Query psy17120
Match_columns 137
No_of_seqs 175 out of 1152
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 22:24:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wuh_A Discoidin domain recept 100.0 1E-32 3.4E-37 207.6 9.2 109 1-135 17-126 (178)
2 3hny_M Coagulation factor VIII 100.0 2E-32 6.8E-37 202.2 9.6 103 1-132 4-108 (159)
3 1czt_A Protein (coagulation fa 100.0 2.2E-31 7.5E-36 196.5 9.8 107 1-133 1-107 (160)
4 4ag4_A Epithelial discoidin do 100.0 4.4E-31 1.5E-35 216.9 9.8 110 1-136 5-114 (351)
5 4deq_A Neuropilin-1, vascular 100.0 1.6E-30 5.3E-35 201.6 9.7 102 1-133 5-107 (218)
6 3bn6_A Lactadherin; anticoagul 100.0 1.3E-30 4.4E-35 191.7 8.8 101 2-132 1-107 (158)
7 4gz9_A Neuropilin-1, A5 protei 99.9 4.4E-28 1.5E-32 209.1 10.2 104 2-136 257-361 (577)
8 2qqj_A Neuropilin-2; VEGF rece 99.9 1.4E-27 4.9E-32 192.7 10.2 102 1-133 6-109 (325)
9 2qqi_A Neuropilin-1; VEGF rece 99.9 3.7E-27 1.3E-31 190.0 9.2 101 1-132 6-107 (318)
10 2vm9_A Discoidin-2, discoidin 99.9 4.2E-25 1.4E-29 174.3 8.9 96 4-131 3-107 (257)
11 2qqj_A Neuropilin-2; VEGF rece 99.9 9.1E-25 3.1E-29 176.3 10.8 106 1-134 163-273 (325)
12 4gz9_A Neuropilin-1, A5 protei 99.9 4.9E-25 1.7E-29 190.0 9.5 104 2-134 413-516 (577)
13 2qqo_A Neuropilin-2; VEGF rece 99.9 3.2E-24 1.1E-28 180.0 10.5 105 2-134 293-402 (460)
14 2qqi_A Neuropilin-1; VEGF rece 99.9 3E-24 1E-28 173.0 9.8 104 1-133 162-265 (318)
15 2qqm_A Neuropilin-1; VEGF rece 99.9 1.5E-23 5.3E-28 175.3 10.4 104 1-133 294-397 (450)
16 1sdd_B Coagulation factor V; c 99.9 8.3E-24 2.8E-28 184.0 9.1 108 1-134 488-595 (647)
17 2qqk_A Neuropilin-2; VEGF rece 99.9 1.7E-23 5.6E-28 179.8 10.8 106 1-134 411-521 (579)
18 2wn3_A Discoidin-1 subunit A; 99.9 6.4E-23 2.2E-27 161.8 9.5 95 4-132 3-107 (254)
19 2qqk_A Neuropilin-2; VEGF rece 99.9 7.7E-23 2.6E-27 175.7 10.1 103 1-133 254-357 (579)
20 2qqo_A Neuropilin-2; VEGF rece 99.9 1.6E-22 5.3E-27 169.7 10.0 103 1-133 135-238 (460)
21 2r7e_B Coagulation factor VIII 99.9 3.8E-23 1.3E-27 183.8 6.2 105 1-132 611-715 (770)
22 1sdd_B Coagulation factor V; c 99.9 2E-22 6.8E-27 175.3 10.3 105 1-133 329-434 (647)
23 2qqm_A Neuropilin-1; VEGF rece 99.9 2.3E-22 7.8E-27 168.2 9.7 102 1-133 138-240 (450)
24 2r7e_B Coagulation factor VIII 99.8 3.8E-21 1.3E-25 170.9 6.5 99 1-132 458-556 (770)
25 2w1s_A Hyaluronoglucosaminidas 99.8 1.7E-19 6E-24 136.7 6.0 98 11-132 16-116 (192)
26 2v72_A CBM32, EXO-alpha-sialid 99.6 9.6E-15 3.3E-19 102.9 8.1 93 2-129 2-97 (143)
27 2jda_A Yecbm32; hypothetical p 99.1 8.7E-11 3E-15 82.8 7.1 79 16-131 11-89 (145)
28 2j1a_A Hyaluronidase, CBM32; p 98.9 1.2E-08 4.1E-13 71.6 10.7 59 67-131 42-100 (150)
29 4a41_A GH89_CBM32-5, alpha-N-a 98.9 1.4E-08 4.9E-13 73.9 10.4 63 66-131 56-118 (161)
30 4a4a_A Alpha-N-acetylglucosami 98.8 8.1E-09 2.8E-13 93.3 8.5 79 15-133 30-108 (914)
31 3eyp_A Putative alpha-L-fucosi 98.7 2.1E-08 7.2E-13 84.9 7.8 86 14-133 329-414 (469)
32 3ggl_A Putative chitobiase; X- 98.6 2.2E-07 7.5E-12 67.8 9.0 63 66-131 49-112 (169)
33 3f2z_A Uncharacterized protein 98.6 2.4E-07 8.2E-12 66.7 9.0 63 66-131 39-102 (159)
34 4a42_A GH89_CBM32-4, alpha-N-a 98.5 1.2E-07 4E-12 68.4 5.9 55 65-130 51-105 (149)
35 4a3z_A GH89_CBM32, alpha-N-ace 98.5 6.5E-07 2.2E-11 65.6 9.2 61 65-134 54-114 (161)
36 2v5d_A O-GLCNACASE NAGJ; famil 98.4 7E-07 2.4E-11 79.1 9.1 52 77-131 636-687 (737)
37 1k3i_A Galactose oxidase precu 98.4 8.2E-07 2.8E-11 76.2 8.0 62 66-129 53-117 (656)
38 3ues_A Alpha-1,3/4-fucosidase; 98.2 3.9E-06 1.3E-10 71.2 8.5 61 64-131 377-437 (478)
39 3lei_A Platelet aggregation fa 98.0 1.4E-05 4.8E-10 57.4 7.2 62 66-129 38-102 (153)
40 1w8o_A Bacterial sialidase; 3D 97.9 5.4E-05 1.9E-09 64.2 9.2 62 66-130 489-553 (601)
41 2zxq_A Endo-alpha-N-acetylgala 97.7 5.5E-06 1.9E-10 77.1 0.0 61 67-131 1260-1322(1376)
42 4gwi_A Lectinolysin, platelet 97.6 0.00015 5.2E-09 52.4 6.9 51 77-129 51-102 (153)
43 3hnm_A Putative chitobiase; PS 97.5 0.00069 2.4E-08 49.9 8.7 64 66-132 50-117 (172)
44 3cqo_A FBP32; F-lectin, fucole 97.4 0.00034 1.2E-08 54.8 6.6 59 66-129 180-246 (293)
45 1tvg_A LOC51668 protein; cell 97.3 0.0012 4.1E-08 47.9 8.5 52 65-129 45-98 (153)
46 1k12_A Lectin; beta barrel, pr 97.0 0.0011 3.9E-08 47.6 5.9 44 77-122 55-98 (158)
47 2j1v_A Fucolectin-related prot 97.0 0.0024 8.2E-08 45.7 7.3 44 77-122 57-100 (151)
48 3cqo_A FBP32; F-lectin, fucole 97.0 0.0016 5.5E-08 50.9 6.8 43 77-121 47-89 (293)
49 2yc2_A IFT25, intraflagellar t 96.9 0.0045 1.6E-07 43.7 7.8 54 65-130 37-91 (139)
50 2j22_A Fucolectin-related prot 96.7 0.0052 1.8E-07 43.9 6.8 49 77-128 54-104 (148)
51 2cho_A Glucosaminidase, hexosa 96.3 0.0017 5.7E-08 57.6 2.7 57 67-129 615-671 (716)
52 3gdb_A Endo-D, putative unchar 94.5 0.0065 2.2E-07 55.1 0.0 63 67-135 835-901 (937)
53 2yfu_A Carbohydrate binding fa 93.3 0.22 7.6E-06 35.9 6.2 68 58-133 26-97 (155)
54 3gza_A Putative alpha-L-fucosi 88.1 0.92 3.1E-05 37.9 6.0 48 79-131 354-401 (443)
55 4aqs_A Laminin subunit beta-1; 84.4 4.3 0.00015 33.9 8.4 54 67-130 93-147 (525)
56 2y38_A Laminin subunit alpha-5 59.7 18 0.00063 29.7 5.9 58 66-130 91-152 (403)
57 1jhj_A APC10; beta sandwich, j 55.5 39 0.0013 24.4 6.5 65 59-130 43-108 (171)
58 3zyj_B Netrin-G1; cell adhesio 52.7 20 0.00069 29.7 5.1 58 66-130 115-176 (426)
59 4aqt_A Laminin subunit gamma-1 52.5 30 0.001 28.0 6.0 58 66-130 84-145 (375)
60 3tbd_A Netrin-G2, laminet-2; l 52.0 44 0.0015 26.8 6.8 58 66-130 87-148 (338)
61 3nng_A Uncharacterized protein 32.2 1.3E+02 0.0045 21.1 6.2 54 77-131 58-111 (168)
62 4dxt_A SUN domain-containing p 26.4 60 0.002 23.8 3.5 53 65-122 79-135 (198)
63 1f53_A Yeast killer toxin-like 22.3 1.6E+02 0.0054 18.7 5.0 50 80-137 10-61 (84)
64 3o12_A Uncharacterized protein 20.3 64 0.0022 23.9 2.7 18 113-131 158-175 (221)
No 1
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A
Probab=99.98 E-value=1e-32 Score=207.58 Aligned_cols=109 Identities=40% Similarity=0.796 Sum_probs=92.7
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCC-
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDG- 79 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~- 79 (137)
.|..|||||+|.|||++|||||.+. ..+.|. +||||....+++|||+.....+.
T Consensus 17 ~c~~pLGmesg~I~d~~itASS~~~-~~~~p~------------------------~aRL~~~~~~~aW~a~~~~~~d~~ 71 (178)
T 2wuh_A 17 ICRYPLGMSGGQIPDEDITASSQWS-ESTAAK------------------------YGRLDSEEGDGAWCPEIPVEPDDL 71 (178)
T ss_dssp TSCEECSTTTSSSCGGGEEESCCSS-GGGSGG------------------------GCBTTCCSTTSSBCCSSCBBTTBC
T ss_pred CCCcCcccccCccCCcCEEEcCccC-cccChh------------------------hheecCCCCCCeecCCcCCCCCCC
Confidence 4999999999999999999999885 556676 99999876678999986211255
Q ss_pred CceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCCe
Q psy17120 80 HEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGK 135 (137)
Q Consensus 80 ~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g~ 135 (137)
.|||||||++++.|++|+|||+.+.+...+||++|+|+||.|| ..|+.|++.++.
T Consensus 72 ~qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~vt~Y~l~yS~Dg-~~W~~y~~~~~~ 126 (178)
T 2wuh_A 72 KEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDG-TRWISWRNRHGK 126 (178)
T ss_dssp CCCEEEEEEEEEEEEEEEEECCCGGGTCCCCCSEEEEEEESSS-SSCEECCCTTSC
T ss_pred CCEEEEecCCceEEeEEEEecccCCCCccceeEEEEEEEEcCC-CcEEEEecCCcc
Confidence 8999999999999999999998753223589999999999999 999999987654
No 2
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} SCOP: b.18.1.2 PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A
Probab=99.97 E-value=2e-32 Score=202.21 Aligned_cols=103 Identities=28% Similarity=0.477 Sum_probs=88.9
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCC--CCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDS--SSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGND 78 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~ 78 (137)
.|..|||||+|.|||+||||||.++. ..+.|+ +||||.....++|||.. ++
T Consensus 4 ~C~~pLGmesg~I~d~~itASS~~~~~~~~~~p~------------------------~aRL~~~~~~~aW~a~~---~d 56 (159)
T 3hny_M 4 SCSMPLGMESKAISDAQITASSYFTNMFATWSPS------------------------KARLHLQGRSNAWRPQV---NN 56 (159)
T ss_dssp CCCEECSTTTSSSCGGGEEESCCCBCSSCBCCGG------------------------GCBTTCCSSSCSBCCSS---CS
T ss_pred cCcccccccCCccChHHEEEecccCCCccccChh------------------------hhhhhcCCCCCccCCCC---CC
Confidence 49999999999999999999998751 134454 99999766678999996 67
Q ss_pred CCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120 79 GHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR 132 (137)
Q Consensus 79 ~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~ 132 (137)
..|||||||++++.|++|+|||+..... .+||++|+|+||.|| ..|+.|++.
T Consensus 57 ~~qwLqVDLg~~~~VtgV~tqG~~~~~~-~~~v~~y~l~yS~Dg-~~W~~~~~~ 108 (159)
T 3hny_M 57 PKEWLQVDFQKTMKVTGVTTQGVKSLLT-SMYVKEFLISSSQDG-HQWTLFFQN 108 (159)
T ss_dssp TTCCEEEEEEEEEEEEEEEEECEEETTE-EEEEEEEEEEEESSS-SSCEECEET
T ss_pred CCCeEEcccCCcEEEEEEEeecCCCCCc-cceEEEEEEEEEECC-CcEEEEecC
Confidence 8999999999999999999999864322 689999999999999 999999874
No 3
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A
Probab=99.97 E-value=2.2e-31 Score=196.50 Aligned_cols=107 Identities=26% Similarity=0.467 Sum_probs=89.0
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..|||||+|.|||++|||||.++ ..+.+ .|.|.+||||..+..++|||.. ++..
