Query psy17115
Match_columns 103
No_of_seqs 118 out of 758
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 22:15:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 100.0 1.7E-42 3.6E-47 269.4 3.5 98 2-99 116-213 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 2.2E-41 4.7E-46 257.8 6.5 96 2-101 97-193 (250)
3 PTZ00251 fatty acid elongase; 100.0 1.7E-39 3.7E-44 252.0 6.1 96 2-102 118-214 (272)
4 KOG3072|consensus 100.0 3.1E-34 6.6E-39 223.3 0.7 97 1-102 124-220 (282)
5 PF12643 MazG-like: MazG-like 24.5 1.1E+02 0.0024 20.4 3.2 25 55-79 35-59 (98)
6 PF04387 PTPLA: Protein tyrosi 24.0 1.3E+02 0.0027 21.8 3.6 82 7-90 5-87 (164)
7 KOG3187|consensus 21.9 3.8E+02 0.0083 20.7 6.1 65 25-90 77-142 (223)
8 PF07851 TMPIT: TMPIT-like pro 17.4 1.3E+02 0.0028 24.5 2.7 35 18-53 172-206 (330)
9 PRK07424 bifunctional sterol d 16.4 60 0.0013 26.7 0.6 28 8-35 19-46 (406)
10 COG0558 PgsA Phosphatidylglyce 16.3 4.3E+02 0.0093 19.0 6.2 35 64-98 112-147 (192)
No 1
>KOG3071|consensus
Probab=100.00 E-value=1.7e-42 Score=269.42 Aligned_cols=98 Identities=49% Similarity=0.869 Sum_probs=95.3
Q ss_pred eeeehhhhhhHHHHhhHhcCCCceeeeehhhhhhhhhhhhhheeecccccchhhhhHhHHHHHHHHHHHHHHhhCCCccc
Q psy17115 2 RIATGASMFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAK 81 (103)
Q Consensus 2 ~~lSK~~El~DTvf~VLrkK~~~lsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~~~~~g~~~~~ 81 (103)
+++||++|++||+|+|||||++|+||||+|||++|++.+|.++++.++|++++.+.+|++||++||+||+++|+||+.++
T Consensus 116 yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~VHviMY~YYflsa~G~~v~~ 195 (274)
T KOG3071|consen 116 YYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSFVHVIMYGYYFLSAFGPRVQW 195 (274)
T ss_pred HHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhhHHHHHHHHHHHHhhCcCccc
Confidence 68999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhc
Q psy17115 82 YLWWKKYLTILQLRFDRG 99 (103)
Q Consensus 82 ~~~~k~~iT~~QivQ~~~ 99 (103)
.+|||+++|.+|++||.+
T Consensus 196 ~lWWkky~t~vQlvqf~~ 213 (274)
T KOG3071|consen 196 YLWWKKYITIVQLVQFLI 213 (274)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 999999999999999975
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.2e-41 Score=257.78 Aligned_cols=96 Identities=46% Similarity=0.808 Sum_probs=90.4
Q ss_pred eeeehhhhhhHHHHhhHhcCCCceeeeehhhhhhhhhhhhhheeecccccchhhhhHhHHHHHHHHHHHHHHhhCCC-cc
Q psy17115 2 RIATGASMFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPH-IA 80 (103)
Q Consensus 2 ~~lSK~~El~DTvf~VLrkK~~~lsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~~~~~g~~-~~ 80 (103)
|++||++|++||+|+||||| |++|||||||+++++++|.++++.++|+.++++.+|++||++||+||+++|+|.| .+
T Consensus 97 fylSK~~EllDTvflvLrkK--~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~a~g~~~~~ 174 (250)
T PF01151_consen 97 FYLSKYYELLDTVFLVLRKK--QLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFVHVIMYSYYFLSALGIRKVP 174 (250)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 68999999999999999999 9999999999999999999999988899999999999999999999999999965 32
Q ss_pred chhHHHHHHHHHHHHHhhccc
Q psy17115 81 KYLWWKKYLTILQLRFDRGNC 101 (103)
Q Consensus 81 ~~~~~k~~iT~~QivQ~~~g~ 101 (103)
.||||+||.+||+||.+|+
T Consensus 175 --~~~k~~IT~~Qi~QF~~~~ 193 (250)
T PF01151_consen 175 --RWWKKYITSLQIVQFVIGI 193 (250)
T ss_pred --hHHHHHHhHHhhhhhHHHH
Confidence 5899999999999999875
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=1.7e-39 Score=252.02 Aligned_cols=96 Identities=32% Similarity=0.562 Sum_probs=84.1
Q ss_pred eeeehhhhhhHHHHhhHhcCCCceeeeehhhhhhhhhhhhhheeecccccchh-hhhHhHHHHHHHHHHHHHHhhCCCcc
Q psy17115 2 RIATGASMFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFL-PAMVNSFIHVLMYSYYALAALGPHIA 80 (103)
Q Consensus 2 ~~lSK~~El~DTvf~VLrkK~~~lsfLHvyHH~~~~~~~w~~~~~~~~~~~~~-~~~~N~~VH~iMY~YY~~~~~g~~~~ 80 (103)
|++||++|++||+|+||||| |++|||||||++|++.+|.++. ++++... ++.+|++||++||+||+++|+|++.+
T Consensus 118 f~lsK~~El~DTvF~VLRKK--qvsFLHvYHH~~~~~~~w~~~~--~g~~~~~~~~~lNs~VH~iMY~YY~lsa~g~~~~ 193 (272)
T PTZ00251 118 FSISKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSYQ--QGSSIWICAAAMNYFVHSIMYFYFALSEAGFKKL 193 (272)
T ss_pred HHHHHHHHHHhHhhhhhcCC--CchHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 68999999999999999999 9999999999999999999763 4444433 58999999999999999999999732
Q ss_pred chhHHHHHHHHHHHHHhhcccc
Q psy17115 81 KYLWWKKYLTILQLRFDRGNCN 102 (103)
Q Consensus 81 ~~~~~k~~iT~~QivQ~~~g~~ 102 (103)
..||||+||.+||+||++|+.
