Query psy17120
Match_columns 137
No_of_seqs 175 out of 1152
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:24:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1094|consensus 99.9 4.9E-27 1.1E-31 202.5 7.0 111 1-137 24-134 (807)
2 smart00231 FA58C Coagulation f 99.9 3.5E-21 7.6E-26 139.2 10.5 90 1-131 1-90 (139)
3 cd00057 FA58C Substituted upda 99.8 1.4E-18 3.1E-23 124.3 11.5 94 4-131 1-94 (143)
4 KOG3516|consensus 99.3 6.1E-13 1.3E-17 121.6 1.1 95 2-134 30-124 (1306)
5 PF00754 F5_F8_type_C: F5/8 ty 99.1 3.7E-10 8.1E-15 78.1 8.7 67 58-131 19-85 (129)
6 KOG4276|consensus 91.4 0.5 1.1E-05 33.0 4.7 51 77-130 4-54 (113)
7 smart00607 FTP eel-Fucolectin 83.1 2 4.2E-05 31.8 3.9 42 77-120 48-89 (151)
8 PF06588 Muskelin_N: Muskelin 73.6 27 0.00059 27.2 7.7 64 57-126 23-87 (199)
9 smart00136 LamNT Laminin N-ter 62.0 50 0.0011 26.2 7.3 58 66-130 73-130 (238)
10 PF07738 Sad1_UNC: Sad1 / UNC- 59.4 41 0.00088 23.6 5.9 59 66-129 22-82 (135)
11 PF00055 Laminin_N: Laminin N- 47.7 66 0.0014 25.4 5.9 58 66-130 69-128 (237)
12 cd08666 APC10-HECTD3 APC10-lik 44.2 41 0.00089 24.5 3.9 39 59-100 23-61 (134)
13 cd08366 APC10 APC10 subunit of 40.7 52 0.0011 23.9 4.0 57 60-122 23-80 (139)
14 cd02847 Chitobiase_C_term Chit 36.1 32 0.00069 22.6 2.0 21 112-132 31-51 (78)
15 PF02012 BNR: BNR/Asp-box repe 29.0 61 0.0013 14.0 1.9 11 118-128 2-12 (12)
16 cd08159 APC10-like APC10-like 21.5 1.8E+02 0.0039 20.9 4.0 41 59-102 18-58 (129)
17 PF13285 DUF4073: Domain of un 21.1 83 0.0018 23.5 2.2 20 113-132 106-125 (158)
18 KOG4350|consensus 20.2 45 0.00098 29.2 0.7 50 77-131 323-372 (620)
No 1
>KOG1094|consensus
Probab=99.94 E-value=4.9e-27 Score=202.46 Aligned_cols=111 Identities=49% Similarity=0.934 Sum_probs=106.0
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..+|||++|.|||+||||||+|+ ...+|+ +|||+.+.+++||||+.++.....
T Consensus 24 ~C~~~LGMqn~~I~D~qIsASSs~d-qSt~~~------------------------~~rl~se~g~GAWCPk~~v~~~~~ 78 (807)
T KOG1094|consen 24 KCRYALGMQNRTIPDSQISASSSFD-QSTGPQ------------------------HARLHSEDGSGAWCPKGQVNSKSK 78 (807)
T ss_pred HhhhhhcCCCCCCChhhcccccccc-cccccc------------------------cccccccCCCcccCCCcccCccch
Confidence 4999999999999999999999998 788888 999999999999999999888889
Q ss_pred ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCCeeC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKEV 137 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g~~~ 137 (137)
|||||||...+.||.|.||||.+.|.|.+|.+.|+|.|+.+| ..|..|++..|++|
T Consensus 79 E~LQvdl~~~hlit~V~TQGR~~~G~G~Efa~~y~I~Y~Rpg-~~Wi~wk~r~g~ev 134 (807)
T KOG1094|consen 79 EYLQVDLQRLHLITSVETQGRHAGGLGKEFARAYKIRYSRPG-LRWISWKDRWGQEV 134 (807)
T ss_pred hheEEeeeceEEEEEeeeccccCCCccceehhheeeeeccCc-chheeeccccCcee
Confidence 999999999999999999999999999999999999999999 89999999999886
No 2
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=99.86 E-value=3.5e-21 Score=139.20 Aligned_cols=90 Identities=34% Similarity=0.620 Sum_probs=77.6
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..||||++ |++|+|||. .+.|+ +|||+.. ..++|||+. ++..