T Consensus 1 ~C~~pLGme~g~I~d~~itASS~~~-~~~~~--------------------~~~p~~aRL~~~~~~~~W~a~~---~~~~ 56 (160)
T 1czt_A 1 GCSTPLGMENGKIENKQITASSFKK-SWWGD--------------------YWEPFRARLNAQGRVNAWQAKA---NNNK 56 (160)
T ss_dssp CCCEECSTTTSCSCGGGEEESCCCB-CTTSC--------------------BCCGGGCBTTCCSSSCSEECSS---CSTT
T ss_pred CCCCCcccccCccccccEEEeeecc-cCCCc--------------------ccCcccceecCCCCCCcccCCC---CCCC
Confidence 4999999999999999999999864 11111 1344499999865568999996 6779
Q ss_pred ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN 133 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~ 133 (137)
|||||||++++.|++|+|||+...+. ++||++|+|+||.|| .+|+.|++..
T Consensus 57 qwLqVDLg~~~~Vt~v~tqG~~~~~~-~~~v~~y~l~yS~Dg-~~W~~~~~~~ 107 (160)
T 1czt_A 57 QWLEIDLLKIKKITAIITQGCKSLSS-EMYVKSYTIHYSEQG-VEWKPYRLKS 107 (160)
T ss_dssp CCEEEEEEEEEEEEEEEEECEEETTE-EEEEEEEEEEEESSS-SSCEECCCTT
T ss_pred cEEEEeCCCcEEEEEEEEeCcCCCCc-ccEEEEEEEEEECCC-CcEEEEEcCC
Confidence 99999999999999999999864222 589999999999999 9999998764
No 4
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=99.97 E-value=4.4e-31 Score=216.92 Aligned_cols=110 Identities=43% Similarity=0.780 Sum_probs=94.9
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..|||||+|.|||+||||||.+. ..+.|+ +||||.....++|||+....++..
T Consensus 5 ~C~~pLGMesG~IpDsqITASS~~~-~~~~p~------------------------~ARLn~~~~~gaW~a~~~~~~d~~ 59 (351)
T 4ag4_A 5 KCRYALGMQDRTIPDSDISASSSWS-DSTAAR------------------------HSRLESSDGDGAWCPAGSVFPKEE 59 (351)
T ss_dssp CCCEECSTTTSCSCGGGEEESCCSS-GGGCGG------------------------GCBTTCCTTTSSBCCSSCCCSSCC
T ss_pred cCcccccccCCCcChHheEEeCcCC-CccChh------------------------hhhcccCCCCccccccccccCCCC
Confidence 5999999999999999999999886 556666 999998766799999862223789
Q ss_pred ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCCee
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKE 136 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g~~ 136 (137)
|||||||++++.|++|+|||+...+...+||++|+|+||.|| ..|+.|++..+.+
T Consensus 60 qWLQVDLg~~~~VtgV~TQGr~~~g~~~~wVtsY~l~yS~DG-~~W~~y~d~~~~k 114 (351)
T 4ag4_A 60 EYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDG-RRWMGWKDRWGQE 114 (351)
T ss_dssp CCEEEEEEEEEEEEEEEEECBCGGGTCCBCCSEEEEEEESSS-SCEEECCCTTSCC
T ss_pred CEEEecCCCeEEEEEEEEecccCCCCccceEEEEEEEEEeCC-CcEEEEECCCccc
Confidence 999999999999999999998754323689999999999999 9999999876654
No 5
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A
Probab=99.97 E-value=1.6e-30 Score=201.59 Aligned_cols=102 Identities=31% Similarity=0.477 Sum_probs=89.3
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..|||||+|.|||++|||||.++ ..+.|+ +||||.. .++|+|.. ++..
T Consensus 5 ~C~~pLGmesg~I~D~qITASS~~~-~~~~P~------------------------~ARLn~~--~~aW~a~~---~d~~ 54 (218)
T 4deq_A 5 KCMEALGMESGEIHSDQITASSQYS-TNWSAE------------------------RSRLNYP--ENGWTPGE---DSYR 54 (218)
T ss_dssp CSCEECSTTTTCSCGGGEEESCCSC-GGGCGG------------------------GCBTTCS--SCCBCCSS---CSTT
T ss_pred cCCCCcccCCCCcCcccEEEeccCC-CCCChh------------------------HeEEcCC--CCeECCCC---CCCC
Confidence 4999999999999999999999886 456666 9999975 47999996 6789
Q ss_pred ceEEeecCeeEEEEEEEeecccCCCC-CcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNGL-GQEYAEEIVVDFWRPGFTKWRRWKGRN 133 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~~-~~~wVtsy~v~yS~dg~~~W~~y~~~~ 133 (137)
|||||||++++.|++|+|||+...+. ..+||++|+|+||.|| ..|..|++..
T Consensus 55 qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~~VtsY~l~yS~DG-~~W~~y~~~~ 107 (218)
T 4deq_A 55 EWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIKEGN 107 (218)
T ss_dssp CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEETT
T ss_pred CeEEEeCCCcEEEEEEEEEeccCCCCCccceEEEEEEEEEeCC-CceEEeecce
Confidence 99999999999999999999865321 1589999999999999 9999999853
No 6
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A
Probab=99.97 E-value=1.3e-30 Score=191.71 Aligned_cols=101 Identities=31% Similarity=0.514 Sum_probs=88.4
Q ss_pred CCCcccccCCCcCCCCeeeeccCCCC------CCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccC
Q psy17120 2 CGGALGLENGVIPDKDISASSAHDSS------SVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMV 75 (137)
Q Consensus 2 C~~~LGm~~g~I~d~~itASS~~~~~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~ 75 (137)
|..|||||+|.|||++|+|||.++ . .+.|+ +|||+.....++|||..
T Consensus 1 C~~pLGme~g~I~d~~itASS~~~-~~~~~~~~~~p~------------------------~arL~~~~~~~~W~~~~-- 53 (158)
T 3bn6_A 1 CTEPLGLKDNTIPNKQITASSYYK-TWGLSAFSWFPY------------------------YARLDNQGKFNAWTAQT-- 53 (158)
T ss_dssp CCEECSSTTSCSCGGGEEESCCCB-GGGCGGGBCCGG------------------------GCBTTCCSSSCSEECSS--
T ss_pred CCCCcccccCccChHhEEEecccc-cccccccccChh------------------------heEEcCCCCCCcccCCC--
Confidence 999999999999999999999875 3 45555 99999764568999996
Q ss_pred CCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120 76 GNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR 132 (137)
Q Consensus 76 ~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~ 132 (137)
++..|||||||++++.|++|+|||+...+. ..||++|+|+||.|| .+|+.|.+.
T Consensus 54 -~~~~qwlqVDLg~~~~vt~v~tqg~~~~~~-~~~v~~y~i~~S~Dg-~~W~~~~~~ 107 (158)
T 3bn6_A 54 -NSASEWLQIDLGSQKRVTGIITQGARDFGH-IQYVAAYRVAYGDDG-VTWTEYKDP 107 (158)
T ss_dssp -CCTTCCEEEEEEEEEEEEEEEEECEEETTE-EEEEEEEEEEEESSS-SSCEECCCT
T ss_pred -CCCCCEEEEeCCCceEEEEEEeeCCCCCCC-CceEEEEEEEEECCC-CceEEEEcC
Confidence 677999999999999999999999875322 479999999999999 999999985
No 7
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.95 E-value=4.4e-28 Score=209.06 Aligned_cols=104 Identities=32% Similarity=0.460 Sum_probs=90.8
Q ss_pred CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCc
Q psy17120 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHE 81 (137)
Q Consensus 2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~ 81 (137)
|..|||||+|.|||+||||||.++ ..+.|+ +||||.. ++||||+. ++..|
T Consensus 257 c~~~lgmesg~I~d~~itASS~~~-~~~~p~------------------------~aRLn~~--~~aW~~~~---~~~~q 306 (577)
T 4gz9_A 257 CMEALGMESGEIHSDQITASSQYG-TNWSVE------------------------RSRLNYP--ENGWTPGE---DSYKE 306 (577)
T ss_dssp SCEECSTTTSSSCGGGEEESCCSC-GGGCGG------------------------GCBTTCS--SCCBCCSS---CCTTC
T ss_pred ccccccccCCeecCcccccCCcCc-CCCCcc------------------------cccccCC--CCcccCCC---CCCCe
Confidence 889999999999999999999987 566676 9999965 47999996 78899
Q ss_pred eEEeecCeeEEEEEEEeecccCCCC-CcceEeEEEEEEECCCCcCcEEeecCCCee
Q psy17120 82 YIEVNLHDLHIVTGVQLQGRFGNGL-GQEYAEEIVVDFWRPGFTKWRRWKGRNGKE 136 (137)
Q Consensus 82 wLQVDL~~~~~ItgI~tQG~~~~~~-~~~wVtsy~v~yS~dg~~~W~~y~~~~g~~ 136 (137)
||||||++++.|++|+|||+..... ..+||++|+|+||.|| ..|..|++.++.+
T Consensus 307 wlqVDl~~~~~it~v~tQG~~~~~~~~~~~v~~y~v~~s~dg-~~w~~y~~~~~~~ 361 (577)
T 4gz9_A 307 WIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYRVDISSNG-EDWISLKEGNKAI 361 (577)
T ss_dssp CEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECBSSSSBC
T ss_pred EEEEcCCCEEEEEEEEccCCCCCCCCcceeEEEEEEEEEcCC-CcEEEEecCCCce
Confidence 9999999999999999999854321 2469999999999999 9999999876654
No 8
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=99.94 E-value=1.4e-27 Score=192.74 Aligned_cols=102 Identities=29% Similarity=0.546 Sum_probs=88.5
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCC-CCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSS-SVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDG 79 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~ 79 (137)
.|..|||||+|.|||++|+|||.+. . .+.|. +||||.. .++|||+. ++.
T Consensus 6 ~C~~pLGme~g~I~d~~itASS~~~-~~~~~p~------------------------~arl~~~--~~~W~~~~---~~~ 55 (325)
T 2qqj_A 6 QCNVPLGMESGRIANEQISASSTYS-DGRWTPQ------------------------QSRLHGD--DNGWTPNL---DSN 55 (325)
T ss_dssp CCCEECSTTTSCSCGGGEEESCCCT-TSSSCGG------------------------GCBTTCS--SCCBCCSS---CST
T ss_pred cccCCcccccCccCccCEEeccccC-CCccCcc------------------------ceeecCC--CCccccCc---CCc
Confidence 4999999999999999999999886 3 46676 9999975 47999996 678
Q ss_pred CceEEeecCeeEEEEEEEeecccCCCC-CcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120 80 HEYIEVNLHDLHIVTGVQLQGRFGNGL-GQEYAEEIVVDFWRPGFTKWRRWKGRN 133 (137)
Q Consensus 80 ~~wLQVDL~~~~~ItgI~tQG~~~~~~-~~~wVtsy~v~yS~dg~~~W~~y~~~~ 133 (137)
.|||||||++++.|++|+|||+.+.+. ..+||++|+|+||.|| ..|..|++..
T Consensus 56 ~qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~~~ 109 (325)
T 2qqj_A 56 KEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGK 109 (325)
T ss_dssp TCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEETT
T ss_pred CccEEEeccceEEEEEEEeeCCcCCCCCcceeEEEEEEEEEcCC-cEeEEeeCCC
Confidence 999999999999999999999864211 1579999999999999 9999998753
No 9
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=99.94 E-value=3.7e-27 Score=189.95 Aligned_cols=101 Identities=31% Similarity=0.467 Sum_probs=88.1
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..|||||+|.|||++|||||.+. ..+.|. +||||.. .++|||+. ++..
T Consensus 6 ~C~~pLGme~g~I~d~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~---~~~~ 55 (318)
T 2qqi_A 6 KCMEALGMESGEIHSDQITASSQYS-TNWSAE------------------------RSRLNYP--ENGWTPGE---DSYR 55 (318)
T ss_dssp SSCEECSTTTSCSCGGGEEESCCSC-GGGCGG------------------------GGBTTCS--SCCBCCSS---CCTT
T ss_pred cCCCCcCccCCCcchHHEEEeecCC-CcCChh------------------------hhhhcCC--CCeEcCCC---CCCC
Confidence 4999999999999999999999886 456666 9999975 47999996 6789
Q ss_pred ceEEeecCeeEEEEEEEeecccCCC-CCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNG-LGQEYAEEIVVDFWRPGFTKWRRWKGR 132 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~-~~~~wVtsy~v~yS~dg~~~W~~y~~~ 132 (137)
|||||||++++.|++|+|||+.... ...+||++|+|+||.|| ..|..|++.
