCCCCccCCccccccCChhhHHHHhhhhcC
Q psy17107 700 RYKCDLCSKELSHKSSLTEHMKL-HQGIRYKCDLCSKELSHKSSLTEHMKLHQG 752 (986)
Q Consensus 700 ~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~C~~C~~~f~~~~~l~~H~~~H~~ 752 (986)
||.|+.||+.|.+..+|+.|++. |+ ++.|+.||++|. .|..|++...+
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~~~~ 49 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYSQYD 49 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---ChhhhhcccCC
Confidence 57888888888888888888874 55 367888888886 47777766554
No 26
>PHA00616 hypothetical protein
Probab=97.74 E-value=1.3e-05 Score=56.70 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=11.5
Q ss_pred ccCCccccccCChhhHHHHhhhhcCC
Q psy17107 728 YKCDLCSKELSHKSSLTEHMKLHQGI 753 (986)
Q Consensus 728 ~~C~~C~~~f~~~~~l~~H~~~H~~~ 753 (986)
|+|+.||+.|.++++|..|++.|+|.
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhcCC
Confidence 44444444444444444444444443
No 27
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.51 E-value=4.8e-05 Score=46.90 Aligned_cols=23 Identities=52% Similarity=1.035 Sum_probs=17.6
Q ss_pred cccCCCCccccchhhHHHHHhhc
Q psy17107 954 YKCDLCSKELSHKSSLTEHMKLH 976 (986)
Q Consensus 954 ~~C~~C~~~f~~~~~l~~H~~~H 976 (986)
|+|++||++|.++..|..||+.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 67777888888888888887764
No 28
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.31 E-value=0.00025 Score=54.41 Aligned_cols=47 Identities=30% Similarity=0.616 Sum_probs=19.8
Q ss_pred ccCCccccccCChhhHHHHhhh-hcCC--CCCCCCCcccccCchhHHHHHHhh
Q psy17107 728 YKCDLCSKELSHKSSLTEHMKL-HQGI--RYKCDLCSKELSHKSSLTEHMKLH 777 (986)
Q Consensus 728 ~~C~~C~~~f~~~~~l~~H~~~-H~~~--~~~C~~C~~~f~~~~~l~~H~~~h 777 (986)
|.||.|++ -.+...|..|... |.+. .+.|++|...+.. +|..|+..+
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~--~l~~Hl~~~ 52 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVTD--NLIRHLNSQ 52 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhhh--HHHHHHHHh
Confidence 44445554 2233444444332 2222 3445555443332 455555443
No 29
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.31 E-value=0.00012 Score=65.22 Aligned_cols=73 Identities=25% Similarity=0.505 Sum_probs=16.9
Q ss_pred cccccCcccccchhhccccccccCCCcccccccccccChHHHHHHhhhhcCCccccCCCCccccchhhHHHHHhhc
Q psy17107 901 KCDFCSKEFSCKSYLTGHIKLHQGIKNKCVLCSKEFSRKSHLTRHMKLHQGVRYKCDLCSKELSHKSSLTEHMKLH 976 (986)
Q Consensus 901 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~H 976 (986)
+|.+|+..|.+...|..|+...++.... ....+.....|..+.+.-.++++.|.+|++.|.+...|..||+.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP---DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ---------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Cccccccccccccccccccccccccccc---cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 4666777777777777776554442210 122222444444454444444577777777777777777777753
No 30
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.26 E-value=0.00039 Score=53.37 Aligned_cols=49 Identities=27% Similarity=0.583 Sum_probs=35.7
Q ss_pred cccCCCCCcccCCcchhHHHhhhhC-CC--CccCCccccccCChhhHHHHhhhhc
Q psy17107 700 RYKCDLCSKELSHKSSLTEHMKLHQ-GI--RYKCDLCSKELSHKSSLTEHMKLHQ 751 (986)
Q Consensus 700 ~~~C~~C~k~f~~~~~L~~H~~~h~-~~--~~~C~~C~~~f~~~~~l~~H~~~H~ 751 (986)
.|.||+||+. .+...|..|....+ +. .+.||+|...+. .+|..|+..++
T Consensus 2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 4789999994 55678888866543 32 688999988655 48888887764
No 31
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.23 E-value=0.00012 Score=45.09 Aligned_cols=21 Identities=48% Similarity=0.915 Sum_probs=9.4
Q ss_pred cCCCCCcccCCcchhHHHhhh
Q psy17107 702 KCDLCSKELSHKSSLTEHMKL 722 (986)
Q Consensus 702 ~C~~C~k~f~~~~~L~~H~~~ 722 (986)
+|++||+.|.+...|+.|++.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHhH
Confidence 344444444444444444443
No 32
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.17 E-value=0.00018 Score=63.99 Aligned_cols=73 Identities=25% Similarity=0.508 Sum_probs=16.9
Q ss_pred cCCCCCcccCCcchhHHHhhhhCCCCccCCccccccCChhhHHHHhhhhcCCCCCCCCCcccccCchhHHHHHHhh
Q psy17107 702 KCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLH 777 (986)
Q Consensus 702 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~h 777 (986)
+|..|+..|.+...|..||...++.... ....+.....+..+++.-....+.|.+|++.|.+...|..||+.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP---DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ---------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Cccccccccccccccccccccccccccc---cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 4677777777777777777665553221 122223444444444433333577777777777777777777653
No 33
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.02 E-value=0.00039 Score=43.27 Aligned_cols=24 Identities=38% Similarity=0.931 Sum_probs=17.1
Q ss_pred cccCCCCccccchhhHHHHHhhcc
Q psy17107 954 YKCDLCSKELSHKSSLTEHMKLHQ 977 (986)
Q Consensus 954 ~~C~~C~~~f~~~~~l~~H~~~H~ 977 (986)
|.|++|++.|.+...|+.|+++|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 678888888888888888887764
No 34
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.90 E-value=0.00049 Score=44.27 Aligned_cols=26 Identities=38% Similarity=0.713 Sum_probs=21.6
Q ss_pred ccccCCCCccccchhhHHHHHhhccC
Q psy17107 953 RYKCDLCSKELSHKSSLTEHMKLHQG 978 (986)
Q Consensus 953 ~~~C~~C~~~f~~~~~l~~H~~~H~~ 978 (986)
||.|++|++.|.+...|..|++.|.+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 57888888888888888888888754
No 35
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.75 E-value=0.00072 Score=42.00 Aligned_cols=23 Identities=39% Similarity=0.954 Sum_probs=10.3
Q ss_pred ccCCCCCcccCCcchhHHHhhhh
Q psy17107 701 YKCDLCSKELSHKSSLTEHMKLH 723 (986)
Q Consensus 701 ~~C~~C~k~f~~~~~L~~H~~~h 723 (986)
|.|++|++.|.+...|+.|+++|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 34555555555555555554443
No 36
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.42 E-value=0.0018 Score=46.80 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=22.3
Q ss_pred HHHhhhhcCC--ccccCCCCccccchhhHHHHHhhccCCCC
Q psy17107 943 TRHMKLHQGV--RYKCDLCSKELSHKSSLTEHMKLHQGRTY 981 (986)
Q Consensus 943 ~~H~~~H~~~--~~~C~~C~~~f~~~~~l~~H~~~H~~~~~ 981 (986)
..+.+.|... |-.|++|+..+++..+|++|+.++++.+|
T Consensus 12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 4454444432 77888888888888888888888877766
No 37
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.32 E-value=0.002 Score=41.36 Aligned_cols=23 Identities=43% Similarity=0.847 Sum_probs=9.7
Q ss_pred ccCCccccccCChhhHHHHhhhh
Q psy17107 728 YKCDLCSKELSHKSSLTEHMKLH 750 (986)
Q Consensus 728 ~~C~~C~~~f~~~~~l~~H~~~H 750 (986)
|.|..|++.|.+..+|..|++.|
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCccCCccCChhHHHHHhHHh
Confidence 34444444444444444444433
No 38
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.28 E-value=0.0031 Score=39.86 Aligned_cols=24 Identities=46% Similarity=0.909 Sum_probs=17.5
Q ss_pred cccCCCCccccchhhHHHHHhhcc
Q psy17107 954 YKCDLCSKELSHKSSLTEHMKLHQ 977 (986)
Q Consensus 954 ~~C~~C~~~f~~~~~l~~H~~~H~ 977 (986)
|.|+.|+++|.+.+.|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 567777777777777777777664
No 39
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.95 E-value=0.0041 Score=38.64 Aligned_cols=24 Identities=50% Similarity=0.816 Sum_probs=18.6
Q ss_pred cccCCCCccccchhhHHHHHhhccC
Q psy17107 954 YKCDLCSKELSHKSSLTEHMKLHQG 978 (986)
Q Consensus 954 ~~C~~C~~~f~~~~~l~~H~~~H~~ 978 (986)
|+|+.|+++.+ ++.|..|++.|+|
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 78999998888 8899999988765
No 40
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=95.78 E-value=0.0051 Score=62.65 Aligned_cols=22 Identities=36% Similarity=0.806 Sum_probs=11.8
Q ss_pred CcccCCC--CCcccccchhHHHHh
Q psy17107 618 IRYKCDL--CSKELSHKSSLTEHM 639 (986)
Q Consensus 618 ~~~~C~~--C~~~f~~~~~L~~H~ 639 (986)
+||+|++ |+|.+++...|+.|+
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~ 371 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHM 371 (423)
T ss_pred ceecCCCCCchhhhccccchhhhh
Confidence 4555543 555555555555554
No 41
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=95.57 E-value=0.0076 Score=61.40 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=46.3
Q ss_pred cCCCCcccCC--cccccCCCCCCccccccccCC----CCCcccccccccc-ccccCcccccCCCCCeeeccccccccc
Q psy17107 822 IELHPNEHHL--IGIKFGPSGNRTRDLALTLIP----GNPYFILEISKVD-RKRVGIRCKCDLCSKEFTHKSSLTEDM 892 (986)
Q Consensus 822 ~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~----~~p~~~~~~~~~~-~~~~~~~~~C~~C~k~f~~~~~L~~H~ 892 (986)
.+++||+|++ |.+.+.....|.-|+.--|.. ++|- ..+.. .....|||+|++|+|.|+....|+.|.
