BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17125
(1281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure
With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure
With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure
With Trna(Ile) And Mupirocin
Length = 917
Score = 348 bits (892), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 216/622 (34%), Positives = 323/622 (51%), Gaps = 62/622 (9%)
Query: 418 TALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHA--LIWTTTPWSLPANQFIA 475
++LAE+E+EY D S SIY+ + +G D A +IWTTTPW++P+N I
Sbjct: 191 SSLAEAEIEYH-DKRSASIYVAFNVKDD-----KGVVDADAKFIIWTTTPWTIPSNVAIT 244
Query: 476 FNPALEYSVASVKGANVIVAKCL----VENLKWTFQTDIDVVCDFPGQYLQDITYIHPIN 531
+P L+Y +V G I+A+ L E L W + I + ++ G+ L+ + HP
Sbjct: 245 VHPELKYGQYNVNGEKYIIAEALSDAVAEALDWD-KASIKLEKEYTGKELEWVVAQHPF- 302
Query: 532 KEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGP 591
R+ ++ V++ GTG VH AP HG+DD+++ ++PV++ I ++G ++ + G
Sbjct: 303 -LDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQ 361
Query: 592 GLEGLNILGDGKDQVLHLVEPDVLWTENY-QHSYPYDWRTKKPVILKASQQWFIDTERIK 650
EG+ K L E L ++ HSYP+DWRTKKPVI +A+ QWF +++
Sbjct: 362 -FEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVR 420
Query: 651 PEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFY-DGDTIIVNEANI 709
+ L +E NF K + + + R W ISRQRVWGVP+PVFY + II+ + +
Sbjct: 421 QDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETV 480
Query: 710 KHFCTLIDEHGPDFWWSLSVEQLL-----NTSDVNSNVTKSNDILDIWFDSGISWSHVLK 764
H L EHG + W+ + LL + N TK DI+D+WFDSG S VL+
Sbjct: 481 NHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLE 540
Query: 765 DKP-----AHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSV 819
+P A +Y+EG DQ GWF SS+ TSVA + +P++ + HGFV+D +G KMSKS+
Sbjct: 541 TRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSL 600
Query: 820 GNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPT 879
GNVI + + G D+ R WV++
Sbjct: 601 GNVIVPDQVVKQK-----------------------------GADIARLWVSS-TDYLAD 630
Query: 880 VPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRY----VDVYMLKRLCEFQN 935
V I IL + DD +KIR++LR++LG +++ + T SI VD Y+L RL EF
Sbjct: 631 VRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTA 690
Query: 936 TMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFH 995
+ Y F Y + + NF+ ELS FY KD LY + + R S L+ I
Sbjct: 691 STINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILV 750
Query: 996 VLLRTVAPIMPHLAEEVYSHLP 1017
+ + +API+ H AEEV+SH P
Sbjct: 751 DMTKLLAPILVHTAEEVWSHTP 772
Score = 268 bits (684), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/395 (39%), Positives = 227/395 (57%), Gaps = 22/395 (5%)
Query: 13 EALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 72
E G FILHDGPPYANG H+GHA+NKILKD +R +QG YVPGWD HGLPI
Sbjct: 42 EKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPI 101
Query: 73 ELKAITSKD---KLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEY 129
E +A+T K K +S + R+K K FALE I QK +F GV D+ ++ Y T EY
Sbjct: 102 E-QALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDF-NDPYITLKPEY 159
Query: 130 VKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVP 189
Q+ F + + IY+ KPVYWSPSS ++LAE+E+EY D S SIY+ +
Sbjct: 160 EAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYH-DKRSASIYVAFNVKDD- 217
Query: 190 AHLLEGATDLHA--LIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCL----VE 243
+G D A +IWTTTPW++P+N I +P L+Y +V G I+A+ L E
Sbjct: 218 ----KGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAE 273
Query: 244 SLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAH 303
+L W + I++ ++ G+ L+ + HP R+ ++ V++ GTG VH AP H
Sbjct: 274 ALDWD-KASIKLEKEYTGKELEWVVAQHPF--LDRESLVINGDHVTTDAGTGCVHTAPGH 330
Query: 304 GQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENY 363
G+DD+++ ++PV++ I ++G ++ + G EG+ K L E L ++
Sbjct: 331 GEDDYIVGQQYELPVISPIDDKGVFTEEGGQ-FEGMFYDKANKAVTDLLTEKGALLKLDF 389
Query: 364 -QHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
HSYP+DWRTKKPVI +A+ QWF +++ + L
Sbjct: 390 ITHSYPHDWRTKKPVIFRATPQWFASISKVRQDIL 424
Score = 109 bits (273), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 1109 ITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVLWTENY-QHSYPYDWRTKKPVILK 1167
I ++G ++ + G EG+ K L E L ++ HSYP+DWRTKKPVI +
Sbjct: 349 IDDKGVFTEEGGQ-FEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFR 407
Query: 1168 ASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFY 1227
A+ QWF +++ + L +E NF K + + + R W ISRQRVWGVP+PVFY
Sbjct: 408 ATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFY 467
Query: 1228 -DGDTIIVNEANIKHFCTLIDEHGPDFWWSLPVEQLL 1263
+ II+ + + H L EHG + W+ + LL
Sbjct: 468 AENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLL 504
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 171/646 (26%), Positives = 278/646 (43%), Gaps = 103/646 (15%)
Query: 415 RPGTALAESELEYKPDHISK-SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQF 473
R GT L+ E+ I S+Y++ L + LE A+ LIWTTTPW+LP N
Sbjct: 183 RCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKAS---LLIWTTTPWTLPGNVA 239
Query: 474 IAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKE 533
A +P Y+ V +I+ + L L V+ FPG+ L+ + Y P +
Sbjct: 240 AAVHPEYTYAAFQVGDEALILEEGLGRKL---LGEGTQVLKTFPGKALEGLPYTPPYPQA 296
Query: 534 -QRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPG 592
++ ++ A +VS GTG+VH APA G +D A +P+L + +GK + G
Sbjct: 297 LEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKG 356
Query: 593 L----EGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTER 648
L IL D + + L E E+Y HSYP+ WR P++ A++ WFI
Sbjct: 357 LYFREANRAILRDLRGRGLLFKE------ESYLHSYPHCWRCSTPLMYYATESWFIKNTL 410
Query: 649 IKPEALACLEEVNFVPESAKKTLRDQ-IAQRPYWCISRQRVWGVPIPVFY----DGDTII 703
K E + +E+++VP K+ + + W +SR R WG P+P++ + I
Sbjct: 411 FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAI 470
Query: 704 VNEANIKHFCTL-----IDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSG-- 756