T Consensus 56 qwlqVDLg~~~~v~~v~tqg~~~~~~~~~~~v~~y~i~~S~Dg-~~W~~~~~~ 107 (318)
T 2qqi_A 56 EWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIKEG 107 (318)
T ss_dssp CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEET
T ss_pred ceEEEccCCcEEEEeeeeeccccCCCCccEeEEEEEEEEecCC-CeEEEEeCC
Confidence 9999999999999999999986421 11589999999999999 999999875
No 10
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A*
Probab=99.92 E-value=4.2e-25 Score=174.35 Aligned_cols=96 Identities=13% Similarity=0.249 Sum_probs=83.3
Q ss_pred CcccccCC-CcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCC--------CCCcCCCCcc
Q psy17120 4 GALGLENG-VIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDK--------NGGAWCPKHM 74 (137)
Q Consensus 4 ~~LGm~~g-~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~--------~~~aW~~~~~ 74 (137)
.|+||.++ .|||++|+|||.++ ..+.|+ +||||... ..++|||+.
T Consensus 3 ~~~~~~~~~~I~d~~itASS~~~-~~~~p~------------------------~aRLn~~~~~~~~~~~~~~~W~a~~- 56 (257)
T 2vm9_A 3 VPAGSVSCLANALLNLRSSTDYN-ADHGVK------------------------NSILNFSNSKDASRFDGSESWSSSV- 56 (257)
T ss_dssp ---CCEETTTTTCSEEEESCCSS-GGGSGG------------------------GCBTTCCCCCCTTSCCCCSSEECSS-
T ss_pred CcccceecccccccCEEEcccCC-CCCCcC------------------------eEEeCCcccccccccCCCCeeeCCC-
Confidence 47899999 69999999999986 567777 99999852 358999996
Q ss_pred CCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 75 VGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 75 ~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
++..|||||||++++.|++|+|||+.+. ++||++|+|+||.|| ..|..|++
T Consensus 57 --~d~~qwLqVDLg~~~~Vt~V~tQG~~~~---~~~vt~Y~l~yS~Dg-~~W~~y~~ 107 (257)
T 2vm9_A 57 --LDKNQFIVAGSDSVKHFVAISTQGRGDH---DQWVTSYKLRYTLDN-VNWVEYNN 107 (257)
T ss_dssp --CSTTCCEEEEEEEEEEEEEEEEECCSSS---SCEEEEEEEEEESSS-SCEEEGGG
T ss_pred --CCCCcEEeecCCCcEEEEEEEEeCCccC---CceEEEEEEEEEcCC-CcEEEEcC
Confidence 6789999999999999999999999753 689999999999999 99999987
No 11
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=99.91 E-value=9.1e-25 Score=176.32 Aligned_cols=106 Identities=27% Similarity=0.507 Sum_probs=88.5
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..||||++|.|+|++|+|||.++ ..+.|. +|||+.. ..+|||.....++..
T Consensus 163 ~c~~plGm~sg~I~d~~itASS~~~-~~~~p~------------------------~arL~~~--~~~W~~~~~~~~~~~ 215 (325)
T 2qqj_A 163 PCSNMLGMLSGLIADSQISASSTQE-YLWSPS------------------------AARLVSS--RSGWFPRIPQAQPGE 215 (325)
T ss_dssp TTCEECSTTTSCSCGGGEEESCCCC--CCCGG------------------------GGBTTTC--SSCBCCSSSSCCTTT
T ss_pred eeccccccccccCCCcccccccccC-cccCcc------------------------hhhhccC--CCccccccccCCCcc
Confidence 3889999999999999999999876 456676 9999875 478999732235789
Q ss_pred ceEEeecCeeEEEEEEEeecccCCC-----CCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYAEEIVVDFWRPGFTKWRRWKGRNG 134 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~-----~~~~wVtsy~v~yS~dg~~~W~~y~~~~g 134 (137)
|||||||+.++.|++|+|||+.+.+ ....||++|+|+||.|| ..|+.|++.++
T Consensus 216 qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~vt~Y~l~yS~dg-~~W~~~~~~~~ 273 (325)
T 2qqj_A 216 EWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDWEYIQDPRT 273 (325)
T ss_dssp CCEEEEEEEEEEEEEEEEECBCCC----CCCCCBCEEEEEEEEESSS-SSCEECEETTT
T ss_pred ceeEeccCCceeEEEEEecCCCCCCCccccCcceeEEEEEEEEEeCC-CCeEEEecCCC
Confidence 9999999999999999999987310 12689999999999999 99999998654
No 12
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.91 E-value=4.9e-25 Score=190.04 Aligned_cols=104 Identities=26% Similarity=0.481 Sum_probs=88.3
Q ss_pred CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCc
Q psy17120 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHE 81 (137)
Q Consensus 2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~ 81 (137)
|..||||++|.|||++|+|||.++ ..+.|. +|||+... .+|++.....++..|
T Consensus 413 c~~plGm~~g~I~d~~itASS~~~-~~~~p~------------------------~aRL~~~~--~~w~~~~~~~~~~~q 465 (577)
T 4gz9_A 413 CSGMLGMVSGLISDSQITASNQAD-RNWMPE------------------------NIRLVTSR--TGWALPPSPHPYTNE 465 (577)
T ss_dssp SCEECSTTTSSSCGGGEEETTTTS-TTCCGG------------------------GGBTTTCS--SCEEECCCSSCCCSC
T ss_pred CcccccccccccCCCccccccccC-CCcChh------------------------heeecCCC--CCcccccCCCCCCCc
Confidence 889999999999999999999987 567777 99998763 566655322356789
Q ss_pred eEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120 82 YIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNG 134 (137)
Q Consensus 82 wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g 134 (137)
||||||++++.|++|+|||+..... .+||++|+|+||.|| ..|+.|++..+
T Consensus 466 wLqVDLg~~~~VtgV~tQG~~~~~~-~~~vtsY~l~yS~Dg-~~W~~~~~~~~ 516 (577)
T 4gz9_A 466 WLQVDLGDEKIVRGVIIQGGKHREN-KVFMRKFKIAYSNNG-SDWKTIMDDSK 516 (577)
T ss_dssp CEEEEEEEEEEEEEEEEECEESSSC-EECEEEEEEEEESSS-SSCEECBCTTS
T ss_pred eEEEECCCcEEEEEEEEeCCCCCCc-ceeEEEEEEEEECCC-CCeEEEEcCCC
Confidence 9999999999999999999875432 579999999999999 99999998655
No 13
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.91 E-value=3.2e-24 Score=180.04 Aligned_cols=105 Identities=28% Similarity=0.521 Sum_probs=88.4
Q ss_pred CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCc
Q psy17120 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHE 81 (137)
Q Consensus 2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~ 81 (137)
|..||||++|.|+|++|+|||.++ ..+.|. +|||+.. ..+|||+....++..|
T Consensus 293 c~~~lGm~sg~i~d~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~~~~~~~~q 345 (460)
T 2qqo_A 293 CSNMLGMLSGLIADSQISASSTQE-YLWSPS------------------------AARLVSS--RSGWFPRIPQAQPGEE 345 (460)
T ss_dssp TCEECSTTTSCSCGGGEEESCCCS-SSCCGG------------------------GGBTTTC--SSCBCCSSSSCCTTTC
T ss_pred ccceeccccCCCCccccccccCCC-cccCcc------------------------hhhhccC--CCCcccccccCCCccc
Confidence 889999999999999999999876 456666 9999875 4789997322357799
Q ss_pred eEEeecCeeEEEEEEEeecccCCC-----CCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120 82 YIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYAEEIVVDFWRPGFTKWRRWKGRNG 134 (137)
Q Consensus 82 wLQVDL~~~~~ItgI~tQG~~~~~-----~~~~wVtsy~v~yS~dg~~~W~~y~~~~g 134 (137)
||||||++++.|++|+|||+.+.+ ....||++|+|+||.|| ..|+.|++..+
T Consensus 346 wLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~yS~dg-~~W~~~~~~~~ 402 (460)
T 2qqo_A 346 WLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDWEYIQDPRT 402 (460)
T ss_dssp CEEEEEEEEEEEEEEEEECCCCC--CCCGGGCCCEEEEEEEEESSS-SSCEECEETTT
T ss_pred eEEEcCCCceEEEEEEecCCCCCCCccccccceeEEEEEEEEEeCC-CceEEEECCCC
Confidence 999999999999999999987310 12589999999999999 99999998655
No 14
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=99.90 E-value=3e-24 Score=172.99 Aligned_cols=104 Identities=22% Similarity=0.458 Sum_probs=87.0
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..||||++|.|+|++|+|||.++ ..+.|. +|||+.. ..+||+.....++..
T Consensus 162 ~c~~plGmesg~i~d~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~a~~~~~~ 214 (318)
T 2qqi_A 162 PCSGMLGMVSGLISDSQITSSNQGD-RNWMPE------------------------NIRLVTS--RSGWALPPAPHSYIN 214 (318)
T ss_dssp TTCEECSTTTSCSCGGGEEETTTTS-TTCCGG------------------------GGBTTCC--CCSCSBCCCTTCCSC
T ss_pred cccccccccCCcccccccccccccc-cccCch------------------------hhhhccc--CCceeCcccccCCcC
Confidence 3889999999999999999999876 566677 9999875 478996411125678
Q ss_pred ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN 133 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~ 133 (137)
|||||||++++.|++|+|||+.... ..+||++|+|+||.|| .+|+.|++..
T Consensus 215 qwLqVDLg~~~~Vt~V~tqg~~~~~-~~~~v~~Y~l~~S~dg-~~W~~~~~~~ 265 (318)
T 2qqi_A 215 EWLQIDLGEEKIVRGIIIQGGKHRE-NKVFMRKFKIGYSNNG-SDWKMIMDDS 265 (318)
T ss_dssp CCEEEEEEEEEEEEEEEEEECCCTT-CCCCCCCEEEEEESSS-SSCEECBCTT
T ss_pred cEEEEeCCCceEEEEEEEcCccCCC-CCeEEEEEEEEEECCC-CCEEEEEcCC
Confidence 9999999999999999999986532 2589999999999999 9999998753
No 15
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.89 E-value=1.5e-23 Score=175.27 Aligned_cols=104 Identities=22% Similarity=0.458 Sum_probs=87.0
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..||||++|.|+|++|+|||.++ ..+.|. +|||+.. ..+||+.....++..
T Consensus 294 ~c~~plgme~g~i~d~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~~~~~~~~ 346 (450)
T 2qqm_A 294 PCSGMLGMVSGLISDSQITSSNQGD-RNWMPE------------------------NIRLVTS--RSGWALPPAPHSYIN 346 (450)
T ss_dssp TTCEECSTTTSCSCGGGEEETTTTS-TTCCGG------------------------GGBTTTC--SSCEEECCCSSCCCS
T ss_pred ccccccccCCCCccccccccccccc-cccCch------------------------hhhcccc--CCcccccccccCCcC
Confidence 3889999999999999999999876 566676 9999875 478995311125678
Q ss_pred ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN 133 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~ 133 (137)
|||||||++++.|++|+|||+.... ..+||++|+|+||.|| .+|+.|++..
T Consensus 347 qwLqVDLg~~~~vt~v~tqg~~~~~-~~~~v~~Y~i~~S~dg-~~W~~~~~~~ 397 (450)
T 2qqm_A 347 EWLQIDLGEEKIVRGIIIQGGKHRE-NKVFMRKFKIGYSNNG-SDWKMIMDDS 397 (450)
T ss_dssp CCEEEEEEEEEEEEEEEEECCSCTT-TCCCEEEEEEEEESSS-SSCEECBCTT
T ss_pred ceEEEeCCCcEEEEEEEecCccCCC-CcEEEEEEEEEEECCC-CcEEEEEcCC
Confidence 9999999999999999999986532 1589999999999999 9999998753
No 16
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.89 E-value=8.3e-24 Score=184.00 Aligned_cols=108 Identities=25% Similarity=0.458 Sum_probs=89.6
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..||||++|.|+|++|+|||... ..++. .|.|.+|||+.++..++|||.. ++..
T Consensus 488 ~c~~plGmesg~I~d~~itASS~~~-~~~~~--------------------~~~p~~arL~~~g~~~~W~a~~---~~~~ 543 (647)
T 1sdd_B 488 GCSTPLGMESGKIENKQITASSFKK-SWWGN--------------------YWEPFLARLNAQGRVNAWQAKA---NNNN 543 (647)
T ss_dssp SCCSBCSTTTSSSCSTTEEESCCCE-ETTTE--------------------ECCGGGCBSSCCSSSCSEECSS---CSSC
T ss_pred ccccccCccCCccCCCceeeccccc-ccccc--------------------ccCccccccccCCCcccccCCC---CCCC
Confidence 3899999999999999999999753 11111 2445599999866668999985 6779
Q ss_pred ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNG 134 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g 134 (137)
|||||||++++.|++|+|||+...+. ..||++|+|+||.|| .+|+.|++..+
T Consensus 544 qwLqVDLg~~~~vt~v~tqg~~~~~~-~~~v~~y~l~~S~dg-~~W~~~~~~~~ 595 (647)
T 1sdd_B 544 QWLQIDLLKIKKITAIVTQGCKSLSS-EMYVKSYTIHYSDQG-TDWKPYREKSS 595 (647)
T ss_dssp CCEEEEEEEEEEEEEEEEECEEETTE-EEEEEEECEEEESSS-SCCEECCCSSC
T ss_pred cEEEEeCCCceEEEEEEeecCCCCCC-CcceEEEEEEEECCC-CcEEEEEcCCC
Confidence 99999999999999999999864322 589999999999999 99999998654
No 17
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.89 E-value=1.7e-23 Score=179.85 Aligned_cols=106 Identities=27% Similarity=0.507 Sum_probs=87.1
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..||||++|.|+|++|+|||.++ ..+.|. +|||+.. ..+|+|+....++..