T Consensus 345 ~d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~----p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 345 KDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPS----PEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred ecCceecCCCCCchhhhccccchhhhhhccccCcccCCCCC----ccccccccccCCceeccccchhhccCccceecc
Confidence 3569999986 777888888888777633322 2221 11111 223338999999999999999999994
No 42
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.32 E-value=0.014 Score=36.78 Aligned_cols=19 Identities=47% Similarity=0.882 Sum_probs=7.6
Q ss_pred CCccccccCChhhHHHHhh
Q psy17107 730 CDLCSKELSHKSSLTEHMK 748 (986)
Q Consensus 730 C~~C~~~f~~~~~l~~H~~ 748 (986)
|+.|+++|.+...|..|++
T Consensus 3 C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 3 CPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCcchhCCHHHHHHHHH
Confidence 3334444444444444433
No 43
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.27 E-value=0.0094 Score=37.41 Aligned_cols=23 Identities=35% Similarity=0.892 Sum_probs=17.9
Q ss_pred cccCCCCccccchhhHHHHHhhc
Q psy17107 954 YKCDLCSKELSHKSSLTEHMKLH 976 (986)
Q Consensus 954 ~~C~~C~~~f~~~~~l~~H~~~H 976 (986)
|.|++|++.|.+...|+.|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 56888888888888888888764
No 44
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=95.19 E-value=0.015 Score=42.24 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=16.5
Q ss_pred hcccccccCC--cccCCCCCcccCCcchhHHHhhhhCC
Q psy17107 690 TEHMKLHQGI--RYKCDLCSKELSHKSSLTEHMKLHQG 725 (986)
Q Consensus 690 ~~H~~~h~~~--~~~C~~C~k~f~~~~~L~~H~~~h~~ 725 (986)
..+.+.+... |-.|++|+..+.+..+|++|+.+.++
T Consensus 12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~ 49 (54)
T PF09237_consen 12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHF 49 (54)
T ss_dssp ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence 4444443332 66666666666666666666665554
No 45
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=94.40 E-value=0.018 Score=35.69 Aligned_cols=22 Identities=55% Similarity=0.896 Sum_probs=9.2
Q ss_pred ccCCCCCcccCCcchhHHHhhhh
Q psy17107 701 YKCDLCSKELSHKSSLTEHMKLH 723 (986)
Q Consensus 701 ~~C~~C~k~f~~~~~L~~H~~~h 723 (986)
|+|+.|+.... ...|..|+++|
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhh
Confidence 34444444444 44444444443
No 46
>KOG2231|consensus
Probab=94.04 E-value=0.037 Score=64.14 Aligned_cols=54 Identities=17% Similarity=0.454 Sum_probs=28.4
Q ss_pred cccccCcccccccchhcccccccCCcccC---CCCCcccCCcchhHHHhhhhCCCCccCC
Q psy17107 675 KCDLCSKELSHKSSLTEHMKLHQGIRYKC---DLCSKELSHKSSLTEHMKLHQGIRYKCD 731 (986)
Q Consensus 675 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~C---~~C~k~f~~~~~L~~H~~~h~~~~~~C~ 731 (986)
.|..|...|.....|..|++.+...-.-| +.++.-|.....|..|.+.++ |.|.
T Consensus 184 ~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~H---flCE 240 (669)
T KOG2231|consen 184 LCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGH---FLCE 240 (669)
T ss_pred cchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcC---cccc
Confidence 36666666666666666666543221122 122344555566666666554 4555
No 47
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=93.88 E-value=0.024 Score=35.53 Aligned_cols=20 Identities=40% Similarity=0.966 Sum_probs=9.0
Q ss_pred cCCccccccCChhhHHHHhh
Q psy17107 729 KCDLCSKELSHKSSLTEHMK 748 (986)
Q Consensus 729 ~C~~C~~~f~~~~~l~~H~~ 748 (986)
.|++|++.|.+...|+.|++
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHC
Confidence 34444444444444444443
No 48
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=93.69 E-value=0.023 Score=36.40 Aligned_cols=22 Identities=41% Similarity=0.818 Sum_probs=17.3
Q ss_pred cccCCCCccccchhhHHHHHhh
Q psy17107 954 YKCDLCSKELSHKSSLTEHMKL 975 (986)
Q Consensus 954 ~~C~~C~~~f~~~~~l~~H~~~ 975 (986)
|.|..|++.|.+...|..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 6688888888888888888765
No 49
>KOG2785|consensus
Probab=93.35 E-value=0.11 Score=55.33 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=48.7
Q ss_pred cccCCCCCcccCCcchhHHHhhhhCCC--CccCCccccccCChhhHHHHhhhhcCCCCCCCCCc---ccccCchhHHHHH
Q psy17107 700 RYKCDLCSKELSHKSSLTEHMKLHQGI--RYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCS---KELSHKSSLTEHM 774 (986)
Q Consensus 700 ~~~C~~C~k~f~~~~~L~~H~~~h~~~--~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~C~~C~---~~f~~~~~l~~H~ 774 (986)
|-.|-.|++.|.+...-..||..++|. |= -.-......|..=+..-.+..|.|-.|+ +.|.+..+.+.||
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPd-----reYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM 240 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPD-----REYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHM 240 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhccCCcCCc-----hHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHH
Confidence 466777888877777777787777773 20 0011223333333333334457888888 8899999999998
Q ss_pred Hh--hCCCCC
Q psy17107 775 KL--HQGIRY 782 (986)
Q Consensus 775 ~~--h~~~~~ 782 (986)
.. |-..||
T Consensus 241 ~~K~HCkl~y 250 (390)
T KOG2785|consen 241 RDKGHCKLPY 250 (390)
T ss_pred hhccCcccCC
Confidence 54 544555
No 50
>KOG2231|consensus
Probab=93.17 E-value=0.089 Score=61.12 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=31.5
Q ss_pred ccCcccCccccCchhhhhhhhhccccccccCCC------Ccccccccchhhhccccc
Q psy17107 269 NKCVLCSKEFSRKSHLTRHMKLHQGVRYKCDLC------SKELSHKSSLTEHMKLHQ 319 (986)
Q Consensus 269 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C------~~~f~~~~~L~~H~~~h~ 319 (986)
+.|..|...|.....|.+|++.++. .|-.| +..|.....|..|-+.++
T Consensus 183 p~C~~C~~~fld~~el~rH~~~~h~---~chfC~~~~~~neyy~~~~dLe~HfR~~H 236 (669)
T KOG2231|consen 183 PLCKFCHERFLDDDELYRHLRFDHE---FCHFCDYKTGQNEYYNDYDDLEEHFRKGH 236 (669)
T ss_pred ccchhhhhhhccHHHHHHhhcccee---heeecCcccccchhcccchHHHHHhhhcC
Confidence 4688888888888888888876653 34444 345666667777766543
No 51
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=93.11 E-value=0.043 Score=35.12 Aligned_cols=22 Identities=41% Similarity=0.785 Sum_probs=13.4
Q ss_pred ecccccCcccccchhhcccccc
Q psy17107 900 YKCDFCSKEFSCKSYLTGHIKL 921 (986)
Q Consensus 900 ~~C~~C~k~f~~~~~L~~H~~~ 921 (986)
|.|++|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 4566666666666666666554
No 52
>PRK04860 hypothetical protein; Provisional
Probab=92.45 E-value=0.056 Score=51.75 Aligned_cols=35 Identities=29% Similarity=0.843 Sum_probs=17.1
Q ss_pred cccCCCCCcccCCcchhHHHhhhhCCC-CccCCccccccC
Q psy17107 700 RYKCDLCSKELSHKSSLTEHMKLHQGI-RYKCDLCSKELS 738 (986)
Q Consensus 700 ~~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~C~~C~~~f~ 738 (986)
+|.|. |++ ....+++|.++|+|+ +|.|..|+..|.
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~ 154 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLV 154 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeE
Confidence 45554 544 444455555555543 455555554443
No 53
>PRK04860 hypothetical protein; Provisional
Probab=92.37 E-value=0.042 Score=52.57 Aligned_cols=38 Identities=29% Similarity=0.808 Sum_probs=28.0
Q ss_pred cccccccCcccccccchhcccccccCC-cccCCCCCcccCCcc
Q psy17107 673 RYKCDLCSKELSHKSSLTEHMKLHQGI-RYKCDLCSKELSHKS 714 (986)
Q Consensus 673 ~~~C~~C~k~f~~~~~L~~H~~~h~~~-~~~C~~C~k~f~~~~ 714 (986)
+|.|. |++ ....+++|.++|+|+ +|.|..|+..|....
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 67787 776 667777888888776 688888887776543
No 54
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=91.78 E-value=0.094 Score=60.91 Aligned_cols=114 Identities=30% Similarity=0.537 Sum_probs=96.3
Q ss_pred cccccCCCCCeeecccccccccc--ccccc--e-eccc--ccCcccccchhhccccccccCCCc----------------
Q psy17107 871 IRCKCDLCSKEFTHKSSLTEDMK--LHQGI--R-YKCD--FCSKEFSCKSYLTGHIKLHQGIKN---------------- 927 (986)
Q Consensus 871 ~~~~C~~C~k~f~~~~~L~~H~~--~H~~~--~-~~C~--~C~k~f~~~~~L~~H~~~H~~~~~---------------- 927 (986)
.++.|..|...|.....|..|.+ .|.++ . +.|+ .|++.|.+...|..|..+|++..+
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence 46889999999999999999999 89988 6 9999 799999999999999999987432
Q ss_pred --------------------ccc--cccccccChHHHHHHhhhhcCC---ccccCCCCccccchhhHHHHHhhccCCCCc
Q psy17107 928 --------------------KCV--LCSKEFSRKSHLTRHMKLHQGV---RYKCDLCSKELSHKSSLTEHMKLHQGRTYE 982 (986)
Q Consensus 928 --------------------~C~--~C~~~f~~~~~L~~H~~~H~~~---~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~ 982 (986)
.+. .|-..+.....+..|...|... .+.+..|++.|.....|..|++.|....+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (467)
T COG5048 368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447 (467)
T ss_pred CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCce
Confidence 122 2777778888888888887654 589999999999999999999999877665
Q ss_pred CC
Q psy17107 983 TT 984 (986)
Q Consensus 983 ~~ 984 (986)
-+
T Consensus 448 ~~ 449 (467)
T COG5048 448 LC 449 (467)
T ss_pred ee
Confidence 44
No 55
>KOG2785|consensus
Probab=91.65 E-value=0.19 Score=53.57 Aligned_cols=71 Identities=21% Similarity=0.424 Sum_probs=49.4
Q ss_pred cccccccCcccccccchhcccccccCC--cccCCCCCcccCCcchhHHHhhhhCCCCccCCccc---cccCChhhHHHHh
Q psy17107 673 RYKCDLCSKELSHKSSLTEHMKLHQGI--RYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCS---KELSHKSSLTEHM 747 (986)
Q Consensus 673 ~~~C~~C~k~f~~~~~L~~H~~~h~~~--~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~---~~f~~~~~l~~H~ 747 (986)
|-.|=.|++.|.+...-..||..++|. |=. .-......|..=+..--+.-|.|-.|+ +.|.+..+.+.||
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdr-----eYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM 240 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDR-----EYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHM 240 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhccCCcCCch-----HhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHH
Confidence 678999999999999999999998884 200 001334444444444444457777777 7888888888887
Q ss_pred h
Q psy17107 748 K 748 (986)
Q Consensus 748 ~ 748 (986)
.
