Query psy17115
Match_columns 103
No_of_seqs 118 out of 758
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 22:15:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17115.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17115hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 37.3 6.4 0.00047 20.2 1.2 13 11-25 18-30 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 28.5 5.9 0.00043 21.2 0.1 11 11-21 17-27 (45)
3 d1tuba2 d.79.2.1 (A:246-440) T 10.3 35 0.0025 22.1 0.6 19 6-31 145-163 (195)
4 d2axtf1 f.23.38.1 (F:11-45) Cy 8.5 32 0.0024 17.0 -0.2 13 84-96 22-34 (35)
5 d1wqji1 g.1.1.1 (I:2-63) Insul 8.4 64 0.0047 17.8 1.2 13 9-21 8-20 (62)
6 d2v5pc1 g.1.1.1 (C:6-63) Insul 8.4 65 0.0048 17.6 1.2 13 9-21 7-19 (58)
7 d1u19a_ f.13.1.2 (A:) Rhodopsi 8.1 83 0.0061 20.3 1.8 15 56-70 295-309 (348)
8 d1xlya_ a.232.1.1 (A:) RNA-bin 7.4 58 0.0042 22.4 0.7 18 3-20 22-39 (232)
9 d1sh0a_ e.8.1.4 (A:) Viral RNA 6.8 2.1E+02 0.015 20.9 3.8 28 48-76 294-321 (502)
10 d1khva_ e.8.1.4 (A:) Viral RNA 6.6 2E+02 0.015 20.8 3.7 23 48-71 303-325 (497)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=37.33 E-value=6.4 Score=20.19 Aligned_cols=13 Identities=38% Similarity=0.651 Sum_probs=10.0
Q ss_pred hHHHHhhHhcCCCce
Q psy17115 11 CDTFFFILRKKDAQL 25 (103)
Q Consensus 11 ~DTvf~VLrkK~~~l 25 (103)
+--+++||+|| |+
T Consensus 18 laQi~lVlKKK--Q~ 30 (37)
T d1vf5c3 18 LAQLMLILKKK--QV 30 (37)
T ss_dssp HHHHHHHHHTG--GG
T ss_pred HHHHHHHHHHH--HH
Confidence 44578999999 65
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=28.47 E-value=5.9 Score=21.16 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=9.0
Q ss_pred hHHHHhhHhcC
Q psy17115 11 CDTFFFILRKK 21 (103)
Q Consensus 11 ~DTvf~VLrkK 21 (103)
+--+++||+||
T Consensus 17 laQi~LVLKKK 27 (45)
T d1q90a3 17 LTQVLLVLKKK 27 (45)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45578999999
No 3
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=10.30 E-value=35 Score=22.06 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=11.6
Q ss_pred hhhhhhHHHHhhHhcCCCceeeeehh
Q psy17115 6 GASMFCDTFFFILRKKDAQLTFLHVY 31 (103)
Q Consensus 6 K~~El~DTvf~VLrkK~~~lsfLHvy 31 (103)
|+.+=+|.. .+|| .|||||
T Consensus 145 ~i~~~Fdkl---~~rk----Aflh~Y 163 (195)
T d1tuba2 145 RLDHKFDLM---YAKR----AFVHWY 163 (195)
T ss_dssp HHHHHHHHH---TTTT----CCTTTG
T ss_pred HHHHHHHHH---Hhhc----hHHHHh
Confidence 444445554 3444 899999
No 4
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.49 E-value=32 Score=17.01 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q psy17115 84 WWKKYLTILQLRF 96 (103)
Q Consensus 84 ~~k~~iT~~QivQ 96 (103)
.+--.||.||.+|
T Consensus 22 fFlGai~aMqfiq 34 (35)
T d2axtf1 22 FFLGAIAAMQFIQ 34 (35)
T ss_dssp HHHHHHHHHTTCC
T ss_pred hhHhHHHHHHHhh
Confidence 3456678888766
No 5
