RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17115
         (103 letters)



>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
           genomics, protein structure initiative; 2.20A
           {Campylobacter jejuni}
          Length = 464

 Score = 25.6 bits (57), Expect = 2.9
 Identities = 5/14 (35%), Positives = 8/14 (57%)

Query: 14  FFFILRKKDAQLTF 27
           + F+ +K D  L F
Sbjct: 310 YIFLSKKCDTHLEF 323


>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
           DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
           {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
          Length = 263

 Score = 24.4 bits (53), Expect = 9.2
 Identities = 1/25 (4%), Positives = 5/25 (20%)

Query: 9   MFCDTFFFILRKKDAQLTFLHVYHH 33
               +   +  + +          H
Sbjct: 116 CMFSSIGHLAGQAELDAALERFAAH 140


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.335    0.143    0.512 

Gapped
Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,695,901
Number of extensions: 84770
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 20
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (24.1 bits)