T Consensus 241 ~ 241 (390)
T KOG2785|consen 241 R 241 (390)
T ss_pred h
Confidence 4
No 56
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=91.55 E-value=0.13 Score=59.81 Aligned_cols=54 Identities=35% Similarity=0.667 Sum_probs=27.3
Q ss_pred cccCCCCCcccccchhHHHHhh--hccCC---ccccc--ccccccccccccccccccccCC
Q psy17107 619 RYKCDLCSKELSHKSSLTEHMK--LHQGI---RYKCD--LCSKELSHKSSLTEHMKLHQGI 672 (986)
Q Consensus 619 ~~~C~~C~~~f~~~~~L~~H~~--~H~~~---~~~C~--~C~~~f~~~~~L~~H~~~H~~~ 672 (986)
++.|..|...|.....|..|.+ .|+++ ++.|+ .|++.|.+...+..|..+|++.
T Consensus 289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (467)
T COG5048 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI 349 (467)
T ss_pred CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCC
Confidence 4555555555555555555555 44443 44454 4555555555555555554443
No 57
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.22 E-value=0.25 Score=51.30 Aligned_cols=135 Identities=21% Similarity=0.431 Sum_probs=83.6
Q ss_pred cccCCC--CCcccccchhHHHHhhhccCCcccccccccccccccccccccccccCCcccccccCcccccccchhcccccc
Q psy17107 619 RYKCDL--CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLH 696 (986)
Q Consensus 619 ~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~k~f~~~~~L~~H~~~h 696 (986)
.|.||. |..+......|+.|.+.-++ .+-|.+|-.. + ..|.| .-...+.+.|+.|...=
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~-~~~C~~C~~n---K------------k~F~~---E~~lF~~~~Lr~H~~~G 211 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHG-FVLCSECIGN---K------------KDFWN---EIRLFRSSTLRDHKNGG 211 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcC-cEEhHhhhcC---c------------ccCcc---ceeeeecccccccccCC
Confidence 577764 55555566778888877555 4667777421 0 01111 11223456677776542
Q ss_pred cCC-c----ccCCCCCcccCCcchhHHHhhhhCCCCccCCcccc-------ccCChhhHHHHhhhhcCCCCCCCC--C--
Q psy17107 697 QGI-R----YKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSK-------ELSHKSSLTEHMKLHQGIRYKCDL--C-- 760 (986)
Q Consensus 697 ~~~-~----~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~-------~f~~~~~l~~H~~~H~~~~~~C~~--C-- 760 (986)
..+ . -.|..|...|-+-..|..|+|.-+. .|.+|++ -|.+-.+|..|-+.-+ |.|.+ |
T Consensus 212 ~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE---~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h---y~ct~qtc~~ 285 (493)
T COG5236 212 LEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHE---ACHICDMVGPIRYQYFKSYEDLEAHFRNAH---YCCTFQTCRV 285 (493)
T ss_pred ccccCcCCCchhhhccceecChHHHHHHHHhhhh---hhhhhhccCccchhhhhCHHHHHHHhhcCc---eEEEEEEEec
Confidence 211 2 3688888888888888888887665 4666654 4777888888876422 44432 2
Q ss_pred --cccccCchhHHHHHHhhC
Q psy17107 761 --SKELSHKSSLTEHMKLHQ 778 (986)
Q Consensus 761 --~~~f~~~~~l~~H~~~h~ 778 (986)
-+.|.....|..|+..-+
T Consensus 286 ~k~~vf~~~~el~~h~~~~h 305 (493)
T COG5236 286 GKCYVFPYHTELLEHLTRFH 305 (493)
T ss_pred CcEEEeccHHHHHHHHHHHh
Confidence 145888899999985544
No 58
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=87.40 E-value=0.46 Score=29.70 Aligned_cols=21 Identities=24% Similarity=0.725 Sum_probs=12.8
Q ss_pred cccCCCCccccchhhHHHHHhh
Q psy17107 954 YKCDLCSKELSHKSSLTEHMKL 975 (986)
Q Consensus 954 ~~C~~C~~~f~~~~~l~~H~~~ 975 (986)
..|++||..| ....|..|+++
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 3566666666 55566666553
No 59
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=85.28 E-value=0.72 Score=28.86 Aligned_cols=19 Identities=26% Similarity=0.772 Sum_probs=9.2
Q ss_pred CCCCCcccccCchhHHHHHH
Q psy17107 756 KCDLCSKELSHKSSLTEHMK 775 (986)
Q Consensus 756 ~C~~C~~~f~~~~~l~~H~~ 775 (986)
.|+.||+.| ....|..|++
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 355555555 4444555543
No 60
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=84.07 E-value=0.66 Score=31.67 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=19.7
Q ss_pred ccccCCCCccccchhhHHHHHhh
Q psy17107 953 RYKCDLCSKELSHKSSLTEHMKL 975 (986)
Q Consensus 953 ~~~C~~C~~~f~~~~~l~~H~~~ 975 (986)
+|-|++|+..|.....+..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 57899999999988888888865
No 61
>KOG2482|consensus
Probab=83.67 E-value=1 Score=47.10 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=33.9
Q ss_pred ccccccCccCCCchhHHHHHhhhCC----------------------------CcccCCCCCcccccchhHHHHhhhc
Q psy17107 593 YKCDLCSKELSHKSSLTEHMKLHQG----------------------------IRYKCDLCSKELSHKSSLTEHMKLH 642 (986)
Q Consensus 593 ~~C~~C~~~f~~~~~L~~H~~~h~~----------------------------~~~~C~~C~~~f~~~~~L~~H~~~H 642 (986)
..|-.|.....+...|..||++-+. ..-.|-.|.-.|.....|..||.-+
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED 357 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence 3566666666666666666654321 1135888888999999999998654
No 62
>KOG2482|consensus
Probab=82.62 E-value=1.6 Score=45.61 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=41.4
Q ss_pred ccCCCCCcccccchhHHHHhhhccC----------------------------Ccccccccccccccccccccccccc
Q psy17107 620 YKCDLCSKELSHKSSLTEHMKLHQG----------------------------IRYKCDLCSKELSHKSSLTEHMKLH 669 (986)
Q Consensus 620 ~~C~~C~~~f~~~~~L~~H~~~H~~----------------------------~~~~C~~C~~~f~~~~~L~~H~~~H 669 (986)
.+|-.|.....+...|..||++-+. ..-.|-.|.-.|.....|..||.-+
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED 357 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence 5899999999999999999976431 0136889999999999999999754
No 63
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.61 E-value=1 Score=47.04 Aligned_cols=99 Identities=27% Similarity=0.550 Sum_probs=52.0
Q ss_pred ccccC--CCCcccCCchhhhhHhhhccCcceecCCCC---cccC------ChhHHHHHhhhcCCc-cc----cCCCCCCc
Q psy17107 133 RYKCD--LCSKDFSCKKHLTRHMKLHQGVRYKCDLCS---KEFS------CKSYLTEHMKLHQGV-RY----KCDLCSKD 196 (986)
Q Consensus 133 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~---~~f~------~~~~L~~H~~~h~~~-~~----~C~~C~~~ 196 (986)
.|.|+ .|..+......|+.|.+..++ .+-|.+|- +.|. ++..|..|...-..+ -| .|..|...
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~-~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~ 229 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHG-FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIY 229 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcC-cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccce
Confidence 46665 355555566777777776554 45566663 2232 234455554322111 12 46666666
Q ss_pred cCCchhHHhHhhhccCCccccCCCCCC-------cCChhhhhhccc
Q psy17107 197 FSCKKHLTRHMKLHQGVRYKCDLCSKD-------FSCKKHLTRHMK 235 (986)
Q Consensus 197 f~~~~~L~~H~~~h~~~~~~C~~C~~~-------f~~~~~L~~H~~ 235 (986)
|-+-..|..|++..++. |-+|++. |.+...|.+|.+
T Consensus 230 FYdDDEL~~HcR~~HE~---ChICD~v~p~~~QYFK~Y~~Le~HF~ 272 (493)
T COG5236 230 FYDDDELRRHCRLRHEA---CHICDMVGPIRYQYFKSYEDLEAHFR 272 (493)
T ss_pred ecChHHHHHHHHhhhhh---hhhhhccCccchhhhhCHHHHHHHhh
Confidence 66666666666665443 4444332 444555555544
No 64
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=81.75 E-value=0.91 Score=30.98 Aligned_cols=22 Identities=27% Similarity=0.724 Sum_probs=12.3
Q ss_pred CccCCccccccCChhhHHHHhh
Q psy17107 727 RYKCDLCSKELSHKSSLTEHMK 748 (986)
Q Consensus 727 ~~~C~~C~~~f~~~~~l~~H~~ 748 (986)
+|.|++|++.|.+...+..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 3555556665555555555553
No 65
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=80.50 E-value=1.1 Score=30.24 Aligned_cols=8 Identities=25% Similarity=0.750 Sum_probs=3.3
Q ss_pred cCCCCCcc
Q psy17107 702 KCDLCSKE 709 (986)
Q Consensus 702 ~C~~C~k~ 709 (986)
+|.+||..
T Consensus 3 ~C~~CGy~ 10 (33)
T cd00350 3 VCPVCGYI 10 (33)
T ss_pred ECCCCCCE
Confidence 34444433
No 66
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=79.66 E-value=1.2 Score=30.08 Aligned_cols=9 Identities=22% Similarity=0.947 Sum_probs=4.6
Q ss_pred cccCCCCCc
Q psy17107 700 RYKCDLCSK 708 (986)
Q Consensus 700 ~~~C~~C~k 708 (986)
++.|++||.
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 455555543
No 67
>KOG2893|consensus
Probab=77.51 E-value=0.68 Score=45.57 Aligned_cols=45 Identities=33% Similarity=0.759 Sum_probs=29.3
Q ss_pred CCCCCcccCCcchhHHHhhhhCCCCccCCccccccCChhhHHHH-hhhh
Q psy17107 703 CDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEH-MKLH 750 (986)
Q Consensus 703 C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H-~~~H 750 (986)
|-+|++.|.+..-|.+|++.- -|+|.+|-|...+.-.|..| |.+|
T Consensus 13 cwycnrefddekiliqhqkak---hfkchichkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKAK---HFKCHICHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred eeecccccchhhhhhhhhhhc---cceeeeehhhhccCCCceeehhhhh
Confidence 677777777777777776643 36777777766666666655 3444
No 68
>KOG2893|consensus
Probab=75.21 E-value=1.2 Score=43.79 Aligned_cols=49 Identities=35% Similarity=0.742 Sum_probs=34.8
Q ss_pred CccCcccCccccCchhhhhhhhhccccccccCCCCcccccccchhhh-ccccc
Q psy17107 268 KNKCVLCSKEFSRKSHLTRHMKLHQGVRYKCDLCSKELSHKSSLTEH-MKLHQ 319 (986)
Q Consensus 268 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H-~~~h~ 319 (986)
++-|-+|++.|.....|..|++.. -|+|-+|.|...+--.|..| |++|.
