RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17107
(986 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 33.5 bits (76), Expect = 0.64
Identities = 75/424 (17%), Positives = 123/424 (29%), Gaps = 37/424 (8%)
Query: 269 NKCVLCSKEFSRKSHLTRHMKLHQG-VRYKC--DLCSKELSHKSSLTEHMKLH--QGIRY 323
+ C C+ FSR HLTRH++ H G +C C K S L+ H++ H
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDL 93
Query: 324 KCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCS 383
S SS + L S L S + L + +
Sbjct: 94 NSKSLPLSNSKASSSSLSSSSSNSN-DNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLP 152
Query: 384 KELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHK 443
S + + LH + + ++ ++ + S S
Sbjct: 153 GNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIP 212
Query: 444 SSLTEHMKLHQGIRYKCDLCSKELSHKSSLTE--------HMKLHQGIRYKCDLCSKELS 495
SS ++ + S+ LS KS L++ + L +
Sbjct: 213 SSSSDQNLENSSSSLPLTTNSQ-LSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQ 271
Query: 496 HKSSLTEHMKLHQGI--RYKCDLCSKELSHKSSLTEHMKL-----HQGIRYKCD--LCSK 546
S +G K C+ S S LT H++ + C LC K
Sbjct: 272 SSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGK 331
Query: 547 ELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKS 606
S +L H+ LH I K L + + +
Sbjct: 332 LFSRNDALKRHILLHTSIS----------PAKEKLLNSSSKFSPLLNNEPP---QSLQQY 378
Query: 607 SLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHM 666
++ K + + C K S+ S + K CSK + +L H
Sbjct: 379 KDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHK 438
Query: 667 KLHQ 670
K+H
Sbjct: 439 KIHT 442
Score = 31.6 bits (71), Expect = 2.1
Identities = 71/426 (16%), Positives = 115/426 (26%), Gaps = 41/426 (9%)
Query: 134 YKCDLCSKDFSCKKHLTRHMKLHQG-VRYKCDLCSKEFSCKSYL---TEHMKLHQGVRYK 189
C C+ FS +HLTRH++ H G +C + S L H
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPS-- 91
Query: 190 CDLCSKDFSCKKHLTRHMKL---HQGVRYKCDLCSKDFSCKKHLTRHMKLHQGVRYKCDL 246
DL SK L L S + L + +
Sbjct: 92 -DLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNP 150
Query: 247 CSKEFSCKSYLTGHIKLHQGIKNKCVLCSKEFSRKSHLTRHMKLHQGVRYKCDLCSKELS 306
S LH + + + ++ ++ + S S
Sbjct: 151 LPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYS 210
Query: 307 HKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTE--------HMKLHQGIRYKCDLCSKE 358
SS ++ + S+ LS KS L++ + L +
Sbjct: 211 IPSSSSDQNLENSSSSLPLTTNSQ-LSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTAS 269
Query: 359 LSHKSSLTEHMKLHQGI--RYKCDLCSKELSHKSSLTEHMKL-----HQGIRYKCD--LC 409
S +G K C+ S S LT H++ + C LC
Sbjct: 270 SQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLC 329
Query: 410 SKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSH 469
K S +L H+ LH I K L + +
Sbjct: 330 GKLFSRNDALKRHILLHTSIS----------PAKEKLLNSSSKFSPLLNNEPP---QSLQ 376
Query: 470 KSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLTE 529
+ ++ K + + C K S+ S + K CSK + +L
Sbjct: 377 QYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIP 436
Query: 530 HMKLHQ 535
H K+H
Sbjct: 437 HKKIHT 442
Score = 29.7 bits (66), Expect = 8.6
Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 35/191 (18%)
Query: 130 QGIRYKCDLCSKDFSCKKHLTRHMKLHQGVRYKCDLCSKEFSCKSYLTEHMKLHQGVRYK 189
+ K C+ FS LTRH++ K FSC
Sbjct: 286 FSLPIKSKQCNISFSRSSPLTRHLRSVNHSGES----LKPFSCPY--------------- 326
Query: 190 CDLCSKDFSCKKHLTRHMKLHQGVRYKCDLCSKDFSCKKHLTRHMKLHQGVRYKCDLCSK 249
LC K FS L RH+ LH + K+ L +
Sbjct: 327 -SLCGKLFSRNDALKRHILLHTSISPA----------KEKLLNSSSKFSP---LLNNEPP 372
Query: 250 EFSCKSYLTGHIKLHQGIKNKCVL-CSKEFSRKSHLTRHMKLHQGVRYKCDLCSKELSHK 308
+ + + K + + N C+ ++ + H+ H+ + K CSK +
Sbjct: 373 QSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSF-RPYNCKNPPCSKSFNRH 431
Query: 309 SSLTEHMKLHQ 319
+L H K+H
Sbjct: 432 YNLIPHKKIHT 442
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 27.3 bits (61), Expect = 2.4
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 270 KCVLCSKEFSRKSHLTRHMKLH 291
KC C K FSRKS+L RH++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.3 bits (61), Expect = 2.4
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 928 KCVLCSKEFSRKSHLTRHMKLH 949
KC C K FSRKS+L RH++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|119416 cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI3K)-like family,
catalytic domain; The PI3K-like catalytic domain family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. Members of the family include PI3K,
phosphoinositide 4-kinase (PI4K), PI3K-related protein
kinases (PIKKs), and TRansformation/tRanscription
domain-Associated Protein (TRRAP). PI3Ks catalyze the
transfer of the gamma-phosphoryl group from ATP to the
3-hydroxyl of the inositol ring of
D-myo-phosphatidylinositol (PtdIns) or its derivatives,
while PI4K catalyze the phosphorylation of the
4-hydroxyl of PtdIns. PIKKs are protein kinases that
catalyze the phosphorylation of serine/threonine
residues, especially those that are followed by a
glutamine. PI3Ks play an important role in a variety of
fundamental cellular processes, including cell motility,
the Ras pathway, vesicle trafficking and secretion,
immune cell activation and apoptosis. PI4Ks produce
PtdIns(4)P, the major precursor to important signaling
phosphoinositides. PIKKs have diverse functions
including cell-cycle checkpoints, genome surveillance,
mRNA surveillance, and translation control.
