RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17120
(137 letters)
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune
system-transferase complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 351
Score = 95.2 bits (236), Expect = 1e-24
Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 26/136 (19%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
C ALG+++ IPD DISASS+ S + RL
Sbjct: 6 CRYALGMQDRTIPDSDISASSSWSDS-TAARHS------------------------RLE 40
Query: 62 HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
GAWCP V EY++V+L LH+V V QGR GLG+E++ + + R
Sbjct: 41 SSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRD 100
Query: 122 GFTKWRRWKGRNGKEV 137
G +W WK R G+EV
Sbjct: 101 G-RRWMGWKDRWGQEV 115
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase,
nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo
sapiens} PDB: 2z4f_A
Length = 178
Score = 87.4 bits (216), Expect = 8e-23
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 27/137 (19%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
C LG+ G IPD+DI+ASS S+ ++G RL
Sbjct: 18 CRYPLGMSGGQIPDEDITASSQWSEST-AAKYG------------------------RLD 52
Query: 62 HDKNGGAWCPKHMV-GNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
++ GAWCP+ V +D E+++++LH LH +T V QGR G G E+A +++ R
Sbjct: 53 SEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSR 112
Query: 121 PGFTKWRRWKGRNGKEV 137
G T+W W+ R+GK+V
Sbjct: 113 DG-TRWISWRNRHGKQV 128
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant,
anti- coagulant, membrane binding, phosphatidyl-serine
binding; 1.67A {Bos taurus} PDB: 2pqs_A
Length = 158
Score = 85.8 bits (212), Expect = 2e-22
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 24/135 (17%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
C LGL++ IP+K I+ASS + + + Y ++RL
Sbjct: 1 CTEPLGLKDNTIPNKQITASSYYKTWGLSAFSWFPY-------------------YARLD 41
Query: 62 HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
+ AW + N E+++++L VTG+ QG G Q Y V +
Sbjct: 42 NQGKFNAWTAQT---NSASEWLQIDLGSQKRVTGIITQGARDFGHIQ-YVAAYRVAYGDD 97
Query: 122 GFTKWRRWKGRNGKE 136
G W +K E
Sbjct: 98 G-VTWTEYKDPGASE 111
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family,
calcium- independent, blood clotting; 1.87A {Homo
sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A
Length = 160
Score = 83.4 bits (206), Expect = 1e-21
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 32/138 (23%)
Query: 2 CGGALGLENGVIPDKDISASSAHDS---SSVGPQFGSSYIFQISCIKRHNLIESLFLIHS 58
C LG+ENG I +K I+ASS S P
Sbjct: 2 CSTPLGMENGKIENKQITASSFKKSWWGDYWEPFRA------------------------ 37
Query: 59 RLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDF 118
RL AW K N+ +++E++L + +T + QG + + Y + + +
Sbjct: 38 RLNAQGRVNAWQAKA---NNNKQWLEIDLLKIKKITAIITQGC-KSLSSEMYVKSYTIHY 93
Query: 119 WRPGFTKWRRWKGRNGKE 136
G W+ ++ ++
Sbjct: 94 SEQGVE-WKPYRLKSSMV 110
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation
factor domain, heparin binding domain, angiogene protein
binding-cytokine complex; 2.65A {Homo sapiens} PDB:
1kmx_A 1vgh_A 2vgh_A
Length = 218
Score = 84.7 bits (209), Expect = 2e-21
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 32/137 (23%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
C ALG+E+G I I+ASS + ++ + R
Sbjct: 6 CMEALGMESGEIHSDQITASSQYS-TNWSAERS--------------------------R 38
Query: 62 HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQE-YAEEIVVDFWR 120