T Consensus 1 ~c~~~lG~~~----d~~itasS~----~~~~~------------------------~~rL~~~-~~~~W~~~~---~~~~ 44 (139)
T smart00231 1 PCNEPLGLES----DSQITASSS----YWAAK------------------------IARLNGG-SDGAWCPAK---NSLP 44 (139)
T ss_pred CCCccccCCc----cccEEEcCC----CCCCC------------------------ccCcCcC-CCCcccCCC---CCCC
Confidence 5999999998 999999996 35677 9999964 347999985 6778
Q ss_pred ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
+||||||++++.|++|++||+.+. ..||+.|.+ ||.|+ ..|..|.+
T Consensus 45 ~wlqvDLg~~~~v~~i~~qg~~~~---~~~~~~~~~-~s~dg-~~W~~~~~ 90 (139)
T smart00231 45 PWIQVDLGRTRTVTGVITGGRHGD---GDGVTYKLL-YSDDG-NNWTTYKD 90 (139)
T ss_pred ceeEeeccCcEEEEEEEecccCCC---CcEEEEEEE-EEeCC-CCEeEEeC
Confidence 999999999999999999997443 589999988 99999 99999975
No 3
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=99.79 E-value=1.4e-18 Score=124.27 Aligned_cols=94 Identities=35% Similarity=0.625 Sum_probs=80.7
Q ss_pred CcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCceE
Q psy17120 4 GALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYI 83 (137)
Q Consensus 4 ~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~wL 83 (137)
.||||++|. +|.+|+|||.+. ..+.|. +++++. ...||+.. .+..+||
T Consensus 1 ~~~g~~~~~-~~~~vtaSS~~~-~~~~~~------------------------~~dg~~---~t~W~~~~---~~~~~wi 48 (143)
T cd00057 1 EPLGMESGL-ADDQITASSSYS-SGWEAS------------------------RARLNS---DNAWTPAV---NDPPQWL 48 (143)
T ss_pred CCCcccCCC-CCCCEEEEecCC-CCCCcC------------------------eeecCC---CCcccCCC---CCCCceE
Confidence 489999999 999999999876 356777 787776 37899985 4678999
Q ss_pred EeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 84 EVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 84 QVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
||||++++.|++|.+|++.+.. ...+++.|+|+||.|| ..|..+.+
T Consensus 49 ~vDL~~~~~i~~v~i~~~~~~~-~~~~~~~~~i~~s~dg-~~W~~~~~ 94 (143)
T cd00057 49 QVDLGKTRRVTGIQTQGRKGGG-SSEWVTSYKVQYSLDG-ETWTTYKD 94 (143)
T ss_pred EEECCCCEEEEEEEEccCCCCC-ccCeeEEEEEEEECCC-CCEeEEEc
Confidence 9999999999999999987521 2589999999999999 99999886
No 4
>KOG3516|consensus
Probab=99.29 E-value=6.1e-13 Score=121.59 Aligned_cols=95 Identities=26% Similarity=0.560 Sum_probs=79.7
Q ss_pred CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCc
Q psy17120 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHE 81 (137)
Q Consensus 2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~ 81 (137)
|..|| +..|+.-.+.|||... ..++|. .+|+.. .++|.|.. ++..+
T Consensus 30 cde~l---~s~L~~v~f~ssS~is-~s~gp~------------------------~~~~~G---~~gwsp~~---~~~~~ 75 (1306)
T KOG3516|consen 30 CDEPL---NSGLPAVAFLSSSAIS-QSHGPK------------------------LNRRVG---ISGWSPKI---SNYNQ 75 (1306)
T ss_pred CCchh---hhhhhHHHhhhhhhhh-hcccch------------------------hhhhcC---cccccccc---Ccccc
Confidence 66666 4456667788888765 567776 677665 48999996 78899
Q ss_pred eEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120 82 YIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNG 134 (137)
Q Consensus 82 wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g 134 (137)
|||+||++++.|++|+|||+.+. +.||+.|.++|++.+ ..|++|....+
T Consensus 76 wlq~dLg~~~ev~aVatqg~~~S---ddwvt~y~l~~sD~g-~~w~~y~~~~~ 124 (1306)
T KOG3516|consen 76 WLQLDLGKRMEVTAVATQGRYGS---DDWVTSYILQYSDPG-RNWKTYSQEGS 124 (1306)
T ss_pred eeeeccCCceeeEEEeeccccCc---chHHHHHHHhccCCc-cceEEEEeCCC
Confidence 99999999999999999999876 789999999999999 99999998643
No 5