+ +K T D H P V+Q+ + + ++D+W+DSG
Sbjct: 471 GSFQELKARATKPLPEPFDPHRP------YVDQVELACACGGTMRRVPYVIDVWYDSGAM 524
Query: 757 --------ISWSHVLKDK-PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFV 807
V ++ PA EG+DQ GWF S V L + F+NV HG +
Sbjct: 525 PFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLI 584
Query: 808 VDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLR 867
+DEKG KMSKS GNV+ DI + +G D LR
Sbjct: 585 LDEKGQKMSKSKGNVVDPWDIIR-----------------------------KFGADALR 615
Query: 868 WWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHS--ESTGSISR----- 920
W++ A + G N++ + D Y L + + +S + ++ R
Sbjct: 616 WYIYVSAPPEADRRFGPNLVRETVRD---------YFLTLWNVYSFFVTYANLDRPDLKN 666
Query: 921 --------YVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDR 972
+D ++L R+ + + + ++R L +FVV +LS +Y + R
Sbjct: 667 PPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRR 726
Query: 973 LYC--DSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
+ D+++ EA + TL+ ++ AP P LAE ++ +L
Sbjct: 727 FWKNEDALDREAAYA---TLYEALVLVATLAAPFTPFLAEVLWQNL 769
Score = 173 bits (439), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 200/410 (48%), Gaps = 36/410 (8%)
Query: 10 WQREAL--------NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHY 61
W+RE + G P + +++GPP ANG PH+GHA + KD+ R ++G
Sbjct: 21 WKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPR 80
Query: 62 VPGWDCHGLPIELKAITSKDKLLSPLDIR----KKAKNFALETINTQKAEFESWG-VLAD 116
GWD HGLP+EL+ + K L S +I ++ E++ T + E+E++ +A
Sbjct: 81 RAGWDTHGLPVELE-VEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAY 139
Query: 117 WE--HNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESE--LEYKP 172
W + Y T + Y+++ NL+ + +YRD K V + P T L+ E L YK
Sbjct: 140 WVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYK- 198
Query: 173 DHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 232
+ S+Y++ L + LE A+ LIWTTTPW+LP N A +P Y+ V
Sbjct: 199 EIQDPSVYVRFPLKEPKKLGLEKAS---LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD 255
Query: 233 ANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSS 291
+I+ + L L +V+ FPG+ L+ + Y P + ++ ++ A +VS
Sbjct: 256 EALILEEGLGRKL---LGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQE 312
Query: 292 KGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL----EGLNILGDGKD 347
GTG+VH APA G +D A +P+L + +GK + GL IL D +
Sbjct: 313 DGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRAILRDLRG 372
Query: 348 QVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
+ L E E+Y HSYP+ WR P++ A++ WFI K E +
Sbjct: 373 RGLLFKE------ESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELI 416
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1148 ENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQ-IA 1206
E+Y HSYP+ WR P++ A++ WFI K E + + +++VP K+ + +
Sbjct: 380 ESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLK 439
Query: 1207 QRPYWCISRQRVWGVPIPVF 1226
W +SR R WG P+P++
Sbjct: 440 NLVDWALSRNRYWGTPLPIW 459
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 122/520 (23%), Positives = 200/520 (38%), Gaps = 73/520 (14%)
Query: 522 QDITYIHPINKEQRD------LKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPV 575
+D Y H + K R + +L V GTG + PAH D+ + +
Sbjct: 231 EDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKP 290
Query: 576 LNLITNQGKYSPDAGP-GLEGLNILGDGKDQVLHLVEPD-VLWTENYQHSYPYDWRTKKP 633
+++I +G+ + P L GL+ + V E ++ E+Y + R P
Sbjct: 291 VSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTP 350
Query: 634 VILKASQQWFIDTERIKPEALACLE--EVNFVPESAKKTLRDQIAQRPYWCISRQRVWGV 691
+ QW++ + E L L ++ FVPE KK D + W ISRQ WG
Sbjct: 351 IEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGH 410
Query: 692 PIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNS-NVTKSNDILD 750
IP +Y D VN + + +E + S + + D+ D
Sbjct: 411 QIPAWYCEDCQAVNVPRPERY----------------LEDPTSCEACGSPRLKRDEDVFD 454
Query: 751 IWFDSGI------SWSHVLKD----KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRN 800
WF S + W +D P V + G D + W ++ PF+
Sbjct: 455 TWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKT 514
Query: 801 VFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPA 860
V LHG V+DEKG KMSKS GNVI ++ +
Sbjct: 515 VLLHGLVLDEKGQKMSKSKGNVIDPLEMVE-----------------------------R 545
Query: 861 YGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISR 920
YG D LR+ + A+ + + L +++ K+ ++ R++L + ++
Sbjct: 546 YGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVL-LSREGFQAKEDTPT 604
Query: 921 YVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSING 980
D +M RL + LY A+A+R + V +E +Y K L + +
Sbjct: 605 LADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAHT 664
Query: 981 EARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQ 1020
L TL + VLL+ + P+MP L E+Y L ++
Sbjct: 665 ------LRTLEEVLAVLLKLLHPMMPFLTSELYQALTGKE 698
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 86/404 (21%), Positives = 153/404 (37%), Gaps = 69/404 (17%)
Query: 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIEL- 74
+GKP F++ PP G+ H+GHA++ L+D +R ++G ++PG D G+ ++
Sbjct: 31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVV 90
Query: 75 --KAITSKDKLLSPLDIRK---KAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEY 129
+ + + K L K + + E+ T + + G ADW + T D++
Sbjct: 91 VERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAF-TMDEKR 149
Query: 130 VKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVP 189
+ F Y + YR + V W P T L++ E+E +P K L+ +
Sbjct: 150 SRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTP-GKLYTLRYE----- 203
Query: 190 AHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTF 249
+EG + I T P ++ A+Q IA +P
Sbjct: 204 ---VEGGGFIE--IATVRPETVFADQAIAVHP---------------------------- 230
Query: 250 QTDIEVVCDFPGQYLQDITYIHPINKEQRD------LKLLPAGFVSSSKGTGLVHCAPAH 303
+D Y H + K R + +L V GTG + PAH
Sbjct: 231 ---------------EDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAH 275
