Query psy17123
Match_columns 105
No_of_seqs 126 out of 1019
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:28:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emk_C U6 snRNA-associated SM- 99.9 1.1E-26 3.7E-31 158.5 9.8 88 11-98 13-103 (113)
2 3bw1_A SMX4 protein, U6 snRNA- 99.9 1.8E-24 6.1E-29 143.3 10.8 84 15-98 4-90 (96)
3 1h64_1 SnRNP SM-like protein; 99.9 4.1E-24 1.4E-28 135.3 9.6 72 21-96 4-75 (75)
4 3s6n_G Small nuclear ribonucle 99.9 1.9E-24 6.5E-29 137.6 7.6 71 22-96 5-75 (76)
5 1i4k_A Putative snRNP SM-like 99.9 6.1E-24 2.1E-28 135.0 9.5 73 21-97 4-76 (77)
6 4emk_A U6 snRNA-associated SM- 99.9 1.1E-23 3.7E-28 139.6 10.9 78 17-97 16-93 (94)
7 1ljo_A Archaeal SM-like protei 99.9 8.4E-24 2.9E-28 134.5 9.4 72 21-96 5-77 (77)
8 1i8f_A Putative snRNP SM-like 99.9 8.9E-24 3E-28 135.8 9.6 75 17-96 7-81 (81)
9 1mgq_A SM-like protein; LSM, R 99.9 1.1E-23 3.6E-28 136.1 9.9 74 16-93 10-83 (83)
10 1th7_A SnRNP-2, small nuclear 99.9 1.2E-23 4E-28 135.1 9.7 73 20-96 8-80 (81)
11 4emk_B U6 snRNA-associated SM- 99.9 5.2E-24 1.8E-28 135.1 7.3 71 21-95 4-74 (75)
12 1d3b_B Protein (small nuclear 99.9 2E-23 6.8E-28 136.4 9.6 77 23-99 6-88 (91)
13 3s6n_F Small nuclear ribonucle 99.9 2.4E-23 8.2E-28 135.6 9.5 76 20-99 5-80 (86)
14 1d3b_A Protein (small nuclear 99.9 1E-22 3.5E-27 129.4 9.6 71 21-95 5-75 (75)
15 3s6n_E Small nuclear ribonucle 99.9 3.5E-23 1.2E-27 136.6 6.9 77 16-95 11-91 (92)
16 4emg_A Probable U6 snRNA-assoc 99.9 2.2E-22 7.7E-27 132.7 10.2 76 19-94 7-91 (93)
17 1n9r_A SMF, small nuclear ribo 99.9 9.3E-23 3.2E-27 134.7 8.2 72 20-95 20-92 (93)
18 2fwk_A U6 snRNA-associated SM- 99.9 4.3E-23 1.5E-27 141.8 6.7 80 19-98 26-116 (121)
19 4emh_A Probable U6 snRNA-assoc 99.9 3.1E-22 1.1E-26 134.9 9.0 75 21-98 16-90 (105)
20 1b34_A Protein (small nuclear 99.9 1.4E-21 4.8E-26 133.9 9.1 72 22-97 3-74 (119)
21 3pgw_B SM B; protein-RNA compl 99.9 2.3E-21 7.8E-26 145.8 10.4 79 23-102 6-90 (231)
22 1b34_B Protein (small nuclear 99.9 2.5E-21 8.7E-26 132.3 8.9 83 15-97 21-115 (118)
23 2y9a_D Small nuclear ribonucle 99.8 1.9E-20 6.5E-25 129.7 9.2 73 21-97 5-77 (126)
24 1m5q_A SMAP3, small nuclear ri 99.8 8.4E-20 2.9E-24 127.1 7.9 67 23-97 2-68 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.1 1.6E-10 5.4E-15 75.2 7.7 70 21-100 7-77 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.1 0.004 1.4E-07 40.3 8.3 71 27-97 9-85 (88)
27 2fb7_A SM-like protein, LSM-14 96.9 0.0022 7.6E-08 42.0 5.5 74 24-97 12-91 (95)
28 2qtx_A Uncharacterized protein 96.8 0.0024 8.1E-08 39.9 4.9 34 28-61 22-55 (71)
29 2ylb_A Protein HFQ; RNA-bindin 96.7 0.0022 7.6E-08 40.2 4.3 54 25-95 13-68 (74)
30 1u1s_A HFQ protein; SM-like ba 96.6 0.0023 7.8E-08 41.0 4.0 30 30-59 18-47 (82)
31 1kq1_A HFQ, HOST factor for Q 96.5 0.0058 2E-07 38.6 5.2 35 26-60 12-48 (77)
32 3ahu_A Protein HFQ; SM-like mo 96.4 0.0041 1.4E-07 39.4 4.3 35 26-60 16-52 (78)
33 3sb2_A Protein HFQ; SM-like, R 96.3 0.0052 1.8E-07 39.0 4.3 33 26-58 13-47 (79)
34 2y90_A Protein HFQ; RNA-bindin 95.8 0.0091 3.1E-07 39.7 3.9 34 26-59 14-49 (104)
35 1y96_B Gemin7, SIP3, GEM-assoc 95.6 0.043 1.5E-06 35.2 6.1 64 20-92 18-82 (85)
36 2vc8_A Enhancer of mRNA-decapp 95.3 0.035 1.2E-06 35.6 5.0 62 28-96 6-69 (84)
37 3hfo_A SSR3341 protein; HFQ, S 95.1 0.035 1.2E-06 34.4 4.6 57 22-93 10-68 (70)
38 4a53_A EDC3; RNA binding prote 94.8 0.038 1.3E-06 37.8 4.5 39 24-63 5-45 (125)
39 1ycy_A Conserved hypothetical 94.8 0.17 5.9E-06 31.0 6.9 60 25-93 10-69 (71)
40 3hfn_A ASL2047 protein; HFQ, S 94.7 0.057 1.9E-06 33.6 4.6 58 21-93 11-70 (72)
41 1ib8_A Conserved protein SP14. 91.5 0.22 7.4E-06 34.9 4.1 42 16-59 90-135 (164)
42 3rux_A BIRA bifunctional prote 91.1 0.3 1E-05 36.5 4.8 32 30-61 223-254 (270)
43 2eay_A Biotin [acetyl-COA-carb 82.6 0.83 2.8E-05 33.2 2.8 30 30-61 187-216 (233)
44 2rm4_A CG6311-PB, DM EDC3; enh 81.2 9.1 0.00031 25.0 7.4 64 27-96 8-72 (103)
45 2ej9_A Putative biotin ligase; 79.6 2.6 8.7E-05 30.6 4.6 32 29-61 190-221 (237)
46 1bia_A BIRA bifunctional prote 77.1 3.6 0.00012 30.9 4.9 31 30-61 272-302 (321)
47 2dxu_A Biotin--[acetyl-COA-car 75.6 2.3 7.8E-05 30.9 3.3 30 30-61 188-217 (235)
48 3rkx_A Biotin-[acetyl-COA-carb 72.8 4.1 0.00014 30.9 4.2 31 30-61 278-308 (323)
49 3bfm_A Biotin protein ligase-l 72.8 5.3 0.00018 28.7 4.7 27 30-61 193-219 (235)
50 2xk0_A Polycomb protein PCL; t 67.7 17 0.00059 22.1 5.4 25 30-54 18-42 (69)
51 3fb9_A Uncharacterized protein 63.6 11 0.00036 24.1 4.1 32 20-51 14-49 (90)
52 4hcz_A PHD finger protein 1; p 59.5 14 0.00049 21.7 3.9 26 30-55 6-31 (58)
53 2e12_A SM-like motif, hypothet 59.2 9.3 0.00032 24.7 3.2 17 32-48 29-45 (101)
54 2eqj_A Metal-response element- 50.1 25 0.00086 21.2 3.9 25 30-54 16-40 (66)
55 3by7_A Uncharacterized protein 49.4 50 0.0017 21.3 7.9 59 35-95 7-76 (100)
56 1ky9_A Protease DO, DEGP, HTRA 48.6 25 0.00086 27.6 4.9 30 32-61 111-140 (448)
57 4a8c_A Periplasmic PH-dependen 48.5 26 0.00089 27.3 4.9 31 32-62 88-118 (436)
58 1x4r_A PARP14 protein; WWE dom 47.1 1.2 4.2E-05 29.0 -2.5 20 45-64 34-53 (99)
59 2qqr_A JMJC domain-containing 43.0 29 0.00099 23.0 3.8 23 30-52 8-30 (118)
60 3stj_A Protease DEGQ; serine p 40.0 37 0.0012 25.6 4.4 30 32-61 88-117 (345)
61 3sti_A Protease DEGQ; serine p 37.7 38 0.0013 24.3 4.1 30 32-61 88-117 (245)
62 3pv2_A DEGQ; trypsin fold, PDZ 37.3 34 0.0012 26.8 4.0 30 32-61 102-131 (451)
63 1y8t_A Hypothetical protein RV 35.4 50 0.0017 24.3 4.4 30 31-60 63-92 (324)
64 3lgi_A Protease DEGS; stress-s 34.0 59 0.002 22.7 4.5 29 32-60 77-105 (237)
65 1sg5_A ORF, hypothetical prote 33.7 20 0.00067 22.4 1.7 56 24-91 18-73 (86)
66 3tjo_A Serine protease HTRA1; 33.6 61 0.0021 22.7 4.5 30 31-60 86-115 (231)
67 2m0o_A PHD finger protein 1; t 32.8 22 0.00074 22.2 1.7 26 30-55 29-54 (79)
68 2xdp_A Lysine-specific demethy 32.8 53 0.0018 21.9 3.8 23 30-52 67-89 (123)
69 1te0_A Protease DEGS; two doma 32.7 57 0.002 23.9 4.4 30 32-61 66-95 (318)
70 1lcy_A HTRA2 serine protease; 32.6 60 0.002 24.0 4.5 30 32-61 71-100 (325)
71 2qqr_A JMJC domain-containing 30.8 61 0.0021 21.4 3.8 23 30-52 66-88 (118)
72 3tee_A Flagella basal BODY P-r 29.7 35 0.0012 24.5 2.7 21 30-50 170-190 (219)
73 3qx1_A FAS-associated factor 1 29.2 36 0.0012 20.3 2.3 22 32-53 8-29 (84)
74 2e5p_A Protein PHF1, PHD finge 27.8 92 0.0031 18.8 3.9 26 30-55 12-37 (68)
75 2o1a_A Iron-regulated surface 27.4 51 0.0018 22.3 3.1 37 23-59 35-72 (142)
76 3num_A Serine protease HTRA1; 25.4 1.1E+02 0.0039 22.4 5.0 29 32-60 70-98 (332)