T Consensus 10 kpwcwycnrefddekiliqhqkak---hfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 10 KPWCWYCNREFDDEKILIQHQKAK---HFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred Cceeeecccccchhhhhhhhhhhc---cceeeeehhhhccCCCceeehhhhhh
Confidence 446778888888887787777643 37888888777777777777 45553
No 69
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.06 E-value=7.1 Score=34.64 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=8.7
Q ss_pred ccccCCCCccccCccchh
Q psy17107 376 RYKCDLCSKELSHKSSLT 393 (986)
Q Consensus 376 ~~~C~~C~k~f~~~~~L~ 393 (986)
|..|++||........|.
T Consensus 15 P~~CpiCgLtLVss~HLA 32 (112)
T TIGR00622 15 PVECPICGLTLILSTHLA 32 (112)
T ss_pred CCcCCcCCCEEeccchHH
Confidence 445555555544444443
No 70
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.12 E-value=6 Score=35.09 Aligned_cols=92 Identities=22% Similarity=0.310 Sum_probs=51.3
Q ss_pred CCcccCCcccccCCCCCCccccccccCCCCCccccccccccccccCcccccCCCCCeeeccccccccccccccceecccc
Q psy17107 825 HPNEHHLIGIKFGPSGNRTRDLALTLIPGNPYFILEISKVDRKRVGIRCKCDLCSKEFTHKSSLTEDMKLHQGIRYKCDF 904 (986)
Q Consensus 825 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~ 904 (986)
-|.+|+.||..-..+..|++.-. -.-+-.+|.-...+. ....-.|--|.+.|........=. .-...+|+|+.
T Consensus 14 LP~~CpiCgLtLVss~HLARSyH-HLfPl~~f~ev~~~~-----~~~~~~C~~C~~~f~~~~~~~~~~-~~~~~~y~C~~ 86 (112)
T TIGR00622 14 LPVECPICGLTLILSTHLARSYH-HLFPLKAFQEIPLEE-----YNGSRFCFGCQGPFPKPPVSPFDE-LKDSHRYVCAV 86 (112)
T ss_pred CCCcCCcCCCEEeccchHHHhhh-ccCCCcccccccccc-----cCCCCcccCcCCCCCCcccccccc-cccccceeCCC
Confidence 47788888887666665554222 111122332110010 111224888888887654222000 11223589999
Q ss_pred cCcccccchhhcccccccc
Q psy17107 905 CSKEFSCKSYLTGHIKLHQ 923 (986)
Q Consensus 905 C~k~f~~~~~L~~H~~~H~ 923 (986)
|...|=-.-++-.|...|.
T Consensus 87 C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 87 CKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred CCCccccccchhhhhhccC
Confidence 9998888888888888883
No 71
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.89 E-value=1.9 Score=44.04 Aligned_cols=40 Identities=28% Similarity=0.641 Sum_probs=23.5
Q ss_pred ecccccCcccccchhhcccccc-c---------cCCCc------ccccccccccCh
Q psy17107 900 YKCDFCSKEFSCKSYLTGHIKL-H---------QGIKN------KCVLCSKEFSRK 939 (986)
Q Consensus 900 ~~C~~C~k~f~~~~~L~~H~~~-H---------~~~~~------~C~~C~~~f~~~ 939 (986)
+.||+|++.|.+...+....++ . .|.-| .|+.||++|...
T Consensus 6 ~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 6 ITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred eECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 5666666666666555555543 1 11222 588888888765
No 72
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=68.75 E-value=2.8 Score=26.48 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=5.7
Q ss_pred cccccccccc
Q psy17107 928 KCVLCSKEFS 937 (986)
Q Consensus 928 ~C~~C~~~f~ 937 (986)
.|+.||+.|.
T Consensus 16 ~Cp~CG~~F~ 25 (26)
T PF10571_consen 16 FCPHCGYDFE 25 (26)
T ss_pred cCCCCCCCCc
Confidence 4666666553
No 73
>KOG2186|consensus
Probab=65.63 E-value=3.1 Score=41.90 Aligned_cols=50 Identities=22% Similarity=0.546 Sum_probs=32.1
Q ss_pred ccCCCCCCcCCCchhHHHHhhhccCccccccccCccCCCchhHHHHHhhhCC
Q psy17107 566 YKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQG 617 (986)
Q Consensus 566 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~ 617 (986)
|.|..||.+.. +..+..|+-.-++.-|.|..|++.|.. .+...|..--++
T Consensus 4 FtCnvCgEsvK-Kp~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~kCITE 53 (276)
T KOG2186|consen 4 FTCNVCGESVK-KPQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTKCITE 53 (276)
T ss_pred Eehhhhhhhcc-ccchHHHHHhccCCeeEEeeccccccc-chhhhhhhhcch
Confidence 56777776654 345555776666666777777777766 666667655443
No 74
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=65.51 E-value=3.9 Score=27.80 Aligned_cols=9 Identities=22% Similarity=0.818 Sum_probs=3.8
Q ss_pred ccCCCCCcc
Q psy17107 701 YKCDLCSKE 709 (986)
Q Consensus 701 ~~C~~C~k~ 709 (986)
|+|.+||..
T Consensus 3 ~~C~~CG~i 11 (34)
T cd00729 3 WVCPVCGYI 11 (34)
T ss_pred EECCCCCCE
Confidence 344444443
No 75
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=59.74 E-value=7.3 Score=28.27 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=17.4
Q ss_pred ccccCCCCCeeeccccccccccccccceecccccCcc
Q psy17107 872 RCKCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSKE 908 (986)
Q Consensus 872 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k~ 908 (986)
.|.|..||..|... .+....|+.||.+
T Consensus 2 ~Y~C~~Cg~~~~~~----------~~~~irC~~CG~r 28 (44)
T smart00659 2 IYICGECGRENEIK----------SKDVVRCRECGYR 28 (44)
T ss_pred EEECCCCCCEeecC----------CCCceECCCCCce
Confidence 36777788776643 2344778877765
No 76
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=59.33 E-value=6.7 Score=27.33 Aligned_cols=33 Identities=21% Similarity=0.508 Sum_probs=16.5
Q ss_pred ccCCCCCeeeccccccccccccccceecccccCcccc
Q psy17107 874 KCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSKEFS 910 (986)
Q Consensus 874 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k~f~ 910 (986)
.|+.|+..|.-..+... -.+....|+.|+..|.
T Consensus 4 ~CP~C~~~~~v~~~~~~----~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLG----ANGGKVRCGKCGHVWY 36 (38)
T ss_pred ECCCCCCEEEeCHHHcC----CCCCEEECCCCCCEEE
Confidence 46666666655543321 1112356666666553
No 77
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=59.26 E-value=7.7 Score=28.46 Aligned_cols=30 Identities=23% Similarity=0.566 Sum_probs=16.9
Q ss_pred ccccCCCCCeeeccccccccccccccceecccccCcccc
Q psy17107 872 RCKCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSKEFS 910 (986)
Q Consensus 872 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k~f~ 910 (986)
.|+|+.||..|....... ...||+||-.+.
T Consensus 3 ~y~C~~CG~~~~~~~~~~---------~~~Cp~CG~~~~ 32 (46)
T PRK00398 3 EYKCARCGREVELDEYGT---------GVRCPYCGYRIL 32 (46)
T ss_pred EEECCCCCCEEEECCCCC---------ceECCCCCCeEE
Confidence 466777776665533221 356777775543
No 78
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=58.98 E-value=5.4 Score=38.03 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=25.2
Q ss_pred ccCCCCCeeecc---ccccc--cccccccceecccccCcccccchhhcccc
Q psy17107 874 KCDLCSKEFTHK---SSLTE--DMKLHQGIRYKCDFCSKEFSCKSYLTGHI 919 (986)
Q Consensus 874 ~C~~C~k~f~~~---~~L~~--H~~~H~~~~~~C~~C~k~f~~~~~L~~H~ 919 (986)
+||+||-.++.. ..+.. .++ ..++|+-||++|.+...+..=+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~----~~~~c~~c~~~f~~~e~~~~~~ 48 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIR----RRRECLACGKRFTTFERVELVP 48 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCcee----eeeeccccCCcceEeEeccCcc
Confidence 699999655221 11111 111 1289999999999877665433
No 79
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=58.38 E-value=6.5 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.527 Sum_probs=14.6
Q ss_pred cccCCCCCeeeccccccccccccccceecccccCc
Q psy17107 873 CKCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSK 907 (986)
Q Consensus 873 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k 907 (986)
|+|..||..|........ +..-.|+.||.
T Consensus 6 y~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~ 34 (41)
T smart00834 6 YRCEDCGHTFEVLQKISD------DPLATCPECGG 34 (41)
T ss_pred EEcCCCCCEEEEEEecCC------CCCCCCCCCCC
Confidence 556666666654332211 23355666665
No 80
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=58.32 E-value=12 Score=33.65 Aligned_cols=25 Identities=24% Similarity=0.630 Sum_probs=17.6
Q ss_pred ccC----CCCCcccccchhHHHHhhhccC
Q psy17107 620 YKC----DLCSKELSHKSSLTEHMKLHQG 644 (986)
Q Consensus 620 ~~C----~~C~~~f~~~~~L~~H~~~H~~ 644 (986)
|.| +.|+..+.+...|++|++.++|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 677 7777777777777777766543
No 81
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=57.67 E-value=6.7 Score=40.03 Aligned_cols=42 Identities=19% Similarity=0.481 Sum_probs=30.6
Q ss_pred cccccCCCCCeeeccccccccccc-ccc----------ce-----ecccccCcccccc
Q psy17107 871 IRCKCDLCSKEFTHKSSLTEDMKL-HQG----------IR-----YKCDFCSKEFSCK 912 (986)
Q Consensus 871 ~~~~C~~C~k~f~~~~~L~~H~~~-H~~----------~~-----~~C~~C~k~f~~~ 912 (986)
+.+.|++|++.|.+..-+....++ ..+ .| ..||.||.+|...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 346899999999998877666553 221 12 4699999998755
No 82
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=53.35 E-value=8.3 Score=29.11 Aligned_cols=30 Identities=17% Similarity=0.521 Sum_probs=16.6
Q ss_pred ccccCCCCCeeeccccccccccccccceecccccCc
Q psy17107 872 RCKCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSK 907 (986)
Q Consensus 872 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k 907 (986)
.|+|..||..|.....+.. +..-.||.||-
T Consensus 5 ey~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~ 34 (52)
T TIGR02605 5 EYRCTACGHRFEVLQKMSD------DPLATCPECGG 34 (52)
T ss_pred EEEeCCCCCEeEEEEecCC------CCCCCCCCCCC
Confidence 3667777777764322211 23356777774
No 83
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=52.78 E-value=11 Score=25.94 Aligned_cols=32 Identities=19% Similarity=0.588 Sum_probs=18.2
Q ss_pred ccCCCCCeeeccccccccccccccceecccccCccc
Q psy17107 874 KCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSKEF 909 (986)
Q Consensus 874 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k~f 909 (986)
.|+.|++.|.-..+... -.|...+|+.|+..|
T Consensus 4 ~Cp~C~~~y~i~d~~ip----~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIP----PKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCC----CCCcEEECCCCCCEe
Confidence 46777777765554321 223346777777665
No 84
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=50.14 E-value=14 Score=28.36 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=19.0
Q ss_pred cccccCCCCCeeeccccccccccccccceecccccCc
Q psy17107 871 IRCKCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSK 907 (986)
Q Consensus 871 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k 907 (986)
..|.|+.||..-..+..- -.-.|.+|+|+.||.