Query: 304 GQDDFLLALAEKIPVLNLITNQGKYSPDAGP-GLEGLNILGDGKDQVLHLVEPD-VLWTE 361
D+ + + +++I +G+ + P L GL+ + V E ++ E
Sbjct: 276 DPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEE 335
Query: 362 NYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNI 405
+Y + R P+ QW++ + E L G+I
Sbjct: 336 DYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDI 379
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 1112 QGKYSPDAGPGLEGLNILGEGKD---QVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKA 1168
+G+ P+A GL+ + + + HLV+ E+Y + R P+
Sbjct: 301 EGERVPEALRGLDRFEARRKAVELFREAGHLVK-----EEDYTIALATCSRCGTPIEYAI 355
Query: 1169 SQQWFIDTERIKPEALACLEG-----VNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPI 1223
QW++ R++P A L+G + FVPE KK D + W ISRQ WG I
Sbjct: 356 FPQWWL---RMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQI 412
Query: 1224 PVFYDGDTIIVN 1235
P +Y D VN
Sbjct: 413 PAWYCEDCQAVN 424
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
pdb|1WK8|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
Length = 194
Score = 80.5 bits (197), Expect = 5e-15, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 17/197 (8%)
Query: 178 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 237
S+Y++ L + LE A+ LIWTTTPW+LP N A +P Y+ V +I+
Sbjct: 10 SVYVRFPLKEPKKLGLEKAS---LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 66
Query: 238 AKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGTGL 296
+ L L V+ FPG+ L+ + Y P + ++ ++ A +VS GTG+
Sbjct: 67 EEGLGRKL---LGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGI 123
Query: 297 VHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL----EGLNILGDGKDQVLHL 352
VH APA G +D A +P+L + +GK + GL IL D + + L
Sbjct: 124 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGLLF 183
Query: 353 VEPDVLWTENYQHSYPY 369
E E+Y HSYP+
Sbjct: 184 KE------ESYLHSYPH 194
Score = 80.5 bits (197), Expect = 6e-15, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 17/197 (8%)
Query: 435 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 494
S+Y++ L + LE A+ LIWTTTPW+LP N A +P Y+ V +I+
Sbjct: 10 SVYVRFPLKEPKKLGLEKAS---LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 66
Query: 495 AKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGTGL 553
+ L L V+ FPG+ L+ + Y P + ++ ++ A +VS GTG+
Sbjct: 67 EEGLGRKL---LGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGI 123
Query: 554 VHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL----EGLNILGDGKDQVLHL 609
VH APA G +D A +P+L + +GK + GL IL D + + L
Sbjct: 124 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGLLF 183
Query: 610 VEPDVLWTENYQHSYPY 626
E E+Y HSYP+
Sbjct: 184 KE------ESYLHSYPH 194
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
pdb|1UE0|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
Length = 182
Score = 77.4 bits (189), Expect = 5e-14, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 7/160 (4%)
Query: 178 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 237
S+Y++ L + LE A+ LIWTTTPW+LP N A +P Y+ V +I+
Sbjct: 5 SVYVRFPLKEPKKLGLEKAS---LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 61
Query: 238 AKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGTGL 296
+ L L +V+ FPG+ L+ + Y P + ++ ++ A +VS GTG+
Sbjct: 62 EEGLGRKL---LGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGI 118
Query: 297 VHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL 336
VH APA G +D A +P+L + +GK + GL
Sbjct: 119 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGL 158
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 435 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 494
S+Y++ L + LE A+ LIWTTTPW+LP N A +P Y+ V +I+
Sbjct: 5 SVYVRFPLKEPKKLGLEKAS---LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 61
Query: 495 AKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGTGL 553
+ L L V+ FPG+ L+ + Y P + ++ ++ A +VS GTG+
Sbjct: 62 EEGLGRKL---LGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGI 118
Query: 554 VHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL 593
VH APA G +D A +P+L + +GK + GL
Sbjct: 119 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGL 158
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1UDZ|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
Length = 182
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 178 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 237
S+Y++ L + LE A+ LIWTTTPW+LP N A +P Y+ V +I+
Sbjct: 5 SVYVRFPLKEPKKLGLEKAS---LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 61
Query: 238 AKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGTGL 296
+ L L V+ FPG+ L+ + Y P + ++ ++ A +VS GTG+
Sbjct: 62 EEGLGRKL---LGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGI 118
Query: 297 VHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL 336
VH APA G +D A +P+L + +GK + GL
Sbjct: 119 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGL 158
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 435 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 494
S+Y++ L + LE A+ LIWTTTPW+LP N A +P Y+ V +I+
Sbjct: 5 SVYVRFPLKEPKKLGLEKAS---LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 61
Query: 495 AKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGTGL 553
+ L L V+ FPG+ L+ + Y P + ++ ++ A +VS GTG+
Sbjct: 62 EEGLGRKL---LGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGI 118
Query: 554 VHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL 593
VH APA G +D A +P+L + +GK + GL
Sbjct: 119 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGL 158
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNY|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Post-Transfer Editing Substrate Analogue, Val-2aa
Length = 186
Score = 75.9 bits (185), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 178 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 237
S+Y++ L + LE A+ LIWTTTPW+LP N A +P Y+ V +I+