77 3qo6_A Protease DO-like 1, chl 25.4 79 0.0027 23.6 4.1 29 32-60 77-105 (348)
78 2w5e_A Putative serine proteas 25.1 1.5E+02 0.0051 19.8 5.2 26 32-59 43-68 (163)
79 3kl9_A PEPA, glutamyl aminopep 24.5 53 0.0018 25.0 3.0 25 26-50 94-118 (355)
80 2wr8_A Putative uncharacterize 24.5 64 0.0022 24.0 3.3 21 41-61 171-191 (259)
81 4fln_A Protease DO-like 2, chl 24.0 72 0.0025 26.0 3.8 29 32-60 97-126 (539)
82 2dir_A Thump domain-containing 23.3 74 0.0025 19.4 3.1 23 31-53 74-96 (98)
83 2zbv_A Uncharacterized conserv 23.1 68 0.0023 23.8 3.3 20 41-60 167-186 (263)
84 2p5z_X Type VI secretion syste 21.4 1.2E+02 0.0041 23.6 4.6 30 24-53 56-96 (491)
85 1mhn_A SurviVal motor neuron p 21.2 95 0.0032 17.2 3.0 24 30-53 6-30 (59)
86 2dzk_A UBX domain-containing p 20.6 77 0.0026 20.0 2.8 21 32-52 14-34 (109)
87 2e5q_A PHD finger protein 19; 20.5 90 0.0031 18.5 2.8 25 30-54 10-34 (63)
No 1
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.94 E-value=1.1e-26 Score=158.47 Aligned_cols=88 Identities=42% Similarity=0.637 Sum_probs=57.8
Q ss_pred CCCccccccccchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCce---eeeeeEEeeEEEcCCc
Q psy17123 11 GAETKDRKRKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQ---SVQVRSWCSIVRRQES 87 (105)
Q Consensus 11 ~~~~~~~~~~~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~---~~~~~~lg~vlIRG~~ 87 (105)
..++.++|+++++..|.++++++|+|+|+|||.|+|+|+|||+||||+|+||+|++.+++. ....+.+|+++|||++
T Consensus 13 ~~~~~~~~kke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~n 92 (113)
T 4emk_C 13 SSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTT 92 (113)
T ss_dssp -------------------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTT
T ss_pred CCCCccCCccchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCe
Confidence 3456688999999999999999999999999999999999999999999999999865321 1357899999999999
Q ss_pred EEEEEecCCcc
Q psy17123 88 RRNVHRRDHKE 98 (105)
Q Consensus 88 I~~i~~~d~~~ 98 (105)
|++|+++|+..
T Consensus 93 Iv~I~~~d~~e 103 (113)
T 4emk_C 93 LVLIAPMDGSE 103 (113)
T ss_dssp EEEEEECC---
T ss_pred EEEEEecCccc
Confidence 99999999765
No 2
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.8e-24 Score=143.35 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=70.8
Q ss_pred cccccccchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCce---eeeeeEEeeEEEcCCcEEEE
Q psy17123 15 KDRKRKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQ---SVQVRSWCSIVRRQESRRNV 91 (105)
Q Consensus 15 ~~~~~~~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~---~~~~~~lg~vlIRG~~I~~i 91 (105)
+---..++...|.+++||+|+|+|+|||.|+|+|+|||+||||+|+||.|++..+++ ....+.+|.++|||++|++|
T Consensus 4 ~~~~~~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I 83 (96)
T 3bw1_A 4 HHHHMETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLI 83 (96)
T ss_dssp --CCCCCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEE
T ss_pred cchhhhhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEE
Confidence 334567889999999999999999999999999999999999999999999865321 23578999999999999999
Q ss_pred EecCCcc
Q psy17123 92 HRRDHKE 98 (105)
Q Consensus 92 ~~~d~~~ 98 (105)
++.+...
T Consensus 84 ~~~d~~~ 90 (96)
T 3bw1_A 84 STPSEDD 90 (96)
T ss_dssp ECCC---
T ss_pred EecCccc
Confidence 9988763
No 3
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.91 E-value=4.1e-24 Score=135.28 Aligned_cols=72 Identities=25% Similarity=0.305 Sum_probs=64.7
Q ss_pred cchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCC
Q psy17123 21 ESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDH 96 (105)
Q Consensus 21 ~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~ 96 (105)
.|...|.++++++|+|+|+|||.|+|+|.|||+|||++|+||.|+..+. ..+.+|.++|||++|++|++.|+
T Consensus 4 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~----~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 4 RPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGE----VVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTE----EEEEEEEEEECGGGEEEEEEC--
T ss_pred hHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCC----ceeECCEEEECCCEEEEEEeCCC
Confidence 4677899999999999999999999999999999999999999997543 47899999999999999998763
No 4
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.91 E-value=1.9e-24 Score=137.57 Aligned_cols=71 Identities=34% Similarity=0.541 Sum_probs=53.4
Q ss_pred chhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCC
Q psy17123 22 SILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDH 96 (105)
Q Consensus 22 ~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~ 96 (105)
+.+.|++++|++|+|+|+|||.|+|+|.|||+||||+|+||.|+..+++ .+.+|.++|||++|++|++.|.
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~----~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQ----QNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC--------CBSSEEECSSSEEEEEC---
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCc----EeEcCEEEECCCeEEEEEeccC
Confidence 4678999999999999999999999999999999999999999876543 6889999999999999998874
No 5
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.91 E-value=6.1e-24 Score=134.96 Aligned_cols=73 Identities=30% Similarity=0.358 Sum_probs=65.6
Q ss_pred cchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCCc
Q psy17123 21 ESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDHK 97 (105)
Q Consensus 21 ~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~~ 97 (105)
.|...|+++++++|+|+|+||+.|+|+|.|||+|||++|+||.|+..+. ..+.+|.++|||++|++|++.|+.
T Consensus 4 ~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~----~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 4 RPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE----VVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp CHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTE----EEEEEEEEEECGGGEEEEEECC--
T ss_pred cHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCC----cEeECCEEEECCCEEEEEEeCCCC
Confidence 4677899999999999999999999999999999999999999997643 378999999999999999998864
No 6
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.91 E-value=1.1e-23 Score=139.60 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=65.6
Q ss_pred cccccchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCC
Q psy17123 17 RKRKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDH 96 (105)
Q Consensus 17 ~~~~~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~ 96 (105)
+....|+..|.++++++|+|+|++||+|+|+|+|||+||||+|+||+|+..+++ ..+.+|.++|||++|++|.+...