+ W P + E+I+V+L L VT V QG ++ Y + +D
Sbjct: 39 LNYPENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSS 95
Query: 121 PGFTKWRRWKGRNGKEV 137
G W K N +
Sbjct: 96 NG-EDWITIKEGNKPVL 111
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood
coagulation, calcium, DIS mutation, disulfide bond,
glycoprotein, hemophilia; 1.07A {Homo sapiens} PDB:
3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A
Length = 159
Score = 82.2 bits (203), Expect = 4e-21
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 31/138 (22%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSS--SVGPQFGSSYIFQISCIKRHNLIESLFLIHSR 59
C LG+E+ I D I+ASS + + P R
Sbjct: 5 CSMPLGMESKAISDAQITASSYFTNMFATWSPSKA------------------------R 40
Query: 60 LRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFW 119
L AW P+ N+ E+++V+ VTGV QG + L Y +E ++
Sbjct: 41 LHLQGRSNAWRPQV---NNPKEWLQVDFQKTMKVTGVTTQGV-KSLLTSMYVKEFLISSS 96
Query: 120 RPGFTKWRRWKGRNGKEV 137
+ G +W + +V
Sbjct: 97 QDG-HQWTLFFQNGKVKV 113
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental
protein, differentiation, glycoprotein, membrane,
neurogenesis, transmembrane; 1.95A {Homo sapiens}
Length = 325
Score = 81.8 bits (201), Expect = 1e-19
Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 31/137 (22%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
C LG+E+G I ++ ISASS + PQ R
Sbjct: 7 CNVPLGMESGRIANEQISASSTYSDGRWTPQQS--------------------------R 40
Query: 62 HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFG-NGLGQEYAEEIVVDFWR 120
+ W P + EY++V+L L ++T + QG Y + ++
Sbjct: 41 LHGDDNGWTPNL---DSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVST 97
Query: 121 PGFTKWRRWKGRNGKEV 137
G W ++ +V
Sbjct: 98 NG-EDWMVYRHGKNHKV 113
Score = 49.8 bits (118), Expect = 3e-08
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYA 111
S R + W P+ G E+++V+L V GV +QG G + +
Sbjct: 192 PSAARLVSSRSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFV 251
Query: 112 EEIVVDFWRPGFTKWRRWKGRNGKE 136
+ V + G W + ++
Sbjct: 252 RKFKVSYSLNGKD-WEYIQDPRTQQ 275
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis,
developmen protein, differentiation, glycoprotein,
heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A
3i97_A* 1kex_A
Length = 318
Score = 81.3 bits (200), Expect = 1e-19
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 32/137 (23%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
C ALG+E+G I I+ASS + ++ + R
Sbjct: 7 CMEALGMESGEIHSDQITASSQYS-TNWSAERS--------------------------R 39
Query: 62 HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQE-YAEEIVVDFWR 120
+ W P + E+I+V+L L VT V QG ++ Y + +D
Sbjct: 40 LNYPENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSS 96
Query: 121 PGFTKWRRWKGRNGKEV 137
G W K N +
Sbjct: 97 NG-EDWITIKEGNKPVL 112
Score = 48.6 bits (115), Expect = 8e-08
Identities = 11/80 (13%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 58 SRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVD 117
+R + W + +E+++++L + IV G+ +QG + + + +
Sbjct: 192 ENIRLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRE-NKVFMRKFKIG 250
Query: 118 FWRPGFTKWRRWKGRNGKEV 137
+ G W+ + ++
Sbjct: 251 YSNNGSD-WKMIMDDSKRKA 269
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 75.5 bits (185), Expect = 4e-17
Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 33/142 (23%)
Query: 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRL 60
C LG+ +G+I D ISASS + P RL