T Consensus 194 -~~~~kk~IT~lQi~Qfv~~~~ 214 (272)
T PTZ00251 194 -VKPFAMYITLLQITQMVGGLF 214 (272)
T ss_pred -hhHHHHHHHHHHHHHHHHHHH
Confidence 225999999999999999863
No 4
>KOG3072|consensus
Probab=99.98 E-value=3.1e-34 Score=223.32 Aligned_cols=97 Identities=32% Similarity=0.448 Sum_probs=88.4
Q ss_pred CeeeehhhhhhHHHHhhHhcCCCceeeeehhhhhhhhhhhhhheeecccccchhhhhHhHHHHHHHHHHHHHHhhCCCcc
Q psy17115 1 MRIATGASMFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIA 80 (103)
Q Consensus 1 ~~~lSK~~El~DTvf~VLrkK~~~lsfLHvyHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~~~~~g~~~~ 80 (103)
+|.+||..|++||+|+||||| |++|||||||++++++.|.+++.. .+.+.+++.+|.+||++||+||+++++|.|+|
T Consensus 124 ~fvlSK~~ElgDT~FiVLRKr--PliFlHWYHHi~~~iy~~~~y~~~-~a~~rw~i~mNy~vHa~MY~YY~lrsl~ir~P 200 (282)
T KOG3072|consen 124 LFVLSKAPELGDTIFIVLRKR--PLIFLHWYHHILVLIYAWHSYIEK-VAWGRWFIWMNYLVHAFMYSYYALRSLGIRLP 200 (282)
T ss_pred HHHHHhhhhhhceeEEEeccC--ccEEEechhhheeeeeeeeecccC-CcCceEEEEEehhHHHHHHHHHHHHHcCCCCC
Confidence 368999999999999999999 999999999999999999998753 34455678999999999999999999999998
Q ss_pred chhHHHHHHHHHHHHHhhcccc
Q psy17115 81 KYLWWKKYLTILQLRFDRGNCN 102 (103)
Q Consensus 81 ~~~~~k~~iT~~QivQ~~~g~~ 102 (103)
+ +..+.||.+||+||++||-
T Consensus 201 k--~vam~iTtlQi~Qm~i~~~ 220 (282)
T KOG3072|consen 201 K--SVAMAITTLQIVQMVIGCY 220 (282)
T ss_pred h--HHHHHHHHHHHHHHHHHHh
Confidence 6 5699999999999999984
No 5
>PF12643 MazG-like: MazG-like family
Probab=24.51 E-value=1.1e+02 Score=20.42 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.8
Q ss_pred hhhHhHHHHHHHHHHHHHHhhCCCc
Q psy17115 55 PAMVNSFIHVLMYSYYALAALGPHI 79 (103)
Q Consensus 55 ~~~~N~~VH~iMY~YY~~~~~g~~~ 79 (103)
-.+.+.+..+++|+|-+...+|..+
T Consensus 35 e~i~deLAdvii~~ylLa~rLGid~ 59 (98)
T PF12643_consen 35 EAIKDELADVIIYCYLLADRLGIDF 59 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4689999999999999999999984
No 6
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=24.04 E-value=1.3e+02 Score=21.77 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=47.9
Q ss_pred hhhhhHHHHhhHhcCCCceeeeehhhhhhhhhhhhhheeecccccc-hhhhhHhHHHHHHHHHHHHHHhhCCCccchhHH
Q psy17115 7 ASMFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGST-FLPAMVNSFIHVLMYSYYALAALGPHIAKYLWW 85 (103)
Q Consensus 7 ~~El~DTvf~VLrkK~~~lsfLHvyHH~~~~~~~w~~~~~~~~~~~-~~~~~~N~~VH~iMY~YY~~~~~g~~~~~~~~~ 85 (103)
++|.+...+=+.|-+ -..+++++.-=..+++.............. ....+.=+..-++=|+||..+-.|.. |+.+.|
T Consensus 5 ~lEi~h~~~Glv~S~-~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~-p~~L~W 82 (164)
T PF04387_consen 5 VLEILHAALGLVRSP-VLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIV-PYWLTW 82 (164)
T ss_pred HHHHHHHHhccccCc-cHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcCCC-chHHHH
Confidence 456666665555544 134788887655544443332221111111 12356678889999999999998865 445557