T Consensus 16 ~~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~---~~~~lg~v~IRG~nI~~i~p~~~ 92 (94)
T 4emk_A 16 SMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTG---VTEKHSEMLLNGNGMCMLIPGGK 92 (94)
T ss_dssp ----CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTC---CEEEEEEEEECSTTEEEEEECC-
T ss_pred cccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCC---cEeEcCEEEEcCCEEEEEEeCCC
Confidence 344667788999999999999999999999999999999999999999983333 37899999999999999998754
Q ss_pred c
Q psy17123 97 K 97 (105)
Q Consensus 97 ~ 97 (105)
+
T Consensus 93 p 93 (94)
T 4emk_A 93 P 93 (94)
T ss_dssp -
T ss_pred C
Confidence 3
No 7
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.90 E-value=8.4e-24 Score=134.54 Aligned_cols=72 Identities=28% Similarity=0.365 Sum_probs=64.7
Q ss_pred cchhhHHhhcCCEEEEEEcCC-eEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCC
Q psy17123 21 ESILDLSKFLDKVIRVKFAGG-RECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDH 96 (105)
Q Consensus 21 ~~~~~L~~~i~k~V~V~LkdG-r~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~ 96 (105)
.|...|.++++++|+|+|++| ++|+|+|.|||+|||++|+||.|+..++ ..+.+|.++|||++|++|++.|.
T Consensus 5 ~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~----~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 5 LPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEE----KVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTE----EEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCC----cEeECCeEEEeCCeEEEEEeCCC
Confidence 567889999999999999999 9999999999999999999999997532 47899999999999999998873
No 8
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.90 E-value=8.9e-24 Score=135.80 Aligned_cols=75 Identities=24% Similarity=0.245 Sum_probs=65.8
Q ss_pred cccccchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCC
Q psy17123 17 RKRKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDH 96 (105)
Q Consensus 17 ~~~~~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~ 96 (105)
|....|...|.++++++|+|+|+|||.|+|+|.|||+||||+|+||.|+ . +. ..+.+|.++|||++|++|++.|+
T Consensus 7 ~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~-~~---~~~~lg~v~iRG~~I~~i~~~dg 81 (81)
T 1i8f_A 7 KCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-I-DG---NVYKRGTMVVRGENVLFISPVPG 81 (81)
T ss_dssp ---CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-E-TT---EEEEEEEEEECGGGEEEEEECC-
T ss_pred ccccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-c-CC---cccCCCEEEECCCEEEEEEeCCC
Confidence 4456778889999999999999999999999999999999999999998 3 32 47899999999999999998874
No 9
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.90 E-value=1.1e-23 Score=136.10 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=66.3
Q ss_pred ccccccchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEe
Q psy17123 16 DRKRKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHR 93 (105)
Q Consensus 16 ~~~~~~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~ 93 (105)
.+....|...|.++++++|+|+|+|||.|+|+|.|||+|||++|+||.|+..+. ..+.+|.++|||++|++|++
T Consensus 10 ~~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~----~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 10 RVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGE----VTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp CCCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTE----EEEEEEEEEECGGGEEEEEC
T ss_pred cccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCC----cccCCCEEEECCCEEEEEEC
Confidence 334567788999999999999999999999999999999999999999997543 47899999999999999975
No 10
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.90 E-value=1.2e-23 Score=135.14 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=65.4
Q ss_pred ccchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCC
Q psy17123 20 KESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDH 96 (105)
Q Consensus 20 ~~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~ 96 (105)
..|...|.++++++|+|+|+|||.|+|+|.|||+||||+|+||.|++.+. ..+.+|.++|||++|++|++.|+
T Consensus 8 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~----~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 8 ETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDG----SGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSS----CEEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCC----ceeECCEEEECCCEEEEEEecCC
Confidence 45678899999999999999999999999999999999999999997653 36899999999999999998874
No 11
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.90 E-value=5.2e-24 Score=135.11 Aligned_cols=71 Identities=24% Similarity=0.337 Sum_probs=63.9
Q ss_pred cchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecC
Q psy17123 21 ESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRD 95 (105)
Q Consensus 21 ~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d 95 (105)
.|...|++++|++|+|+|+||+.|+|+|.|||+||||+|+||.|+... + ..+.+|.++|||++|++|++.|
T Consensus 4 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-~---~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNG-K---KTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp HHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETT-E---EEEEEEEEEEEGGGSSEEEEC-
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecC-C---cccEecEEEEcCCeEEEEEecC
Confidence 467789999999999999999999999999999999999999998643 2 3688999999999999999876
No 12
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.90 E-value=2e-23 Score=136.39 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=65.5
Q ss_pred hhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCc------eeeeeeEEeeEEEcCCcEEEEEecCC
Q psy17123 23 ILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTY------QSVQVRSWCSIVRRQESRRNVHRRDH 96 (105)
Q Consensus 23 ~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~------~~~~~~~lg~vlIRG~~I~~i~~~d~ 96 (105)
...|.++++++|+|+|+|||.|+|+|+|||+||||+|+||.|++.... .....+.+|.++|||++|++|++.+.
T Consensus 6 ~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 85 (91)
T 1d3b_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (91)
T ss_dssp -CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEEC
T ss_pred hHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCC
Confidence 457899999999999999999999999999999999999999863210 23467899999999999999998876
Q ss_pred ccc
Q psy17123 97 KEY 99 (105)
Q Consensus 97 ~~~ 99 (105)
+.-
T Consensus 86 ~~~ 88 (91)
T 1d3b_B 86 PPK 88 (91)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 13
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.90 E-value=2.4e-23 Score=135.56 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=65.5
Q ss_pred ccchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCCccc
Q psy17123 20 KESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDHKEY 99 (105)
Q Consensus 20 ~~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~~~~ 99 (105)
..|...|++++|++|+|+|+||+.|+|+|.|||+||||+|+||.|+.. ++ ..+.+|.++|||++|++|++.|....
T Consensus 5 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-g~---~~~~lg~v~IRG~nI~~i~~~d~~~~ 80 (86)
T 3s6n_F 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-GA---LSGHLGEVLIRCNNVLYIRGVEEEEE 80 (86)
T ss_dssp CCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET-TE---EEEEESSEEECGGGEEEEEECC----
T ss_pred cCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC-Cc---eeeEccEEEEeCCeEEEEEeCCcccc
Confidence 356778999999999999999999999999999999999999999853 32 36889999999999999999988664
No 14
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.89 E-value=1e-22 Score=129.44 Aligned_cols=71 Identities=18% Similarity=0.079 Sum_probs=64.6
Q ss_pred cchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecC
Q psy17123 21 ESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRD 95 (105)
Q Consensus 21 ~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d 95 (105)
.|...|++++|++|+|+|++|++|+|+|.|||+|||++|+||+|+..+++ .+.+|.++|||++|.+|+..|
T Consensus 5 ~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~----~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR----VAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC----EEEEEEEEECGGGEEEEEECC
T ss_pred CHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCc----EEEcCeEEEeCCEEEEEEcCC
Confidence 46678999999999999999999999999999999999999999865443 688999999999999999765
No 15
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.88 E-value=3.5e-23 Score=136.58 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=67.2
Q ss_pred ccccccchhhHHhhcCCEEEEEE----cCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEE
Q psy17123 16 DRKRKESILDLSKFLDKVIRVKF----AGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNV 91 (105)
Q Consensus 16 ~~~~~~~~~~L~~~i~k~V~V~L----kdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i 91 (105)
+|....|+..|.++++++|+|++ ++||+|+|+|.|||+||||+|+||+|+..+++ ..+.+|.++|||++|++|
T Consensus 11 ~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~---~~~~lg~v~iRG~nV~~i 87 (92)
T 3s6n_E 11 QKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK---SRKQLGRIMLKGDNITLL 87 (92)
T ss_dssp ---CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSC---CEEEEEEEEECGGGEEEE
T ss_pred ceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCC---ceeEcCeEEEeCCEEEEE
Confidence 45668888999999999999999 99999999999999999999999999975443 368899999999999999
Q ss_pred EecC
Q psy17123 92 HRRD 95 (105)
Q Consensus 92 ~~~d 95 (105)
++.|
T Consensus 88 ~~~~ 91 (92)
T 3s6n_E 88 QSVS 91 (92)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 9875
No 16
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.88 E-value=2.2e-22 Score=132.70 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=63.5
Q ss_pred cccchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEec----Cc-----eeeeeeEEeeEEEcCCcEE
Q psy17123 19 RKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRV----TY-----QSVQVRSWCSIVRRQESRR 89 (105)
Q Consensus 19 ~~~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~----~~-----~~~~~~~lg~vlIRG~~I~ 89 (105)
...|...|+.+++++|+|+|++||.|+|+|.|||+||||+|+||+|++.. ++ .....+.+|+++|||++|+
T Consensus 7 ~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv 86 (93)
T 4emg_A 7 VAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVI 86 (93)
T ss_dssp --CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEE
T ss_pred cCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEE
Confidence 45667778888999999999999999999999999999999999999863 11 0125789999999999999
Q ss_pred EEEec
Q psy17123 90 NVHRR 94 (105)
Q Consensus 90 ~i~~~ 94 (105)
+|++.