Sbjct: 5 SVYVRFPLKEPKKLGLEKAS---LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 61
Query: 238 AKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGTGL 296
+ L L V+ FPG+ L+ + Y P + ++ ++ A +VS GTG+
Sbjct: 62 EEGLGRKL---LGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGI 118
Query: 297 VHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL 336
VH APA G +D A +P+L + +GK + GL
Sbjct: 119 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGL 158
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 435 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 494
S+Y++ L + LE A+ LIWTTTPW+LP N A +P Y+ V +I+
Sbjct: 5 SVYVRFPLKEPKKLGLEKAS---LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 61
Query: 495 AKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGTGL 553
+ L L V+ FPG+ L+ + Y P + ++ ++ A +VS GTG+
Sbjct: 62 EEGLGRKL---LGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGI 118
Query: 554 VHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL 593
VH APA G +D A +P+L + +GK + GL
Sbjct: 119 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGL 158
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 133/352 (37%), Gaps = 70/352 (19%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPL 87
PY +G H+GH N + D+ R +QG V + GWD GLP E A L
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAA----------L 91
Query: 88 DIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIY 147
K++ I K G+L DW+ T + EY + F ++++ Y
Sbjct: 92 KFGVHPKDWTYANIRQAKESLRLMGILYDWDREV-TTCEPEYYRWNQWIFLKMWEKGLAY 150
Query: 148 RDLKPVYWSPSSRTALAESEL--------EYKPDHVSKSIYLKIKLNQVPAHLL------ 193
R V W P +T LA ++ E P + +++ LL
Sbjct: 151 RAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGL 210
Query: 194 -----------------EGATDLHAL--------IWTTTPWSLPANQFIAFNPA--LEYS 226
EGA L + ++TT P +L F+ P L
Sbjct: 211 NWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLE 270
Query: 227 VASVKGANVIVAKCLVESLKWTFQTDIEVVCD-------FPGQYLQDITYIHPINKEQRD 279
+A+ + ++A VE+ K +T+IE + F G Y ++P E+
Sbjct: 271 LAAPEKREEVLA--YVEAAK--RKTEIERQAEGREKTGVFLGAYA-----LNPATGER-- 319
Query: 280 LKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPD 331
+ + A +V GTG + PAH Q D+ A +P+ +I G+ P+
Sbjct: 320 IPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPE 371
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 106/534 (19%), Positives = 180/534 (33%), Gaps = 129/534 (24%)
Query: 542 AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGD 601
A +V GTG + PAH Q D+ A +P+ +I G+ P+ LE
Sbjct: 325 ADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEP---LE------- 374
Query: 602 GKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVN 661
EP ++ +S P+D ++E K + +A LEE
Sbjct: 375 -----RAYEEPGIM-----VNSGPFD---------------GTESEEGKRKVIAWLEEKG 409
Query: 662 FVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLID---- 717
LRD W ISRQR WG PIP+ + +V + L D
Sbjct: 410 LGKGRVTYRLRD-------WLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDV 462
Query: 718 -----------EHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDK 766
E P+F+ + + D +D +FDS SW ++
Sbjct: 463 EDIRPKGKSPLEAHPEFYET-------TCPKCGGPAKRDTDTMDTFFDS--SWYYLRYTD 513
Query: 767 P-----------AHVYMEGMDQING-----------WFMSSLLTSVAL-KHTAPFRNVFL 803
P A+ +M I G F + L + + K PF+ +F
Sbjct: 514 PHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFT 573
Query: 804 HGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGV 863
G V+ + G+V+ + T+ ++P + +S D+ + +L +
Sbjct: 574 QGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPE------SALSLEDVRKMGAELRPHED 627
Query: 864 DVLRWWVAA--HASKDPTVPIGKNILNSSQDDV------------------QKIRSSLRY 903
L W A SK V +G + D + ++ + R+
Sbjct: 628 GTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRF 687
Query: 904 LLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSA 963
L + +E ++ V+ + L + LYG+ L V +L A
Sbjct: 688 LNRIYRRVAEDREALLETSGVFQAEAL---EGKDRELYGKLHET------LKKVTEDLEA 738
Query: 964 FYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLR----TVAPIMPHLAEEVY 1013
F L + +N + ++ +R + P PHLAEE++
Sbjct: 739 LRFNTAIAAL-MEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELW 791
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 1175 DTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFY 1227
++E K + +A LE LRD W ISRQR WG PIP+ +
Sbjct: 393 ESEEGKRKVIAWLEEKGLGKGRVTYRLRD-------WLISRQRYWGTPIPMVH 438
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 133/352 (37%), Gaps = 70/352 (19%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPL 87
PY +G H+GH N + D+ R +QG V + GWD GLP E A L
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAA----------L 91
Query: 88 DIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIY 147
K++ I K G+L DW+ T + EY + F ++++ Y
Sbjct: 92 KFGVHPKDWTYANIRQAKESLRLMGILYDWDREV-TTCEPEYYRWNQWIFLKMWEKGLAY 150
Query: 148 RDLKPVYWSPSSRTALAESEL--------EYKPDHVSKSIYLKIKLNQVPAHLL------ 193
R V W P +T LA ++ E P + +++ LL
Sbjct: 151 RAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGL 210
Query: 194 -----------------EGATDLHAL--------IWTTTPWSLPANQFIAFNPA--LEYS 226
EGA L + ++TT P +L F+ P L
Sbjct: 211 NWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLE 270
Query: 227 VASVKGANVIVAKCLVESLKWTFQTDIEVVCD-------FPGQYLQDITYIHPINKEQRD 279
+A+ + ++A VE+ K +T+IE + F G Y ++P E+
Sbjct: 271 LAAPEKREEVLA--YVEAAK--RKTEIERQAEGREKTGVFLGAYA-----LNPATGER-- 319
Query: 280 LKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPD 331
+ + A +V GTG + PAH Q D+ A +P+ +I G+ P+
Sbjct: 320 IPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPE 371
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 106/534 (19%), Positives = 180/534 (33%), Gaps = 129/534 (24%)
Query: 542 AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGD 601
A +V GTG + PAH Q D+ A +P+ +I G+ P+ LE
Sbjct: 325 ADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEP---LE------- 374
Query: 602 GKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVN 661