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=99.14 E-value=3.7e-10 Score=78.07 Aligned_cols=67 Identities=18% Similarity=0.483 Sum_probs=55.5
Q ss_pred eeecCCCCCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 58 SRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 58 aRLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
..+..+ ...+||+.. ....+||+|||++++.|.+|.++++.... ..++++|+|.+|.|| ..|+.+.+
T Consensus 19 ~~~Dg~-~~t~W~~~~---~~~~~~i~idl~~~~~i~~i~i~~~~~~~--~~~~~~~~i~~s~dg-~~w~~~~~ 85 (129)
T PF00754_consen 19 NAFDGD-PSTAWCSNW---DDSPQWIQIDLGKPYTISGISIQFRNDGN--NGRPKSFKIEYSNDG-SNWTTVAS 85 (129)
T ss_dssp GGGSSS-TTSSEEESS---SSSTEEEEEEEEEEEEEEEEEEEEESSTT--TEEEEEEEEEEESSS-SSEEEEEE
T ss_pred heEeCC-CCCEEECCC---CCCCceEEEEeeeeEecceeeeccccccc--ceeeeeeeeeeeccc-cccccccc
Confidence 334433 458999974 57899999999999999999999987642 149999999999999 99999986
No 6
>KOG4276|consensus
Probab=91.42 E-value=0.5 Score=32.98 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=39.3
Q ss_pred CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEee
Q psy17120 77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWK 130 (137)
Q Consensus 77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~ 130 (137)
++...|.-|||+.....+.--..-+.+. +....+..+++-|.|| ++|..+.
T Consensus 4 d~k~awf~iDLG~~vip~~y~lrh~rgy--gRsalRnW~fQgS~Dg-ktWt~l~ 54 (113)
T KOG4276|consen 4 DDKNAWFAIDLGLEVIPTAYTLRHARGY--GRSALRNWKFQGSKDG-KTWTDLR 54 (113)
T ss_pred CCcceeEEEecCceEeeeeeeeeecccc--cHHHhhheeeeccccC-CcceeEE
Confidence 5678999999998877776655543332 2567788899999999 9999874
No 7
>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Probab=83.12 E-value=2 Score=31.81 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=30.8
Q ss_pred CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEEC
Q psy17120 77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120 (137)
Q Consensus 77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~ 120 (137)
.+..+|.+|||++.+.|..|.+-.|.+-- .+-+..|.|.-+.
T Consensus 48 ~e~~PWW~VDL~~~~~V~~V~I~NR~Dcc--~~rl~~~eI~IG~ 89 (151)
T smart00607 48 KRSNPWWRVDLLQYMTIHSVTITNRGDCC--GERITGARILIGN 89 (151)
T ss_pred CCCCCeEEEeCCCeEEeeEEEEecCCCCC--CccccceEEEECC
Confidence 46689999999999999999988775421 2345566666554
No 8
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=73.62 E-value=27 Score=27.18 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=43.7
Q ss_pred ceeecCCC-CCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCc
Q psy17120 57 HSRLRHDK-NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKW 126 (137)
Q Consensus 57 ~aRLn~~~-~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W 126 (137)
+-..+.+. ...-|.... +...|||-+.|.++..|+.|.. |...... ..=++.|+|.-+++. .+.
T Consensus 23 NIlvd~P~dqsSRWss~~---~~~~QyiiLkL~~paiV~sItF-GKy~K~H-vCNlK~fkv~gG~~~-~~m 87 (199)
T PF06588_consen 23 NILVDKPNDQSSRWSSSS---NSPPQYIILKLESPAIVKSITF-GKYEKPH-VCNLKKFKVYGGMDE-ENM 87 (199)
T ss_pred heeecCCCCccccccCCC---CCCCcEEEEEcCCCeEEEEEec-cccccCc-cccceeeEEeccCCH-HHH
Confidence 55554432 245699985 7889999999999999999855 4333211 233688888888775 443
No 9
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=61.99 E-value=50 Score=26.18 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=38.1
Q ss_pred CCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEee
Q psy17120 66 GGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWK 130 (137)
Q Consensus 66 ~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~ 130 (137)
..-|...........--|++||++...|+-|.+|-..... ..+| ++=|++| .+|.+|.