T Consensus 87 ~I~p~ 91 (93)
T 4emg_A 87 LIAPP 91 (93)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99874
No 17
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.88 E-value=9.3e-23 Score=134.67 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=60.9
Q ss_pred ccchhhHHhhcCCEEEEEEcCC-eEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecC
Q psy17123 20 KESILDLSKFLDKVIRVKFAGG-RECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRD 95 (105)
Q Consensus 20 ~~~~~~L~~~i~k~V~V~LkdG-r~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d 95 (105)
..|...|.+++|++|+|+|+|| ++|+|+|.|||+||||+|+||.|+..++ ..+.+|.++|||++|++|++.+
T Consensus 20 ~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~----~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 20 VNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGV----SHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp ------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTE----EEEECCSEEECGGGEEEEEECC
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCC----eEeEcCEEEEcCCeEEEEEeCC
Confidence 4566789999999999999999 9999999999999999999999986432 3688999999999999999765
No 18
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.88 E-value=4.3e-23 Score=141.77 Aligned_cols=80 Identities=24% Similarity=0.315 Sum_probs=66.2
Q ss_pred cccchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCc------eeee-----eeEEeeEEEcCCc
Q psy17123 19 RKESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTY------QSVQ-----VRSWCSIVRRQES 87 (105)
Q Consensus 19 ~~~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~------~~~~-----~~~lg~vlIRG~~ 87 (105)
...+...|.++++++|+|+|+|||.|+|+|+|||+||||+|+||.|++.+.. +... .+.+|.++|||++
T Consensus 26 ~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~n 105 (121)
T 2fwk_A 26 IILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNN 105 (121)
T ss_dssp CCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGG
T ss_pred ccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCE
Confidence 3566677899999999999999999999999999999999999999985310 0112 6889999999999
Q ss_pred EEEEEecCCcc
Q psy17123 88 RRNVHRRDHKE 98 (105)
Q Consensus 88 I~~i~~~d~~~ 98 (105)
|++|++.+.+.
T Consensus 106 Vv~I~~~~~~~ 116 (121)
T 2fwk_A 106 VAMLVPGGDPD 116 (121)
T ss_dssp EEEEESSSCC-
T ss_pred EEEEEecCCCC
Confidence 99999877654
No 19
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.87 E-value=3.1e-22 Score=134.93 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=56.1
Q ss_pred cchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCCcc
Q psy17123 21 ESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDHKE 98 (105)
Q Consensus 21 ~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~~~ 98 (105)
.+...|++++|++|+|+|++|++|+|+|.|||+||||+|+||+|+..+++ ..+.+|.++|||++|++|++.|...
T Consensus 16 ~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~---~~~~lg~v~IRG~nI~~I~~pd~l~ 90 (105)
T 4emh_A 16 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGD---KFFRLPECYIRGNNIKYLRIQDEVL 90 (105)
T ss_dssp ----------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC---EEEEEEEEEECGGGEEEEEC-----
T ss_pred cHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCc---eeeEcCeEEEeCCeEEEEecCHHHh
Confidence 45667899999999999999999999999999999999999999866554 3688999999999999999887653
No 20
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.86 E-value=1.4e-21 Score=133.93 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=65.3
Q ss_pred chhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCCc
Q psy17123 22 SILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDHK 97 (105)
Q Consensus 22 ~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~~ 97 (105)
++..|+++++++|+|+|++|++|+|+|.+||+||||+|+||+|+..+++ .+.+|.++|||++|++|++.|..
T Consensus 3 p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~----~~~lg~v~IRG~nI~~I~~pd~l 74 (119)
T 1b34_A 3 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNRE----PVQLETLSIRGNNIRYFILPDSL 74 (119)
T ss_dssp HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSC----CEEEEEEEECGGGEEEEECCTTC
T ss_pred hHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCc----eeEcceEEEcCCeEEEEEecccc
Confidence 4677999999999999999999999999999999999999999865433 58899999999999999998873
No 21
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.86 E-value=2.3e-21 Score=145.79 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=65.9
Q ss_pred hhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEe-cCc-----eeeeeeEEeeEEEcCCcEEEEEecCC
Q psy17123 23 ILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLR-VTY-----QSVQVRSWCSIVRRQESRRNVHRRDH 96 (105)
Q Consensus 23 ~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~-~~~-----~~~~~~~lg~vlIRG~~I~~i~~~d~ 96 (105)
...|.+|+||+|+|+|+|||+|+|+|+|||+||||+|+||+|++. ..+ +..+.+++|+++|||+||++|+. +.
T Consensus 6 ~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isv-e~ 84 (231)
T 3pgw_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV-EG 84 (231)
T ss_pred hHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEe-cC
Confidence 357999999999999999999999999999999999999999974 111 12368999999999999999984 44
Q ss_pred cccccc
Q psy17123 97 KEYEDS 102 (105)
Q Consensus 97 ~~~~~~ 102 (105)
...+|.
T Consensus 85 pPp~d~ 90 (231)
T 3pgw_B 85 PPPKDT 90 (231)
T ss_pred CCCCCc
Confidence 444543
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.85 E-value=2.5e-21 Score=132.31 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=64.1
Q ss_pred cccccccchhhHHhhc--CCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCce----------eeeeeEEeeEE
Q psy17123 15 KDRKRKESILDLSKFL--DKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQ----------SVQVRSWCSIV 82 (105)
Q Consensus 15 ~~~~~~~~~~~L~~~i--~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~----------~~~~~~lg~vl 82 (105)
.+.....|...|.+++ +++|+|.|+|||.|.|+|.|||+||||+|+||.|++..... ....+.+|.++
T Consensus 21 ~~~~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~ 100 (118)
T 1b34_B 21 EEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100 (118)
T ss_dssp -----CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEE
T ss_pred hhhcccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEE
Confidence 3445677888899999 59999999999999999999999999999999998743110 01256799999
Q ss_pred EcCCcEEEEEecCCc
Q psy17123 83 RRQESRRNVHRRDHK 97 (105)
Q Consensus 83 IRG~~I~~i~~~d~~ 97 (105)
|||++|++|++.+..
T Consensus 101 IRG~nVv~I~~~~~~ 115 (118)
T 1b34_B 101 LRGDSVIVVLRNPLI 115 (118)
T ss_dssp ECGGGEEEEEECCCC
T ss_pred EcCCEEEEEEeCchh
Confidence 999999999987753
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.83 E-value=1.9e-20 Score=129.74 Aligned_cols=73 Identities=18% Similarity=0.076 Sum_probs=66.1
Q ss_pred cchhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCCc
Q psy17123 21 ESILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDHK 97 (105)
Q Consensus 21 ~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~~ 97 (105)
.|...|+++++++|+|+|++|++|.|+|.+||+||||+|+||+|+..+++ ...+|.++|||++|.+|+..|..
T Consensus 5 ~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~----~~~l~~v~IRGnnI~~I~lpd~l 77 (126)
T 2y9a_D 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR----VAQLEQVYIRGSKIRFLILPDML 77 (126)
T ss_dssp CSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSC----CEEEEEEEECGGGEEEEECCSSC
T ss_pred cHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCc----EeecccEEEeCCEEEEEEccccc
Confidence 46778999999999999999999999999999999999999999865543 67899999999999999987754
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.80 E-value=8.4e-20 Score=127.06 Aligned_cols=67 Identities=18% Similarity=0.359 Sum_probs=61.6
Q ss_pred hhhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCCc
Q psy17123 23 ILDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDHK 97 (105)
Q Consensus 23 ~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~~ 97 (105)
...|++++|++|+|+|+||+.|.|+|.|||+||||+|+||.|+ . .+.+|.++|||++|++|++.|..
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~--~------~~~lg~v~IRG~nI~~I~~~d~~ 68 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNK--A------GEKFNRVFIMYRYIVHIDSTERR 68 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECT--T------CCEEEEEEECGGGEEEEEECCCC
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEE--c------CCEeceEEEeCCeEEEEEcCCcc
Confidence 4679999999999999999999999999999999999999996 2 25789999999999999998875
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.15 E-value=1.6e-10 Score=75.23 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=59.9
Q ss_pred cchhhHHhhcCCEEEEEEcCCeEEEEEEEEec-CccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCCccc
Q psy17123 21 ESILDLSKFLDKVIRVKFAGGRECSGILKGFD-PLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDHKEY 99 (105)
Q Consensus 21 ~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD-~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~~~~ 99 (105)
-.+.+|.+++||+|.|+|.||++|+|+|.+|| ...|++|.|+ .++ .....++|.|..|..|...+...+
T Consensus 7 ~~p~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~----~~~------~~~~~~iI~G~aI~eI~v~~~~~~ 76 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF----LED------GSMSVTGIMGHAVQTVETMNEGDH 76 (86)
T ss_dssp SCHHHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE----CTT------SCEEEEEECGGGEEEEEEEECCCH
T ss_pred CCHHHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec----ccC------CeEEEEEEecceEEEEEEecchhH
Confidence 35779999999999999999999999999999 9999999998 122 224689999999999988777665
Q ss_pred c
Q psy17123 100 E 100 (105)
Q Consensus 100 ~ 100 (105)
.