T Consensus 411 ~c~~~lGm~~g~i~d~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~~~~~~~~ 463 (579)
T 2qqk_A 411 PCSNMLGMLSGLIADSQISASSTQE-YLWSPS------------------------AARLVSS--RSGWFPRIPQAQPGE 463 (579)
T ss_dssp SSCEECSTTTSSSCGGGEEESCCCC---CCGG------------------------GGBTTTC--SSCBCCSSTTCCTTT
T ss_pred cceeccccccCcccccceecccCCC-cccCch------------------------hheeccc--CcCCcccccccCCcc
Confidence 3889999999999999999999876 456666 9999875 468999732235779
Q ss_pred ceEEeecCeeEEEEEEEeecccCCC-----CCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYAEEIVVDFWRPGFTKWRRWKGRNG 134 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~-----~~~~wVtsy~v~yS~dg~~~W~~y~~~~g 134 (137)
|||||||++++.|++|+|||+.+.+ ....||++|+|+||.|| ..|+.|++..+
T Consensus 464 qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~~S~dg-~~W~~~~~~~~ 521 (579)
T 2qqk_A 464 EWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDWEYIQDPRT 521 (579)
T ss_dssp CCEEEEEEEEEEEEEEEEECBC---------CCBCEEEEEEEEESSS-SCCEECBCTTT
T ss_pred ceEEEecCCceEEEEEEeCCCCCCCCccccccceeeEEEEEEEEcCC-CceeEEEcCCC
Confidence 9999999999999999999987310 12589999999999999 99999998654
No 18
>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A*
Probab=99.88 E-value=6.4e-23 Score=161.78 Aligned_cols=95 Identities=18% Similarity=0.270 Sum_probs=83.8
Q ss_pred CcccccCC-CcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCC-------CCCcCCCCccC
Q psy17120 4 GALGLENG-VIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDK-------NGGAWCPKHMV 75 (137)
Q Consensus 4 ~~LGm~~g-~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~-------~~~aW~~~~~~ 75 (137)
.|.||..+ .|||++|+|||.++ ..+.|+ +||||... ..++|||+.
T Consensus 3 ~~~g~v~~~~i~d~~itASS~~~-~~~~p~------------------------~aRLn~~~~~~~~~~~~~aW~a~~-- 55 (254)
T 2wn3_A 3 STQGLVQLLANAQCHLRTSTNYN-GVHTQF------------------------NSALNYKNNGTNTIDGSEAWCSSI-- 55 (254)
T ss_dssp GGTTSEETTTTTCSEEEESCCSS-TTSSGG------------------------GCBTTCCCCTTCGGGCCSSEECSS--
T ss_pred CcccceeccccCCCCEEEcccCC-CCCCcc------------------------eEEeCCcccccccCCCCCeeeCCC--
Confidence 36799998 59999999999986 677787 99999753 368999996
Q ss_pred CCCCCceEEeecCe--eEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120 76 GNDGHEYIEVNLHD--LHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR 132 (137)
Q Consensus 76 ~~~~~~wLQVDL~~--~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~ 132 (137)
++..||| ||++ ++.|++|+|||+... ++||++|+|+||.|| ..|..|++.
T Consensus 56 -~d~~qwL--DLg~~~~~~VtgV~tQG~~~~---~~~VtsY~l~yS~dg-~~W~~y~~~ 107 (254)
T 2wn3_A 56 -VDTNQYI--VAGCEVPRTFMCVALQGRGDA---DQWVTSYKIRYSLDN-VSWFEYRNG 107 (254)
T ss_dssp -CSTTCCE--EEEEEEEEEEEEEEEECCSSS---SCEEEEEEEEEESSS-SSCEEGGGG
T ss_pred -CCchheE--EcCCCeEEEEEEEEEeCCCCC---CCceEEEEEEEECCC-CcEEEecCC
Confidence 6889999 9999 999999999999753 689999999999999 999999873
No 19
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.88 E-value=7.7e-23 Score=175.68 Aligned_cols=103 Identities=29% Similarity=0.542 Sum_probs=87.9
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..||||++|.|+|.+|+|||.+....+.|. +||||.. ..+|||.. ++..
T Consensus 254 ~C~~~lg~~~g~I~d~qitaSS~~~~~~~~p~------------------------~arl~~~--~~~W~~~~---~~~~ 304 (579)
T 2qqk_A 254 QCNVPLGMESGRIANEQISASSTYSDGRWTPQ------------------------QSRLHGD--DNGWTPNL---DSNK 304 (579)
T ss_dssp CSCEECSTTTSSSCGGGEEESCCCTTSCSCGG------------------------GCBTTCS--SCCBCCSS---CSTT
T ss_pred eEeccccccccccccccceeeeeecccccCcc------------------------hhhccCC--CceecCCC---CCCC
Confidence 49999999999999999999998751145555 9999975 47999996 6789
Q ss_pred ceEEeecCeeEEEEEEEeecccCCCC-CcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNGL-GQEYAEEIVVDFWRPGFTKWRRWKGRN 133 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~~-~~~wVtsy~v~yS~dg~~~W~~y~~~~ 133 (137)
|||||||++++.|++|+|||+...+. ...||++|+|+||.|| ..|..|++..
T Consensus 305 qwlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~~~ 357 (579)
T 2qqk_A 305 EYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGK 357 (579)
T ss_dssp CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEETT
T ss_pred ceEEeecceeEEEEEEEccCCccCCCCcccceEEEEEEEECCC-CceeeeecCC
Confidence 99999999999999999999864211 1579999999999999 9999999754
No 20
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=169.75 Aligned_cols=103 Identities=29% Similarity=0.542 Sum_probs=87.2
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..+|||++|.|+|++|+|||.+....+.|. +||||.. ..+|||.. ++..
T Consensus 135 ~C~~~lg~~~G~I~d~~itaSS~~~~~~~~p~------------------------~arl~~~--~~~W~~~~---~~~~ 185 (460)
T 2qqo_A 135 QCNVPLGMESGRIANEQISASSTYSDGRWTPQ------------------------QSRLHGD--DNGWTPNL---DSNK 185 (460)
T ss_dssp -CCEECSTTTSCSCGGGEEESCCCTTSSSCGG------------------------GCBTTCS--SCCBCCSS---CSTT
T ss_pred ecccccccccccccccceeeeeeccCcccChh------------------------hhhhcCC--CceeeCCC---CCcc
Confidence 39999999999999999999998751135555 9999975 47999996 6789
Q ss_pred ceEEeecCeeEEEEEEEeecccCCC-CCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNG-LGQEYAEEIVVDFWRPGFTKWRRWKGRN 133 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~-~~~~wVtsy~v~yS~dg~~~W~~y~~~~ 133 (137)
|||||||+.++.|++|+|||+...+ ....||++|+|+||.|| ..|..|++..
T Consensus 186 ~wlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~~~ 238 (460)
T 2qqo_A 186 EYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGK 238 (460)
T ss_dssp CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECEETT
T ss_pred eeEeccCCceEEEEEEEeecCCCCCCCccceEEEEEEEEEcCC-CCeeEecCCC
Confidence 9999999999999999999986431 11579999999999999 9999998753
No 21
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.87 E-value=3.8e-23 Score=183.78 Aligned_cols=105 Identities=27% Similarity=0.419 Sum_probs=89.0
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..||||++|.|+|++|+|||.++ ... ..|.|.+|||+..+..++|||.. ++..
T Consensus 611 ~c~~PLGmesg~I~d~qitASS~~~-~~~---------------------~~~~P~~ARL~~~~~~~aW~a~~---~d~~ 665 (770)
T 2r7e_B 611 SCSMPLGMESKAISDAQITASSYFT-NMF---------------------ATWSPSKARLHLQGRSNAWRPQV---NNPK 665 (770)
T ss_dssp TCCCCCSTTSSCSCTTSCCBSCCCB-CSS---------------------CBCCGGGCBTTCCSTTCSBCCSS---CCSS
T ss_pred ccccCcccccccccccceEEccccC-CCc---------------------ccccccceeecCCCCCceEECCC---CCCC
Confidence 3889999999999999999999875 211 12445599999876678999996 6789
Q ss_pred ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR 132 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~ 132 (137)
|||||||++++.|++|+|||+.+... ..||++|+|.||.|| .+|..|++.
T Consensus 666 qwLQVDLg~~~~VtgV~tQG~~~~~~-~~~VtsY~l~yS~DG-~~W~~y~~~ 715 (770)
T 2r7e_B 666 EWLQVDFQKTMKVTGVTTQGVKSLLT-SMYVKEFLISSSQDG-HQWTLFFQN 715 (770)
T ss_dssp CCEEECCSSCCCBCCEEECCCCCTTC-CCCCCEEEECCBSST-TCBCCCBCS
T ss_pred ceEEEccccceEEEEEEEeCCcCcCc-ccceEEEEEEEEcCC-CcEEEEecC
Confidence 99999999999999999999875322 689999999999999 999999864
No 22
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.87 E-value=2e-22 Score=175.35 Aligned_cols=105 Identities=27% Similarity=0.451 Sum_probs=88.2
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCC-CCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVG-NDG 79 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~-~~~ 79 (137)
.|..||||++|.|+|++|+|||... .+.|+ +||||.....++|||+.... .+.
T Consensus 329 ~c~~Plg~~~g~I~~~~i~asS~~~--~~~p~------------------------~arl~~~~~~~~W~~~~~~~~~~~ 382 (647)
T 1sdd_B 329 ECKMPMGLSTGLIADSQIQASEFWG--YWEPK------------------------LARLNNGGSYNAWIAEKLSTEFNP 382 (647)
T ss_dssp TCCEECSTTTSCSCGGGEEESCCST--TCCGG------------------------GCBTTCCSSSCSEECSCCCCSSCC
T ss_pred cccccccccCCcccccccccccccc--ccccc------------------------eeeecCCCCcccccCCCCcccccc
Confidence 4999999999999999999999864 56777 99999865567999986210 023
Q ss_pred CceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120 80 HEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN 133 (137)
Q Consensus 80 ~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~ 133 (137)
.|||||||++++.|++|+|||+.... ..+||++|+|+||.|| ..|..|++..
T Consensus 383 ~qwlqVDLg~~~~vt~v~tqg~~~~~-~~~~v~~y~i~yS~Dg-~~W~~~~~~~ 434 (647)
T 1sdd_B 383 EPWIQVDMQKEVLLTGIQTQGAKHYL-KPYYTTEFCVAYSLDR-KNWRIFKGNS 434 (647)
T ss_dssp CSCEEEEEEEEEEEEEEEEECEESSS-SEEEEEEEEEEEESSS-SSCEECCSSC
T ss_pred cceEEeccCCeEEEEEEEEcCCCCCC-CccEEEEEEEEEEcCC-CceEEecccC
Confidence 79999999999999999999986421 2689999999999999 9999998754
No 23
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.87 E-value=2.3e-22 Score=168.17 Aligned_cols=102 Identities=31% Similarity=0.474 Sum_probs=87.8
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..+|||++|.|+|.+|+|||.+. ..+.|. +||||.. .++|||+. ++..
T Consensus 138 ~C~~~lg~~~g~I~~~~itASS~~~-~~~~p~------------------------~arl~~~--~~~W~~~~---~~~~ 187 (450)
T 2qqm_A 138 KCMEALGMESGEIHSDQITASSQYS-TNWSAE------------------------RSRLNYP--ENGWTPGE---DSYR 187 (450)
T ss_dssp CSCEECSTTTSCSCGGGEEESCCSC-GGGCGG------------------------GGBTTCS--SCCBCCSS---CSTT
T ss_pred ccCcccccccccccccccccccccc-ccchhh------------------------ccccccC--CCCccCCC---CCCC
Confidence 4999999999999999999999876 456666 9999975 47899985 6779
Q ss_pred ceEEeecCeeEEEEEEEeecccCCC-CCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNG-LGQEYAEEIVVDFWRPGFTKWRRWKGRN 133 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~-~~~~wVtsy~v~yS~dg~~~W~~y~~~~ 133 (137)
|||||||++++.|++|+|||+.... ...+||++|+|+||.|| ..|..|++..
T Consensus 188 qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~~~~ 240 (450)
T 2qqm_A 188 EWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIKEGN 240 (450)
T ss_dssp CCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSEEECBSSS
T ss_pred ceEEEcccceEEEEEEeccCCCCCCCCcceeEEEEEEEEeCCC-CceeEEeCCC
Confidence 9999999999999999999986521 11479999999999999 9999998753
No 24
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.83 E-value=3.8e-21 Score=170.92 Aligned_cols=99 Identities=27% Similarity=0.505 Sum_probs=86.8
Q ss_pred CCCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCC
Q psy17120 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGH 80 (137)
Q Consensus 1 ~C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~ 80 (137)
.|..||||++|.|||.+|+|||.+. .+.|. +||||..+..++||+. +..