Q ss_pred HHHHH
Q psy17115 86 KKYLT 90 (103)
Q Consensus 86 k~~iT 90 (103)
-|+-+
T Consensus 83 LRYs~ 87 (164)
T PF04387_consen 83 LRYSA 87 (164)
T ss_pred HHHhh
Confidence 66644
No 7
>KOG3187|consensus
Probab=21.93 E-value=3.8e+02 Score=20.73 Aligned_cols=65 Identities=22% Similarity=0.430 Sum_probs=43.6
Q ss_pred eeeeehhhhhhhhhhhhhheeecccccc-hhhhhHhHHHHHHHHHHHHHHhhCCCccchhHHHHHHH
Q psy17115 25 LTFLHVYHHSTMFFLWWIGIKWVPSGST-FLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLT 90 (103)
Q Consensus 25 lsfLHvyHH~~~~~~~w~~~~~~~~~~~-~~~~~~N~~VH~iMY~YY~~~~~g~~~~~~~~~k~~iT 90 (103)
+++.|+-+=...++.......+...+.+ .....+=+..-.+=|+||+.+..|- .|+.+-|-|+=+
T Consensus 77 ~t~~Qv~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~-~p~~l~wlRYt~ 142 (223)
T KOG3187|consen 77 VTLFQVSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGV-LPKLLTWLRYTL 142 (223)
T ss_pred eeeeeecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccC-CchhhhHhhhhh
Confidence 4788888777765555544443332222 2335677888899999999999987 666666777643
No 8
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=17.40 E-value=1.3e+02 Score=24.53 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=22.6
Q ss_pred HhcCCCceeeeehhhhhhhhhhhhhheeecccccch
Q psy17115 18 LRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTF 53 (103)
Q Consensus 18 LrkK~~~lsfLHvyHH~~~~~~~w~~~~~~~~~~~~ 53 (103)
||-..+++--==++||-....++-..+.| |+|..+
T Consensus 172 L~~NGS~Ik~WW~~HHy~s~~~s~v~Ltw-p~~~~~ 206 (330)
T PF07851_consen 172 LIVNGSRIKGWWVFHHYISTFLSGVMLTW-PDGEAY 206 (330)
T ss_pred hccCCCcchHHHHHHHHHHHHHHhccccC-CCcHHH
Confidence 33333455544578999888888887777 555443
No 9
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=16.38 E-value=60 Score=26.72 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=19.4
Q ss_pred hhhhHHHHhhHhcCCCceeeeehhhhhh
Q psy17115 8 SMFCDTFFFILRKKDAQLTFLHVYHHST 35 (103)
Q Consensus 8 ~El~DTvf~VLrkK~~~lsfLHvyHH~~ 35 (103)
.|.+.-..=+|-.+.++++-+|.+||-.
T Consensus 19 ~~~~~d~~h~~~h~~~~l~~~h~~hh~~ 46 (406)
T PRK07424 19 VEIVRDSYHALAHQWNPLYRLHNWHHRV 46 (406)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHhh
Confidence 4665333444556667999999999964
No 10
>COG0558 PgsA Phosphatidylglycerophosphate synthase [Lipid metabolism]
Probab=16.29 E-value=4.3e+02 Score=18.97 Aligned_cols=35 Identities=26% Similarity=0.071 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhC-CCccchhHHHHHHHHHHHHHhh
Q psy17115 64 VLMYSYYALAALG-PHIAKYLWWKKYLTILQLRFDR 98 (103)
Q Consensus 64 ~iMY~YY~~~~~g-~~~~~~~~~k~~iT~~QivQ~~ 98 (103)
.+.|..=..++.| ....+..++.|..|..|++=..
T Consensus 112 ~vs~~r~~~~~~g~~~~~~~~~~gk~~t~~~~~~i~ 147 (192)
T COG0558 112 LVSYLRALAASLGGRDYVGASGRGKRKTILQMVALL 147 (192)
T ss_pred HHHHHHHHHHHhcCCceECcchhhHHHHHHHHHHHH
Confidence 3445544555554 2222334688999999997543
Done!