T Consensus 77 ~ 77 (86)
T 1y96_A 77 R 77 (86)
T ss_dssp H
T ss_pred H
Confidence 4
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.11 E-value=0.004 Score=40.29 Aligned_cols=71 Identities=13% Similarity=0.092 Sum_probs=55.8
Q ss_pred HhhcCCEEEEEEcCCeEEEEEEEEec-CccCeEecceEEEEecCce-----eeeeeEEeeEEEcCCcEEEEEecCCc
Q psy17123 27 SKFLDKVIRVKFAGGRECSGILKGFD-PLLNLVLDNTTEYLRVTYQ-----SVQVRSWCSIVRRQESRRNVHRRDHK 97 (105)
Q Consensus 27 ~~~i~k~V~V~LkdGr~i~G~L~~fD-~~mNlvL~da~E~~~~~~~-----~~~~~~lg~vlIRG~~I~~i~~~d~~ 97 (105)
..|+|++|.+..+.+..|+|+|...| +-.-|.|.|+..+-.++.. ......+..++.||+.|..+...+..
T Consensus 9 ~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~~ 85 (88)
T 2vxe_A 9 LPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNNH 85 (88)
T ss_dssp SCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCCC
T ss_pred CcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEeccC
Confidence 36899999999999999999999999 5668999998876443221 12344568899999999998876543
No 27
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.88 E-value=0.0022 Score=42.04 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=55.2
Q ss_pred hhHHhhcCCEEEEEEcCCeEEEEEEEEec-CccCeEecceEEEEecCce-----eeeeeEEeeEEEcCCcEEEEEecCCc
Q psy17123 24 LDLSKFLDKVIRVKFAGGRECSGILKGFD-PLLNLVLDNTTEYLRVTYQ-----SVQVRSWCSIVRRQESRRNVHRRDHK 97 (105)
Q Consensus 24 ~~L~~~i~k~V~V~LkdGr~i~G~L~~fD-~~mNlvL~da~E~~~~~~~-----~~~~~~lg~vlIRG~~I~~i~~~d~~ 97 (105)
..-..|+|++|.+..+.+..|+|+|...| +-.-|.|.++..+-.++.. ......+..++.||+-|..+...+.+
T Consensus 12 ~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e~p 91 (95)
T 2fb7_A 12 SGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEPP 91 (95)
T ss_dssp ----CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESCCS
T ss_pred CccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEecCC
Confidence 34468999999999999999999999999 6667889998765432211 12334567899999999999876654
No 28
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.0024 Score=39.86 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=28.6
Q ss_pred hhcCCEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 28 KFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 28 ~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
+--+.+|+|.|.+|-.++|.+.+||+|+=++-.+
T Consensus 22 r~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 22 RLNGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp GGTTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred HHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 3356799999999999999999999998666443
No 29
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.70 E-value=0.0022 Score=40.21 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=39.1
Q ss_pred hHHhhc--CCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecC
Q psy17123 25 DLSKFL--DKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRD 95 (105)
Q Consensus 25 ~L~~~i--~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d 95 (105)
.|+.+. ..+|+|.|.+|..++|.+.+||+|+=++-.+ ...+|--..|.+|.+..
T Consensus 13 ~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~~~-----------------~~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 13 FLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT-----------------VSQMVYKHAISTVVPSR 68 (74)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS-----------------SEEEEEGGGEEEEEESS
T ss_pred HHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC-----------------ceEEEEeeeEEEEeEcc
Confidence 355664 7899999999999999999999997554321 12455666666666544
No 30
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.61 E-value=0.0023 Score=40.96 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=26.9
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCccCeEe
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPLLNLVL 59 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL 59 (105)
-..+|+|.|.||-.++|.+.+||+|+=|+-
T Consensus 18 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 18 ERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp TTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred cCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 377999999999999999999999986654
No 31
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.49 E-value=0.0058 Score=38.57 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=29.5
Q ss_pred HHhhc--CCEEEEEEcCCeEEEEEEEEecCccCeEec
Q psy17123 26 LSKFL--DKVIRVKFAGGRECSGILKGFDPLLNLVLD 60 (105)
Q Consensus 26 L~~~i--~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~ 60 (105)
|+.+. ..+|+|.|.+|-.++|.+.+||+|+=++-.
T Consensus 12 Ln~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~ 48 (77)
T 1kq1_A 12 LENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNS 48 (77)
T ss_dssp HHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEE
T ss_pred HHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEE
Confidence 55554 789999999999999999999999866543
No 32
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.44 E-value=0.0041 Score=39.40 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=29.3
Q ss_pred HHhh--cCCEEEEEEcCCeEEEEEEEEecCccCeEec
Q psy17123 26 LSKF--LDKVIRVKFAGGRECSGILKGFDPLLNLVLD 60 (105)
Q Consensus 26 L~~~--i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~ 60 (105)
|+.+ -..+|+|.|.||..++|.+.+||+|+=++-.
T Consensus 16 Ln~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~ 52 (78)
T 3ahu_A 16 LNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLES 52 (78)
T ss_dssp HHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEES
T ss_pred HHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEE
Confidence 4444 3789999999999999999999999866643
No 33
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.32 E-value=0.0052 Score=39.02 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=27.7
Q ss_pred HHhhc--CCEEEEEEcCCeEEEEEEEEecCccCeE
Q psy17123 26 LSKFL--DKVIRVKFAGGRECSGILKGFDPLLNLV 58 (105)
Q Consensus 26 L~~~i--~k~V~V~LkdGr~i~G~L~~fD~~mNlv 58 (105)
|+.+. ..+|+|.|.+|..++|.+.+||+|+=++
T Consensus 13 Ln~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 13 LNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 45553 5689999999999999999999998654
No 34
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.83 E-value=0.0091 Score=39.70 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=28.5
Q ss_pred HHhhc--CCEEEEEEcCCeEEEEEEEEecCccCeEe
Q psy17123 26 LSKFL--DKVIRVKFAGGRECSGILKGFDPLLNLVL 59 (105)
Q Consensus 26 L~~~i--~k~V~V~LkdGr~i~G~L~~fD~~mNlvL 59 (105)
|+.+. ..+|+|.|.+|-.++|++.+||+|+=|+-
T Consensus 14 Ln~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~ 49 (104)
T 2y90_A 14 LNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (104)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 45554 45999999999999999999999986654
No 35
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=95.57 E-value=0.043 Score=35.22 Aligned_cols=64 Identities=8% Similarity=0.100 Sum_probs=50.4
Q ss_pred ccchhhHHhhcCCEEEEEEcCCeEEEEEEEEec-CccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEE
Q psy17123 20 KESILDLSKFLDKVIRVKFAGGRECSGILKGFD-PLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVH 92 (105)
Q Consensus 20 ~~~~~~L~~~i~k~V~V~LkdGr~i~G~L~~fD-~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~ 92 (105)
++....|..+.|++|.+.|.++.++.|++.++| ...|+..++-. .+ ...++..++|+.-|++++
T Consensus 18 eRfLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~----TP-----iGv~~eAlLR~~Dii~~s 82 (85)
T 1y96_B 18 ERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ----TP-----IGVQAEALLRCSDIISYT 82 (85)
T ss_dssp HHHHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC----CT-----TCCEEEEEEEGGGEEEEE
T ss_pred HHHHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC----CC-----cccchhhhhhcCCEEEEE
Confidence 455666778889999999999999999999999 55577665521 12 345778999999999886
No 36
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=95.30 E-value=0.035 Score=35.57 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=48.7
Q ss_pred hhcCCEEEEEEcCCe-EEEEEEEEecCc-cCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCC
Q psy17123 28 KFLDKVIRVKFAGGR-ECSGILKGFDPL-LNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDH 96 (105)
Q Consensus 28 ~~i~k~V~V~LkdGr-~i~G~L~~fD~~-mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~ 96 (105)
+|+|+.|.+..+++. .|+|.|..+|+. -+|.|.+++ .++- ......|.+|+.-|..+..++.