T Consensus 26 v~F~CPnCGe~~I~Rc~~----CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 26 VKFPCPNCGEVEIYRCAK----CRKLGNPYRCPKCGF 58 (61)
T ss_pred eEeeCCCCCceeeehhhh----HHHcCCceECCCcCc
Confidence 456788888654443321 122345688888875
No 85
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=49.71 E-value=11 Score=33.43 Aligned_cols=33 Identities=24% Similarity=0.570 Sum_probs=17.2
Q ss_pred CCCccCcccCccccCchhhhhhhhhccccccccCCCCcccccc
Q psy17107 266 GIKNKCVLCSKEFSRKSHLTRHMKLHQGVRYKCDLCSKELSHK 308 (986)
Q Consensus 266 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~ 308 (986)
|.|..|+.||+.|... ++ .|..|+.||..|.-.
T Consensus 7 GtKR~Cp~CG~kFYDL---nk-------~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYDL---NK-------DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCcccCCCCcchhccC---CC-------CCccCCCCCCccCcc
Confidence 3444566666666432 11 255566666665544
No 86
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=49.11 E-value=12 Score=33.26 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=5.5
Q ss_pred cccCCCCCCcCC
Q psy17107 565 RYKCDLCSKELS 576 (986)
Q Consensus 565 ~~~C~~C~~~f~ 576 (986)
|..|+.||..|.
T Consensus 26 PivCP~CG~~~~ 37 (108)
T PF09538_consen 26 PIVCPKCGTEFP 37 (108)
T ss_pred CccCCCCCCccC
Confidence 444444444443
No 87
>PHA00626 hypothetical protein
Probab=48.39 E-value=14 Score=27.94 Aligned_cols=15 Identities=27% Similarity=0.374 Sum_probs=11.6
Q ss_pred eecccccCcccccch
Q psy17107 899 RYKCDFCSKEFSCKS 913 (986)
Q Consensus 899 ~~~C~~C~k~f~~~~ 913 (986)
.|.|+.||..|+...
T Consensus 23 rYkCkdCGY~ft~~~ 37 (59)
T PHA00626 23 DYVCCDCGYNDSKDA 37 (59)
T ss_pred ceEcCCCCCeechhh
Confidence 488888888887654
No 88
>KOG2186|consensus
Probab=48.35 E-value=9.7 Score=38.57 Aligned_cols=38 Identities=18% Similarity=0.631 Sum_probs=15.4
Q ss_pred ccccccCcccccccchhcccccccCCcccCCCCCcccCC
Q psy17107 674 YKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSH 712 (986)
Q Consensus 674 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~k~f~~ 712 (986)
|.|++||.+...+ .|..|+-.-+|.-|.|-.||+.|.+
T Consensus 4 FtCnvCgEsvKKp-~vekH~srCrn~~fSCIDC~k~F~~ 41 (276)
T KOG2186|consen 4 FTCNVCGESVKKP-QVEKHMSRCRNAYFSCIDCGKTFER 41 (276)
T ss_pred Eehhhhhhhcccc-chHHHHHhccCCeeEEeeccccccc
Confidence 3444444443333 2223444433444444444444443
No 89
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=47.82 E-value=11 Score=34.08 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=5.9
Q ss_pred eecccccCcccc
Q psy17107 899 RYKCDFCSKEFS 910 (986)
Q Consensus 899 ~~~C~~C~k~f~ 910 (986)
+..|+.||++|.
T Consensus 9 Kr~Cp~cg~kFY 20 (129)
T TIGR02300 9 KRICPNTGSKFY 20 (129)
T ss_pred cccCCCcCcccc
Confidence 344555555543
No 90
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=47.42 E-value=10 Score=36.42 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=6.7
Q ss_pred ccCCCc-cccccc
Q psy17107 922 HQGIKN-KCVLCS 933 (986)
Q Consensus 922 H~~~~~-~C~~C~ 933 (986)
|-|+.| +|++||
T Consensus 144 ~~ge~P~~CPiCg 156 (166)
T COG1592 144 HEGEAPEVCPICG 156 (166)
T ss_pred ccCCCCCcCCCCC
Confidence 344455 666666
No 91
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=47.18 E-value=9.7 Score=25.04 Aligned_cols=25 Identities=40% Similarity=0.844 Sum_probs=12.1
Q ss_pred ccCCCCCeeeccccccccccccccceecccccCcc
Q psy17107 874 KCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSKE 908 (986)
Q Consensus 874 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k~ 908 (986)
+|+.|+..+.. +.|.-|.|+.|+..
T Consensus 4 ~Cp~C~se~~y----------~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTY----------EDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----E----------E-SSSEEETTTTEE
T ss_pred CCCCCCCccee----------ccCCEEeCCccccc
Confidence 58888877776 44455888888753
No 92
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=46.30 E-value=13 Score=26.69 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=15.3
Q ss_pred cccCCCCCeeeccccccccccccccceecccccCc
Q psy17107 873 CKCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSK 907 (986)
Q Consensus 873 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k 907 (986)
|+|..||..|.....+.. +..-.|+.||.
T Consensus 6 y~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~ 34 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSISE------DDPVPCPECGS 34 (42)
T ss_pred EEeCCCCCEEEEEEEcCC------CCCCcCCCCCC
Confidence 566666666655433222 22356666664
No 93
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=46.22 E-value=11 Score=27.92 Aligned_cols=29 Identities=21% Similarity=0.639 Sum_probs=16.2
Q ss_pred cccccCCCCCeeeccccccccccccccceecccccCcc
Q psy17107 871 IRCKCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSKE 908 (986)
Q Consensus 871 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k~ 908 (986)
..|+|..||+.|.. + -.+....|++||.+
T Consensus 5 ~~Y~C~~Cg~~~~~---~------~~~~~irCp~Cg~r 33 (49)
T COG1996 5 MEYKCARCGREVEL---D------QETRGIRCPYCGSR 33 (49)
T ss_pred EEEEhhhcCCeeeh---h------hccCceeCCCCCcE
Confidence 35677777777711 1 11123677777754
No 94
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=46.07 E-value=14 Score=32.81 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=21.5
Q ss_pred ccccccccccChHHHHHHhhhhcCC----ccccCCCCcccc
Q psy17107 928 KCVLCSKEFSRKSHLTRHMKLHQGV----RYKCDLCSKELS 964 (986)
Q Consensus 928 ~C~~C~~~f~~~~~L~~H~~~H~~~----~~~C~~C~~~f~ 964 (986)
+|+.||..-+.-..++ +|. .+| -|.|..||..++
T Consensus 64 ~Cp~Cg~~~a~f~~~Q--~Rs-adE~~T~fy~C~~C~~~w~ 101 (104)
T TIGR01384 64 ECPKCGHKEAYYWLLQ--TRR-ADEPETRFYKCTKCGYVWR 101 (104)
T ss_pred CCCCCCCCeeEEEEec--cCC-CCCCcEEEEEeCCCCCeeE
Confidence 7999986554444332 222 333 399999998775
No 95
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=45.93 E-value=13 Score=24.89 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=5.2
Q ss_pred cccCCCCCeee
Q psy17107 873 CKCDLCSKEFT 883 (986)
Q Consensus 873 ~~C~~C~k~f~ 883 (986)
|.|..||..+.
T Consensus 1 Y~C~~Cg~~~~ 11 (32)
T PF03604_consen 1 YICGECGAEVE 11 (32)
T ss_dssp EBESSSSSSE-
T ss_pred CCCCcCCCeeE
Confidence 34555555544
No 96
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=45.88 E-value=15 Score=28.30 Aligned_cols=10 Identities=20% Similarity=0.823 Sum_probs=4.5
Q ss_pred cccCCCCCcc
Q psy17107 700 RYKCDLCSKE 709 (986)
Q Consensus 700 ~~~C~~C~k~ 709 (986)
.|.|+.||+.