T Consensus 458 ~C~~plgm~~g~I~d~~ItASS~~~--~~~p~------------------------~arL~~~~~~~aW~~~-----~~~ 506 (770)
T 2r7e_B 458 KCQTPLGMASGHIRDFQITASGQYG--QWAPK------------------------LARLHYSGSINAWSTK-----EPF 506 (770)
T ss_dssp SCCCBCCSSSSSSCTTSCCCSCCSS--SCCTT------------------------CCSSCCSTTCSSEECC-----SSC
T ss_pred ccccccccccccccceEEeeccccC--ccchh------------------------eEEECCCCCccccccC-----CCC
Confidence 4999999999999999999999885 46777 9999987556899984 468
Q ss_pred ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120 81 EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR 132 (137)
Q Consensus 81 ~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~ 132 (137)
|||||||++++.|++|+|||+.... ..+||++|+|+||.|| ..|..|++.
T Consensus 507 qwLQVDLg~~~~Vt~V~tQG~~~~~-~~~~v~sY~I~yS~DG-~~W~~y~~~ 556 (770)
T 2r7e_B 507 SWIKVDLLAPMIIHGIKTQGARQKF-SSLYISQFIIMYSLDG-KKWQTYRGN 556 (770)
T ss_dssp CCEEEEEEEEEEECBCCCCCEECSS-SEECCSEEEEEEESSS-SSCBCCCCS
T ss_pred ceEEecCCceEEEEEEEEcccCcCC-cccceEEEEEEEecCC-CccEEeecc
Confidence 9999999999999999999986421 2589999999999999 999999864
No 25
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Probab=99.78 E-value=1.7e-19 Score=136.70 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=69.9
Q ss_pred CCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCC-CCCcCCCCcc-CCCCCCceEEeecC
Q psy17120 11 GVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDK-NGGAWCPKHM-VGNDGHEYIEVNLH 88 (137)
Q Consensus 11 g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~-~~~aW~~~~~-~~~~~~~wLQVDL~ 88 (137)
+.|+|+||+||+... ..+. .|.|..|||+... ..++|||..+ ..++..|||||||+
T Consensus 16 ~~~~~~~~~assi~s-s~w~---------------------~~~p~~arL~dg~~~t~aW~a~~~~~~~~~~qwLQVDLg 73 (192)
T 2w1s_A 16 PRGSHMASNPSLIRS-ESWQ---------------------VYEGNEANLLDGDDNTGVWYKTLNGDTSLAGEFIGLDLG 73 (192)
T ss_dssp --------CCEEEEC-TTCE---------------------EEEECGGGGSSSCTTCCEEEECHHHHCBCTTCEEEEEEE
T ss_pred ccCccccccceEEec-cccc---------------------ccCChHHheeCCCCCcCEEeCCcccccCCCCceEEEECC
Confidence 478999999999865 3221 2455599999743 2359999310 01577999999999
Q ss_pred eeEEEEEE-EeecccCCCCCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120 89 DLHIVTGV-QLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR 132 (137)
Q Consensus 89 ~~~~ItgI-~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~ 132 (137)
+++.|++| +|||+...+. ..||++|+|+||.|| ..|..|.+.
T Consensus 74 ~~~~VtgV~~tQG~~~~~~-~~~vt~Y~l~yS~DG-~~W~~~~~~ 116 (192)
T 2w1s_A 74 KEIKLDGIRFVIGKNGGGS-SDKWNKFKLEYSLDN-ESWTTIKEY 116 (192)
T ss_dssp EEEEEEEEEEEECCSSTTT-TCCCSEEEEEEESSS-SSCEEEEEE
T ss_pred CeEEEEEEEEEcCCCCCCC-CCeEEEEEEEEEcCC-CCeEEEecC
Confidence 99999999 9999875322 479999999999999 999999875
No 26
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens}
Probab=99.56 E-value=9.6e-15 Score=102.86 Aligned_cols=93 Identities=16% Similarity=0.267 Sum_probs=68.9
Q ss_pred CCCcccccCCCcCCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCC---CCcCCCCccCCCC
Q psy17120 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKN---GGAWCPKHMVGND 78 (137)
Q Consensus 2 C~~~LGm~~g~I~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~---~~aW~~~~~~~~~ 78 (137)
|..|| +++.|||++|+||+... ....|. .++|+.+.. ..+||+.. .
T Consensus 2 ~~~P~--~~~~i~~~~~tasss~~-~~~~~~------------------------~~~~Dg~~~t~w~~~w~~~~----~ 50 (143)
T 2v72_A 2 MASAI--IETAIPQSEMTASATSE-EGQDPA------------------------SSAIDGNINTMWHTKWNGSD----A 50 (143)
T ss_dssp -------CCCBCCGGGCEEEESSC-BTTBCG------------------------GGGSSSCTTCCEECCTTSCS----C
T ss_pred ccccc--cccccChhhcEEEEecc-cCCChH------------------------HhccCCCCCCceecCCCCCC----C
Confidence 66777 68999999999999764 333444 677876532 35788763 3
Q ss_pred CCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEe
Q psy17120 79 GHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRW 129 (137)
Q Consensus 79 ~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y 129 (137)
..+||||||++++.|++|.+|++... ...|++.|+|.||.|| .. +.+
T Consensus 51 ~~~~l~vDLg~~~~i~~v~~~~~~~~--~~~~~~~~~i~~S~Dg-~~-~~v 97 (143)
T 2v72_A 51 LPQSLSVNLGKARKVSSIAITPRTSG--NNGFITKYEIHAINNG-VE-TLV 97 (143)
T ss_dssp SCEEEEEEEEEEEEEEEEEEECCSSC--CTTCEEEEEEEEEETT-EE-EEE
T ss_pred CCEEEEEECCCCeEEeEEEEEecccC--CCCCEEEEEEEEEcCC-Cc-cEE
Confidence 68999999999999999999998642 1579999999999999 66 654
No 27
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A
Probab=99.15 E-value=8.7e-11 Score=82.81 Aligned_cols=79 Identities=10% Similarity=0.188 Sum_probs=62.3
Q ss_pred CCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCceEEeecCeeEEEEE
Q psy17120 16 KDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTG 95 (137)
Q Consensus 16 ~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~Itg 95 (137)
..++|||......+.|. +++.... ...|++.. + +||||||++++.|++
T Consensus 11 ~~vtASs~~~~~~~~~~------------------------~a~Dg~~--~t~W~~~~----~--~~l~vDLg~~~~v~~ 58 (145)
T 2jda_A 11 VAVTASGYDSEKGHVPA------------------------NIADGDV--KTRWAASG----E--SWVQLELDKEQSIEN 58 (145)
T ss_dssp EEEEESCCBTTTTBCGG------------------------GGGSSCT--TCCEEEES----S--EEEEEEEEEEEEEEE
T ss_pred EEEEEeecccCCCCCch------------------------hcccCCC--CCeECCCC----C--eeEEEECCCceEEEE
Confidence 56899997621345555 6654432 47899973 3 999999999999999
Q ss_pred EEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 96 VQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 96 I~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
|.+|++.. ..+++.|+|.+|.|| ..|..+.+
T Consensus 59 v~i~~~~~----~~~~~~~~i~~S~Dg-~~w~~~~~ 89 (145)
T 2jda_A 59 ILIVPFKP----TERKLKFSIFYSNDG-KNWQPLAE 89 (145)
T ss_dssp EEEEESST----TTCCEEEEEEEESSS-SSCEEEEE
T ss_pred EEEEeccC----CCceEEEEEEEeCCC-CceEEeee
Confidence 99998743 469999999999999 99999865
No 28
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*
Probab=98.93 E-value=1.2e-08 Score=71.56 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=48.7
Q ss_pred CcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 67 GAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 67 ~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
.+||+.. .+..+||+|||++++.|++|.+|++.+. ...+++.|+|.+|.|| ..|..+..
T Consensus 42 s~~~~~~---~~~~~~l~iDLg~~~~i~~v~~~~~~~~--~~~~~~~~~i~~S~Dg-~~w~~v~~ 100 (150)
T 2j1a_A 42 SKWSSPA---HEGPHHLTLELDNVYEINKVKYAPRQDS--KNGRITGYKVSVSLDG-ENFTEVKT 100 (150)
T ss_dssp CCCSSSC---CCSCCEEEEEEEEEEEEEEEEEECCSSC--CTTEEEEEEEEEESSS-SSEEEEEE
T ss_pred ccccCCC---CCCCeEEEEECCCCeEEeEEEEeecCCC--CCCCEEEEEEEEEcCC-CceEEEEE
Confidence 3677642 4568999999999999999999998542 1479999999999999 99998753
No 29
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Probab=98.89 E-value=1.4e-08 Score=73.87 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=49.7
Q ss_pred CCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 66 GGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 66 ~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
...|.+.........+||+|||++++.|++|.++++.+.. ..+++.|+|.+|.|| .+|..+.+
T Consensus 56 ~T~W~s~~~~~~~~p~~i~iDLg~~~~I~~v~~~~r~~~~--~~~~~~y~I~~S~DG-~~W~~v~~ 118 (161)
T 4a41_A 56 NTIWHTKYNPVEELPQSITLELGGSYEINKFTYLPRSGAK--NGNITKYELHVSEDG-NNFRKISE 118 (161)
T ss_dssp TCCEECCTTTTCCSCEEEEEEEEEEEEEEEEEEECCSSCC--TTCEEEEEEEEESSS-SCEEEEEE
T ss_pred CCeEEeCCCCCCCCCEEEEEEcCCCEEEeEEEEEecCCCC--CCcEEEEEEEEECCC-CceEEeee
Confidence 4567765311123578999999999999999999876432 478999999999999 99998864
No 30
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A
Probab=98.82 E-value=8.1e-09 Score=93.26 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=63.7
Q ss_pred CCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCceEEeecCeeEEEE
Q psy17120 15 DKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVT 94 (137)
Q Consensus 15 d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~It 94 (137)
...++|||... .+.|. +|+-.. ..+.|++. +..+||||||++++.|+
T Consensus 30 gk~vTASS~~~--g~~p~------------------------nAvDGn--~~T~WsS~-----~~~qWLqVDLG~~~~V~ 76 (914)
T 4a4a_A 30 GVTVTAKGNTE--GNTAD------------------------LAIDGD--LSTYWESS-----NDYKWIEVDLGGIYELS 76 (914)
T ss_dssp SCEEEESCCCT--TCCGG------------------------GGSSSC--TTCCEECC-----SSCCEEEEEEEEEEEEE
T ss_pred CCceEEeccCC--CCcHH------------------------HeECCC--CCCeEecC-----CCCceEEEECCCeEEEE
Confidence 46799999864 46676 666433 35889997 34699999999999999
Q ss_pred EEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120 95 GVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN 133 (137)
Q Consensus 95 gI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~ 133 (137)
+|++|+. ..++++|+|++|.|| .+|+.+.+..