T Consensus 73 ~TwWQS~~~~~~~~~VtitLdL~k~fevtyi~l~F~s~RP--a~~i----~erSd~G-~tW~p~q 130 (238)
T smart00136 73 PTWWQSEPLSNGPQNVNLTLDLGKEFHVTYVILKFCSPRP--SLWI----LERSDFG-KTWQPWQ 130 (238)
T ss_pred CceecCCCcCCCCccEEEEEecCCEEEEEEEEEEecCCCC--ceEE----EeecCCC-CCCcEee
Confidence 3678777532122246788999999999999998653321 1232 3336778 9998875
No 10
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=59.42 E-value=41 Score=23.62 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=36.7
Q ss_pred CCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCC-CCcceEeEEEEEEECCCCcC-cEEe
Q psy17120 66 GGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNG-LGQEYAEEIVVDFWRPGFTK-WRRW 129 (137)
Q Consensus 66 ~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~-~~~~wVtsy~v~yS~dg~~~-W~~y 129 (137)
+..|+.. ....||-|.|.++..|++|.++=..... ....-.+.|.|.-+.+.... |..+
T Consensus 22 g~Cw~~~-----g~~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~~L 82 (135)
T PF07738_consen 22 GPCWAFE-----GSKGWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWVLL 82 (135)
T ss_dssp T-SEEEE-----TT-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--EEE
T ss_pred CccCccC-----CCceEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEecccccceeee
Confidence 4677654 4668999999999999999998433200 01345789999988887223 6554
No 11
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=47.66 E-value=66 Score=25.38 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=34.1
Q ss_pred CCcCCCCccCCCC--CCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEee
Q psy17120 66 GGAWCPKHMVGND--GHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWK 130 (137)
Q Consensus 66 ~~aW~~~~~~~~~--~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~ 130 (137)
..-|......... ..--|++||++...|+-|.++-..... ....|+=|.|+ .+|.+|+
T Consensus 69 ~TwWQS~~~~~g~~~~~VtitLdL~~~f~v~~v~l~F~spRP------~~miierS~D~-gtW~p~q 128 (237)
T PF00055_consen 69 STWWQSETLQNGVQYENVTITLDLGKEFEVTYVILQFCSPRP------AAMIIERSSDF-GTWQPWQ 128 (237)
T ss_dssp ---EEB--STTTTSTT-EEEEEEEEEEEEEEEEEEEESS---------SEEEEEEESST-TSEEEEE
T ss_pred CceecCCccCCCCcCcceEEEEcccceEEEEEEEEEEcCCCC------CeEEEEEccCC-CceeEeH
Confidence 4678776321111 245699999999999999998653321 23334448888 6999875
No 12
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=44.19 E-value=41 Score=24.52 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=28.6
Q ss_pred eecCCCCCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeec
Q psy17120 59 RLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQG 100 (137)
Q Consensus 59 RLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG 100 (137)
.|........|.... .....||.+.|.+...|..+.+-=
T Consensus 23 ~L~D~~~~tyWQSdG---~qgpH~I~l~f~~~v~i~~l~i~v 61 (134)
T cd08666 23 CLTDGDPDTYWESDG---SQGQHWIRLHMKKGTIIKKLLLTV 61 (134)
T ss_pred HhccCCCCccEecCC---CCCCeEEEEEECCCcEeeEEEEEe
Confidence 354444567899874 344799999999999998777653
No 13
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=40.72 E-value=52 Score=23.92 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=36.7
Q ss_pred ecCCCCCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceE-eEEEEEEECCC
Q psy17120 60 LRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYA-EEIVVDFWRPG 122 (137)
Q Consensus 60 Ln~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wV-tsy~v~yS~dg 122 (137)
|........|-... ...+||.|.|.+++.|..|.+-=..... +.|. +...|.-..+.