Sbjct: 292 PCSNMLGMLSGLIADSQISASSTQEYLW-SPSAA------------------------RL 326
Query: 61 RHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYAEEIV 115
+ W P+ G E+++V+L V GV +QG G + + +
Sbjct: 327 VS--SRSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFK 384
Query: 116 VDFWRPGFTKWRRWKGRNGKEV 137
V + G W + ++
Sbjct: 385 VSYSLNG-KDWEYIQDPRTQQP 405
Score = 53.2 bits (127), Expect = 3e-09
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 5/109 (4%)
Query: 30 GPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHD 89
P S I + + R + W P + EY++V+L
Sbjct: 138 VPLGMESGRIANEQISASSTYSDGRWTPQQSRLHGDDNGWTPNL---DSNKEYLQVDLRF 194
Query: 90 LHIVTGVQLQGRFG-NGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKEV 137
L ++T + QG Y + ++ G W ++ +V
Sbjct: 195 LTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGKNHKV 242
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 72.7 bits (178), Expect = 4e-16
Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 33/141 (23%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
C LG+ +G+I D ISASS + P RL
Sbjct: 412 CSNMLGMLSGLIADSQISASSTQEYLW-SPSAA------------------------RL- 445
Query: 62 HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNG-----LGQEYAEEIVV 116
+ W P+ G E+++V+L V GV +QG G + + + V
Sbjct: 446 -VSSRSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKV 504
Query: 117 DFWRPGFTKWRRWKGRNGKEV 137
+ G W + ++
Sbjct: 505 SYSLNG-KDWEYIQDPRTQQP 524
Score = 52.3 bits (125), Expect = 5e-09
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 36 SYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTG 95
S I + + R + W P + EY++V+L L ++T
Sbjct: 263 SGRIANEQISASSTYSDGRWTPQQSRLHGDDNGWTPNL---DSNKEYLQVDLRFLTMLTA 319
Query: 96 VQLQGRFGNGLGQ-EYAEEIVVDFWRPGFTKWRRWKGRNGKEV 137
+ QG Y + ++ G W ++ +V
Sbjct: 320 IATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYRHGKNHKV 361
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion;
1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A*
2vme_A*
Length = 257
Score = 67.0 bits (163), Expect = 1e-14
Identities = 14/126 (11%), Positives = 35/126 (27%), Gaps = 25/126 (19%)
Query: 6 LGLENGV-IPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDK 64
G + + ++ +S+ +++ G + N S R D
Sbjct: 5 AGSVSCLANALLNLRSSTDYNADH-GVKNS-----------ILNFSNS----KDASRFD- 47
Query: 65 NGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFT 124
+W D +++I + + QGR ++ + +
Sbjct: 48 GSESWSSSV---LDKNQFIVAGSDSVKHFVAISTQGRGD---HDQWVTSYKLRYTLDN-V 100
Query: 125 KWRRWK 130
W +
Sbjct: 101 NWVEYN 106
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 67.9 bits (165), Expect = 2e-14
Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 39 FQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQL 98
S K+ +RL AW K N+ +++++++L + +T +
Sbjct: 505 ITASSFKKSWWGNYWEPFLARLNAQGRVNAWQAKA---NNNNQWLQIDLLKIKKITAIVT 561
Query: 99 QGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGRNGKE 136
QG + + Y + + + G T W+ ++ ++
Sbjct: 562 QGC-KSLSSEMYVKSYTIHYSDQG-TDWKPYREKSSMV 597
Score = 47.5 bits (112), Expect = 2e-07
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
K + +I+V++ ++TG+Q QG + L Y E V
Sbjct: 360 ARLNNGGSYNAWIAEKLSTEFNPEPWIQVDMQKEVLLTGIQTQGA-KHYLKPYYTTEFCV 418
Query: 117 DFWRPGFTKWRRWKGRNGKE 136
+ WR +KG + +
Sbjct: 419 AYSLDR-KNWRIFKGNSTRN 437
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 66.4 bits (161), Expect = 7e-14
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVV 116