>d1wqji1 g.1.1.1 (I:2-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.44 E-value=64 Score=17.77 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=10.4
Q ss_pred hhhHHHHhhHhcC
Q psy17115 9 MFCDTFFFILRKK 21 (103)
Q Consensus 9 El~DTvf~VLrkK 21 (103)
||+||.-+|-.-|
T Consensus 8 ~LvdaL~~VCG~r 20 (62)
T d1wqji1 8 ELVDALQFVCGDR 20 (62)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHccC
Confidence 7899999987554
No 6
>d2v5pc1 g.1.1.1 (C:6-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.39 E-value=65 Score=17.57 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.6
Q ss_pred hhhHHHHhhHhcC
Q psy17115 9 MFCDTFFFILRKK 21 (103)
Q Consensus 9 El~DTvf~VLrkK 21 (103)
||+||.-+|-.-|
T Consensus 7 ~LVdaL~~VCg~r 19 (58)
T d2v5pc1 7 ELVDTLQFVCGDR 19 (58)
T ss_dssp HHHHHHHHHSTTS
T ss_pred HHHHHHHHHHcCC
Confidence 7899998888655
No 7
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.08 E-value=83 Score=20.26 Aligned_cols=15 Identities=13% Similarity=0.261 Sum_probs=12.9
Q ss_pred hhHhHHHHHHHHHHH
Q psy17115 56 AMVNSFIHVLMYSYY 70 (103)
Q Consensus 56 ~~~N~~VH~iMY~YY 70 (103)
..+|+.++|+.|.+.
T Consensus 295 ~~~ns~iNPiIY~~~ 309 (348)
T d1u19a_ 295 AKTSAVYNPVIYIMM 309 (348)
T ss_dssp GGGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 579999999999864
No 8
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.39 E-value=58 Score=22.39 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=16.6
Q ss_pred eeehhhhhhHHHHhhHhc
Q psy17115 3 IATGASMFCDTFFFILRK 20 (103)
Q Consensus 3 ~lSK~~El~DTvf~VLrk 20 (103)
|+|.+++++.-.+.++||
T Consensus 22 YiS~yv~~LNk~I~~lRr 39 (232)
T d1xlya_ 22 YLSSYIHVLNKFISHLRR 39 (232)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789999999999999987
No 9
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]}
Probab=6.79 E-value=2.1e+02 Score=20.88 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=17.8
Q ss_pred ccccchhhhhHhHHHHHHHHHHHHHHhhC
Q psy17115 48 PSGSTFLPAMVNSFIHVLMYSYYALAALG 76 (103)
Q Consensus 48 ~~~~~~~~~~~N~~VH~iMY~YY~~~~~g 76 (103)
|+|+. ..+.+||.+|.+...|=+....+
T Consensus 294 PSG~p-~Tsi~NSi~N~i~~~~a~~~~~~ 321 (502)
T d1sh0a_ 294 PSGVP-CTSQWNSIAHWLLTLCALSEVTN 321 (502)
T ss_dssp CTTST-THHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCc-eeeeehhHHHHHHHHHHHHHhhC
Confidence 45544 45799999998775554444433
No 10
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=6.59 E-value=2e+02 Score=20.85 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=15.9
Q ss_pred ccccchhhhhHhHHHHHHHHHHHH
Q psy17115 48 PSGSTFLPAMVNSFIHVLMYSYYA 71 (103)
Q Consensus 48 ~~~~~~~~~~~N~~VH~iMY~YY~ 71 (103)
|+|+. ..+++||.++.+|..|=.
T Consensus 303 PSG~p-~Tsi~NSi~N~i~i~~a~ 325 (497)
T d1khva_ 303 PSGMP-FTSVINSICHWLLWSAAV 325 (497)
T ss_dssp CTTST-THHHHHHHHHHHHHHHHH
T ss_pred CCCCc-eeehhhhHHHHHHHHHHH
Confidence 45544 357999999998766533
Done!