T Consensus 25 ~F~CPnCG~~ 34 (59)
T PRK14890 25 KFLCPNCGEV 34 (59)
T ss_pred EeeCCCCCCe
Confidence 3444444443
No 97
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=45.43 E-value=10 Score=38.44 Aligned_cols=104 Identities=20% Similarity=0.379 Sum_probs=57.3
Q ss_pred ccccccccccccccCcccccCCCCCeeecccccccccccc---ccceecccccCcccccchhhccccccccCCCcccccc
Q psy17107 856 YFILEISKVDRKRVGIRCKCDLCSKEFTHKSSLTEDMKLH---QGIRYKCDFCSKEFSCKSYLTGHIKLHQGIKNKCVLC 932 (986)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~H---~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C 932 (986)
..|.+|.+..-.+-|+-|+|.+|.. |.-...-..|+..- .++.|+|.-|++- .+-+ |--|
T Consensus 126 a~C~EC~R~vw~hGGrif~CsfC~~-flCEDDQFEHQAsCQvLe~E~~KC~SCNrl-Gq~s---------------CLRC 188 (314)
T PF06524_consen 126 AVCIECERGVWDHGGRIFKCSFCDN-FLCEDDQFEHQASCQVLESETFKCQSCNRL-GQYS---------------CLRC 188 (314)
T ss_pred cEeeeeecccccCCCeEEEeecCCC-eeeccchhhhhhhhhhhhcccccccccccc-cchh---------------hhhe
Confidence 3577777776666678899999973 55555666676543 3455888888862 2222 2223
Q ss_pred cccccChHHHHHHhhhhcCCccccCCCCccccchhhHHHHHhhc
Q psy17107 933 SKEFSRKSHLTRHMKLHQGVRYKCDLCSKELSHKSSLTEHMKLH 976 (986)
Q Consensus 933 ~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~H 976 (986)
.-.|-..-..+.=.+.-.+.+++||.||.-......|..=.|+|
T Consensus 189 K~cfCddHvrrKg~ky~k~k~~PCPKCg~et~eTkdLSmStR~h 232 (314)
T PF06524_consen 189 KICFCDDHVRRKGFKYEKGKPIPCPKCGYETQETKDLSMSTRSH 232 (314)
T ss_pred eeeehhhhhhhcccccccCCCCCCCCCCCcccccccceeeeecc
Confidence 33332221111111112234666666666666666555555544
No 98
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=44.13 E-value=17 Score=25.22 Aligned_cols=33 Identities=21% Similarity=0.536 Sum_probs=17.9
Q ss_pred ccCCCCCeeeccccccccccccccceecccccCcccc
Q psy17107 874 KCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSKEFS 910 (986)
Q Consensus 874 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k~f~ 910 (986)
.|+.|+..|.-..+-.. -.|.+.+|+.|+-.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~----~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLP----AGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcc----cCCcEEECCCCCcEee
Confidence 46677776665553211 1233467777766653
No 99
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=43.21 E-value=16 Score=32.74 Aligned_cols=25 Identities=24% Similarity=0.630 Sum_probs=17.2
Q ss_pred ccc----CCCCccccchhhHHHHHhhccC
Q psy17107 954 YKC----DLCSKELSHKSSLTEHMKLHQG 978 (986)
Q Consensus 954 ~~C----~~C~~~f~~~~~l~~H~~~H~~ 978 (986)
|.| ..|++.+++...|+.|++.++|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 667 7777777777777777766654
No 100
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=42.94 E-value=19 Score=26.97 Aligned_cols=20 Identities=50% Similarity=1.027 Sum_probs=11.2
Q ss_pred ccccccccccCh-----HHHHHHhh
Q psy17107 928 KCVLCSKEFSRK-----SHLTRHMK 947 (986)
Q Consensus 928 ~C~~C~~~f~~~-----~~L~~H~~ 947 (986)
.|..|++.++.. +.|..|++
T Consensus 20 ~C~~C~~~l~~~~~~gTs~L~rHl~ 44 (50)
T smart00614 20 KCKYCGKKLSRSSKGGTSNLRRHLR 44 (50)
T ss_pred EecCCCCEeeeCCCCCcHHHHHHHH
Confidence 566666666443 35555555
No 101
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=42.34 E-value=17 Score=36.91 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=13.9
Q ss_pred Ccccccccccccccccccccccccc
Q psy17107 645 IRYKCDLCSKELSHKSSLTEHMKLH 669 (986)
Q Consensus 645 ~~~~C~~C~~~f~~~~~L~~H~~~H 669 (986)
+++.|+.||........|..-.|+|
T Consensus 208 k~~PCPKCg~et~eTkdLSmStR~h 232 (314)
T PF06524_consen 208 KPIPCPKCGYETQETKDLSMSTRSH 232 (314)
T ss_pred CCCCCCCCCCcccccccceeeeecc
Confidence 3556666665555555555554444
No 102
>PF14353 CpXC: CpXC protein
Probab=41.26 E-value=13 Score=34.34 Aligned_cols=49 Identities=20% Similarity=0.395 Sum_probs=32.2
Q ss_pred ccCCCCCeeecccccccccccc--------ccc--eecccccCcccccchhhccccccc
Q psy17107 874 KCDLCSKEFTHKSSLTEDMKLH--------QGI--RYKCDFCSKEFSCKSYLTGHIKLH 922 (986)
Q Consensus 874 ~C~~C~k~f~~~~~L~~H~~~H--------~~~--~~~C~~C~k~f~~~~~L~~H~~~H 922 (986)
.|+.|+..|....-........ .|. .|.||.||..|.-...+.-|-..+
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~~ 61 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPEK 61 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCCC
Confidence 5888998887765444432222 232 288999999888877777665443
No 103
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=40.57 E-value=14 Score=27.76 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=15.4
Q ss_pred CC-ccccCCCCccccchhhHHHHHh
Q psy17107 951 GV-RYKCDLCSKELSHKSSLTEHMK 974 (986)
Q Consensus 951 ~~-~~~C~~C~~~f~~~~~l~~H~~ 974 (986)
|| -+.||-||..|..+-+...|.-
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhh
Confidence 44 4667777777766666666664
No 104
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=40.21 E-value=12 Score=35.61 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=6.2
Q ss_pred ccCCccccccCChh
Q psy17107 728 YKCDLCSKELSHKS 741 (986)
Q Consensus 728 ~~C~~C~~~f~~~~ 741 (986)
+.|+-||++|....
T Consensus 29 ~~c~~c~~~f~~~e 42 (154)
T PRK00464 29 RECLACGKRFTTFE 42 (154)
T ss_pred eeccccCCcceEeE
Confidence 34444444444433
No 105
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=39.87 E-value=22 Score=22.49 Aligned_cols=19 Identities=21% Similarity=0.747 Sum_probs=14.5
Q ss_pred ccCCCCccccchhhHHHHHh
Q psy17107 955 KCDLCSKELSHKSSLTEHMK 974 (986)
Q Consensus 955 ~C~~C~~~f~~~~~l~~H~~ 974 (986)
.||+|++.+ ....+..|+.
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 588888888 6677777775
No 106
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=39.10 E-value=17 Score=35.13 Aligned_cols=28 Identities=11% Similarity=0.450 Sum_probs=15.1
Q ss_pred ccCCccccccCChhhHHHHhhhhcCCCCCCCCCccc
Q psy17107 728 YKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKE 763 (986)
Q Consensus 728 ~~C~~C~~~f~~~~~l~~H~~~H~~~~~~C~~C~~~ 763 (986)
|.|+.|+..|....++.. .|.|+.||..
T Consensus 110 Y~Cp~c~~r~tf~eA~~~--------~F~Cp~Cg~~ 137 (158)
T TIGR00373 110 FICPNMCVRFTFNEAMEL--------NFTCPRCGAM 137 (158)
T ss_pred EECCCCCcEeeHHHHHHc--------CCcCCCCCCE
Confidence 555555555555555531 3555555554
No 107
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=38.87 E-value=13 Score=40.50 Aligned_cols=63 Identities=17% Similarity=0.402 Sum_probs=30.6
Q ss_pred cccccCCCCCeeeccccc---ccc-ccccccce--ecccccCcccccchhhccccccccCCCcccccccccccChHHH
Q psy17107 871 IRCKCDLCSKEFTHKSSL---TED-MKLHQGIR--YKCDFCSKEFSCKSYLTGHIKLHQGIKNKCVLCSKEFSRKSHL 942 (986)
Q Consensus 871 ~~~~C~~C~k~f~~~~~L---~~H-~~~H~~~~--~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~L 942 (986)
+.+.|.+|.+++-.++.. ..| +..|.+.+ |+|.-|+++..+...|=.+ .|..||.+=..+..+
T Consensus 251 kav~C~~C~yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~~C~~Rt~sl~r~P~~---------~C~~Cg~~~wer~~M 319 (344)
T PF09332_consen 251 KAVTCKQCKYTAFKPSDRCKEEGHPLKWHDAVKRFFKCKDCGNRTISLERLPKK---------HCSNCGSSKWERTGM 319 (344)
T ss_dssp EEEEETTT--EESS--HHHHHTT--EEEEEEE-EEEE-T-TS-EEEESSSS--S-----------TTT-S---EEE--
T ss_pred EEEEcCCCCCcccCcchhHHhcCCceEEeeeeeeeEECCCCCCeeeecccCCCC---------CCCcCCcCceeehhh
Confidence 678899999888777764 456 44566655 9999999997655333111 699999765444444
No 108
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=38.71 E-value=16 Score=29.71 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=25.6
Q ss_pred cccCCCCCeeeccccccccccccccce-eccc--ccCcccccchhhc
Q psy17107 873 CKCDLCSKEFTHKSSLTEDMKLHQGIR-YKCD--FCSKEFSCKSYLT 916 (986)
Q Consensus 873 ~~C~~C~k~f~~~~~L~~H~~~H~~~~-~~C~--~C~k~f~~~~~L~ 916 (986)
+.|+.||....-..+-...-. .-+. ++|. .||.+|.+...+.
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~--~~~~Y~qC~N~eCg~tF~t~es~s 46 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDT--TKERYHQCQNVNCSATFITYESVQ 46 (72)
T ss_pred ccCCCCCCccEEEEChhcChh--hheeeeecCCCCCCCEEEEEEEEE
Confidence 368888876644443332211 2233 8898 8999998766554
No 109
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=38.39 E-value=14 Score=27.70 Aligned_cols=22 Identities=14% Similarity=0.481 Sum_probs=12.2
Q ss_pred ccCCCCCcccCCcchhHHHhhh
Q psy17107 701 YKCDLCSKELSHKSSLTEHMKL 722 (986)
Q Consensus 701 ~~C~~C~k~f~~~~~L~~H~~~ 722 (986)
+.|+-||..|....+..+|...
T Consensus 18 lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 18 LRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred eeCCchhHHHHHhHHHHHHhhH
Confidence 4555555555555555555543
No 110
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=38.23 E-value=15 Score=35.01 Aligned_cols=35 Identities=23% Similarity=0.500 Sum_probs=24.2
Q ss_pred cccccCCCCCeeeccccccc-cccccccceecccccCccc
Q psy17107 871 IRCKCDLCSKEFTHKSSLTE-DMKLHQGIRYKCDFCSKEF 909 (986)
Q Consensus 871 ~~~~C~~C~k~f~~~~~L~~-H~~~H~~~~~~C~~C~k~f 909 (986)
..|.|+.|+..|.....+.. . ....|.||.||...
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~~~d----~~~~f~Cp~Cg~~l 133 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQLLD----MDGTFTCPRCGEEL 133 (147)
T ss_pred cEEECcCCCCEeeHHHHHHhcC----CCCcEECCCCCCEE
Confidence 56889999998886554432 2 12339999999765
No 111
>PF14353 CpXC: CpXC protein
Probab=37.89 E-value=31 Score=31.89 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=9.8
Q ss_pred cccccccccccccccccccc
Q psy17107 646 RYKCDLCSKELSHKSSLTEH 665 (986)
Q Consensus 646 ~~~C~~C~~~f~~~~~L~~H 665 (986)
.|.|+.||..|.-...+..|
T Consensus 38 ~~~CP~Cg~~~~~~~p~lY~ 57 (128)
T PF14353_consen 38 SFTCPSCGHKFRLEYPLLYH 57 (128)
T ss_pred EEECCCCCCceecCCCEEEE
Confidence 44555555555444444444
No 112
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=37.16 E-value=14 Score=35.13 Aligned_cols=12 Identities=33% Similarity=0.921 Sum_probs=5.5
Q ss_pred ccCCccccccCC
Q psy17107 728 YKCDLCSKELSH 739 (986)
Q Consensus 728 ~~C~~C~~~f~~ 739 (986)
|.|+.|+..|..