EP ++ +S P+D ++E K + +A LEE
Sbjct: 375 -----RAYEEPGIM-----VNSGPFD---------------GTESEEGKRKVIAWLEEKG 409
Query: 662 FVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLID---- 717
LRD W ISRQR WG PIP+ + +V + L D
Sbjct: 410 LGKGRVTYRLRD-------WLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDV 462
Query: 718 -----------EHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDK 766
E P+F+ + + D +D +FDS SW ++
Sbjct: 463 EDIRPKGKSPLEAHPEFYET-------TCPKCGGPAKRDTDTMDTFFDS--SWYYLRYTD 513
Query: 767 P-----------AHVYMEGMDQING-----------WFMSSLLTSVAL-KHTAPFRNVFL 803
P A+ +M I G F + L + + K PF+ +F
Sbjct: 514 PHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFT 573
Query: 804 HGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGV 863
G V+ + G+V+ + T+ ++P + +S D+ + +L +
Sbjct: 574 QGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPE------SALSLEDVRKMGAELRPHED 627
Query: 864 DVLRWWVAA--HASKDPTVPIGKNILNSSQDDV------------------QKIRSSLRY 903
L W A SK V +G + D + ++ + R+
Sbjct: 628 GTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRF 687
Query: 904 LLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSA 963
L + +E ++ V+ + L + LYG+ L V +L A
Sbjct: 688 LNRIYRRVAEDREALLETSGVFQAEAL---EGKDRELYGKLHET------LKKVTEDLEA 738
Query: 964 FYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLR----TVAPIMPHLAEEVY 1013
F L + +N + ++ +R + P PHLAEE++
Sbjct: 739 LRFNTAIAAL-MEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELW 791
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 1175 DTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFY 1227
++E K + +A LE LRD W ISRQR WG PIP+ +
Sbjct: 393 ESEEGKRKVIAWLEEKGLGKGRVTYRLRD-------WLISRQRYWGTPIPMVH 438
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 120/302 (39%), Gaps = 34/302 (11%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSP- 86
PY +G H+GHA + D+ R +QG V + W G PI I + K P
Sbjct: 43 PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPI--VGIAERIKNRDPK 100
Query: 87 -----LDIRKKAK----------NFALETINTQKAEFESWGVLADWEHNCYHT-FDKEYV 130
D+ K + N + K F G DW Y T +
Sbjct: 101 TIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160
Query: 131 KNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVPA 190
K QF+ L ++ YI + V W P T L + +L D V Y+ IK
Sbjct: 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGED-VPILDYIIIKF----- 214
Query: 191 HLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANV----IVAKCLVESLK 246
L E ++ T P ++ + NP Y A V+ + IV+K + K
Sbjct: 215 ELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEA--AYK 272
Query: 247 WTFQ-TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQ 305
+FQ +IEV+ +F G+ L +P++ ++ + +LPA FV TG+V PAH
Sbjct: 273 LSFQDREIEVIEEFKGEKLIGKYVRNPVSGDE--VIILPAEFVDPDNATGVVMSVPAHAP 330
Query: 306 DD 307
D
Sbjct: 331 FD 332
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 130/632 (20%), Positives = 228/632 (36%), Gaps = 158/632 (25%)
Query: 477 NPALEYSVASVKGANV----IVAKCLVENLKWTFQ-TDIDVVCDFPGQYLQDITYIHPIN 531
NP Y A V+ + IV+K L +FQ +I+V+ +F G+ L +P++
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKL--SFQDREIEVIEEFKGEKLIGKYVRNPVS 301
Query: 532 KEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLL------------------ALAEKI 573
++ + +LPA FV TG+V PAH D + + E I
Sbjct: 302 GDE--VIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENI 359
Query: 574 PVLNLITNQGKYSPDAGPGLEGLNILG--------------------------------D 601
++LI +G P +E +N LG +
Sbjct: 360 TYISLIKLEGY---GDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYE 416
Query: 602 GK--DQVLHLVEPDVLWTENYQHSYPYDWRT------KKPVILKASQQWFID--TERIKP 651
GK +V + ++L + Y + + + VI QWFID K
Sbjct: 417 GKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKE 476
Query: 652 EALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDTII--VNEANI 709
+A LE + +PE+ + I +R+ G P+P +D + +I ++++ I
Sbjct: 477 KARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLP--WDPEWVIESLSDSTI 534
Query: 710 KHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDK--- 766
I H + +L ++ + + D F S + +
Sbjct: 535 YMAYYTISRH---------INKLRQEGKLDPEKL-TPEFFDYIFLEEFSEDKEKELEKKT 584
Query: 767 --PAHVYMEGMDQINGWF-----------MSSLLTSVALKHTAPFRN------VFLHGFV 807
PA + E ++ W+ + + LT H A FR + ++GF
Sbjct: 585 GIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFG 644
Query: 808 VDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLR 867
E G KMSKS GNV+ N I A + G DV+R
Sbjct: 645 TLE-GQKMSKSKGNVL--------------------NFIDA---------IEENGADVVR 674
Query: 868 WWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSE--STGSIS-RYVDV 924
++ + A D + + +V K+R + ++ +E G++ + +D
Sbjct: 675 LYIMSLAEHDSD-------FDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDR 727
Query: 925 YMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARL 984
+ML RL + EF+ A + ++N+L R Y G
Sbjct: 728 WMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDL----------RWYLRRTEGRDDE 777
Query: 985 SGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
+ + L + V +R +AP PH+ EE++ L
Sbjct: 778 AKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 121/302 (40%), Gaps = 34/302 (11%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSP- 86
PY +G H+GHA + D+ R +QG V + W G PI I + K P
Sbjct: 43 PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPI--VGIAERIKNRDPK 100
Query: 87 -----LDIRKKAK----------NFALETINTQKAEFESWGVLADWEHNCYHT-FDKEYV 130
D+ K + N + K F G DW Y T +
Sbjct: 101 TIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160
Query: 131 KNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVPA 190
K QF+ L ++ YI + V W P T L + +L + + V Y+ IK
Sbjct: 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDL-MEGEDVPILDYIIIKF----- 214
Query: 191 HLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANV----IVAKCLVESLK 246
L E ++ T P ++ + NP Y A V+ + IV+K + K
Sbjct: 215 ELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEA--AYK 272
Query: 247 WTFQ-TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQ 305
