BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17115
         (103 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
          Length = 1321

 Score = 30.4 bits (67), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 40  WWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIA 80
           ++IG+ WV  GS     M+ +F  V+M S  AL   GP +A
Sbjct: 338 FYIGVGWVHDGSLNFGDMLTTFSSVMMGS-MALGLAGPQLA 377


>pdb|4HVM|A Chain A, Crystal Structure Of Tallysomycin Biosynthesis Protein
           Tlmii
 pdb|4HVM|B Chain B, Crystal Structure Of Tallysomycin Biosynthesis Protein
           Tlmii
 pdb|4HVM|C Chain C, Crystal Structure Of Tallysomycin Biosynthesis Protein
           Tlmii
 pdb|4HVM|D Chain D, Crystal Structure Of Tallysomycin Biosynthesis Protein
           Tlmii
          Length = 493

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 42  IGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLR 95
           +G  W      F PA    F  V    ++ L      +A++ WW + L  L +R
Sbjct: 154 LGAVWQAYYGRFRPAQYRDFAEVA--DFHPLDRETVRVARHRWWSRRLPALPVR 205


>pdb|2JLN|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
           Transporter
 pdb|2JLO|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
           Transporter, In A Closed Conformation With
           Benzylhydantoin
          Length = 501

 Score = 25.4 bits (54), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 7   ASMFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLM 66
           A +    +F + R++ +    LH  + +   + +W G+ WV      +   V+     LM
Sbjct: 374 AGIMISDYFLVRRRRIS----LHDLYRTKGIYTYWRGVNWVALAVYAVALAVSFLTPDLM 429

Query: 67  YSYYALAALGPHIAKYLWWKK 87
           +    +AAL  HI    W  K
Sbjct: 430 FVTGLIAALLLHIPAMRWVAK 450


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.335    0.143    0.512 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,165,731
Number of Sequences: 62578
Number of extensions: 112615
Number of successful extensions: 251
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 4
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 45 (21.9 bits)