T Consensus 6 ~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~----~~~s~eVtls~~DI~~L~ii~~ 69 (84)
T 2vc8_A 6 DWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGV----KCLVPEVTFRAGDITELKILEI 69 (84)
T ss_dssp TTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTE----ECSSSEEEEEGGGCSEEEEEEC
T ss_pred cccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCC----CCCCcEEEEEecChhheEEEec
Confidence 799999999999999 999999999976 589999995 3442 1222458888888877766544
No 37
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=95.15 E-value=0.035 Score=34.41 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=41.2
Q ss_pred chhhHHhhc--CCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEe
Q psy17123 22 SILDLSKFL--DKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHR 93 (105)
Q Consensus 22 ~~~~L~~~i--~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~ 93 (105)
++..|++|+ ...|.|.|.+|..++|++.-+|+|.=++..+ ++. .++|.-..|.+|.+
T Consensus 10 svR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~~------~~~---------~~LI~r~AI~~I~p 68 (70)
T 3hfo_A 10 SVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLVDD------SER---------STIVRLAAIAYITP 68 (70)
T ss_dssp HHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEECT------TCC---------EEEEEGGGEEEEEE
T ss_pred cHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEEcC------CCC---------eEEEEeeeeEEEee
Confidence 467788896 4799999999999999999999886443322 111 25666666777654
No 38
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=94.84 E-value=0.038 Score=37.77 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=33.0
Q ss_pred hhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEe--cceE
Q psy17123 24 LDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVL--DNTT 63 (105)
Q Consensus 24 ~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL--~da~ 63 (105)
+...+|+|..|.|+|+||..++|++..+| --+|+| .+|.
T Consensus 5 ~~~sqFlGy~V~v~LkDgs~~qG~I~~vd-~k~LtL~~~~a~ 45 (125)
T 4a53_A 5 MSVADFYGSNVEVLLNNDSKARGVITNFD-SSNSILQLRLAN 45 (125)
T ss_dssp CCHHHHTTCEEEEEETTSCEEEEEEEEEE-TTTTEEEEEETT
T ss_pred ccHHHhcCceEEEEECCCCEeeEEEEeec-CCeeEEeccccc
Confidence 35678999999999999999999999998 345666 8774
No 39
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.81 E-value=0.17 Score=30.95 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=41.5
Q ss_pred hHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEe
Q psy17123 25 DLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHR 93 (105)
Q Consensus 25 ~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~ 93 (105)
.|++|.|++|-|.......|+|+|.-||.-. |.|.|+..+.-+. -..++++=+-|-.|..
T Consensus 10 tL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~GNk--------~k~liv~idDinWimL 69 (71)
T 1ycy_A 10 VLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIGNR--------GKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTEEE--------EEEEEEEGGGEEEEEE
T ss_pred HHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhccc--------cceeEEEeccceEEEe
Confidence 4899999999999999999999999999865 6788888764321 1245666666665544
No 40
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=94.65 E-value=0.057 Score=33.61 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=41.7
Q ss_pred cchhhHHhhcC--CEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEe
Q psy17123 21 ESILDLSKFLD--KVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHR 93 (105)
Q Consensus 21 ~~~~~L~~~i~--k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~ 93 (105)
.++..|++|+- +.|.|+|.+|..++|++.-+|++.=++..+ .. ..++|....|.+|.+
T Consensus 11 PsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~~-------~~--------~~~LI~R~AI~~Ikp 70 (72)
T 3hfn_A 11 PSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIADE-------NS--------RQTTIWKQAIAYLQP 70 (72)
T ss_dssp HHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC------------------CEEEEEGGGEEEEEE
T ss_pred CcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEcC-------CC--------CeEEEEeeeeEEEEe
Confidence 35778899974 589999999999999999999875333322 11 136677777777764
No 41
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=91.51 E-value=0.22 Score=34.93 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=31.2
Q ss_pred ccccccchhhHHhhcCCEEEEEEc----CCeEEEEEEEEecCccCeEe
Q psy17123 16 DRKRKESILDLSKFLDKVIRVKFA----GGRECSGILKGFDPLLNLVL 59 (105)
Q Consensus 16 ~~~~~~~~~~L~~~i~k~V~V~Lk----dGr~i~G~L~~fD~~mNlvL 59 (105)
|.|-+. ..+..+++|+.|.|++. +.+.|+|+|.++|.- .++|
T Consensus 90 dRpL~~-~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~-~v~l 135 (164)
T 1ib8_A 90 ERPLKT-KDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED-ELTM 135 (164)
T ss_dssp SSCCSS-HHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT-EEEE
T ss_pred CCCCCC-HHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC-EEEE
Confidence 444433 55678899999999993 458999999999964 3444
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=91.06 E-value=0.3 Score=36.46 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=29.6
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
+|++|+|.+.+|+.++|+..|.|+...|+|..
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 68999999888999999999999999999964
No 43
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=82.60 E-value=0.83 Score=33.18 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=26.1
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
+|++|+|...++ +.|+..|.|+...|+|..
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEE
Confidence 799999976554 999999999999999964
No 44
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=81.18 E-value=9.1 Score=24.97 Aligned_cols=64 Identities=6% Similarity=0.086 Sum_probs=47.6
Q ss_pred HhhcCCEEEEEEcCCe-EEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEEEecCC
Q psy17123 27 SKFLDKVIRVKFAGGR-ECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNVHRRDH 96 (105)
Q Consensus 27 ~~~i~k~V~V~LkdGr-~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i~~~d~ 96 (105)
.+|+|+-|.|...+-- .|+|.+...|+ -+|.|.+++.. +- .-......|.+|..-|..+..++.
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFrN---Gi--plk~~~~EVtLsa~DI~~L~IIe~ 72 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFRN---GV--PLRKQNAEVVLKCTDIRSIDLIEP 72 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEET---TE--ECSCSSSCEEEETTTEEEEEEEEC
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhhc---Cc--CcCCCCceEEEEecchhheeeecc
Confidence 3899999999999987 99999999996 44999988852 21 001234567788887877766543
No 45
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=79.59 E-value=2.6 Score=30.62 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=28.3
Q ss_pred hcCCEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 29 FLDKVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 29 ~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
.+|++|+|...++..++|+..|.|+...|+ ..
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 379999999888877999999999999998 53
No 46
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=77.07 E-value=3.6 Score=30.95 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=27.2
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
+|++|+|... +..+.|+..|.|+...|+|..
T Consensus 272 ~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~ 302 (321)
T 1bia_A 272 INRPVKLIIG-DKEIFGISRGIDKQGALLLEQ 302 (321)
T ss_dssp TTSEEEEEET-TEEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEC-CcEEEEEEEEECCCCeEEEEE
Confidence 7999999865 558999999999999999964
No 47
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=75.60 E-value=2.3 Score=30.93 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=24.0
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
+|++|+|...++ +.|+..|.|+...|+|..
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999987766 999999999999999964
No 48
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=72.82 E-value=4.1 Score=30.94 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=26.4
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
+|++|+|.. ++..+.|+..|.|+...|+|..
T Consensus 278 ~g~~V~v~~-~~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 278 WNRTLLFTE-NDKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp SSSCEEEEC-C-CEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEE-CCeEEEEEEEEECCCCEEEEEE
Confidence 699999985 4567999999999999999963
No 49
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=72.81 E-value=5.3 Score=28.74 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.2
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
+|++|+| +| ++|+..|.|+...|+|..
T Consensus 193 ~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 193 MGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred cCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 7899999 45 999999999999999964
No 50
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=67.68 E-value=17 Score=22.09 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.5
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPL 54 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~ 54 (105)
++..|.++-.||+.|-|++....+.
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~~~ 42 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQTSD 42 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECSS
T ss_pred cCCeEEEEecCCCEEEEEEEecCCc
Confidence 7899999999999999999665543
No 51
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=63.64 E-value=11 Score=24.13 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=26.5
Q ss_pred ccchhhHHhhcCCEEEEEEcCCe----EEEEEEEEe
Q psy17123 20 KESILDLSKFLDKVIRVKFAGGR----ECSGILKGF 51 (105)
Q Consensus 20 ~~~~~~L~~~i~k~V~V~LkdGr----~i~G~L~~f 51 (105)
...-..|..++|++|.++.+.|| +-+|+|...
T Consensus 14 ~~IK~~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 14 KKIKEEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHHHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 44456789999999999999998 678988765
No 52
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=59.51 E-value=14 Score=21.73 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.2
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCcc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPLL 55 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~m 55 (105)
.|..|.+.-.||+.|-|++..+|+.-
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAR 31 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCC
Confidence 47889999999999999999998764
No 53
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=59.25 E-value=9.3 Score=24.67 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=15.9
Q ss_pred CEEEEEEcCCeEEEEEE
Q psy17123 32 KVIRVKFAGGRECSGIL 48 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L 48 (105)
.+|+++|.||+.+.|++
T Consensus 29 ~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 29 ERVRIELDDGSMIAGTV 45 (101)
T ss_dssp CEEEEEETTSCEEEEEE
T ss_pred eEEEEEEcCCCeEeeee
Confidence 59999999999999996
No 54
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=50.11 E-value=25 Score=21.17 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=23.1
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPL 54 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~ 54 (105)
.|..|+..-.||+.|.|++..+++.