+FQ +IEV+ +F G+ L +P++ ++ + +LPA FV TG+V PAH
Sbjct: 273 LSFQDREIEVIEEFKGEKLIGKYVRNPVSGDE--VIILPAEFVDPDNATGVVMSVPAHAP 330
Query: 306 DD 307
D
Sbjct: 331 FD 332
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 130/632 (20%), Positives = 228/632 (36%), Gaps = 158/632 (25%)
Query: 477 NPALEYSVASVKGANV----IVAKCLVENLKWTFQ-TDIDVVCDFPGQYLQDITYIHPIN 531
NP Y A V+ + IV+K L +FQ +I+V+ +F G+ L +P++
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKL--SFQDREIEVIEEFKGEKLIGKYVRNPVS 301
Query: 532 KEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLL------------------ALAEKI 573
++ + +LPA FV TG+V PAH D + + E I
Sbjct: 302 GDE--VIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENI 359
Query: 574 PVLNLITNQGKYSPDAGPGLEGLNILG--------------------------------D 601
++LI +G P +E +N LG +
Sbjct: 360 TYISLIKLEGY---GDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYE 416
Query: 602 GK--DQVLHLVEPDVLWTENYQHSYPYDWRT------KKPVILKASQQWFID--TERIKP 651
GK +V + ++L + Y + + + VI QWFID K
Sbjct: 417 GKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKE 476
Query: 652 EALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDTII--VNEANI 709
+A LE + +PE+ + I +R+ G P+P +D + +I ++++ I
Sbjct: 477 KARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLP--WDPEWVIESLSDSTI 534
Query: 710 KHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDK--- 766
I H + +L ++ + + D F S + +
Sbjct: 535 YMAYYTISRH---------INKLRQEGKLDPEKL-TPEFFDYIFLEEFSEDKEKELEKKT 584
Query: 767 --PAHVYMEGMDQINGWF-----------MSSLLTSVALKHTAPFRN------VFLHGFV 807
PA + E ++ W+ + + LT H A FR + ++GF
Sbjct: 585 GIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFG 644
Query: 808 VDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLR 867
E G KMSKS GNV+ N I A + G DV+R
Sbjct: 645 TLE-GQKMSKSKGNVL--------------------NFIDA---------IEENGADVVR 674
Query: 868 WWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSE--STGSIS-RYVDV 924
++ + A D + + +V K+R + ++ +E G++ + +D
Sbjct: 675 LYIMSLAEHDSD-------FDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDR 727
Query: 925 YMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARL 984
+ML RL + EF+ A + ++N+L R Y G
Sbjct: 728 WMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDL----------RWYLRRTEGRDDE 777
Query: 985 SGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
+ + L + V +R +AP PH+ EE++ L
Sbjct: 778 AKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 91/443 (20%), Positives = 173/443 (39%), Gaps = 109/443 (24%)
Query: 629 RTKKPVILKASQQWFIDTERIKPEALACLEEVNFV--PESAKKTLRDQIAQRPY------ 680
R PV K +QW + +I A LE++N + P+S KK + I +
Sbjct: 187 RGSFPVYKKPMKQWVL---KITNYADRLLEDLNLLDWPDSLKKLQTNWIGKEEIDGKITY 243
Query: 681 ----WCISRQRVWGVPIPVFYDGDT---IIVNEANIKHFCTLIDE---HGP----DFWWS 726
W +RQR WG P PV++D D +I + H ++ GP W
Sbjct: 244 KLQDWIFARQRYWGEPFPVYFDEDNNVYLIDELVELPHMENIMPSGTGEGPLATNTEWVQ 303
Query: 727 LSVEQLLNTSDVNSN-------------VTKSNDILDIWFDSGISWSHVLKDKPAHVYME 773
+ D N+ + K D + DS ++ K P +Y+
Sbjct: 304 YKKNNKIFKRDTNTMPQWAGSCWYYLAYIMKQEDGTYLPIDSKKAYEAFSKWLPVDLYIG 363
Query: 774 GMDQ-----INGWFMSSLLTSVALKHTA-PFRNVFLHGFVVDEKGAKMSKSVGNVISAHD 827
G + + F +L + + T PF+ + G ++ + G KMSKS+GNV++ +
Sbjct: 364 GQEHAVLHLLYARFWHKILYDLKIVPTKEPFQKLINQGMILGKDGQKMSKSLGNVVNPDE 423
Query: 828 ITQ--GAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKN 885
I Q GA L YE +G + D +W
Sbjct: 424 IIQNFGADTLRVYEMFMGPL-----------------TDTKKW----------------- 449
Query: 886 ILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQ 945
N S + ++ +++L V R +++ E ++ +++L+ + Q
Sbjct: 450 --NEST-----VEATYKWILRV-----------KRIFQIFI-----EDKSKINSLHKDDQ 486
Query: 946 YARASRVLLNFVVNELSAFYFTLVKDRL--YCDSINGEARLSGLHTLHNIFHVLLRTVAP 1003
+ +L+ + ++ F ++ +L + +S+ + ++ L L + F ++ T+A
Sbjct: 487 FISEHNLLIKEITQDIEDLKFNIMISKLMIFVNSLYKKEKIYSLKPLKD-FAIMFSTIA- 544
Query: 1004 IMPHLAEEVYSHLPSRQGTFSSF 1026
PH++EE+ L ++ F S+
Sbjct: 545 --PHISEELLESLGEKEIMFQSW 565
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 84/211 (39%), Gaps = 27/211 (12%)
Query: 17 GKPEFILHDGPPYANGTP-HIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELK 75
K +F D PY +G+ H+GH DI R L+G V + GWD GLP E
Sbjct: 34 SKDKFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKRLKGFDVLHPIGWDAFGLPAEQY 93
Query: 76 AITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLC 135
A++S K + F L+ I + + +S G D+E +T D Y +
Sbjct: 94 ALSSG----------KHPQPFTLKNIENFRRQLKSLGFSFDYEKEV-NTTDPSYYRWTQW 142
Query: 136 QFYNLYKQDYIYRDLKPVYWSPSSRTALAESEL------EYKPDHVSKSIYLK------I 183
F +YK+ V W P T LA E+ E + S +Y K +
Sbjct: 143 IFKQIYKKGLAEIREVDVNWCPGLGTVLANEEIVENDKGEMVSERGSFPVYKKPMKQWVL 202
Query: 184 KLNQVPAHLLEGATDLHALIWTTTPWSLPAN 214
K+ LLE DL+ L W + L N
Sbjct: 203 KITNYADRLLE---DLNLLDWPDSLKKLQTN 230
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 1159 RTKKPVILKASQQWFIDTERIKPEALACLEGVNFV--PESAKKSLRDQIAQRPY------ 1210
R PV K +QW + +I A LE +N + P+S KK + I +
Sbjct: 187 RGSFPVYKKPMKQWVL---KITNYADRLLEDLNLLDWPDSLKKLQTNWIGKEEIDGKITY 243
Query: 1211 ----WCISRQRVWGVPIPVFYDGDT 1231
W +RQR WG P PV++D D
Sbjct: 244 KLQDWIFARQRYWGEPFPVYFDEDN 268
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 123/346 (35%), Gaps = 60/346 (17%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPL 87
PY +G H+GH N + D+ R + GK V GWD GLP E A+ + + +P
Sbjct: 62 PYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKN-NTAPAP- 119
Query: 88 DIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIY 147
+ + I K + + G DW T EY + + F LYK+ +Y
Sbjct: 120 --------WTYDNIAYMKNQLKMLGFGYDWSREL-ATCTPEYYRWEQKFFTELYKKGLVY 170
Query: 148 RDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVP-------AHLLEGATDLH 200
+ V W P+ +T LA ++ D K++ ++P A+ E DL
Sbjct: 171 KKTSAVNWCPNDQTVLANEQV---IDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLD 227
Query: 201 AL-----------------------------------IWTTTPWSLPANQFIAFNPALEY 225
L ++TT P + ++A A +