+RL AW P+ N+ E+++V+ VTGV QG + L Y +E ++
Sbjct: 645 KARLHLQGRSNAWRPQV---NNPKEWLQVDFQKTMKVTGVTTQGV-KSLLTSMYVKEFLI 700
Query: 117 DFWRPGFTKWRRWKGRNGKEV 137
+ G +W + +V
Sbjct: 701 SSSQDG-HQWTLFFQNGKVKV 720
Score = 48.3 bits (114), Expect = 1e-07
Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 33/137 (24%)
Query: 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRL 60
C LG+ +G I D I+AS + + +RL
Sbjct: 458 KCQTPLGMASGHIRDFQITASGQYGQWAP--------------------------KLARL 491
Query: 61 RHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
+ + AW + +I+V+L I+ G++ QG Y + ++ +
Sbjct: 492 HYSGSINAWST-----KEPFSWIKVDLLAPMIIHGIKTQGARQKF-SSLYISQFIIMYSL 545
Query: 121 PGFTKWRRWKGRNGKEV 137
G KW+ ++G + +
Sbjct: 546 DG-KKWQTYRGNSTGTL 561
>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin
domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium
discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A*
Length = 254
Score = 63.9 bits (155), Expect = 2e-13
Identities = 14/122 (11%), Positives = 29/122 (23%), Gaps = 25/122 (20%)
Query: 13 IPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPK 72
+ S+ ++ + L ++ AWC
Sbjct: 13 NAQCHLRTSTNYNGVH-TQFNSA-----------------LNYKNNGTNTIDGSEAWCSS 54
Query: 73 HMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRPGFTKWRRWKGR 132
D ++YI V LQGR ++ + + W ++
Sbjct: 55 I---VDTNQYIVAGCEVPRTFMCVALQGRGDAD---QWVTSYKIRYSLDN-VSWFEYRNG 107
Query: 133 NG 134
Sbjct: 108 AA 109
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 55.4 bits (133), Expect = 4e-10
Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 29/137 (21%)
Query: 1 YCGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRL 60
C G LG+ +G+I D I++S+ D + + +
Sbjct: 294 PCSGMLGMVSGLISDSQITSSNQGDRNWMP---------------------------ENI 326
Query: 61 RHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
R + W + +E+++++L + IV G+ +QG + + + + + +
Sbjct: 327 RLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGG-KHRENKVFMRKFKIGYSN 385
Query: 121 PGFTKWRRWKGRNGKEV 137
G + W+ + ++
Sbjct: 386 NG-SDWKMIMDDSKRKA 401
Score = 37.3 bits (86), Expect = 7e-04
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 57 HSRLRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNG-LGQEYAEEIV 115
R R + W P + E+I+V+L L VT V QG + Y +
Sbjct: 167 AERSRLNYPENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYK 223
Query: 116 VDFWRPGFTKWRRWKGRNGKEV 137
+D G W K N +
Sbjct: 224 IDVSSNGED-WITIKEGNKPVL 244
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 7e-04
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 31/90 (34%)
Query: 23 AHDSSSVGPQFGSSYIFQISCIKRH----------NLIESLFL----IHSRLRHDKNGGA 68
DS + P + Y + I H L +FL + ++RHD A
Sbjct: 458 TFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD--STA 513
Query: 69 WCPKHMVGNDGHEYIEVNLHDL-----HIV 93
W + N L L +I
Sbjct: 514 WNASGSILNT--------LQQLKFYKPYIC 535
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.25
Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 37/133 (27%)
Query: 6 LGLE-NGVIPDKDISASSAHDSSSVG---PQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
+G+ P+ + S DS P S + IS + + + + + +S L
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVP----SPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 62 HDKNGGAWCPKHMVGNDGHEYIE-VNLHDLHIVTG--VQLQG--------RFGNGLGQ-- 108
K I VN +V+G L G + +GL Q
Sbjct: 362 AGK---------------QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 109 -EYAEEIVVDFWR 120