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 5889999999999999999999975
No 55
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=49.37 E-value=50 Score=21.29 Aligned_cols=59 Identities=8% Similarity=0.105 Sum_probs=41.4
Q ss_pred EEEEcCCeEEEEEEEEecCccCeEecceEEEEecCce---e----ee----eeEEeeEEEcCCcEEEEEecC
Q psy17123 35 RVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQ---S----VQ----VRSWCSIVRRQESRRNVHRRD 95 (105)
Q Consensus 35 ~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~---~----~~----~~~lg~vlIRG~~I~~i~~~d 95 (105)
.++|++|..+.|.+.--|.. +.++|.++.+....+ . +. ...-..++||.+.|+++....
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~ 76 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPK 76 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBC
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCC
Confidence 57899999999999977764 889999887642211 0 00 011246899999999997653
No 56
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=48.59 E-value=25 Score=27.59 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=26.6
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 32 KVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
..+.|.+.||+.+.+.+.++|...+|-|=.
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlk 140 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQ 140 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEE
Confidence 479999999999999999999999987643
No 57
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=48.48 E-value=26 Score=27.29 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=27.3
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccCeEecce
Q psy17123 32 KVIRVKFAGGRECSGILKGFDPLLNLVLDNT 62 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da 62 (105)
.++.|.+.||+.+.+.+.++|...+|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5899999999999999999999998876443
No 58
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.13 E-value=1.2 Score=29.04 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.7
Q ss_pred EEEEEEecCccCeEecceEE
Q psy17123 45 SGILKGFDPLLNLVLDNTTE 64 (105)
Q Consensus 45 ~G~L~~fD~~mNlvL~da~E 64 (105)
.|++.+||+-.|+.|++|..
T Consensus 34 ~~~~~~FDk~TNl~LEeA~~ 53 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAWK 53 (99)
T ss_dssp SSCEEECCTTHHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHHH
Confidence 46799999999999999883
No 59
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=43.02 E-value=29 Score=23.04 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.9
Q ss_pred cCCEEEEEEcCCeEEEEEEEEec
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFD 52 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD 52 (105)
+|.+|+.+-++||.|.|++.+..
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEe
Confidence 68999999999999999988764
No 60
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=39.97 E-value=37 Score=25.64 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=26.1
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 32 KVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
.++.|.+.||+.+.+.+.++|...+|-|=.
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 117 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEE
Confidence 478999999999999999999998876643
No 61
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=37.73 E-value=38 Score=24.30 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=25.5
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 32 KVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
.++.|.+.+|+.+.+.+.+.|....|-|=.
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 117 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEE
Confidence 478999999999999999999988876643
No 62
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=37.26 E-value=34 Score=26.83 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=26.5
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 32 KVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
..+.|.+.||+.+.+.+.++|...+|-|=.
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 131 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLK 131 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEE
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEE
Confidence 478999999999999999999999887644
No 63
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=35.36 E-value=50 Score=24.25 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=25.8
Q ss_pred CCEEEEEEcCCeEEEEEEEEecCccCeEec
Q psy17123 31 DKVIRVKFAGGRECSGILKGFDPLLNLVLD 60 (105)
Q Consensus 31 ~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~ 60 (105)
...+.|.+.+|+.+.+.+.++|...+|-|=
T Consensus 63 ~~~i~V~~~~g~~~~a~vv~~d~~~DlAll 92 (324)
T 1y8t_A 63 PPKTTVTFSDGRTAPFTVVGADPTSDIAVV 92 (324)
T ss_dssp -CEEEEEETTCCEECEEEEECCTTTTEEEE
T ss_pred ceEEEEEeCCCCEEEEEEEEeCCCCCEEEE
Confidence 348999999999999999999998887764
No 64
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=34.00 E-value=59 Score=22.71 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=25.7
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccCeEec
Q psy17123 32 KVIRVKFAGGRECSGILKGFDPLLNLVLD 60 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~~mNlvL~ 60 (105)
..+.|.+.+|+.+.+.+.++|....|-|=
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll 105 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVL 105 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEE
Confidence 57999999999999999999998887663
No 65
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=33.65 E-value=20 Score=22.43 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=33.9
Q ss_pred hhHHhhcCCEEEEEEcCCeEEEEEEEEecCccCeEecceEEEEecCceeeeeeEEeeEEEcCCcEEEE
Q psy17123 24 LDLSKFLDKVIRVKFAGGRECSGILKGFDPLLNLVLDNTTEYLRVTYQSVQVRSWCSIVRRQESRRNV 91 (105)
Q Consensus 24 ~~L~~~i~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~da~E~~~~~~~~~~~~~lg~vlIRG~~I~~i 91 (105)
.+|.=..+.+++|+|+||..++|+..- +...+-.|+..- ...-+...||=++|.++
T Consensus 18 LElAc~~~~~l~l~l~dGe~~~g~a~D------~~~~~k~E~L~l------~~~~~~~~irLD~I~s~ 73 (86)
T 1sg5_A 18 LELACQHHLMLTLELKDGEKLQAKASD------LVSRKNVEYLVV------EAAGETRELRLDKITSF 73 (86)
T ss_dssp HHHHHTTTTCEEEECTTTCCEEESSCE------EECCSSSCEEEE------EETTEEEEESTTCCSEE
T ss_pred HHHHHHcCCeEEEEEeCCCEEEEEEEe------eEEcCceEEEEE------EcCCCEEEEEchhhhhc
Confidence 344445688999999999999886432 222222232220 11124567888888877
No 66
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=33.57 E-value=61 Score=22.69 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=26.2
Q ss_pred CCEEEEEEcCCeEEEEEEEEecCccCeEec
Q psy17123 31 DKVIRVKFAGGRECSGILKGFDPLLNLVLD 60 (105)
Q Consensus 31 ~k~V~V~LkdGr~i~G~L~~fD~~mNlvL~ 60 (105)
...+.|.+.+|+.+.+.+.++|....|-|=
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL 115 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALI 115 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEE
Confidence 358999999999999999999998887664
No 67
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=32.77 E-value=22 Score=22.18 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.7
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCcc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPLL 55 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~m 55 (105)
.|.-|.+.-+||+.|-|++.-.|..-
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~~ 54 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSAR 54 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETTT
T ss_pred cCCEEEEEecCCCEEeEEEEEeccCC
Confidence 79999999999999999999988653
No 68
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=32.76 E-value=53 Score=21.87 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.0
Q ss_pred cCCEEEEEEcCCeEEEEEEEEec
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFD 52 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD 52 (105)
.|..|.|.-.||..|.|.+.|.=
T Consensus 67 ~G~~V~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 67 EGEVVQVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEEeEEEeeee
Confidence 58899999999999999999973
No 69
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=32.74 E-value=57 Score=23.92 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=26.0
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 32 KVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
..+.|.+.+|+.+.+.+.++|...+|-|=.
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 95 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLI 95 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEE
Confidence 468999999999999999999988887643
No 70
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=32.59 E-value=60 Score=23.99 Aligned_cols=30 Identities=17% Similarity=0.454 Sum_probs=25.9
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccCeEecc
Q psy17123 32 KVIRVKFAGGRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~~mNlvL~d 61 (105)
..+.|.+.+|+.+.+.+.++|....|-|=.