Sbjct: 228 KLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAV--AAGH 285
Query: 226 SVASVKGANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPA 285
+A N ++ + T + E+ +HP+ E+ + + A
Sbjct: 286 PLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEE--IPVWAA 343
Query: 286 GFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPD 331
FV GTG V P H Q D+ A + + +I PD
Sbjct: 344 NFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPD 389
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 60/169 (35%), Gaps = 44/169 (26%)
Query: 527 IHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYS 586
+HP+ E+ + + A FV GTG V P H Q D+ A KY
Sbjct: 330 VHPLTGEE--IPVWAANFVLMEYGTGAVMAVPGHDQRDYEFA--------------SKY- 372
Query: 587 PDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDT 646
GLNI +P +L + + T+K V+ + + +D
Sbjct: 373 --------GLNI------------KPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDH 412
Query: 647 ERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPV 695
E L + LRD W +SRQR WG PIP+
Sbjct: 413 EAAFNAIADKLTAMGVGERKVNYRLRD-------WGVSRQRYWGAPIPM 454
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 1211 WCISRQRVWGVPIPV 1225
W +SRQR WG PIP+
Sbjct: 440 WGVSRQRYWGAPIPM 454
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 75
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli
Complexed With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methionine And Adenosine
Length = 551
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 62
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna
Synthetase Complexed With Methionine
Length = 551
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 15 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 63
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 62
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 62
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLD 88
Y N PHIGH + ++ D+ R + ++G+RV + G D HG + A +K K +SP D
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
Query: 89 I 89
Sbjct: 76 F 76
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 24/54 (44%)
Query: 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 69
G F + Y NG PHIGHA I D R L G V Y+ G D HG
Sbjct: 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG 62
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 767 PAHVYMEGMDQINGWFMSSLLTSVALKHTAPF-RNVFLHGFVVDEKGAKMSKSVGNVI 823
PA ++M G D I F + + + P + +F HG++++ +G KMSKS+GNV+
Sbjct: 265 PADLHMIGKDIIR--FHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RGEKMSKSIGNVV 319
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLD 88
Y N PHIGH + ++ D+ R + ++G+RV + G D HG + A +K K +SP D
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
Query: 89 I 89
Sbjct: 76 F 76
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLD 88
Y N PHIGH + ++ D+ R + ++G+RV + G D HG + A +K K +SP D
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV---AEAAKQKQVSPYD 75
Query: 89 I 89
Sbjct: 76 F 76
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs
From Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs
From Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs
From Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLD 88
Y NG PHIGHA I D R L G V+++ G D HG+ + A + + ++P D
Sbjct: 35 YPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSA---RKEGITPRD 91
Query: 89 IRKK 92
+ +
Sbjct: 92 LADR 95
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 41/148 (27%)
Query: 768 AHVYMEGMDQINGWFMSSLLTSVALKHTAPF-RNVFLHGFVVDEKGAKMSKSVGNVISAH 826
AH+ + + + + + + L S L P + VF HGF+ + +G KMSKSVGNVI
Sbjct: 279 AHIIGKDISRFHAVYWPAFLMSAQL----PLPKRVFAHGFLFN-RGEKMSKSVGNVIDPF 333
Query: 827 DITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNI 886
++ + YG+D LR+++ VP G++
Sbjct: 334 ELVE-----------------------------RYGLDQLRYFLMRE------VPFGQDG 358
Query: 887 LNSSQDDVQKIRSSLRYLLGVLHNHSES 914
S + V + + L LG L S S
Sbjct: 359 SYSHEAIVNRTNADLANDLGNLAQRSLS 386
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 21 FILHDGPPYANGTPHIGHAVNKIL-KDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITS 79
+++ PYANG H GH L DI +R L+G+ V ++ G D HG PI +A+
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 80 KDKLLSPLDIRKKAKNFALETINTQKAEFESWG 112
SP +I + T K F+ +G
Sbjct: 64 GR---SPREIVDEFHEQIKITFQRAKISFDFFG 93
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 751 IWFDSGISWSHVLKDK-----PAHVYMEGMD--QINGWFMSSLLTSVALKHTAPFRNVFL 803
+WFD+ ++ L+DK PA +++ G D + + + + L S L + P + VF
Sbjct: 229 VWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMS--LGYELP-KKVFA 285
Query: 804 HGFVVDEKGAKMSKSVGNVISAHDITQ 830
HG+ E G KMSK++GNV+ +++ Q
Sbjct: 286 HGWWTVE-GKKMSKTLGNVVDPYEVVQ 311
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
Y N PH+GHA I D R L+ V ++ G D HGL I+ KA
Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKA 62
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex
With Methionyladenylate And Pyrophosphate
Length = 564
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLD 88
Y N +PHIGH + ++ D+ R + ++G+ V + G D HG + A + + +SP+D
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKV---AEAAAKQGVSPMD 92
Query: 89 I 89
Sbjct: 93 F 93
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 69
Y N PH+GHA ++ D R + L G R ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 745 SNDILDIWFDSGISWSHVLKDKPAHVY---------MEGMDQI--NGWFMSSLLTSVALK 793
N + +WFD+ +++ L Y + G D + + F ++L + +
Sbjct: 220 ENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIP 279
Query: 794 HTAPFRNVFLHGFVVDEKGAKMSKSVGNVI 823
+R++ + GF++ G KMSK++GNV+
Sbjct: 280 M---YRHLNVGGFLLGPDGRKMSKTLGNVV 306
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 69
Y N PH+GHA ++ D R + L G R ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 745 SNDILDIWFDSGISWSHVLKDKPAHVY---------MEGMDQI--NGWFMSSLLTSVALK 793
N + +WFD+ +++ L Y + G D + + F ++L + +
Sbjct: 220 ENHVTAVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIP 279