T Consensus 100 Y~Cp~C~~~y~~ 111 (147)
T smart00531 100 YKCPNCQSKYTF 111 (147)
T ss_pred EECcCCCCEeeH
Confidence 444444444443
No 113
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=36.57 E-value=21 Score=25.88 Aligned_cols=20 Identities=35% Similarity=0.723 Sum_probs=8.9
Q ss_pred cccCCCCccccch----hhHHHHH
Q psy17107 954 YKCDLCSKELSHK----SSLTEHM 973 (986)
Q Consensus 954 ~~C~~C~~~f~~~----~~l~~H~ 973 (986)
.+|.+|++.+... +.|..|+
T Consensus 17 a~C~~C~~~~~~~~~~ts~l~~HL 40 (45)
T PF02892_consen 17 AKCKYCGKVIKYSSGGTSNLKRHL 40 (45)
T ss_dssp EEETTTTEE-----SSTHHHHHHH
T ss_pred EEeCCCCeEEeeCCCcHHHHHHhh
Confidence 4555555555543 4555555
No 114
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=34.04 E-value=21 Score=35.12 Aligned_cols=16 Identities=13% Similarity=0.567 Sum_probs=7.6
Q ss_pred ccCCccccccCChhhH
Q psy17107 728 YKCDLCSKELSHKSSL 743 (986)
Q Consensus 728 ~~C~~C~~~f~~~~~l 743 (986)
|.|+.|+..|....++
T Consensus 118 Y~Cp~C~~rytf~eA~ 133 (178)
T PRK06266 118 FFCPNCHIRFTFDEAM 133 (178)
T ss_pred EECCCCCcEEeHHHHh
Confidence 4455555444444443
No 115
>KOG4173|consensus
Probab=33.91 E-value=13 Score=36.25 Aligned_cols=76 Identities=18% Similarity=0.527 Sum_probs=45.8
Q ss_pred ccccCc--CCccccCcchhhhHhhccCCcccccCcccccccCchhHHHHhhhcc----------CC-cccc--ccCCCcc
Q psy17107 484 RYKCDL--CSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQ----------GI-RYKC--DLCSKEL 548 (986)
Q Consensus 484 ~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H~~~h~----------~~-~~~C--~~C~~~f 548 (986)
.|.|++ |...|........|..+-++ -.|.+|.+.|.+...|..|+..-+ |. -|+| +.|+..|
T Consensus 79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~--~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF 156 (253)
T KOG4173|consen 79 AFACQVAGCCQVFDALDDYEHHYHTLHG--NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF 156 (253)
T ss_pred cccccccchHHHHhhhhhHHHhhhhccc--chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence 355654 55666666666666544333 247777777777777777764322 22 3666 4477777
Q ss_pred cChhhHHHHhhhc
Q psy17107 549 SHKSSLTEHMKLH 561 (986)
Q Consensus 549 ~~~~~L~~H~~~h 561 (986)
.+......|+-.-
T Consensus 157 kT~r~RkdH~I~~ 169 (253)
T KOG4173|consen 157 KTSRDRKDHMIRM 169 (253)
T ss_pred hhhhhhhhHHHHh
Confidence 7777777776543
No 116
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=33.07 E-value=46 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.537 Sum_probs=17.8
Q ss_pred cccCCCCCeeecccccccccccccc-------ceecccccCcc
Q psy17107 873 CKCDLCSKEFTHKSSLTEDMKLHQG-------IRYKCDFCSKE 908 (986)
Q Consensus 873 ~~C~~C~k~f~~~~~L~~H~~~H~~-------~~~~C~~C~k~ 908 (986)
|+|..||..|--...-... .+-.| +.+.|++|+..
T Consensus 2 y~C~~CgyvYd~~~Gd~~~-~i~pGt~F~~Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 2 YQCPVCGYVYDPEKGDPEN-GIPPGTPFEDLPDDWVCPVCGAP 43 (47)
T ss_dssp EEETTTSBEEETTTBBGGG-TB-TT--GGGS-TT-B-TTTSSB
T ss_pred cCCCCCCEEEcCCcCCccc-CcCCCCCHHHCCCCCcCcCCCCc
Confidence 5677788777665543332 22222 12778877754
No 117
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=33.05 E-value=25 Score=33.89 Aligned_cols=9 Identities=22% Similarity=0.914 Sum_probs=4.6
Q ss_pred ccccccccc
Q psy17107 647 YKCDLCSKE 655 (986)
Q Consensus 647 ~~C~~C~~~ 655 (986)
|.|++||..
T Consensus 135 ~vC~vCGy~ 143 (166)
T COG1592 135 WVCPVCGYT 143 (166)
T ss_pred EEcCCCCCc
Confidence 555555543
No 118
>PF15269 zf-C2H2_7: Zinc-finger
Probab=32.16 E-value=16 Score=25.97 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=12.2
Q ss_pred ecccccCcccccchhhccccc
Q psy17107 900 YKCDFCSKEFSCKSYLTGHIK 920 (986)
Q Consensus 900 ~~C~~C~k~f~~~~~L~~H~~ 920 (986)
|+|-.|.....-++.|-+||+
T Consensus 21 ykcfqcpftc~~kshl~nhmk 41 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMK 41 (54)
T ss_pred ceeecCCcccchHHHHHHHHH
Confidence 555555555555566655554
No 119
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=31.62 E-value=45 Score=25.47 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=19.1
Q ss_pred cccCCCCCeeeccccccccccccccceecccccCcccc
Q psy17107 873 CKCDLCSKEFTHKSSLTEDMKLHQGIRYKCDFCSKEFS 910 (986)
Q Consensus 873 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~C~~C~k~f~ 910 (986)
+.|+.||..+.-.... .|+-..|+.||..+.
T Consensus 3 ~~CP~CG~~iev~~~~-------~GeiV~Cp~CGaele 33 (54)
T TIGR01206 3 FECPDCGAEIELENPE-------LGELVICDECGAELE 33 (54)
T ss_pred cCCCCCCCEEecCCCc-------cCCEEeCCCCCCEEE
Confidence 4688888766443322 244577888887654
No 120
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=31.61 E-value=34 Score=31.00 Aligned_cols=11 Identities=0% Similarity=-0.016 Sum_probs=5.0
Q ss_pred cccCCCCCCcC
Q psy17107 565 RYKCDLCSKEL 575 (986)
Q Consensus 565 ~~~C~~C~~~f 575 (986)
|..|+.||..|
T Consensus 26 p~vcP~cg~~~ 36 (129)
T TIGR02300 26 PAVSPYTGEQF 36 (129)
T ss_pred CccCCCcCCcc
Confidence 34444444444
No 121
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=29.57 E-value=25 Score=32.49 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=9.6
Q ss_pred cccCCCCccccchhhHHHHHhhccCCC
Q psy17107 954 YKCDLCSKELSHKSSLTEHMKLHQGRT 980 (986)
Q Consensus 954 ~~C~~C~~~f~~~~~l~~H~~~H~~~~ 980 (986)
..|-+||+.|.. |..|++.|+|..
T Consensus 73 i~clecGk~~k~---LkrHL~~~~glt 96 (132)
T PF05443_consen 73 IICLECGKKFKT---LKRHLRTHHGLT 96 (132)
T ss_dssp EE-TBT--EESB---HHHHHHHTT-S-
T ss_pred eEEccCCcccch---HHHHHHHccCCC
Confidence 445555555543 355555555543
No 122
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=29.17 E-value=32 Score=33.15 Aligned_cols=29 Identities=14% Similarity=0.450 Sum_probs=14.8
Q ss_pred ceecCCCCcccCChhHHHHHhhhcCCccccCCCCCCc
Q psy17107 160 RYKCDLCSKEFSCKSYLTEHMKLHQGVRYKCDLCSKD 196 (986)
Q Consensus 160 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~ 196 (986)
-|.|+.|+..|+...++. ..|.|+.||..
T Consensus 109 ~Y~Cp~c~~r~tf~eA~~--------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 109 FFICPNMCVRFTFNEAME--------LNFTCPRCGAM 137 (158)
T ss_pred eEECCCCCcEeeHHHHHH--------cCCcCCCCCCE
Confidence 355555555555555443 13555555543
No 123
>KOG4173|consensus
Probab=28.51 E-value=15 Score=35.88 Aligned_cols=69 Identities=23% Similarity=0.579 Sum_probs=38.1
Q ss_pred CCcccCCchhhhhHhhhccCcceecCCCCcccCChhHHHHHhhhcC----------Cc-cccC--CCCCCccCCchhHHh
Q psy17107 139 CSKDFSCKKHLTRHMKLHQGVRYKCDLCSKEFSCKSYLTEHMKLHQ----------GV-RYKC--DLCSKDFSCKKHLTR 205 (986)
Q Consensus 139 C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~----------~~-~~~C--~~C~~~f~~~~~L~~ 205 (986)
|...|.+..++..|...-++ -.|..|.+.|.+...|..|+..-+ |. -|+| +.|+..|.+...-..
T Consensus 87 c~~~~d~lD~~E~hY~~~h~--~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~Rkd 164 (253)
T KOG4173|consen 87 CCQVFDALDDYEHHYHTLHG--NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKD 164 (253)
T ss_pred hHHHHhhhhhHHHhhhhccc--chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhh
Confidence 44555555555555433222 246666666666666666653221 11 3566 456666766666666
Q ss_pred Hhhh
Q psy17107 206 HMKL 209 (986)
Q Consensus 206 H~~~ 209 (986)
||..
T Consensus 165 H~I~ 168 (253)
T KOG4173|consen 165 HMIR 168 (253)
T ss_pred HHHH
Confidence 6644
No 124
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.16 E-value=53 Score=40.60 Aligned_cols=50 Identities=30% Similarity=0.739 Sum_probs=35.1
Q ss_pred cccccccccccccccccccccccccCCcccccccCcccccccchhcccccccCCcccCCCCCcccCCcchhHHHhhhhCC
Q psy17107 646 RYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQG 725 (986)
Q Consensus 646 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~C~~C~k~f~~~~~L~~H~~~h~~ 725 (986)
...|+.||... ..+.|+.||.. +...+.|+.|+...
T Consensus 626 ~RfCpsCG~~t---------------~~frCP~CG~~--------------Te~i~fCP~CG~~~--------------- 661 (1121)
T PRK04023 626 RRKCPSCGKET---------------FYRRCPFCGTH--------------TEPVYRCPRCGIEV--------------- 661 (1121)
T ss_pred CccCCCCCCcC---------------CcccCCCCCCC--------------CCcceeCccccCcC---------------
Confidence 57899998762 34789999876 45568899995432
Q ss_pred CCccCCccccccCC
Q psy17107 726 IRYKCDLCSKELSH 739 (986)
Q Consensus 726 ~~~~C~~C~~~f~~ 739 (986)
.+|.|+.||..-..