T Consensus 77 ~V~l~~~------~~~v~~Y~Ie~S~DG-~~Wt~v~~~t 108 (914)
T 4a4a_A 77 KIEIFNK------DEAVYKYNIYASEDG-ENFNKIAYKN 108 (914)
T ss_dssp EEEEECS------SSSCEEEEEEEESSS-SCCEEEEEEC
T ss_pred EEEEEec------CCceEEEEEEEEcCC-CCeEEEEEcc
Confidence 9999972 256899999999999 9999997643
No 31
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=2.1e-08 Score=84.90 Aligned_cols=86 Identities=9% Similarity=0.136 Sum_probs=67.6
Q ss_pred CCCCeeeeccCCCCCCCCCCCCcceeEEEeeecccccccccccceeecCCCCCCcCCCCccCCCCCCceEEeecCeeEEE
Q psy17120 14 PDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIV 93 (137)
Q Consensus 14 ~d~~itASS~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~aRLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~I 93 (137)
....++|||... ..+.|. ++ ......+.|++.. ++..+||||||+++..|
T Consensus 329 ~~~~vtASS~~~-~~~~~~------------------------~a--~Dgd~~TyW~a~~---~~~~~wl~vDLg~~~~v 378 (469)
T 3eyp_A 329 RGAKVKATNVRG-AKYSPE------------------------KM--LDNEKNTYFAGKD---GEVKADIIFTLPKTIEF 378 (469)
T ss_dssp TTCEEEESSCCC-GGGCGG------------------------GG--GSCCSSCCEECCT---TCCCEEEEEEEEEEEEE
T ss_pred cCCceEEeeccC-CCCChh------------------------hc--ccCCCCceEeCCC---CCCCcEEEEECCCCcEE
Confidence 346789999765 345554 43 3334468999985 66789999999999999
Q ss_pred EEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCC
Q psy17120 94 TGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRN 133 (137)
Q Consensus 94 tgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~ 133 (137)
..|++|..... .++|++|+|.+|.|| ..|+.+.+.+
T Consensus 379 n~V~lqe~i~~---gqrv~~y~Ve~s~DG-~~W~~v~~gt 414 (469)
T 3eyp_A 379 DCLMIEEVIEL---GHRTTKWSVEYTVDG-KNWITIPEAT 414 (469)
T ss_dssp EEEEEEECGGG---CSCEEEEEEEEESSS-SCCEECGGGS
T ss_pred eEEEEeecccC---CCCeEEEEEEEEcCC-CceEEEEecc
Confidence 99999987543 479999999999999 9999987543
No 32
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=2.2e-07 Score=67.77 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=49.4
Q ss_pred CCcCCCCccC-CCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 66 GGAWCPKHMV-GNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 66 ~~aW~~~~~~-~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
...|.+.-.. .....+||+|||++++.|++|.++++.+.. ..+++.|+|.+|.|| ..|..+.+
T Consensus 49 ~T~W~s~~~~~~~~~p~wi~vDLg~~~~i~~v~~~~r~~~~--~~~~~~y~I~~S~Dg-~~W~~v~~ 112 (169)
T 3ggl_A 49 ETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELLPRGRGS--NNPIKVVEFAASEDN-VNWTPIGR 112 (169)
T ss_dssp SCCEECCCSSCCCCSCEEEEEEEEEEEEEEEEEEEECCTTC--CCCCCEEEEEEESSS-SCCEEEEE
T ss_pred CCceEccCcCCCCCCCEEEEEECCCcEEEeEEEEEecCCCC--CCCeeEEEEEEeCCC-CCcEEeEE
Confidence 4567664210 023578999999999999999999986432 478999999999999 99998864
No 33
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A
Probab=98.60 E-value=2.4e-07 Score=66.68 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=49.6
Q ss_pred CCcCCCCccCC-CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 66 GGAWCPKHMVG-NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 66 ~~aW~~~~~~~-~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
...|.+..... ....+||+|||++++.|++|.++++.... ..+++.|+|.+|.|| ..|..+.+
T Consensus 39 ~T~W~s~~~~~~~~~p~~i~vDLg~~~~i~~v~~~~~~~~~--~~~~~~~~I~~S~Dg-~~W~~v~~ 102 (159)
T 3f2z_A 39 ETFWHSRWQGGSDPLPYEIIIDMNHRVKIAQIELLPRGRGS--NNPIKVVRFEASEDG-TNWESIGQ 102 (159)
T ss_dssp TCCEECCCTTCCCCSCEEEEEEEEEEEEEEEEEEEECCTTC--CCCCCEEEEEEESSS-SSCEEEEE
T ss_pred CCeEEcCCcCCCCCCCEEEEEECCCceEEEEEEEEecCCCC--CCCeeEEEEEEEcCC-CCeEEeEE
Confidence 46687653100 23578999999999999999999886432 468999999999999 99998864
No 34
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens}
Probab=98.54 E-value=1.2e-07 Score=68.41 Aligned_cols=55 Identities=11% Similarity=0.361 Sum_probs=45.3
Q ss_pred CCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEee
Q psy17120 65 NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWK 130 (137)
Q Consensus 65 ~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~ 130 (137)
....|++.. + ..+|+||||++++.|++|.+|.. .++++.|+|.+|.|| ..|+.+.
T Consensus 51 ~~T~W~s~~---~-~~p~~~VDLg~~~~V~~v~i~~~------r~~v~~y~I~~S~DG-~~W~~~~ 105 (149)
T 4a42_A 51 ENTLWVPGQ---E-EEKSVTFDLSKEKDISAIDIVSK------GNSPLKYSIEISNDG-TEWTKIV 105 (149)
T ss_dssp TTSCBCCCS---C-SSEEEEEEEEEEEECCEEEEEEC------SSSCCCEEEEEESSS-SSCEEEE
T ss_pred CCCEEEcCC---C-CCCeEEEECCCcEEEEEEEEEcC------CCCcEEEEEEEEcCC-CeEeEeE
Confidence 457899974 3 67788999999999999999521 134899999999999 9999864
No 35
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Probab=98.50 E-value=6.5e-07 Score=65.61 Aligned_cols=61 Identities=8% Similarity=0.055 Sum_probs=49.2
Q ss_pred CCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCC
Q psy17120 65 NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNG 134 (137)
Q Consensus 65 ~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g 134 (137)
....|++.. .+..+||||||+.++.|.+|.++=.. ....+.|+|+.|.|| .+|..+.+..+
T Consensus 54 ~~T~W~s~~---~~~~~Wi~VDLg~~~~v~~v~i~~~~-----~~~~~~y~IevS~Dg-~~W~~v~~~t~ 114 (161)
T 4a3z_A 54 LSSLWISDN---GAMPANATIDLEGNNFVDFLELHFEK-----EGFRFQFKVEVEDES-GNRETVLDMTS 114 (161)
T ss_dssp TTCCEEBGG---GCSSEEEEEEEEEEEEEEEEEEECSS-----TTCCEEEEEEEECTT-CCEEEEEECTT
T ss_pred CCCeEEcCC---CCCCeEEEEECCCcEEEeEEEEEECC-----CCceEEEEEEEEcCC-CCEEEEEEecC
Confidence 457899874 45789999999999999999987432 234579999999999 99999876543
No 36
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=98.43 E-value=7e-07 Score=79.12 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=44.8
Q ss_pred CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
.+..+||||||++++.|++|.+|++.+.. ..+|+.|+|.+|.|| .+|+.+.+
T Consensus 636 ~~~p~wl~VDLg~~~~V~~V~i~~r~~~~--~g~v~~y~I~~S~DG-~~W~~v~~ 687 (737)
T 2v5d_A 636 HEGPHHLTLELDNVYEINKVKYAPRQDSK--NGRITGYKVSVSLDG-ENFTEVKT 687 (737)
T ss_dssp CCCCCEEEEEEEEEEEEEEEEEECCSSCC--TTEEEEEEEEEESSS-SCCCCSEE
T ss_pred CCCCeEEEEECCCcEEEEEEEEEeccCCC--CCceEEEEEEEEcCC-CceEEEEe
Confidence 35689999999999999999999986421 469999999999999 99988753
No 37
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.37 E-value=8.2e-07 Score=76.22 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=48.3
Q ss_pred CCcCCCCccC--CCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCc-EEe
Q psy17120 66 GGAWCPKHMV--GNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKW-RRW 129 (137)
Q Consensus 66 ~~aW~~~~~~--~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W-~~y 129 (137)
...|++.... .....+||||||++++.|++|.++.+...+. ..+++.|+|.+|.|| .+| +.+
T Consensus 53 ~T~W~s~~~~~~~~~~~~~l~vDLg~~~~i~~v~~~~~~~~~~-~~~~~~y~i~~S~Dg-~~w~~~v 117 (656)
T 1k3i_A 53 DTFWHTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLPRQDGNQ-NGWIGRHEVYLSSDG-TNWGSPV 117 (656)
T ss_dssp TCCEECCCGGGCCCCSCEEEEEEEEEEEEEEEEEEECCCSSCC-TTCBCEEEEEEESSS-SCCCSCS
T ss_pred CCEEEeCCCCCCCCCCCceEEecCCCcEEEEEEEEEecccCCC-CCCeeEEEEEEECCC-CCcceee
Confidence 4679887420 0125799999999999999999999854321 468999999999999 999 544
No 38
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=98.22 E-value=3.9e-06 Score=71.18 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=52.5
Q ss_pred CCCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 64 KNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 64 ~~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
.....|+|.. ++..+||+|||+++..|..|.+|-.... .+.|++|+|.++.|| ..|+.+.+
T Consensus 377 n~~TyW~a~~---~~~~~~l~idLg~~~~~n~v~IqE~i~~---gqRV~~y~Ve~~~dg-g~W~~va~ 437 (478)
T 3ues_A 377 NRDTFWRPDA---DDAAPAITLTLPQPTTINAIVIEEAIEH---GQRIEHLRVTGALPD-GTERVLGQ 437 (478)
T ss_dssp CTTCCBCCCT---TCSSCEEEEEEEEEEEEEEEEEEECGGG---CCCEEEEEEEEECTT-SCEEEEEE
T ss_pred CCCceEeCCC---CCCCeeEEEECCCCcEEEEEEEeecccC---CCceEEEEEEEEeCC-CCEEEEEe
Confidence 3468999985 5678999999999999999999976543 368999999999998 89999875
No 39
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*
Probab=98.03 E-value=1.4e-05 Score=57.38 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=45.0
Q ss_pred CCcCCCCc--cCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEEC-CCCcCcEEe
Q psy17120 66 GGAWCPKH--MVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR-PGFTKWRRW 129 (137)
Q Consensus 66 ~~aW~~~~--~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~-dg~~~W~~y 129 (137)
...|.+.. ....+..+||+|||+.++.|..|.+..+.+... ...++.|+|..+. || ..|...
T Consensus 38 ~t~W~~~~ct~t~~~~~~W~~VDLg~~~~v~~V~i~~~~d~~~-~~r~~~~~I~vs~~dg-~~w~~~ 102 (153)
T 3lei_A 38 DSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNV-ANRLSNFDVVLLNEAK-QEVARQ 102 (153)
T ss_dssp CCCGGGTCSCCCCSBTTCEEEEEEEEEEEEEEEEEEECCSTTC-GGGSCSEEEEEECTTC-CEEEEE
T ss_pred CCccccCccccCCCCCCCeEEEECCCceEEeEEEEEeCCCCcc-cccceeEEEEEECCCC-Cccccc
Confidence 46687621 002467899999999999999999987653111 3577899999885 67 899874
No 40
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=97.88 E-value=5.4e-05 Score=64.22 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=47.2
Q ss_pred CCcCCCCccCC--CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEE-ee
Q psy17120 66 GGAWCPKHMVG--NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRR-WK 130 (137)
Q Consensus 66 ~~aW~~~~~~~--~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~-y~ 130 (137)
...|....... ....+||+|||++++.|.+|.++.+.... ..+++.|+|.+|.|| .+|+. +.
T Consensus 489 ~T~w~s~~~~~~~~~~~~~i~vDLg~~~~i~~v~~~~r~~~~--~~~~~~y~i~~S~Dg-~~w~~~v~ 553 (601)
T 1w8o_A 489 STFWHTEWSRADAPGYPHRISLDLGGTHTISGLQYTRRQNSA--NEQVADYEIYTSLNG-TTWDGPVA 553 (601)
T ss_dssp TCCEECCCSSTTCCCSCEEEEEEEEEEEEEEEEEEEECSSCS--TTCBCEEEEEEESSS-SSCEEEEE
T ss_pred CCcEecCCCCCCCCCCCeEEEEECCCcEEEeEEEEecCCCCC--CCceEEEEEEEECCC-Cccceeee
Confidence 35676653100 12379999999999999999999875421 468999999999999 99995 64
No 41
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=97.69 E-value=5.5e-06 Score=77.09 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred CcCCCCccCCCCCC-ceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEEC-CCCcCcEEeec
Q psy17120 67 GAWCPKHMVGNDGH-EYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR-PGFTKWRRWKG 131 (137)
Q Consensus 67 ~aW~~~~~~~~~~~-~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~-dg~~~W~~y~~ 131 (137)
.+|++.. .... +||||||++++.|++|.+|+|.+.+....||++|+|.+|. || ..|+.+.+
T Consensus 1260 SaWs~ss---~~~PgqWLqVDLGe~~tIsgf~YqpRqdg~~~NG~VksYkIeVS~dDG-~nWttVa~ 1322 (1376)
T 2zxq_A 1260 TSWSENA---VGNGTAWYQFNLNEPTTINGLRYLPRSGGMNANGKIKGYKITLTLADG-TTKDVVTD 1322 (1376)
T ss_dssp -------------------------------------------------------------------
T ss_pred ecccccC---CCCCceEEEEEcCCcEEEEEEEEecCccCCCCCCceEEEEEEEECCCC-CeEEEEEe
Confidence 4666542 2333 9999999999999999999986410115799999999999 89 99998764
No 42
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A*
Probab=97.62 E-value=0.00015 Score=52.37 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=39.8
Q ss_pred CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEE-ECCCCcCcEEe
Q psy17120 77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDF-WRPGFTKWRRW 129 (137)
Q Consensus 77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~y-S~dg~~~W~~y 129 (137)
.+..+|++|||+..+.|..|.+.-|.+-.. ...++.|.|.. +.|| ..|...
T Consensus 51 ~~~~~W~~VDLg~~~~v~~V~i~nr~d~~~-~~r~~~~~I~v~s~dg-~~w~~~ 102 (153)
T 4gwi_A 51 FEDNAWWQVDLGKTENVGKVKLYNRGDGNV-ANRLSNFDVVLLNEAK-QEVARQ 102 (153)
T ss_dssp SBTTCEEEEEEEEEEEEEEEEEEECCSTTC-GGGSCSEEEEEECTTS-CEEEEE
T ss_pred CCCCCEEEEECCCCEEEEEEEEEcccCCch-hhcccceEEEEECCCC-Ceeeee
Confidence 467899999999999999999987653210 25688999965 5688 899864
No 43
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}
Probab=97.45 E-value=0.00069 Score=49.93 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=49.5
Q ss_pred CCcCCC--CccCCCCCCceEEeecCeeEEEEEEEeecccCCC--CCcceEeEEEEEEECCCCcCcEEeecC
Q psy17120 66 GGAWCP--KHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNG--LGQEYAEEIVVDFWRPGFTKWRRWKGR 132 (137)
Q Consensus 66 ~~aW~~--~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~--~~~~wVtsy~v~yS~dg~~~W~~y~~~ 132 (137)
...|.. .. .....+||+|||+++..|++|....|.... .....++.|.|..|.|+ ..|+.+.+.