Length = 219
Score = 30.3 bits (69), Expect = 3.7
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 22/104 (21%)
Query: 764 LSHKSSLTEHMKLHQGIRYKCDLCSKELSHKSSLKLESQLRQKRLVRSTV---------- 813
LS +S L E + + D SK L KS + E Q ++ + S
Sbjct: 75 LSPRSGLIEVVPGSVTLE---DDLSKWLKRKSPDEDEWQEARENFISSLAGYSVAGYILG 131
Query: 814 ----HRDIVKVTIELHPNEHHLIGIKFGPS-GNRTRDLALTLIP 852
H D + + + L I FG G R + L +P
Sbjct: 132 IGDRHPDNIMI----DLDTGKLFHIDFGFIFGKRKKFLGRERVP 171
>gnl|CDD|236067 PRK07598, PRK07598, RNA polymerase sigma factor SigC; Validated.
Length = 415
Score = 30.6 bits (69), Expect = 4.9
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 797 LKLESQLRQKRLVRSTVHRDIVKVTIELHPNEHHLIGIKFGPSGNRTRDLALTLIPGNPY 856
L+ + ++ L+R ++ RD+ + +L E +I ++FG L G+ Y
Sbjct: 324 LETDDISPEEMLMRESLQRDLQHLLADLTSRERDVIRMRFG------------LADGHTY 371
Query: 857 FILEISKV---DRKRV 869
+ EI + R+RV
Sbjct: 372 SLAEIGRALDLSRERV 387
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 26.3 bits (58), Expect = 6.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 161 YKCDLCSKEFSCKSYLTEHMKLH 183
Y+C C K F KS L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 296 YKCDLCSKELSHKSSLTEHMKLH 318
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 323 YKCDLCSKELSHKSSLTEHMKLH 345
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 350 YKCDLCSKELSHKSSLTEHMKLH 372
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 377 YKCDLCSKELSHKSSLTEHMKLH 399
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 404 YKCDLCSKELSHKSSLTEHMKLH 426
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 431 YKCDLCSKELSHKSSLTEHMKLH 453
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 458 YKCDLCSKELSHKSSLTEHMKLH 480
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 485 YKCDLCSKELSHKSSLTEHMKLH 507
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 512 YKCDLCSKELSHKSSLTEHMKLH 534
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 539 YKCDLCSKELSHKSSLTEHMKLH 561
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 566 YKCDLCSKELSHKSSLTEHMKLH 588
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 593 YKCDLCSKELSHKSSLTEHMKLH 615
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 620 YKCDLCSKELSHKSSLTEHMKLH 642
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 647 YKCDLCSKELSHKSSLTEHMKLH 669
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 674 YKCDLCSKELSHKSSLTEHMKLH 696
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 701 YKCDLCSKELSHKSSLTEHMKLH 723
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 728 YKCDLCSKELSHKSSLTEHMKLH 750
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 755 YKCDLCSKELSHKSSLTEHMKLH 777
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 954 YKCDLCSKELSHKSSLTEHMKLH 976
Y+C C K KS+L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|217637 pfam03607, DCX, Doublecortin.
Length = 60
Score = 27.1 bits (61), Expect = 6.9
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 942 LTRHMKLHQGVRYKCDLCSKELSHKSSLTEHMKLHQGRTY 981
LT +KL GVR L + + +SL E L G +Y
Sbjct: 18 LTEKVKLPSGVRK---LYTLDGHRVTSLDE---LEDGGSY 51
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 25.8 bits (57), Expect = 9.1
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 148 HLTRHMKLHQGVR-YKCDLCSKEFSC 172
+L RHM+ H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 25.8 bits (57), Expect = 9.1
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 229 HLTRHMKLHQGVR-YKCDLCSKEFSC 253
+L RHM+ H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family
primarily contains translation initiation, elongation
and release factors. The GTP translation factor family
consists primarily of translation initiation,
elongation, and release factors, which play specific
roles in protein translation. In addition, the family
includes Snu114p, a component of the U5 small nuclear
riboprotein particle which is a component of the
spliceosome and is involved in excision of introns,
TetM, a tetracycline resistance gene that protects the
ribosome from tetracycline binding, and the unusual
subfamily CysN/ATPS, which has an unrelated function
(ATP sulfurylase) acquired through lateral transfer of
the EF1-alpha gene and development of a new function.
Length = 183
Score = 28.8 bits (65), Expect = 9.6
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 831 LIGIKFGPSGNRTRDLALTLIPGNPYFILEISKVDR 866
++ G +TR+ + G I+ ++K+DR
Sbjct: 92 VVDANEGVEP-QTREHLNIALAGGLPIIVAVNKIDR 126
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.133 0.411
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,648,715
Number of extensions: 4033492
Number of successful extensions: 3868
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3695
Number of HSP's successfully gapped: 289
Length of query: 986
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 880
Effective length of database: 6,236,078
Effective search space: 5487748640
Effective search space used: 5487748640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.5 bits)