Query: 794 HTAPFRNVFLHGFVVDEKGAKMSKSVGNVI 823
+R++ + GF++ G KMSK++GNV+
Sbjct: 280 M---YRHLNVGGFLLGPDGRKMSKTLGNVV 306
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 69
Y N PH+GHA ++ D R + L G R ++ G D HG
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 745 SNDILDIWFDSGISWSHVLKDKPAHVY---------MEGMDQI--NGWFMSSLLTSVALK 793
N + +WFD+ +++ L Y + G D + + F ++L + +
Sbjct: 220 ENHVTYVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIP 279
Query: 794 HTAPFRNVFLHGFVVDEKGAKMSKSVGNVI 823
+R++ + GF++ G KMSK++GNV+
Sbjct: 280 M---YRHLNVGGFLLGPDGRKMSKTLGNVV 306
>pdb|2WFE|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|B Chain B, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|C Chain C, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|D Chain D, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFG|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain Bound To A Benzoxaborole-Amp
Adduct
Length = 261
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 278 RDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFL 309
++L++LP V ++KGTG+V C P+ DDF+
Sbjct: 116 KNLRVLPMETVLATKGTGVVTCVPSDSPDDFV 147
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 535 RDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFL 566
++L++LP V ++KGTG+V C P+ DDF+
Sbjct: 116 KNLRVLPMETVLATKGTGVVTCVPSDSPDDFV 147
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 271 HPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSP 330
+P N E+ + + A +V GTG + C PAH Q D+ A +P+ ++ +G +
Sbjct: 101 NPANGEK--IPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDF 158
Query: 331 DAGPGLEGLNIL--GDGKD 347
+ G EG L DG D
Sbjct: 159 EKG-AYEGKGTLVNSDGFD 176
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 528 HPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSP 587
+P N E+ + + A +V GTG + C PAH Q D+ A +P+ ++ +G +
Sbjct: 101 NPANGEK--IPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDF 158
Query: 588 DAGPGLEGLNIL--GDGKD 604
+ G EG L DG D
Sbjct: 159 EKG-AYEGKGTLVNSDGFD 176
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 271 HPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSP 330
+P N E+ + + A +V GTG + C PAH Q D+ A +P+ ++ +G +
Sbjct: 121 NPANGEK--IPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDF 178
Query: 331 DAGPGLEGLNIL--GDGKD 347
+ G EG L DG D
Sbjct: 179 EKG-AYEGKGTLVNSDGFD 196
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 528 HPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSP 587
+P N E+ + + A +V GTG + C PAH Q D+ A +P+ ++ +G +
Sbjct: 121 NPANGEK--IPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDF 178
Query: 588 DAGPGLEGLNIL--GDGKD 604
+ G EG L DG D
Sbjct: 179 EKG-AYEGKGTLVNSDGFD 196
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 271 HPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSP 330
+P N E+ + + A +V GTG + C PAH Q D+ A +P+ ++ +G +
Sbjct: 115 NPANGEK--IPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDF 172
Query: 331 DAGPGLEGLNIL--GDGKD 347
+ G EG L DG D
Sbjct: 173 EKG-AYEGKGTLVNSDGFD 190
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 528 HPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSP 587
+P N E+ + + A +V GTG + C PAH Q D+ A +P+ ++ +G +
Sbjct: 115 NPANGEK--IPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDF 172
Query: 588 DAGPGLEGLNIL--GDGKD 604
+ G EG L DG D
Sbjct: 173 EKG-AYEGKGTLVNSDGFD 190
>pdb|3PZ6|A Chain A, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|B Chain B, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|C Chain C, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|D Chain D, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|E Chain E, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|F Chain F, The Crystal Structure Of Glleurs-Cp1
Length = 311
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 433 SKSIYLKIKLNQV---PAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 489
+K+I+ ++ NQV +LL ++ T W LP ++ A+ + + +
Sbjct: 63 NKAIFDQLWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEH 122
Query: 490 ANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSK 549
A V +A + N K ++D + + G L T P++ ++ + +LP + K
Sbjct: 123 AAVNMAHQGLNNNKPF--GELDFISEISGSDLLLATVRAPLSPYEQ-IFVLPLETIKMDK 179
Query: 550 GTGLVHCAPAHGQDDF 565
GTG+V P+ DD+
Sbjct: 180 GTGIVTSVPSDAPDDY 195
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 176 SKSIYLKIKLNQV---PAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 232
+K+I+ ++ NQV +LL ++ T W LP ++ A+ + + +
Sbjct: 63 NKAIFDQLWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEH 122
Query: 233 ANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSK 292
A V +A + + K + D + + G L T P++ ++ + +LP + K
Sbjct: 123 AAVNMAHQGLNNNKPFGELDF--ISEISGSDLLLATVRAPLSPYEQ-IFVLPLETIKMDK 179
Query: 293 GTGLVHCAPAHGQDDF 308
GTG+V P+ DD+
Sbjct: 180 GTGIVTSVPSDAPDDY 195
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 270 IHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYS 329
+HP+ E+ + + A FV GTG V P H Q D+ A + + +I
Sbjct: 93 VHPLTGEE--IPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSE 150
Query: 330 PD 331
PD
Sbjct: 151 PD 152
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 527 IHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYS 586
+HP+ E+ + + A FV GTG V P H Q D+ A + + +I
Sbjct: 93 VHPLTGEE--IPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSE 150
Query: 587 PD 588
PD
Sbjct: 151 PD 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,607,316
Number of Sequences: 62578
Number of extensions: 1895278
Number of successful extensions: 4666
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4496
Number of HSP's gapped (non-prelim): 131
length of query: 1281
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1171
effective length of database: 8,089,757
effective search space: 9473105447
effective search space used: 9473105447
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)