RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17120
(137 letters)
>d1czsa_ b.18.1.2 (A:) C2 domain of factor V {Human (Homo sapiens)
[TaxId: 9606]}
Length = 160
Score = 55.2 bits (132), Expect = 4e-11
Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 25/125 (20%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
C LG+ENG I +K I+ASS S G + +RL
Sbjct: 2 CSTPLGMENGKIENKQITASSFKKSWW-GDYWEPF--------------------RARLN 40
Query: 62 HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
AW K N+ +++E++L + +T + QG + Y + + +
Sbjct: 41 AQGRVNAWQAKA---NNNKQWLEIDLLKIKKITAIITQGCKSLS-SEMYVKSYTIHYSEQ 96
Query: 122 GFTKW 126
G
Sbjct: 97 GVEWK 101
>d1d7pm_ b.18.1.2 (M:) C2 domain of factor VIII {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 54.8 bits (131), Expect = 5e-11
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 31/138 (22%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSS--SVGPQFGSSYIFQISCIKRHNLIESLFLIHSR 59
C LG+E+ I D I+ASS + + P R
Sbjct: 4 CSMPLGMESKAISDAQITASSYFTNMFATWSPSKA------------------------R 39
Query: 60 LRHDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFW 119
L AW P+ N+ E+++V+ VTGV QG + L Y +E ++
Sbjct: 40 LHLQGRSNAWRPQV---NNPKEWLQVDFQKTMKVTGVTTQGV-KSLLTSMYVKEFLISSS 95
Query: 120 RPGFTKWRRWKGRNGKEV 137
+ G +W + +V
Sbjct: 96 QDG-HQWTLFFQNGKVKV 112
>d2qqia2 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 155
Score = 53.4 bits (127), Expect = 2e-10
Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 30/129 (23%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
C ALG+E+G I I+ASS + ++ R R
Sbjct: 3 CMEALGMESGEIHSDQITASSQYSTNWS---------------------------AERSR 35
Query: 62 HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
+ W P + E+I+V+L L VT V QG ++Y +
Sbjct: 36 LNYPENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSS 92
Query: 122 GFTKWRRWK 130
W K
Sbjct: 93 NGEDWITIK 101
>d1sddb3 b.18.1.2 (B:1863-2024) C2 domain of factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 162
Score = 52.5 bits (125), Expect = 4e-10
Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 29/133 (21%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
C +GL G+I D I AS P+ RL
Sbjct: 4 CKMPMGLSTGLIADSQIQASEFWGYW--EPKLA------------------------RLN 37
Query: 62 HDKNGGAWCPKHMVG-NDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWR 120
+ + AW + + + +I+V++ ++TG+Q QG + L Y E V +
Sbjct: 38 NGGSYNAWIAEKLSTEFNPEPWIQVDMQKEVLLTGIQTQGA-KHYLKPYYTTEFCVAYSL 96
Query: 121 PGFTKWRRWKGRN 133
WR +KG +
Sbjct: 97 DR-KNWRIFKGNS 108
>d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 46.0 bits (108), Expect = 9e-08
Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 28/125 (22%)
Query: 2 CGGALGLENGVIPDKDISASSAHDSSSVGPQFGSSYIFQISCIKRHNLIESLFLIHSRLR 61
C G LG+ +G+I D I++S+ D + + +R
Sbjct: 1 CSGMLGMVSGLISDSQITSSNQGDRNWMP---------------------------ENIR 33
Query: 62 HDKNGGAWCPKHMVGNDGHEYIEVNLHDLHIVTGVQLQGRFGNGLGQEYAEEIVVDFWRP 121
+ W + +E+++++L + IV G+ +QG + + + + + +
Sbjct: 34 LVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGG-KHRENKVFMRKFKIGYSNN 92
Query: 122 GFTKW 126
G
Sbjct: 93 GSDWK 97
>d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro,
putative coronavirus nsp2) {SARS coronavirus [TaxId:
227859]}
Length = 300
Score = 29.8 bits (67), Expect = 0.088
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 69 WCPKHMVGNDG--------HEYIEVNLHDLHIVTG-VQLQ 99
+CP+H++ I + H + G VQL+
Sbjct: 36 YCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLR 75
>d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
putative coronavirus nsp2) {Human coronavirus 229E
[TaxId: 11137]}
Length = 300
Score = 29.8 bits (67), Expect = 0.100
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 69 WCPKHMVGND-------GHEYIEVNLHDLHIVTG 95
+CP+H++ ++ HEY + LH+ I++G
Sbjct: 37 YCPRHVIASNTTSAIDYDHEYSIMRLHNFSIISG 70
>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
putative coronavirus nsp2) {Transmissible
gastroenteritis virus [TaxId: 11149]}
Length = 299
Score = 28.6 bits (64), Expect = 0.24
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 15/47 (31%)
Query: 69 WCPKHMVGNDG-------HEYIEVNLHDLHI--------VTGVQLQG 100
CP+H++ +D +E V LH+ + V + +G
Sbjct: 37 ICPRHVIASDTTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKG 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.457
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 560,952
Number of extensions: 23682
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 12
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.9 bits)