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 100 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLR 100 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEE
Confidence 579999999999999999999988876643
No 71
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=30.76 E-value=61 Score=21.43 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=20.8
Q ss_pred cCCEEEEEEcCCeEEEEEEEEec
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFD 52 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD 52 (105)
.|..|.|...||..|.|++.|.=
T Consensus 66 ~G~~V~V~W~DG~~y~a~f~g~~ 88 (118)
T 2qqr_A 66 EGEVVQVRWTDGQVYGAKFVASH 88 (118)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEeeeEEecee
Confidence 58899999999999999999853
No 72
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=29.68 E-value=35 Score=24.49 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=17.2
Q ss_pred cCCEEEEEEcCCeEEEEEEEE
Q psy17123 30 LDKVIRVKFAGGRECSGILKG 50 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~ 50 (105)
+|..|+|.+..|+.+.|+..+
T Consensus 170 ~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 170 VAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp TTSEEEEEETTSCEEEEEECT
T ss_pred CCCEEEEECCCCCEEEEEEec
Confidence 688888888888888888654
No 73
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=29.19 E-value=36 Score=20.31 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=18.5
Q ss_pred CEEEEEEcCCeEEEEEEEEecC
Q psy17123 32 KVIRVKFAGGRECSGILKGFDP 53 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~ 53 (105)
.+|.|.+.||..++++|..-|.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~t 29 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNK 29 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSB
T ss_pred EEEEEECCCCCEEEEEeCCCCC
Confidence 3789999999999999987664
No 74
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.81 E-value=92 Score=18.76 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.2
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCcc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPLL 55 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~m 55 (105)
.+..|...-.||+.|-|+++-.|.+-
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~~ 37 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSAR 37 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETTT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecCC
Confidence 57899999999999999999999654
No 75
>2o1a_A Iron-regulated surface determinant protein A; surface protein staphylococcus aureus, structural genomics, PSI-2; 1.60A {Staphylococcus aureus} SCOP: b.1.28.1
Probab=27.35 E-value=51 Score=22.30 Aligned_cols=37 Identities=5% Similarity=0.039 Sum_probs=23.3
Q ss_pred hhhHHhhcCCEEEEEEcCCeEE-EEEEEEecCccCeEe
Q psy17123 23 ILDLSKFLDKVIRVKFAGGREC-SGILKGFDPLLNLVL 59 (105)
Q Consensus 23 ~~~L~~~i~k~V~V~LkdGr~i-~G~L~~fD~~mNlvL 59 (105)
..-...|+.++..|..+||+.+ +=+|.--+-+-++-+
T Consensus 35 ~Sma~~Y~~kPA~v~v~nGk~~v~lTl~~s~wik~fkv 72 (142)
T 2o1a_A 35 KSHMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYKF 72 (142)
T ss_dssp BCGGGGGBCSSEEEEEETTEEEEEEEESSGGGEEEEEE
T ss_pred ceehHhhCcCCEEEEEECCEEEEEEEEcchhhheeeEE
Confidence 3445599999999999999754 444443333334444
No 76
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=25.39 E-value=1.1e+02 Score=22.42 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=25.7
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccCeEec
Q psy17123 32 KVIRVKFAGGRECSGILKGFDPLLNLVLD 60 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~~mNlvL~ 60 (105)
..+.|.+.+|+.+.+.+.++|....|-|=
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL 98 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALI 98 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEE
Confidence 57899999999999999999998887663
No 77
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=25.36 E-value=79 Score=23.56 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=25.8
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccCeEec
Q psy17123 32 KVIRVKFAGGRECSGILKGFDPLLNLVLD 60 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~~mNlvL~ 60 (105)
..+.|.+.+|+.+.+.+.++|....|-|=
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlL 105 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVL 105 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEE
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEE
Confidence 57999999999999999999998887664
No 78
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=25.06 E-value=1.5e+02 Score=19.85 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=21.6
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccCeEe
Q psy17123 32 KVIRVKFAGGRECSGILKGFDPLLNLVL 59 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD~~mNlvL 59 (105)
..+.|.+ +|+.+..++. +|+...|-|
T Consensus 43 ~~i~V~~-dg~~~~a~vv-~d~~~DlAl 68 (163)
T 2w5e_A 43 TFVNVCY-EGLMYEAKVR-YMPEKDIAF 68 (163)
T ss_dssp SEEEEEE-TTEEEEEEEE-ECCSSSEEE
T ss_pred ceEEEEE-CCEEEEEEEE-EECCCCEEE
Confidence 5688888 9999999999 898776655
No 79
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=24.52 E-value=53 Score=25.00 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=20.4
Q ss_pred HHhhcCCEEEEEEcCCeEEEEEEEE
Q psy17123 26 LSKFLDKVIRVKFAGGRECSGILKG 50 (105)
Q Consensus 26 L~~~i~k~V~V~LkdGr~i~G~L~~ 50 (105)
-..+.+++|+|..++|+.+.|++-.
T Consensus 94 ~~~~~~~~v~i~t~~g~~~~Gvig~ 118 (355)
T 3kl9_A 94 PMVVSSQRFKLLTRDGHEIPVISGS 118 (355)
T ss_dssp TTTCSSCEEEEECTTSCEEEEEEC-
T ss_pred ccccCCCEEEEEcCCCCEEEEEEeC
Confidence 3456799999999999999998854
No 80
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=24.49 E-value=64 Score=23.96 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=17.8
Q ss_pred CeEEEEEEEEecCccCeEecc
Q psy17123 41 GRECSGILKGFDPLLNLVLDN 61 (105)
Q Consensus 41 Gr~i~G~L~~fD~~mNlvL~d 61 (105)
+..+.|.+.-+|.|.|++..=
T Consensus 171 ~~~i~g~V~~iD~FGN~iTnI 191 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILNL 191 (259)
T ss_dssp TTEEEEEEEEECTTCCEEESC
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 456899999999999998754
No 81
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=23.96 E-value=72 Score=25.99 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=25.0
Q ss_pred CEEEEEEc-CCeEEEEEEEEecCccCeEec
Q psy17123 32 KVIRVKFA-GGRECSGILKGFDPLLNLVLD 60 (105)
Q Consensus 32 k~V~V~Lk-dGr~i~G~L~~fD~~mNlvL~ 60 (105)
..|.|.+. ||+.+.+.+.++|....|-|=
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvL 126 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALL 126 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEE
Confidence 47889885 899999999999999888653
No 82
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=23.34 E-value=74 Score=19.39 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.3
Q ss_pred CCEEEEEEcCCeEEEEEEEEecC
Q psy17123 31 DKVIRVKFAGGRECSGILKGFDP 53 (105)
Q Consensus 31 ~k~V~V~LkdGr~i~G~L~~fD~ 53 (105)
+..|+|.+.++..+.|.+..|..
T Consensus 74 d~~I~VEI~~~~~~isv~~~y~~ 96 (98)
T 2dir_A 74 QYTVVVEIIKAVCCLSVVKSGPS 96 (98)
T ss_dssp SEEEEEEEETTEEEEEEEECCCT
T ss_pred CEEEEEEEeCCEEEEEEcccccc
Confidence 56899999999999999998864
No 83
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=23.12 E-value=68 Score=23.80 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.3
Q ss_pred CeEEEEEEEEecCccCeEec
Q psy17123 41 GRECSGILKGFDPLLNLVLD 60 (105)
Q Consensus 41 Gr~i~G~L~~fD~~mNlvL~ 60 (105)
+..+.|.+.-+|.|.|++..
T Consensus 167 ~~~i~g~V~~iD~FGN~iTn 186 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTN 186 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEE
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 45689999999999999864
No 84
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=21.37 E-value=1.2e+02 Score=23.57 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=23.8
Q ss_pred hhHHhhcCCEEEEEEcC----------C-eEEEEEEEEecC
Q psy17123 24 LDLSKFLDKVIRVKFAG----------G-RECSGILKGFDP 53 (105)
Q Consensus 24 ~~L~~~i~k~V~V~Lkd----------G-r~i~G~L~~fD~ 53 (105)
..|..++++.+.|.+.. . |.+.|++..+..
T Consensus 56 l~l~~llg~~~~l~i~~~~~~g~~~g~~~r~~~GiVt~~~~ 96 (491)
T 2p5z_X 56 IAPESVLMQDGAFSLTAPPVQGMPVQTALRTLHGVITGFKH 96 (491)
T ss_dssp CCGGGTTTCEEEEEECC----------CCEEEEEEEEEEEE
T ss_pred CCHHHHcCCcEEEEEEcCCcccccCCccceEEEEEEEEEEE
Confidence 45678899999999952 2 889999888764
No 85
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=21.24 E-value=95 Score=17.24 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=19.2
Q ss_pred cCCEEEEEEc-CCeEEEEEEEEecC
Q psy17123 30 LDKVIRVKFA-GGRECSGILKGFDP 53 (105)
Q Consensus 30 i~k~V~V~Lk-dGr~i~G~L~~fD~ 53 (105)
.|..+..... ||+.|++++.+++.
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~ 30 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDF 30 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEET
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcC
Confidence 4566667765 89999999999875
No 86
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=20.60 E-value=77 Score=20.01 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=18.2
Q ss_pred CEEEEEEcCCeEEEEEEEEec
Q psy17123 32 KVIRVKFAGGRECSGILKGFD 52 (105)
Q Consensus 32 k~V~V~LkdGr~i~G~L~~fD 52 (105)
.+|.|+|-||..++++|..-|
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~ 34 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDA 34 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTS
T ss_pred EEEEEECCCCCEEEEEeCCCC
Confidence 589999999999999987654
No 87
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.46 E-value=90 Score=18.52 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=22.7
Q ss_pred cCCEEEEEEcCCeEEEEEEEEecCc
Q psy17123 30 LDKVIRVKFAGGRECSGILKGFDPL 54 (105)
Q Consensus 30 i~k~V~V~LkdGr~i~G~L~~fD~~ 54 (105)
.+.-|...-+||+.|-|+++-+|..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 5788999999999999999999965
Done!