BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17123
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7
PE=3 SV=1
Length = 103
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 48/53 (90%)
Query: 15 KDRKRKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLR 67
K++K+KESILDLSK++DK IRVKF GGRE SGILKGFDPLLNLVLD T EY+R
Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMR 56
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7
PE=1 SV=1
Length = 103
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 48/53 (90%)
Query: 15 KDRKRKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLR 67
K++K+KESILDLSK++DK IRVKF GGRE SGILKGFDPLLNLVLD T EY+R
Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMR 56
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 12 AETKDRKRKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLR 67
++ +R RKESILDLS++ D+ I+ F GGR+ +GILKGFD L+NLVLD+ E LR
Sbjct: 14 SQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLR 69
>sp|Q54HF6|LSM7_DICDI Probable U6 snRNA-associated Sm-like protein LSm7
OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1
Length = 97
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%)
Query: 18 KRKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLR 67
+KESILDL KFL K I VKF GGRE GILKG+D L+N+ LD T E++R
Sbjct: 7 PKKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIR 56
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 38/48 (79%)
Query: 19 RKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYL 66
++E+ILDL+K+ D IRVK GG+ G+LKG+D L+NLVLD+T EY+
Sbjct: 23 KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYM 70
>sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1
SV=1
Length = 76
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEY 65
+L KF+DK + +K GGR GIL+GFDP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM 48
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1
SV=1
Length = 76
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEY 65
+L KF+DK + +K GGR GIL+GFDP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM 48
>sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3
SV=1
Length = 76
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEY 65
+L KF+DK + +K GGR GIL+GFDP +NLV+D E
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM 48
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
++ K++DK + +K GGR +GIL+GFDP +N+VLD+T E
Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVE 47
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEY 65
+L K++DK + +K G R SGIL+GFDP +N+V+D EY
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEY 48
>sp|A8MWD9|RUXGL_HUMAN Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens
PE=2 SV=2
Length = 76
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEY 65
+L KF DK +K GGR GIL+GFDP +NLV+D E
Sbjct: 8 ELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEM 48
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
DL K++DK +++K R +G L+GFD +NLV+DNT E
Sbjct: 9 DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE 48
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 20 KESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVT 69
K++ DL+K LDK + +K G R GIL+GFD +N+ L +T E + T
Sbjct: 5 KQADPDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPT 54
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1
Length = 77
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
+L K++DK I + G R+ +GIL+G+D LN+VLD+ E
Sbjct: 6 ELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAME 45
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
DL K+LD+ + V+ G R+ G+L+G+D LN+VL+++ E
Sbjct: 8 DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE 47
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
L K++DK +++ R G L+GFD +NLV+DNT E
Sbjct: 10 LKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVE 48
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
L++ L+ + V+ GGRE G L+G+D +NLVLDN E
Sbjct: 9 LNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEE 47
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSV-QVRSWCSIVR 83
L ++++ + V + GR G LKGFD +NL+LD + E + + Q V QV IVR
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVR 63
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSV-QVRSWCSIVR 83
L ++++ + V + GR G LKGFD +NL+LD + E + + Q V QV IVR
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVR 63
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSV-QVRSWCSIVR 83
L ++++ + V + GR G LKGFD +NL+LD + E + + Q V QV IVR
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVR 63
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSV-QVRSWCSIVR 83
L ++++ + V + GR G LKGFD +NL+LD + E + + Q V QV IVR
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVR 63
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
L+ LD + V+ G RE G LKG+D +NLVLDN E
Sbjct: 9 LNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEE 47
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
L+ LD + V+ G RE G LKG+D +NLVLDN E
Sbjct: 9 LNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEE 47
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
L+ LD + V+ G RE G LKG+D +NLVLDN E
Sbjct: 9 LNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEE 47
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYL----RVTYQSVQVRS 77
L L + + + G RE SGIL+G+D +N+VL N +E + + Y V VR
Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDRVLVRG 69
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYL 66
L L + + + G RE SGIL+G+D +N+VL N +E +
Sbjct: 14 LKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEII 54
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 24 LDLSKF-LDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRV 68
LDL + LD+++ VK G RE +G L +D LN+VL + E + +
Sbjct: 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTI 56
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
L+ L+ + V+ G RE G+L+G+D +NLVLD E
Sbjct: 9 LNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEE 47
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
L L+ + +K G RE G+LK FD +NLVL++ E
Sbjct: 18 LGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE 56
