Query psy17115
Match_columns 103
No_of_seqs 118 out of 758
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:15:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wb6_A AFV1-102; archaeal viru 18.3 49 0.0017 21.9 1.4 16 6-21 39-54 (130)
2 4dkl_A MU-type opioid receptor 13.9 1.1E+02 0.0039 22.2 2.6 17 55-71 427-443 (464)
3 3vw7_A Proteinase-activated re 13.1 97 0.0033 22.8 2.1 16 55-70 436-451 (484)
4 1m5a_B Insulin B chain; alpha 12.3 98 0.0034 15.9 1.3 14 8-21 9-22 (30)
5 3eml_A Human adenosine A2A rec 11.8 1.4E+02 0.0049 21.8 2.6 16 55-70 438-453 (488)
6 2ks9_A Substance-P receptor; w 11.6 1.5E+02 0.0051 20.9 2.6 15 56-70 294-308 (364)
7 4eiy_A Adenosine receptor A2A/ 11.0 1.6E+02 0.0054 21.3 2.6 16 55-70 397-412 (447)
8 3rze_A Histamine H1 receptor, 10.7 1.6E+02 0.0056 21.3 2.6 16 55-70 414-429 (452)
9 3uon_A Human M2 muscarinic ace 10.4 1.2E+02 0.0041 22.2 1.8 16 55-70 429-444 (467)
10 3pbl_A D(3) dopamine receptor, 10.4 1.7E+02 0.0058 21.5 2.6 16 55-70 443-458 (481)
No 1
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus filamentous virus 1}
Probab=18.35 E-value=49 Score=21.88 Aligned_cols=16 Identities=31% Similarity=0.575 Sum_probs=13.4
Q ss_pred hhhhhhHHHHhhHhcC
Q psy17115 6 GASMFCDTFFFILRKK 21 (103)
Q Consensus 6 K~~El~DTvf~VLrkK 21 (103)
-.-|++|..|+|..|-
T Consensus 39 pmsefldsmflviekl 54 (130)
T 2wb6_A 39 PMSEFLDSMFLVIEKL 54 (130)
T ss_dssp EHHHHHHHHHHHHHTT
T ss_pred EHHHHHHHHHHHHHHh
Confidence 3569999999999874
No 2
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=13.87 E-value=1.1e+02 Score=22.20 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=14.1
Q ss_pred hhhHhHHHHHHHHHHHH
Q psy17115 55 PAMVNSFIHVLMYSYYA 71 (103)
Q Consensus 55 ~~~~N~~VH~iMY~YY~ 71 (103)
.+.+|+.++|+.|.+.-
T Consensus 427 L~~~ns~~NPiIY~~~~ 443 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAFLD 443 (464)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHhhhchhHHHHHHhh
Confidence 46889999999998753
No 3
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=13.08 E-value=97 Score=22.84 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.3
Q ss_pred hhhHhHHHHHHHHHHH
Q psy17115 55 PAMVNSFIHVLMYSYY 70 (103)
Q Consensus 55 ~~~~N~~VH~iMY~YY 70 (103)
.+.+|+.++|+.|.+.
T Consensus 436 L~~~ns~iNPiIY~~~ 451 (484)
T 3vw7_A 436 VSSISCCIDPLIYYYA 451 (484)
T ss_dssp HHTTHHHHHHHHHHHT
T ss_pred HHHhccccchHHHHHh
Confidence 3568999999999864
No 4
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=12.31 E-value=98 Score=15.94 Aligned_cols=14 Identities=7% Similarity=0.472 Sum_probs=11.4
Q ss_pred hhhhHHHHhhHhcC
Q psy17115 8 SMFCDTFFFILRKK 21 (103)
Q Consensus 8 ~El~DTvf~VLrkK 21 (103)
-||+|+..+|-.-|
T Consensus 9 s~LVdaL~~vCgdR 22 (30)
T 1m5a_B 9 SHLVEALYLVCGER 22 (30)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhccC
Confidence 37899999998765
No 5
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=11.76 E-value=1.4e+02 Score=21.83 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=13.8
Q ss_pred hhhHhHHHHHHHHHHH
Q psy17115 55 PAMVNSFIHVLMYSYY 70 (103)
Q Consensus 55 ~~~~N~~VH~iMY~YY 70 (103)
.+.+|+.++|+.|.+.
T Consensus 438 l~~~ns~~NPiIY~~~ 453 (488)
T 3eml_A 438 LSHTNSVVNPFIYAYR 453 (488)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhhhhhc
Confidence 4689999999999875
No 6
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=11.57 E-value=1.5e+02 Score=20.87 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=12.8
Q ss_pred hhHhHHHHHHHHHHH
Q psy17115 56 AMVNSFIHVLMYSYY 70 (103)
Q Consensus 56 ~~~N~~VH~iMY~YY 70 (103)
..+|+.++|+.|.+.
T Consensus 294 ~~~ns~~NPiiY~~~ 308 (364)
T 2ks9_A 294 AMSSTMYNPIIYCCL 308 (364)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567999999999864
No 7
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=10.98 E-value=1.6e+02 Score=21.34 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=13.5
Q ss_pred hhhHhHHHHHHHHHHH
Q psy17115 55 PAMVNSFIHVLMYSYY 70 (103)
Q Consensus 55 ~~~~N~~VH~iMY~YY 70 (103)
...+|+.++|+.|.+.
T Consensus 397 l~~~ns~~NPiIY~~~ 412 (447)
T 4eiy_A 397 LSHTNSVVNPFIYAYR 412 (447)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhhHhc
Confidence 4578999999999865
No 8
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=10.74 E-value=1.6e+02 Score=21.30 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=13.8
Q ss_pred hhhHhHHHHHHHHHHH
Q psy17115 55 PAMVNSFIHVLMYSYY 70 (103)
Q Consensus 55 ~~~~N~~VH~iMY~YY 70 (103)
...+|+.++|+.|.+.
T Consensus 414 L~~~ns~~NPiIY~~~ 429 (452)
T 3rze_A 414 LGYINSTLNPLIYPLC 429 (452)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhc
Confidence 4689999999999874
No 9
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=10.44 E-value=1.2e+02 Score=22.16 Aligned_cols=16 Identities=25% Similarity=0.305 Sum_probs=13.9
Q ss_pred hhhHhHHHHHHHHHHH
Q psy17115 55 PAMVNSFIHVLMYSYY 70 (103)
Q Consensus 55 ~~~~N~~VH~iMY~YY 70 (103)
...+|+.++|+.|.+.
T Consensus 429 L~~~ns~~NPiIY~~~ 444 (467)
T 3uon_A 429 LCYINSTINPACYALC 444 (467)
T ss_dssp HHHHTTTHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHc
Confidence 4689999999999865
No 10
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=10.38 E-value=1.7e+02 Score=21.49 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=13.5
Q ss_pred hhhHhHHHHHHHHHHH
Q psy17115 55 PAMVNSFIHVLMYSYY 70 (103)
Q Consensus 55 ~~~~N~~VH~iMY~YY 70 (103)
...+|+.++|+.|.+.
T Consensus 443 L~~~ns~~NPiIY~~~ 458 (481)
T 3pbl_A 443 LGYVNSALNPVIYTTF 458 (481)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchHHHHHc
Confidence 4678999999999864
Done!