T Consensus 662 ~~y~CPKCG~El~~ 675 (1121)
T PRK04023 662 EEDECEKCGREPTP 675 (1121)
T ss_pred CCCcCCCCCCCCCc
Confidence 25779999875543
No 125
>PF15269 zf-C2H2_7: Zinc-finger
Probab=27.63 E-value=35 Score=24.34 Aligned_cols=22 Identities=45% Similarity=0.698 Sum_probs=17.9
Q ss_pred CCCCCCcccccCchhHHHHHHh
Q psy17107 755 YKCDLCSKELSHKSSLTEHMKL 776 (986)
Q Consensus 755 ~~C~~C~~~f~~~~~l~~H~~~ 776 (986)
|+|-.|.....-++.|-+||+.
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 6788888888888888888865
No 126
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=26.77 E-value=30 Score=28.18 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=5.8
Q ss_pred cccc--ccCcccccc
Q psy17107 674 YKCD--LCSKELSHK 686 (986)
Q Consensus 674 ~~C~--~C~k~f~~~ 686 (986)
++|. .||.+|...
T Consensus 28 ~qC~N~eCg~tF~t~ 42 (72)
T PRK09678 28 HQCQNVNCSATFITY 42 (72)
T ss_pred eecCCCCCCCEEEEE
Confidence 4444 444444433
No 127
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=26.19 E-value=40 Score=30.87 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=9.1
Q ss_pred CccCCccccccCChh
Q psy17107 727 RYKCDLCSKELSHKS 741 (986)
Q Consensus 727 ~~~C~~C~~~f~~~~ 741 (986)
|++|..||+.|...+
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 456666666666554
No 128
>KOG0782|consensus
Probab=26.06 E-value=13 Score=41.81 Aligned_cols=51 Identities=25% Similarity=0.457 Sum_probs=35.9
Q ss_pred cchhhccccccccCCCc-ccccccccccChHHHHHHhhhhcCC--ccccCCCCccccchh
Q psy17107 911 CKSYLTGHIKLHQGIKN-KCVLCSKEFSRKSHLTRHMKLHQGV--RYKCDLCSKELSHKS 967 (986)
Q Consensus 911 ~~~~L~~H~~~H~~~~~-~C~~C~~~f~~~~~L~~H~~~H~~~--~~~C~~C~~~f~~~~ 967 (986)
..+.|.+|-++|....- +|..|||+|-++..+ |..| ...|..|..+|-.+.
T Consensus 237 rE~~fvrHHWVHrrRqeGkC~~CgKgFQQKf~F------hsKEivAisCSWCKqayH~Kv 290 (1004)
T KOG0782|consen 237 RESGFVRHHWVHRRRQEGKCNTCGKGFQQKFFF------HSKEIVAISCSWCKQAYHLKV 290 (1004)
T ss_pred ccccchHHhHhhHhhhccccchhhhhhhhheee------ccccEEEEEehHHHHHhhcch
Confidence 34467777777754433 888888888877655 5666 478888888877665
No 129
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=25.77 E-value=35 Score=33.68 Aligned_cols=29 Identities=17% Similarity=0.574 Sum_probs=14.6
Q ss_pred ceecCCCCcccCChhHHHHHhhhcCCccccCCCCCCc
Q psy17107 160 RYKCDLCSKEFSCKSYLTEHMKLHQGVRYKCDLCSKD 196 (986)
Q Consensus 160 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~ 196 (986)
-|.|+.|+..|+...++. ..|.|+.||..
T Consensus 117 ~Y~Cp~C~~rytf~eA~~--------~~F~Cp~Cg~~ 145 (178)
T PRK06266 117 FFFCPNCHIRFTFDEAME--------YGFRCPQCGEM 145 (178)
T ss_pred EEECCCCCcEEeHHHHhh--------cCCcCCCCCCC
Confidence 355555555555544432 13555555543
No 130
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=23.95 E-value=52 Score=20.45 Aligned_cols=9 Identities=22% Similarity=0.759 Sum_probs=4.6
Q ss_pred cccccCCCC
Q psy17107 871 IRCKCDLCS 879 (986)
Q Consensus 871 ~~~~C~~C~ 879 (986)
.+|.|+.||
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 345555555
No 131
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=23.87 E-value=36 Score=25.90 Aligned_cols=10 Identities=50% Similarity=1.305 Sum_probs=5.1
Q ss_pred ccCCCCCeee
Q psy17107 874 KCDLCSKEFT 883 (986)
Q Consensus 874 ~C~~C~k~f~ 883 (986)
+|+.||+.|+
T Consensus 7 ~C~~Cg~~~~ 16 (54)
T PF14446_consen 7 KCPVCGKKFK 16 (54)
T ss_pred cChhhCCccc
Confidence 4555555544
No 132
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=23.49 E-value=68 Score=24.09 Aligned_cols=35 Identities=14% Similarity=0.519 Sum_probs=18.3
Q ss_pred cccCCCCCeeecccccccccccccc-------ceecccccCcc
Q psy17107 873 CKCDLCSKEFTHKSSLTEDMKLHQG-------IRYKCDFCSKE 908 (986)
Q Consensus 873 ~~C~~C~k~f~~~~~L~~H~~~H~~-------~~~~C~~C~k~ 908 (986)
|+|..||..|.-...-... .+-.| ..+.|++|+..
T Consensus 2 y~C~~CgyiYd~~~Gd~~~-~i~pGt~f~~Lp~~w~CP~C~a~ 43 (50)
T cd00730 2 YECRICGYIYDPAEGDPDE-GIPPGTPFEDLPDDWVCPVCGAG 43 (50)
T ss_pred cCCCCCCeEECCCCCCccc-CcCCCCCHhHCCCCCCCCCCCCc
Confidence 5677888777644222111 22222 12678888753
No 133
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.29 E-value=70 Score=39.61 Aligned_cols=52 Identities=31% Similarity=0.712 Sum_probs=34.1
Q ss_pred cccccccCccCCCchhHHHHHhhhCCCcccCCCCCcccccchhHHHHhhhccCCcccccccccccccccccccccccccC
Q psy17107 592 RYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQG 671 (986)
Q Consensus 592 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~C~~C~~~f~~~~~L~~H~~~H~~ 671 (986)
...|+.||... ..+.|+.||.. +...|.|+.|+...
T Consensus 626 ~RfCpsCG~~t---------------~~frCP~CG~~--------------Te~i~fCP~CG~~~--------------- 661 (1121)
T PRK04023 626 RRKCPSCGKET---------------FYRRCPFCGTH--------------TEPVYRCPRCGIEV--------------- 661 (1121)
T ss_pred CccCCCCCCcC---------------CcccCCCCCCC--------------CCcceeCccccCcC---------------
Confidence 46788888762 34788888865 44467888885322
Q ss_pred CcccccccCccccccc
Q psy17107 672 IRYKCDLCSKELSHKS 687 (986)
Q Consensus 672 ~~~~C~~C~k~f~~~~ 687 (986)
.++.|+.||..-...+
T Consensus 662 ~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 662 EEDECEKCGREPTPYS 677 (1121)
T ss_pred CCCcCCCCCCCCCccc
Confidence 2466888887654443
No 134
>PF12907 zf-met2: Zinc-binding
Probab=23.14 E-value=23 Score=25.05 Aligned_cols=31 Identities=26% Similarity=0.593 Sum_probs=18.8
Q ss_pred cccCCCCccccchh---hHHHHHhh-ccCCCCcCC
Q psy17107 954 YKCDLCSKELSHKS---SLTEHMKL-HQGRTYETT 984 (986)
Q Consensus 954 ~~C~~C~~~f~~~~---~l~~H~~~-H~~~~~~~~ 984 (986)
+.|.+|-.+|.... .|..|.-. |....+..|
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~~~~~C 36 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHPKNTFEEC 36 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCCCCCHHHc
Confidence 56777776665554 47777764 444434444
No 135
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=21.55 E-value=52 Score=30.01 Aligned_cols=25 Identities=32% Similarity=0.374 Sum_probs=17.0
Q ss_pred cccCCCCccccchhhHHHHHhhccCCCC
Q psy17107 954 YKCDLCSKELSHKSSLTEHMKLHQGRTY 981 (986)
Q Consensus 954 ~~C~~C~~~f~~~~~l~~H~~~H~~~~~ 981 (986)
..|-++|+.|. +|.+|+.+|.|.-|
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcchH---HHHHHHhcccCCCH
Confidence 46777777775 46677777776654
No 136
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=21.15 E-value=47 Score=25.71 Aligned_cols=39 Identities=15% Similarity=0.462 Sum_probs=19.5
Q ss_pred cccCC-CCCeeeccccccccccc-cccceecccc----cCccccc
Q psy17107 873 CKCDL-CSKEFTHKSSLTEDMKL-HQGIRYKCDF----CSKEFSC 911 (986)
Q Consensus 873 ~~C~~-C~k~f~~~~~L~~H~~~-H~~~~~~C~~----C~k~f~~ 911 (986)
..|+. |+..-..+..|..|+.. =......|++ |+..+..
T Consensus 10 v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~ 54 (60)
T PF02176_consen 10 VPCPNGCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPR 54 (60)
T ss_dssp EE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEH
T ss_pred eeCCCCCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccch
Confidence 35766 44443335678888763 3333477888 8777663
No 137
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=20.57 E-value=65 Score=24.31 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=12.5
Q ss_pred eecccccCcccccchhhccccccc
Q psy17107 899 RYKCDFCSKEFSCKSYLTGHIKLH 922 (986)
Q Consensus 899 ~~~C~~C~k~f~~~~~L~~H~~~H 922 (986)
+|+|+.|+..|=-.=++-.|...|
T Consensus 21 ~y~C~~C~~~FC~dCD~fiHE~LH 44 (51)
T PF07975_consen 21 RYRCPKCKNHFCIDCDVFIHETLH 44 (51)
T ss_dssp EE--TTTT--B-HHHHHTTTTTS-
T ss_pred eEECCCCCCccccCcChhhhcccc
Confidence 477777777777777777776666
No 138
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=20.13 E-value=63 Score=22.76 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=7.0
Q ss_pred ecccccCccc
Q psy17107 900 YKCDFCSKEF 909 (986)
Q Consensus 900 ~~C~~C~k~f 909 (986)
|.|..||..|
T Consensus 29 y~C~~C~~~w 38 (39)
T PF01096_consen 29 YVCCNCGHRW 38 (39)
T ss_dssp EEESSSTEEE
T ss_pred EEeCCCCCee
Confidence 7777777655
No 139
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=20.01 E-value=27 Score=35.39 Aligned_cols=31 Identities=19% Similarity=0.461 Sum_probs=19.8
Q ss_pred cccceecccccCcccccchhhccccccccCC
Q psy17107 895 HQGIRYKCDFCSKEFSCKSYLTGHIKLHQGI 925 (986)
Q Consensus 895 H~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~ 925 (986)
....+|.|++|+|.|.-...++.|+..-+.+
T Consensus 73 ~~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 73 EDEDKWRCPLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp SSSEEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred HcCCEECCCCCCcccCChHHHHHHHhhcCHH
Confidence 3444588888888888888888887765444
Done!