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 21 ESILDLSKF-LDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYL 66
E+ LDL K LD+ + +K G R G L+ FD N+VL + E +
Sbjct: 2 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETI 48
>sp|A9CTE0|LSM2_ENTBH Probable U6 snRNA-associated Sm-like protein LSm2
OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3
SV=1
Length = 97
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 30 LDKVIRVKFAGGRECSGILKGFDPLLNLVLDN-----TTEYLRVTYQSVQVRSWCSI--- 81
L+ I V SGILK DP LN+ ++N T E++++ +S+ CSI
Sbjct: 11 LNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKIN-KSITNIQLCSIRGS 69
Query: 82 -VRRQESRRN 90
++ E ++N
Sbjct: 70 AIKSVELKKN 79
>sp|Q9A0R7|Y653_STRP1 UPF0052 protein SPy_0653/M5005_Spy0540 OS=Streptococcus pyogenes
serotype M1 GN=SPy_0653 PE=3 SV=1
Length = 325
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQV 75
D+ KF ++V + +F E G L G PL NL++ +E TY ++Q+
Sbjct: 66 DMPKFYERVFQYRF---NESDGALAG-HPLGNLIIAGISEMQGSTYNAIQI 112
>sp|Q8P1T7|Y714_STRP8 UPF0052 protein spyM18_0714 OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=spyM18_0714 PE=3 SV=1
Length = 325
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQV 75
D+ KF ++V + +F E G L G PL NL++ +E TY ++Q+
Sbjct: 66 DMPKFYERVFQYRF---NESDGALAG-HPLGNLIIAGISEMQGSTYNAIQI 112
>sp|Q5XD18|Y560_STRP6 UPF0052 protein M6_Spy0560 OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=M6_Spy0560 PE=3
SV=1
Length = 325
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQV 75
D+ KF ++V + +F E G L G PL NL++ +E TY ++Q+
Sbjct: 66 DMPKFYERVFQYRF---NESDGALAG-HPLGNLIIAGISEMQGSTYNAIQI 112
>sp|P0DG79|Y463_STRPQ UPF0052 protein SPs1392 OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=SPs1392 PE=3 SV=1
Length = 325
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQV 75
D+ KF ++V + +F E G L G PL NL++ +E TY ++Q+
Sbjct: 66 DMPKFYERVFQYRF---NESDGALAG-HPLGNLIIAGISEMQGSTYNAIQI 112
>sp|P0DG78|Y463_STRP3 UPF0052 protein SpyM3_0463 OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=SpyM3_0463 PE=3 SV=1
Length = 325
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQV 75
D+ KF ++V + +F E G L G PL NL++ +E TY ++Q+
Sbjct: 66 DMPKFYERVFQYRF---NESDGALAG-HPLGNLIIAGISEMQGSTYNAIQI 112
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3
OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 21 ESILDLSKF-LDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVT 69
E LDL + LD+ I VK RE G L +D LN++L + E ++V
Sbjct: 10 EEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVV 59
>sp|A5DRQ6|LSM6_LODEL U6 snRNA-associated Sm-like protein LSm6 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=LSM6 PE=3 SV=2
Length = 80
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 12 AETKDRKRKESILDLSKFLDKVI----RVKFAGGRECSGILKGFDPLLNLVLDNTTEYL 66
AE+ DR +D SKFL +I +VK G E G L+ D +N+ L+N E +
Sbjct: 4 AESLDR------IDPSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVI 56
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1
Length = 94
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 24 LDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
+ L+ F+++ ++V GR G LKGFD NL+L ++ E
Sbjct: 1 MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>sp|O42978|LSM5_SCHPO U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm5 PE=1 SV=2
Length = 80
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 42 RECSGILKGFDPLLNLVLDNTTEYLRVT 69
RE +G L GFD +N+VL + TEY VT
Sbjct: 27 REFAGTLVGFDDYVNIVLKDVTEYDTVT 54
>sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F OS=Arabidopsis
thaliana GN=At4g30220 PE=2 SV=1
Length = 88
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYL 66
L+ K + VK G E G L D +NL L NT EY+
Sbjct: 12 LNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYI 52
>sp|A7E3S5|WDR4_BOVIN tRNA (guanine-N(7)-)-methyltransferase subunit WDR4 OS=Bos taurus
GN=WDR4 PE=2 SV=1
Length = 414
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 34 IRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQ 74
+RV +A C+G+ GF L DN T YL+ + +Q
Sbjct: 341 VRVNWAMLEGCAGVDSGFSSLYKATCDNMTTYLKKKEERLQ 381
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 1 MAAVNTTTDAGAETKDRKRKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLD 60
M+++ + +G+E + LS+ + + V+ G E G L+ D +N+VLD
Sbjct: 1 MSSIKKESSSGSENTGPS-----VFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLD 55
Query: 61 NTTEYL 66
T E++
Sbjct: 56 ETKEFV 61
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYL 66
+ K +++ + + RE G L GFD +N++L++ E+L
Sbjct: 12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWL 52
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
L++ L + V+ GGRE G L G+D +NLVL + E
Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEE 47
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVR 83
L ++D+ + V G++ GIL+ FD NL+L T E + V + IVR
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVR 73
>sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm6 PE=1 SV=1
Length = 75
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 26 LSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYL 66
L+K + K + ++ + G + GIL D +NL L+ T EY+
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYV 49
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 21 ESILDLSKF-LDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
E LDL + LD+ I VK RE G L +D LN++L + E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 21 ESILDLSKF-LDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
E LDL + LD+ I VK RE G L +D LN++L + E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3
PE=3 SV=3
Length = 102
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 21 ESILDLSKF-LDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTE 64
E LDL + LD+ I VK RE G L +D LN++L + E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,772,357
Number of Sequences: 539616
Number of extensions: 1319578
Number of successful extensions: 2962
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2914
Number of HSP's gapped (non-prelim): 59
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)