T Consensus 23 L~D~~~~TyWQSDg----~qPH~I~i~f~k~~~i~~l~i~vd~~~D--eSYtP~~I~v~~G~~~ 80 (139)
T cd08366 23 LRDDSLDTYWQSDG----PQPHLINIQFSKKTDISAVALYLDYKLD--ESYTPSKISIRAGTSP 80 (139)
T ss_pred hcCCCCCccCCCCC----CCCEEEEEEecCCcEEEEEEEEEccCCC--CCCCCEEEEEEEECCc
Confidence 43444457899874 4689999999999999988765433111 3453 45555555543
No 14
>cd02847 Chitobiase_C_term Chitobiase C-terminus domain. Chitobiase (AKA N-acetylglucosaminidase) digests the beta, 1-4 glycosidic bonds of the N-acetylglucosamine (NAG) oligomers found in chitin, an important structural element of fungal cell wall and arthropod exoskeletons. It is thought to proceed through an acid-base reaction mechanism, in which one protein carboxylate acts as catalytic acid, while the nucleophile is the polar acetamido group of the sugar in a substrate-assisted reaction with retention of the anomeric configuration. The C-terminus of chitobiase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chit
Probab=36.08 E-value=32 Score=22.63 Aligned_cols=21 Identities=10% Similarity=0.382 Sum_probs=16.7
Q ss_pred eEEEEEEECCCCcCcEEeecC
Q psy17120 112 EEIVVDFWRPGFTKWRRWKGR 132 (137)
Q Consensus 112 tsy~v~yS~dg~~~W~~y~~~ 132 (137)
....|.|+.||...|..|...
T Consensus 31 pg~~i~Yt~dgg~~w~~Y~~p 51 (78)
T cd02847 31 PGLTLQYSTDGGKNWNIYDAA 51 (78)
T ss_pred CCcEEEEEecCCccCeecccc
Confidence 346789999965899999874
No 15
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=28.95 E-value=61 Score=13.95 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=6.4
Q ss_pred EECCCCcCcEE
Q psy17120 118 FWRPGFTKWRR 128 (137)
Q Consensus 118 yS~dg~~~W~~ 128 (137)
+|.|+..+|+.
T Consensus 2 ~S~D~G~TW~~ 12 (12)
T PF02012_consen 2 YSTDGGKTWKK 12 (12)
T ss_dssp EESSTTSS-EE
T ss_pred EeCCCcccCcC
Confidence 56675588863
No 16
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=21.53 E-value=1.8e+02 Score=20.93 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=30.2
Q ss_pred eecCCCCCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeeccc
Q psy17120 59 RLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRF 102 (137)
Q Consensus 59 RLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~ 102 (137)
.|........|.... ...+.|+.+.|.+.+.|..+++.=..
T Consensus 18 ~L~D~~~~tyWQSdG---~qphh~i~l~f~k~v~i~~l~i~~~~ 58 (129)
T cd08159 18 RLTDGNYDTYWQSDG---SQGSHWIRLFMKKDVLIRVLAIFVDM 58 (129)
T ss_pred HhcCCCCCccCCCCC---CCCCEEEEEEEcCCcEEEEEEEEecC
Confidence 344444467899884 34468999999999999988887554
No 17
>PF13285 DUF4073: Domain of unknown function (DUF4073)
Probab=21.10 E-value=83 Score=23.47 Aligned_cols=20 Identities=10% Similarity=0.321 Sum_probs=15.3
Q ss_pred EEEEEEECCCCcCcEEeecC
Q psy17120 113 EIVVDFWRPGFTKWRRWKGR 132 (137)
Q Consensus 113 sy~v~yS~dg~~~W~~y~~~ 132 (137)
.=.++||.+|...|..|...
T Consensus 106 ~~~MEYsv~g~~~W~~y~p~ 125 (158)
T PF13285_consen 106 TEYMEYSVDGGNNWHTYDPA 125 (158)
T ss_pred ccEEEEeecCccccEeCCcC
Confidence 34578999995599999643
No 18
>KOG4350|consensus
Probab=20.23 E-value=45 Score=29.22 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=37.5
Q ss_pred CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
++...=+|||||+|..|.-|.+-- -+. +.-..+|.|..|+|. ..|..+.|
T Consensus 323 D~~~sgi~i~LG~p~iINhIrmll-Wdr---dsraysY~veVSmD~-~hW~rV~D 372 (620)
T KOG4350|consen 323 DENISGIQIDLGKPFIINHIRMLL-WDR---DSRAYSYQVEVSMDD-AHWNRVAD 372 (620)
T ss_pred cccceeEEEecCCchhhhhhhhhh-hcc---cccceEEEEEEecch-hhhHHhhh
Confidence 456677999999999998876543 122 344568999999998 99987654
Done!