T Consensus 50 ~T~Wht~w~~--~~~~P~~itIDLg~~~~v~~~~~~~r~~~~~~~~~g~ik~~~I~~S~Dg-~~W~~v~~~ 117 (172)
T 3hnm_A 50 GTQWLCRWDV--KEPLPYYFVFDMGKEYTLFRFGFANPVAPAAHVWAGTSKAGYVEASIDN-ENWVKLKDW 117 (172)
T ss_dssp TSCEECCCSS--CCCSCEEEEEEEEEEEEEEEEEEECCCSSCTTSTTCCEEEEEEEEESSS-SCEEEEECC
T ss_pred CCeEEecCCC--CCCCCEEEEEECCCceEEeEEEEEecCCCCcccCCCCeEEEEEEEEeCC-CCeEEeEEE
Confidence 466765 21 134679999999999999999999886531 01357999999999999 999988654
No 44
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=97.38 E-value=0.00034 Score=54.83 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=43.3
Q ss_pred CCcCCCC----ccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCC----CcCcEEe
Q psy17120 66 GGAWCPK----HMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPG----FTKWRRW 129 (137)
Q Consensus 66 ~~aW~~~----~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg----~~~W~~y 129 (137)
...|.+. . ..+..+||+|||+..+.|.+|.++-+ +. . ..+++.|+|..|.+. ..+|...
T Consensus 180 ~t~W~~~~c~~t--~~~~~~W~~VDLg~~~~v~~V~i~~~-d~-~-~~~~~~~~i~vs~s~~~~~~~n~~~~ 246 (293)
T 3cqo_A 180 ANNWEMASCTHT--KNTMDPWWRMDLSQTHRVFSVKVTNR-DS-F-EKRINGAEIRIGDSLDNNGNHNPRCA 246 (293)
T ss_dssp CCSGGGTCCCCC--CSEESCEEEEEEEEEEEEEEEEEECC-SS-S-GGGGTTEEEEEESCCGGGGTTSCEEE
T ss_pred CCccccCccccC--CCCCCCEEEEECCCeEEEeEEEEEcc-Cc-c-ccccCCeEEEEeccCccccccCceee
Confidence 4567652 2 13458999999999999999999988 42 1 468899999997543 1577653
No 45
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=97.33 E-value=0.0012 Score=47.88 Aligned_cols=52 Identities=8% Similarity=0.216 Sum_probs=44.2
Q ss_pred CCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCc--CcEEe
Q psy17120 65 NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFT--KWRRW 129 (137)
Q Consensus 65 ~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~--~W~~y 129 (137)
....|+.. ....+||.|||++++.|.+|.+|-. -++.|.|..+.|+ . .|..+
T Consensus 45 ~~T~W~t~----g~~Pq~i~Idf~k~~~is~~~i~~~--------~vk~~~ie~s~d~-~p~~w~~i 98 (153)
T 1tvg_A 45 PETFWTTT----GMFPQEFIICFHKHVRIERLVIQSY--------FVQTLKIEKSTSK-EPVDFEQW 98 (153)
T ss_dssp TTCCEECC----SCSSEEEEEEEEEEEEEEEEEEEEE--------SEEEEEEEEECSS-SSCCCEEE
T ss_pred CCceEECC----CCCCcEEEEECCCceEEEEEEEEec--------CCEEEEEEEECCC-CCcceEEe
Confidence 45899986 3458999999999999999999943 2899999999998 7 99886
No 46
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15
Probab=97.05 E-value=0.0011 Score=47.62 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=34.4
Q ss_pred CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCC
Q psy17120 77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPG 122 (137)
Q Consensus 77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg 122 (137)
.+..+|++|||+..+.|..|.+.-+.+-. ...+..|.|..+.+.
T Consensus 55 ~~~~~W~~VDLg~~~~V~~V~i~~r~d~~--~~r~~~~~i~v~~s~ 98 (158)
T 1k12_A 55 GQANPWWRVDLLQVYTITSVTITNRGDCC--GERISGAEINIGQHL 98 (158)
T ss_dssp SCSSCEEEEEEEEEEEEEEEEEEECSSSC--TTTTTTCEEEEESSC
T ss_pred CCCCCEEEEECCCceEEeEEEEEeCCCcC--ccccCCEEEEEEcCC
Confidence 46789999999999999999998654321 245678888888765
No 47
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A*
Probab=97.01 E-value=0.0024 Score=45.73 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=36.1
Q ss_pred CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCC
Q psy17120 77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPG 122 (137)
Q Consensus 77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg 122 (137)
.+..+|++|||+..+.|..|.+.-+.+-. .+.+..|.|..+.++
T Consensus 57 ~~~~~W~~VDLg~~~~V~~V~i~~r~d~~--~~r~~~~~I~v~~~~ 100 (151)
T 2j1v_A 57 ADNPSWWEVDLKKMDKVGLVKIYNRTDAE--TQRLSNFDVILYDNN 100 (151)
T ss_dssp SCTTCEEEEEEEEEEEEEEEEEEECCSSC--GGGSCSEEEEEECTT
T ss_pred CCCCCEEEEECCCCeEcCEEEEEcCCCcc--ccccCCEEEEEECCC
Confidence 46789999999999999999998654321 367789999999887
No 48
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=96.99 E-value=0.0016 Score=50.93 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=32.6
Q ss_pred CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECC
Q psy17120 77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121 (137)
Q Consensus 77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~d 121 (137)
.+..+|+||||+.++.|.+|.++.+.+.. .+.+..|.|..+.+
T Consensus 47 ~~~~~W~~VDLg~~~~v~~V~i~~r~d~~--~~~~~~~~i~v~~s 89 (293)
T 3cqo_A 47 EQTNPWWRVDLLEPYIVTSITITNRGDCC--PERLNGVEIHIGNS 89 (293)
T ss_dssp SBSSCEEEEEEEEEEEEEEEEEECCSSSC--GGGGTTEEEEEESC
T ss_pred CCCCCEEEEECCCceEEEEEEEEeCCCCc--cccccCeEEEEecC
Confidence 35689999999999999999999875421 24566677766554
No 49
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A
Probab=96.89 E-value=0.0045 Score=43.71 Aligned_cols=54 Identities=7% Similarity=0.058 Sum_probs=43.6
Q ss_pred CCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCC-CcCcEEee
Q psy17120 65 NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPG-FTKWRRWK 130 (137)
Q Consensus 65 ~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg-~~~W~~y~ 130 (137)
....|+.. ....+||.|||+++..|++|.+|-. -++.|.|.-+.|+ -..|..+.
T Consensus 37 ~~T~W~s~----g~~pq~i~I~~~~~~~is~~~i~~~--------~~k~~~ie~s~~~~p~~w~~i~ 91 (139)
T 2yc2_A 37 DNTFWVTT----GMFPQEFVLRLESCIRVSKITTLSL--------NVRKLAVEKCDQDKPDQFEKVF 91 (139)
T ss_dssp TTCCEECC----SSSCEEEEEEEEEEEEEEEEEEEEE--------SEEEEEEEEECSSSCCCCEEEE
T ss_pred CCCEEeCC----CCCCeEEEEECCCceEEEEEEEEec--------CCcEEEEEEecCCCCCceEEEE
Confidence 46899986 3447999999999999999999942 2899999999886 14898873
No 50
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae}
Probab=96.68 E-value=0.0052 Score=43.91 Aligned_cols=49 Identities=8% Similarity=0.134 Sum_probs=36.7
Q ss_pred CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEE--CCCCcCcEE
Q psy17120 77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFW--RPGFTKWRR 128 (137)
Q Consensus 77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS--~dg~~~W~~ 128 (137)
.+..+|+||||+..+.|..|.+.-+.+-. .+....|.|..+ .|+ ..|..
T Consensus 54 ~~~~~Ww~VDLg~~~~V~~V~i~~r~d~~--~~r~~~~~I~vg~s~d~-~~~~~ 104 (148)
T 2j22_A 54 EDSPSWWEIDLAQTEELEKLIIYNRTDAE--IQRLSNFDIIIYDSNDY-EVFTQ 104 (148)
T ss_dssp SCTTCEEEEEEEEEEEEEEEEEEECCSSC--GGGSEEEEEEEECTTSC-EEEEE
T ss_pred CCCCCEEEEECCCCEEeeEEEEEecCCCc--ccccCCEEEEEEeCCCC-Ccccc
Confidence 46789999999999999999997654321 256788888874 455 66753
No 51
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=96.32 E-value=0.0017 Score=57.56 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=19.4
Q ss_pred CcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEe
Q psy17120 67 GAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRW 129 (137)
Q Consensus 67 ~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y 129 (137)
.-|+.........++|++|||++++.|.+|.+.-+.+... . | |+|+||.|| .+|+.+
T Consensus 615 T~w~s~~~~~~~~g~wi~VdL~~~~~V~~I~i~~~~~~~~-~-~---~~ve~S~DG-k~W~~v 671 (716)
T 2cho_A 615 LISPANEVVKWAAGNSVEIELDAIYPGENIQINFGKDAPC-T-W---GRLEISTDA-KEWKTV 671 (716)
T ss_dssp EECC------------CEEEEEEEEEEEEEEECC-----------------------------
T ss_pred eEEECCCCccCCCCCEEEEEcCCcEEEEEEEEecCCCCCC-c-e---EEEEEECCC-CCccCC
Confidence 5687764111156899999999999999997764433221 2 3 999999999 999887
No 52
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A
Probab=94.50 E-value=0.0065 Score=55.12 Aligned_cols=63 Identities=11% Similarity=0.196 Sum_probs=0.0
Q ss_pred CcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCC----cceEeEEEEEEECCCCcCcEEeecCCCe
Q psy17120 67 GAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLG----QEYAEEIVVDFWRPGFTKWRRWKGRNGK 135 (137)
Q Consensus 67 ~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~----~~wVtsy~v~yS~dg~~~W~~y~~~~g~ 135 (137)
..||... ...||+|||+.++.|.+..+.-....+.. ..-.+.|+|+||.|+ ..|+....-.|+
T Consensus 835 tKWcs~~-----~~~wl~vDLg~~~tI~~~vv~hagaggE~~~~~~~NT~dF~Lq~s~d~-~~W~~vd~VtgN 901 (937)
T 3gdb_A 835 DKWSSAQ-----LSGSVDIRLTKSRTVVRWVMDHAGAGGESVNDGLMNTKDFDLYYKDAD-GEWKLAKEVRGN 901 (937)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CccccCC-----CCceEEEECCCcEEEeEEEEEecccCccccccccccccceEEEEecCC-CCeEEeeEeeCC
Confidence 5899762 46899999999999999988732111110 123578999999998 999998766665
No 53
>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A*
Probab=93.26 E-value=0.22 Score=35.94 Aligned_cols=68 Identities=4% Similarity=-0.081 Sum_probs=45.5
Q ss_pred eeecCCCCCCcCCCCccCCCCCCceEEeecCeeE--EEEEEEeecccCCCCCcceEeEEEEEEEC--CCCcCcEEeecCC
Q psy17120 58 SRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLH--IVTGVQLQGRFGNGLGQEYAEEIVVDFWR--PGFTKWRRWKGRN 133 (137)
Q Consensus 58 aRLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~--~ItgI~tQG~~~~~~~~~wVtsy~v~yS~--dg~~~W~~y~~~~ 133 (137)
.+|-.......|.... ....||+|||++.. .|.+|.-..|.+. ..-+..++++.|+ |+ ..|..+-...