++E + R
Sbjct: 407 IPFSERKLKFSNR 419
Score = 27.7 bits (61), Expect = 1.7
Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 47/118 (39%)
Query: 9 ENGVIPDKDISASSAHDSSSVGPQFGSSY--------IFQISCIKRHNLIESLFLIHSRL 60
G+IP A H S+G Y + I +L+E ++ R
Sbjct: 1749 SKGLIPADATFA--GH---SLG-----EYAALASLADVMSIE-----SLVE---VVFYR- 1789
Query: 61 RHDKNGGAW---CPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIV 115
G P+ +G + I +N GR QE + +V
Sbjct: 1790 -----GMTMQVAVPRDELGRSNYGMIAIN------------PGRVAASFSQEALQYVV 1830
>3d23_B 3C-like proteinase; main protease, ATP-binding, endonuclease,
exonuclease, helic hydrolase, membrane, metal-binding,
nuclease; HET: 3IH; 2.50A {Human coronavirus}
Length = 302
Score = 26.9 bits (59), Expect = 2.0
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 69 WCPKHMVGNDG--------HEYIEVNLHDLHIVTG 95
+CP+H++ + V L D I++G
Sbjct: 39 YCPRHVICSSSNMNEPDYSALLCRVTLGDFTIMSG 73
>2zu2_A 3C-like proteinase; protease-inhibitor complex, hydrolase,
metal-binding, protea protease, hydrolase-hydrolase
inhibitor complex; 1.80A {Human coronavirus} PDB:
1p9s_A
Length = 302
Score = 26.5 bits (58), Expect = 2.9
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 69 WCPKHMVGND-------GHEYIEVNLHDLHIVTG 95
+CP+H++ ++ HEY + LH+ I++G
Sbjct: 37 YCPRHVIASNTTSAIDYDHEYSIMRLHNFSIISG 70
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein.,
structural genomics, PSI, protein structure initiative;
2.60A {Methanosarcina mazei}
Length = 446
Score = 26.5 bits (57), Expect = 3.3
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 13 IPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLRHDKNGGAWCPK 72
+ K IS + D ++ Q S IF + + + R K +
Sbjct: 74 VSQKRISVAGTKDKRALTTQKIS--IFDTDASEIEKIHLKDIELKVLGRSRK---SVELG 128
Query: 73 HMVGN 77
+ GN
Sbjct: 129 DLWGN 133
>1lvo_A Replicase, hydrolase domain; 3C like, corona, proteinase,
chymotrypsin, cysteine histidine DYAD, beta barrel;
1.96A {Transmissible gastroenteritis virus} SCOP:
b.47.1.4 PDB: 1p9u_A 2amp_A*
Length = 302
Score = 26.5 bits (58), Expect = 3.7
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 15/47 (31%)
Query: 69 WCPKHMVGNDG-------HEYIEVNLHDLHI--------VTGVQLQG 100
CP+H++ +D +E V LH+ + V + +G
Sbjct: 37 ICPRHVIASDTTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKG 83
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate
binding module, toxin, secreted, virulence, hydrolase,
glycosidase; HET: MSE BTB; 1.45A {Clostridium
perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Length = 192
Score = 25.0 bits (54), Expect = 8.4
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 63 DKNGGAWCPKHMVGNDGH-EYIEVNLHDLHIVTGVQL-QGRFGNGLGQ 108
D N G W E+I ++L + G++ G+ G G
Sbjct: 47 DDNTGVWYKTLNGDTSLAGEFIGLDLGKEIKLDGIRFVIGKNGGGSSD 94
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module,
sugar-binding protein, pectin, plant cell WALL,
galacturonic acid; 1.35A {Yersinia enterocolitica} PDB:
2jd9_A
Length = 145
Score = 24.7 bits (54), Expect = 9.3
Identities = 2/33 (6%), Positives = 11/33 (33%)
Query: 78 DGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEY 110
G ++++ L + + + ++
Sbjct: 41 SGESWVQLELDKEQSIENILIVPFKPTERKLKF 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.457
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,240,800
Number of extensions: 121014
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 34
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)