RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17115
(103 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 119 bits (300), Expect = 6e-35
Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 12 DTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYA 71
DT F +LRKK QL+FLHVYHH+TM W+G+K+ P G + A++NSF+HV+MY YY
Sbjct: 103 DTVFLVLRKKQRQLSFLHVYHHATMLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYF 162
Query: 72 LAALGPHIAKYLWWKKYLTILQL 94
LAALG +WWKKY+T LQ+
Sbjct: 163 LAALGAR-GLPVWWKKYITQLQI 184
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 46.4 bits (110), Expect = 3e-07
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 10 FCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSY 69
F DTFF I+ K +L FL +HH T+F W+ + S AM N F+H +MY Y
Sbjct: 126 FGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSYQQGSSIWICAAAM-NYFVHSIMYFY 182
Query: 70 YALAALG-PHIAKYLWWKKYLTILQL 94
+AL+ G + K + Y+T+LQ+
Sbjct: 183 FALSEAGFKKLVKP--FAMYITLLQI 206
>gnl|CDD|183737 PRK12773, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 646
Score = 28.5 bits (63), Expect = 0.58
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 59 NSFIHVLMYSYYALAALGPHIAKYLWWKKYLTIL 92
+SF+ ++ +Y G K+++WK+Y I+
Sbjct: 44 DSFVKSVLDVFYRFMLFGKRFGKFIFWKQYYDIV 77
>gnl|CDD|119329 cd06572, Histidinol_dh, Histidinol dehydrogenase, HisD, E.C
1.1.1.23. Histidinol dehydrogenase catalyzes the last
two steps in the L-histidine biosynthesis pathway, which
is conserved in bacteria, archaea, fungi, and plants.
These last two steps are (i) the NAD-dependent oxidation
of L-histidinol to L-histidinaldehyde, and (ii) the
NAD-dependent oxidation of L-histidinaldehyde to
L-histidine. In most fungi and in the unicellular
choanoflagellate Monosiga bevicollis, the HisD domain is
fused with units that catalyze the second and third
biosynthesis steps in this same pathway.
Length = 390
Score = 28.2 bits (64), Expect = 0.60
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 58 VNSF---IHVLMYSYYALAALGPHIAK 81
V+ F I V YS L AL P +A
Sbjct: 354 VDDFLKRITVQEYSKEGLRALAPAVAT 380
>gnl|CDD|220527 pfam10026, DUF2268, Predicted Zn-dependent protease (DUF2268).
This domain, found in various hypothetical bacterial
proteins, as well as predicted zinc dependent
proteases, has no known function.
Length = 195
Score = 26.9 bits (60), Expect = 1.8
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 14 FFFIL----RKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMV 58
F F+L K + H YHH +K T L +++
Sbjct: 52 FLFLLPNDYDKNELAALLAHEYHHVC----RLSYLKKDEKDVTLLDSII 96
>gnl|CDD|234853 PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol
dehydrogenase; Reviewed.
Length = 425
Score = 26.2 bits (59), Expect = 3.6
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 58 VNSF---IHVLMYSYYALAALGPHIA 80
V F V+ S L ALGP I
Sbjct: 381 VYDFLKRSSVIELSKEGLKALGPAIV 406
>gnl|CDD|171815 PRK12911, PRK12911, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 1403
Score = 25.6 bits (56), Expect = 6.2
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 17/57 (29%)
Query: 8 SMFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIK----------WVPSGSTFL 54
++F FFF++ Q T LH+ + +IGIK WV SGS +
Sbjct: 1050 ALFMTKFFFMIWMNKTQETQLHMMNK-------FIGIKHDFLKECKRLWVVSGSVLV 1099
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 25.2 bits (56), Expect = 6.9
Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 2 RIA--TGASMFCDTF 14
RIA TGA + +TF
Sbjct: 219 RIAAATGARLLAETF 233
>gnl|CDD|131806 TIGR02759, TraD_Ftype, type IV conjugative transfer system
coupling protein TraD. The TraD protein performs an
essential coupling function in conjugative type IV
secretion systems. This protein sits at the inner
membrane in contact with the assembled pilus and its
scaffold as well as the relaxosome-plasmid DNA complex
(through TraM).
Length = 566
Score = 25.0 bits (55), Expect = 8.4
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 24 QLTFLHVYHHSTMFF------LWWIGIKWV--PSGSTFLPAMVNSFIHVLMYSYYALAAL 75
Q+TF H+ MFF +W+ I ++ + A VN+F+ + Y L L
Sbjct: 6 QITF----HNIRMFFQVTKTLFYWMFILFIILTGLILWFMASVNTFLGNIYYWEAQLFTL 61
Query: 76 GPHIAK 81
HI
Sbjct: 62 VGHIKT 67
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.335 0.143 0.512
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,411,530
Number of extensions: 458385
Number of successful extensions: 698
Number of sequences better than 10.0: 1
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 36
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.4 bits)