T Consensus 26 ~~~~DGn~~T~f~~~~----~~~~~i~iDLG~~~~~~l~~f~Y~Pr~~~---~~~miGg~fegSnd~Df-~~~~tL~~I~ 97 (155)
T 2yfu_A 26 HKAFDGDLNTFFDGPT----ANGCWLGLDFGEGVRNVITQIKFCPRSGY---EQRMIGGIFQGANKEDF-SDAVTLFTIT 97 (155)
T ss_dssp GGGGSSCTTCCBCCSS----SSSCEEEEECCTTCCEEEEEEEEECCTTC---GGGGTTCEEEEESSTTC-TTCEEEEECC
T ss_pred hheecCCCCcEeEcCC----CCCceEEEECCCCcceEEeeEEEecCccc---ccCCcEEEEEEECCCCC-CCeEEEEEec
Confidence 3444333445664321 23689999999976 8999988887653 2344578888888 55 8898765433
No 54
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=88.11 E-value=0.92 Score=37.93 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=41.0
Q ss_pred CCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 79 GHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 79 ~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
...+|++||+++..|..|.+|-....+ +-|++|.|.+-.+| .|+.+.+
T Consensus 354 ~~~~~~i~l~~~~~fn~v~l~E~I~~G---QRV~~f~ve~~~~g--~W~~v~~ 401 (443)
T 3gza_A 354 QKKSLTLKLGKEQSVNYCIIQENIKNG---ERIRQYQIEAKVNG--KWQTVCK 401 (443)
T ss_dssp SSSEEEEEEEEEEEEEEEEEEECGGGC---CCEEEEEEEEEETT--EEEEEEE
T ss_pred CCceEEEEcCCCceEeEEEEEecCCCC---CcccEEEEEEEeCC--eEEEEEe
Confidence 468999999999999999999876542 67999999999876 8998864
No 55
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=84.42 E-value=4.3 Score=33.87 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=39.0
Q ss_pred CcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECC-CCcCcEEee
Q psy17120 67 GAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP-GFTKWRRWK 130 (137)
Q Consensus 67 ~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~d-g~~~W~~y~ 130 (137)
.-|.... ....--|++||++...|+-|++|-.... -.+..|+=|.| | .+|.+|+
T Consensus 93 ~wwqs~~---~~~~v~itl~l~~~~~~~~v~~~f~s~r------P~~~~ieks~d~g-~tw~p~q 147 (525)
T 4aqs_A 93 IWWQSEN---GVENVTIQLDLEAEFHFTHLIMTFKTFR------PAAMLIERSSDFG-KAWGVYR 147 (525)
T ss_dssp CCEECCT---TCCCCEEEEEEEEEEEEEEEEEEESSCC------CSEEEEEEESSTT-SSCEEEE
T ss_pred ccccCCC---CCcCeEEEEcCCCeEEEEEEEEEEECCC------CCeEEEEEecCCC-CCCccee
Confidence 4576653 3446789999999999999999864322 24555666888 7 9999885
No 56
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=59.67 E-value=18 Score=29.68 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=37.5
Q ss_pred CCcCCCCccCC--CCCCceEEeecCeeEEEEEEEeecc-cCCCCCcceEeEEEEEEECC-CCcCcEEee
Q psy17120 66 GGAWCPKHMVG--NDGHEYIEVNLHDLHIVTGVQLQGR-FGNGLGQEYAEEIVVDFWRP-GFTKWRRWK 130 (137)
Q Consensus 66 ~~aW~~~~~~~--~~~~~wLQVDL~~~~~ItgI~tQG~-~~~~~~~~wVtsy~v~yS~d-g~~~W~~y~ 130 (137)
..-|....... ....-=|++||++...|+-|+++-. ... -.+..|+=|.| | .+|.+|+
T Consensus 91 ~twWQS~~~~~g~~~~~V~itLdL~~~f~~t~v~l~F~~spR------P~~m~ierS~D~G-~tW~p~q 152 (403)
T 2y38_A 91 ERWWQSPPLSRGLEYNEVNVTLDLGQVFHVAYVLIKFANSPR------PDLWVLERSTDFG-HTYQPWQ 152 (403)
T ss_dssp SCCEECCCSTTCSSTTCCEEEEEEEEEEEEEEEEEEECSSCC------CSEEEEEEESSSS-SSEEEEE
T ss_pred ceeeccCCccCCCccccceeEEeCCCcEEEEEEEEEecCCCC------CCeEEEEeccCCC-CCcccee
Confidence 35666653211 1124668999999999999999863 211 12344555888 7 9898875
No 57
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=55.47 E-value=39 Score=24.40 Aligned_cols=65 Identities=12% Similarity=0.231 Sum_probs=44.5
Q ss_pred eecCCCCCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCCCCCcce-EeEEEEEEECCCCcCcEEee
Q psy17120 59 RLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEY-AEEIVVDFWRPGFTKWRRWK 130 (137)
Q Consensus 59 RLn~~~~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~w-Vtsy~v~yS~dg~~~W~~y~ 130 (137)
.|........|-... ...+||.|+|.+...|..|.++=..... ..| .+...|.-+.+. ..|..++
T Consensus 43 ~L~D~~~~TyWqSdg----~qpH~I~i~f~k~v~i~~l~i~vd~~~D--eSYtPs~I~v~aG~~~-~dL~ei~ 108 (171)
T 1jhj_A 43 QLRDDNLETYWQSDG----SQPHLVNIQFRRKTTVKTLCIYADYKSD--ESYTPSKISVRVGNNF-HNLQEIR 108 (171)
T ss_dssp HHHSSCTTCCEECCS----SSSEEEEEEEEEEEEECEEEEEEEHHHH--GGGSEEEEEEEEESST-TSCEEEE
T ss_pred HcCCCCCCeeEccCC----CCCeEEEEEECCCceEEEEEEEECCCCC--CCCCcEEEEEEEeCCc-ccceeEE
Confidence 344444568899874 4589999999999999999988654111 234 356666666666 6666554
No 58
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=52.71 E-value=20 Score=29.70 Aligned_cols=58 Identities=10% Similarity=0.227 Sum_probs=37.6
Q ss_pred CCcCCCCccCC--CCCCceEEeecCeeEEEE-EEEeecccCCCCCcceEeEEEEEEECC-CCcCcEEee
Q psy17120 66 GGAWCPKHMVG--NDGHEYIEVNLHDLHIVT-GVQLQGRFGNGLGQEYAEEIVVDFWRP-GFTKWRRWK 130 (137)
Q Consensus 66 ~~aW~~~~~~~--~~~~~wLQVDL~~~~~It-gI~tQG~~~~~~~~~wVtsy~v~yS~d-g~~~W~~y~ 130 (137)
..-|.....+. +...-=|++||++...|+ -|+++-.... -.+..|+=|.| | .+|.+|+
T Consensus 115 ~twWQS~~~~~~~~p~~V~itLdL~~~f~~t~~i~l~F~spR------P~am~ierS~D~G-~tW~p~q 176 (426)
T 3zyj_B 115 STFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGR------PDQMILEKSLDYG-RTWQPYQ 176 (426)
T ss_dssp CCCEEBCCCCSCSSCCCEEEEEEEEEEEEECSCEEEEESSCC------CSEEEEEEESSTT-SSCEEEE
T ss_pred CceecCCcccCCCCccceeEEEcCCCcEEEEEEEEeecCCCC------CCeEEEEeccCCC-CCceehH
Confidence 46677764211 112456889999999998 5777764332 23445666888 7 9999884
No 59
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=52.47 E-value=30 Score=28.05 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=36.5
Q ss_pred CCcCCCCccCC---CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECC-CCcCcEEee
Q psy17120 66 GGAWCPKHMVG---NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP-GFTKWRRWK 130 (137)
Q Consensus 66 ~~aW~~~~~~~---~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~d-g~~~W~~y~ 130 (137)
..-|....... ....--|++||++...|+-|+++-.... -.+..|.=|.| | .+|.+|+
T Consensus 84 ~TwWQS~~~~~~~~~~~~VtitLdL~~~f~~t~v~i~F~~~r------P~~m~Iers~d~G-~tw~p~q 145 (375)
T 4aqt_A 84 TTWWQSQTMLAGVQYPNSINLTLHLGKAFDITYVRLKFHTSR------PESFAIYKRTRED-GPWIPYQ 145 (375)
T ss_dssp CCCEECCCGGGTCSSSCCEEEEEEEEEEEEEEEEEEEESSSC------CSEEEEEEESSSS-SCCEEEE
T ss_pred CceEECCCccccCCCCcceEEEEcCCCeEEEEEEEEEecCCC------CCcEEEEEecCCC-CCcccee
Confidence 35677654211 1123459999999999999999864332 12344443544 6 9999885
No 60
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=52.02 E-value=44 Score=26.85 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=37.1
Q ss_pred CCcCCCCccCCC--CCCceEEeecCeeEEEE-EEEeecccCCCCCcceEeEEEEEEECC-CCcCcEEee
Q psy17120 66 GGAWCPKHMVGN--DGHEYIEVNLHDLHIVT-GVQLQGRFGNGLGQEYAEEIVVDFWRP-GFTKWRRWK 130 (137)
Q Consensus 66 ~~aW~~~~~~~~--~~~~wLQVDL~~~~~It-gI~tQG~~~~~~~~~wVtsy~v~yS~d-g~~~W~~y~ 130 (137)
..-|........ ....=|++||++...|+ -|+++-.... -.+..|+=|.| | .+|.+|+
T Consensus 87 ~TwWQS~~~~~~~~p~~VnlTL~L~k~felt~~iil~F~spR------P~sm~ierS~D~G-~tW~P~Q 148 (338)
T 3tbd_A 87 ATYWQSITWSRYPSPLEANITLSWNKTVELTDDVVMTFEYGR------PTVMVLEKSLDNG-RTWQPYQ 148 (338)
T ss_dssp CCCEEBCCSTTTTSCCCEEEEEEEEEEEEECSCEEEEESSCC------CSEEEEEEESSTT-SSCEEEE
T ss_pred CceeccCcccCCCCCccceEEEcCCCeEEEEEEEEeecCCCC------CCeEEEEeccCCC-CCceeeh
Confidence 466777642111 12234889999999998 5777764332 23455666888 7 9999985
No 61
>3nng_A Uncharacterized protein; F5_F8_TYPE_C domain, NESG, structural genomics, PSI-2, prote structure initiative; 2.18A {Bacteroides fragilis}
Probab=32.19 E-value=1.3e+02 Score=21.09 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=40.9
Q ss_pred CCCCceEEeecCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeec
Q psy17120 77 NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 77 ~~~~~wLQVDL~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~ 131 (137)
+...-|...-|.+|..++|+.+.-....++ ..=+++=+|....+|...|..|..
T Consensus 58 nagecww~t~lp~p~~ltgfsvtkqsaygs-synlr~aeikvrkeg~tew~~y~~ 111 (168)
T 3nng_A 58 NAGECWWNTVLDRPVTLTGFSVTKQSAYGS-GYNLRSAEIKVRKEGETEWVTYPR 111 (168)
T ss_dssp HHSCCEEEEEEEEEEEEEEEEECCCSSSCG-GGBCCEEEEEEEETTCSSCEECSS
T ss_pred cccceehhcccCCceeeeeeeEEeeeeccc-ccccceeeEEEeecCcceeEeecc
Confidence 345678888899999999887765444432 234788899999999899999753
No 62
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=26.38 E-value=60 Score=23.83 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=36.2
Q ss_pred CCCcCCCCccCCCCCCceEEeecCeeEEEEEEEeecccCC----CCCcceEeEEEEEEECCC
Q psy17120 65 NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGN----GLGQEYAEEIVVDFWRPG 122 (137)
Q Consensus 65 ~~~aW~~~~~~~~~~~~wLQVDL~~~~~ItgI~tQG~~~~----~~~~~wVtsy~v~yS~dg 122 (137)
.+.+||-. ....+|.|.|.++..+++|.++=.... +....=.+.|.|.-..+.
T Consensus 79 pG~CW~f~-----g~~g~l~I~Ls~~I~~~~VtieHi~~~~sp~~~~~SAPKdf~V~g~~~~ 135 (198)
T 4dxt_A 79 PGNCWAFQ-----GPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDED 135 (198)
T ss_dssp TTCSEEEE-----TTCEEEEEEEEEEEEEEEEEEECCCGGGSGGGCCTTSBCEEEEEEESSS
T ss_pred CcceeecC-----CCcceeeeecCCeEEEEEEEEEcCchhcccccCcCCCCcEEEEEEEcCC
Confidence 47899976 346789999999999999999843210 011244577777665553
No 63
>1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP, crystallin family; NMR {Streptomyces SP} SCOP: b.11.1.4
Probab=22.31 E-value=1.6e+02 Score=18.73 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=34.5
Q ss_pred CceEEee--cCeeEEEEEEEeecccCCCCCcceEeEEEEEEECCCCcCcEEeecCCCeeC
Q psy17120 80 HEYIEVN--LHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKEV 137 (137)
Q Consensus 80 ~~wLQVD--L~~~~~ItgI~tQG~~~~~~~~~wVtsy~v~yS~dg~~~W~~y~~~~g~~~ 137 (137)
..||+|. |..+..+--.|-.|..+.+ .-||.+.. .| .+|..|-+.||..|
T Consensus 10 e~~LkiwsH~~gr~s~~CyAN~G~~~fg--~wWVdkIs-----TG-NN~v~yydangd~v 61 (84)
T 1f53_A 10 ENFLKIWSHSGGQQSVDCYANRGRIDFG--GWWVDKIS-----TG-NNDLIYYDANGDSV 61 (84)
T ss_dssp SSSEEEEEECSSCEEEEEECSSBCCBCC--SCCEEEEE-----CT-TSCCEEEETTTEEE
T ss_pred CCeEEEEEecCCCcccceeeccCccccc--CEEEEEEe-----cC-CceEEEecCCCCeE
Confidence 3488875 4556777778888887764 57887632 35 56777778888754
No 64
>3o12_A Uncharacterized protein YJL217W; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.50A {Saccharomyces cerevisiae}
Probab=20.34 E-value=64 Score=23.88 Aligned_cols=18 Identities=6% Similarity=0.089 Sum_probs=15.7
Q ss_pred EEEEEEECCCCcCcEEeec
Q psy17120 113 EIVVDFWRPGFTKWRRWKG 131 (137)
Q Consensus 113 sy~v~yS~dg~~~W~~y~~ 131 (137)
.|.+.||.|| ..|+.+..
T Consensus 158 ~~~f~YS~DG-~~W~~lr~ 175 (221)
T 3o12_A 158 VLRIQVSSDK-KTWPLVRL 175 (221)
T ss_dssp EEEEEEESSS-SCCCEEEE
T ss_pred EEEEEEECCC-CCCEECcc
Confidence 6889999999 99998764
Done!